Query 006706
Match_columns 634
No_of_seqs 465 out of 4086
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 13:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 3.8E-46 8.2E-51 391.7 47.4 391 122-588 488-883 (890)
2 PRK11091 aerobic respiration c 100.0 9.7E-40 2.1E-44 375.7 44.8 265 338-630 277-543 (779)
3 PRK10490 sensor protein KdpD; 100.0 6E-38 1.3E-42 359.2 51.3 388 124-586 493-884 (895)
4 PRK10618 phosphotransfer inter 100.0 1E-39 2.3E-44 369.6 35.9 275 326-629 432-706 (894)
5 PRK13837 two-component VirA-li 100.0 1.3E-36 2.9E-41 349.6 53.0 447 128-629 261-714 (828)
6 PRK10841 hybrid sensory kinase 100.0 8.5E-37 1.8E-41 351.3 35.8 242 324-586 427-669 (924)
7 TIGR02956 TMAO_torS TMAO reduc 100.0 3.7E-36 8.1E-41 355.1 38.6 270 331-630 451-720 (968)
8 TIGR02916 PEP_his_kin putative 100.0 7.2E-34 1.6E-38 320.4 51.1 366 146-583 307-679 (679)
9 COG5002 VicK Signal transducti 100.0 2.7E-37 6E-42 293.3 18.7 227 341-588 222-452 (459)
10 PRK15347 two component system 100.0 2.1E-35 4.5E-40 347.2 37.5 241 323-587 377-617 (921)
11 PRK11466 hybrid sensory histid 100.0 2.1E-35 4.6E-40 346.3 36.5 277 320-629 420-698 (914)
12 PRK11107 hybrid sensory histid 100.0 8.4E-35 1.8E-39 342.1 40.1 283 322-630 271-554 (919)
13 PRK09303 adaptive-response sen 100.0 3.5E-34 7.5E-39 300.6 32.9 241 323-585 130-378 (380)
14 PRK09959 hybrid sensory histid 100.0 7E-33 1.5E-37 333.4 33.7 276 331-629 699-975 (1197)
15 COG4251 Bacteriophytochrome (l 100.0 5.4E-32 1.2E-36 276.0 34.1 390 143-588 327-745 (750)
16 PRK11006 phoR phosphate regulo 100.0 8.2E-30 1.8E-34 273.2 38.1 219 344-586 204-425 (430)
17 COG4191 Signal transduction hi 100.0 7.2E-30 1.6E-34 261.5 30.1 213 343-584 383-601 (603)
18 PRK10604 sensor protein RstB; 100.0 1.7E-29 3.7E-34 270.4 30.0 231 326-586 194-425 (433)
19 PRK10364 sensor protein ZraS; 100.0 2.3E-27 4.9E-32 256.5 46.0 214 342-586 235-450 (457)
20 TIGR02938 nifL_nitrog nitrogen 100.0 2.4E-29 5.3E-34 275.0 29.6 218 342-584 274-494 (494)
21 COG3852 NtrB Signal transducti 100.0 3.8E-29 8.3E-34 234.9 24.4 221 343-586 131-356 (363)
22 PRK10815 sensor protein PhoQ; 100.0 9E-29 1.9E-33 267.1 30.2 230 328-585 250-479 (485)
23 PRK10755 sensor protein BasS/P 100.0 1.7E-27 3.6E-32 249.1 28.3 212 344-585 137-351 (356)
24 PRK10549 signal transduction h 100.0 2.6E-27 5.6E-32 257.2 29.7 241 322-586 218-460 (466)
25 TIGR03785 marine_sort_HK prote 100.0 3.3E-27 7.1E-32 264.9 30.4 238 322-583 463-703 (703)
26 TIGR01386 cztS_silS_copS heavy 100.0 1.7E-26 3.6E-31 250.2 28.9 237 321-583 218-457 (457)
27 PRK13557 histidine kinase; Pro 100.0 3.4E-26 7.3E-31 253.3 31.4 265 343-629 162-432 (540)
28 PRK09835 sensor kinase CusS; P 100.0 3.7E-26 8.1E-31 249.2 31.2 238 322-584 240-480 (482)
29 PRK09470 cpxA two-component se 100.0 5.7E-26 1.2E-30 246.3 30.9 238 321-585 220-458 (461)
30 PRK10337 sensor protein QseC; 100.0 5.4E-26 1.2E-30 245.5 29.8 232 323-582 216-449 (449)
31 TIGR02966 phoR_proteo phosphat 100.0 3.4E-26 7.3E-31 236.7 26.8 216 344-582 114-333 (333)
32 PRK11100 sensory histidine kin 100.0 5.6E-26 1.2E-30 247.3 29.9 235 326-585 239-474 (475)
33 PRK09467 envZ osmolarity senso 99.9 6E-26 1.3E-30 244.2 28.3 228 322-585 207-434 (435)
34 COG5000 NtrY Signal transducti 99.9 1.1E-24 2.4E-29 222.3 35.4 211 344-584 486-708 (712)
35 PRK11073 glnL nitrogen regulat 99.9 6.9E-26 1.5E-30 236.2 27.6 217 343-584 129-347 (348)
36 PRK10600 nitrate/nitrite senso 99.9 4.8E-23 1E-27 228.5 48.7 358 123-586 199-558 (569)
37 PRK11360 sensory histidine kin 99.9 1.1E-24 2.3E-29 244.6 29.5 213 343-585 389-602 (607)
38 PRK11644 sensory histidine kin 99.9 1.9E-23 4.1E-28 225.6 32.6 248 288-584 245-494 (495)
39 KOG0519 Sensory transduction h 99.9 2.4E-27 5.2E-32 265.7 0.9 628 2-629 30-683 (786)
40 COG0642 BaeS Signal transducti 99.9 3.1E-23 6.6E-28 213.8 29.8 218 343-587 114-332 (336)
41 COG3850 NarQ Signal transducti 99.9 3.1E-21 6.8E-26 195.2 43.1 341 122-583 224-567 (574)
42 PRK13560 hypothetical protein; 99.9 1.5E-23 3.3E-28 243.5 25.9 209 331-585 592-804 (807)
43 COG4192 Signal transduction hi 99.9 5.5E-22 1.2E-26 195.3 27.9 213 343-585 450-667 (673)
44 PRK11086 sensory histidine kin 99.9 2.4E-21 5.3E-26 214.6 22.3 195 344-587 339-538 (542)
45 PRK15053 dpiB sensor histidine 99.9 1.2E-20 2.6E-25 208.9 26.0 194 347-585 341-540 (545)
46 COG3290 CitA Signal transducti 99.9 3.8E-18 8.3E-23 174.8 41.5 195 346-587 335-534 (537)
47 PRK10935 nitrate/nitrite senso 99.9 2.8E-17 6.1E-22 183.0 46.1 188 351-585 367-560 (565)
48 COG3851 UhpB Signal transducti 99.8 1.4E-17 3E-22 159.9 28.6 245 290-583 248-493 (497)
49 PRK13559 hypothetical protein; 99.8 7.3E-19 1.6E-23 184.2 20.7 185 344-585 170-360 (361)
50 PF02518 HATPase_c: Histidine 99.8 1.4E-19 3E-24 155.1 9.4 109 455-584 1-110 (111)
51 COG4585 Signal transduction hi 99.8 1.6E-16 3.6E-21 166.0 29.4 195 342-584 169-365 (365)
52 PRK10547 chemotaxis protein Ch 99.7 2.8E-16 6.1E-21 171.6 20.4 146 417-586 343-525 (670)
53 COG4564 Signal transduction hi 99.7 7.4E-13 1.6E-17 126.2 36.7 204 340-587 247-450 (459)
54 COG3920 Signal transduction hi 99.6 1E-12 2.2E-17 125.3 26.7 196 343-587 18-218 (221)
55 COG0643 CheA Chemotaxis protei 99.6 1.1E-13 2.4E-18 152.0 19.9 147 416-586 389-575 (716)
56 COG3275 LytS Putative regulato 99.6 9.4E-11 2E-15 117.8 37.8 317 164-588 228-555 (557)
57 PRK04184 DNA topoisomerase VI 99.5 3.7E-13 8.1E-18 142.0 14.7 146 454-623 31-185 (535)
58 smart00387 HATPase_c Histidine 99.5 8.3E-13 1.8E-17 112.3 12.9 110 455-585 1-111 (111)
59 PRK14868 DNA topoisomerase VI 99.3 4.1E-11 8.9E-16 129.0 13.8 130 436-587 22-162 (795)
60 cd00075 HATPase_c Histidine ki 99.3 4.8E-11 1E-15 99.7 10.8 101 460-582 1-103 (103)
61 PRK15429 formate hydrogenlyase 99.2 1E-09 2.2E-14 123.9 24.3 188 129-330 170-364 (686)
62 KOG0519 Sensory transduction h 99.2 2.9E-12 6.3E-17 144.6 3.7 241 347-590 224-494 (786)
63 TIGR01925 spIIAB anti-sigma F 99.2 1.5E-10 3.2E-15 103.0 12.3 97 456-582 36-136 (137)
64 TIGR01052 top6b DNA topoisomer 99.2 9.8E-11 2.1E-15 122.5 12.3 111 453-584 22-142 (488)
65 COG2972 Predicted signal trans 99.2 2.6E-09 5.6E-14 114.8 22.3 95 460-585 351-453 (456)
66 PRK03660 anti-sigma F factor; 99.2 3.5E-10 7.7E-15 101.8 12.9 103 456-588 36-142 (146)
67 PRK11061 fused phosphoenolpyru 99.2 2.4E-09 5.3E-14 120.1 22.2 160 143-316 2-163 (748)
68 PRK14867 DNA topoisomerase VI 99.1 3.8E-10 8.3E-15 121.6 12.3 112 456-587 33-152 (659)
69 PF00512 HisKA: His Kinase A ( 99.1 8.3E-10 1.8E-14 84.9 9.9 65 344-408 2-68 (68)
70 PRK04069 serine-protein kinase 99.0 3.2E-09 7E-14 96.8 13.1 106 456-589 39-148 (161)
71 KOG0787 Dehydrogenase kinase [ 99.0 1.4E-07 3E-12 92.6 21.3 189 377-587 172-383 (414)
72 TIGR01817 nifA Nif-specific re 98.9 1.1E-07 2.3E-12 104.6 20.0 159 143-315 4-164 (534)
73 TIGR01924 rsbW_low_gc serine-p 98.8 4.3E-08 9.4E-13 89.0 12.2 104 457-588 40-147 (159)
74 PF13492 GAF_3: GAF domain; PD 98.8 1.2E-07 2.5E-12 83.1 12.9 129 158-309 1-129 (129)
75 COG3605 PtsP Signal transducti 98.6 1.3E-06 2.7E-11 90.5 17.0 155 145-313 4-160 (756)
76 PF01590 GAF: GAF domain; Int 98.6 2.2E-07 4.7E-12 84.1 10.0 136 158-307 1-154 (154)
77 PF14501 HATPase_c_5: GHKL dom 98.6 6.7E-07 1.4E-11 74.5 12.1 95 456-583 2-100 (100)
78 PRK15429 formate hydrogenlyase 98.6 1.9E-06 4.2E-11 97.5 19.3 172 143-329 8-183 (686)
79 PRK05022 anaerobic nitric oxid 98.5 6.8E-06 1.5E-10 89.6 19.1 167 143-324 3-173 (509)
80 PF13581 HATPase_c_2: Histidin 98.4 2.7E-06 6E-11 74.1 10.1 93 456-581 28-124 (125)
81 smart00388 HisKA His Kinase A 98.3 4.5E-06 9.8E-11 63.0 8.8 63 344-406 2-64 (66)
82 smart00065 GAF Domain present 98.3 1.5E-05 3.2E-10 70.3 13.4 144 158-315 1-147 (149)
83 COG1389 DNA topoisomerase VI, 98.2 7.8E-06 1.7E-10 82.5 10.4 117 456-591 33-157 (538)
84 PF13185 GAF_2: GAF domain; PD 98.2 1.3E-05 2.9E-10 71.7 10.6 135 157-308 2-148 (148)
85 TIGR00585 mutl DNA mismatch re 98.0 2.9E-05 6.3E-10 79.0 10.6 97 458-581 21-125 (312)
86 COG2172 RsbW Anti-sigma regula 98.0 8E-05 1.7E-09 66.1 12.0 90 456-575 37-131 (146)
87 cd00082 HisKA Histidine Kinase 97.9 8.6E-05 1.9E-09 55.5 8.5 61 344-404 4-65 (65)
88 COG3604 FhlA Transcriptional r 97.7 0.00092 2E-08 69.3 15.4 175 143-332 33-213 (550)
89 COG2203 FhlA FOG: GAF domain [ 97.5 0.00015 3.3E-09 66.0 4.9 159 143-315 3-170 (175)
90 PF13589 HATPase_c_3: Histidin 97.4 4.1E-05 9E-10 67.7 0.6 99 461-584 4-107 (137)
91 PRK00095 mutL DNA mismatch rep 97.4 0.0007 1.5E-08 75.3 9.7 85 459-570 22-113 (617)
92 PRK13558 bacterio-opsin activa 97.2 0.014 3E-07 66.6 18.7 146 145-310 289-438 (665)
93 PRK05559 DNA topoisomerase IV 96.3 0.0085 1.8E-07 66.7 7.3 101 456-583 34-148 (631)
94 PRK05218 heat shock protein 90 96.0 0.011 2.4E-07 65.6 6.4 55 512-570 74-141 (613)
95 COG0323 MutL DNA mismatch repa 95.8 0.0074 1.6E-07 67.0 3.9 60 460-541 24-83 (638)
96 PF07568 HisKA_2: Histidine ki 95.8 0.12 2.7E-06 40.1 9.6 73 351-432 2-74 (76)
97 PRK14083 HSP90 family protein; 95.4 0.0078 1.7E-07 66.1 2.1 49 462-531 26-83 (601)
98 PRK05644 gyrB DNA gyrase subun 95.4 0.057 1.2E-06 60.2 8.7 83 456-559 34-130 (638)
99 PF11849 DUF3369: Domain of un 95.3 1 2.3E-05 41.4 15.5 151 131-317 9-172 (174)
100 PTZ00272 heat shock protein 83 94.9 0.015 3.3E-07 64.8 2.6 21 511-531 72-92 (701)
101 TIGR01059 gyrB DNA gyrase, B s 94.8 0.18 4E-06 56.6 10.8 50 456-526 27-77 (654)
102 COG0326 HtpG Molecular chapero 94.7 0.051 1.1E-06 58.7 5.6 46 464-529 32-92 (623)
103 TIGR01055 parE_Gneg DNA topois 94.3 0.14 3E-06 57.0 8.1 78 460-560 31-124 (625)
104 PF04340 DUF484: Protein of un 94.1 0.46 9.9E-06 45.9 10.5 160 123-308 53-221 (225)
105 COG5385 Uncharacterized protei 93.6 4.8 0.0001 35.6 18.5 192 347-582 18-212 (214)
106 smart00433 TOP2c Topoisomerase 93.6 0.095 2E-06 58.1 5.2 78 460-558 2-93 (594)
107 COG5381 Uncharacterized protei 93.3 0.15 3.2E-06 43.7 4.7 52 458-529 62-113 (184)
108 PTZ00130 heat shock protein 90 93.3 0.088 1.9E-06 59.1 4.3 18 512-529 136-153 (814)
109 PRK14939 gyrB DNA gyrase subun 92.6 0.38 8.2E-06 54.3 8.1 48 458-526 36-84 (756)
110 COG1956 GAF domain-containing 92.4 5.9 0.00013 35.1 13.4 121 163-305 37-158 (163)
111 KOG1979 DNA mismatch repair pr 89.2 0.49 1.1E-05 50.2 4.5 58 461-540 29-86 (694)
112 COG4251 Bacteriophytochrome (l 89.0 6.4 0.00014 42.8 12.5 47 151-197 140-186 (750)
113 PF10090 DUF2328: Uncharacteri 88.6 20 0.00044 33.1 18.7 169 361-570 3-174 (182)
114 PF14689 SPOB_a: Sensor_kinase 88.1 2.7 5.9E-05 31.1 6.7 45 347-395 15-59 (62)
115 KOG1978 DNA mismatch repair pr 86.5 0.86 1.9E-05 49.6 4.5 59 460-540 21-79 (672)
116 PLN03237 DNA topoisomerase 2; 86.0 1 2.2E-05 54.0 5.2 100 458-583 76-192 (1465)
117 PTZ00108 DNA topoisomerase 2-l 85.3 1.5 3.3E-05 52.7 6.2 104 458-585 56-177 (1388)
118 TIGR01058 parE_Gpos DNA topois 83.3 0.91 2E-05 50.7 3.1 48 456-526 31-81 (637)
119 KOG1977 DNA mismatch repair pr 81.1 2.3 5.1E-05 46.3 4.9 57 459-538 21-77 (1142)
120 PHA02569 39 DNA topoisomerase 80.8 1.1 2.5E-05 49.6 2.7 51 512-562 80-145 (602)
121 PLN03128 DNA topoisomerase 2; 80.0 3 6.4E-05 49.6 5.9 103 458-584 51-168 (1135)
122 PRK10963 hypothetical protein; 79.8 59 0.0013 31.2 16.5 63 123-186 50-116 (223)
123 PF07730 HisKA_3: Histidine ki 78.5 20 0.00043 26.7 8.3 56 344-399 2-59 (68)
124 PTZ00109 DNA gyrase subunit b; 71.7 0.78 1.7E-05 52.2 -1.6 50 457-527 127-177 (903)
125 COG0187 GyrB Type IIA topoisom 71.4 1.1 2.5E-05 48.4 -0.4 99 458-585 35-149 (635)
126 PRK05415 hypothetical protein; 67.3 94 0.002 31.8 12.1 89 85-173 98-197 (341)
127 PF05297 Herpes_LMP1: Herpesvi 66.7 1.9 4E-05 41.6 0.0 34 16-49 36-77 (381)
128 PF07536 HWE_HK: HWE histidine 65.8 56 0.0012 25.8 8.2 69 351-431 2-70 (83)
129 COG5393 Predicted membrane pro 65.5 80 0.0017 26.4 9.6 52 51-108 53-104 (131)
130 TIGR01620 hyp_HI0043 conserved 63.9 1.4E+02 0.0031 29.7 12.3 112 58-172 22-145 (289)
131 COG4587 ABC-type uncharacteriz 63.0 62 0.0013 31.2 9.2 81 17-98 103-189 (268)
132 COG3159 Uncharacterized protei 62.3 76 0.0016 29.8 9.4 64 123-186 51-118 (218)
133 PF07851 TMPIT: TMPIT-like pro 58.7 2.2E+02 0.0047 29.1 13.3 69 333-403 23-91 (330)
134 COG4377 Predicted membrane pro 58.5 25 0.00053 32.4 5.5 38 28-65 14-51 (258)
135 PRK10263 DNA translocase FtsK; 54.5 1E+02 0.0023 37.3 11.1 16 26-41 77-92 (1355)
136 PF07495 Y_Y_Y: Y_Y_Y domain; 53.9 16 0.00034 27.1 3.1 48 242-291 2-57 (66)
137 KOG3814 Signaling protein van 51.3 81 0.0018 32.2 8.3 22 32-53 167-188 (531)
138 PF06103 DUF948: Bacterial pro 50.4 1.3E+02 0.0028 24.0 9.3 56 99-154 8-64 (90)
139 KOG0355 DNA topoisomerase type 49.9 21 0.00046 40.2 4.4 53 455-527 49-102 (842)
140 PF15449 Retinal: Retinal prot 48.1 4.2E+02 0.009 31.4 13.9 47 455-530 322-368 (1287)
141 PF03729 DUF308: Short repeat 47.9 1E+02 0.0022 22.9 7.0 54 46-104 16-69 (72)
142 PF14965 BRI3BP: Negative regu 46.9 1.6E+02 0.0036 26.7 8.7 22 120-141 155-176 (177)
143 PRK12585 putative monovalent c 46.1 2.5E+02 0.0053 26.0 10.3 29 19-48 4-32 (197)
144 PF10856 DUF2678: Protein of u 46.0 40 0.00086 28.2 4.4 17 33-49 71-87 (118)
145 KOG3689 Cyclic nucleotide phos 44.1 1.7E+02 0.0037 33.0 10.3 171 140-322 163-345 (707)
146 PF10754 DUF2569: Protein of u 44.0 2.3E+02 0.005 25.1 9.9 43 20-62 54-97 (149)
147 PF10966 DUF2768: Protein of u 43.5 78 0.0017 23.0 5.0 35 26-60 5-40 (58)
148 PF10883 DUF2681: Protein of u 40.7 1.9E+02 0.004 23.1 7.4 19 89-107 6-24 (87)
149 COG3462 Predicted membrane pro 40.5 2.1E+02 0.0046 23.6 8.0 68 51-118 8-80 (117)
150 PF10086 DUF2324: Putative mem 40.1 1.4E+02 0.0029 28.7 7.9 37 32-68 2-38 (223)
151 COG4708 Predicted membrane pro 39.8 1.5E+02 0.0033 25.9 7.1 50 25-74 74-126 (169)
152 PF06305 DUF1049: Protein of u 39.8 1.4E+02 0.003 22.1 6.5 13 127-139 51-63 (68)
153 PF10131 PTPS_related: 6-pyruv 39.8 2.5E+02 0.0054 31.7 11.0 55 18-73 69-123 (616)
154 PF06018 CodY: CodY GAF-like d 39.1 3.1E+02 0.0067 25.2 10.8 40 271-311 118-157 (177)
155 PF14248 DUF4345: Domain of un 37.7 2.6E+02 0.0056 23.8 9.2 51 29-81 51-101 (124)
156 PF06785 UPF0242: Uncharacteri 37.5 4.5E+02 0.0097 26.6 17.2 81 324-404 140-225 (401)
157 PF05449 DUF754: Protein of un 37.4 1.7E+02 0.0037 23.1 6.6 39 29-69 4-43 (83)
158 PF10066 DUF2304: Uncharacteri 37.3 2.5E+02 0.0054 23.6 9.4 10 39-48 19-28 (115)
159 PF06570 DUF1129: Protein of u 37.0 3.6E+02 0.0079 25.3 11.0 31 18-48 78-108 (206)
160 PF06638 Strabismus: Strabismu 36.4 1.3E+02 0.0028 32.3 7.5 9 466-474 450-458 (505)
161 PTZ00271 hypoxanthine-guanine 36.4 82 0.0018 29.9 5.7 15 609-623 115-129 (211)
162 PF02652 Lactate_perm: L-lacta 35.5 2E+02 0.0043 31.6 9.1 77 21-108 177-253 (522)
163 PF11177 DUF2964: Protein of u 35.2 1.8E+02 0.004 21.4 6.2 28 50-77 5-32 (62)
164 cd08766 Cyt_b561_ACYB-1_like P 35.0 3.2E+02 0.0069 24.1 10.1 10 70-79 94-103 (144)
165 PF00556 LHC: Antenna complex 34.7 71 0.0015 21.2 3.5 25 50-74 10-34 (40)
166 COG3071 HemY Uncharacterized e 33.8 1.5E+02 0.0033 30.7 7.3 41 344-384 248-288 (400)
167 PF14979 TMEM52: Transmembrane 32.7 41 0.00089 29.3 2.6 18 51-68 21-38 (154)
168 PRK15423 hypoxanthine phosphor 32.7 1E+02 0.0023 28.3 5.6 15 609-623 89-103 (178)
169 PF14150 YesK: YesK-like prote 31.3 2.6E+02 0.0056 22.0 9.4 48 27-76 3-51 (81)
170 PRK13661 hypothetical protein; 30.9 2.9E+02 0.0062 25.6 8.1 45 53-98 107-157 (182)
171 PRK09162 hypoxanthine-guanine 29.2 1.4E+02 0.0031 27.5 5.9 15 609-623 94-108 (181)
172 PF04791 LMBR1: LMBR1-like mem 29.1 7.5E+02 0.016 26.6 16.6 36 9-44 69-105 (471)
173 PF13974 YebO: YebO-like prote 28.7 2E+02 0.0043 22.5 5.5 16 99-114 8-23 (80)
174 COG4960 CpaA Flp pilus assembl 28.2 3.5E+02 0.0076 24.5 7.7 45 25-69 2-49 (168)
175 PTZ00127 cytochrome c oxidase 27.9 7.5E+02 0.016 26.2 11.7 36 69-107 364-399 (403)
176 KOG1608 Protein transporter of 27.8 6.1E+02 0.013 25.3 9.8 21 59-79 255-275 (374)
177 PF11847 DUF3367: Domain of un 27.2 3.1E+02 0.0068 30.9 8.8 88 23-115 124-221 (680)
178 COG3768 Predicted membrane pro 27.0 6.6E+02 0.014 25.3 11.7 45 76-123 90-134 (350)
179 TIGR02921 PEP_integral PEP-CTE 26.5 3.3E+02 0.0073 29.9 8.5 38 29-67 158-199 (952)
180 COG2236 Predicted phosphoribos 26.5 35 0.00076 31.7 1.4 21 610-630 85-105 (192)
181 PF07332 DUF1469: Protein of u 26.4 3.9E+02 0.0085 22.4 9.4 12 126-137 108-119 (121)
182 PF06181 DUF989: Protein of un 26.3 2.4E+02 0.0053 27.9 7.0 45 32-77 230-277 (300)
183 KOG0020 Endoplasmic reticulum 25.6 62 0.0013 34.2 3.0 16 512-527 143-158 (785)
184 PF12725 DUF3810: Protein of u 25.3 1.2E+02 0.0027 30.8 5.2 23 23-45 25-47 (318)
185 PF11152 DUF2930: Protein of u 24.9 2E+02 0.0044 26.8 6.0 73 210-302 120-193 (195)
186 KOG3088 Secretory carrier memb 24.5 87 0.0019 30.8 3.6 23 319-341 65-87 (313)
187 TIGR00799 mtp Golgi 4-transmem 24.4 4.4E+02 0.0095 25.2 7.9 45 18-62 56-101 (258)
188 TIGR03063 srtB_target sortase 24.1 88 0.0019 19.2 2.3 16 32-47 12-29 (29)
189 TIGR00219 mreC rod shape-deter 23.8 4.8E+02 0.01 26.0 8.9 12 613-624 266-277 (283)
190 COG1620 LldP L-lactate permeas 23.7 3.5E+02 0.0076 29.4 8.2 76 26-112 184-260 (522)
191 PF14936 p53-inducible11: Tumo 23.5 4.9E+02 0.011 23.6 7.7 6 19-24 55-60 (179)
192 COG0813 DeoD Purine-nucleoside 23.1 97 0.0021 29.3 3.5 52 452-524 18-69 (236)
193 PF11833 DUF3353: Protein of u 23.0 5.5E+02 0.012 24.0 8.5 38 38-75 127-164 (194)
194 PF07492 Trehalase_Ca-bi: Neut 22.9 58 0.0013 20.0 1.3 11 511-521 14-24 (30)
195 KOG2493 Na+/Pi symporter [Inor 22.8 3.3E+02 0.0072 29.1 7.6 38 41-79 185-222 (512)
196 cd07955 Anticodon_Ia_Cys_like 22.8 2.4E+02 0.0052 22.0 5.3 27 343-369 29-57 (81)
197 MTH00145 CYTB cytochrome b; Pr 22.8 5.2E+02 0.011 27.1 9.2 88 18-105 42-134 (379)
198 COG4097 Predicted ferric reduc 22.6 6.9E+02 0.015 26.0 9.5 62 27-89 130-193 (438)
199 PF06703 SPC25: Microsomal sig 22.6 2.1E+02 0.0046 25.7 5.7 24 21-44 23-46 (162)
200 PF04279 IspA: Intracellular s 22.5 6E+02 0.013 23.3 11.0 26 51-76 116-141 (176)
201 cd08765 Cyt_b561_CYBRD1 Verteb 22.5 5.6E+02 0.012 22.9 10.0 8 72-79 103-110 (153)
202 PRK00247 putative inner membra 22.3 9.7E+02 0.021 25.6 12.0 16 53-68 229-244 (429)
203 PRK10697 DNA-binding transcrip 22.3 3.3E+02 0.0071 23.2 6.2 6 105-110 59-64 (118)
204 PRK14872 rod shape-determining 22.3 6.8E+02 0.015 25.7 9.6 48 91-142 35-82 (337)
205 PF06105 Aph-1: Aph-1 protein; 22.2 2E+02 0.0044 27.8 5.6 47 32-80 12-58 (238)
206 PF13491 DUF4117: Domain of un 22.1 5E+02 0.011 23.2 8.2 53 21-73 52-112 (171)
207 PTZ00149 hypoxanthine phosphor 22.0 1.8E+02 0.004 28.2 5.4 16 609-624 147-162 (241)
208 COG2820 Udp Uridine phosphoryl 21.9 2.1E+02 0.0046 27.5 5.6 52 451-524 20-71 (248)
209 COG4420 Predicted membrane pro 21.5 6.5E+02 0.014 23.3 11.1 14 80-93 86-99 (191)
210 KOG2391 Vacuolar sorting prote 21.5 8.8E+02 0.019 24.8 12.4 21 413-433 327-347 (365)
211 PF11694 DUF3290: Protein of u 21.2 4.3E+02 0.0093 23.5 7.1 40 26-65 21-60 (149)
212 COG4965 TadB Flp pilus assembl 20.8 6.9E+02 0.015 25.3 9.1 33 144-176 140-172 (309)
213 COG2865 Predicted transcriptio 20.2 3E+02 0.0065 29.6 6.9 97 461-586 272-382 (467)
214 KOG0019 Molecular chaperone (H 20.0 74 0.0016 34.8 2.4 18 511-528 102-119 (656)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-46 Score=391.68 Aligned_cols=391 Identities=22% Similarity=0.327 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccc
Q 006706 122 LKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI 201 (634)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~ 201 (634)
..+++.+++++....++++++.+.++++++.+..+...+.++..+.+++.++++. ++.+++++.++....+ ...+.
T Consensus 488 t~~Lt~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~~~~~-~v~i~l~~~~~~~~~~--~~~~~- 563 (890)
T COG2205 488 TGNLTARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIASLLNQ-RVVILLPDDNGKLQPL--GNPDG- 563 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC-ceEEEEecCCcccccc--cCCcc-
Confidence 4677888899999999999999999999999999999999999999999999988 6777788766544111 11110
Q ss_pred cccccccc-CChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEe
Q 006706 202 QIGSSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML 280 (634)
Q Consensus 202 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~ 280 (634)
+.. +.....+++.++++-- .+....|....+..| +..++...||+.+
T Consensus 564 -----l~~~d~aaa~W~~~~~~~AG-------------~gTdTlpg~~~~~lP--------------l~~~~~~~gvlgv 611 (890)
T COG2205 564 -----LSADDRAAAQWAFENGKPAG-------------AGTDTLPGAKYLYLP--------------LKSGGKVLGVLGV 611 (890)
T ss_pred -----ccHHHHHHhhchhhCCCccc-------------cCCCCCCCCceeEee--------------cccCCceEEEEEe
Confidence 111 1112234444333211 111112233333344 4455667888888
Q ss_pred cCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006706 281 PTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMH 360 (634)
Q Consensus 281 ~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~ 360 (634)
.........+++..++..+++|++.|+++..+.++..+.+-+ .+..+.++.|++++||||||||+
T Consensus 612 ~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~---------------~e~E~lRsaLL~sISHDLRTPLt 676 (890)
T COG2205 612 EPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA---------------AERERLRSALLASISHDLRTPLT 676 (890)
T ss_pred cCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhccccCcHH
Confidence 888777789999999999999999999999887765544311 12234578999999999999999
Q ss_pred HHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcC
Q 006706 361 AIIALSSLLLET--DL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCK 437 (634)
Q Consensus 361 ~I~~~~~~l~~~--~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~ 437 (634)
+|.|.++.|... .+ +++..+.+..|.+.++++..++.+|++++|+++|.+.++.++..+.+++.+++..++.....
T Consensus 677 ~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~~veEvVg~Al~r~~k~~~~- 755 (890)
T COG2205 677 AIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRFTG- 755 (890)
T ss_pred HHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccchhhHHHHHHHHHHHhhhhcCC-
Confidence 999999999864 33 44477899999999999999999999999999999999999999999999999988876544
Q ss_pred CceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEE
Q 006706 438 KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVN 516 (634)
Q Consensus 438 ~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 516 (634)
..+.++++.+++. +..|...+.||+.||++||.||++++. +.+.+....+. +.|+|.
T Consensus 756 -~~i~v~~~~dl~l-i~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~--------------------v~~~V~ 813 (890)
T COG2205 756 -HKIVVSVPVDLPL-IHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVEREN--------------------VVFSVI 813 (890)
T ss_pred -ceEEEecCCCCce-EecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecce--------------------EEEEEE
Confidence 4467777777775 778999999999999999999999876 66776665543 999999
Q ss_pred EcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006706 517 DSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 517 D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~ 588 (634)
|+|+|||+++.++||++||+....+. ..|+||||+||+.+++.|||+|++++. +++|++|+|.||....+
T Consensus 814 DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G~GLGLsIc~~iv~ahgG~I~a~~~-~~gGa~f~~~LP~~~~~ 883 (890)
T COG2205 814 DEGPGIPEGELERIFDKFYRGNKESA-TRGVGLGLAICRGIVEAHGGTISAENN-PGGGAIFVFTLPVEEDP 883 (890)
T ss_pred eCCCCCChhHHHHhhhhhhcCCCCCC-CCCccccHHHHHHHHHHcCCeEEEEEc-CCCceEEEEEeecCCCC
Confidence 99999999999999999999877554 669999999999999999999999998 89999999999987554
No 2
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=9.7e-40 Score=375.69 Aligned_cols=265 Identities=29% Similarity=0.469 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceee
Q 006706 338 EKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 417 (634)
+++++.+.+|++.++||+||||++|.|+++++.+...+++++++++.+..+++++..++++++++++++.+...+...++
T Consensus 277 ~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~ 356 (779)
T PRK11091 277 EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPI 356 (779)
T ss_pred HHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEeecc
Confidence 34445678999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCC
Q 006706 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~ 497 (634)
++.++++++...+...+..+++.+.++.+.+.|..+.+|+.++.||+.||++||+||+++|.+.+.+....++
T Consensus 357 ~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~------- 429 (779)
T PRK11091 357 DFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEEGD------- 429 (779)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEccCC-------
Confidence 9999999999999999999999999998888887788999999999999999999999989888887765333
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccC-CCCCC-CCCccccHHHHHHHHHHhCCEEEEEecCCCCc
Q 006706 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR-GSSCQ-TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKG 575 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~-~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~G 575 (634)
.+.|+|+|||+|||++.++++|+|||+++ ..... ..|+|+||++||++++.|||+|+++|. +|+|
T Consensus 430 ------------~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~-~g~G 496 (779)
T PRK11091 430 ------------MLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSE-EGKG 496 (779)
T ss_pred ------------EEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEec-CCCe
Confidence 39999999999999999999999999985 32222 459999999999999999999999999 9999
Q ss_pred eEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhhh
Q 006706 576 STVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 576 t~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~~ 630 (634)
|+|++++|++..+....... .......++.+|||||||+.+|.+++.
T Consensus 497 t~f~i~lP~~~~~~~~~~~~--------~~~~~~~~~~~ILivdD~~~~~~~l~~ 543 (779)
T PRK11091 497 SCFTLTIHAPAVAEEVEDAF--------DEDDMPLPALNILLVEDIELNVIVARS 543 (779)
T ss_pred EEEEEEEecccccccccccc--------ccccccccccceEEEcCCHHHHHHHHH
Confidence 99999999976543221110 111223467899999999999998653
No 3
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=6e-38 Score=359.22 Aligned_cols=388 Identities=22% Similarity=0.328 Sum_probs=286.3
Q ss_pred HHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccccc
Q 006706 124 NRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI 203 (634)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~ 203 (634)
.++.+++++....++++++.+.|+++++.+....+.++++..+.+.+.+.++.+ +++|++++++.........
T Consensus 493 ~l~~r~r~~a~~a~~re~~~~~L~els~~L~~a~~~~~i~~~~~~~l~~~~~~~-~~l~l~~~~g~~~~~~~~~------ 565 (895)
T PRK10490 493 NLTAGVRYQARVARYREQRTRHLYEMSKALAVGLSPEDIAATSEHFLASTFQAR-SQLLLPDDNGKLQPLTHDQ------ 565 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCC-EEEEEEcCCCccccccccc------
Confidence 345555666666788899999999999999999999999999999999999975 5678887665432211110
Q ss_pred ccccccCChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCC
Q 006706 204 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (634)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (634)
...+.+.....+++....+.... ....+......+|+. .++..+|++++...
T Consensus 566 -~~~~~~~~~~~w~~~~~~~~g~~-------------~~tl~~~~~~~lPl~--------------~~~~~~Gvl~l~~~ 617 (895)
T PRK10490 566 -GMTPWDDAIARWSFDKGQPAGAG-------------TDTLPGVPYQILPLK--------------SAQKTYGLLAVEPG 617 (895)
T ss_pred -cccchHHHHHHHHHhcCCccccC-------------cCcCCCCceEEEEEE--------------ECCEEEEEEEEecC
Confidence 00111122223333332221100 001122333445543 33445777777654
Q ss_pred C-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006706 284 G-GRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (634)
Q Consensus 284 ~-~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I 362 (634)
. ...|++++..+++.++.+++.++++..+..+..+.+ ...+..+.+++|++.++||+||||++|
T Consensus 618 ~~~~~~~~~~~~ll~~la~~~a~aler~~l~~~~~~~~---------------l~~e~e~lr~~lla~isHELrtPLt~I 682 (895)
T PRK10490 618 NLRQLMIPEQQRLLETFTLLIANALERLTLTASEEQAR---------------LASEREQLRNALLAALSHDLRTPLTVL 682 (895)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 4 457889999999999999999998765433211110 111123346789999999999999999
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCce
Q 006706 363 IALSSLLLETD--LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (634)
Q Consensus 363 ~~~~~~l~~~~--~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (634)
.++++++.... ...+..+.++.+.+.+.++..++++++++++++.+...+..+++++.+++++++..+......+++.
T Consensus 683 ~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L~eli~~~l~~l~~~~~~~~i~ 762 (895)
T PRK10490 683 FGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALQMLEPGLSGHPIN 762 (895)
T ss_pred HHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999886432 2233446788899999999999999999999999988889999999999999999998776655554
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcC
Q 006706 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 519 (634)
Q Consensus 441 ~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G 519 (634)
++++.+.+ .+.+|+..+.||+.||++||+||++++. +.+.+....+ .+.|+|+|+|
T Consensus 763 --l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~--------------------~v~I~V~D~G 819 (895)
T PRK10490 763 --LSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE--------------------RLQLDVWDNG 819 (895)
T ss_pred --EEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC--------------------EEEEEEEECC
Confidence 44555554 4778999999999999999999998754 5555543322 3899999999
Q ss_pred CCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006706 520 CGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 520 ~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
+||+++..+++|+||++.+... ...|+|+||++||++++.|||+|+++|. +++||+|++.||+..
T Consensus 820 ~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Ivk~ive~hGG~I~v~s~-~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 820 PGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAICRAIVEVHGGTIWAENR-PEGGACFRVTLPLET 884 (895)
T ss_pred CCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHHHHHHHHcCCEEEEEEC-CCCeEEEEEEeECCC
Confidence 9999999999999999876542 3359999999999999999999999998 899999999999853
No 4
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=1e-39 Score=369.56 Aligned_cols=275 Identities=21% Similarity=0.301 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006706 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (634)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 405 (634)
.++++++++++++++++.+++|+++++||+||||++|.++++.+.....+++.+++++.+.++++++..+++++++++++
T Consensus 432 ~~~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrl 511 (894)
T PRK10618 432 VNKKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNML 511 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777788888888999999999999999999999999999887778888999999999999999999999999999
Q ss_pred hCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEE
Q 006706 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAS 485 (634)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~ 485 (634)
+.+...+..+++++.+++++++..+...++.+++.+.+..+.+.+..+.+|+.++.||+.||++||+||++.|.+.+.+.
T Consensus 512 e~~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~ 591 (894)
T PRK10618 512 ETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVD 591 (894)
T ss_pred hcCCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999887666667889999999999999999999999998888776
Q ss_pred eecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEE
Q 006706 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHI 565 (634)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i 565 (634)
..... ..++.|+|+|+|+||+++.++++|+||++++......+|+||||+|||++++.|||+|
T Consensus 592 ~~~~~-----------------~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~k~Lve~~GG~I 654 (894)
T PRK10618 592 QDESS-----------------PDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLCNQLCRKLGGHL 654 (894)
T ss_pred EccCC-----------------CcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHHHHHHHHcCCEE
Confidence 54322 1259999999999999999999999999977654445699999999999999999999
Q ss_pred EEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006706 566 WLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 566 ~v~s~~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+++|. +|+||+|+|+||+.....+.. ......+.|.+||||||++.+|.+++
T Consensus 655 ~v~S~-~g~GT~F~I~LPl~~~~~~~~-----------~~~~~~l~g~~vLlvdD~~~~r~~l~ 706 (894)
T PRK10618 655 TIKSR-EGLGTRYSIHLKMLAADPEVE-----------EEEEKLLDGVTVLLDITSEEVRKIVT 706 (894)
T ss_pred EEEEC-CCCcEEEEEEEEccCCccccc-----------ccccccCCCCEEEEEeCCHHHHHHHH
Confidence 99999 999999999999853322111 01123357899999999999998854
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1.3e-36 Score=349.63 Aligned_cols=447 Identities=16% Similarity=0.201 Sum_probs=300.4
Q ss_pred HHHHHHhhhhchHHHhHHHHHHHHHHhcccChh--HHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEe-eccccccc
Q 006706 128 ELDREMGLILTQEETGRHVRMLTHEIRSTLDRH--TILKTTLVELGRTLGLEECALWMPSRTGLNLELSYT-LNNQIQIG 204 (634)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~--~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~~ 204 (634)
.+++....++++.+..+.+..++..+....+.+ ..+...+..+.+.++.+.|++++.+.++........ ....
T Consensus 261 ~~~~~~~~l~~r~~~e~~l~~l~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 336 (828)
T PRK13837 261 RLRARTRVLRRRAAFEEVIAAISRCFEAASPHELEASIEAALGILAKFFDADSAALALVDVGGRARIWTFPGLTPD---- 336 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCeeeccCCccCCC----
Confidence 334444556667777778888888887765554 899999999999999999999998877765443211 0000
Q ss_pred ccccc-CChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCC
Q 006706 205 SSVPI-NLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (634)
Q Consensus 205 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (634)
..+.. ....+.............+........ ......+....+++|+. .++...+++.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------~~~~~~g~l~~~~~ 400 (828)
T PRK13837 337 PVWPDRLRALASTVKAAERDVVFVDRNGPVRKR--SCLTRRGPALWACLAFK--------------SGDRIVALLGLGRQ 400 (828)
T ss_pred CCchHHHHHHHHHHhccCCceEEeecccchhhh--cccccCCcceEEEEEec--------------cCCceEEEEEeccc
Confidence 00000 001111111122111111111111110 01112223334444432 23334555555433
Q ss_pred -CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006706 284 -GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (634)
Q Consensus 284 -~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I 362 (634)
....|..++..+++.++.+++.++.+.+...+..+.+++++ ++ +..+..++|+++++||+||||++|
T Consensus 401 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~l~-------~~-----~rl~~l~~~~~~iaHeLrtPL~~I 468 (828)
T PRK13837 401 RYGLRPPAGELQLLELALDCLAHAIERRRLETERDALERRLE-------HA-----RRLEAVGTLASGIAHNFNNILGAI 468 (828)
T ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-----HHHHHHHHHHHHhhHHhhhHHHHH
Confidence 23456689999999999999999877765544433332221 11 123457789999999999999999
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceE
Q 006706 363 IALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSM 441 (634)
Q Consensus 363 ~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~ 441 (634)
.++++++.+. ..+++..++++.+.+.++++..++++++++++... ...+++++.++++++...++... .+++.+
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~----~~~~~~~l~~ll~~~~~~~~~~~-~~~i~l 543 (828)
T PRK13837 469 LGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGE----RNTKPFDLSELVTEIAPLLRVSL-PPGVEL 543 (828)
T ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCcEEcHHHHHHHHHHHHHHHc-cCCcEE
Confidence 9999988754 34556778999999999999999999999998543 34568999999999999887543 467888
Q ss_pred EEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC
Q 006706 442 TLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (634)
Q Consensus 442 ~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 520 (634)
.++.+... ..+.+|+..+.||+.||++||+||+++ |.+.+.+........ .....+......++.|+|+|||+
T Consensus 544 ~~~~~~~~-~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~-----~~~~~~~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 544 DFDQDQEP-AVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAP-----KVLSHGVLPPGRYVLLRVSDTGA 617 (828)
T ss_pred EEEeCCCC-ceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccc-----cccccccCCCCCEEEEEEEECCC
Confidence 87765543 457889999999999999999999865 566666655421100 00000001122358999999999
Q ss_pred CCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCccc
Q 006706 521 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALK 600 (634)
Q Consensus 521 Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~ 600 (634)
||+++..+++|+||++++. +|+|+||++||++++.|||+|+++|. +|+||+|+|+||.....+.... .
T Consensus 618 GI~~e~~~~iFe~F~~~~~-----~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~~~~~------~ 685 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTRA-----GGTGLGLATVHGIVSAHAGYIDVQST-VGRGTRFDVYLPPSSKVPVAPQ------A 685 (828)
T ss_pred CCCHHHHHHhhCCcccCCC-----CCCcchHHHHHHHHHHCCCEEEEEec-CCCeEEEEEEEeCCCCCCCCcc------c
Confidence 9999999999999998764 58999999999999999999999999 8999999999998653322111 0
Q ss_pred CCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006706 601 GRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 601 ~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
...+...+..++.+|||||||+.++..++
T Consensus 686 ~~~~~~~~~~~~~~ILvVddd~~~~~~l~ 714 (828)
T PRK13837 686 FFGPGPLPRGRGETVLLVEPDDATLERYE 714 (828)
T ss_pred cCCCcccCCCCCCEEEEEcCCHHHHHHHH
Confidence 00111222346789999999999998753
No 6
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=8.5e-37 Score=351.33 Aligned_cols=242 Identities=31% Similarity=0.506 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 324 MEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (634)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~ 403 (634)
++.++++++++++++++++.+..|++.++||+||||++|.++++++.....+++.+++++.+.++++++..+++++++++
T Consensus 427 ~~~e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~s 506 (924)
T PRK10841 427 VKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFS 506 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777888888999999999999999999999999998888888899999999999999999999999999
Q ss_pred hhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEE
Q 006706 404 RLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSII 483 (634)
Q Consensus 404 ~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~ 483 (634)
+++.+...++.+++++.+++++++..+...+..+++.+.+.++++.+..+.+|+.++.||+.||++||+||++.|.+.+.
T Consensus 507 rie~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~ 586 (924)
T PRK10841 507 KIESEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLH 586 (924)
T ss_pred HhcCCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 99999999999999999999999999999999999999998888888778999999999999999999999999988887
Q ss_pred EEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHHHHHhC
Q 006706 484 ASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMG 562 (634)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~g 562 (634)
+...++ ++.|+|+|+|+||+++.++++|+||++.+.... ...|+||||++|+++++.||
T Consensus 587 v~~~~~--------------------~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~g 646 (924)
T PRK10841 587 VRVDGD--------------------YLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMD 646 (924)
T ss_pred EEEeCC--------------------EEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCC
Confidence 765432 499999999999999999999999998765433 33599999999999999999
Q ss_pred CEEEEEecCCCCceEEEEEEEecC
Q 006706 563 GHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 563 G~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
|+|+++|. +|+||+|+|.||+..
T Consensus 647 G~I~v~S~-~g~Gt~F~i~LP~~~ 669 (924)
T PRK10841 647 GDISVDSE-PGMGSQFTIRIPLYG 669 (924)
T ss_pred CEEEEEEc-CCCcEEEEEEEECCc
Confidence 99999999 999999999999853
No 7
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=3.7e-36 Score=355.15 Aligned_cols=270 Identities=32% Similarity=0.530 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q 006706 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 410 (634)
++++.+.+++++.+.+|++.++||+||||++|.++++++.+...+++.+++++.+.++++++..++++++++++++.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~ 530 (968)
T TIGR02956 451 AKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHL 530 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556667778889999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCC
Q 006706 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~ 490 (634)
.+..+++++.++++++...+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||++.|.+.+.+...++.
T Consensus 531 ~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~ 610 (968)
T TIGR02956 531 SISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDDS 610 (968)
T ss_pred eeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCC
Confidence 99999999999999999999999999999999999888887788999999999999999999999999888887665432
Q ss_pred CCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.+.|+|+|+|+||+++.++++|+||++.+. ....+|+|+||+|||++++.|||+|+++|.
T Consensus 611 -------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~ 670 (968)
T TIGR02956 611 -------------------SLLFEVEDTGCGIAEEEQATLFDAFTQADG-RRRSGGTGLGLAISQRLVEAMDGELGVESE 670 (968)
T ss_pred -------------------eEEEEEEeCCCCCCHHHHHHHHhhhhccCC-CCCCCCccHHHHHHHHHHHHcCCEEEEEec
Confidence 289999999999999999999999999883 334469999999999999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhhh
Q 006706 571 GLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 571 ~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~~ 630 (634)
+|+||+|+|.||+...+...... ........+.+|||||||+.++.+++.
T Consensus 671 -~~~Gt~f~~~lp~~~~~~~~~~~---------~~~~~~~~~~~iLvvdd~~~~~~~l~~ 720 (968)
T TIGR02956 671 -LGVGSCFWFTLPLTRGKPAEDSA---------TLTVIDLPPQRVLLVEDNEVNQMVAQG 720 (968)
T ss_pred -CCCcEEEEEEEEcCCCCcccccc---------ccccccccccceEEEcCcHHHHHHHHH
Confidence 99999999999987543322110 012233567799999999999988654
No 8
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=100.00 E-value=7.2e-34 Score=320.37 Aligned_cols=366 Identities=20% Similarity=0.239 Sum_probs=263.9
Q ss_pred HHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCCeEE
Q 006706 146 VRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMR 225 (634)
Q Consensus 146 l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (634)
+.++++.+.+..+.+++++.+++.+.+.++++.+++|+.++++..+.....++.+... ...+.+.+.+......+..+.
T Consensus 307 ~l~~~~~L~~~~~~~~l~~~~~~~l~~~l~~~~g~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~ 385 (679)
T TIGR02916 307 WLRFTQTLSEARSSDDLGERVIRALAQLVESPGGVLWLKSGNDGLYRPAARWNQPLAQ-AFEPSDSAFCQFLQESGWIIN 385 (679)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHhCCCCceEEEEcCCCCEEeeehhcCCCCcc-cCCCCCCHHHHHHHhCCCccc
Confidence 4678889999999999999999999999999999999998888766666555433222 234444555554444443333
Q ss_pred cCCCCchhhhhh---cccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecC-CCCCccchhhhHHHHHHHH
Q 006706 226 LPYNCPLARIRL---LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVAD 301 (634)
Q Consensus 226 l~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a~ 301 (634)
+.+....+.... ............+++|+.. .+. ..|++++.. ..++.++.++.++++.++.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vPL~~-------------~~~-~~G~l~l~~~~~~~~~~~e~~~lL~~l~~ 451 (679)
T TIGR02916 386 LEEARSEPDHYSGLVLPEWLREIPNAWLIVPLIS-------------GEE-LVGFVVLARPRTAGEFNWEVRDLLKTAGR 451 (679)
T ss_pred chhhcCCcccccccccchhhhcCCCceEEEEecc-------------CCE-EEEEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 332221111000 0000111123355666633 332 355555544 4566899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCH-HHHH
Q 006706 302 QVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQRV 380 (634)
Q Consensus 302 ~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~-~~~~ 380 (634)
|++.++++.+..++..+.+ ..+..+++.+.++||+|||++.+....+...+...++ ..++
T Consensus 452 q~a~~l~~~~~~~~l~~~~-------------------~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~ 512 (679)
T TIGR02916 452 QAASYLAQMEASEALAEAR-------------------QFEAFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDD 512 (679)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHH
Confidence 9999997766544322111 1223567888999999999999988887776554443 4567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHH
Q 006706 381 MIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRL 460 (634)
Q Consensus 381 ~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l 460 (634)
.++.+.+..+++.++++++.+... ..+..++++.++++++.+..+.. +..+.++++.+ ..+.+|+..+
T Consensus 513 ~l~~i~~~~~rl~~ll~~l~~~~~------~~~~~~~~l~~ll~~~~~~~~~~----~~~~~l~~~~~--~~v~~d~~~l 580 (679)
T TIGR02916 513 MLETVENAVNRMKKLLAQLRSKGL------EEEKLCVDLVDLLRRAIASKRAQ----GPRPEVSIDTD--LSVRADRERL 580 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc------ccCCccccHHHHHHHHHHHhhhh----cCCceEEeCCC--ceEEECHHHH
Confidence 788899999999999888754322 45566899999999988876532 23344444443 3477899999
Q ss_pred HHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC-hhhhhccccccC
Q 006706 461 MQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-IPLLFTKFAQSR 538 (634)
Q Consensus 461 ~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~-~~~if~~f~~~~ 538 (634)
.+++.||++||+||+++ +.+.+.+...++ .+.|+|+|||+||+++. .+++|+||++++
T Consensus 581 ~~vl~nLl~NAik~~~~~~~I~I~~~~~~~--------------------~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~ 640 (679)
T TIGR02916 581 ERVLGHLVQNALEATPGEGRVAIRVERECG--------------------AARIEIEDSGCGMSPAFIRERLFKPFDTTK 640 (679)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEcCC--------------------EEEEEEEEcCCCcChHHHHHhcCCCCCCCC
Confidence 99999999999999975 567776655432 38999999999999999 999999999876
Q ss_pred CCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 539 GSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 539 ~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
. .|+|+||++||++++.|||+|+++|. +|+||+|++++|
T Consensus 641 ~-----~G~GLGL~i~~~iv~~~gG~i~v~s~-~g~Gt~f~i~LP 679 (679)
T TIGR02916 641 G-----AGMGIGVYECRQYVEEIGGRIEVEST-PGQGTIFTLVLP 679 (679)
T ss_pred C-----CCcchhHHHHHHHHHHcCCEEEEEec-CCCceEEEEEeC
Confidence 4 48899999999999999999999998 899999999997
No 9
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-37 Score=293.25 Aligned_cols=227 Identities=24% Similarity=0.454 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeee
Q 006706 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPE--QRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (634)
Q Consensus 341 ~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~--~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~ 418 (634)
.+++..|.+++|||+||||+++.++++.|.+....+. ..+++..-.+..+||.+++++|+.++|++.....++.+.+|
T Consensus 222 e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~in 301 (459)
T COG5002 222 ERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWIN 301 (459)
T ss_pred HHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHH
Confidence 3457789999999999999999999999998755443 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCC
Q 006706 419 LQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRP 497 (634)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~ 497 (634)
+..++..++..+....++..+.--+..-+..+.++..|+..+.||+.|+++||+||+|+ |++++.+.....
T Consensus 302 ft~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~-------- 373 (459)
T COG5002 302 FTAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET-------- 373 (459)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc--------
Confidence 99999999999988755544431222235567789999999999999999999999997 456666655332
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCC-CCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006706 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~-~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
++.++|+|.|.|||.++++++|++||+.+...++. +|+||||+|+|++|+.|||+||.+|. .|+||
T Consensus 374 ------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~-~gkgt 440 (459)
T COG5002 374 ------------WVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESE-EGKGT 440 (459)
T ss_pred ------------EEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecc-cCCce
Confidence 49999999999999999999999999987765444 59999999999999999999999999 99999
Q ss_pred EEEEEEEecCCC
Q 006706 577 TVTFLVKLGICN 588 (634)
Q Consensus 577 ~f~i~lP~~~~~ 588 (634)
+|+|+||.....
T Consensus 441 t~~ftLPy~~~~ 452 (459)
T COG5002 441 TFSFTLPYSGEA 452 (459)
T ss_pred EEEEEecccCcc
Confidence 999999986544
No 10
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=2.1e-35 Score=347.17 Aligned_cols=241 Identities=30% Similarity=0.466 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 402 (634)
+.++..++.+++++.+++++.+.+|++.++||+||||++|.++++++.....+++++++++.+..+++++..++++++++
T Consensus 377 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~ 456 (921)
T PRK15347 377 VAERTQALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDF 456 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777788889999999999999999999999999988888899999999999999999999999999
Q ss_pred HhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEE
Q 006706 403 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSI 482 (634)
Q Consensus 403 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v 482 (634)
++++.+...+..+++++.++++++...+...+..+++.+.+..+++.+..+.+|+.++.||+.||++||+||++.|.+.+
T Consensus 457 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i 536 (921)
T PRK15347 457 SRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRL 536 (921)
T ss_pred HHHhcCCccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999888888877889999999999999999999999998888
Q ss_pred EEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhC
Q 006706 483 IASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMG 562 (634)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~g 562 (634)
.+....+ ++.|+|+|||+||+++.++++|+||++.+.. ..|+||||++|+++++.||
T Consensus 537 ~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~~~~~~g 593 (921)
T PRK15347 537 RVKRHEQ--------------------QLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIASSLAKMMG 593 (921)
T ss_pred EEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHHHHHHHHcC
Confidence 7765433 4999999999999999999999999987643 3589999999999999999
Q ss_pred CEEEEEecCCCCceEEEEEEEecCC
Q 006706 563 GHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 563 G~i~v~s~~~g~Gt~f~i~lP~~~~ 587 (634)
|+|+++|. +|+||+|+|.||+...
T Consensus 594 G~i~i~s~-~~~Gt~f~i~lp~~~~ 617 (921)
T PRK15347 594 GELTLFST-PGVGSCFSLVLPLNEY 617 (921)
T ss_pred CEEEEEec-CCCceEEEEEEECCCC
Confidence 99999999 9999999999998653
No 11
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=2.1e-35 Score=346.34 Aligned_cols=277 Identities=29% Similarity=0.487 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 320 RNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDV 399 (634)
Q Consensus 320 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~l 399 (634)
..++.+...++.+++.+.++..+.+..|++.++||+||||++|.++++++.+...+++.+++++.+.++++++..+++++
T Consensus 420 ~~el~~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~l 499 (914)
T PRK11466 420 TAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDI 499 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777778888999999999999999999999999999988778888999999999999999999999
Q ss_pred HHHHhhhCCC--ccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC
Q 006706 400 LDLSRLEDGS--LELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE 477 (634)
Q Consensus 400 l~~~~~~~~~--~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~ 477 (634)
+++++.+.+. ..+..+++++.+++++++..+...+..+++.+.++++++.|..+.+|+..+.||+.||++||+||++.
T Consensus 500 l~~s~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~ 579 (914)
T PRK11466 500 LDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDE 579 (914)
T ss_pred HHHHHHhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCC
Confidence 9999988763 45667899999999999999999999999999999888878778899999999999999999999999
Q ss_pred CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHH
Q 006706 478 GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRF 557 (634)
Q Consensus 478 g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~i 557 (634)
|.+.+.+...+. .+.|.|+|||+||+++..+++|+||++.+.. .+|+|+||++|+++
T Consensus 580 g~I~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~~~l 636 (914)
T PRK11466 580 GSIVLRSRTDGE--------------------QWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTISSRL 636 (914)
T ss_pred CeEEEEEEEcCC--------------------EEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHHHHHH
Confidence 988877765432 3899999999999999999999999986532 35899999999999
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006706 558 VNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 558 v~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
++.|||+|+++|. +|+||+|++.||+.....++.. .........+.+|||||||+.++.+++
T Consensus 637 ~~~~gG~i~v~s~-~~~Gt~f~i~lP~~~~~~~~~~---------~~~~~~~~~~~~vLivdD~~~~~~~l~ 698 (914)
T PRK11466 637 AQAMGGELSATST-PEVGSCFCLRLPLRVATAPVPK---------TVNQAVRLDGLRLLLIEDNPLTQRITA 698 (914)
T ss_pred HHHcCCEEEEEec-CCCCeEEEEEEEcccccccccc---------ccccccccCCcceEEEeCCHHHHHHHH
Confidence 9999999999999 8999999999998654322111 011122346789999999999998754
No 12
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=8.4e-35 Score=342.10 Aligned_cols=283 Identities=36% Similarity=0.565 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
+++.++.++..++++.+++++.+.+|++.++||+||||++|.++++.+.....+++++++++.+.++++++..+++++++
T Consensus 271 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 350 (919)
T PRK11107 271 QMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILD 350 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777778888889999999999999999999999999988878888999999999999999999999999
Q ss_pred HHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEE
Q 006706 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 481 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~ 481 (634)
+++++.+...+...++++.++++++...+...+..+++.+.++++++.|..+.+|+.++.||+.||++||+||++.|.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~ 430 (919)
T PRK11107 351 FSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNID 430 (919)
T ss_pred HHHHhcCCcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEE
Confidence 99999999888999999999999999999999999999999999888877788999999999999999999999999887
Q ss_pred EEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHHHHH
Q 006706 482 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNL 560 (634)
Q Consensus 482 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~ 560 (634)
+.+....... +..++.|+|+|+|+||+++.++++|+||++.+...+ ..+|+||||++||++++.
T Consensus 431 i~v~~~~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~ 495 (919)
T PRK11107 431 ILVELRALSN---------------TKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNE 495 (919)
T ss_pred EEEEEEecCC---------------CeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHH
Confidence 7776543221 223589999999999999999999999998766533 345999999999999999
Q ss_pred hCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhhh
Q 006706 561 MGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 561 ~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~~ 630 (634)
|||+|+++|. +|+||+|+|.+|+...+.+.. .+.+...+.|.+||++||++.+|..++.
T Consensus 496 ~gG~i~v~s~-~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~ili~d~~~~~~~~l~~ 554 (919)
T PRK11107 496 MGGDISFHSQ-PNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRLLYVEPNSAAAQATLD 554 (919)
T ss_pred hCCEEEEEec-CCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeEEEEeCCHHHHHHHHH
Confidence 9999999999 899999999999865432211 1122334678999999999999987543
No 13
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=3.5e-34 Score=300.65 Aligned_cols=241 Identities=23% Similarity=0.386 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHH
Q 006706 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-------PEQRVMIETVLKSSNLLTTL 395 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~-------~~~~~~l~~i~~~~~~l~~l 395 (634)
+.+....++++++++++..+.+++|++.++||+||||++|.+.++++.....+ +..+++++.+.+.++++..+
T Consensus 130 l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 209 (380)
T PRK09303 130 LSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERL 209 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555666666677899999999999999999999999999854322 33677889999999999999
Q ss_pred HHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC
Q 006706 396 VDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT 475 (634)
Q Consensus 396 i~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~ 475 (634)
+++++++++.+.+...+..+++++.++++++...+...+..+++.+.++++.+.|. +.+|+..+.||+.||++||+||+
T Consensus 210 i~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~-v~~d~~~l~qvl~NLl~NAik~~ 288 (380)
T PRK09303 210 ITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPS-VYADQERIRQVLLNLLDNAIKYT 288 (380)
T ss_pred HHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCe-EEeCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999888888889999999999999999999999999999988777664 77899999999999999999999
Q ss_pred CCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHH
Q 006706 476 KEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAIC 554 (634)
Q Consensus 476 ~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~ 554 (634)
++| .+.+.+....+. ++.|+|.|||+||+++..+++|+|||+.+. .....|+||||++|
T Consensus 289 ~~~~~I~i~~~~~~~~-------------------~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~-~~~~~G~GLGL~i~ 348 (380)
T PRK09303 289 PEGGTITLSMLHRTTQ-------------------KVQVSICDTGPGIPEEEQERIFEDRVRLPR-DEGTEGYGIGLSVC 348 (380)
T ss_pred CCCceEEEEEEecCCC-------------------EEEEEEEEcCCCCCHHHHHHHccCceeCCC-CCCCCcccccHHHH
Confidence 874 455544333322 489999999999999999999999999876 33456999999999
Q ss_pred HHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006706 555 RRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 555 k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
+++++.|||+|+++|. +++|++|+|++|+.
T Consensus 349 ~~iv~~~gG~i~v~s~-~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 349 RRIVRVHYGQIWVDSE-PGQGSCFHFTLPVY 378 (380)
T ss_pred HHHHHHcCCEEEEEec-CCCccEEEEEEecC
Confidence 9999999999999999 89999999999974
No 14
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=7e-33 Score=333.39 Aligned_cols=276 Identities=24% Similarity=0.378 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 006706 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS 409 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~-~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~ 409 (634)
+++++++.++++.+++|++.++||+||||++|.++++++.....++ +..+.++.+..+++++..++++++++++++.+.
T Consensus 699 ~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~ 778 (1197)
T PRK09959 699 EVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGN 778 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3344445555667889999999999999999999999987654444 445788899999999999999999999999988
Q ss_pred ccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecC
Q 006706 410 LELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKP 489 (634)
Q Consensus 410 ~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~ 489 (634)
..+..+++++.++++++...+...+..+++.+.+..+.+.+..+.+|+..+.||+.||++||+||++.|.+.+.+.....
T Consensus 779 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~ 858 (1197)
T PRK09959 779 YQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHI 858 (1197)
T ss_pred ceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeee
Confidence 88888999999999999999999998999998876654444457889999999999999999999998877766543321
Q ss_pred CCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEe
Q 006706 490 ESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDS 569 (634)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s 569 (634)
. .+...+.|+|+|+|+||+++.++++|+||++++... ..+|+||||++||++++.|||+|+++|
T Consensus 859 ~---------------~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i~~~iv~~~gG~i~v~s 922 (1197)
T PRK09959 859 D---------------DNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMICKELIKNMQGDLSLES 922 (1197)
T ss_pred c---------------CCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHHHHHHHHHcCCEEEEEe
Confidence 1 112248899999999999999999999999876542 345999999999999999999999999
Q ss_pred cCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006706 570 EGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 570 ~~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
. +|+||+|++.||+........... ... .+.......+||||||++.+|..++
T Consensus 923 ~-~~~Gt~f~i~lP~~~~~~~~~~~~----~~~--~~~~~~~~~~iLivdd~~~~~~~l~ 975 (1197)
T PRK09959 923 H-PGIGTTFTITIPVEISQQVATVEA----KAE--QPITLPEKLSILIADDHPTNRLLLK 975 (1197)
T ss_pred C-CCCcEEEEEEEEccccchhccccc----ccc--cccccccCceEEEcCCCHHHHHHHH
Confidence 9 899999999999865432211110 000 1111224579999999999998754
No 15
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-32 Score=275.98 Aligned_cols=390 Identities=23% Similarity=0.332 Sum_probs=266.1
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccccccccccc-CChhHHHHhccC
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPI-NLPIVTDVFNSA 221 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 221 (634)
..+...+.+.++...|..+.|-.--..+..+++++.+++|+-+. .... +...+. .-..+-+++.+.
T Consensus 327 ~~~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~~----~~~v---------G~tP~~~~v~~Ll~wl~~~ 393 (750)
T COG4251 327 TEHHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGGR----WHLV---------GETPPRPAVQRLLQWLAER 393 (750)
T ss_pred HHHHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECCE----EEEe---------cCCCChHHHHHHHHHHhcC
Confidence 33445566667777788877777778888999999999987542 1111 111111 112233344333
Q ss_pred CeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCcc----------ccCCCcccccccEE---EEEEecC------
Q 006706 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQ----------INDWPELPAKSYAV---MVLMLPT------ 282 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~----------~~~~~~l~~~~~~~---~vl~~~~------ 282 (634)
..-.+-..++....-+.+..|.+-..-.+..|+......+ ...|-.-+...|.. ++...+.
T Consensus 394 ~~~~vf~TdsL~q~yPda~~~~~vAsGlLAI~is~~~s~~llWFRpEvv~tV~WGG~P~k~~e~~~~~~rL~PRkSFe~W 473 (750)
T COG4251 394 EEGDVFATDSLSQVYPDAEDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGPMGIRLTPRKSFELW 473 (750)
T ss_pred CcccEEeeccccccCcchhhhccccceeEEEEeeccccceEEEEchHHheeeccCCCCCCccccCCCCcccCCcccHHHH
Confidence 3322222222222222233333333333444443211100 01111101111111 1222221
Q ss_pred -----CCCCccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006706 283 -----DGGRKWRDHELELIDVVADQ-VAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMR 356 (634)
Q Consensus 283 -----~~~~~~~~~e~~ll~~~a~~-~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr 356 (634)
.....|++.|++....+-.- +.+.+ ++.+++.+.++++++.|...++|...++||++
T Consensus 474 kE~vRl~s~PWs~~ei~~A~~LR~aiv~ivl-----------------~~aeela~l~r~lersn~el~~f~yv~sHdlq 536 (750)
T COG4251 474 KETVRLQSQPWSEVEIEAALELRKAIVGIVL-----------------RHAEELAQLRRELERSNAELRAFAYVASHDLQ 536 (750)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhh
Confidence 11347888877655544332 22222 22334444556667777778899999999999
Q ss_pred hHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHh
Q 006706 357 TLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPV 433 (634)
Q Consensus 357 ~PL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~ 433 (634)
+||+.|.+++++|.++ ..+++.++++..+.+.+.++.+++++++.++++.....++ ++.|+..++.+++..+...
T Consensus 537 ePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l--~~td~~~vv~~vl~~l~~r 614 (750)
T COG4251 537 EPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPL--QPTDVQKVVDKVLLELSQR 614 (750)
T ss_pred HHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC--CCcchHHHHHHHHHhcccc
Confidence 9999999999999864 6788899999999999999999999999999987665544 4889999999999999988
Q ss_pred hhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEE
Q 006706 434 ASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRV 513 (634)
Q Consensus 434 ~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 513 (634)
....++.+.+. + +|. +.+|+.++.|+++||+.||+||..++...+.+.....+. .+.+
T Consensus 615 i~dtgaei~i~--~-lp~-v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed------------------~~t~ 672 (750)
T COG4251 615 IADTGAEIRIA--P-LPV-VAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQED------------------EWTF 672 (750)
T ss_pred cccccceEEec--c-cce-eecCHHHHHHHHHHHHhhheecCCCCCCceEEeeeccCC------------------ceEE
Confidence 88888877763 3 665 778999999999999999999998765555555433322 2899
Q ss_pred EEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006706 514 QVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 514 ~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~ 588 (634)
.|.|||.||++...++||..|.+..... +..|+|+||+|||+|++.|+|+|+++|. +|.|+||.+++|.....
T Consensus 673 sV~dng~Gi~~a~~~riF~iFqRl~s~~-~y~gtG~GL~I~kkI~e~H~G~i~vEs~-~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 673 SVRDNGIGIDPAYFERIFVIFQRLHSRD-EYLGTGLGLAICKKIAERHQGRIWVEST-PGEGSTFYFTLPVGGEE 745 (750)
T ss_pred EecCCCCCcCHHHHHHHHHHHHhcCchh-hhcCCCccHHHHHHHHHHhCceEEEeec-CCCceeEEEEeecCCcC
Confidence 9999999999999999999998877654 4458999999999999999999999999 99999999999986543
No 16
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=8.2e-30 Score=273.17 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
+.+|++.++||+||||++|.++++++.+.. .++...++++.+.++++++..++++++++++.+.+......+.+++..+
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~ 283 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMM 283 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHH
Confidence 457999999999999999999999988654 3455678899999999999999999999999887766556678899999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCC
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i~v~~~~~~~~~~~~~~~~~~~ 501 (634)
++.+...+.... .+++.+.+..+++. .+.+|+..+.|++.||++||+||++++. +.+.+....+
T Consensus 284 ~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~------------ 348 (430)
T PRK11006 284 LRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ------------ 348 (430)
T ss_pred HHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC------------
Confidence 888877776655 67778888775554 3678999999999999999999998653 4454433322
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006706 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.+.|+|+|||+||+++..+++|+|||+.+...+ ..+|+|+||++||++++.|||+|+++|. +|+||+|++
T Consensus 349 --------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~-~~~Gt~f~i 419 (430)
T PRK11006 349 --------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESE-VGKGTRFSF 419 (430)
T ss_pred --------EEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEec-CCCceEEEE
Confidence 389999999999999999999999998766533 3359999999999999999999999998 899999999
Q ss_pred EEEecC
Q 006706 581 LVKLGI 586 (634)
Q Consensus 581 ~lP~~~ 586 (634)
.+|...
T Consensus 420 ~lP~~~ 425 (430)
T PRK11006 420 VLPERL 425 (430)
T ss_pred EechHh
Confidence 999653
No 17
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=7.2e-30 Score=261.50 Aligned_cols=213 Identities=23% Similarity=0.389 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSL---LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~---l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
..+++.++++||+++||++|.++++. +.+....++....+..|..-++||..+..+|..|++..... .+++.+
T Consensus 383 ~LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l 458 (603)
T COG4191 383 ALGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSL 458 (603)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccH
Confidence 56899999999999999999988764 45667788889999999999999999999999999865443 558999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCC
Q 006706 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWR 496 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~ 496 (634)
.+.++++...+....+..+..+....++ .+.+|.+++.+|+||+-|||.||++... +..+.+.....++.
T Consensus 459 ~~ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~------ 531 (603)
T COG4191 459 REAIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQ------ 531 (603)
T ss_pred HHHHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCe------
Confidence 9999999999999988888888876644 3567999999999999999999999874 35566666555443
Q ss_pred CCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006706 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 497 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
+.|+|+|||+||+++...++|+|||++|+.. +|.||||+|+++|++.+||+|++.+. ++.|+
T Consensus 532 --------------v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~---~GLGLGLaIS~~i~~d~GGsL~v~n~-~~~Ga 593 (603)
T COG4191 532 --------------VVLTVRDNGPGIAPEALPHLFEPFFTTKPVG---KGLGLGLAISQNIARDLGGSLEVANH-PEGGA 593 (603)
T ss_pred --------------EEEEEccCCCCCCHHHHHhhcCCccccCccc---CCcchhHHHHHHHHHHhCCeEEeecC-CCCce
Confidence 9999999999999999999999999999764 69999999999999999999999997 89999
Q ss_pred EEEEEEEe
Q 006706 577 TVTFLVKL 584 (634)
Q Consensus 577 ~f~i~lP~ 584 (634)
.|+++||.
T Consensus 594 ~F~i~L~~ 601 (603)
T COG4191 594 SFTIELRR 601 (603)
T ss_pred EEEEEeec
Confidence 99999984
No 18
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=1.7e-29 Score=270.39 Aligned_cols=231 Identities=21% Similarity=0.287 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006706 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (634)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 405 (634)
....+.++.+++++..+.+++|++.++||+||||+.|.+.++++.... +++. +.+.+..+++..++++++.++++
T Consensus 194 L~~~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~-~~~~----~~i~~~~~~l~~li~~ll~~~rl 268 (433)
T PRK10604 194 LGVAFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS-AAES----QALNRDIGQLEALIEELLTYARL 268 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC-cHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555666677777778899999999999999999999888886322 2222 23778899999999999999999
Q ss_pred hCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEE
Q 006706 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIAS 485 (634)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~ 485 (634)
+.+......+.+++.+++++++..++.....+++.+.+ +.. +..+.+|+..+.+++.||++||+||++ +.+.+.+.
T Consensus 269 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~ 344 (433)
T PRK10604 269 DRPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDT--PHQ-GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLL 344 (433)
T ss_pred cCCCcccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEe--cCC-CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEE
Confidence 98888888889999999999999888776666666554 333 233567999999999999999999995 66777776
Q ss_pred eecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCC-CCCccccHHHHHHHHHHhCCE
Q 006706 486 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGH 564 (634)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~ 564 (634)
..++ .+.|+|+|||+||+++..+++|+||++.+..... .+|.|+||++||++++.|||+
T Consensus 345 ~~~~--------------------~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~ 404 (433)
T PRK10604 345 LDGN--------------------QACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGS 404 (433)
T ss_pred EECC--------------------EEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCCE
Confidence 5543 3899999999999999999999999997665433 358999999999999999999
Q ss_pred EEEEecCCCCceEEEEEEEecC
Q 006706 565 IWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 565 i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
+++++. +++||+|++.+|...
T Consensus 405 i~v~s~-~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 405 VNCDES-ELGGARFSFSWPVWH 425 (433)
T ss_pred EEEEec-CCCeeEEEEEEeCCC
Confidence 999998 899999999999864
No 19
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=2.3e-27 Score=256.48 Aligned_cols=214 Identities=25% Similarity=0.423 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHH
Q 006706 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (634)
Q Consensus 342 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~ 420 (634)
...+++.+.++||+||||++|.++++++.+.. ..++.++.++.+.+..+++..++++++++++.. .....++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 34667999999999999999999999987643 345667788899999999999999999998743 3455689999
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCC
Q 006706 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~~ 499 (634)
++++++...+...+..+++.+.++.+...+. +.+|+..+.+++.||++||+||+.+ +.+.+.+...++
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~---------- 379 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLPE-IQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGA---------- 379 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCce-EEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCC----------
Confidence 9999999999999999999999987765553 5679999999999999999999765 556666654433
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006706 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+.|+|+|||+||+++..+++|++|++++. .|+|+||++||++++.|||+++++|. +++||+|+
T Consensus 380 ----------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-----~g~GlGL~iv~~~v~~~gG~i~i~s~-~~~Gt~f~ 443 (457)
T PRK10364 380 ----------GVKISVTDSGKGIAADQLEAIFTPYFTTKA-----EGTGLGLAVVHNIVEQHGGTIQVASQ-EGKGATFT 443 (457)
T ss_pred ----------eEEEEEEECCCCCCHHHHHHHhCccccCCC-----CCCcccHHHHHHHHHHCCCEEEEEeC-CCCcEEEE
Confidence 399999999999999999999999997653 47899999999999999999999998 89999999
Q ss_pred EEEEecC
Q 006706 580 FLVKLGI 586 (634)
Q Consensus 580 i~lP~~~ 586 (634)
+.||...
T Consensus 444 i~lP~~~ 450 (457)
T PRK10364 444 LWLPVNI 450 (457)
T ss_pred EEecCCC
Confidence 9999853
No 20
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=2.4e-29 Score=274.99 Aligned_cols=218 Identities=22% Similarity=0.261 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHH
Q 006706 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (634)
Q Consensus 342 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ 421 (634)
+...+++..++|++||||+.|.++++++.....+.......+.+.+....+...+..+.++... .......++|+..
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~dl~~ 350 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIPQ---SPQEIVVPVNLNQ 350 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhcc---CcccccccccHHH
Confidence 3355677888899999999999999998865333323334444444455555555555444321 2234456899999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc---EEEEEEeecCCCCCCCCCC
Q 006706 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY---VSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~---i~v~~~~~~~~~~~~~~~~ 498 (634)
++++++..+...+..+++.+.+..+...+. +.+|+.++.||+.||++||+||++.+. ..+.+.....++
T Consensus 351 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~------- 422 (494)
T TIGR02938 351 ILRDVITLSTPRLLAAGIVVDWQPAATLPA-ILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGD------- 422 (494)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEecCCCCCe-eecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCC-------
Confidence 999999999888888999999988766664 678999999999999999999986652 223333222221
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEE
Q 006706 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|+|+|||+|||++.+.++|+||++++... .+|+||||++||.+++.|||+|+++|. +|+||+|
T Consensus 423 -----------~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~--~~G~GlGL~i~~~iv~~~gG~i~~~s~-~~~G~~f 488 (494)
T TIGR02938 423 -----------LIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--RKHIGMGLSVAQEIVADHGGIIDLDDD-YSEGCRI 488 (494)
T ss_pred -----------EEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC--CCCCcccHHHHHHHHHHcCCEEEEEEC-CCCCEEE
Confidence 48999999999999999999999999988653 469999999999999999999999999 9999999
Q ss_pred EEEEEe
Q 006706 579 TFLVKL 584 (634)
Q Consensus 579 ~i~lP~ 584 (634)
+|+||+
T Consensus 489 ~i~lp~ 494 (494)
T TIGR02938 489 IVEFRV 494 (494)
T ss_pred EEEecC
Confidence 999995
No 21
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.97 E-value=3.8e-29 Score=234.85 Aligned_cols=221 Identities=25% Similarity=0.338 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
+...+.++++||+||||.+|.|.+++|.....++..+++.+.|.+.++|+..+++.+.-++.- .+....++|++.+
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~~----rp~~r~~~NIH~V 206 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGPQ----RPGDRVPVNIHEV 206 (363)
T ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcccccchHHHH
Confidence 456789999999999999999999999988777778899999999999999999998666542 2445568999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC---C--CcEEEEEEeecCCCCCCCCC
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK---E--GYVSIIASVAKPESLSDWRP 497 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~---~--g~i~v~~~~~~~~~~~~~~~ 497 (634)
++.+....+..+ ..++.+.-+.++++|. +.+|+++|.|++.||+.||+.... . |.++++.+....-
T Consensus 207 LerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------- 277 (363)
T COG3852 207 LERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------- 277 (363)
T ss_pred HHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE-------
Confidence 999999887655 5788999899999998 678999999999999999999875 2 5555544221110
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceE
Q 006706 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGST 577 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~ 577 (634)
..........+.++|.|||+|+|++.++.+|.||.+++. +|+||||+++++++..|||.|+++|. || .|+
T Consensus 278 ---~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~-----~GsGLGLala~~li~qH~G~Ie~~S~-Pg-~T~ 347 (363)
T COG3852 278 ---TIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE-----GGTGLGLALAQNLIDQHGGKIEFDSW-PG-RTV 347 (363)
T ss_pred ---EccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC-----CCccccHHHHHHHHHhcCCEEEEecc-CC-ceE
Confidence 011111222367889999999999999999999998775 48999999999999999999999998 54 799
Q ss_pred EEEEEEecC
Q 006706 578 VTFLVKLGI 586 (634)
Q Consensus 578 f~i~lP~~~ 586 (634)
|++.+|+..
T Consensus 348 FrvllP~~~ 356 (363)
T COG3852 348 FRVLLPIRK 356 (363)
T ss_pred EEEEeeccc
Confidence 999999876
No 22
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=9e-29 Score=267.08 Aligned_cols=230 Identities=18% Similarity=0.268 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 006706 328 VALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLED 407 (634)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~ 407 (634)
..+.++.++.++..+..++|++.++||+||||++|.+.++.+...... ...+....+.+...++..+++++++.++...
T Consensus 250 ~~ln~~l~~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~ 328 (485)
T PRK10815 250 RNLNRLLKNERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASMRS 328 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444455555677899999999999999999999988765321 1223345677788899999999999998888
Q ss_pred CCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEee
Q 006706 408 GSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVA 487 (634)
Q Consensus 408 ~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~ 487 (634)
+...+..+.+++..+++++...+...+..+++.+.++.+++. .+.+|+..+.+++.||++||++|+.. .+.+.+...
T Consensus 329 ~~~~~~~~~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~ 405 (485)
T PRK10815 329 EHNLLSRELHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT 405 (485)
T ss_pred CCcccccceecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe
Confidence 777778889999999999999999988899999998876543 36689999999999999999999975 455555443
Q ss_pred cCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEE
Q 006706 488 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWL 567 (634)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v 567 (634)
++ .+.|+|+|+|+||+++.++++|+||++.+.. .+|+|+||++|+++++.|||+|++
T Consensus 406 ~~--------------------~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~---~~G~GLGL~Ivk~iv~~~gG~i~v 462 (485)
T PRK10815 406 DE--------------------HLHIVVEDDGPGIPESKRELIFDRGQRADTL---RPGQGLGLSVAREITEQYEGKISA 462 (485)
T ss_pred CC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCC---CCCcchhHHHHHHHHHHcCCEEEE
Confidence 32 3899999999999999999999999986543 248999999999999999999999
Q ss_pred EecCCCCceEEEEEEEec
Q 006706 568 DSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 568 ~s~~~g~Gt~f~i~lP~~ 585 (634)
+|. +++||+|++.||.+
T Consensus 463 ~s~-~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 463 GDS-PLGGARMEVIFGRQ 479 (485)
T ss_pred EEC-CCCEEEEEEEEcCC
Confidence 999 89999999999964
No 23
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.96 E-value=1.7e-27 Score=249.08 Aligned_cols=212 Identities=20% Similarity=0.249 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeH-HHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL-QIV 422 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l-~~l 422 (634)
.+.|.+.++||+||||+++.+.++.+..... + ....+.+..+++...+++++++++............+++ .++
T Consensus 137 ~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~ 211 (356)
T PRK10755 137 ERLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDV 211 (356)
T ss_pred HHHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHH
Confidence 4568999999999999999999988765422 2 234455667888999999999998766555555667888 888
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCC
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~ 501 (634)
+..+...+...+..+++.+.+...+ .+..+.+|+..+.+++.||++||+||++++ .+.+.+...++
T Consensus 212 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~------------ 278 (356)
T PRK10755 212 ILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDG------------ 278 (356)
T ss_pred HHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCC------------
Confidence 9988888888888888888774323 344578899999999999999999999754 46665543322
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCC-CceEEEE
Q 006706 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLD-KGSTVTF 580 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g-~Gt~f~i 580 (634)
.+.|+|+|||+||+++..+++|++|++.+. ..+|+|+||++|+++++.|||+++++|. ++ +||+|++
T Consensus 279 --------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GlGL~i~~~i~~~~gg~i~i~s~-~~~~Gt~~~i 346 (356)
T PRK10755 279 --------GAVLAVEDEGPGIDESKCGELSKAFVRMDS---RYGGIGLGLSIVSRITQLHHGQFFLQNR-QERSGTRAWV 346 (356)
T ss_pred --------EEEEEEEECCCCCCHHHHHHhCCCeEeCCC---CCCCcCHHHHHHHHHHHHCCCEEEEEEC-CCCCeEEEEE
Confidence 389999999999999999999999997643 2358999999999999999999999998 77 9999999
Q ss_pred EEEec
Q 006706 581 LVKLG 585 (634)
Q Consensus 581 ~lP~~ 585 (634)
.||..
T Consensus 347 ~~p~~ 351 (356)
T PRK10755 347 WLPKA 351 (356)
T ss_pred EecCC
Confidence 99964
No 24
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.96 E-value=2.6e-27 Score=257.16 Aligned_cols=241 Identities=26% Similarity=0.353 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
++.+....+.++..++++..+.+.++++.++||++|||+.+.+.++.+.+... +...+.+..+...++++..+++++..
T Consensus 218 E~~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~ 296 (466)
T PRK10549 218 ELGRLAQDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQ 296 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666667777777778899999999999999999999999876432 22345577888889999999999999
Q ss_pred HHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cE
Q 006706 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YV 480 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~i 480 (634)
+++.+.+...+..+.+++.+++++++..++.....+++.+.++.++.. .+.+|+..+.|++.||+.||++|++++ .+
T Consensus 297 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I 374 (466)
T PRK10549 297 LSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSL 374 (466)
T ss_pred HHhhcCCCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 999888888888899999999999999999888888899988775543 356799999999999999999999864 55
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHHHH
Q 006706 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVN 559 (634)
Q Consensus 481 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~ 559 (634)
.+.+...++ .+.|+|.|||+||+++.++++|+||++.+.... ...|+|+||++|+++++
T Consensus 375 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 375 HISAEQRDK--------------------TLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred EEEEEEcCC--------------------EEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHHHHHHHH
Confidence 565544332 389999999999999999999999999876543 23489999999999999
Q ss_pred HhCCEEEEEecCCCCceEEEEEEEecC
Q 006706 560 LMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 560 ~~gG~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
.|||++++++. +++||+|++.||+..
T Consensus 435 ~~~G~l~~~s~-~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 435 AHNGRIIAAHS-PFGGVSITVELPLER 460 (466)
T ss_pred HcCCEEEEEEC-CCCeEEEEEEccCCC
Confidence 99999999998 899999999999754
No 25
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.96 E-value=3.3e-27 Score=264.87 Aligned_cols=238 Identities=18% Similarity=0.269 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
++.+..+.++++..++++..+....+++.++||+|||++.|.+.++.+......++..++++.+.+.++++..+++++.+
T Consensus 463 EIg~La~afn~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~ 542 (703)
T TIGR03785 463 EIGDLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSE 542 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666777777788899999999999999999999999987777778888999999999999999999999
Q ss_pred HHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-E
Q 006706 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-V 480 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i 480 (634)
+++++........+.+++.+++++++..++.....+++.+.+. .+ +..+.+|+..+.+++.||++||+||++++. +
T Consensus 543 ~arle~~~~~~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~--~~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I 619 (703)
T TIGR03785 543 ATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIP--ET-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLI 619 (703)
T ss_pred HHhhhcccccccceeecHHHHHHHHHHHHHHHhhcCCEEEEec--CC-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeE
Confidence 9998877667777899999999999999988877776666553 33 235778999999999999999999997644 4
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCC-CCccccHHHHHHHHH
Q 006706 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQT-PRAGLGLAICRRFVN 559 (634)
Q Consensus 481 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~-~g~GlGL~i~k~iv~ 559 (634)
.+.+...++ .+.|+|+|+|+||+++..+++|+||++.+...... +|+||||++||++++
T Consensus 620 ~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 620 EVGLSQNKS--------------------HALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred EEEEEEcCC--------------------EEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHHHHHHHH
Confidence 454443322 48999999999999999999999999877544333 489999999999999
Q ss_pred HhCCEEEEEecCCC-CceEEEEEEE
Q 006706 560 LMGGHIWLDSEGLD-KGSTVTFLVK 583 (634)
Q Consensus 560 ~~gG~i~v~s~~~g-~Gt~f~i~lP 583 (634)
.|||+|++++. ++ +|++|+++||
T Consensus 680 ~~gG~I~v~s~-~~g~Gt~f~I~LP 703 (703)
T TIGR03785 680 FHQGRIQAENR-QQNDGVVFRISLP 703 (703)
T ss_pred HcCCEEEEEEC-CCCCeEEEEEEeC
Confidence 99999999998 54 7999999997
No 26
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.95 E-value=1.7e-26 Score=250.18 Aligned_cols=237 Identities=25% Similarity=0.407 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDV 399 (634)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~l 399 (634)
.++.+....+..+.+++++..+...++...++||+||||+.+.+.++.+.... ..++..+.++.+....+++..+++++
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 297 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDM 297 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777778889999999999999999999988876543 34455677888888899999999999
Q ss_pred HHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-C
Q 006706 400 LDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-G 478 (634)
Q Consensus 400 l~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g 478 (634)
+.+++.+........+++++.++++++.+.+...+..+++.+.++. + ..+.+|+..+.+++.|+++||+||+++ +
T Consensus 298 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~ 373 (457)
T TIGR01386 298 LFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGG 373 (457)
T ss_pred HHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999998887788888999999999999999888888887766643 2 347789999999999999999999976 4
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHH
Q 006706 479 YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRF 557 (634)
Q Consensus 479 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~i 557 (634)
.+.+.+....+ .+.|+|.|+|+|||++..+++|++||+++...+ ...|+|+||++|+++
T Consensus 374 ~I~i~~~~~~~--------------------~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~ 433 (457)
T TIGR01386 374 TITVRIERRSD--------------------EVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSI 433 (457)
T ss_pred eEEEEEEecCC--------------------EEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHHHHHH
Confidence 56666654432 389999999999999999999999999876532 345899999999999
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 558 VNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 558 v~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
+++|||++++++ +++||+|++.||
T Consensus 434 ~~~~~G~~~~~~--~~~G~~~~~~~P 457 (457)
T TIGR01386 434 MEAHGGRASAES--PDGKTRFILRFP 457 (457)
T ss_pred HHHCCCEEEEEe--CCCceEEEEecC
Confidence 999999999998 488999999997
No 27
>PRK13557 histidine kinase; Provisional
Probab=99.95 E-value=3.4e-26 Score=253.25 Aligned_cols=265 Identities=18% Similarity=0.232 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceee
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 417 (634)
....++..++||++|||+.|.++++++.+. ...+...+.++.+.+.++++..++++++.+++.. ......+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 356788999999999999999999887642 2234566788999999999999999999998743 3445678
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCC
Q 006706 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWR 496 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i~v~~~~~~~~~~~~~~ 496 (634)
++..+++.+...+... ..+++.+.+...+..+. +..|+..+.+++.||+.||++|++.+. +.+..........
T Consensus 238 ~l~~~i~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~---- 311 (540)
T PRK13557 238 NLNGLVSGMGELAERT-LGDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE---- 311 (540)
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc----
Confidence 9999998887766543 34677777776665554 566999999999999999999987654 3333332211100
Q ss_pred CCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006706 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 497 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
.............+.|+|.|||+||+++..+++|+||++++.. ..|+|+||++||++++.|||+|+++|. +|+||
T Consensus 312 -~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~---~~g~GlGL~i~~~~v~~~gG~i~~~s~-~~~G~ 386 (540)
T PRK13557 312 -DLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE---GKGTGLGLSMVYGFAKQSGGAVRIYSE-VGEGT 386 (540)
T ss_pred -ccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC---CCCCCccHHHHHHHHHHCCCEEEEEec-CCCce
Confidence 0000000011235889999999999999999999999987643 358999999999999999999999999 89999
Q ss_pred EEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006706 577 TVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 577 ~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+|+++||.........+. ..........+++||||||++..+..++
T Consensus 387 ~f~i~lP~~~~~~~~~~~-------~~~~~~~~~~~~~iliv~~~~~~~~~l~ 432 (540)
T PRK13557 387 TVRLYFPASDQAENPEQE-------PKARAIDRGGTETILIVDDRPDVAELAR 432 (540)
T ss_pred EEEEEeeCCCCccCCCCC-------CCCcccccCCCceEEEEcCcHHHHHHHH
Confidence 999999985443221111 1111123356789999999998877643
No 28
>PRK09835 sensor kinase CusS; Provisional
Probab=99.95 E-value=3.7e-26 Score=249.21 Aligned_cols=238 Identities=20% Similarity=0.358 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVL 400 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll 400 (634)
++.+....+.++..++++..+.+.+|++.++||++||++.+.+..+.+.... ...+..+.+..+.+...++..++++++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll 319 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDML 319 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666777777889999999999999999999888776543 334456677778888899999999999
Q ss_pred HHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-
Q 006706 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY- 479 (634)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~- 479 (634)
++++.+.+...+...++++.++++++...+......+++.+.+.. + +..+.+|+..+.+++.|+++||++|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~ 396 (482)
T PRK09835 320 FLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVG--D-PCQVAGDPLMLRRAISNLLSNALRYTPAGEA 396 (482)
T ss_pred HHHHhcCCCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeC--C-CcEEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 999998877777788999999999999999988888888877652 2 334778999999999999999999997654
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHHH
Q 006706 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFV 558 (634)
Q Consensus 480 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv 558 (634)
+.+.+...++ .+.|+|.|+|.||+++.++++|+||++.+.... ...|+|+||++|++++
T Consensus 397 I~i~~~~~~~--------------------~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~ 456 (482)
T PRK09835 397 ITVRCQEVDH--------------------QVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIV 456 (482)
T ss_pred EEEEEEEeCC--------------------EEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHH
Confidence 6666554433 389999999999999999999999999865443 2358999999999999
Q ss_pred HHhCCEEEEEecCCCCceEEEEEEEe
Q 006706 559 NLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 559 ~~~gG~i~v~s~~~g~Gt~f~i~lP~ 584 (634)
+.|||+|+++|. ++||+|++.||.
T Consensus 457 ~~~~g~i~~~s~--~~g~~~~i~lP~ 480 (482)
T PRK09835 457 VAHKGTVAVTSD--ARGTRFVISLPR 480 (482)
T ss_pred HHCCCEEEEEEC--CCcEEEEEEeeC
Confidence 999999999997 469999999995
No 29
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=5.7e-26 Score=246.34 Aligned_cols=238 Identities=22% Similarity=0.319 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 321 NQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVL 400 (634)
Q Consensus 321 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll 400 (634)
+++.+....+.++.+++++..+.+.+|.+.++||++|||+.+.+..+++....... ..+..+....+++..++++++
T Consensus 220 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~ 296 (461)
T PRK09470 220 QEFRQAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLL 296 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677777777778889999999999999999999888876543222 246678889999999999999
Q ss_pred HHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcE
Q 006706 401 DLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV 480 (634)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i 480 (634)
.+++.+.. .....+.+++..+++++++.+......+++.+.++..++ +..+.+|+..+.+++.||++||++|++ +.+
T Consensus 297 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i 373 (461)
T PRK09470 297 VLSRNQQK-NHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKI 373 (461)
T ss_pred HHHHhhcc-cccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcE
Confidence 99997654 355677899999999999988877777888888874333 445778999999999999999999996 556
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCC-CCCccccHHHHHHHHH
Q 006706 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVN 559 (634)
Q Consensus 481 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~ 559 (634)
.+.+...++ .+.|+|+|+|+||+++.++++|+||++.+....+ ..|+|+||++|+++++
T Consensus 374 ~i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~ 433 (461)
T PRK09470 374 EVAFSVDKD--------------------GLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQ 433 (461)
T ss_pred EEEEEEECC--------------------EEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHHHHHHH
Confidence 666655433 3899999999999999999999999987654433 3489999999999999
Q ss_pred HhCCEEEEEecCCCCceEEEEEEEec
Q 006706 560 LMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 560 ~~gG~i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
.|||++.++|. +++||+|++.+|+.
T Consensus 434 ~~~G~l~~~s~-~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 434 QHRGWVKAEDS-PLGGLRLTIWLPLY 458 (461)
T ss_pred HCCCEEEEEEC-CCCeEEEEEEeeCC
Confidence 99999999998 89999999999975
No 30
>PRK10337 sensor protein QseC; Provisional
Probab=99.95 E-value=5.4e-26 Score=245.53 Aligned_cols=232 Identities=21% Similarity=0.301 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 323 LMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTP-EQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 323 l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~-~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
+.+....+.++..++++..+..++|++.++||+|||++.+.+..+.+......+ ....++..+...++++..++++++.
T Consensus 216 i~~l~~~~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~ 295 (449)
T PRK10337 216 VRPLVEALNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLT 295 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666667778999999999999999999888776544343 3456888999999999999999999
Q ss_pred HHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-E
Q 006706 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-V 480 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i 480 (634)
+++.+........+++++.+++++++..+...+..+++.+.++.+... ..+.+|+..+.+++.||++||+||++++. +
T Consensus 296 ~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i 374 (449)
T PRK10337 296 LSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAHP-VIRTGQPLLLSLLVRNLLDNAIRYSPQGSVV 374 (449)
T ss_pred HHhcCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC-ceeecCHHHHHHHHHHHHHHHHhhCCCCCeE
Confidence 999877655556778999999999999998888889999998875443 34578999999999999999999998753 4
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHH
Q 006706 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNL 560 (634)
Q Consensus 481 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~ 560 (634)
.+.+.. ..++|+|+|+||+++..+++|+||++.+.. ..+|+|+||++|++++++
T Consensus 375 ~i~~~~------------------------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~iv~~i~~~ 428 (449)
T PRK10337 375 DVTLNA------------------------RNFTVRDNGPGVTPEALARIGERFYRPPGQ--EATGSGLGLSIVRRIAKL 428 (449)
T ss_pred EEEEEe------------------------eEEEEEECCCCCCHHHHHHhcccccCCCCC--CCCccchHHHHHHHHHHH
Confidence 433321 368999999999999999999999986432 335899999999999999
Q ss_pred hCCEEEEEecCCCCceEEEEEE
Q 006706 561 MGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 561 ~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
|||++++++. +++|++|++.|
T Consensus 429 ~gg~l~~~s~-~~~G~~~~i~~ 449 (449)
T PRK10337 429 HGMNVSFGNA-PEGGFEAKVSW 449 (449)
T ss_pred cCCEEEEEec-CCCeEEEEEeC
Confidence 9999999998 89999999864
No 31
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.95 E-value=3.4e-26 Score=236.74 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQI 421 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ 421 (634)
+.+|.+.++||++|||+.|.++++.+... ..+++..++++.+.+.++++..+++++.++++.+.+......+++++.+
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~ 193 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPA 193 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHH
Confidence 44688999999999999999999988754 3456667889999999999999999999999988777777888999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCC
Q 006706 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~ 500 (634)
++..+...+......+++.+.+..+ . +..+.+|+..+.+++.||+.||++|++.+ .+.+.+...++
T Consensus 194 ~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~----------- 260 (333)
T TIGR02966 194 LLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG----------- 260 (333)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC-----------
Confidence 9999999999999889899998773 2 34577899999999999999999998754 44454443322
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006706 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+.|.|.|+|+||+++..+++|++|++.+.... ...|+|+||++|+.+++.|||+++++|. +++||+|+
T Consensus 261 ---------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~-~~~Gt~~~ 330 (333)
T TIGR02966 261 ---------GAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESE-LGKGSTFS 330 (333)
T ss_pred ---------EEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEec-CCCCeEEE
Confidence 389999999999999999999999997655432 3458999999999999999999999999 89999999
Q ss_pred EEE
Q 006706 580 FLV 582 (634)
Q Consensus 580 i~l 582 (634)
++|
T Consensus 331 i~l 333 (333)
T TIGR02966 331 FIF 333 (333)
T ss_pred EEC
Confidence 875
No 32
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.95 E-value=5.6e-26 Score=247.31 Aligned_cols=235 Identities=26% Similarity=0.385 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006706 326 QNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRL 405 (634)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~ 405 (634)
....++++..++++. +...++++.++||++||++.+.+.++.+.+....++..++++.+...++++..++++++.+++.
T Consensus 239 l~~~~~~m~~~l~~~-~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 317 (475)
T PRK11100 239 LAQALESMRVKLEGK-AYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARL 317 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444332 2356788999999999999999999998876556677889999999999999999999999998
Q ss_pred hCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEE
Q 006706 406 EDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIA 484 (634)
Q Consensus 406 ~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~ 484 (634)
+..........+++.++++++...+......+++.+.+..+ +..+.+|...+.+++.|++.||++|+.+ +.+.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~ 394 (475)
T PRK11100 318 EQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSA 394 (475)
T ss_pred ccCCCCccceeccHHHHHHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 87766667789999999999999999988889999888765 3446779999999999999999999965 5666666
Q ss_pred EeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCE
Q 006706 485 SVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGH 564 (634)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~ 564 (634)
...++ .+.++|+|+|.||+++.++++|++|++.+.......|+|+||++|+++++.|||+
T Consensus 395 ~~~~~--------------------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i~~~~~~~~~G~ 454 (475)
T PRK11100 395 EVDGE--------------------QVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGE 454 (475)
T ss_pred EEcCC--------------------EEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHHHHHHHHHCCCE
Confidence 54433 3899999999999999999999999987654434468999999999999999999
Q ss_pred EEEEecCCCCceEEEEEEEec
Q 006706 565 IWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 565 i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
++++|. +++||+|++.+|..
T Consensus 455 i~i~s~-~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 455 VTLRNR-PEGGVLATLTLPRH 474 (475)
T ss_pred EEEEEc-CCCeEEEEEEeeCC
Confidence 999998 88999999999964
No 33
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.95 E-value=6e-26 Score=244.18 Aligned_cols=228 Identities=20% Similarity=0.332 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 322 QLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 322 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
++.+..+.+.++.+++++..+.+..|++.++||+||||+.+.+.++++.++ .....+.+.+..+++..+++++++
T Consensus 207 Ei~~L~~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~ 281 (435)
T PRK09467 207 EVRSVTRAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFID 281 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777777788889999999999999999999888776432 223445678889999999999999
Q ss_pred HHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEE
Q 006706 402 LSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVS 481 (634)
Q Consensus 402 ~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~ 481 (634)
+.+.... ....++++.+++++++.... ..+..+.++++.. +..+.+|+..+.+++.||++||+||+ .+.+.
T Consensus 282 ~~r~~~~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~ 352 (435)
T PRK09467 282 YLRTGQE---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIK 352 (435)
T ss_pred HhcccCC---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEE
Confidence 9886533 34568899999998887654 3455666665544 33577899999999999999999998 46677
Q ss_pred EEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHh
Q 006706 482 IIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLM 561 (634)
Q Consensus 482 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~ 561 (634)
+.....++ .+.|+|.|+|+||+++..+++|+||++.+... ...|+|+||++|+++++.|
T Consensus 353 i~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~-~~~g~GlGL~iv~~i~~~~ 411 (435)
T PRK09467 353 VSSGTEGK--------------------RAWFQVEDDGPGIPPEQLKHLFQPFTRGDSAR-GSSGTGLGLAIVKRIVDQH 411 (435)
T ss_pred EEEEecCC--------------------EEEEEEEecCCCcCHHHHHHhcCCcccCCCCC-CCCCeehhHHHHHHHHHHC
Confidence 76654432 38999999999999999999999999866543 2358999999999999999
Q ss_pred CCEEEEEecCCCCceEEEEEEEec
Q 006706 562 GGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 562 gG~i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
||++++.+. +++|++|++.+|+.
T Consensus 412 ~g~l~i~~~-~~~G~~~~i~lp~~ 434 (435)
T PRK09467 412 NGKVELGNS-EEGGLSARAWLPLT 434 (435)
T ss_pred CCEEEEEEC-CCCcEEEEEEEeCC
Confidence 999999998 89999999999974
No 34
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-24 Score=222.32 Aligned_cols=211 Identities=21% Similarity=0.291 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceee
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLET---DL---TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 417 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~---~~---~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~ 417 (634)
-++.+..++||+||||+-|...++.+... .. .+..++..+.|.+.+..+.++++++..|+|+. +++.+..
T Consensus 486 W~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~ 561 (712)
T COG5000 486 WGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKS 561 (712)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCcc
Confidence 45677779999999999999998888742 22 23346789999999999999999999999986 5566799
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC------CcEEEEEEeecCCC
Q 006706 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE------GYVSIIASVAKPES 491 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~------g~i~v~~~~~~~~~ 491 (634)
||+++++++....+-. ...+.+..+...+ |.....|+..+.|++.|++.||.++..+ ..-.+.++....++
T Consensus 562 dL~~ll~e~~~L~e~~--~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g 638 (712)
T COG5000 562 DLRALLKEVSFLYEIG--NDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADG 638 (712)
T ss_pred hHHHHHHHHHHHHhcc--CCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCC
Confidence 9999999999988743 4577888887666 7778889999999999999999998532 11123333333221
Q ss_pred CCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecC
Q 006706 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEG 571 (634)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~ 571 (634)
.+.+.|.|||.|+|.+...++|+||.+++. +||||||+|+|+|+|.|||++++...+
T Consensus 639 ------------------~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~-----KGTGLGLAiVKkIvEeHGG~leL~da~ 695 (712)
T COG5000 639 ------------------RIVVDVIDNGKGFPRENRHRALEPYVTTRE-----KGTGLGLAIVKKIVEEHGGRLELHNAP 695 (712)
T ss_pred ------------------eEEEEEecCCCCCChHHhhhhccCceeccc-----ccccccHHHHHHHHHhcCCeEEecCCC
Confidence 499999999999999999999999998875 489999999999999999999999873
Q ss_pred CCCceEEEEEEEe
Q 006706 572 LDKGSTVTFLVKL 584 (634)
Q Consensus 572 ~g~Gt~f~i~lP~ 584 (634)
.-.|..+.+.||.
T Consensus 696 d~~GA~i~i~fp~ 708 (712)
T COG5000 696 DFDGAMIRIKFPL 708 (712)
T ss_pred CCCCcEEEEEccc
Confidence 3359999999996
No 35
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=6.9e-26 Score=236.24 Aligned_cols=217 Identities=22% Similarity=0.321 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
..++|++.++||+||||++|.++++++.+...+++.+++++.+.+.++++..++++++.+.+.. .....++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHHH
Confidence 3568999999999999999999999988766667788999999999999999999998765432 2346789999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-C-CCcEEEEEEeecCCCCCCCCCCCC
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-K-EGYVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~-~-~g~i~v~~~~~~~~~~~~~~~~~~ 500 (634)
++.+...+.... .+++.+.++.+++.+. +.+|+..+.+++.||++||++|+ . .+.+.+.........
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~~-i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 998888777554 4677788777666554 67799999999999999999997 3 344444432211100
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006706 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.........+.+.|.|||+||+++..+++|+||++++. .|+|+||++||++++.|||+|+++|. +| ||+|++
T Consensus 272 -~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-----~g~GlGL~i~~~iv~~~gG~i~~~s~-~~-~~~f~i 343 (348)
T PRK11073 272 -LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARNLIDQHSGKIEFTSW-PG-HTEFSV 343 (348)
T ss_pred -cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-----CCccCCHHHHHHHHHHcCCeEEEEec-CC-ceEEEE
Confidence 00000111368999999999999999999999998653 48899999999999999999999998 67 599999
Q ss_pred EEEe
Q 006706 581 LVKL 584 (634)
Q Consensus 581 ~lP~ 584 (634)
.||+
T Consensus 344 ~lP~ 347 (348)
T PRK11073 344 YLPI 347 (348)
T ss_pred EEec
Confidence 9996
No 36
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.94 E-value=4.8e-23 Score=228.48 Aligned_cols=358 Identities=14% Similarity=0.125 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccc
Q 006706 123 KNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ 202 (634)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 202 (634)
.++.++.+++...++++++.+..|+..++.+..+.+..+.+..+++++.+.++++.+.+.+.+.....-.........
T Consensus 199 ~~l~~~~~~~t~~l~~~~~~l~~ly~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 276 (569)
T PRK10600 199 AVLEQRVQEKTAGLEQKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYETDDEENHQEFTCQSD-- 276 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHhcCCCceEEEEeccccccceeeccCCCc--
Confidence 334445555566688888889999999999999999999999999999999999999987765433321111111100
Q ss_pred cccccccCChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecC
Q 006706 203 IGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT 282 (634)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~ 282 (634)
.......+..+... ..........+.+|+ ..+...+|++....
T Consensus 277 ----~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l--------------~~~~~~~G~~~~~~ 319 (569)
T PRK10600 277 ----MTCDDKGCQLCPRG-------------------VLPVGDRGTTLKWRL--------------SDKHGQYGILLATL 319 (569)
T ss_pred ----cCcccccccccccc-------------------CCCcCCCCceEEEEe--------------ecCCcceEEEEEEc
Confidence 00000000000000 000000112334443 23344567666555
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006706 283 DGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAI 362 (634)
Q Consensus 283 ~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I 362 (634)
..+..+++++..+++.++.+++.++...+...+ .+++ ...+.+..++..++|.+.++|+.+
T Consensus 320 ~~~~~l~~~~~~ll~~l~~~l~~~l~~~~~~~~-----------~~~~--------~~~~er~~iarelhd~i~~~L~~l 380 (569)
T PRK10600 320 PQGRHLSHDQQQLVDTLVEQLTATLALERQQER-----------QQQL--------IVMEERATIARELHDSIAQSLSCM 380 (569)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH--------HHHHHHHHHHHHhccHHHHHHHHH
Confidence 556689999999999999999887754432110 0000 111224456777778888888888
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCce
Q 006706 363 IALSSLLLE--TDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (634)
Q Consensus 363 ~~~~~~l~~--~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (634)
...+..+.. ...+++.++.++.+.+.++++...+++++...+. .....++.+.+++++..+.... ++.
T Consensus 381 ~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~~~---~~~ 450 (569)
T PRK10600 381 KMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSARF---GFP 450 (569)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHHHh---CCe
Confidence 777665543 3345677888999999999999999998876553 3346788888988888877543 344
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC
Q 006706 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (634)
Q Consensus 441 ~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 520 (634)
+.++.+.+.......++..+.+++.|+++||+||++.+.+.+.+...++ .+.++|+|||+
T Consensus 451 i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~~~--------------------~~~l~V~D~G~ 510 (569)
T PRK10600 451 VKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQNQN--------------------QVKLSVQDNGC 510 (569)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEcCC--------------------EEEEEEEECCC
Confidence 5554432222222224556999999999999999988877777654432 38999999999
Q ss_pred CCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006706 521 GVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 521 Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
||+++. ..++|+||++|+++++.|||++++++. +|+||+|+++||...
T Consensus 511 Gi~~~~-----------------~~~~glGL~i~~~~~~~lgG~l~i~s~-~~~Gt~v~i~lp~~~ 558 (569)
T PRK10600 511 GVPENA-----------------ERSNHYGLIIMRDRAQSLRGDCRVRRR-ESGGTEVVVTFIPEK 558 (569)
T ss_pred CCCccc-----------------cCCCCccHHHHHHHHHHcCCEEEEEEC-CCCCEEEEEEEecCC
Confidence 999863 125699999999999999999999999 899999999999853
No 37
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=1.1e-24 Score=244.55 Aligned_cols=213 Identities=27% Similarity=0.457 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
...++++.++||++|||+.|.++++++.....+++..+.++.+.+.++++..++++++++++.... ..+++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 356799999999999999999999998876667778899999999999999999999999876533 3568999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCC
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~~~~ 501 (634)
++++...+......+++.+.+..+++.+. +..|+..+.+++.|++.||++|+.. |.+.+.+....+.
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~----------- 532 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELPP-IWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDG----------- 532 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCCe-EEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC-----------
Confidence 99999999887777889988887766654 6679999999999999999999765 5555655443332
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 006706 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 581 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~ 581 (634)
.+.|+|+|||+||+++..+++|+||++++. .|+|+||++||++++.|||+++++|. +|+||+|+++
T Consensus 533 --------~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-----~g~glGL~~~~~~~~~~~G~i~~~s~-~~~Gt~~~i~ 598 (607)
T PRK11360 533 --------QVAVSIEDNGCGIDPELLKKIFDPFFTTKA-----KGTGLGLALSQRIINAHGGDIEVESE-PGVGTTFTLY 598 (607)
T ss_pred --------EEEEEEEeCCCCCCHHHHhhhcCCceeCCC-----CCCchhHHHHHHHHHHcCCEEEEEEc-CCCceEEEEE
Confidence 289999999999999999999999997653 37899999999999999999999999 8999999999
Q ss_pred EEec
Q 006706 582 VKLG 585 (634)
Q Consensus 582 lP~~ 585 (634)
+|+.
T Consensus 599 lp~~ 602 (607)
T PRK11360 599 LPIN 602 (607)
T ss_pred ecCC
Confidence 9984
No 38
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.93 E-value=1.9e-23 Score=225.59 Aligned_cols=248 Identities=16% Similarity=0.207 Sum_probs=178.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006706 288 WRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAE-KAIHARNDFRAVMNHEMRTLMHAIIALS 366 (634)
Q Consensus 288 ~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~isHelr~PL~~I~~~~ 366 (634)
|.....+++..++.++..++.......+.++.+++++++..+.++..+++. ..++.++++++.++||+++||++|.+..
T Consensus 245 ~~~~~~~l~~~l~~~~l~gi~lg~~i~r~r~l~~~L~~~l~~~~~l~~~L~~~~e~~r~~ia~elhdeI~~pLtaI~~~a 324 (495)
T PRK11644 245 WHDHPVDLLLSLLAQSLTGLLLGAGIQRQRELNQSLQKELARNRHLAERLLETEESVRRDVARELHDEIGQTITAIRTQA 324 (495)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 444455666666777665554444444444444444443333332222222 2234577899999999999999999999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEe
Q 006706 367 SLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIM 445 (634)
Q Consensus 367 ~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~ 445 (634)
+.+++.. .+++.++..+.+.+.+.++.+.++++++..+ +...+.+++.+.++++.+.+.... +++.++++.
T Consensus 325 ~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr------~~~l~~~~L~~~l~~l~~~l~~~~--~~~~v~l~~ 396 (495)
T PRK11644 325 GIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLR------PRQLDDLTLEQAIRSLMREMELED--RGIVSHLDW 396 (495)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccC------CcccccCCHHHHHHHHHHHHHHhh--cCceEEEEe
Confidence 8887543 3445567788888889999999998876544 223457899999999988876543 455555554
Q ss_pred CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCC
Q 006706 446 APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (634)
Q Consensus 446 ~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~ 525 (634)
+.+.......++..+.++++|+++||+||++++.+.+.....++ .+.++|+|||+||+++
T Consensus 397 ~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~~~--------------------~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 397 RIDESALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDE--------------------RLMLVIEDDGSGLPPG 456 (495)
T ss_pred cCCcccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--------------------EEEEEEEECCCCCCcC
Confidence 43333345557888999999999999999998887777665433 3899999999999876
Q ss_pred ChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006706 526 DIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 526 ~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~ 584 (634)
+ .|.|+||++||++++.|||+++++| ++||+|++++|.
T Consensus 457 ~------------------~~~GLGL~ivr~iv~~~GG~i~v~S---~~Gt~f~I~LP~ 494 (495)
T PRK11644 457 S------------------GQQGFGLRGMRERVTALGGTLTISC---THGTRLSVSLPQ 494 (495)
T ss_pred C------------------CCCCCcHHHHHHHHHHcCCEEEEEc---CCCEEEEEEEeC
Confidence 3 2569999999999999999999998 579999999995
No 39
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-27 Score=265.69 Aligned_cols=628 Identities=36% Similarity=0.431 Sum_probs=463.6
Q ss_pred CCccccCC--CCCchhhhHHHHHhhhHHHHHHHhhHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHhhhHHHhHHHhc-c
Q 006706 2 ESCDCIDT--QWPPDELLVRYQYISDILIALAYFSIPVELIYFVQKSAFFP-YRWVLMQFGSFIILCGLTHFISLWTF-T 77 (634)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~s~~~i~~a~~~ip~~~~~~~~~~~~~~-~~~~~~~~~~f~~~cg~~h~~~~~~~-~ 77 (634)
..|+|.+. .|+.......-.+.+|.+++.|||++|..++||..+...++ +.|....|..|+..|+.+|....|+. -
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 109 (786)
T KOG0519|consen 30 DLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEAGVLSEFIAFDNLCGATHLLNGWTSYT 109 (786)
T ss_pred hhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhcccccccccccceeccccchhhhhhhhhhcccchhhhcCC
Confidence 47899975 77766666678899999999999999999999999999875 99999999999999999999999994 3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHH---HHHHHHHHhhhhchHHHhHHHHHHHHHHh
Q 006706 78 VHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNR---ADELDREMGLILTQEETGRHVRMLTHEIR 154 (634)
Q Consensus 78 ~~~~~~~~~~~~~k~~~a~vs~~ta~~l~~~~p~~l~~~s~~~~~~~~---~~~l~~~~~~~~~~~~~~~~l~~l~~~i~ 154 (634)
...-..+...+..+..++.+++.++...+..+|..+..+.++...+.. ++++.++......+.......+..+..+.
T Consensus 110 ~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~s~~~~~~~~~~~~~~~ 189 (786)
T KOG0519|consen 110 SHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAELDYEVGLINTSLETLSIVRMLTHEIR 189 (786)
T ss_pred ccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchhhhhhhhhhhhhhheeeeeeeeeeehh
Confidence 333334444566788899999999999999999999999999999988 89999999999999999999999999999
Q ss_pred cccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccc----cccccccccCChhHHHHhccCCeEEcCCCC
Q 006706 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ----IQIGSSVPINLPIVTDVFNSAQAMRLPYNC 230 (634)
Q Consensus 155 ~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (634)
...+.+.+++.+..+..+.+..+.+..|.+.+.+......|.+..+ .......+..++....++++.........+
T Consensus 190 ~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s 269 (786)
T KOG0519|consen 190 AALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNGGMLGGLSDTDLDSDQRLILNTDRVSAKSLLS 269 (786)
T ss_pred hhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeecccccCcceEEeccccchHHHHHHHHHhhhccccch
Confidence 9999999999999999999999999999999887666666666654 222233334555555555555443333333
Q ss_pred chhhhh-hcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHH-
Q 006706 231 PLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALS- 308 (634)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~- 308 (634)
....+- ..............++++.+........+++.....+...+...+.+.++.|..++..+...+++++..++.
T Consensus 270 ~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~ 349 (786)
T KOG0519|consen 270 LLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKF 349 (786)
T ss_pred hHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecc
Confidence 222211 112234556667778888877777666788888999999999999988999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Q 006706 309 -HAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLL-ETDLTPEQRVMIETVL 386 (634)
Q Consensus 309 -~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~-~~~~~~~~~~~l~~i~ 386 (634)
++.-.+.....++++...+..+..++++...+...+..+...+.|..++|.+.+.+....+. .....++..-.++...
T Consensus 350 t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~ 429 (786)
T KOG0519|consen 350 THAGHLEESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVM 429 (786)
T ss_pred cccceEEEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhh
Confidence 77767677777777777777787787777777777888888888999999999998887444 3344444445566677
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHH
Q 006706 387 KSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILN 466 (634)
Q Consensus 387 ~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~n 466 (634)
+....+..+++.-.+.++...+........+.+..++........+....+...+.+.+..+.+..+.+|..+..|++.+
T Consensus 430 ~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (786)
T KOG0519|consen 430 RSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILD 509 (786)
T ss_pred hhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhh
Confidence 77777888888777777766665555667889999999999999988878888888888888888888888888999999
Q ss_pred HHHHHhh--cCCCCcE-EEEEEeecCCCCC----CCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCC
Q 006706 467 IVGNAVK--FTKEGYV-SIIASVAKPESLS----DWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (634)
Q Consensus 467 Ll~NAik--~~~~g~i-~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (634)
...++.. ++..++- ...+.....+... +...+.+.........++.+.+.++..+....+....+..+.+...
T Consensus 510 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 589 (786)
T KOG0519|consen 510 FNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD 589 (786)
T ss_pred hcchhhhhhccccCcceeEEEEecccCccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhcccc
Confidence 9999988 6666542 3333333211111 1112222222233334588899999999988888877777766554
Q ss_pred CCCC-CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCC---CCCCCcCcccCCCCCCCCCCCCCce
Q 006706 540 SSCQ-TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNP---GSPIHPVALKGRASHGSADLTGPKP 615 (634)
Q Consensus 540 ~~~~-~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v 615 (634)
...+ ..+.++++..|.+..+.++|.+++.....+..-.....+-....... .......+.....+.....++|++|
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~i 669 (786)
T KOG0519|consen 590 LTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKI 669 (786)
T ss_pred chhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCce
Confidence 4433 24678999999999999999998874311111000000000000000 0000001111111224555799999
Q ss_pred EEecCchhhhhhhh
Q 006706 616 LFRDNDQIASTKSR 629 (634)
Q Consensus 616 LvvDD~~~~r~v~~ 629 (634)
||||||+.||+|++
T Consensus 670 Llvddn~vn~~Va~ 683 (786)
T KOG0519|consen 670 LLVDDNPVNRKVAT 683 (786)
T ss_pred EEEecccchHHHHH
Confidence 99999999999943
No 40
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-23 Score=213.82 Aligned_cols=218 Identities=37% Similarity=0.583 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-ccccceeeeHHH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS-LELDNGPFNLQI 421 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~-~~l~~~~~~l~~ 421 (634)
....++..++||++||++.+.+..+.+... ........+..+....+++..++++++.+++.+... ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 467899999999999999999988855544 222266788888889999999999999999987652 333466778999
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCC
Q 006706 422 VLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFY 501 (634)
Q Consensus 422 ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~ 501 (634)
+++++...+......+++.+....+ .+..+.+|+..+.+++.||++||++|++.+.+.+.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~------------ 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDDE------------ 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecCC------------
Confidence 9999999999888778888876544 23447779999999999999999999985566666655433
Q ss_pred ccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 006706 502 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 581 (634)
Q Consensus 502 ~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~ 581 (634)
++.++|.|+|+||+++..+++|+||++++...+ |+|+||++|+++++.|||++.+++. ++.||+|+++
T Consensus 259 --------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~---g~GlGL~i~~~~~~~~~g~i~~~~~-~~~Gt~~~i~ 326 (336)
T COG0642 259 --------QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS---GTGLGLAIVKRIVELHGGTISVESE-PGKGTTFTIR 326 (336)
T ss_pred --------eEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC---CCCccHHHHHHHHHHcCCEEEEEec-CCCceEEEEE
Confidence 399999999999999999999999999987653 8999999999999999999999998 8899999999
Q ss_pred EEecCC
Q 006706 582 VKLGIC 587 (634)
Q Consensus 582 lP~~~~ 587 (634)
+|....
T Consensus 327 lP~~~~ 332 (336)
T COG0642 327 LPLAPA 332 (336)
T ss_pred Eecccc
Confidence 998654
No 41
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-21 Score=195.22 Aligned_cols=341 Identities=15% Similarity=0.185 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccc
Q 006706 122 LKNRADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI 201 (634)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~ 201 (634)
.+.++++.+++.+.++++++.+..||..++.+.++...++.++.+++.+....++..+.+.+.++++...+..++-+...
T Consensus 224 Y~~LE~rV~eKT~~L~~~Nq~Ls~LYqssr~L~ts~~~~~~l~~vLn~l~~~~~~~~~~l~l~~~~~e~~h~~~~~~~di 303 (574)
T COG3850 224 YADLEQRVEEKTRDLEQKNQRLSFLYQSSRRLHTSQIDDERLRHVLNRLQNLTGLAAVRLELYGGDDERNHQEHAEQWDI 303 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhhcccceEEEEecCcchhhhhhhccCcce
Confidence 46677788888889999999999999999999999999999999999999999999999988876655444333222111
Q ss_pred ccccccccCChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEec
Q 006706 202 QIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (634)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~ 281 (634)
..+ + . ...+..|. .+| +...+..++.+..
T Consensus 304 ~~~------d------------------~----------------~~~~~~~~---------~~~-l~~~g~~Lg~l~~- 332 (574)
T COG3850 304 SEG------D------------------Q----------------PSGLKWPQ---------EDP-LTQQGHLLGTLPW- 332 (574)
T ss_pred ecC------C------------------C----------------Ccccchhh---------hcc-hhhhhhhheeeec-
Confidence 000 0 0 00000000 011 1111122333322
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006706 282 TDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHA 361 (634)
Q Consensus 282 ~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~ 361 (634)
.+.....+..+++.++.+++.++...+.-++ ++.-...++++..++.+++.+-+-|+.
T Consensus 333 ---~~~l~~~d~~Ll~tl~~~L~rtL~~~~~q~~-------------------~qQLllmEERatIAReLHDSiAQsLS~ 390 (574)
T COG3850 333 ---QRSLPEDDQQLLDTLVQQLGRTLALNKQQEQ-------------------QQQLLLMEERATIARELHDSIAQSLSF 390 (574)
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999998855432211 111223445677888888888888888
Q ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCC
Q 006706 362 IIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKK 438 (634)
Q Consensus 362 I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~ 438 (634)
+.-.+++|+.. ...++.++.+..+++..+....-+++++.--| +..+.-++..-++++++.+.. ..+
T Consensus 391 LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFR-------ltL~e~~L~~AL~~~~~~f~~---qtg 460 (574)
T COG3850 391 LKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFR-------LTLQEAELPPALEQMLAEFSN---QTG 460 (574)
T ss_pred HHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcccCchHHHHHHHHHHHHh---ccC
Confidence 88888888753 45667788888888888888888888775433 344466777888888888875 456
Q ss_pred ceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEc
Q 006706 439 LSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDS 518 (634)
Q Consensus 439 i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~ 518 (634)
+.++++..-+......--..++-||+++.++||+||+.+.++.|.+....+. +++.|+||
T Consensus 461 ~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~g~--------------------~~~~VeDn 520 (574)
T COG3850 461 ITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQNDGQ--------------------VTLTVEDN 520 (574)
T ss_pred CeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecCCe--------------------EEEEEeeC
Confidence 6666654322111122235678899999999999999999999998877632 99999999
Q ss_pred CCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 519 GCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 519 G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
|+|||+..- ..| ..||.|++++++.+||.+.+++. +|+||.+.++||
T Consensus 521 G~Gi~~~~e----------------~~g-HyGL~IM~ERA~~L~~~L~i~~~-~~gGT~V~ltf~ 567 (574)
T COG3850 521 GVGIDEAAE----------------PSG-HYGLNIMRERAQRLGGQLRIRRR-EGGGTEVSLTFP 567 (574)
T ss_pred CcCCCCccC----------------CCC-CcchHHHHHHHHHhcCeEEEeec-CCCCeEEEEEec
Confidence 999998621 123 89999999999999999999999 999999999998
No 42
>PRK13560 hypothetical protein; Provisional
Probab=99.92 E-value=1.5e-23 Score=243.50 Aligned_cols=209 Identities=14% Similarity=0.163 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q 006706 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL 410 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~ 410 (634)
++++++++++++.++.|++.|+||+||||++|.++++++.+...+++...++.........+....+.+..
T Consensus 592 K~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------- 662 (807)
T PRK13560 592 KHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQ--------- 662 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34555666677788999999999999999999999999887766777766666666655555555544432
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEe
Q 006706 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE----GYVSIIASV 486 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~----g~i~v~~~~ 486 (634)
.....++++.++++++...+......+...+.+.++.+.......+...+.+|+.||++||+||+.+ |.+.+.+..
T Consensus 663 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~ 742 (807)
T PRK13560 663 SEDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIRE 742 (807)
T ss_pred cccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEE
Confidence 2234578999999999999888776666666666665544444446667889999999999999843 445555543
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEE
Q 006706 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIW 566 (634)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~ 566 (634)
..++ ++.|+|+|||+|||++... ..++||||+|||++|+.|||+|+
T Consensus 743 ~~~~-------------------~v~i~V~D~G~GI~~~~~~---------------~~~~gLGLai~~~iv~~~gG~I~ 788 (807)
T PRK13560 743 QGDG-------------------MVNLCVADDGIGLPAGFDF---------------RAAETLGLQLVCALVKQLDGEIA 788 (807)
T ss_pred cCCC-------------------EEEEEEEeCCCcCCccccc---------------cccCCccHHHHHHHHHHcCCEEE
Confidence 3222 5999999999999987421 13668999999999999999999
Q ss_pred EEecCCCCceEEEEEEEec
Q 006706 567 LDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 567 v~s~~~g~Gt~f~i~lP~~ 585 (634)
++|. +||+|+|+||+.
T Consensus 789 v~S~---~Gt~F~i~lP~~ 804 (807)
T PRK13560 789 LDSR---GGARFNIRFPMS 804 (807)
T ss_pred EEcC---CceEEEEEecCC
Confidence 9985 699999999974
No 43
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.91 E-value=5.5e-22 Score=195.30 Aligned_cols=213 Identities=19% Similarity=0.291 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLL---ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
..++-+..++||+++||+++..|+-... ++..++....+++.|..-++|+..+++.+..|+|..++..+ ..++++
T Consensus 450 vVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L 527 (673)
T COG4192 450 VVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRL 527 (673)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccH
Confidence 4467778899999999999998864433 44556677899999999999999999999999998766544 459999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEee--cCCCCCCCCC
Q 006706 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVA--KPESLSDWRP 497 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~--~~~~~~~~~~ 497 (634)
++.++.+.+.+....+.+.+.+.. +.+ ..+|.||...+.||+.|++-||++++......+.+... +.+
T Consensus 528 ~~~v~~AweLl~~khk~rQ~~Li~--ptD-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e------- 597 (673)
T COG4192 528 NSVVEQAWELLQTKHKRRQIKLIN--PTD-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQE------- 597 (673)
T ss_pred HHHHHHHHHHHHhhhhhccccccC--Ccc-cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCccc-------
Confidence 999999999999887777666554 333 44699999999999999999999987644334433333 232
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceE
Q 006706 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGST 577 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~ 577 (634)
.+++.|.|||+|.|-+..+++|.||.++|.. |.|+||+||..+++.|.|++.+.|. ..+|..
T Consensus 598 ------------~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v-----gLGlGLSIsqSlmeqmqG~l~lASt-Lt~nA~ 659 (673)
T COG4192 598 ------------MLRIAIIDNGQGWPHELVDKLLTPFTTSKEV-----GLGLGLSISQSLMEQMQGRLALAST-LTKNAM 659 (673)
T ss_pred ------------ceEEEEecCCCCCchhHHHHhcCCccccccc-----ccccchhHHHHHHHHhcCcchHhhh-cccCcE
Confidence 3899999999999999999999999988754 7899999999999999999999999 999999
Q ss_pred EEEEEEec
Q 006706 578 VTFLVKLG 585 (634)
Q Consensus 578 f~i~lP~~ 585 (634)
+.+.|...
T Consensus 660 ViL~f~v~ 667 (673)
T COG4192 660 VILEFQVD 667 (673)
T ss_pred EEEEEeec
Confidence 88888764
No 44
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.88 E-value=2.4e-21 Score=214.58 Aligned_cols=195 Identities=21% Similarity=0.293 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETV-LKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i-~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
..++++.++||++|||++|.+++++... ++..+++..+ .+...++..+++++.+ + +
T Consensus 339 ~~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-----~ 395 (542)
T PRK11086 339 YADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTANNYQEEIGSLLGKIKS--------------P-----V 395 (542)
T ss_pred HHHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHhccC--------------H-----H
Confidence 3456677899999999999998876432 2223333222 2222222223222210 0 1
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceE-EccHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCC
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYA-VGDEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v-~~d~~~l~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~~~ 498 (634)
+...+......+..+++.+.+..+...+... ..+...+.+++.||++||++|+. .+.+.+.+...++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~--------- 466 (542)
T PRK11086 396 IAGFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRNG--------- 466 (542)
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCC---------
Confidence 1111222223355678888887665554322 12345799999999999999964 3455555544332
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEE
Q 006706 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|+|+|||+||+++..+++|+||++++. .|+|+||++||++++.|||+|+++|. +|+||+|
T Consensus 467 -----------~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-----~g~GlGL~iv~~iv~~~~G~i~v~s~-~~~G~~f 529 (542)
T PRK11086 467 -----------WLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-----SNRGVGLYLVKQSVENLGGSIAVESE-PGVGTQF 529 (542)
T ss_pred -----------EEEEEEEECCCCCCHHHHHHHHhCCCccCC-----CCCcCcHHHHHHHHHHcCCEEEEEeC-CCCcEEE
Confidence 389999999999999999999999997663 48899999999999999999999998 8999999
Q ss_pred EEEEEecCC
Q 006706 579 TFLVKLGIC 587 (634)
Q Consensus 579 ~i~lP~~~~ 587 (634)
+++||+...
T Consensus 530 ~i~lP~~~~ 538 (542)
T PRK11086 530 FVQIPWDGE 538 (542)
T ss_pred EEEEeCCCC
Confidence 999998533
No 45
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=1.2e-20 Score=208.93 Aligned_cols=194 Identities=21% Similarity=0.257 Sum_probs=140.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHH
Q 006706 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (634)
Q Consensus 347 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (634)
.+..++||++|||++|.+++++- +..+.++.+...+.++..+++.+...... ..+...+
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~~--------------~~~~~~l 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFAD--------------RQVAGLL 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhccc--------------HHHHHHH
Confidence 34568999999999999987652 12345677777788888887777653221 1111112
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCC-ceEEccHHHHHHHHHHHHHHHhhcC---CCC--cEEEEEEeecCCCCCCCCCCCC
Q 006706 427 IKLIKPVASCKKLSMTLIMAPELP-TYAVGDEKRLMQTILNIVGNAVKFT---KEG--YVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~-~~v~~d~~~l~~vl~nLl~NAik~~---~~g--~i~v~~~~~~~~~~~~~~~~~~ 500 (634)
... ...+.++++.+.+..+.... .....|+..+.+++.||++||++|+ +.+ .+.+.+...++
T Consensus 400 ~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~----------- 467 (545)
T PRK15053 400 FGK-VQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGD----------- 467 (545)
T ss_pred HHH-HHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCC-----------
Confidence 111 22344677777765443321 1134589999999999999999995 333 34444333221
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006706 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.+.++|+|||+|||++..+++|++||+++... .+|+|+||++||++++.|||+|+++|. +|.||+|++
T Consensus 468 ---------~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL~ivk~iv~~~~G~i~v~s~-~~~Gt~f~i 535 (545)
T PRK15053 468 ---------DVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGLYLIASYVTRCGGVITLEDN-DPCGTLFSI 535 (545)
T ss_pred ---------EEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCHHHHHHHHHHcCCEEEEEEC-CCCeEEEEE
Confidence 48999999999999999999999999876542 247899999999999999999999999 899999999
Q ss_pred EEEec
Q 006706 581 LVKLG 585 (634)
Q Consensus 581 ~lP~~ 585 (634)
.||..
T Consensus 536 ~lP~~ 540 (545)
T PRK15053 536 FIPKV 540 (545)
T ss_pred EECCC
Confidence 99974
No 46
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.87 E-value=3.8e-18 Score=174.83 Aligned_cols=195 Identities=21% Similarity=0.274 Sum_probs=140.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHH
Q 006706 346 DFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLRE 425 (634)
Q Consensus 346 ~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~ 425 (634)
+-++..+||..|-|++|.|++++-.- ++. .+.|.+.++.-...++.+..--+ . ..+..
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLlql~~y----d~a---~~~I~~~~~~qq~~~~~l~~~i~-----------~----~~lAg 392 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLLQLGEY----DDA---LDYIQQESEEQQELIDSLSEKIK-----------D----PVLAG 392 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhccH----HHH---HHHHHHHHhhhhhhHHHHHHhcc-----------c----HHHHH
Confidence 45677899999999999999987322 233 33344444433444444332111 1 22233
Q ss_pred HHHHHHHhhhcCCceEEEEeCCCCCce-EEccHHHHHHHHHHHHHHHhhcCC--C--CcEEEEEEeecCCCCCCCCCCCC
Q 006706 426 VIKLIKPVASCKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTK--E--GYVSIIASVAKPESLSDWRPPEF 500 (634)
Q Consensus 426 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~d~~~l~~vl~nLl~NAik~~~--~--g~i~v~~~~~~~~~~~~~~~~~~ 500 (634)
.+---...+++.|+.+.++....+|.. ...+...+-.++-||++||+..+. . +.+.+.+....+
T Consensus 393 ~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~----------- 461 (537)
T COG3290 393 FLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGD----------- 461 (537)
T ss_pred HHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCC-----------
Confidence 332233346678888888776665542 123788899999999999999875 2 334444443333
Q ss_pred CccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEE
Q 006706 501 YPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTF 580 (634)
Q Consensus 501 ~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i 580 (634)
.+.++|.|+|+|||++..+++|+..++++.. .+.|+||++||+.|+++||.|+++|+ .+.||+|++
T Consensus 462 ---------~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----~~rGiGL~Lvkq~V~~~~G~I~~~s~-~~~Gt~F~i 527 (537)
T COG3290 462 ---------ELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----GGRGIGLYLVKQLVERLGGSIEVESE-KGQGTRFSI 527 (537)
T ss_pred ---------EEEEEEeCCCCCCChHHHHHHHhcCccccCC----CCCchhHHHHHHHHHHcCceEEEeeC-CCCceEEEE
Confidence 4999999999999999999999999998873 37799999999999999999999998 899999999
Q ss_pred EEEecCC
Q 006706 581 LVKLGIC 587 (634)
Q Consensus 581 ~lP~~~~ 587 (634)
.+|....
T Consensus 528 ~iP~~~~ 534 (537)
T COG3290 528 YIPKVKE 534 (537)
T ss_pred ECCCCcc
Confidence 9998644
No 47
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.85 E-value=2.8e-17 Score=182.97 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=135.3
Q ss_pred HHHHhhhHHHHHHHHH----HHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHH
Q 006706 351 MNHEMRTLMHAIIALS----SLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 424 (634)
Q Consensus 351 isHelr~PL~~I~~~~----~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~ 424 (634)
++||+++|+..+...+ +++... ...++..+.+..+.+...++...+++++...+ ....++++.+.+.
T Consensus 367 la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~~~l~ 439 (565)
T PRK10935 367 IARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLGSALE 439 (565)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHHHHHH
Confidence 5666666665554443 334332 22345556777777777777777777765333 3445789999999
Q ss_pred HHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccC
Q 006706 425 EVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVS 504 (634)
Q Consensus 425 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~ 504 (634)
+++..++.. .++.+.++.+.+.......++..+.|++.|++.||+||++.+.+.+......++
T Consensus 440 ~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~-------------- 502 (565)
T PRK10935 440 EMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNPDG-------------- 502 (565)
T ss_pred HHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCC--------------
Confidence 999888754 334444443322222233345679999999999999999888877776654232
Q ss_pred CCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006706 505 TDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 505 ~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~ 584 (634)
.+.++|.|+|+||+++. ..|+|+||++|+++++.|||+|+++|. +|+||+|++.+|.
T Consensus 503 -----~~~i~V~D~G~Gi~~~~-----------------~~~~glGL~i~~~iv~~~~G~i~v~s~-~~~Gt~~~i~lP~ 559 (565)
T PRK10935 503 -----EHTVSIRDDGIGIGELK-----------------EPEGHYGLNIMQERAERLGGTLTISQP-PGGGTTVSLTFPS 559 (565)
T ss_pred -----EEEEEEEECCcCcCCCC-----------------CCCCCcCHHHHHHHHHHcCCEEEEEEC-CCCcEEEEEEECC
Confidence 48999999999999752 136799999999999999999999999 8999999999997
Q ss_pred c
Q 006706 585 G 585 (634)
Q Consensus 585 ~ 585 (634)
.
T Consensus 560 ~ 560 (565)
T PRK10935 560 Q 560 (565)
T ss_pred C
Confidence 5
No 48
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-17 Score=159.88 Aligned_cols=245 Identities=16% Similarity=0.202 Sum_probs=185.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006706 290 DHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVALD-SARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSL 368 (634)
Q Consensus 290 ~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~ 368 (634)
.+..+++..++.|....+.......+.++.++.+.++..+-+ -+++-....+..+++.++.+++|+.+.+++|...+.+
T Consensus 248 s~l~dLll~l~~Qal~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~i 327 (497)
T COG3851 248 SHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGI 327 (497)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 567788888888865544444444444444444433222111 1333334445578899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCC
Q 006706 369 LLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPE 448 (634)
Q Consensus 369 l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~ 448 (634)
.++...++..++..+.|++-+.++.+.++.++.--| +...+...+.+.++++++.++ ..++||...++...+
T Consensus 328 vkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLR------P~~LDdL~l~qai~~l~~Em~--~~ergihcq~~~~~n 399 (497)
T COG3851 328 VKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLR------PRQLDDLTLEQAIRSLLREME--LEERGIHCQLDWRIN 399 (497)
T ss_pred HHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcC------CcccccccHHHHHHHHHHHhh--hhhcCeEEEeccccC
Confidence 998777888888888888888888888888875333 334457778889999988887 457899888877644
Q ss_pred CCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006706 449 LPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 449 ~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
....-..-+.-++++.+++++|-+||+++..+++.....++ .+.++|+|||.|+|+..
T Consensus 400 ~~~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e--------------------~l~Lei~DdG~Gl~~~~-- 457 (497)
T COG3851 400 ETALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE--------------------RLMLEIEDDGSGLPPGS-- 457 (497)
T ss_pred cccCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc--------------------EEEEEEecCCcCCCCCC--
Confidence 33222223455999999999999999999999998876544 38999999999999862
Q ss_pred hhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 529 LLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 529 ~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
+-.|+||..++++|..+||++.++|. .||++.+.+|
T Consensus 458 ----------------~v~G~Gl~GmrERVsaLGG~ltlssq---~GTrviVnLP 493 (497)
T COG3851 458 ----------------GVQGFGLTGMRERVSALGGTLTLSSQ---HGTRVIVNLP 493 (497)
T ss_pred ----------------CccCcCcchHHHHHHHhCCceEEEec---cCcEEEEecc
Confidence 23599999999999999999999997 8999999999
No 49
>PRK13559 hypothetical protein; Provisional
Probab=99.82 E-value=7.3e-19 Score=184.20 Aligned_cols=185 Identities=14% Similarity=0.201 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVL 423 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll 423 (634)
+.+|++.++|+++|||+.|.++++++... .+...+++.+.+.+.++..+++++++.. ..+++++.+++
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~---------~~~~v~l~~~~ 237 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDER---------GWETVEVEELI 237 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccC---------CcCcccHHHHH
Confidence 34688889999999999999999887632 2334577888888899998888877543 24578999999
Q ss_pred HHHHHHHHHhhhcCCceEEEEeCCCCCceEEc-cHHHHHHHHHHHHHHHhhcC---C-CCcEEEEEEeecCCCCCCCCCC
Q 006706 424 REVIKLIKPVASCKKLSMTLIMAPELPTYAVG-DEKRLMQTILNIVGNAVKFT---K-EGYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-d~~~l~~vl~nLl~NAik~~---~-~g~i~v~~~~~~~~~~~~~~~~ 498 (634)
+++...+.. .+..+.+..+ +.+ +.. +...|.+|+.||+.||+||+ . .|.+.+.+.....+
T Consensus 238 ~~~~~~~~~----~~~~i~~~~~-~~~--~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~-------- 302 (361)
T PRK13559 238 RAQVAPYAP----RATRVAFEGP-GIR--LGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEG-------- 302 (361)
T ss_pred HHHHHhhcC----CCceEEEECC-Cee--eCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCC--------
Confidence 998887653 2445555421 211 221 23569999999999999993 2 36666665322221
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHH-hCCEEEEEecCCCCceE
Q 006706 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNL-MGGHIWLDSEGLDKGST 577 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~-~gG~i~v~s~~~g~Gt~ 577 (634)
..+.+.|.|||.|++++. .|+|+||.+|+++++. |||++++++. +.||+
T Consensus 303 ----------~~~~i~v~d~G~~~~~~~------------------~~~g~Gl~i~~~~v~~~~gG~i~~~~~--~~G~~ 352 (361)
T PRK13559 303 ----------AGFRIDWQEQGGPTPPKL------------------AKRGFGTVIIGAMVESQLNGQLEKTWS--DDGLL 352 (361)
T ss_pred ----------CeEEEEEECCCCCCCCCC------------------CCCCcHHHHHHHHHHHHcCCeEEEEEc--CCeEE
Confidence 148999999999987652 3679999999999987 9999999997 46999
Q ss_pred EEEEEEec
Q 006706 578 VTFLVKLG 585 (634)
Q Consensus 578 f~i~lP~~ 585 (634)
|+++||+.
T Consensus 353 ~~l~~P~~ 360 (361)
T PRK13559 353 ARIEIPSR 360 (361)
T ss_pred EEEEEeCC
Confidence 99999964
No 50
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=1.4e-19 Score=155.11 Aligned_cols=109 Identities=33% Similarity=0.582 Sum_probs=98.5
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhcc
Q 006706 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (634)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~ 533 (634)
||+..+.+++.||+.||++|+++ +.+.+.+....+ ++.|+|+|+|.||+++.++++|++
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~d~G~gi~~~~l~~~~~~ 60 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD--------------------HLSIEISDNGVGIPPEELEKLFEP 60 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------EEEEEEEESSSSTTHHHHHHHCST
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------eEEEEEEeccccccccccccchhh
Confidence 68999999999999999999987 777777776654 399999999999999999999999
Q ss_pred ccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006706 534 FAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 534 f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~ 584 (634)
|++.+......+|.|+||++|+.++++|+|++++++. +++||+|+|.+|+
T Consensus 61 ~~~~~~~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~-~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 61 FFTSDKSETSISGHGLGLYIVKQIAERHGGELTIESS-EGGGTTVTFTLPL 110 (111)
T ss_dssp TSHSSSSSGGSSSSSHHHHHHHHHHHHTTEEEEEEEE-TTTEEEEEEEEEG
T ss_pred cccccccccccCCCChHHHHHHHHHHHCCCEEEEEEc-CCCcEEEEEEEEC
Confidence 9998875444568999999999999999999999999 8999999999996
No 51
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.78 E-value=1.6e-16 Score=166.04 Aligned_cols=195 Identities=22% Similarity=0.299 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeH
Q 006706 342 HARNDFRAVMNHEMRTLMHAIIALSSLLL--ETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 342 ~~~~~~~~~isHelr~PL~~I~~~~~~l~--~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
+++.++++.+|+.+.+-|+++....+... .+...++.++.++.+.+.++...+-++.+.. .+++...+-
T Consensus 169 ~ER~RIARdLHDsv~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~i~~~~~e~l~evR~~v~---------~Lrp~~l~~ 239 (365)
T COG4585 169 EERNRIARDLHDSVGQSLTAISMLLALLLLLADEDAEKAQEELKEIEKLLREALQEVRALVR---------DLRPVELEG 239 (365)
T ss_pred HHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCchhhc
Confidence 67889999999999999999986222221 2333455556565555555444444333322 222223333
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCC
Q 006706 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~ 499 (634)
..+...+...........++.+........+.+....+..+++++++.++|++||+++.++.+.+...++.
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~--------- 310 (365)
T COG4585 240 LGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQATEVRVTLERTDDE--------- 310 (365)
T ss_pred chHHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCceEEEEEEEcCCE---------
Confidence 33344444444444445566666655433233344467889999999999999999999999999887664
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006706 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
+.++|.|||+|++++.. +.|+||..+|++++.+||+++++|. +|+||+++
T Consensus 311 -----------l~l~V~DnG~Gf~~~~~------------------~~~~GL~~mreRv~~lgG~l~i~S~-~g~Gt~i~ 360 (365)
T COG4585 311 -----------LRLEVIDNGVGFDPDKE------------------GGGFGLLGMRERVEALGGTLTIDSA-PGQGTTVT 360 (365)
T ss_pred -----------EEEEEEECCcCCCcccc------------------CCCcchhhHHHHHHHcCCEEEEEec-CCCceEEE
Confidence 99999999999988632 1489999999999999999999999 89999999
Q ss_pred EEEEe
Q 006706 580 FLVKL 584 (634)
Q Consensus 580 i~lP~ 584 (634)
+++|+
T Consensus 361 i~lPl 365 (365)
T COG4585 361 ITLPL 365 (365)
T ss_pred EecCC
Confidence 99995
No 52
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.72 E-value=2.8e-16 Score=171.56 Aligned_cols=146 Identities=20% Similarity=0.347 Sum_probs=115.4
Q ss_pred eeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHH---HHHHHHHHhhcCC-------------CCcE
Q 006706 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFTK-------------EGYV 480 (634)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~v---l~nLl~NAik~~~-------------~g~i 480 (634)
+.+..++...-..++..+...+..+++.+.... ...|+..+.++ +.||+.||++|+- .|.+
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I 419 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNL 419 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCce
Confidence 446677777777777777666667777665543 45599999888 5799999999962 2456
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh---------------------hhhccccccCC
Q 006706 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP---------------------LLFTKFAQSRG 539 (634)
Q Consensus 481 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~---------------------~if~~f~~~~~ 539 (634)
.+......+ .+.|+|+|+|.||+++.+. .||+|+|+++.
T Consensus 420 ~l~a~~~~~--------------------~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~ 479 (670)
T PRK10547 420 ILSAEHQGG--------------------NICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAE 479 (670)
T ss_pred EEEEEEcCC--------------------EEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccc
Confidence 665544332 3899999999999986543 59999998876
Q ss_pred CCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006706 540 SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 540 ~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
..+..+|.|+||.+||++++.|||+|+++|. +|+||+|++.+|+..
T Consensus 480 ~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~-~g~Gt~f~i~LPltl 525 (670)
T PRK10547 480 QVTDVSGRGVGMDVVKRNIQEMGGHVEIQSK-QGKGTTIRILLPLTL 525 (670)
T ss_pred ccccCCCCchhHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEEechh
Confidence 5555579999999999999999999999999 999999999999875
No 53
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.69 E-value=7.4e-13 Score=126.16 Aligned_cols=204 Identities=16% Similarity=0.205 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeH
Q 006706 340 AIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 340 ~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
..+++.++++.+++.+.+-|-+..-.+++....-.++.. -....+.++++++..-|+++..+|.- -.+--.....|
T Consensus 247 QedEr~rlaRELHDGIsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH~---LRP~~LDDLGL 322 (459)
T COG4564 247 QEDERARLARELHDGISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISHD---LRPRALDDLGL 322 (459)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhccc---cChhhhhhhhH
Confidence 345577889999999999999998888888765332221 11245677778888888888777651 11112234455
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCC
Q 006706 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~ 499 (634)
...++.+++.++ ...|+.++++.+.............+++|.++.++|.=+|+...++.+......+
T Consensus 323 ~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~~~d---------- 389 (459)
T COG4564 323 TAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQMGD---------- 389 (459)
T ss_pred HHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCc----------
Confidence 666666666665 4678888887765443344445678999999999999999987777777665544
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006706 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+.+.|+|||+|++.+... .+-.|+||..+++.++..||++.++|. + +||.++
T Consensus 390 ----------~vql~vrDnG~GF~~~~~~---------------~~~~GiGLRNMrERma~~GG~~~v~s~-p-~GTel~ 442 (459)
T COG4564 390 ----------MVQLMVRDNGVGFSVKEAL---------------QKRHGIGLRNMRERMAHFGGELEVESS-P-QGTELT 442 (459)
T ss_pred ----------ceEEEEecCCCCccchhhc---------------cCccccccccHHHHHHHhCceEEEEec-C-CCcEEE
Confidence 3999999999999875321 112499999999999999999999998 4 599999
Q ss_pred EEEEecCC
Q 006706 580 FLVKLGIC 587 (634)
Q Consensus 580 i~lP~~~~ 587 (634)
+.+|....
T Consensus 443 v~Lp~~~~ 450 (459)
T COG4564 443 VLLPLDAS 450 (459)
T ss_pred EEecchhh
Confidence 99998643
No 54
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.59 E-value=1e-12 Score=125.32 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
.+..++..++|.+||-|+.|.+++.+-.+...++ ..+.+......+..|....+.|.. . .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sla~~He~L~~---------s-~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSLALIHELLYK---------S-GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHhc---------C-CcceEcHHHH
Confidence 3567888899999999999999998877665554 555566565555555544444321 1 2347889999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEeecCCCCCCCCCC
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~----~g~i~v~~~~~~~~~~~~~~~~ 498 (634)
++.+...+.+....+.+.+....+++.. +-.....-|.-|+.+|++||+||+- .|.+.|.....++++
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~-l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~------- 158 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNVF-LDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGG------- 158 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCceE-ECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCC-------
Confidence 9999998887654456666665554322 1222456689999999999999973 466777777665431
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHH-HHhCCEEEEEecCCCCceE
Q 006706 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFV-NLMGGHIWLDSEGLDKGST 577 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv-~~~gG~i~v~s~~~g~Gt~ 577 (634)
...+.|.|+|.|++.+.- + ...|+|+.+++.++ +..||.+...+. .||+
T Consensus 159 -----------~~~l~v~deg~G~~~~~~------~----------~~~g~G~~Lv~~lv~~q~~g~~~~~~~---~Gt~ 208 (221)
T COG3920 159 -----------RFLLTVWDEGGGPPVEAP------L----------SRGGFGLQLVERLVPEQLGGELEDERP---DGTE 208 (221)
T ss_pred -----------eEEEEEEECCCCCCCCCC------C----------CCCCcHHHHHHHHHHHHcCCeEEEEcC---CCEE
Confidence 278999999999987621 0 13499999999999 899999999886 4999
Q ss_pred EEEEEEecCC
Q 006706 578 VTFLVKLGIC 587 (634)
Q Consensus 578 f~i~lP~~~~ 587 (634)
|++++|....
T Consensus 209 ~~i~~~~~~~ 218 (221)
T COG3920 209 FRLRFPLSEA 218 (221)
T ss_pred EEEEEecccc
Confidence 9999997643
No 55
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.57 E-value=1.1e-13 Score=151.96 Aligned_cols=147 Identities=22% Similarity=0.349 Sum_probs=115.3
Q ss_pred eeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHH---HHHHHHHHhhcC-------------CCCc
Q 006706 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQT---ILNIVGNAVKFT-------------KEGY 479 (634)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~v---l~nLl~NAik~~-------------~~g~ 479 (634)
.+.+..++...-...+..+.+-|-++++.+.+.... .|+..+.++ |.+|+.||+.|. +.|.
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~te---lDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDTE---LDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecCCee---ehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcce
Confidence 345566666666666666666666666666665432 277777776 679999999994 2366
Q ss_pred EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh------------------------hhhhcccc
Q 006706 480 VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFA 535 (634)
Q Consensus 480 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------------------------~~if~~f~ 535 (634)
++++.....+ .+.|+|+|+|.||+.+.+ .-||.|.|
T Consensus 466 I~L~A~~~gn--------------------~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGF 525 (716)
T COG0643 466 ITLSAYHEGN--------------------NIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGF 525 (716)
T ss_pred EEEEEEcCCC--------------------eEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCC
Confidence 6666554433 499999999999976532 34899999
Q ss_pred ccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006706 536 QSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 536 ~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
++...-+.-+|.|.||-++|+-++++||+|+++|. +|+||+|++.||+..
T Consensus 526 STa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~-~G~GT~Fti~LPLTL 575 (716)
T COG0643 526 STAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSE-PGKGTTFTIRLPLTL 575 (716)
T ss_pred CcchhhhcccCCccCHHHHHHHHHHcCCEEEEEec-CCCCeEEEEecCcHH
Confidence 99998888889999999999999999999999999 999999999999973
No 56
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.56 E-value=9.4e-11 Score=117.83 Aligned_cols=317 Identities=18% Similarity=0.178 Sum_probs=184.9
Q ss_pred HHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCCeEEcCCCCchhhhhhcccccC
Q 006706 164 KTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYV 243 (634)
Q Consensus 164 ~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (634)
..+.+-+.+.++++.+++ +|.+...-....+.+. .....++..+....+++.++.+......+ ++. ....
T Consensus 228 ~~va~Ii~~~~~~~AVai--Td~e~ilA~vg~g~dh---hi~g~~i~s~~t~~ai~~g~vv~~~~~e~---~~c--sh~~ 297 (557)
T COG3275 228 MKVAEIIYEELGAGAVAI--TDREKLLAFVGIGDDH---HIPGKPIISSLTRKAIKTGEVVYADGNEV---YEC--SHPT 297 (557)
T ss_pred HHHHHHHHHHhCCCeEEe--cCHHHHHHhhcccccc---cCCCCeeccHHHHHHHhhCCEEEEccchh---hcc--CCCC
Confidence 445566777777766665 3322211111111111 11223445566678888888766654444 221 1444
Q ss_pred CCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 244 PPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQL 323 (634)
Q Consensus 244 ~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l 323 (634)
.+-.+.+..|+.+. +.++|.+-.....++.++..+.++.+-++.-+..-++. .+.++++
T Consensus 298 c~l~s~lViPL~~~--------------g~ViGTiK~y~~~~~lis~~~r~la~Gia~l~SaQie~----ge~e~q~--- 356 (557)
T COG3275 298 CKLGSALVIPLRGK--------------GRVIGTIKLYEAKARLISSINRELAEGIAQLLSAQIEA----GEAERQR--- 356 (557)
T ss_pred CCcCCceEeecccC--------------CceeeeEEEEeccHhHhhHHHHHHHHHHHHHHHHHHHH----hHHHHHH---
Confidence 55566667776443 44577777776666677766666555444433222211 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 324 MEQNVALDSARREAEKAIHARNDFRA-VMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (634)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 402 (634)
+.+.+++ .+.+-+ .=.|=+-|-|+.|+.... ++.+...+++-++..|
T Consensus 357 ----~ll~~AE---------ik~LqaQvnPHFLFNaLNTIsa~IR-------------------~npdkAreLil~LS~y 404 (557)
T COG3275 357 ----ELLKQAE---------IKALQAQVNPHFLFNALNTISAVIR-------------------RNPDKARELILYLSTY 404 (557)
T ss_pred ----HHHHHHH---------HHHHHhccChHHHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHH
Confidence 1111111 112222 236888899988875542 2222333444455555
Q ss_pred HhhhCCCccccceeeeHHHHHHHHHHHHHHhhh--cCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-----
Q 006706 403 SRLEDGSLELDNGPFNLQIVLREVIKLIKPVAS--CKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT----- 475 (634)
Q Consensus 403 ~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~----- 475 (634)
-|..-.. ...+.++|.+-++++-..++-.-. ...+++.+++++.... +. -| .-+++-|+.||+||+
T Consensus 405 fR~NL~~--~~~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~-~~-iP---~filQPLVENAIKHG~~~~~ 477 (557)
T COG3275 405 FRYNLEN--NTQEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQ-VQ-IP---SFILQPLVENAIKHGISQLK 477 (557)
T ss_pred HHHHhcC--CcceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhh-cc-Cc---hhhhhHHHHHHHHhcccchh
Confidence 4432211 123478888888887777653321 2345666666554432 11 22 246788999999997
Q ss_pred CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHH
Q 006706 476 KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICR 555 (634)
Q Consensus 476 ~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k 555 (634)
..|.+.+++...+.+ +.+.|+|||.|++++. ..|+|+||+.++
T Consensus 478 ~~g~V~I~V~~~d~~--------------------l~i~VeDng~li~p~~-----------------~~g~giGL~nv~ 520 (557)
T COG3275 478 DTGRVTISVEKEDAD--------------------LRIEVEDNGGLIQPDE-----------------EDGTGIGLANVH 520 (557)
T ss_pred cCCceEEEEEEeCCe--------------------EEEEEecCCCCcCCCC-----------------CCCCChHHHHHH
Confidence 347777777766554 9999999999999851 247899999999
Q ss_pred HHHHHhCC---EEEEEecCCCCceEEEEEEEecCCC
Q 006706 556 RFVNLMGG---HIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 556 ~iv~~~gG---~i~v~s~~~g~Gt~f~i~lP~~~~~ 588 (634)
++++.+=| -+.+++. +..||++.+++|.+...
T Consensus 521 ~RLk~lyG~~~gl~i~~~-~q~gTri~f~lp~~~~~ 555 (557)
T COG3275 521 KRLKLLYGDDEGLHIESL-EQAGTRIIFRLPLQRTA 555 (557)
T ss_pred HHHHHhcCccccceEEec-cCCCcEEEEEecCcccc
Confidence 99998877 6888888 77899999999987543
No 57
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.48 E-value=3.7e-13 Score=141.98 Aligned_cols=146 Identities=18% Similarity=0.257 Sum_probs=102.6
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh
Q 006706 454 VGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (634)
Q Consensus 454 ~~d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~ 529 (634)
.++...|.+++.||++||++|+..+ .+.+.+.....+ ...+.|+|+|||+||+++++++
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~-----------------~~~~~I~V~DNG~GIp~e~l~~ 93 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEG-----------------KDHYRVTVEDNGPGIPPEEIPK 93 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCC-----------------CcEEEEEEEcCCCCCCHHHHHH
Confidence 3456789999999999999999764 355554432111 1148899999999999999999
Q ss_pred hhccccccCCCC---CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCCCCCCCCCCcCcccCCCC
Q 006706 530 LFTKFAQSRGSS---CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGICNNPGSPIHPVALKGRAS 604 (634)
Q Consensus 530 if~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt-~f~i~lP~~~~~~~~~~~~~~~~~~~~~ 604 (634)
+|++|+.+.... ...++.|+||++|+.+++.|+|. +++.|. +++|+ .|++.+|++.....+..... ..
T Consensus 94 iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~-~~~g~~~~~~~l~id~~kn~g~i~~~----~~-- 166 (535)
T PRK04184 94 VFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISS-TGGSKKAYYFELKIDTKKNEPIILER----EE-- 166 (535)
T ss_pred HhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEe-cCCCceEEEEEEEecccccCCeeccc----cc--
Confidence 999986543221 12246899999999999999987 999998 78888 89999998754432211000 00
Q ss_pred CCCCCCCCCceEEecCchh
Q 006706 605 HGSADLTGPKPLFRDNDQI 623 (634)
Q Consensus 605 ~~~~~~~~~~vLvvDD~~~ 623 (634)
......+|-+|.|..|...
T Consensus 167 ~~~~~~~GT~V~V~l~~~~ 185 (535)
T PRK04184 167 VDWDRWHGTRVELEIEGDW 185 (535)
T ss_pred cCCCCCCCEEEEEEECCcC
Confidence 0112247888888665554
No 58
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.46 E-value=8.3e-13 Score=112.29 Aligned_cols=110 Identities=36% Similarity=0.641 Sum_probs=92.1
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhcc
Q 006706 455 GDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTK 533 (634)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~ 533 (634)
+|...|.+++.|++.||++|+.. +.+.+.+..... .+.+.|.|+|.|++++...++|.+
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~--------------------~~~i~i~d~g~g~~~~~~~~~~~~ 60 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD--------------------HLEITVEDNGPGIPPEDLEKIFEP 60 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC--------------------EEEEEEEeCCCCCCHHHHHHHhcC
Confidence 47788999999999999999987 666666554432 389999999999999999999999
Q ss_pred ccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006706 534 FAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 534 f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
++..+.......+.|+||++|+.+++.|+|++++.+. ++.|++|++.+|+.
T Consensus 61 ~~~~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~~~~ 111 (111)
T smart00387 61 FFRTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESE-PGGGTTFTITLPLE 111 (111)
T ss_pred eEECCCCCCCCCcccccHHHHHHHHHHcCCEEEEEec-CCCcEEEEEEeeCC
Confidence 8876532222347899999999999999999999987 78999999999963
No 59
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.27 E-value=4.1e-11 Score=128.97 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=88.9
Q ss_pred cCCceEEEEeCCCCCce-EEccHHHHHHHHHHHHHHHhhcCCCCc----EEEEEEeecCCCCCCCCCCCCCccCCCCceE
Q 006706 436 CKKLSMTLIMAPELPTY-AVGDEKRLMQTILNIVGNAVKFTKEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFY 510 (634)
Q Consensus 436 ~~~i~~~~~~~~~~~~~-v~~d~~~l~~vl~nLl~NAik~~~~g~----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (634)
.+.+.+...+..+.+.. ...|...|.+++.|||+||++|+..+. +.+.+.. .+. +
T Consensus 22 ~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~--~g~------------------~ 81 (795)
T PRK14868 22 QREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEE--VGD------------------Y 81 (795)
T ss_pred ccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--CCC------------------E
Confidence 46667766665554432 223577899999999999999997653 4444433 221 4
Q ss_pred EEEEEEEcCCCCCCCChhhhhccccccCC-----CCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCC-ceEEEEEEEe
Q 006706 511 LRVQVNDSGCGVPPQDIPLLFTKFAQSRG-----SSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK-GSTVTFLVKL 584 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~-Gt~f~i~lP~ 584 (634)
+.|.|+|||+||++++++++|++|+.+.. ......|.|||++++...+. +||.+++.|. .+. +..+.+.+++
T Consensus 82 v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt-~GgpI~I~S~-~~~~~~g~~~~L~I 159 (795)
T PRK14868 82 YRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT-SGKPAKITSR-TQGSEEAQYFELII 159 (795)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHc-CCCcEEEEeC-CCCCCceeEEEEEE
Confidence 89999999999999999999999875421 11123366666666666663 7899999998 543 4445455655
Q ss_pred cCC
Q 006706 585 GIC 587 (634)
Q Consensus 585 ~~~ 587 (634)
...
T Consensus 160 d~g 162 (795)
T PRK14868 160 DTD 162 (795)
T ss_pred ecC
Confidence 444
No 60
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.25 E-value=4.8e-11 Score=99.69 Aligned_cols=101 Identities=36% Similarity=0.617 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcCCC--CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhcccccc
Q 006706 460 LMQTILNIVGNAVKFTKE--GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (634)
Q Consensus 460 l~~vl~nLl~NAik~~~~--g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (634)
+.+++.+++.||++|+.. +.+.+.+..... .+.|.|.|+|.|+++...++.|.++...
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~--------------------~~~v~i~d~g~g~~~~~~~~~~~~~~~~ 60 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVERDGD--------------------HLEIRVEDNGPGIPEEDLERIFERFSDG 60 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEEecCC--------------------EEEEEEEeCCCCCCHHHHHHHhhhhhcC
Confidence 357899999999999984 555555544322 3899999999999999999998876211
Q ss_pred CCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006706 538 RGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 538 ~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
.......+.|+||.+|+++++.|||++++.+. .+.|++|++.+
T Consensus 61 -~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~-~~~g~~~~~~~ 103 (103)
T cd00075 61 -SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE-PGGGTTFTITL 103 (103)
T ss_pred -CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC-CCCcEEEEEEC
Confidence 11112347899999999999999999999998 67899988763
No 61
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.25 E-value=1e-09 Score=123.92 Aligned_cols=188 Identities=18% Similarity=0.225 Sum_probs=138.6
Q ss_pred HHHHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEE--EEeecccc--ccc
Q 006706 129 LDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL--SYTLNNQI--QIG 204 (634)
Q Consensus 129 l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~--~~~~~~~~--~~~ 204 (634)
.++..+.++++....+.+.++++.+.+..|+++++..+++.+.+.++++.|+|+++|+++..+.+ +++.+... ..+
T Consensus 170 ~~~~~~~L~~~r~~~~~L~eIs~~l~s~~dl~ell~~I~~~i~~~~~a~~~~I~L~d~~~~~L~~~aa~g~~~~~~~~~~ 249 (686)
T PRK15429 170 NNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDAISIVLRSHRKNKLNIYSTHYLDKQHPAHEQ 249 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCcEEEEEecccChhhccccc
Confidence 33444445555566889999999999999999999999999999999999999999988776655 33332221 123
Q ss_pred cccccCChhHHHHhccCCeEEcCCCCchhhhhhcc---cccCCCCceEEeeccccccCccccCCCcccccccEEEEEEec
Q 006706 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLV---GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLP 281 (634)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~ 281 (634)
..++...+.++.++.+++++.+.+...+....... ..........+.+||. .++..+||+.+.
T Consensus 250 ~~~~~~~~l~g~V~~~~~p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~--------------~~~~v~GvL~l~ 315 (686)
T PRK15429 250 SEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM--------------SGDTMLGVLKLA 315 (686)
T ss_pred ccCCcccchHHHHHhcCceEEEECccCcccchhhhhhhhcccccceEEEEEeEE--------------ECCEEEEEEEEe
Confidence 34555668899999999999987655443221110 1111234556667753 345578898887
Q ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 282 TDGGRKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQLMEQNVAL 330 (634)
Q Consensus 282 ~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l 330 (634)
+.....|++++++++..+|+++|+|++++..+++.++..+++++++..+
T Consensus 316 ~~~~~~F~~~dl~lL~~iA~~~A~Aie~a~~~~~~~~~~~~L~~e~~~l 364 (686)
T PRK15429 316 QCEEKVFTTTNLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLAL 364 (686)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhHHHHH
Confidence 6678899999999999999999999999999998887777776655443
No 62
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.24 E-value=2.9e-12 Score=144.62 Aligned_cols=241 Identities=30% Similarity=0.351 Sum_probs=198.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHH
Q 006706 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (634)
Q Consensus 347 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (634)
+...++||+++|++. +....+.....+.+++.+.......+.....+++++++.++.+.+..++...+|++..++..+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 999999999999987 555555566778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCC-----CCCC----
Q 006706 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLS-----DWRP---- 497 (634)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~-----~~~~---- 497 (634)
.+.+...+.+++..+....+.+.|..+.+|+..+.|++.|++.||+|++..|.+.......+..... .|..
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~~e~~~ 381 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRAKEEAHM 381 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhhhhhhhh
Confidence 9999999999999999988888888899999999999999999999999999888877665543210 0000
Q ss_pred --------------CCCCccCC---C--CceEEEEEEEEcCCCCCCCChhh-hhccccccCCCCCC-CCCccccHHHHHH
Q 006706 498 --------------PEFYPVST---D--GHFYLRVQVNDSGCGVPPQDIPL-LFTKFAQSRGSSCQ-TPRAGLGLAICRR 556 (634)
Q Consensus 498 --------------~~~~~~~~---~--~~~~l~i~V~D~G~Gi~~~~~~~-if~~f~~~~~~~~~-~~g~GlGL~i~k~ 556 (634)
....+... . .-..-.+.+.|+|.||+...... +|.+|.+......+ .+|+|+|+.+++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~ 461 (786)
T KOG0519|consen 382 AGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFS 461 (786)
T ss_pred ccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhcc
Confidence 00000000 0 01124567899999999988877 99999887766554 4599999999999
Q ss_pred HHHHhCCEEEEEecCCCCceEEEEEEEecCCCCC
Q 006706 557 FVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNP 590 (634)
Q Consensus 557 iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~~ 590 (634)
+++.++|.+.+.+. ...|++|++.+++....+.
T Consensus 462 l~~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~ 494 (786)
T KOG0519|consen 462 LVELMSGEISDISC-ISLGKTFSFTLDLLTNLPK 494 (786)
T ss_pred HHHHHHHHhhhhhh-hccCceeeEEEEeccCCCc
Confidence 99999999999998 8899999999999766543
No 63
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.21 E-value=1.5e-10 Score=103.05 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~----~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+..++.|+++||++|+. .+.+.+.+...++ .+.++|.|+|.||+ ..+++|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~--------------------~~~i~I~D~G~gi~--~~~~~~ 93 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH--------------------EVYITVRDEGIGIE--NLEEAR 93 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC--------------------EEEEEEEEcCCCcC--chhHhh
Confidence 566799999999999999863 2445555544332 38999999999997 367899
Q ss_pred ccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006706 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
+||++.+.. ..+.|+||+++++ +.+++++++. +++||+|+++.
T Consensus 94 ~~~~~~~~~---~~~~GlGL~lv~~----~~~~l~~~~~-~~~Gt~v~i~~ 136 (137)
T TIGR01925 94 EPLYTSKPE---LERSGMGFTVMEN----FMDDVSVDSE-KEKGTKIIMKK 136 (137)
T ss_pred CCCcccCCC---CCCCcccHHHHHH----hCCcEEEEEC-CCCCeEEEEEe
Confidence 999876542 2478999998876 4579999998 89999998864
No 64
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.20 E-value=9.8e-11 Score=122.50 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=84.2
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006706 453 AVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 453 v~~d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
+.++...|.+++.||++||++|+..+ .+.+.+.....+ ++.|+|+|||+||++++++
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~-------------------~~~I~V~DNG~GIp~edl~ 82 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKD-------------------HYKVTVEDNGPGIPEEYIP 82 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------eEEEEEEECCCCCCHHHHH
Confidence 34578899999999999999998753 344444332221 3789999999999999999
Q ss_pred hhhccccccCCCC---CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCceEE--EEEEEe
Q 006706 529 LLFTKFAQSRGSS---CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTV--TFLVKL 584 (634)
Q Consensus 529 ~if~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt~f--~i~lP~ 584 (634)
++|++|+.+.... ...++.|+||++++.+++.|+|+ +++.|. .+ |..| ++.+.+
T Consensus 83 ~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~-~~-g~~~~~~~~~~i 142 (488)
T TIGR01052 83 KVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISS-TG-GEIYVYKMKLKI 142 (488)
T ss_pred hhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEe-cC-CceEEEEEEEEe
Confidence 9999987654422 12247899999999999999999 999998 44 5555 444443
No 65
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.18 E-value=2.6e-09 Score=114.79 Aligned_cols=95 Identities=23% Similarity=0.352 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhcCC-----CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccc
Q 006706 460 LMQTILNIVGNAVKFTK-----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKF 534 (634)
Q Consensus 460 l~~vl~nLl~NAik~~~-----~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f 534 (634)
+..+++.|++||++|+- .|.+.+.....+. .+.++|+|||+||+++....+....
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~--------------------~i~i~i~Dng~g~~~~~~~~~~~~~ 410 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDD--------------------VIQISISDNGPGIDEEKLEGLSTKG 410 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCC--------------------EEEEEEeeCCCCCChhHHHHHHhhc
Confidence 56688999999999982 2445555544422 5999999999999998776553321
Q ss_pred cccCCCCCCCCC-ccccHHHHHHHHHHhCCE--EEEEecCCCCceEEEEEEEec
Q 006706 535 AQSRGSSCQTPR-AGLGLAICRRFVNLMGGH--IWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 535 ~~~~~~~~~~~g-~GlGL~i~k~iv~~~gG~--i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
++ .|+||..++++++.+-|. +.++|. +++||.+.+.+|..
T Consensus 411 ----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~-~~~gt~v~~~~~~~ 453 (456)
T COG2972 411 ----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQ-PGKGTFVQIIIPKR 453 (456)
T ss_pred ----------cCcccccHHHHHHHHHHeeCCcceeEeec-CCCcEEEEEEeehh
Confidence 12 499999999999999887 689999 99999999999964
No 66
>PRK03660 anti-sigma F factor; Provisional
Probab=99.17 E-value=3.5e-10 Score=101.82 Aligned_cols=103 Identities=22% Similarity=0.321 Sum_probs=79.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~----g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+.+++.|++.||++|+.. +.+.+.....++ .+.++|.|+|.||++ ..+.|
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~--------------------~l~i~I~D~G~g~~~--~~~~~ 93 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEE--------------------ELEITVRDEGKGIED--IEEAM 93 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCC--------------------EEEEEEEEccCCCCh--HHHhh
Confidence 5677899999999999998743 345555543322 389999999999976 56889
Q ss_pred ccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006706 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~ 588 (634)
++|++..... .+.|+||+++++ +.+++++++. ++.||+|+++.++....
T Consensus 94 ~~~~~~~~~~---~~~GlGL~i~~~----~~~~i~~~~~-~~~Gt~~~i~~~~~~~~ 142 (146)
T PRK03660 94 QPLYTTKPEL---ERSGMGFTVMES----FMDEVEVESE-PGKGTTVRMKKYLKKSK 142 (146)
T ss_pred CCCcccCCCC---CCccccHHHHHH----hCCeEEEEec-CCCcEEEEEEEEecccc
Confidence 9998755422 367999998774 5678999998 89999999999987553
No 67
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=99.17 E-value=2.4e-09 Score=120.15 Aligned_cols=160 Identities=15% Similarity=0.121 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecc--ccccccccccCChhHHHHhcc
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN--QIQIGSSVPINLPIVTDVFNS 220 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 220 (634)
+..++++++.+.+..|++++|+.+++.+.+.++++.|.||+.|+++..+......+. .......++.+.+.++.+..+
T Consensus 2 L~~L~eIs~~L~s~~dL~e~L~~Iv~~~~~~l~~d~~sI~L~D~~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~t 81 (748)
T PRK11061 2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81 (748)
T ss_pred hHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEeeCCChHhccceeccCCcchHHHHhcc
Confidence 356889999999999999999999999999999999999999988876655544443 333344667788999999999
Q ss_pred CCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHH
Q 006706 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (634)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a 300 (634)
++++.+++...++++.........+.++.+++||.. ++..+|++.+.+..++.|++++.+++..+|
T Consensus 82 g~pV~V~Dv~~dprf~~~~~~~~~~~~S~L~VPL~~--------------~geVIGVL~v~~~~~~~Fs~~d~~lL~~LA 147 (748)
T PRK11061 82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIY--------------RRQLLGVLVVQQRELRQFDESEESFLVTLA 147 (748)
T ss_pred CceEEECCcccCcccccCccccCccceEEEEEEEee--------------CCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 999999999988877543332345567788888743 334799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006706 301 DQVAVALSHAAILEDS 316 (634)
Q Consensus 301 ~~~a~al~~a~l~~~~ 316 (634)
.+++++++|++..+..
T Consensus 148 ~~aAiAL~na~l~~~~ 163 (748)
T PRK11061 148 TQLAAILSQSQLTALF 163 (748)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999999987666
No 68
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.12 E-value=3.8e-10 Score=121.61 Aligned_cols=112 Identities=19% Similarity=0.328 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...|.+++.||++||++++..+ .+.+.+.....+ ++.++|.|||+||+++.++++|
T Consensus 33 ~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~-------------------~~~I~V~DNG~GIp~e~l~~iF 93 (659)
T PRK14867 33 KLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSD-------------------HYKVAVEDNGPGIPPEFVPKVF 93 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCc-------------------EEEEEEEeeCeeCCHHHHhhhh
Confidence 33446699999999999998753 455554432221 4889999999999999999999
Q ss_pred ccccccCCCC---CCCCCccccHHHHHHHHHHh-CCEEEEEecCCCCceEEEEEEEecCC
Q 006706 532 TKFAQSRGSS---CQTPRAGLGLAICRRFVNLM-GGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 532 ~~f~~~~~~~---~~~~g~GlGL~i~k~iv~~~-gG~i~v~s~~~g~Gt~f~i~lP~~~~ 587 (634)
++|+++..-. ...++.|+||+++..+.+.+ ||.+++.|. ++.|++|++.+|+...
T Consensus 94 erF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~-~g~G~~f~i~L~i~i~ 152 (659)
T PRK14867 94 GKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTS-TGDGKIHEMEIKMSVE 152 (659)
T ss_pred ccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEE-cCCCEEEEEEEEEEec
Confidence 9987754321 12236899999999999876 666999998 8999999999999764
No 69
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.09 E-value=8.3e-10 Score=84.92 Aligned_cols=65 Identities=37% Similarity=0.656 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLE-TDLTPEQ-RVMIETVLKSSNLLTTLVDDVLDLSRLEDG 408 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~-~~~~~~~-~~~l~~i~~~~~~l~~li~~ll~~~~~~~~ 408 (634)
+++|++.++||+||||++|.++++++.. ...+++. +++++.+..+++++..++++++++++.+.|
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6789999999999999999999999999 7777877 999999999999999999999999998764
No 70
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=99.04 E-value=3.2e-09 Score=96.78 Aligned_cols=106 Identities=17% Similarity=0.214 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~----g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|+|++++.....|
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~g~d~~~~~~~~ 98 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED--------------------RLEIVVADNGVSFDYETLKSKL 98 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC--------------------EEEEEEEECCcCCChHHhcccc
Confidence 4566888999999999999864 345555554432 4999999999999998888888
Q ss_pred ccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCC
Q 006706 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNN 589 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~ 589 (634)
.|++..+.... ..+.|+||.+++++++. +.+.+. .|+++++.-.+...+.
T Consensus 99 ~p~~~~~~~~~-~~~~G~GL~li~~l~d~----v~~~~~---~G~~v~~~k~~~~~~~ 148 (161)
T PRK04069 99 GPYDISKPIED-LREGGLGLFLIETLMDD----VTVYKD---SGVTVSMTKYINREQV 148 (161)
T ss_pred CCCCCCCcccc-cCCCceeHHHHHHHHHh----EEEEcC---CCcEEEEEEEcCchhc
Confidence 88876554321 23569999999999986 556543 5888888877755544
No 71
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.96 E-value=1.4e-07 Score=92.64 Aligned_cols=189 Identities=19% Similarity=0.252 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc----cccceeeeHHHHHHHHHHHHHHhhhcCCc---eEEEEeCCCC
Q 006706 377 EQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSL----ELDNGPFNLQIVLREVIKLIKPVASCKKL---SMTLIMAPEL 449 (634)
Q Consensus 377 ~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~----~l~~~~~~l~~ll~~~~~~~~~~~~~~~i---~~~~~~~~~~ 449 (634)
..+..|+....+--.+..++++-+-+-....... -.-...+++.++++++.+..+..+..+=+ ++.++-....
T Consensus 172 ~iqyFLdr~y~sRIsiRMLv~qh~~l~~~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~ 251 (414)
T KOG0787|consen 172 NIQYFLDRFYMSRISIRMLVNQHLLLFASGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNAL 251 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheecCCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccc
Confidence 3456777766665556666665443322111110 01123678999999999999887764422 2333333333
Q ss_pred CceEEccHHHHHHHHHHHHHHHhhcC-----CCCc----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC
Q 006706 450 PTYAVGDEKRLMQTILNIVGNAVKFT-----KEGY----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC 520 (634)
Q Consensus 450 ~~~v~~d~~~l~~vl~nLl~NAik~~-----~~g~----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~ 520 (634)
...+ .-|..|..++.+|+.||++++ ..+. +.|.+...+++ +.|.|+|.|.
T Consensus 252 ~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeD--------------------l~ikISDrGG 310 (414)
T KOG0787|consen 252 SFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDED--------------------LLIKISDRGG 310 (414)
T ss_pred cCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc--------------------eEEEEecCCC
Confidence 2222 368899999999999999975 2233 55555443333 8899999999
Q ss_pred CCCCCChhhhhccccccCCCCC-------CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006706 521 GVPPQDIPLLFTKFAQSRGSSC-------QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 521 Gi~~~~~~~if~~f~~~~~~~~-------~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~ 587 (634)
||+.++.+++|+-.|++.+... .-.|.|.||.|+|..++..||.+.+.|- .|-||-..+.+.....
T Consensus 311 GV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sl-eG~GTD~yI~Lk~ls~ 383 (414)
T KOG0787|consen 311 GVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSL-EGIGTDVYIYLKALSM 383 (414)
T ss_pred CcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEee-eccccceEEEeccCCc
Confidence 9999999999998888644311 1138899999999999999999999999 8999999999875443
No 72
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.88 E-value=1.1e-07 Score=104.58 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEE-EEeeccccccccccccCChhHHHHhccC
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLEL-SYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (634)
+..++++++.+.+..|++++++.+++.+.+.++++.|+|++.++++..... .+++.........++.+.+.+++++.++
T Consensus 4 L~~L~~is~~l~~~~dl~~lL~~il~~l~~~l~a~~~~I~L~d~~~~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~~ 83 (534)
T TIGR01817 4 LAALYEISKILSAPTRLEKTLANVLNVLSNDLGMRHGLITLSDSEGEPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVATG 83 (534)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCEEEEEEECCCCCEEEEEEeCCChhhcccccccCCccHHHHHHhcC
Confidence 667999999999999999999999999999999999999999887765433 3333332223345667788999999999
Q ss_pred CeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCC-CCccchhhhHHHHHHH
Q 006706 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG-GRKWRDHELELIDVVA 300 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~-~~~~~~~e~~ll~~~a 300 (634)
+++.+++...+..+.........+..+.+++||. .++..+|++.+.+.. .+.|++++++++..+|
T Consensus 84 ~pvii~Dv~~d~~~~~~~~~~~~~~~S~l~VPL~--------------~~g~viGvL~v~s~~~~~~ft~~d~~lL~~lA 149 (534)
T TIGR01817 84 NSLVVPDVAAEPLFLDRLSLYDPGPVPFIGVPIK--------------ADSETIGVLAADRDFRSRERLEEEVRFLEMVA 149 (534)
T ss_pred CeEEecccccCchhhhccccccCCcceEEEEEEc--------------CCCEEEEEEEEEeccccccccHHHHHHHHHHH
Confidence 9999999888777643222234456788888874 344578999888764 5678999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006706 301 DQVAVALSHAAILED 315 (634)
Q Consensus 301 ~~~a~al~~a~l~~~ 315 (634)
.+++++|..++.+..
T Consensus 150 ~~ia~aI~~~~~~~~ 164 (534)
T TIGR01817 150 NLIGQTVRLHRLVAQ 164 (534)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987766543
No 73
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.83 E-value=4.3e-08 Score=89.01 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhc
Q 006706 457 EKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFT 532 (634)
Q Consensus 457 ~~~l~~vl~nLl~NAik~~~~----g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~ 532 (634)
...+..++.+++.||++|+.. +.+.+.+...++ .+.+.|+|+|.|++++..+..|.
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~--------------------~l~i~V~D~G~gfd~~~~~~~~~ 99 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED--------------------RLEIIVSDQGDSFDMDTFKQSLG 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC--------------------EEEEEEEEcccccCchhhccccC
Confidence 345888999999999999853 456666655433 39999999999999998888887
Q ss_pred cccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006706 533 KFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 533 ~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~ 588 (634)
++....... ...+.|+||++++++++ ++.+++. +|+++++...+...+
T Consensus 100 ~~~~~~~~~-~~~~~G~GL~Li~~L~D----~v~~~~~---~G~~l~l~k~~~~~~ 147 (159)
T TIGR01924 100 PYDGSEPID-DLREGGLGLFLIETLMD----EVEVYED---SGVTVAMTKYLNREQ 147 (159)
T ss_pred CCCCCCCcc-cCCCCccCHHHHHHhcc----EEEEEeC---CCEEEEEEEEEcccc
Confidence 766544332 22356999999999998 5666664 578888887765443
No 74
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=98.77 E-value=1.2e-07 Score=83.06 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=99.3
Q ss_pred ChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCCeEEcCCCCchhhhhh
Q 006706 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRL 237 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (634)
|++++++.+++.+.+.++++.++||+.++++..+....+++........++...+.+..++.+++++..++.....
T Consensus 1 dl~~l~~~i~~~l~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 76 (129)
T PF13492_consen 1 DLDELLERILELLRELLGADRAALFLLDEDGNRLRVVAGWGGDPRLSESLPEDDPLIGRALETGEPVSVPDIDERD---- 76 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-SEEEEEEEETTCECEEEEEEESS-GCGHHCEETTSHHHHHHHHHTS-EEESTCCC-T----
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCEEEEEEEeCCCccccccCCCCccHHHHHHhhCCeEEeccccccc----
Confidence 6789999999999999999999999999998888888887544333346778888999999999887776543321
Q ss_pred cccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 006706 238 LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSH 309 (634)
Q Consensus 238 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~ 309 (634)
..+....+.+||... +..+|++.+....+..|++++.++++.+|.+++++++|
T Consensus 77 -----~~~~~s~~~vPl~~~--------------~~~~Gvl~~~~~~~~~~~~~d~~~l~~~a~~~a~alen 129 (129)
T PF13492_consen 77 -----FLGIRSLLVVPLRSR--------------DRVIGVLCLDSREPEEFSDEDLQLLESLANQLAIALEN 129 (129)
T ss_dssp -----TTTTCEEEEEEEEET--------------TEEEEEEEEEECTTCG-SHHHHHHHHHHHHHHHHHHH-
T ss_pred -----CCCCCEEEEEEEeEC--------------CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 144566777886443 35688888888888899999999999999999999975
No 75
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=98.64 E-value=1.3e-06 Score=90.50 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=129.9
Q ss_pred HHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEE--EEEeeccccccccccccCChhHHHHhccCC
Q 006706 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLE--LSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (634)
Q Consensus 145 ~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (634)
.|+++-+.+.+.+++++-|+.+++++...+..+.|.||+.+.++..++ .+.+++........+..+.+.++-+-.+.+
T Consensus 4 ~Lr~i~E~va~~~~~qe~Ld~iVr~i~~aM~tEVCSvYl~~~d~~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~ae 83 (756)
T COG3605 4 RLRRIVEKVASALELQEALDIIVRDIALAMVTEVCSVYLLRADRRVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAE 83 (756)
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhhhhheeEEEEcCCCcEEEEEeccccCccccceEEecCCCchhhhhhhccC
Confidence 377888889999999999999999999999999999999999886544 466777666666677789999999999999
Q ss_pred eEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHH
Q 006706 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (634)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~ 302 (634)
|+.+.+.+..++|.+.....+..-++-+.+|+.+ ....+||+++.+...|.|.++|.+++.++|-|
T Consensus 84 PlNLsdAqsHPsF~Y~petgEE~Y~sFLGvPIi~--------------~~r~lGVLVVQqk~~R~y~E~Eve~L~T~A~~ 149 (756)
T COG3605 84 PLNLADAQSHPSFKYLPETGEERYHSFLGVPIIR--------------RGRLLGVLVVQQRELRQYDEDEVEFLVTLAMQ 149 (756)
T ss_pred CCChhhhhhCCccccccccchHHHHHhhccceee--------------cCceeEEEEEecccccccchHHHHHHHHHHHH
Confidence 9999999999999865544444444445555433 33469999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006706 303 VAVALSHAAIL 313 (634)
Q Consensus 303 ~a~al~~a~l~ 313 (634)
+|..+.++.+.
T Consensus 150 lA~iva~~el~ 160 (756)
T COG3605 150 LAEIVAQSQLT 160 (756)
T ss_pred HHHHHHhhhhh
Confidence 99999988876
No 76
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=98.61 E-value=2.2e-07 Score=84.12 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=104.1
Q ss_pred ChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccc--ccccccccCChhHHHHhccCCeEEcCCCCchhhh
Q 006706 158 DRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (634)
|++++++.+++.+.+.+++++|+|++.+.++..+......+... ......+...+.+.+++.+++++.+++......+
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 80 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGADRASIFLLDPDGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDVAADPRF 80 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTESEEEEEEEETTTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSSGGSTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEecCCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccccccccc
Confidence 67899999999999999999999999999999887776666443 2344555567889999999999998888766554
Q ss_pred hhcccc---------------cCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCC-CccchhhhHHHHHH
Q 006706 236 RLLVGR---------------YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVV 299 (634)
Q Consensus 236 ~~~~~~---------------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~~ 299 (634)
...... ...+..+.+.+|+. .++..+|++.+....+ +.|+++|+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~--------------~~g~~~G~l~l~~~~~~~~~~~~d~~ll~~~ 146 (154)
T PF01590_consen 81 APQIAAQSALRALSSAERPFLAEYGVRSYLCVPII--------------SGGRLIGVLSLYRTRPGRPFTEEDLALLESF 146 (154)
T ss_dssp SCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEE--------------ETTEEEEEEEEEEESSSSS--HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCceeeEeeee--------------cccCcEEEEEEEECCCCCCcCHHHHHHHHHH
Confidence 322111 13466777777753 3445688888888776 99999999999999
Q ss_pred HHHHHHHH
Q 006706 300 ADQVAVAL 307 (634)
Q Consensus 300 a~~~a~al 307 (634)
|.+++++|
T Consensus 147 a~~~a~ai 154 (154)
T PF01590_consen 147 AQQLAIAI 154 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999886
No 77
>PF14501 HATPase_c_5: GHKL domain
Probab=98.61 E-value=6.7e-07 Score=74.48 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~----g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...|..+|.||++||++++.. ..+.+.+...++ .+.|.|++.-.+ +. +.++
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~--------------------~~~i~i~N~~~~---~~-~~~~ 57 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREENG--------------------FLVIIIENSCEK---EI-EKLE 57 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC--------------------EEEEEEEECCCC---cc-cccc
Confidence 4567889999999999998753 234444444332 489999988544 11 2221
Q ss_pred ccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
+. .....+.|+||..+++++++++|++.++.+ +.=.++++.||
T Consensus 58 ----~~---~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~--~~~f~~~i~ip 100 (100)
T PF14501_consen 58 ----SS---SSKKKGHGIGLKNVKKILEKYNGSLSIESE--DGIFTVKIVIP 100 (100)
T ss_pred ----cc---ccCCCCCCcCHHHHHHHHHHCCCEEEEEEE--CCEEEEEEEEC
Confidence 11 122347899999999999999999999887 34445555554
No 78
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.60 E-value=1.9e-06 Score=97.50 Aligned_cols=172 Identities=10% Similarity=0.069 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccc---cccccccccCChhHHHHhc
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINLPIVTDVFN 219 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 219 (634)
...|.++++.+.+..|+.+++..+...+.+.+.++++.|.++|+....+.+ +..... ...........+..+.+++
T Consensus 8 ~~~l~~is~~~~~~~~~~~l~~~l~~~~~~~~~ad~~~i~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~vl~ 86 (686)
T PRK15429 8 QQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASY-YASREKGTPVKYEDETVLAHGPVRRILS 86 (686)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccceEEEEEEcCCCCeeee-eeccccccchhccchhhhccCcceEEee
Confidence 456889999999999999999999999999999999999999987766554 222211 1111233346777889999
Q ss_pred cCCeEEcCCCCchhhhhhc-ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHH
Q 006706 220 SAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 298 (634)
+++++..++..-..++... ....+++-.....+||.. ++.++|++++....+..|+++|.+++..
T Consensus 87 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~lgvPl~~--------------~~~v~G~l~l~~~~~~~Ft~~d~~ll~~ 152 (686)
T PRK15429 87 RPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMPLAA--------------EGHIFGGCEFIRYDDRPWSEKEFNRLQT 152 (686)
T ss_pred cCceEEEchHHhhhccHHHhhcccccCccceEEeceee--------------CCeeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence 9999988765544333211 223344445555566533 4456888888777789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 299 VADQVAVALSHAAILEDSMRARNQLMEQNVA 329 (634)
Q Consensus 299 ~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~ 329 (634)
+|.++++|+++++++++.++..+.|+++..+
T Consensus 153 la~~a~~aie~~~~~e~~~~~~~~L~~~r~~ 183 (686)
T PRK15429 153 FTQIVSVVTEQIQSRVVNNVDYELLCRERDN 183 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999888877777555444
No 79
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.49 E-value=6.8e-06 Score=89.57 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCCh-hHHHHhccC
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLP-IVTDVFNSA 221 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 221 (634)
+..++++++.|.+++|.+++|+.+++.+.+.++++.|+|.+++.+......+.+...... ....+.+.+ .+..++.++
T Consensus 3 ~~~l~eis~~L~~s~d~~e~L~~vl~~l~~~l~~~~~~l~l~~~~~l~~~as~gl~~~~~-~~~~~~geGP~l~av~~~g 81 (509)
T PRK05022 3 LDALLPIALDLSRGLPHQDRFQRLLTTLRQVLPCDASALLRLDGDQLVPLAIDGLSPDVL-GRRFALEEHPRLEAILRAG 81 (509)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCcEEEEEEcCCChHhh-CCccCCCcchHHHHHHhcC
Confidence 346899999999999999999999999999999999999988865333333333332221 224444443 678888778
Q ss_pred CeEEcCCCCchhhh-hhc-c-cccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHH
Q 006706 222 QAMRLPYNCPLARI-RLL-V-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (634)
Q Consensus 222 ~~~~l~~~~~~~~~-~~~-~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 298 (634)
.++.+++....+.+ ... . .....+.++.+++||.. ++..+|++.+....+..|++++.+++..
T Consensus 82 ~~v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~~--------------~~~~~GvL~l~~~~~~~f~~~~~~~l~~ 147 (509)
T PRK05022 82 DPVRFPADSELPDPYDGLIPGVQESLPVHDCMGLPLFV--------------DGRLIGALTLDALDPGQFDAFSDEELRA 147 (509)
T ss_pred CeEEEecCCCCCcccccccccccccCCcceEEEEEEEE--------------CCEEEEEEEEeeCCCCcCCHHHHHHHHH
Confidence 88888866544332 101 1 11223455778888643 4457999999888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 299 VADQVAVALSHAAILEDSMRARNQLM 324 (634)
Q Consensus 299 ~a~~~a~al~~a~l~~~~~~~~~~l~ 324 (634)
+|.+++.++.+++.+++.++..+++.
T Consensus 148 ~a~~~a~Al~~a~~~~~l~~~~~~~~ 173 (509)
T PRK05022 148 LAALAAATLRNALLIEQLESQAELPQ 173 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877665554443
No 80
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.37 E-value=2.7e-06 Score=74.12 Aligned_cols=93 Identities=27% Similarity=0.319 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+.-++.+++.||++|+..+ .+.+.+..... .+.++|.|+|.|+++.....-.
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~--------------------~l~i~v~D~G~~~d~~~~~~~~ 87 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD--------------------RLRISVRDNGPGFDPEQLPQPD 87 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC--------------------EEEEEEEECCCCCChhhccCcc
Confidence 44578889999999999999763 34444434333 3999999999999887543221
Q ss_pred ccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEE
Q 006706 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 581 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~ 581 (634)
..-. ......|+||.+++++++.. .+ + .++|++++++
T Consensus 88 ~~~~------~~~~~~G~Gl~li~~l~D~~----~~-~--~~~gn~v~l~ 124 (125)
T PF13581_consen 88 PWEP------DSLREGGRGLFLIRSLMDEV----DY-R--EDGGNTVTLR 124 (125)
T ss_pred cccC------CCCCCCCcCHHHHHHHHcEE----EE-E--CCCeEEEEEE
Confidence 1000 12235699999999999876 44 3 3679988875
No 81
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.30 E-value=4.5e-06 Score=63.02 Aligned_cols=63 Identities=44% Similarity=0.682 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLE 406 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~ 406 (634)
++++.+.++||+||||+.|.++++.+.+...+++...+++.+.+.++++..++++++++++.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 64 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIE 64 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999999888755566668899999999999999999999998864
No 82
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=98.30 E-value=1.5e-05 Score=70.31 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=97.3
Q ss_pred ChhHHHHHHHHHHHhhcCCceeEEEcccCC-CCeEEEEEeeccc-cccccccccCChhHHHHhccCCeEEcCCCCchhhh
Q 006706 158 DRHTILKTTLVELGRTLGLEECALWMPSRT-GLNLELSYTLNNQ-IQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (634)
|++++++.+++.+.+.+++++++|++.+++ ..........+.. ......++...+.+..++.+++++.+++.......
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (149)
T smart00065 1 DLEELLQTILEELRQLLGADRVLIYLVDEDDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVEADPVF 80 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEEEecCCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechhhCCcc
Confidence 467889999999999999999999999884 3333333332222 12334456666888899999988887765543311
Q ss_pred hhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 006706 236 RLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHAAILE 314 (634)
Q Consensus 236 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~ 314 (634)
.........+....+.+|+.. ++..+|++.+... .++.|+.++..++..++.+++.++++.++.+
T Consensus 81 ~~~~~~~~~~~~s~~~~Pl~~--------------~~~~~G~l~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~ 146 (149)
T smart00065 81 ALDLLGRYQGVRSFLAVPLVA--------------DGELVGVLALHNKDSPRPFTEEDEELLQALANQLAIALANAQLYE 146 (149)
T ss_pred ccccccceeceeeEEEeeeee--------------cCEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100011111145566666533 3345777777766 7889999999999999999999998887654
Q ss_pred H
Q 006706 315 D 315 (634)
Q Consensus 315 ~ 315 (634)
+
T Consensus 147 ~ 147 (149)
T smart00065 147 E 147 (149)
T ss_pred h
Confidence 3
No 83
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.22 E-value=7.8e-06 Score=82.54 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
-...|.+++.+|++|++++++.. .+.+.+...+.+ +.++.|.|||+|||+++++++|
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d-------------------~y~v~veDNGpGIP~e~IPkvF 93 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKD-------------------HYKVIVEDNGPGIPEEQIPKVF 93 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCc-------------------eEEEEEecCCCCCChhHhHHHH
Confidence 34569999999999999999753 345555544322 5899999999999999999999
Q ss_pred ccccccCCC--CCCC-CCccccHHHHHHHHHHhCCE-EEEEecCCCCceEEEEEEEecCCCCCC
Q 006706 532 TKFAQSRGS--SCQT-PRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTVTFLVKLGICNNPG 591 (634)
Q Consensus 532 ~~f~~~~~~--~~~~-~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt~f~i~lP~~~~~~~~ 591 (634)
-+++-+..- ...+ +-.|+|.+.|--..+..-|+ +.|.|...+.++.+.+.+-+......+
T Consensus 94 Gk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp 157 (538)
T COG1389 94 GKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEP 157 (538)
T ss_pred HHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcc
Confidence 766433221 1111 23589999888888888776 777776345589999999887666543
No 84
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=98.18 E-value=1.3e-05 Score=71.71 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=88.1
Q ss_pred cChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccc--cccCC---------hhHHHHhccCCeEE
Q 006706 157 LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSS--VPINL---------PIVTDVFNSAQAMR 225 (634)
Q Consensus 157 ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~ 225 (634)
.+++++++.+++.+.+..+++.++|++.|+++......+........... .+... +....++.+++++.
T Consensus 2 ~~~~ell~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T PF13185_consen 2 EDLEELLQQILDALLELTGADAGAIYLYDPDGQLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEGVLRTGEPII 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SEEEEEEEETTSEEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSHHHHHTS-EE
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCcEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHHHHhcCceEE
Confidence 36789999999999999999999999998887545555443332211111 22211 11122388888888
Q ss_pred cC-CCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHH
Q 006706 226 LP-YNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVA 304 (634)
Q Consensus 226 l~-~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a 304 (634)
++ +.... .........+..+.+.+||.. ++..+|++.+.+..+..|+++++++++.+|.+++
T Consensus 82 ~~~~~~~~---~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a 144 (148)
T PF13185_consen 82 INDDDSSF---PPWELARHPGIRSILCVPLRS--------------GGEVIGVLSLYSKEPNAFSEEDLELLEALADQIA 144 (148)
T ss_dssp ESCCCGGG---STTHHHCCTT-SEEEEEEEEE--------------TTEEEEEEEEEESSTT---HHHHHHHHHHHHHHH
T ss_pred EeCccccc---cchhhhccccCCEEEEEEEeE--------------CCEEEEEEEEeeCCCCCcCHHHHHHHHHHHHHHH
Confidence 88 12111 112344456777888888743 3357999999888888999999999999999999
Q ss_pred HHHH
Q 006706 305 VALS 308 (634)
Q Consensus 305 ~al~ 308 (634)
++|+
T Consensus 145 ~aie 148 (148)
T PF13185_consen 145 IAIE 148 (148)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9984
No 85
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=2.9e-05 Score=79.04 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhcccccc
Q 006706 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQS 537 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~ 537 (634)
..+.+++.||+.||+++.. ..+.+.+.. ++ ...|+|.|||.||++++++++|++|+++
T Consensus 21 ~~~~~~l~eLi~Na~dA~a-~~I~i~~~~--~~-------------------~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA-TRIDVEIEE--GG-------------------LKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC-CEEEEEEEe--CC-------------------EEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 3578999999999999754 555555432 22 2569999999999999999999999998
Q ss_pred CCCCC-------CCCCccccHHHHHHHHHHhCCEEEEEecC-CCCceEEEEE
Q 006706 538 RGSSC-------QTPRAGLGLAICRRFVNLMGGHIWLDSEG-LDKGSTVTFL 581 (634)
Q Consensus 538 ~~~~~-------~~~g~GlGL~i~k~iv~~~gG~i~v~s~~-~g~Gt~f~i~ 581 (634)
+.... ..+-.|.||+....+ +++++.|.. .+.+..+.+.
T Consensus 79 k~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 79 KIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred CCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 76431 111236677655433 368888862 1444444443
No 86
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=98.03 E-value=8e-05 Score=66.05 Aligned_cols=90 Identities=22% Similarity=0.322 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKE-----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~-----g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 530 (634)
+-..+.-++.+++.|+++|+.+ |.+.+.+....+ .+.+.|.|.|+|+ +..+..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~--------------------~~~i~i~D~G~~~--~~~~~~ 94 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDG--------------------KLEIRIWDQGPGI--EDLEES 94 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCC--------------------eEEEEEEeCCCCC--CCHHHh
Confidence 6778999999999999999866 666666666554 3999999999665 445666
Q ss_pred hccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCc
Q 006706 531 FTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKG 575 (634)
Q Consensus 531 f~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~G 575 (634)
+.|.+.+.+.. ...|+||.++++++. ++.+++. ++.+
T Consensus 95 ~~~~~~~~~~~---~~~G~Gl~l~~~~~D----~~~~~~~-~~~~ 131 (146)
T COG2172 95 LGPGDTTAEGL---QEGGLGLFLAKRLMD----EFSYERS-EDGR 131 (146)
T ss_pred cCCCCCCCccc---ccccccHHHHhhhhe----eEEEEec-cCCc
Confidence 66664443332 234999999998775 5788865 4443
No 87
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.89 E-value=8.6e-05 Score=55.49 Aligned_cols=61 Identities=38% Similarity=0.492 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSR 404 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~ 404 (634)
+.++...++||++||++.+.+.++.+.+.. ..++....++.+.+.+.++..++++++++++
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567889999999999999999999887653 2566678899999999999999999988763
No 88
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.74 E-value=0.00092 Score=69.25 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccc--cccccccCChhHHHHhcc
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINLPIVTDVFNS 220 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 220 (634)
.+.+++++..+....+.++++..+.+.+..+++++.+++..++.++.....+.+...... .........+.+.+++..
T Consensus 33 ~~~l~el~~~l~~~~~~e~ll~~v~~~l~~~~~~~~~~ll~~d~~~l~~~~~~gl~~~~~~~~~~~~~~~~~~l~~i~~~ 112 (550)
T COG3604 33 IRILVELTNALLSPLRLERLLAEVAKELHSLFGCDASALLRLDSKNLIPLATDGLSKDHLGREQRFVVEGHPLLEQILKA 112 (550)
T ss_pred hHHHHHhhhhhcCchhHHHHHHHHHHHHHHHhcCCeeEEEEecccccchhhhhcccccccccccccccCcchHHHHHHhC
Confidence 457888999999999999999999999999999999999999988855555555444322 123455678899999999
Q ss_pred CCeEEc-CCCCchhhhhhc---ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHH
Q 006706 221 AQAMRL-PYNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELI 296 (634)
Q Consensus 221 ~~~~~l-~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll 296 (634)
+.++++ +.++... -.+. ......+..+-+.+| +..|...+|++.+....+..|+..-.+.+
T Consensus 113 ~~p~~~~~~d~~~~-~~~~~l~~~~~~~~~~a~i~~P--------------L~~~~~~~G~Ltld~~~~~~f~~~~~~~l 177 (550)
T COG3604 113 GRPLVFHPADSLFP-DPYDGLLPDTEGNKKHACIGVP--------------LKSGDKLIGALTLDHTEPDQFDEDLDEEL 177 (550)
T ss_pred CCcEEEecCCcccC-CcccccccCccCCcceeEEeee--------------eeeCCeeeeeEEeeeecccccchhHHHHH
Confidence 999988 3333221 1111 112222345666666 44566679999998888878988888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 297 DVVADQVAVALSHAAILEDSMRARNQLMEQNVALDS 332 (634)
Q Consensus 297 ~~~a~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~ 332 (634)
..++..++.+..++.+.++..+.++.+.+++.+++.
T Consensus 178 r~La~~a~la~~~~~l~~~l~~~~~~l~~e~~~~~~ 213 (550)
T COG3604 178 RFLAALAALAVANALLHRELSSLKERLEEENLALEE 213 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999998888877777666555443
No 89
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.00015 Score=66.02 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCC--eEEEE---Eee-cccccccccc-ccCChhHH
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELS---YTL-NNQIQIGSSV-PINLPIVT 215 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~---~~~-~~~~~~~~~~-~~~~~~~~ 215 (634)
...+..+++.+....+.+++++.+++.+.+.++++++.|+..+.+.. ...+. ... .......... +.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (175)
T COG2203 3 EALLNELAAKIAQDLDLEEILQAALELLAELLGADRGLIYLLDEDGLLDGALVAEAAEAGLEQLIDELFGLVILPACLIG 82 (175)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccHHhhheeccccccchHHHHHHhcchhhhhHHHHhcccCcchhhhh
Confidence 34577888999999999999999999999999999999999887753 10000 000 0000000000 11222345
Q ss_pred HHhccCCeEEcCCCCchhhhhhcccccCCC-CceEEeeccccccCccccCCCcccccccEEEEEEecCCCCC-ccchhhh
Q 006706 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPP-DIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHEL 293 (634)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~ 293 (634)
.+...+.+..+.+......+.........+ ....+.+|+.. .+ ..+|++++....+. .|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~vPl~~-------------~~-~~~G~l~~~~~~~~~~~~~~e~ 148 (175)
T COG2203 83 IALREGRPVVVEDILQDPRFRDNPLVLLEPPIRSYLGVPLIA-------------QG-ELLGLLCVHDSEPRRQWSEEEL 148 (175)
T ss_pred hhhcCCceEEeeccccCcccccCHHHHHHHHHHHheeeeeeE-------------CC-EeeEEeeeeccCCCCCCCHHHH
Confidence 555666667766665554443211111111 34455555533 22 45667777666655 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006706 294 ELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 294 ~ll~~~a~~~a~al~~a~l~~~ 315 (634)
.++..++.++++++.+++++++
T Consensus 149 ~ll~~la~~~a~ai~~~~~~~~ 170 (175)
T COG2203 149 ELLEELAEQVAIAIERARLYEE 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887765
No 90
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=97.42 E-value=4.1e-05 Score=67.69 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCC
Q 006706 461 MQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540 (634)
Q Consensus 461 ~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 540 (634)
..++.+|+.||+++. ...+.|.+...+.+. ..|.|.|||.||+.+++..+|....+.+..
T Consensus 4 ~~al~ElI~Ns~DA~-a~~I~I~i~~~~~~~-------------------~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~ 63 (137)
T PF13589_consen 4 EDALRELIDNSIDAG-ATNIKISIDEDKKGE-------------------RYIVIEDNGEGMSREDLESFFRIGRSSKKS 63 (137)
T ss_dssp THHHHHHHHHHHHHH-HHHEEEEEEEETTTT-------------------TEEEEEESSS---HHHHHHHTTCHHTHHHH
T ss_pred HHHHHHHHHHHHHcc-CCEEEEEEEcCCCCC-------------------cEEEEEECCcCCCHHHHHHhccccCCCCCc
Confidence 468899999999854 345777776654221 579999999999999999988766665441
Q ss_pred ---CCCCCCcccc--HHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006706 541 ---SCQTPRAGLG--LAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 541 ---~~~~~g~GlG--L~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~ 584 (634)
....+..|+| +++. .++.++.+.|...+....+++..+.
T Consensus 64 ~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~ 107 (137)
T PF13589_consen 64 EKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDW 107 (137)
T ss_dssp HHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEE
T ss_pred hhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEec
Confidence 1112234666 3332 4688899999855556677766664
No 91
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.38 E-value=0.0007 Score=75.32 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccC
Q 006706 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+..++.+|+.||+++. +..+.|.+. .++ ...|+|.|||.||++++++.+|.++.+++
T Consensus 22 ~~~svvkElveNsiDAg-at~I~v~i~--~~g-------------------~~~i~V~DnG~Gi~~~~~~~~~~~~~tsK 79 (617)
T PRK00095 22 RPASVVKELVENALDAG-ATRIDIEIE--EGG-------------------LKLIRVRDNGCGISKEDLALALARHATSK 79 (617)
T ss_pred CHHHHHHHHHHHHHhCC-CCEEEEEEE--eCC-------------------eEEEEEEEcCCCCCHHHHHHHhhccCCCC
Confidence 46789999999999954 566666663 222 26899999999999999999999988776
Q ss_pred CCCC------CCCC-ccccHHHHHHHHHHhCCEEEEEec
Q 006706 539 GSSC------QTPR-AGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~~------~~~g-~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
-... .+.| .|-||+.+..+ .++++.|.
T Consensus 80 i~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~ 113 (617)
T PRK00095 80 IASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSR 113 (617)
T ss_pred CCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEe
Confidence 5431 1112 35666655443 46788876
No 92
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.24 E-value=0.014 Score=66.57 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecc-cccccccccc-CChhHHHHhcc--
Q 006706 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-QIQIGSSVPI-NLPIVTDVFNS-- 220 (634)
Q Consensus 145 ~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~-- 220 (634)
.+..+++.+....+.+++++.+++.+.+..+.+.++|+.+++++..+......+. ....+..+.. ..+....++.+
T Consensus 289 ll~~v~~~l~~~~~~~~l~~~v~~~l~~~~~~~~awi~~~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~p~~~a~~~~~ 368 (665)
T PRK13558 289 LVNDVTSALVRATDREEIEAAVCDRVGAGGEYDGAWIGEYDPTSGTITVAEAAGGCDGADGDVLDLAAAGPAAAALQSVV 368 (665)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhccCcceEEEeeecCCCCeEeeeecccCCcccccccccccccCchHHHHHhcc
Confidence 4667788888899999999999999999999999999999887776644322221 1111111111 12233444444
Q ss_pred CCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHH
Q 006706 221 AQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVA 300 (634)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a 300 (634)
+....+.+........ .....+.+.+|| ..++..+|++.+....++.|+++++.+++.+|
T Consensus 369 ~~~~~~~~~~~~~~~~------~~~~~s~~~vPL--------------~~~g~~~GvL~v~~~~~~~f~~~e~~ll~~la 428 (665)
T PRK13558 369 AETEAVESTDVDGVSG------TVDGSAVAAVPL--------------VYRETTYGVLVVYTAEPDEIDDRERVVLEALG 428 (665)
T ss_pred CceEEecCCCcccccc------ccCCceEEEEeE--------------EECCEEEEEEEEeeCCCCCCCHHHHHHHHHHH
Confidence 4444443222111000 000115566665 44556799999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006706 301 DQVAVALSHA 310 (634)
Q Consensus 301 ~~~a~al~~a 310 (634)
.+++.+|...
T Consensus 429 ~~ia~aI~~~ 438 (665)
T PRK13558 429 RAVGAAINAL 438 (665)
T ss_pred HHHHHHHHHH
Confidence 9999999544
No 93
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=96.32 E-value=0.0085 Score=66.65 Aligned_cols=101 Identities=19% Similarity=0.268 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh-----
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL----- 529 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~----- 529 (634)
+...+.+++.++++||++.+..| .-.|.+....++ .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg---------------------~I~V~DnGrGIP~~~~~~~~~~~ 92 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG---------------------SVSVRDNGRGIPVGIHPEEGKSG 92 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC---------------------cEEEEEcCCCCCcccccccCCcc
Confidence 45678999999999999976543 233333333221 589999999999998877
Q ss_pred ---hhccccccCCCCC----CCCC-ccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 530 ---LFTKFAQSRGSSC----QTPR-AGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 530 ---if~~f~~~~~~~~----~~~g-~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
+|.....+..-.+ .+.| .|.|++.+..+.+. +.+++. . .|..+...+.
T Consensus 93 ~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~V~s~-r-~g~~~~~~f~ 148 (631)
T PRK05559 93 VEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LEVEVK-R-DGKVYRQRFE 148 (631)
T ss_pred hheeeeeccccCccCCccccccCcccccchhhhhhheee----EEEEEE-e-CCeEEEEEEE
Confidence 7766433221111 1122 58999988877554 455554 2 2444455444
No 94
>PRK05218 heat shock protein 90; Provisional
Probab=96.03 E-value=0.011 Score=65.58 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCCCCChhhhhccccccC------------C-CCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 512 RVQVNDSGCGVPPQDIPLLFTKFAQSR------------G-SSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if~~f~~~~------------~-~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.|+|+|||.||+.+++...|....++. . ...-.+-.|+|+..|-.+ +-++.|.|.
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~v----a~~v~V~Sr 141 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMV----ADKVTVITR 141 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhc----cCEEEEEEc
Confidence 599999999999999887664333221 0 111122468888654333 345666665
No 95
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.0074 Score=67.03 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCC
Q 006706 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (634)
Q Consensus 460 l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (634)
-.-|+.+|+.||+++.. ..|.+....++ .-.|.|+|||+||++++++-.+.++.++|-
T Consensus 24 PaSVVKELVENSlDAGA---t~I~I~ve~gG-------------------~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI 81 (638)
T COG0323 24 PASVVKELVENSLDAGA---TRIDIEVEGGG-------------------LKLIRVRDNGSGIDKEDLPLALLRHATSKI 81 (638)
T ss_pred HHHHHHHHHhcccccCC---CEEEEEEccCC-------------------ccEEEEEECCCCCCHHHHHHHHhhhccccC
Confidence 45689999999997543 45555555544 135999999999999999999999998876
Q ss_pred CC
Q 006706 540 SS 541 (634)
Q Consensus 540 ~~ 541 (634)
..
T Consensus 82 ~~ 83 (638)
T COG0323 82 AS 83 (638)
T ss_pred Cc
Confidence 53
No 96
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=95.78 E-value=0.12 Score=40.10 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=58.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHH
Q 006706 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (634)
Q Consensus 351 isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (634)
++|.+||-|+.|.+++.+-.....+++.+..+..+...+..+..+-+.|.. .-....+++.+++++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~vh~~L~~---------~~~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALVHEQLYQ---------SEDLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCCCeecHHHHHHHHHHHH
Confidence 689999999999999998888777888888888888888888777666542 11334799999999998876
Q ss_pred HH
Q 006706 431 KP 432 (634)
Q Consensus 431 ~~ 432 (634)
..
T Consensus 73 ~~ 74 (76)
T PF07568_consen 73 RQ 74 (76)
T ss_pred HH
Confidence 53
No 97
>PRK14083 HSP90 family protein; Provisional
Probab=95.40 E-value=0.0078 Score=66.14 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCCC---------CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 462 QTILNIVGNAVKFTKE---------GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 462 ~vl~nLl~NAik~~~~---------g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
..+.+|+.||.++... +.|.+.+. ..+. -.|+|+|||.||+.+++.+.|
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~--------------------~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGG--------------------GTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCC--------------------cEEEEEeCCCCCCHHHHHHHH
Confidence 4678999999887532 24444442 2211 578999999999999988765
No 98
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=95.36 E-value=0.057 Score=60.20 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh-----
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL----- 529 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~----- 529 (634)
++.-|.+++.+|+.||++...+| .-.|.+....++ .|+|.|||+|||.+..+.
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h~~~ki~~ 92 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG---------------------SITVTDNGRGIPVDIHPKTGKPA 92 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC---------------------cEEEEEeCccccCCccCCCCCCc
Confidence 55678999999999999955444 233333333222 599999999999864332
Q ss_pred ---hhccccccCCCCC-----CCCCccccHHHHHHHHH
Q 006706 530 ---LFTKFAQSRGSSC-----QTPRAGLGLAICRRFVN 559 (634)
Q Consensus 530 ---if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~ 559 (634)
+|.....+..-.+ ..+-.|.|++.+..+-+
T Consensus 93 ~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 93 VEVVLTVLHAGGKFGGGGYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred hHHheeeecccCccCCCcccccCCccccchhhhhheec
Confidence 3433211111000 11125899988877766
No 99
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=95.27 E-value=1 Score=41.40 Aligned_cols=151 Identities=15% Similarity=0.228 Sum_probs=88.9
Q ss_pred HHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcc------c-CCCCeEEEEEeeccc-cc
Q 006706 131 REMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMP------S-RTGLNLELSYTLNNQ-IQ 202 (634)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~------~-~~~~~~~~~~~~~~~-~~ 202 (634)
|+...+.+..+-++.+-..+..+-+..++++....++.++..+++.+...++.. + .+...+.+-.+.+.- ..
T Consensus 9 rdi~~Ie~~R~GLe~Ii~as~~L~~~~sl~~fa~gvL~Ql~~Ll~~~~~~l~~~~~~~~~~~~~~~~~~VlaatG~f~~~ 88 (174)
T PF11849_consen 9 RDIRTIERNRQGLEKIIEASASLFQIRSLQEFASGVLTQLSALLGLEDDGLYCSVRSAFPDDSDDNEFRVLAATGRFESL 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCCCeEEEecccccCCCCCCCCEEEEEEeccchhh
Confidence 334445555555677778888888999999999999999999999998776661 1 111223333333221 11
Q ss_pred cccccc-cCC----hhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEE
Q 006706 203 IGSSVP-INL----PIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMV 277 (634)
Q Consensus 203 ~~~~~~-~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~v 277 (634)
.+..+. ... ..+.+++.++..+.-+ ....+. ++.....-.+
T Consensus 89 ~~~~~~~~~~~~i~~~~~~a~~~~~~~~~~------------------~~~~ly----------------~~~~~g~~~~ 134 (174)
T PF11849_consen 89 IGQPLDDLLPPEIRAALQQALSSKRSIFEE------------------DHFVLY----------------FPSSSGRESL 134 (174)
T ss_pred cCCcccccCCHHHHHHHHHHHHcCCeEecC------------------CeEEEE----------------EecCCCCEEE
Confidence 111110 111 2233444443332211 111111 1111122345
Q ss_pred EEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 278 LMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILEDSM 317 (634)
Q Consensus 278 l~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~ 317 (634)
+++... +..++.+.++++.++.+++++++|..++++..
T Consensus 135 iyl~~~--~~l~~~d~~LlevF~~Nvs~afdNv~L~~~l~ 172 (174)
T PF11849_consen 135 IYLEGD--RPLSETDRQLLEVFCNNVSIAFDNVSLNEELE 172 (174)
T ss_pred EEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 47999999999999999999999999987764
No 100
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=94.94 E-value=0.015 Score=64.78 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.1
Q ss_pred EEEEEEEcCCCCCCCChhhhh
Q 006706 511 LRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~~~if 531 (634)
..++|.|||+||+.+++.+-+
T Consensus 72 ~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 72 KTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred CEEEEEECCCCCCHHHHHHHh
Confidence 478999999999998865543
No 101
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.81 E-value=0.18 Score=56.64 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
++.-+.+++.+++.||++...+| ...|.+....++ .|+|.|||+|||.+.
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g---------------------~I~V~DnG~GIp~~~ 77 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG---------------------SVTVEDNGRGIPVDI 77 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC---------------------cEEEEEeCCCcCccc
Confidence 45678999999999999954444 233333333332 399999999999864
No 102
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.051 Score=58.69 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006706 464 ILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 464 l~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
+++||+||.++.. .+...|.+....+. =+++|+|||+||..+++.
T Consensus 32 LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~--------------------kTLtI~DNGIGMT~~Ev~ 91 (623)
T COG0326 32 LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN--------------------KTLTISDNGIGMTKDEVI 91 (623)
T ss_pred HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC--------------------CEEEEEeCCCCCCHHHHH
Confidence 6688999877531 12455555555443 379999999999987764
Q ss_pred h
Q 006706 529 L 529 (634)
Q Consensus 529 ~ 529 (634)
.
T Consensus 92 ~ 92 (623)
T COG0326 92 E 92 (623)
T ss_pred H
Confidence 3
No 103
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=94.25 E-value=0.14 Score=57.03 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhh---cCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC--------hh
Q 006706 460 LMQTILNIVGNAVK---FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD--------IP 528 (634)
Q Consensus 460 l~~vl~nLl~NAik---~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~--------~~ 528 (634)
..+++.++|+||++ +.....|.|.+. .++ .|+|.|||.|||.+. .+
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~a~~I~V~i~--~d~---------------------~I~V~DnGrGIp~~~h~~~g~~~~e 87 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGFASIIMVILH--QDQ---------------------SIEVFDNGRGMPVDIHPKEGVSAVE 87 (625)
T ss_pred cceeehhhhhcccchhhcCCCCEEEEEEe--CCC---------------------eEEEEecCCccCcccccccCCcHHH
Confidence 36788889999998 333444555542 222 589999999999987 66
Q ss_pred hhh-ccccccCCCCC---CCCC-ccccHHHHHHHHHH
Q 006706 529 LLF-TKFAQSRGSSC---QTPR-AGLGLAICRRFVNL 560 (634)
Q Consensus 529 ~if-~~f~~~~~~~~---~~~g-~GlGL~i~k~iv~~ 560 (634)
-+| ...-+++-... .+.| .|.|++.+..+.+.
T Consensus 88 ~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 88 VILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred HhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 666 33322222111 1122 58999988887774
No 104
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=94.12 E-value=0.46 Score=45.85 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhh----hhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeec
Q 006706 123 KNRADELDREMGL----ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN 198 (634)
Q Consensus 123 ~~~~~~l~~~~~~----~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~ 198 (634)
++..++++.+.+. .+..+.....+..++..+....++++++......+.+.++++.+.+++.++........ .
T Consensus 53 R~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~~~v~L~L~~~~~~~~~~~---~ 129 (225)
T PF04340_consen 53 RERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDVDAVRLRLFDDDAAPGPSL---T 129 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--SEEEEEEE-SS---SEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCeEEEEeeccccccccch---h
Confidence 3444444444443 33334445678888999999999999999999999999999999999987654421000 0
Q ss_pred cccccccccccCChhHHHH----hccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccE
Q 006706 199 NQIQIGSSVPINLPIVTDV----FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (634)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (634)
. .+.......... +..+.+..-+........-| .....+..+...+||. .+..
T Consensus 130 ~------~~~~~~~~~~~~~~~~l~~~~p~~G~~~~~~~~~lF--~~~~~~v~S~AlipL~---------------~~~~ 186 (225)
T PF04340_consen 130 D------HVWLSRDAFAQVFIDLLGLQQPYCGRLSEEEAALLF--GDEAAQVGSVALIPLG---------------SGRP 186 (225)
T ss_dssp ----------E-HHHHHHHHCCCHTT---CCCS--HHHHHHHH--HHCHCC-SEEEEEEEE---------------SSSE
T ss_pred h------cccccHHHHHHHHHHHhCCCCceeCCCCcchhHHhc--CCCCccccchheeecc---------------CCCc
Confidence 0 000000111111 11111111111111111111 1122334455555653 2335
Q ss_pred EEEEEecCCCCCccchh-hhHHHHHHHHHHHHHHH
Q 006706 275 VMVLMLPTDGGRKWRDH-ELELIDVVADQVAVALS 308 (634)
Q Consensus 275 ~~vl~~~~~~~~~~~~~-e~~ll~~~a~~~a~al~ 308 (634)
+|++++.+..+..|+++ ...+++.++..++.++.
T Consensus 187 ~G~LalGS~D~~rF~p~mgT~fL~~La~vv~~~L~ 221 (225)
T PF04340_consen 187 IGLLALGSRDPDRFQPDMGTDFLEQLAEVVSAALE 221 (225)
T ss_dssp EEEEEEEESSTTCCCSTTTTHHHHHHHHHHHHHGG
T ss_pred eEEEEecCCChhhCCCCccHHHHHHHHHHHHHHHh
Confidence 78888888887778766 68889999988887764
No 105
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.64 E-value=4.8 Score=35.63 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=104.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHH
Q 006706 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (634)
Q Consensus 347 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (634)
+.+.+.||+-.|..+|..-+++|.+...+++ .++.|..++...+. .++|+|+.-|.....-..+|-.+.=
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~addD---Am~LIrsSArnas~----rLqFaR~AFGAsgSag~~iDtgeae--- 87 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADDD---AMDLIRSSARNASV----RLQFARLAFGASGSAGASIDTGEAE--- 87 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccHH---HHHHHHHHhhhHHH----HHHHHHHHhcccccccccccchhHH---
Confidence 5667899999999999999999998766644 45566666655543 4567776544333222345544432
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCC
Q 006706 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVST 505 (634)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~-i~v~~~~~~~~~~~~~~~~~~~~~~~ 505 (634)
+..+..+....-+++.+.+... + .+.+. ..+.||+.-|...-+.|. +.+.+.....+
T Consensus 88 -k~A~~~~a~ekpe~~W~g~r~~---~--~Kn~v-kllLNl~lia~~aiPrGG~~~vtle~~e~d--------------- 145 (214)
T COG5385 88 -KAAQDFFANEKPELTWNGPRAI---L--PKNRV-KLLLNLFLIAYGAIPRGGSLVVTLENPETD--------------- 145 (214)
T ss_pred -HHHHHHHhccCCcccccCChhh---c--CcchH-HHHHHHHHHHcccCCCCCeeEEEeecCCcC---------------
Confidence 2222333333344544332221 2 23332 356677776666666654 34443332222
Q ss_pred CCceEEEEEEEEcCCCC--CCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006706 506 DGHFYLRVQVNDSGCGV--PPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 506 ~~~~~l~i~V~D~G~Gi--~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
-+|++.-.|+-+ +++.+ +-. +..+....-.+...-=+..--+++.-|++|.++.. +.-..|+-..
T Consensus 146 -----~rfsi~akG~m~Rvppk~l----el~-~G~~~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~--~e~iv~~A~v 212 (214)
T COG5385 146 -----ARFSIIAKGRMMRVPPKFL----ELH-SGEPPEEAVDAHSVQPYYTLLLAEEAGMTISVHAT--AERIVFTAWV 212 (214)
T ss_pred -----ceEEEEecCccccCCHHHH----hhh-cCCCccccCCCccccHHHHHHHHHHcCCeEEEEec--cceEEEEEec
Confidence 356666556533 33322 211 22211111123344455666788999999999987 4455555444
No 106
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=93.55 E-value=0.095 Score=58.14 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh--------hh
Q 006706 460 LMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP--------LL 530 (634)
Q Consensus 460 l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~--------~i 530 (634)
|.+++.+|+.||++....| ...|.+....++ .|+|.|||.|||.+..+ -+
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g---------------------~I~V~DnG~GIp~~~h~~~~~~~~e~v 60 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN---------------------SISVEDNGRGIPVEIHPKEKKYAPEVI 60 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC---------------------eEEEEEeCCceeCCccCcCCCCcHHHh
Confidence 3467789999999987443 223333333221 68999999999976543 23
Q ss_pred hccccccCCCCC-----CCCCccccHHHHHHHH
Q 006706 531 FTKFAQSRGSSC-----QTPRAGLGLAICRRFV 558 (634)
Q Consensus 531 f~~f~~~~~~~~-----~~~g~GlGL~i~k~iv 558 (634)
|.....+..-.+ ..+-.|.|++.+..+-
T Consensus 61 ~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 61 FTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred hhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 332222111110 1112588998877664
No 107
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=0.15 Score=43.69 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh
Q 006706 458 KRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL 529 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~ 529 (634)
..+.-+..+|+.||+||...|.+++.....+. .+.+.|++.-.+=...+.++
T Consensus 62 hsvgYl~NELiENAVKfra~geIvieasl~s~--------------------~f~~kvsN~vd~~t~~~f~~ 113 (184)
T COG5381 62 HSVGYLANELIENAVKFRATGEIVIEASLYSH--------------------KFIFKVSNIVDLPTTIDFEN 113 (184)
T ss_pred hhHHHHHHHHHHhhhcccCCCcEEEEEEeccc--------------------eEEEEecccCCCccHHHHHH
Confidence 34556788999999999999988888877654 37888887665544443333
No 108
>PTZ00130 heat shock protein 90; Provisional
Probab=93.25 E-value=0.088 Score=59.14 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.4
Q ss_pred EEEEEEcCCCCCCCChhh
Q 006706 512 RVQVNDSGCGVPPQDIPL 529 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~ 529 (634)
.|+|+|||.||+.+++..
T Consensus 136 tLtI~DnGIGMT~eEl~~ 153 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLIN 153 (814)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 689999999999987654
No 109
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=92.57 E-value=0.38 Score=54.34 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 458 KRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.-|.+++.++++||++-+-+| .-.|.+....++ .|+|.|||.|||.+.
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg---------------------sIsV~DnGrGIPvd~ 84 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG---------------------SVSVSDNGRGIPTDI 84 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEcCCC---------------------eEEEEEcCCcccCCc
Confidence 468999999999999955444 233333333222 689999999999873
No 110
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=92.37 E-value=5.9 Score=35.15 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcC-CceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCCeEEcCCCCchhhhhhcccc
Q 006706 163 LKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR 241 (634)
Q Consensus 163 l~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 241 (634)
+..+..-+.+.++ .+=+.+|+.+++...+ +.-.....-..++.+.+.++.+..+++..++.+....+- ...
T Consensus 37 lan~sall~~~l~~~nW~GFYl~~~~~LvL----gPFqG~~acv~I~~GkGVCg~A~~~~~t~~V~DV~~~~g----hia 108 (163)
T COG1956 37 LANASALLKERLPDVNWVGFYLLEGDELVL----GPFQGKVACVRIPFGKGVCGTAAATGETVRVDDVHAFPG----HIA 108 (163)
T ss_pred HHHHHHHHHhhccCCceEEEEEecCCeEEE----ecccCCcceEEeccCcchhHHHHhcCCeEEecccccCCC----ccc
Confidence 3333334444443 5567778877333222 111222445678889999999999999999998776442 123
Q ss_pred cCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHH
Q 006706 242 YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAV 305 (634)
Q Consensus 242 ~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~ 305 (634)
..+...+.+.+|+.. ++..+|++=..+..+..|++++...++.++..++-
T Consensus 109 CD~as~SEIVvPi~~--------------~g~~iGvlDiDS~~~~~Fd~~D~~~Le~~~~~l~~ 158 (163)
T COG1956 109 CDAASNSEIVVPIFK--------------DGKLIGVLDIDSPTPGRFDEEDEAGLEKLAALLEK 158 (163)
T ss_pred cccccCceEEEEEEE--------------CCEEEEEEecCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 335567788888744 45579999999999999999999999988876643
No 111
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=89.19 E-value=0.49 Score=50.21 Aligned_cols=58 Identities=22% Similarity=0.414 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCC
Q 006706 461 MQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS 540 (634)
Q Consensus 461 ~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 540 (634)
..++.+|+.|++++ +...|.+...+++- =.+.|+|||.||..++++-+.++|.++|-.
T Consensus 29 ~NAlKEliENSLDA---~ST~I~V~vk~GGL-------------------KLlQisDnG~GI~reDl~ilCeRftTSKL~ 86 (694)
T KOG1979|consen 29 VNALKELIENSLDA---NSTSIDVLVKDGGL-------------------KLLQISDNGSGIRREDLPILCERFTTSKLT 86 (694)
T ss_pred HHHHHHHHhccccC---CCceEEEEEecCCe-------------------EEEEEecCCCccchhhhHHHHHHhhhhhcc
Confidence 35788999999874 33455555555541 246788999999999999999999887654
No 112
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=88.99 E-value=6.4 Score=42.81 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=40.7
Q ss_pred HHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEee
Q 006706 151 HEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTL 197 (634)
Q Consensus 151 ~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~ 197 (634)
..+.+..++.+++..++++++++.|.|++.+|-.++|+..-.++...
T Consensus 140 ~~lq~a~~l~~l~~~~tqeVr~~tGfDRVMlYrF~~d~~G~VIAEak 186 (750)
T COG4251 140 NRLQSAANLRDLLSRTTQEVRRMTGFDRVMLYRFDEDGSGEVIAEAK 186 (750)
T ss_pred HHHhcCccHHHHHHHHHHHHHHhcCCceEEEEeecCCCCccEEeccc
Confidence 37889999999999999999999999999999999988765555443
No 113
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=88.60 E-value=20 Score=33.12 Aligned_cols=169 Identities=11% Similarity=0.097 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHHHHhhhcCCce
Q 006706 361 AIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLIKPVASCKKLS 440 (634)
Q Consensus 361 ~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 440 (634)
+|.+.+++|.++..+++. ..++.|.+++......++ |.|+--|.... -+.++..+.- +.++...+...++
T Consensus 3 AI~NGLELL~~~~~~~~~-~~~~LI~~Sa~~A~aRl~----F~RlAFGaag~-~~~i~~~e~~----~~~~~~~~~~r~~ 72 (182)
T PF10090_consen 3 AINNGLELLDDEGDPEMR-PAMELIRESARNASARLR----FFRLAFGAAGS-GQQIDLGEAR----SVLRGYFAGGRIT 72 (182)
T ss_pred chhhhHHHHcCCCCccch-HHHHHHHHHHHHHHHHHH----HHHHHcCCCCC-CCCCCHHHHH----HHHHHHHhCCceE
Confidence 567778888876553333 378888888888776655 33433232221 3456655543 3333344445555
Q ss_pred EEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcC
Q 006706 441 MTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSG 519 (634)
Q Consensus 441 ~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G 519 (634)
+....+.+. . ++. .-+++.|++-=+....+. |.+.|......++ ..+.|.=+|
T Consensus 73 l~W~~~~~~---~--~k~-~vklllnl~l~a~~alprGG~i~V~~~~~~~~--------------------~~~~v~a~G 126 (182)
T PF10090_consen 73 LDWQVERDL---L--PKP-EVKLLLNLLLCAEDALPRGGEITVSIEGSEGD--------------------GGWRVRAEG 126 (182)
T ss_pred EEccCcccc---C--CHH-HHHHHHHHHHHHHhhcCCCCEEEEEEeccCCC--------------------ceEEEEEec
Confidence 555443331 1 233 337888888877777775 4555554333332 467777777
Q ss_pred CCCC--CCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 520 CGVP--PQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 520 ~Gi~--~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
..+. ++... ++. .......-.....=.+....+++..|++|.++..
T Consensus 127 ~~~~~~~~~~~-~L~----g~~~~~~l~~~~VQ~~~~~~la~~~G~~l~~~~~ 174 (182)
T PF10090_consen 127 PRARLDPDLWA-ALA----GEDPEEDLDPRNVQFYLLPLLAREAGRRLSVEAT 174 (182)
T ss_pred cccCCCHHHHH-Hhc----CCCCCCCCCHHhHHHHHHHHHHHHcCCeEEEEec
Confidence 7543 33222 211 1111111123345567888999999999999886
No 114
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=88.14 E-value=2.7 Score=31.10 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006706 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTL 395 (634)
Q Consensus 347 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~l 395 (634)
.++..-||+.|-|+.|.|++++ ...++..+|++.+....+..+.+
T Consensus 15 ~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~l 59 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESEL 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999876 33556677777777766665443
No 115
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=86.54 E-value=0.86 Score=49.60 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCC
Q 006706 460 LMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRG 539 (634)
Q Consensus 460 l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 539 (634)
+.-++.+|+.|+++.. ...+.+...+-+ .=.|+|+|||.||++...+-+-.++++.+-
T Consensus 21 l~sAVKELvENSiDAG---AT~I~I~~kdyG-------------------~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi 78 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAG---ATAIDIKVKDYG-------------------SDSIEVSDNGSGISATDFEGLALKHTTSKI 78 (672)
T ss_pred HHHHHHHHHhcCcccC---CceeeEecCCCC-------------------cceEEEecCCCCCCccchhhhhhhhhhhcc
Confidence 4578999999999754 344444444322 136999999999999998887777777654
Q ss_pred C
Q 006706 540 S 540 (634)
Q Consensus 540 ~ 540 (634)
.
T Consensus 79 ~ 79 (672)
T KOG1978|consen 79 V 79 (672)
T ss_pred c
Confidence 4
No 116
>PLN03237 DNA topoisomerase 2; Provisional
Probab=85.96 E-value=1 Score=53.97 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhcC-CC---CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh-----
Q 006706 458 KRLMQTILNIVGNAVKFT-KE---GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP----- 528 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~-~~---g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~----- 528 (634)
.-|..+|.++|.||++.. .. ..+.|.+...+ -.|+|.|||.|||-+..+
T Consensus 76 pGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~----------------------gsIsV~DnGRGIPV~iH~~eg~~ 133 (1465)
T PLN03237 76 PGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQ----------------------NLISVYNNGDGVPVEIHQEEGVY 133 (1465)
T ss_pred chhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCC----------------------CEEEEEecCccccCCCCCCCCCc
Confidence 347788888888888875 32 33334333222 269999999999976432
Q ss_pred ---hhhccccccCCCCC-----CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 529 ---LLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 529 ---~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
-||....++..-.+ ..+-.|.|.++|.-+-+.+--++. . ...|-.|..++-
T Consensus 134 ~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Vev~---D-g~~gk~y~Q~f~ 192 (1465)
T PLN03237 134 VPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIETA---D-GKRQKKYKQVFS 192 (1465)
T ss_pred cceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEEEE---E-CCCCeEEEEEEe
Confidence 23433333211111 112358998888777665543332 1 124566666554
No 117
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=85.29 E-value=1.5 Score=52.66 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhcCC----CCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh----
Q 006706 458 KRLMQTILNIVGNAVKFTK----EGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP---- 528 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~----~g~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~---- 528 (634)
.-|.+++.++|.||++... .|. -.|.+....+. =.|+|.|||.|||-+..+
T Consensus 56 pGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~--------------------g~IsV~dnGrGIPv~~h~~~~~ 115 (1388)
T PTZ00108 56 PGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEEN--------------------GEISVYNDGEGIPVQIHKEHKI 115 (1388)
T ss_pred chhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccC--------------------CeEEEEecCCcccCCCCCCCCC
Confidence 3578888888888888654 222 33333333321 269999999999976432
Q ss_pred ----hhhccccccCCCCCC-----CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006706 529 ----LLFTKFAQSRGSSCQ-----TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 529 ----~if~~f~~~~~~~~~-----~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
-+|....++..-.+. .+-.|.|...|..+-+. +.++......|-.|..++--+
T Consensus 116 ~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~----f~Vev~r~~~gk~y~q~f~~G 177 (1388)
T PTZ00108 116 YVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTK----FTVECVDSKSGKKFKMTWTDN 177 (1388)
T ss_pred ccceEEEEEeeccccCCCCceeeecccccCCccccccccce----EEEEEEECCCCCEEEEEecCC
Confidence 234333332211111 11248888877766554 444443112366666666533
No 118
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=83.30 E-value=0.91 Score=50.67 Aligned_cols=48 Identities=29% Similarity=0.438 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
++.-|.+++.++|+||++-...| .|.|.+. .+ -.|+|.|||.|||.+.
T Consensus 31 ~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~--~d---------------------gsitV~DnGrGIPv~~ 81 (637)
T TIGR01058 31 DSKGLHHLVWEIVDNSVDEVLAGYADNITVTLH--KD---------------------NSITVQDDGRGIPTGI 81 (637)
T ss_pred CcchhheehhhhhcchhhhhhcCCCcEEEEEEc--CC---------------------CeEEEEECCCcccCcc
Confidence 45668889999999999865443 3333332 22 2689999999999753
No 119
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=81.08 E-value=2.3 Score=46.32 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccC
Q 006706 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.|.|++.+|+-|++++.. ..+.+.+... ...+.|.|+|.|+..+++..+-++|++.+
T Consensus 21 sla~~VeElv~NSiDA~A-t~V~v~V~~~----------------------t~sv~ViDdG~G~~rdDl~~lg~ry~TSK 77 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEA-TCVAVRVNME----------------------TFSVQVIDDGFGMGRDDLEKLGNRYFTSK 77 (1142)
T ss_pred HHHHHHHHHHhhccccCc-eEEEEEecCc----------------------eeEEEEEecCCCccHHHHHHHHhhhhhhh
Confidence 478999999999997543 3344443322 28899999999999999999999988754
No 120
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=80.83 E-value=1.1 Score=49.55 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCCCCChh-----------hhhccccccCCC----CCCCCCccccHHHHHHHHHHhC
Q 006706 512 RVQVNDSGCGVPPQDIP-----------LLFTKFAQSRGS----SCQTPRAGLGLAICRRFVNLMG 562 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~-----------~if~~f~~~~~~----~~~~~g~GlGL~i~k~iv~~~g 562 (634)
.++|.|||.|||-+..+ -+|........- ....+-.|.|.+.+..+-+.+-
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhhh
Confidence 58999999999976542 122211111110 0012246899988877766653
No 121
>PLN03128 DNA topoisomerase 2; Provisional
Probab=80.05 E-value=3 Score=49.61 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh-------
Q 006706 458 KRLMQTILNIVGNAVKFT-KEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP------- 528 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~-~~g~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~------- 528 (634)
.-|.+++.++|.||++.. .+|. -.+.+....++ =.|+|.|||.|||-+..+
T Consensus 51 pGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~d--------------------gsIsV~DnGrGIPv~ih~~~g~~~~ 110 (1135)
T PLN03128 51 PGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQ--------------------NTISVYNNGKGIPVEIHKEEGVYVP 110 (1135)
T ss_pred hhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCC--------------------CeEEEEecCccccCCCCCCCCCccc
Confidence 458888999999988876 2222 23333333211 269999999999976432
Q ss_pred -hhhccccccCCCCCC-----CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006706 529 -LLFTKFAQSRGSSCQ-----TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 529 -~if~~f~~~~~~~~~-----~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~ 584 (634)
-+|....++..-.+. .+-.|.|.+.|..+-+. +.++......|..|..++--
T Consensus 111 ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~----f~Vev~d~r~gk~y~q~f~~ 168 (1135)
T PLN03128 111 ELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE----FTVETADGNRGKKYKQVFTN 168 (1135)
T ss_pred eEEEEeeccccccCCccceeeccccCCCCeEEEeecCe----EEEEEEECCCCeEEEEEeCC
Confidence 233322222111111 11248887776655443 44443212346666666643
No 122
>PRK10963 hypothetical protein; Provisional
Probab=79.83 E-value=59 Score=31.21 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhhhc----hHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccC
Q 006706 123 KNRADELDREMGLILT----QEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSR 186 (634)
Q Consensus 123 ~~~~~~l~~~~~~~~~----~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~ 186 (634)
+++.++++.+..++-. .++..+.+..++..+....+.++++.... .+.+.++++.+++++.++
T Consensus 50 R~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~-~~~~~f~~~~v~l~L~~~ 116 (223)
T PRK10963 50 RNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH-RWARDLGLAGAKIRLFPD 116 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHcCCCceEEEEecc
Confidence 4455555555444333 33334567788888889999999999996 789999999999988764
No 123
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=78.47 E-value=20 Score=26.70 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDV 399 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~l 399 (634)
+.+++..+++.+.+.|+++...++.+... ..+++....++.+.+.+.....-+.++
T Consensus 2 R~rIAreLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~R~~ 59 (68)
T PF07730_consen 2 RRRIARELHDGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIRELLREALQELRRI 59 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999988888753 233455555555555555444444333
No 124
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=71.66 E-value=0.78 Score=52.16 Aligned_cols=50 Identities=30% Similarity=0.393 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCc-EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006706 457 EKRLMQTILNIVGNAVKFTKEGY-VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 457 ~~~l~~vl~nLl~NAik~~~~g~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
..-|.+++.++|+||++-.-.|. -.|.+....++ .++|+|||.|||-+..
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg---------------------sItV~DnGRGIPvd~h 177 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG---------------------SVEISDNGRGIPCDVS 177 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC---------------------eEEEEeCCcccccccc
Confidence 34567777888888888655443 22223222222 5899999999997543
No 125
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=71.42 E-value=1.1 Score=48.43 Aligned_cols=99 Identities=15% Similarity=0.293 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCC---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh-------
Q 006706 458 KRLMQTILNIVGNAVKFTKEG---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------- 527 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------- 527 (634)
.-|.+++.+.++||++-+-.| .+.|.+. .++ .++|.|||.|||-+..
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~--~d~---------------------sisV~DnGRGIPvdiH~~~~~~~ 91 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYADRIDVTLH--EDG---------------------SISVEDNGRGIPVDIHPKEKVSA 91 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCcEEEEEEc--CCC---------------------eEEEEECCCCCccccCCCCCCCc
Confidence 456677777777777755433 3444433 222 6899999999997763
Q ss_pred -hhhhccccccCCCCC-----CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006706 528 -PLLFTKFAQSRGSSC-----QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 528 -~~if~~f~~~~~~~~-----~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
+-+|...-....-+. ..+-.|.|.+.|..+-+ .+.++.. ..|..+...+.-+
T Consensus 92 vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~----~l~v~v~--r~gk~y~q~f~~G 149 (635)
T COG0187 92 VEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALST----WLEVEVK--RDGKIYRQRFERG 149 (635)
T ss_pred eEEEEEeeccCcccCCCccEeecCCCccceEEEecccc----eEEEEEE--ECCEEEEEEEeCC
Confidence 334433322111100 11134888877766544 3444443 2355555555433
No 126
>PRK05415 hypothetical protein; Provisional
Probab=67.28 E-value=94 Score=31.82 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHH--------HHHhhhhch---HHHhHHHHHHHHHH
Q 006706 85 VVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELD--------REMGLILTQ---EETGRHVRMLTHEI 153 (634)
Q Consensus 85 ~~~~~~k~~~a~vs~~ta~~l~~~~p~~l~~~s~~~~~~~~~~~l~--------~~~~~~~~~---~~~~~~l~~l~~~i 153 (634)
|+....-++.+++.++.+...++..-.+.+++..+.+...-.+-++ .-.+.+.+. .+.........+.+
T Consensus 98 wlg~~~~~~~~~~~~~~~~~~~rE~~~l~rL~~~~~~r~~a~~l~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~r~~~~~ 177 (341)
T PRK05415 98 WLGLGAAVVGALIVLAGLGIVVREWRRLRRLRQRAHLRDEARALLHSHDVGEARAFCEKLAKQAGIPQLHPALQRWQASL 177 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHhCCCcccHHHHHHHHhh
Confidence 4444455666666666667777877777777766554332111111 001111111 12233445555666
Q ss_pred hcccChhHHHHHHHHHHHhh
Q 006706 154 RSTLDRHTILKTTLVELGRT 173 (634)
Q Consensus 154 ~~~ld~~~il~~~~~~l~~~ 173 (634)
.+..|..+++.-.-+++...
T Consensus 178 ~~~~~~~e~l~L~e~~vl~~ 197 (341)
T PRK05415 178 HETHNDAELLRLYEREVLPP 197 (341)
T ss_pred cccCCHHHHHHHHHHHhhHH
Confidence 67777777776665555443
No 127
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=66.72 E-value=1.9 Score=41.61 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=0.0
Q ss_pred hhHHHHHh-hhHH----H---HHHHhhHHHHHHHHHHhcCCC
Q 006706 16 LLVRYQYI-SDIL----I---ALAYFSIPVELIYFVQKSAFF 49 (634)
Q Consensus 16 ~~~~~~~~-s~~~----i---~~a~~~ip~~~~~~~~~~~~~ 49 (634)
+|+|+.+| ||.. + .+|...|-+.++.|+.||+.+
T Consensus 36 il~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLL 77 (381)
T PF05297_consen 36 ILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLL 77 (381)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56677665 6643 2 233344455566666777743
No 128
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=65.78 E-value=56 Score=25.77 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHHHHHH
Q 006706 351 MNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREVIKLI 430 (634)
Q Consensus 351 isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~~~~~ 430 (634)
+.|.+||-++.+.+.+.+-.....+. .++.+.+......|...-+-+ . .-..+.++|.++++..+.-+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~--~~~~~~~~~Rl~ALa~a~~ll---~-------~~~~~~~~L~~lv~~~l~p~ 69 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARSAASV--EEFAEAFSGRLQALARAHDLL---S-------RSDWEGVSLRDLVEAELAPY 69 (83)
T ss_pred chhHHHHHHHHHHHHHHHHcccCCCH--HHHHHHHHHHHHHHHHHHHHH---h-------cCCCCCccHHHHHHHHHHhc
Confidence 67999999999999998876653333 233344444443333332221 1 22345789999998888766
Q ss_pred H
Q 006706 431 K 431 (634)
Q Consensus 431 ~ 431 (634)
.
T Consensus 70 ~ 70 (83)
T PF07536_consen 70 G 70 (83)
T ss_pred c
Confidence 5
No 129
>COG5393 Predicted membrane protein [Function unknown]
Probab=65.47 E-value=80 Score=26.38 Aligned_cols=52 Identities=8% Similarity=0.184 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHhhhHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 51 YRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHI 108 (634)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~~a~vs~~ta~~l~~~ 108 (634)
+-..-++|++|.+..- -++.+|.+| |.|++...+-...++..++.+...|++
T Consensus 53 m~gLtl~fa~~~lmsL--~vLvi~~f~----~tyRl~a~~a~~~vl~vl~~i~ciW~l 104 (131)
T COG5393 53 MAGLTLLFAAFGLMSL--MVLVIWAFD----PTYRLNAMIATTAVLLVLALIGCIWTL 104 (131)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554331 145567787 455554555555666666667778883
No 130
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=63.89 E-value=1.4e+02 Score=29.70 Aligned_cols=112 Identities=11% Similarity=-0.002 Sum_probs=54.6
Q ss_pred HHHHHHHhhhHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHH-------
Q 006706 58 FGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELD------- 130 (634)
Q Consensus 58 ~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~~a~vs~~ta~~l~~~~p~~l~~~s~~~~~~~~~~~l~------- 130 (634)
++.|.++.|.--.-.+...|.-+. |+-...-++.+++.++.....++..-.+.+++..+.+.+.-.+-++
T Consensus 22 ~~l~~~~~~~~~~~~i~~~~~~~~---wLg~~~~~l~~~~~l~~~~~~~rE~~~l~RL~~~~~~r~~a~~ll~~~~~~~a 98 (289)
T TIGR01620 22 GVLFGLAFVLQAVQWIRNLFQRSD---WLGLTATIALIVIIFAGLALVGREWRRLMRLNARQSLKADAETASLDKSPKPG 98 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHH
Confidence 333444444443344444443222 3433445555656666666677777777777666554322111110
Q ss_pred -----HHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHh
Q 006706 131 -----REMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGR 172 (634)
Q Consensus 131 -----~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~ 172 (634)
+.......+.+.........+.+.+..|.++++.-.-+++-.
T Consensus 99 ~~~~~~~~a~~~~~~~~~~~~~r~~~~~~~~~d~~ell~L~e~~vL~ 145 (289)
T TIGR01620 99 RAIVCRLNAVLSGRAETAPGRAAWKETENEVIDGPELIELAEREVLV 145 (289)
T ss_pred HHHHHHHHHHhcCCccccHHHHHHHHhccccCCHHHHHHHHHHHhch
Confidence 001111111222334556666667777777777666555443
No 131
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=62.99 E-value=62 Score=31.19 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=44.8
Q ss_pred hHHHHHhhhHHHHHHH---hhHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHhh-hHHHhHHHhcccchhHHHHHHHHH
Q 006706 17 LVRYQYISDILIALAY---FSIPVELIYFVQKSA--FFPYRWVLMQFGSFIILCG-LTHFISLWTFTVHSKAVAVVMTIA 90 (634)
Q Consensus 17 ~~~~~~~s~~~i~~a~---~~ip~~~~~~~~~~~--~~~~~~~~~~~~~f~~~cg-~~h~~~~~~~~~~~~~~~~~~~~~ 90 (634)
.+|.|..+|.....+- |.+|+.++++..-.. -++=.|.+.+|..+. +|| .-.+..=+++...+++..+.+++.
T Consensus 103 ~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~l-a~~~~~~F~i~f~~~~~aFwt~~as~l~ 181 (268)
T COG4587 103 YLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLAL-ALLFLLRFLIQFTFGLFAFWTERASSLG 181 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccchhhHH
Confidence 6799999999998886 788888888875442 234444454444433 344 222222233322333334455555
Q ss_pred HHHHHHHH
Q 006706 91 KMACAFVS 98 (634)
Q Consensus 91 k~~~a~vs 98 (634)
|..=.++.
T Consensus 182 ~~~~~l~~ 189 (268)
T COG4587 182 KFWWLLYA 189 (268)
T ss_pred HHHHHHHH
Confidence 55444333
No 132
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.34 E-value=76 Score=29.78 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhhhchHHH----hHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccC
Q 006706 123 KNRADELDREMGLILTQEET----GRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSR 186 (634)
Q Consensus 123 ~~~~~~l~~~~~~~~~~~~~----~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~ 186 (634)
++...+++.+...+....+. ...+..++..+....+++++++++-+..++-++.+.+.|.+..+
T Consensus 51 R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l~~a~l~L~~~ 118 (218)
T COG3159 51 RNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGLAAASLRLFQD 118 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCCCceEEEEech
Confidence 44555565555544443333 33477888889999999999999999999999999888877654
No 133
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.70 E-value=2.2e+02 Score=29.08 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (634)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~ 403 (634)
-.+.+++..+.++.....++|+-+. |..+...++.++.. .+++..+.++.+++...+....+.++-.+.
T Consensus 23 Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 23 YKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3444555556677888888888775 34444444444433 455677788888888888887777776543
No 134
>COG4377 Predicted membrane protein [Function unknown]
Probab=58.54 E-value=25 Score=32.40 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 006706 28 IALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILC 65 (634)
Q Consensus 28 i~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~c 65 (634)
.|+|+..+|+..+++.+|+-++..+-+++--.+|.++.
T Consensus 14 ~aiall~~pIG~i~w~krky~~~l~v~g~GA~~Ffvf~ 51 (258)
T COG4377 14 TAIALLAFPIGSIWWAKRKYQINLAVLGLGAVAFFVFS 51 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 37889999999999999998888777777666666644
No 135
>PRK10263 DNA translocase FtsK; Provisional
Probab=54.50 E-value=1e+02 Score=37.31 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=10.7
Q ss_pred HHHHHHHhhHHHHHHH
Q 006706 26 ILIALAYFSIPVELIY 41 (634)
Q Consensus 26 ~~i~~a~~~ip~~~~~ 41 (634)
.+++++.|.||+.+++
T Consensus 77 ~LFGl~AYLLP~LL~~ 92 (1355)
T PRK10263 77 FIFGVMAYTIPVIIVG 92 (1355)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3556678888876643
No 136
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=53.91 E-value=16 Score=27.07 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=31.8
Q ss_pred cCCCCceEEeeccccccCcc--------ccCCCcccccccEEEEEEecCCCCCccchh
Q 006706 242 YVPPDIVAVRVPLLHLSNFQ--------INDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (634)
Q Consensus 242 ~~~~~~~~~~~pl~~~~~~~--------~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 291 (634)
+..+....+++.|.+.++-| ...|++|++|.|.+.|.+....+ .|+..
T Consensus 2 y~~~~~~~Y~Y~l~g~d~~W~~~~~~~~~~~~~~L~~G~Y~l~V~a~~~~~--~~~~~ 57 (66)
T PF07495_consen 2 YSNPENIRYRYRLEGFDDEWITLGSYSNSISYTNLPPGKYTLEVRAKDNNG--KWSSD 57 (66)
T ss_dssp TTCCTTEEEEEEEETTESSEEEESSTS-EEEEES--SEEEEEEEEEEETTS---B-SS
T ss_pred CCCCCceEEEEEEECCCCeEEECCCCcEEEEEEeCCCEEEEEEEEEECCCC--CcCcc
Confidence 34566777788776665432 34688999999999999988877 45544
No 137
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=51.31 E-value=81 Score=32.21 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=11.3
Q ss_pred HhhHHHHHHHHHHhcCCCchhH
Q 006706 32 YFSIPVELIYFVQKSAFFPYRW 53 (634)
Q Consensus 32 ~~~ip~~~~~~~~~~~~~~~~~ 53 (634)
.+.|-+-.+||=+...|.|--+
T Consensus 167 ~L~ig~walf~Rk~~A~mPRvf 188 (531)
T KOG3814|consen 167 ILLIGIWALFFRKAMADMPRVF 188 (531)
T ss_pred HHHHHHHHHHhhhhhccCchhH
Confidence 3444444455444556887333
No 138
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=50.44 E-value=1.3e+02 Score=23.98 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHhhhhchHHH-hHHHHHHHHHHh
Q 006706 99 CITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEET-GRHVRMLTHEIR 154 (634)
Q Consensus 99 ~~ta~~l~~~~p~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~l~~~i~ 154 (634)
++.+++.+.+++-+..+...-.........++++...+..+-.. ....+.+...+.
T Consensus 8 iaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 8 IAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555554333333333444444444443333222 233444444443
No 139
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=49.87 E-value=21 Score=40.23 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHHHHHHhh-cCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006706 455 GDEKRLMQTILNIVGNAVK-FTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik-~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
+-..-|.+|+.+++.||.. -..++--++.+...... -.++|.|||.|||-+..
T Consensus 49 t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~--------------------~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEK--------------------NEISVYNNGKGIPVTIH 102 (842)
T ss_pred ecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCC--------------------CEEEEEeCCCcceeeec
Confidence 3444589999999999998 33344444444443333 47999999999986543
No 140
>PF15449 Retinal: Retinal protein
Probab=48.12 E-value=4.2e+02 Score=31.44 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhh
Q 006706 455 GDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (634)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 530 (634)
+-..+|.++|..|=.-|..|...+. .+ .-+.-+|.|+|.+.|-+...
T Consensus 322 ~~de~llr~l~~le~~a~g~~~p~~---------~~--------------------~~L~SEDSGiGadneS~~~~ 368 (1287)
T PF15449_consen 322 GVDERLLRALGQLESLASGHGDPGV---------QD--------------------LPLCSEDSGIGADNESVQSV 368 (1287)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCC---------CC--------------------CccccccccCCccchhhhhh
Confidence 3456788888888888887776651 11 45566889999887765544
No 141
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=47.95 E-value=1e+02 Score=22.86 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=34.5
Q ss_pred cCCCchhHHHHHHHHHHHHhhhHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 46 SAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM 104 (634)
Q Consensus 46 ~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~~a~vs~~ta~~ 104 (634)
.++.........+|.+.++.|..++...+.-.... +. .....+.+++++..++.
T Consensus 16 ~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~-~~----~~~~l~~gi~~i~~Gi~ 69 (72)
T PF03729_consen 16 NPDASLAALAIILGIWLIISGIFQLISAFRRRKGS-KG----WWWSLLSGILSIVLGII 69 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-hh----hHHHHHHHHHHHHHHHH
Confidence 33445667788899999999999999888822211 11 12345556666655544
No 142
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=46.85 E-value=1.6e+02 Score=26.66 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhhchHH
Q 006706 120 LFLKNRADELDREMGLILTQEE 141 (634)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~ 141 (634)
--.+++.+.|++++++++++.+
T Consensus 155 ~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 155 ASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc
Confidence 4466678888888888877654
No 143
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=46.11 E-value=2.5e+02 Score=26.03 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=16.7
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHHhcCC
Q 006706 19 RYQYISDILIALAYFSIPVELIYFVQKSAF 48 (634)
Q Consensus 19 ~~~~~s~~~i~~a~~~ip~~~~~~~~~~~~ 48 (634)
++++++.+++.+..|.+-++-+=++ |-+|
T Consensus 4 i~eiI~~vLLliG~~f~ligaIGLl-RfPD 32 (197)
T PRK12585 4 IIEIIISIMILIGGLLSILAAIGVI-RLPD 32 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence 3467777777766665555544433 3444
No 144
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=46.03 E-value=40 Score=28.18 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHhcCCC
Q 006706 33 FSIPVELIYFVQKSAFF 49 (634)
Q Consensus 33 ~~ip~~~~~~~~~~~~~ 49 (634)
-+|+..++.+..|+.|+
T Consensus 71 ~~~s~~lLI~WYR~gdl 87 (118)
T PF10856_consen 71 ICISAILLIFWYRQGDL 87 (118)
T ss_pred HHHHHHhheeehhcCCC
Confidence 33444444444444443
No 145
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=44.08 E-value=1.7e+02 Score=33.05 Aligned_cols=171 Identities=8% Similarity=0.072 Sum_probs=98.1
Q ss_pred HHHhHHHHHHHHHHhc-ccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEE-Ee------eccccccc----ccc
Q 006706 140 EETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YT------LNNQIQIG----SSV 207 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~------~~~~~~~~----~~~ 207 (634)
.++...+..+...+-. -.+....+..++-.+...+.+.+|.+.+++......... .. ...+.... ...
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (707)
T KOG3689|consen 163 RKRNQVLLDLADLMFEEQTDRESIFPKILYTARSLLQCTRCSIQLLDMSTLEEFSWVLDVLETEQTKPSTSDMAEIEFKK 242 (707)
T ss_pred HHHHHHHhhhhhHHHHHhcchhcccchhhhhhhhhhhhcccceeeeccccchhhhhhhHHHhhhhcCCCCchhhhHHHHh
Confidence 3333444444433332 345555666666666667788899998887654432110 00 01111101 111
Q ss_pred ccCChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCc
Q 006706 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRK 287 (634)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~ 287 (634)
.++-...+.+-.++....+++......+.........+....+++|+... .+...+....++...+..
T Consensus 243 ~ld~~l~g~va~t~~~~ni~~~~~~~~f~~q~d~~~~~~~~il~~pi~~~------------~~~~igv~~~~nk~~g~~ 310 (707)
T KOG3689|consen 243 LLDYGLRGYVASTGEGLNISNAIADPRFDKQVDEDGTGIRPILCIPIKNK------------KGEVIGVQQLVNKEDGNP 310 (707)
T ss_pred hhhhhhhheeecccCcCCCCCccccccccccccccccccceeEEEecccc------------cCceecceeeeccccCCc
Confidence 12334445566667777777777666666443323344444677776443 122233334456566667
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 288 WRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (634)
Q Consensus 288 ~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~ 322 (634)
|+..+..+.+..+-.++..+.++..+......+.+
T Consensus 311 f~~~de~~~~~~~~~~gl~i~~~~~y~~~~~s~~r 345 (707)
T KOG3689|consen 311 FSRNDEDLFEAFTIFCGLSIHNTHMYSKINKSEPR 345 (707)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhHHHHhhhccc
Confidence 99999999999999999999999988876665543
No 146
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=44.00 E-value=2.3e+02 Score=25.11 Aligned_cols=43 Identities=16% Similarity=0.371 Sum_probs=28.7
Q ss_pred HHHhhhHHHHHHHhhHHHHHHHH-HHhcCCCchhHHHHHHHHHH
Q 006706 20 YQYISDILIALAYFSIPVELIYF-VQKSAFFPYRWVLMQFGSFI 62 (634)
Q Consensus 20 ~~~~s~~~i~~a~~~ip~~~~~~-~~~~~~~~~~~~~~~~~~f~ 62 (634)
.....+.+++++++.-.+.+.+. .+||+.+|...++++....+
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~~~I~~ll~~v~ 97 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPKLYIIWLLISVL 97 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 34557777777776666666664 45556788888877665555
No 147
>PF10966 DUF2768: Protein of unknown function (DUF2768); InterPro: IPR020076 This entry contains proteins with no known function.
Probab=43.52 E-value=78 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhc-CCCchhHHHHHHHH
Q 006706 26 ILIALAYFSIPVELIYFVQKS-AFFPYRWVLMQFGS 60 (634)
Q Consensus 26 ~~i~~a~~~ip~~~~~~~~~~-~~~~~~~~~~~~~~ 60 (634)
.+.++....|.+.++||.|.+ +.--++++..+++.
T Consensus 5 S~~~iglMfisv~~i~~sR~Klk~~~lk~i~~~vAy 40 (58)
T PF10966_consen 5 SFGAIGLMFISVILIYFSRYKLKGKFLKFIVSLVAY 40 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 356778888999999999865 43356776664444
No 148
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=40.74 E-value=1.9e+02 Score=23.10 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006706 89 IAKMACAFVSCITALMLVH 107 (634)
Q Consensus 89 ~~k~~~a~vs~~ta~~l~~ 107 (634)
++.+++|+++++.+++.|+
T Consensus 6 iv~~~~~v~~~i~~y~~~k 24 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWK 24 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777
No 149
>COG3462 Predicted membrane protein [Function unknown]
Probab=40.46 E-value=2.1e+02 Score=23.65 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhhhHHHhHH-Hhcccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccH
Q 006706 51 YRWVLMQFGSFIILCGLTHFISL-WTFTVHSK----AVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTR 118 (634)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~h~~~~-~~~~~~~~----~~~~~~~~~k~~~a~vs~~ta~~l~~~~p~~l~~~s~ 118 (634)
|-|++.-+.+.|...|+...... +++|...| +.+.-..++--+.+++|++..+.....+-....-++.
T Consensus 8 ~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG~yGm~lImpI~~~vvli~lvvfm~~~~g~~r~~~~ 80 (117)
T COG3462 8 FAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGGLYGMWLIMPIFWAVVLIFLVVFMFYILGAVRRGSD 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 55666655555555554443332 24443333 1111122555666667766666555555555555553
No 150
>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=40.12 E-value=1.4e+02 Score=28.72 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=26.6
Q ss_pred HhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhH
Q 006706 32 YFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLT 68 (634)
Q Consensus 32 ~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~ 68 (634)
++.+|+.++++.+||+....+..++-..+|+++....
T Consensus 2 ~~~~pi~l~~~~rk~~~~~~~~f~~Ga~~F~v~~~vl 38 (223)
T PF10086_consen 2 SILLPILLFIYFRKRKKISWKPFILGALVFFVFAQVL 38 (223)
T ss_pred eehHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4678999888888887766666666666677666543
No 151
>COG4708 Predicted membrane protein [Function unknown]
Probab=39.84 E-value=1.5e+02 Score=25.85 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=27.9
Q ss_pred hHHHHHHHhhHHHHH--HHHHHhcCCCchhHHHHH-HHHHHHHhhhHHHhHHH
Q 006706 25 DILIALAYFSIPVEL--IYFVQKSAFFPYRWVLMQ-FGSFIILCGLTHFISLW 74 (634)
Q Consensus 25 ~~~i~~a~~~ip~~~--~~~~~~~~~~~~~~~~~~-~~~f~~~cg~~h~~~~~ 74 (634)
|.+.+..--.|-+.| ++|.+..||.-|+.++-- |..|.++.-.+-+..+|
T Consensus 74 Dv~~G~~sT~I~l~Lgv~~f~ky~Kdy~~ngi~~k~~i~~~i~fsism~~ia~ 126 (169)
T COG4708 74 DVFVGGLSTLIFLSLGVILFSKYSKDYLFNGIINKAFIFFSILFSISMFIIAM 126 (169)
T ss_pred HHHhccHHHHHHHHHHHHhhhhhhhhhhhcccchhhhhhccHHHHHHHHHHHH
Confidence 334443333344444 899999999877666554 44444444444444443
No 152
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.79 E-value=1.4e+02 Score=22.14 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=5.4
Q ss_pred HHHHHHHhhhhch
Q 006706 127 DELDREMGLILTQ 139 (634)
Q Consensus 127 ~~l~~~~~~~~~~ 139 (634)
.+++++.+.++++
T Consensus 51 ~~~~k~l~~le~e 63 (68)
T PF06305_consen 51 RRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 153
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=39.77 E-value=2.5e+02 Score=31.66 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=31.5
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHH
Q 006706 18 VRYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISL 73 (634)
Q Consensus 18 ~~~~~~s~~~i~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~ 73 (634)
..++.=+++.-++|+..+|+.+++..+..+.=..+.++. .+....+-+.||++..
T Consensus 69 ~~~y~rgni~e~lA~~llPlvll~~~~~~~~~~~r~~~~-lAl~~all~lsHll~~ 123 (616)
T PF10131_consen 69 RNIYWRGNIPETLAFALLPLVLLFLYRFIKKRKYRYWIL-LALSMALLALSHLLST 123 (616)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHhHHHH
Confidence 345555788888899999998765544221112444444 3334444556785443
No 154
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=39.15 E-value=3.1e+02 Score=25.20 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=23.6
Q ss_pred cccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHH
Q 006706 271 KSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAA 311 (634)
Q Consensus 271 ~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~ 311 (634)
|+..+|.+++... ...|+++|+-+.+-.|..++.-+.++.
T Consensus 118 ~GeRLGTLvl~r~-~~~F~ddDLILaEY~ATVVGmEiLr~~ 157 (177)
T PF06018_consen 118 GGERLGTLVLARF-DKEFTDDDLILAEYGATVVGMEILRSK 157 (177)
T ss_dssp TTEEEEEEEEEES-S----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEEc-CCCCChhhhHHHHHHHHHHHHHHHHHH
Confidence 3334555555543 238999999888888887777765443
No 155
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=37.69 E-value=2.6e+02 Score=23.82 Aligned_cols=51 Identities=25% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHHHhcccchh
Q 006706 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSK 81 (634)
Q Consensus 29 ~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~ 81 (634)
+-.|+.+-+.+++...+-+. .+..+...+.++...|...++.++.-..|..
T Consensus 51 ~G~~~g~Gl~~l~~~~~~~~--~~~al~~l~~~~~~~~lgRlis~~~dG~p~~ 101 (124)
T PF14248_consen 51 GGLYLGLGLLLLWAAFKPEY--RRPALRLLALFIGGGGLGRLISLALDGPPSP 101 (124)
T ss_pred HHHHHHHHHHHHHHHccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 44567777777776665443 4456666778889999999999999877654
No 156
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=37.53 E-value=4.5e+02 Score=26.58 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 324 MEQNVALDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-----DLTPEQRVMIETVLKSSNLLTTLVDD 398 (634)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~ 398 (634)
.+.++.++...+.+.+.-.++.+=...+..|+...++....+.+.-+.. ..-...+.++..+...++.+..-+.+
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444455556666555555554444432 22233456788888888888888888
Q ss_pred HHHHHh
Q 006706 399 VLDLSR 404 (634)
Q Consensus 399 ll~~~~ 404 (634)
++++..
T Consensus 220 LLQle~ 225 (401)
T PF06785_consen 220 LLQLES 225 (401)
T ss_pred HHHhhh
Confidence 877764
No 157
>PF05449 DUF754: Protein of unknown function (DUF754); InterPro: IPR008473 This entry is represented by Bacteriophage D3, Orf90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.40 E-value=1.7e+02 Score=23.10 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HhhhHH
Q 006706 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFII-LCGLTH 69 (634)
Q Consensus 29 ~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~-~cg~~h 69 (634)
++.+..|-+-+++| +|++-.+|+...+++.+++ .+|..-
T Consensus 4 a~~c~~i~lrl~~y--rr~garhr~~~s~lA~lli~~~~~~~ 43 (83)
T PF05449_consen 4 ALICLAIALRLMFY--RRNGARHRPWISWLAYLLIVAYGSVP 43 (83)
T ss_pred HHHHHHHHHHHhee--ecCCCccCcHHHHHHHHHHHHHHHHH
Confidence 56788888888777 5566677777776666555 444333
No 158
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=37.34 E-value=2.5e+02 Score=23.60 Aligned_cols=10 Identities=30% Similarity=0.550 Sum_probs=5.4
Q ss_pred HHHHHHhcCC
Q 006706 39 LIYFVQKSAF 48 (634)
Q Consensus 39 ~~~~~~~~~~ 48 (634)
++..++|++-
T Consensus 19 ii~~vr~~~l 28 (115)
T PF10066_consen 19 IIRLVRKRKL 28 (115)
T ss_pred HHHHHHHhhc
Confidence 4455666653
No 159
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.99 E-value=3.6e+02 Score=25.35 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHHhcCC
Q 006706 18 VRYQYISDILIALAYFSIPVELIYFVQKSAF 48 (634)
Q Consensus 18 ~~~~~~s~~~i~~a~~~ip~~~~~~~~~~~~ 48 (634)
.|+..+..+++.++.|++-..+.-|+.....
T Consensus 78 ~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~ 108 (206)
T PF06570_consen 78 PWLMALDNSLLFFGIFSLLFGIMGFFSPKNS 108 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3555566667777788877777776666443
No 160
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=36.44 E-value=1.3e+02 Score=32.28 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=4.9
Q ss_pred HHHHHHhhc
Q 006706 466 NIVGNAVKF 474 (634)
Q Consensus 466 nLl~NAik~ 474 (634)
+.++++++.
T Consensus 450 e~~t~~l~~ 458 (505)
T PF06638_consen 450 EPVTSGLRD 458 (505)
T ss_pred hhhhhcccC
Confidence 355666653
No 161
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=36.44 E-value=82 Score=29.89 Aligned_cols=15 Identities=7% Similarity=-0.030 Sum_probs=12.4
Q ss_pred CCCCCceEEecCchh
Q 006706 609 DLTGPKPLFRDNDQI 623 (634)
Q Consensus 609 ~~~~~~vLvvDD~~~ 623 (634)
+..|++||||||--.
T Consensus 115 ~i~gk~VLIVDDIvD 129 (211)
T PTZ00271 115 SVENRHILIVEDIVD 129 (211)
T ss_pred CCCCCEEEEEecccC
Confidence 468999999999754
No 162
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=35.55 E-value=2e+02 Score=31.63 Aligned_cols=77 Identities=6% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHhhhHHHHHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 006706 21 QYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCI 100 (634)
Q Consensus 21 ~~~s~~~i~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~~a~vs~~ 100 (634)
...+-....+..+.+|+.++++..++|.+.=.|.+.+++.+ .++.+..+..+... | .+-..+.+++++.
T Consensus 177 ~~~~a~~~~~~~~~ip~~~v~~~~g~k~~r~~~p~~L~~g~--~~~~~~~~~a~~~g-p--------el~~i~g~l~~l~ 245 (522)
T PF02652_consen 177 SSMVALQLPVLSLLIPFLMVWLVGGWKGVREVWPFALVAGL--SFAIPQWLVANFLG-P--------ELPGILGGLVGLA 245 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHHHHHHHHHHcc-c--------ccchHHHHHHHHH
Confidence 33344455677888999999999887775444444433332 33334443333322 1 2334555566666
Q ss_pred HHHHHHHH
Q 006706 101 TALMLVHI 108 (634)
Q Consensus 101 ta~~l~~~ 108 (634)
..+.+.|.
T Consensus 246 ~~~~~~r~ 253 (522)
T PF02652_consen 246 VLVLFLRF 253 (522)
T ss_pred HHHHHHHH
Confidence 65555554
No 163
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=35.22 E-value=1.8e+02 Score=21.43 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=22.7
Q ss_pred chhHHHHHHHHHHHHhhhHHHhHHHhcc
Q 006706 50 PYRWVLMQFGSFIILCGLTHFISLWTFT 77 (634)
Q Consensus 50 ~~~~~~~~~~~f~~~cg~~h~~~~~~~~ 77 (634)
++|.++..++.||-+.|+--.+....+-
T Consensus 5 ~~RivlAtiavFiaLagl~~~I~GlLfD 32 (62)
T PF11177_consen 5 EYRIVLATIAVFIALAGLAAVIHGLLFD 32 (62)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5888999999999999977666666655
No 164
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=35.01 E-value=3.2e+02 Score=24.14 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=4.1
Q ss_pred HhHHHhcccc
Q 006706 70 FISLWTFTVH 79 (634)
Q Consensus 70 ~~~~~~~~~~ 79 (634)
+.++..+|.|
T Consensus 94 ~~G~~~f~~P 103 (144)
T cd08766 94 LFGFVTFWFP 103 (144)
T ss_pred HHHHHHHHcC
Confidence 3333344444
No 165
>PF00556 LHC: Antenna complex alpha/beta subunit; InterPro: IPR000066 The antenna complexes of photosynthetic bacteria function as light-harvesting systems that absorb light and transfer the excitation energy to the reaction centres. The antenna complexes usually comprise 2 polypeptides (alpha- and beta-chains), 2-3 bacteriochlorophyll molecules and some carotenoids [, ]. The alpha- and beta-chains are small proteins of 40-70 residues. Each has an N-terminal hydrophilic cytoplasmic domain, a single transmembrane (TM) region, and a small C-terminal hydrophilic periplasmic domain. In both chains, the TM domain houses a conserved His residue, presumed to be involved in binding the magnesium atom of a bacteriochlorophyll group. The beta-chains are characterised by a further histidine at the C-terminal extremity of the cytoplasmic domain, which is also thought to be involved in bacteriochlorophyll binding.; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0016021 integral to membrane, 0030077 plasma membrane light-harvesting complex; PDB: 1LGH_J 1XRD_A 1NKZ_D 1KZU_B 2FKW_B 1IJD_E 1DX7_A 1JO5_A 1WRG_A.
Probab=34.66 E-value=71 Score=21.20 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHhhhHHHhHHH
Q 006706 50 PYRWVLMQFGSFIILCGLTHFISLW 74 (634)
Q Consensus 50 ~~~~~~~~~~~f~~~cg~~h~~~~~ 74 (634)
|+.....++++|.+++-.-|++...
T Consensus 10 p~~~~~~~~~~~~viAl~~H~lv~~ 34 (40)
T PF00556_consen 10 PRVGLPALFGAFAVIALLAHFLVLS 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh
Confidence 6777778899999999999988765
No 166
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=33.81 E-value=1.5e+02 Score=30.67 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIET 384 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~ 384 (634)
...+-..++..+|+-.....++++.+.+-...++..+.+..
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44678888999999777778888877776666665554433
No 167
>PF14979 TMEM52: Transmembrane 52
Probab=32.73 E-value=41 Score=29.30 Aligned_cols=18 Identities=44% Similarity=1.228 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHhhhH
Q 006706 51 YRWVLMQFGSFIILCGLT 68 (634)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~ 68 (634)
|-|++++.+...++||+|
T Consensus 21 yIwLill~~~llLLCG~t 38 (154)
T PF14979_consen 21 YIWLILLIGFLLLLCGLT 38 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777888854
No 168
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=32.69 E-value=1e+02 Score=28.32 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=12.2
Q ss_pred CCCCCceEEecCchh
Q 006706 609 DLTGPKPLFRDNDQI 623 (634)
Q Consensus 609 ~~~~~~vLvvDD~~~ 623 (634)
+..|++||||||--.
T Consensus 89 ~v~gk~VLlVDDIiD 103 (178)
T PRK15423 89 DIRGKDVLIVEDIID 103 (178)
T ss_pred CCCCCEEEEEeeecC
Confidence 468999999999653
No 169
>PF14150 YesK: YesK-like protein
Probab=31.30 E-value=2.6e+02 Score=21.96 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=32.0
Q ss_pred HHHHHHhhHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhhhHHHhHHHhc
Q 006706 27 LIALAYFSIPVELIYFVQKS-AFFPYRWVLMQFGSFIILCGLTHFISLWTF 76 (634)
Q Consensus 27 ~i~~a~~~ip~~~~~~~~~~-~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~ 76 (634)
++.++++-+-+.+.|+.+|| ++-++.|++. ...+++|-.+-+..+...
T Consensus 3 llg~~~~ii~f~~S~~lr~r~p~k~~~~il~--~ililis~~~v~~S~f~v 51 (81)
T PF14150_consen 3 LLGIVTFIIVFGVSVLLRKRFPKKQPEIILP--LILILISLLTVLISIFLV 51 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHH--HHHHHHHHHHHHHHHheE
Confidence 45678888888888888877 4445555544 246677766666665553
No 170
>PRK13661 hypothetical protein; Provisional
Probab=30.93 E-value=2.9e+02 Score=25.57 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhHH------HhHHHhcccchhHHHHHHHHHHHHHHHHH
Q 006706 53 WVLMQFGSFIILCGLTH------FISLWTFTVHSKAVAVVMTIAKMACAFVS 98 (634)
Q Consensus 53 ~~~~~~~~f~~~cg~~h------~~~~~~~~~~~~~~~~~~~~~k~~~a~vs 98 (634)
..++.|..+.++|+.-+ +.+++.|..|..- -...++++.++-.++
T Consensus 107 k~~~~f~i~~~i~n~i~~g~i~~~~di~~y~~p~~~-v~~q~~~~~~~n~~~ 157 (182)
T PRK13661 107 KDIVYFNIVQIIANVIAWGLIAPIGDIIIYSEPANK-VFAQGIVAAIANIIS 157 (182)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHhHHHHHHHHHHH
Confidence 44555666666666543 3444444444332 234455555544433
No 171
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=29.21 E-value=1.4e+02 Score=27.47 Aligned_cols=15 Identities=27% Similarity=0.189 Sum_probs=12.0
Q ss_pred CCCCCceEEecCchh
Q 006706 609 DLTGPKPLFRDNDQI 623 (634)
Q Consensus 609 ~~~~~~vLvvDD~~~ 623 (634)
+..|++||||||--.
T Consensus 94 ~v~gk~VLIVDDIid 108 (181)
T PRK09162 94 SLKGRTVLVVDDILD 108 (181)
T ss_pred CCCCCEEEEEccccC
Confidence 358899999999653
No 172
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=29.06 E-value=7.5e+02 Score=26.61 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=24.4
Q ss_pred CCCCchh-hhHHHHHhhhHHHHHHHhhHHHHHHHHHH
Q 006706 9 TQWPPDE-LLVRYQYISDILIALAYFSIPVELIYFVQ 44 (634)
Q Consensus 9 ~~~~~~~-~~~~~~~~s~~~i~~a~~~ip~~~~~~~~ 44 (634)
..|.++. +...|+++-=....++.+.+|++..|.=.
T Consensus 69 ~~~~~~~~~~~~W~~iyw~~~il~w~ilPf~~~y~es 105 (471)
T PF04791_consen 69 GQWLNTSLMEVLWYIIYWLTFILTWLILPFAQFYYES 105 (471)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566554 33357777666666788999999888643
No 173
>PF13974 YebO: YebO-like protein
Probab=28.74 E-value=2e+02 Score=22.51 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhhhh
Q 006706 99 CITALMLVHIIPDLLS 114 (634)
Q Consensus 99 ~~ta~~l~~~~p~~l~ 114 (634)
+..++.+|.++-++-.
T Consensus 8 ~lv~livWFFVnRaSv 23 (80)
T PF13974_consen 8 LLVGLIVWFFVNRASV 23 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344456666555443
No 174
>COG4960 CpaA Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=28.17 E-value=3.5e+02 Score=24.48 Aligned_cols=45 Identities=31% Similarity=0.515 Sum_probs=31.7
Q ss_pred hHHHHHHHhhHHHHHHHHHH---hcCCCchhHHHHHHHHHHHHhhhHH
Q 006706 25 DILIALAYFSIPVELIYFVQ---KSAFFPYRWVLMQFGSFIILCGLTH 69 (634)
Q Consensus 25 ~~~i~~a~~~ip~~~~~~~~---~~~~~~~~~~~~~~~~f~~~cg~~h 69 (634)
|..++....++|+.+++... |++-+|.+.++.++.+|+++.-..|
T Consensus 2 ~~~~~~~~l~~~~~~~~aa~sDi~s~~IpN~lv~~ll~~~~i~a~~~~ 49 (168)
T COG4960 2 DMIIASLFLIFPVLLVFAAYSDIRSRTIPNRLVLVLLLAFAILAPVAG 49 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHcC
Confidence 55667777888887777654 3456799999888888777544443
No 175
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=27.86 E-value=7.5e+02 Score=26.18 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=20.3
Q ss_pred HHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 69 HFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALMLVH 107 (634)
Q Consensus 69 h~~~~~~~~~~~~~~~~~~~~~k~~~a~vs~~ta~~l~~ 107 (634)
=++++++++. .+....+.+..+.|++-+++.+.++.
T Consensus 364 i~LGi~tv~~---~lP~~la~~H~~gA~lLl~~~~~l~~ 399 (403)
T PTZ00127 364 VLLGITTLLS---QVPVHLAVAHQFGALVLLTTLLRLCH 399 (403)
T ss_pred HHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666542 22233466677777776666655544
No 176
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.80 E-value=6.1e+02 Score=25.26 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=14.5
Q ss_pred HHHHHHhhhHHHhHHHhcccc
Q 006706 59 GSFIILCGLTHFISLWTFTVH 79 (634)
Q Consensus 59 ~~f~~~cg~~h~~~~~~~~~~ 79 (634)
+.|++-=-.|-.+++.|+|+.
T Consensus 255 ~vF~l~Rl~tliiaVlt~gfg 275 (374)
T KOG1608|consen 255 AVFVLGRLGTLIIAVLTVGFG 275 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 446666666777888888864
No 177
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=27.18 E-value=3.1e+02 Score=30.90 Aligned_cols=88 Identities=13% Similarity=-0.025 Sum_probs=53.6
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhhHHHhHHHh------cccc---hhHHHHHHHHHHH
Q 006706 23 ISDILIALAYFSIPVELIYFVQKSAF-FPYRWVLMQFGSFIILCGLTHFISLWT------FTVH---SKAVAVVMTIAKM 92 (634)
Q Consensus 23 ~s~~~i~~a~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~f~~~cg~~h~~~~~~------~~~~---~~~~~~~~~~~k~ 92 (634)
.+=..+++-|...|-.|+.+++..+. -+-+.-..+++.-+.+||......... +|+. .++- ..++
T Consensus 124 g~iSse~lP~al~PWvLlPlv~~~r~~~~~rr~aa~salaV~~mGaVNA~atlaa~l~~~l~ll~~~~~rr-----~~r~ 198 (680)
T PF11847_consen 124 GAISSETLPMALAPWVLLPLVRALRGRGSPRRAAARSALAVALMGAVNAVATLAALLPAGLWLLFRRPGRR-----WWRL 198 (680)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhheeeecCCcc-----chhh
Confidence 34455666888899999999987753 344444555787778888765433222 2221 1111 2244
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 006706 93 ACAFVSCITALMLVHIIPDLLSV 115 (634)
Q Consensus 93 ~~a~vs~~ta~~l~~~~p~~l~~ 115 (634)
....+.++.++.+|.++|.++.-
T Consensus 199 ~awW~~~~~las~WWivPLl~lg 221 (680)
T PF11847_consen 199 RAWWLLGVVLASAWWIVPLLLLG 221 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566667789988887654
No 178
>COG3768 Predicted membrane protein [Function unknown]
Probab=27.01 E-value=6.6e+02 Score=25.30 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=24.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHH
Q 006706 76 FTVHSKAVAVVMTIAKMACAFVSCITALMLVHIIPDLLSVKTRELFLK 123 (634)
Q Consensus 76 ~~~~~~~~~~~~~~~k~~~a~vs~~ta~~l~~~~p~~l~~~s~~~~~~ 123 (634)
.|.-..|++| .+-+.++++.++.+..+.+..-.+..++.++.+..
T Consensus 90 ~~qr~dWl~~---~a~~v~~l~vlagv~~v~rEw~rl~rL~~r~~lr~ 134 (350)
T COG3768 90 LFQRADWLGL---GAAAVGALIVLAGVGSVVREWRRLVRLRQRQHLRD 134 (350)
T ss_pred HHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4543444443 33445555555555566666666666766666543
No 179
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=26.47 E-value=3.3e+02 Score=29.87 Aligned_cols=38 Identities=26% Similarity=0.530 Sum_probs=24.5
Q ss_pred HHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHH----HHHhhh
Q 006706 29 ALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSF----IILCGL 67 (634)
Q Consensus 29 ~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f----~~~cg~ 67 (634)
-+++|.||.+..+|....- +.|+|+.=.|-+. .+.||+
T Consensus 158 ~l~~~~ip~~~gff~l~~~-i~~~~~~~i~nyil~~~a~i~gl 199 (952)
T TIGR02921 158 LLAFFAIPAAAGFFELLEE-IEFEHLGDIFNYILFHTAFICGL 199 (952)
T ss_pred HHHHHhhhHHhHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHH
Confidence 3578999999988876543 4677766555432 235764
No 180
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=26.46 E-value=35 Score=31.75 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.3
Q ss_pred CCCCceEEecCchhhhhhhhh
Q 006706 610 LTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 610 ~~~~~vLvvDD~~~~r~v~~~ 630 (634)
+.|++||||||-.+.+.=+++
T Consensus 85 l~GkkVLIVDDI~DTG~Tl~~ 105 (192)
T COG2236 85 LSGKKVLIVDDIVDTGETLEL 105 (192)
T ss_pred cCCCeEEEEecccCchHhHHH
Confidence 689999999998887765554
No 181
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=26.43 E-value=3.9e+02 Score=22.43 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhh
Q 006706 126 ADELDREMGLIL 137 (634)
Q Consensus 126 ~~~l~~~~~~~~ 137 (634)
.+++++..+.++
T Consensus 108 ~~~l~~d~~~lk 119 (121)
T PF07332_consen 108 IAELKEDIAALK 119 (121)
T ss_pred HHHHHHHHHHhh
Confidence 344555444443
No 182
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.34 E-value=2.4e+02 Score=27.94 Aligned_cols=45 Identities=20% Similarity=0.507 Sum_probs=28.0
Q ss_pred HhhHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHhhhHHHhHHHhcc
Q 006706 32 YFSIPVELIYFVQKSAF---FPYRWVLMQFGSFIILCGLTHFISLWTFT 77 (634)
Q Consensus 32 ~~~ip~~~~~~~~~~~~---~~~~~~~~~~~~f~~~cg~~h~~~~~~~~ 77 (634)
|||+|+.++....-.+- -+++|+++ ...|+...-..|++..---.
T Consensus 230 ylTlPvLf~MiSnHyp~~y~~~~nWlil-~li~~~g~~IRhfFn~rH~~ 277 (300)
T PF06181_consen 230 YLTLPVLFLMISNHYPMTYGHPYNWLIL-ALIMLAGALIRHFFNLRHAG 277 (300)
T ss_pred eeHHHHHHHHHhccCccccccchhHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 99999887774322221 15888766 44445555567888775543
No 183
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=25.58 E-value=62 Score=34.21 Aligned_cols=16 Identities=25% Similarity=0.682 Sum_probs=13.2
Q ss_pred EEEEEEcCCCCCCCCh
Q 006706 512 RVQVNDSGCGVPPQDI 527 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~ 527 (634)
.+.|.|+|+||..+++
T Consensus 143 lLhi~DtGiGMT~edL 158 (785)
T KOG0020|consen 143 LLHITDTGIGMTREDL 158 (785)
T ss_pred eeeEecccCCccHHHH
Confidence 5788999999987654
No 184
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=25.35 E-value=1.2e+02 Score=30.81 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=15.2
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHh
Q 006706 23 ISDILIALAYFSIPVELIYFVQK 45 (634)
Q Consensus 23 ~s~~~i~~a~~~ip~~~~~~~~~ 45 (634)
++|.++++.-..+...++..+++
T Consensus 25 vgdi~~~~~il~ll~~~~~~~~~ 47 (318)
T PF12725_consen 25 VGDILYYLLILFLLYYLIRLIRK 47 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777666666666666654
No 185
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=24.94 E-value=2e+02 Score=26.80 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=49.3
Q ss_pred CChhHHHHhccCCeEEcCCCCchh-hhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCcc
Q 006706 210 NLPIVTDVFNSAQAMRLPYNCPLA-RIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (634)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~ 288 (634)
..+.+..++++.+.+.+.+..-.+ +.+|. ...+.....++.|+.. -|++++..+.+|.|
T Consensus 120 ~g~i~~~~~~~~~~~yL~nl~lyPGr~Ef~--~lP~ntq~VlvqP~g~------------------~G~lvlgs~~~R~f 179 (195)
T PF11152_consen 120 PGPICQRAMESGKLIYLVNLKLYPGRVEFD--YLPENTQSVLVQPLGQ------------------NGVLVLGSNSPRAF 179 (195)
T ss_pred hHHHHHHHHhcCCceeccccccCCCchhhh--hcCCCCcEEEEEEcCC------------------CeEEEEeeCCcccc
Confidence 356778889988887776554322 22222 2223345556666532 27788888999999
Q ss_pred chhhhHHHHHHHHH
Q 006706 289 RDHELELIDVVADQ 302 (634)
Q Consensus 289 ~~~e~~ll~~~a~~ 302 (634)
+..|..++..+|+.
T Consensus 180 t~~D~~Wi~~iA~K 193 (195)
T PF11152_consen 180 TKSDEAWIAGIADK 193 (195)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998875
No 186
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.48 E-value=87 Score=30.77 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006706 319 ARNQLMEQNVALDSARREAEKAI 341 (634)
Q Consensus 319 ~~~~l~~~~~~l~~~~~~~~~~~ 341 (634)
..++|.+++++|++..+++++.+
T Consensus 65 kq~eL~~rqeEL~Rke~ELdRRE 87 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDRRE 87 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444445544444444443
No 187
>TIGR00799 mtp Golgi 4-transmembrane spanning transporter. The proteins of the MET family have 4 TMS regions and are located in late endosomal or lysosomal membranes. Substrates of the mouse MTP transporter include thymidine, both nucleoside and nucleobase analogues, antibiotics, anthracyclines, ionophores and steroid hormones. MET transporters may be involved in the subcellular compartmentation of steroid hormones and other compounds.Drug sensitivity by mouse MET was regulated by compounds that inhibit lysosomal function, interface with intracellular cholesterol transport, or modulate the multidrug resistance phenotype of mammalian cells. Thus, MET family members may compartmentalize diverse hydrophobic molecules, thereby affecting cellular drug sensitivity,nucleoside/nucleobase availability and steroid hormone responses.
Probab=24.43 E-value=4.4e+02 Score=25.19 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=32.4
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHHhcCC-CchhHHHHHHHHHH
Q 006706 18 VRYQYISDILIALAYFSIPVELIYFVQKSAF-FPYRWVLMQFGSFI 62 (634)
Q Consensus 18 ~~~~~~s~~~i~~a~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~f~ 62 (634)
.--|++|..+..-+.|.|.+.+++++.++|. +.+.++..++.=|+
T Consensus 56 ~ia~~~ss~~~~~~l~~~slsll~gvI~~r~~~l~pfl~~Qi~D~~ 101 (258)
T TIGR00799 56 RIADLYSSFLLINALFIISVSLLMGVVKNREKYLYPFLSLQIMDFL 101 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeHHHHHHHHHHH
Confidence 4457888888888899999999999887753 33444555555444
No 188
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=24.07 E-value=88 Score=19.18 Aligned_cols=16 Identities=6% Similarity=0.355 Sum_probs=8.3
Q ss_pred HhhHHHHH--HHHHHhcC
Q 006706 32 YFSIPVEL--IYFVQKSA 47 (634)
Q Consensus 32 ~~~ip~~~--~~~~~~~~ 47 (634)
.|.|++.. +++++|++
T Consensus 12 ly~~l~~~s~~~Li~k~~ 29 (29)
T TIGR03063 12 LYAVLFLGSGLFLIRKRK 29 (29)
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 34444443 66666653
No 189
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.82 E-value=4.8e+02 Score=26.05 Aligned_cols=12 Identities=25% Similarity=-0.050 Sum_probs=6.9
Q ss_pred CceEEecCchhh
Q 006706 613 PKPLFRDNDQIA 624 (634)
Q Consensus 613 ~~vLvvDD~~~~ 624 (634)
..|+|++.+--|
T Consensus 266 ~~V~Vi~~~~~~ 277 (283)
T TIGR00219 266 RYVLLVWNDVPN 277 (283)
T ss_pred eEEEEEeCCCCC
Confidence 367777665444
No 190
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=23.66 E-value=3.5e+02 Score=29.39 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=50.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHH-
Q 006706 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKMACAFVSCITALM- 104 (634)
Q Consensus 26 ~~i~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~~~a~vs~~ta~~- 104 (634)
...++..+.||+.++++.-+.|+..=.|-+.+++.+ .|..+.++..+.+.+ .+-..+.+++|......
T Consensus 184 ~~l~~~~~~iP~~lv~~~d~~kgi~e~~p~~lvag~--sfti~q~l~a~~lGP---------elPdIig~lvsl~i~~~f 252 (522)
T COG1620 184 RQLPILSLLIPFLLVFLMDGWKGIKEVWPAILVAGL--SFTIPQFLLANFLGP---------ELPDIIGGLVSLGILALF 252 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhccc---------ccHHHHHHHHHHHHHHHH
Confidence 455788999999999999988876666666656544 466788887777632 12244566666665543
Q ss_pred HHHHhhhh
Q 006706 105 LVHIIPDL 112 (634)
Q Consensus 105 l~~~~p~~ 112 (634)
+.+..|+-
T Consensus 253 lk~~~PK~ 260 (522)
T COG1620 253 LKKWQPKR 260 (522)
T ss_pred HHhhCCch
Confidence 44455553
No 191
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=23.46 E-value=4.9e+02 Score=23.57 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.5
Q ss_pred HHHHhh
Q 006706 19 RYQYIS 24 (634)
Q Consensus 19 ~~~~~s 24 (634)
-||.++
T Consensus 55 ~Wq~~s 60 (179)
T PF14936_consen 55 LWQFLS 60 (179)
T ss_pred HHHHHH
Confidence 344443
No 192
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=23.11 E-value=97 Score=29.35 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=35.2
Q ss_pred eEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCC
Q 006706 452 YAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 524 (634)
Q Consensus 452 ~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~ 524 (634)
+..+||-+-+-+-.+.+.|+..+.+-....--....++ -+++|.-+|.|||.
T Consensus 18 LmPGDPlRAK~iAetfLe~~~~vnevR~mlgfTGtYKG---------------------k~iSvmg~GmGipS 69 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENAVCVNEVRGMLGFTGTYKG---------------------KKISVMGHGMGIPS 69 (236)
T ss_pred ecCCCCchHHHHHHHHHhhhhhhhhhcchhcccceecC---------------------cEEEEEEecCCCcc
Confidence 35589999999999999999998853211111111111 47888899999874
No 193
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.95 E-value=5.5e+02 Score=24.02 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHHHh
Q 006706 38 ELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWT 75 (634)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~ 75 (634)
+.+||..||..=..+-+++-++++++-..++-++..|.
T Consensus 127 ~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l 164 (194)
T PF11833_consen 127 ACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWL 164 (194)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45688888765567778888888887666666665554
No 194
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.89 E-value=58 Score=19.99 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=9.7
Q ss_pred EEEEEEEcCCC
Q 006706 511 LRVQVNDSGCG 521 (634)
Q Consensus 511 l~i~V~D~G~G 521 (634)
..|+|.|+|+-
T Consensus 14 ~qITIeD~GPK 24 (30)
T PF07492_consen 14 FQITIEDTGPK 24 (30)
T ss_pred cEEEEecCCCe
Confidence 78999999974
No 195
>KOG2493 consensus Na+/Pi symporter [Inorganic ion transport and metabolism]
Probab=22.77 E-value=3.3e+02 Score=29.14 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHHHhcccc
Q 006706 41 YFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVH 79 (634)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~ 79 (634)
+++.++++ |+++-+++.+.|-++|+.-..+.+..-|.+
T Consensus 185 ~svl~~~~-p~~~gl~~lp~~y~~~~~~n~f~ivy~Gs~ 222 (512)
T KOG2493|consen 185 HSVLRAAN-PVKNGLRLLPVFYFITVSINVFGIVYDGSK 222 (512)
T ss_pred HHHHHhcC-chhhchhhcchhhhhhhhheeeeEEecCcc
Confidence 44455777 999999999999999998777776554544
No 196
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=22.77 E-value=2.4e+02 Score=22.01 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhHHH--HHHHHHHHH
Q 006706 343 ARNDFRAVMNHEMRTLMH--AIIALSSLL 369 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~--~I~~~~~~l 369 (634)
...+|...|.+|++||.. .+..+...+
T Consensus 29 ~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 29 LVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 457899999999999953 333444444
No 197
>MTH00145 CYTB cytochrome b; Provisional
Probab=22.76 E-value=5.2e+02 Score=27.08 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=54.7
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHH-hcCCCchhHHHHHH----HHHHHHhhhHHHhHHHhcccchhHHHHHHHHHHH
Q 006706 18 VRYQYISDILIALAYFSIPVELIYFVQ-KSAFFPYRWVLMQF----GSFIILCGLTHFISLWTFTVHSKAVAVVMTIAKM 92 (634)
Q Consensus 18 ~~~~~~s~~~i~~a~~~ip~~~~~~~~-~~~~~~~~~~~~~~----~~f~~~cg~~h~~~~~~~~~~~~~~~~~~~~~k~ 92 (634)
...|++|-.+.+..|-.-+-.-..-+. =-+|+++.|.+-.. +.+.++|-.-|+.-.+.+...-.+..|.+|++-.
T Consensus 42 ~~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~Gv~l~ 121 (379)
T MTH00145 42 LGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLL 121 (379)
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHhHHHH
Confidence 345777777777666543321111111 23588988887643 6788889999998887665444556788888766
Q ss_pred HHHHHHHHHHHHH
Q 006706 93 ACAFVSCITALML 105 (634)
Q Consensus 93 ~~a~vs~~ta~~l 105 (634)
+..+....+.+.|
T Consensus 122 ~l~~~~af~GYvL 134 (379)
T MTH00145 122 LLSMGTAFLGYVL 134 (379)
T ss_pred HHHHHHHHHhhcc
Confidence 6555554444433
No 198
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=22.62 E-value=6.9e+02 Score=26.04 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHHHhhHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHhhhHHHhHHHhcccchhHHH-HHHHH
Q 006706 27 LIALAYFSIPVELIYFVQKSAFF-PYRWVLMQFGSFIILCGLTHFISLWTFTVHSKAVA-VVMTI 89 (634)
Q Consensus 27 ~i~~a~~~ip~~~~~~~~~~~~~-~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~~~~~-~~~~~ 89 (634)
.-..+|..|-+.++..+..+=.. ++|++= ...+.+.+-|+-|...+..+-+.+++.+ |+.+.
T Consensus 130 G~~~~yi~~~lllV~~l~~~i~Ye~WR~~H-~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~ 193 (438)
T COG4097 130 GEWSAYIFIGLLLVWRLWLNIGYENWRIAH-RLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIA 193 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHH
Confidence 33456777777777656555434 466655 5677777888899888766433333443 44433
No 199
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.61 E-value=2.1e+02 Score=25.70 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=13.6
Q ss_pred HHhhhHHHHHHHhhHHHHHHHHHH
Q 006706 21 QYISDILIALAYFSIPVELIYFVQ 44 (634)
Q Consensus 21 ~~~s~~~i~~a~~~ip~~~~~~~~ 44 (634)
|...|.=+++.|.++-++.+-|..
T Consensus 23 ~~l~d~kL~lg~~a~~iA~~a~~~ 46 (162)
T PF06703_consen 23 HTLTDIKLALGYLAVIIAGFAFFY 46 (162)
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHh
Confidence 444555556666666665555544
No 200
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=22.54 E-value=6e+02 Score=23.27 Aligned_cols=26 Identities=12% Similarity=0.377 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHhHHHhc
Q 006706 51 YRWVLMQFGSFIILCGLTHFISLWTF 76 (634)
Q Consensus 51 ~~~~~~~~~~f~~~cg~~h~~~~~~~ 76 (634)
.+..=+.-+.|.++||..++....++
T Consensus 116 W~~lt~~W~~fF~~~a~lN~~va~~~ 141 (176)
T PF04279_consen 116 WRRLTLRWALFFLFLAALNEYVAYNF 141 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56667778889999999998876543
No 201
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=22.53 E-value=5.6e+02 Score=22.90 Aligned_cols=8 Identities=0% Similarity=0.185 Sum_probs=2.9
Q ss_pred HHHhcccc
Q 006706 72 SLWTFTVH 79 (634)
Q Consensus 72 ~~~~~~~~ 79 (634)
++.+++.|
T Consensus 103 Gf~~f~~P 110 (153)
T cd08765 103 GISVYLLP 110 (153)
T ss_pred HHHHHHcc
Confidence 33333333
No 202
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.29 E-value=9.7e+02 Score=25.56 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhH
Q 006706 53 WVLMQFGSFIILCGLT 68 (634)
Q Consensus 53 ~~~~~~~~f~~~cg~~ 68 (634)
++.+.+.+++++.|.+
T Consensus 229 ~m~~~~Pim~~~~g~~ 244 (429)
T PRK00247 229 VMAILAPIFPLSLGLT 244 (429)
T ss_pred HHHHHhHHHHHHHHHh
Confidence 3345566666666654
No 203
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=22.29 E-value=3.3e+02 Score=23.18 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.8
Q ss_pred HHHHhh
Q 006706 105 LVHIIP 110 (634)
Q Consensus 105 l~~~~p 110 (634)
+|.++|
T Consensus 59 l~~~lp 64 (118)
T PRK10697 59 LSFALD 64 (118)
T ss_pred HHHhcc
Confidence 444444
No 204
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=22.25 E-value=6.8e+02 Score=25.69 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHhhhhchHHH
Q 006706 91 KMACAFVSCITALMLVHIIPDLLSVKTRELFLKNRADELDREMGLILTQEET 142 (634)
Q Consensus 91 k~~~a~vs~~ta~~l~~~~p~~l~~~s~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (634)
++-++.+.+...+.-|...|... ...-+.+.+++|+++..+++.+..+
T Consensus 35 ~~r~~~~d~~ap~~~~~~~p~~~----~y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 35 KIQDTFVSLCSKFFPKFRQGPSS----HALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHhhHHHhchhhHHHhCcchH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555444443333331 1122334455566665555444443
No 205
>PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins. Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane
Probab=22.17 E-value=2e+02 Score=27.79 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=35.0
Q ss_pred HhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHHHhcccch
Q 006706 32 YFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTVHS 80 (634)
Q Consensus 32 ~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~~~ 80 (634)
-|+=|+++..+...++ |++.+++.+++|.=+.-+=..-.+|..++|-
T Consensus 12 afgP~lalf~~tIa~~--p~liIi~i~~aFfWLvSLLlss~iW~i~~pl 58 (238)
T PF06105_consen 12 AFGPALALFVFTIARD--PQLIIILIAGAFFWLVSLLLSSLIWFIVVPL 58 (238)
T ss_pred HHCHHHHhhheeeeCC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3555666666555555 8999999999999888877777788877763
No 206
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=22.08 E-value=5e+02 Score=23.25 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=31.9
Q ss_pred HHhhhHHH---HHHHhhHHHHHHHH---HHhcCCC--chhHHHHHHHHHHHHhhhHHHhHH
Q 006706 21 QYISDILI---ALAYFSIPVELIYF---VQKSAFF--PYRWVLMQFGSFIILCGLTHFISL 73 (634)
Q Consensus 21 ~~~s~~~i---~~a~~~ip~~~~~~---~~~~~~~--~~~~~~~~~~~f~~~cg~~h~~~~ 73 (634)
..+||.++ +++-|.+|+.+++. ..++++. +.++.+..+..++.+|+.-|+..-
T Consensus 52 a~~a~~l~~~fG~~a~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~ 112 (171)
T PF13491_consen 52 AYLADFLFQLFGLGAYLLPLLLIVWGIRLFRRRSLRRRIRRWLGLLLLLLSLSGLLSLLIP 112 (171)
T ss_pred HHHHHhHHhccchHHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566665 44566778777764 2334433 355556666667778888776543
No 207
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=22.02 E-value=1.8e+02 Score=28.21 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=12.6
Q ss_pred CCCCCceEEecCchhh
Q 006706 609 DLTGPKPLFRDNDQIA 624 (634)
Q Consensus 609 ~~~~~~vLvvDD~~~~ 624 (634)
+..|++||||||--..
T Consensus 147 ~l~gk~VLIVDDIidT 162 (241)
T PTZ00149 147 CLKDKHVLIVEDIIDT 162 (241)
T ss_pred ccCCCEEEEEEeEeCh
Confidence 4688999999996543
No 208
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=21.93 E-value=2.1e+02 Score=27.52 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=38.9
Q ss_pred ceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCC
Q 006706 451 TYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPP 524 (634)
Q Consensus 451 ~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~ 524 (634)
.++.+||.+..+|-. +++|+.+-+....-.......++ -.++|.-+|+|.|.
T Consensus 20 vilpGdP~R~~~iA~-lld~~~~va~~Ref~~~~g~~~g---------------------~~v~v~StGIGgPS 71 (248)
T COG2820 20 VILPGDPERVEKIAK-LLDNPVLVASNREFRTYTGTYNG---------------------KPVTVCSTGIGGPS 71 (248)
T ss_pred EEecCCHHHHHHHHH-HhccchhhhhccceEEEEEEEcC---------------------eEEEEEecCCCCch
Confidence 346799999999887 99999888776554444444433 47899999999775
No 209
>COG4420 Predicted membrane protein [Function unknown]
Probab=21.53 E-value=6.5e+02 Score=23.28 Aligned_cols=14 Identities=0% Similarity=-0.047 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHH
Q 006706 80 SKAVAVVMTIAKMA 93 (634)
Q Consensus 80 ~~~~~~~~~~~k~~ 93 (634)
.||..|+-.++...
T Consensus 86 pyPFi~LnLllS~~ 99 (191)
T COG4420 86 PYPFILLNLLLSTL 99 (191)
T ss_pred CccHHHHHHHHHHH
Confidence 35665555444443
No 210
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.52 E-value=8.8e+02 Score=24.75 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=13.7
Q ss_pred cceeeeHHHHHHHHHHHHHHh
Q 006706 413 DNGPFNLQIVLREVIKLIKPV 433 (634)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~ 433 (634)
+...+++..+++.+...-+.+
T Consensus 327 r~G~i~l~~yLr~VR~lsReQ 347 (365)
T KOG2391|consen 327 RDGVIDLDQYLRHVRLLSREQ 347 (365)
T ss_pred hcCeeeHHHHHHHHHHHHHHH
Confidence 334577788887776665544
No 211
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.20 E-value=4.3e+02 Score=23.52 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=23.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 006706 26 ILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILC 65 (634)
Q Consensus 26 ~~i~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~c 65 (634)
.+|+++.+.+-+.++.+.+.|.+-.||=....+..++++-
T Consensus 21 ~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l 60 (149)
T PF11694_consen 21 ILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLL 60 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHH
Confidence 3444555555556666667777777776665555544443
No 212
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=20.79 E-value=6.9e+02 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcccChhHHHHHHHHHHHhhcCC
Q 006706 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGL 176 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~ 176 (634)
+.+..+.+.++......+-++.+..+..+-++.
T Consensus 140 ~aLdlivr~l~aG~~l~dAl~~~~~e~~~Pl~~ 172 (309)
T COG4965 140 EALDLIVRALRAGAPLPDALRLAAKETPEPLGT 172 (309)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhCCCchHH
Confidence 356667777777777777666666665544433
No 213
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=20.22 E-value=3e+02 Score=29.62 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhcC---CCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccc
Q 006706 461 MQTILNIVGNAVKFT---KEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ 536 (634)
Q Consensus 461 ~~vl~nLl~NAik~~---~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~ 536 (634)
..++++++.||+-|. ..| .+.+.+... +++|++.|.-.+.-....++. +.+
T Consensus 272 ~~alREai~NAv~HRDYs~~~~~v~I~iydD------------------------RieI~NPGgl~~gi~~~~l~~-~~s 326 (467)
T COG2865 272 LEALREAIINAVIHRDYSIRGRNVHIEIYDD------------------------RIEITNPGGLPPGITPEDLLK-GRS 326 (467)
T ss_pred HHHHHHHHHHHHHhhccccCCCceEEEEECC------------------------eEEEECCCCCCCCCChhHccc-CCC
Confidence 357889999999875 344 555554332 567777664222222222222 111
Q ss_pred cCCC---------CCCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCceEEEEEEEecC
Q 006706 537 SRGS---------SCQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 537 ~~~~---------~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
-... -.--+..|-|+.-++..++.||.- ..+... ...|++.++...
T Consensus 327 ~~RNp~LA~~l~~~~liE~~GSGi~rm~~~~~~~gl~~p~f~~~----~~~~~~~~~~~~ 382 (467)
T COG2865 327 KSRNPVLAKVLRDMGLIEERGSGIRRMFDLMEENGLPKPEFEED----NDYVTVILHGKG 382 (467)
T ss_pred cccCHHHHHHHHHhhhHHHhCccHHHHHHHHHHcCCCCceeecc----CCeEEEEEeccc
Confidence 0000 001123488999999999988864 333322 345666666543
No 214
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=20.05 E-value=74 Score=34.76 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=15.0
Q ss_pred EEEEEEEcCCCCCCCChh
Q 006706 511 LRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~~ 528 (634)
-.+++.|+|+||..+++-
T Consensus 102 ~tlti~DtGIGMTk~dLv 119 (656)
T KOG0019|consen 102 RTITIQDTGIGMTKEDLV 119 (656)
T ss_pred ceEEEEecCCCcCHHHHH
Confidence 578999999999987653
Done!