Query 006706
Match_columns 634
No_of_seqs 465 out of 4086
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 9.4E-36 3.2E-40 295.5 30.9 230 336-586 12-249 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 2.2E-33 7.4E-38 280.1 29.6 231 331-588 27-259 (268)
3 1gkz_A [3-methyl-2-oxobutanoat 100.0 7.2E-32 2.5E-36 283.3 22.8 227 340-589 117-377 (388)
4 3jz3_A Sensor protein QSEC; he 100.0 1.1E-32 3.9E-37 266.6 13.4 218 344-588 2-220 (222)
5 3d36_A Sporulation kinase B; G 100.0 5.7E-31 2E-35 258.5 20.9 217 341-589 11-229 (244)
6 2btz_A Pyruvate dehydrogenase 100.0 1.3E-30 4.5E-35 274.1 23.0 219 346-587 97-352 (394)
7 2e0a_A Pyruvate dehydrogenase 100.0 4.1E-30 1.4E-34 270.2 25.6 218 346-587 97-352 (394)
8 3a0r_A Sensor protein; four he 100.0 2.8E-30 9.4E-35 267.9 22.5 214 342-586 130-346 (349)
9 2q8g_A [pyruvate dehydrogenase 100.0 4.8E-30 1.6E-34 270.9 24.4 219 344-586 106-364 (407)
10 4fpp_A Phosphotransferase; fou 100.0 3E-29 1E-33 246.2 21.4 195 347-583 49-246 (247)
11 1y8o_A [pyruvate dehydrogenase 100.0 4.1E-29 1.4E-33 264.4 23.1 220 344-587 118-376 (419)
12 1b3q_A Protein (chemotaxis pro 99.9 2E-27 6.8E-32 247.5 15.2 244 343-629 9-304 (379)
13 3ehh_A Sensor kinase (YOCF pro 99.9 3.2E-25 1.1E-29 213.6 21.4 189 342-585 26-216 (218)
14 1id0_A PHOQ histidine kinase; 99.9 1.1E-23 3.8E-28 190.5 19.5 146 415-587 2-147 (152)
15 1ysr_A Sensor-type histidine k 99.9 3.4E-23 1.2E-27 186.8 17.8 146 413-585 4-149 (150)
16 1bxd_A ENVZ(290-450), protein 99.9 8.3E-23 2.8E-27 186.7 18.3 150 411-588 4-153 (161)
17 3sl2_A Sensor histidine kinase 99.9 1.2E-22 4.1E-27 188.7 18.9 153 416-589 2-156 (177)
18 3a0y_A Sensor protein; ATP-LID 99.9 2.3E-22 7.7E-27 181.8 18.6 146 413-586 2-149 (152)
19 1r62_A Nitrogen regulation pro 99.9 1.8E-22 6.1E-27 184.1 14.4 156 411-585 2-159 (160)
20 1i58_A Chemotaxis protein CHEA 99.9 7.5E-23 2.6E-27 192.3 11.3 151 414-585 2-189 (189)
21 3ehg_A Sensor kinase (YOCF pro 99.8 5.6E-20 1.9E-24 160.8 14.7 125 417-585 2-126 (128)
22 3zxo_A Redox sensor histidine 99.8 7.2E-19 2.5E-23 153.9 14.9 125 415-585 3-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.8 4.8E-18 1.6E-22 147.5 14.6 122 418-585 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.7 2.8E-16 9.5E-21 140.4 11.4 104 455-588 35-142 (145)
25 1mu5_A Type II DNA topoisomera 99.6 3.2E-15 1.1E-19 157.6 12.4 117 453-587 26-150 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.6 2.5E-15 8.6E-20 160.0 11.4 114 456-587 28-149 (530)
27 3p01_A Two-component response 99.5 3.9E-13 1.3E-17 125.0 15.8 172 125-312 11-182 (184)
28 2q2e_B Type 2 DNA topoisomeras 99.4 2.8E-13 9.5E-18 146.2 8.5 115 453-587 31-154 (621)
29 3e0y_A Conserved domain protei 99.4 1.3E-12 4.5E-17 120.5 11.1 170 134-317 5-174 (181)
30 3trc_A Phosphoenolpyruvate-pro 99.4 9.9E-12 3.4E-16 113.4 15.3 164 140-317 4-169 (171)
31 2e4s_A CAMP and CAMP-inhibited 99.3 5.9E-12 2E-16 117.2 12.5 171 135-319 4-186 (189)
32 3k2n_A Sigma-54-dependent tran 99.3 1.2E-11 4.2E-16 113.6 13.1 165 140-318 2-175 (177)
33 2zmf_A CAMP and CAMP-inhibited 99.3 1.6E-11 5.4E-16 114.1 13.5 165 140-318 9-185 (189)
34 4glq_A Methyl-accepting chemot 99.3 3.9E-11 1.3E-15 109.6 12.8 155 149-317 2-162 (171)
35 3ci6_A Phosphoenolpyruvate-pro 99.2 1.2E-10 4.1E-15 105.7 15.0 164 138-315 4-169 (171)
36 3o5y_A Sensor protein; GAF dom 99.2 3.2E-11 1.1E-15 109.5 10.9 158 155-326 2-160 (165)
37 3oov_A Methyl-accepting chemot 99.2 4E-10 1.4E-14 102.3 15.0 158 144-315 2-168 (169)
38 2lb5_A Sensor histidine kinase 99.1 2.1E-10 7.2E-15 108.7 10.4 168 134-315 6-203 (208)
39 1ykd_A Adenylate cyclase; GAF 99.1 1.7E-09 6E-14 113.3 16.8 171 136-319 191-386 (398)
40 2vjw_A GAF-B, GAF family prote 99.1 1.3E-09 4.4E-14 97.1 12.7 134 158-316 1-141 (149)
41 2qyb_A Membrane protein, putat 99.0 8.9E-10 3.1E-14 101.6 11.4 161 144-317 3-166 (181)
42 3dba_A CONE CGMP-specific 3',5 99.0 7.1E-10 2.4E-14 102.4 9.3 153 141-307 4-171 (180)
43 3ibj_A CGMP-dependent 3',5'-cy 99.0 4.8E-09 1.6E-13 118.0 17.4 173 139-324 176-352 (691)
44 1mc0_A 3',5'-cyclic nucleotide 99.0 7.9E-09 2.7E-13 107.0 17.8 169 137-318 174-346 (368)
45 1mc0_A 3',5'-cyclic nucleotide 99.0 1.2E-08 4.1E-13 105.6 18.6 164 142-319 12-176 (368)
46 2w3g_A DOSS, two component sen 98.9 4.5E-09 1.5E-13 93.5 9.9 146 155-316 3-152 (153)
47 3hcy_A Putative two-component 98.9 3.2E-09 1.1E-13 94.7 8.9 143 156-314 1-144 (151)
48 3cit_A Sensor histidine kinase 98.9 3.6E-08 1.2E-12 86.2 15.1 149 136-319 7-157 (160)
49 3mmh_A FRMSR, methionine-R-sul 98.9 5.2E-08 1.8E-12 87.9 16.6 147 142-308 15-161 (167)
50 1ykd_A Adenylate cyclase; GAF 98.9 8.3E-08 2.8E-12 100.4 20.4 166 140-319 5-194 (398)
51 3ibj_A CGMP-dependent 3',5'-cy 98.8 4.7E-08 1.6E-12 109.9 17.4 163 140-317 11-174 (691)
52 1vhm_A Protein YEBR; structura 98.8 1.3E-07 4.6E-12 87.4 14.7 151 140-312 25-176 (195)
53 2k2n_A Sensor protein, SYB-CPH 98.7 1.6E-07 5.4E-12 85.7 12.2 141 159-313 1-171 (172)
54 3nhq_A Bacteriophytochrome; ph 98.7 9.6E-07 3.3E-11 93.2 19.1 161 141-315 122-311 (505)
55 2ool_A Sensor protein; bacteri 98.6 4.1E-07 1.4E-11 91.1 14.5 160 141-314 144-332 (337)
56 4e04_A Bacteriophytochrome (li 98.6 5.4E-07 1.9E-11 89.1 15.1 156 141-310 131-315 (327)
57 3zq5_A Phytochrome-like protei 98.6 1.5E-06 5.1E-11 92.0 19.2 160 142-315 136-324 (520)
58 3s7o_A Bacteriophytochrome; bi 98.6 5.8E-07 2E-11 89.2 14.2 156 141-310 149-333 (343)
59 3rfb_A Putative uncharacterize 98.5 1.5E-06 5.1E-11 78.0 13.1 142 144-307 18-160 (171)
60 1f5m_A GAF; CGMP binding, sign 98.5 3E-06 1E-10 77.6 15.3 146 143-307 26-177 (180)
61 3ksh_A Putative uncharacterize 98.5 2.4E-06 8.1E-11 76.0 13.5 141 145-307 18-159 (160)
62 3bjc_A CGMP-specific 3',5'-cyc 98.4 3.4E-08 1.2E-12 113.7 0.0 171 137-320 146-330 (878)
63 3ke6_A Protein RV1364C/MT1410; 98.4 5.2E-07 1.8E-11 94.0 9.0 90 456-586 294-387 (399)
64 1b63_A MUTL; DNA mismatch repa 98.4 1E-06 3.6E-11 88.9 10.6 85 459-570 24-115 (333)
65 3na3_A DNA mismatch repair pro 98.3 1.3E-06 4.4E-11 87.7 10.0 97 459-582 28-131 (348)
66 1h7s_A PMS1 protein homolog 2; 98.3 7.2E-07 2.5E-11 90.9 8.1 85 459-570 34-125 (365)
67 3mm4_A Histidine kinase homolo 98.3 1.5E-07 5E-12 88.8 2.5 63 558-629 16-78 (206)
68 1ixm_A SPO0B, protein (sporula 98.2 9E-06 3.1E-10 74.7 12.5 144 345-536 22-171 (192)
69 3bjc_A CGMP-specific 3',5'-cyc 98.2 1.3E-07 4.5E-12 108.8 0.0 175 135-322 325-521 (878)
70 1kij_A DNA gyrase subunit B; t 98.2 1.1E-06 3.9E-11 90.2 5.6 84 454-561 31-127 (390)
71 3eea_A GAF domain/HD domain pr 98.2 6.7E-06 2.3E-10 67.8 8.7 149 152-315 7-162 (162)
72 3h4l_A DNA mismatch repair pro 98.1 2.7E-06 9.1E-11 86.3 6.9 85 459-570 25-116 (367)
73 4eho_A Bacteriophytochrome, PA 98.1 3.9E-05 1.3E-09 84.8 16.2 158 144-315 132-318 (635)
74 3zcc_A HAMP, osmolarity sensor 98.1 2.4E-05 8.2E-10 65.2 10.4 65 333-402 49-113 (114)
75 2wer_A ATP-dependent molecular 97.7 7.1E-06 2.4E-10 77.6 1.7 54 462-535 29-97 (220)
76 1yc1_A HSP 86, heat shock prot 97.4 6.6E-05 2.3E-09 72.4 3.9 85 462-570 71-181 (264)
77 3zrx_A AF1503 protein, osmolar 97.4 0.00059 2E-08 56.5 9.2 60 339-403 55-114 (115)
78 2ior_A Chaperone protein HTPG; 97.4 2E-05 6.8E-10 75.1 -0.1 55 462-536 50-119 (235)
79 1qy5_A Endoplasmin; GRP94, NEC 97.4 1.6E-05 5.3E-10 76.9 -1.4 102 463-584 32-185 (269)
80 1s16_A Topoisomerase IV subuni 97.2 0.00038 1.3E-08 71.3 7.0 48 512-559 64-124 (390)
81 1ei1_A DNA gyrase B, GYRB; ATP 97.1 0.00084 2.9E-08 68.7 7.3 78 459-559 34-127 (391)
82 3t0h_A Heat shock protein HSP 97.0 0.0001 3.5E-09 69.4 0.2 55 512-570 80-145 (228)
83 2gqp_A Endoplasmin; GRP94, HSP 96.9 0.0002 7E-09 68.1 1.3 85 462-570 35-150 (236)
84 3peh_A Endoplasmin homolog; st 96.8 0.00035 1.2E-08 67.2 2.1 18 512-529 94-111 (281)
85 1y4s_A Chaperone protein HTPG; 96.6 0.0019 6.5E-08 68.9 6.0 77 462-558 30-134 (559)
86 3o0i_A HSP90AA1 protein; HSP90 96.6 0.00021 7.2E-09 68.0 -1.5 20 512-531 108-127 (256)
87 3fv5_A DNA topoisomerase 4 sub 96.6 0.0034 1.2E-07 57.9 6.6 75 461-558 19-109 (201)
88 3cwv_A DNA gyrase, B subunit, 96.5 0.0022 7.6E-08 65.0 5.7 78 456-558 27-109 (369)
89 2cg9_A ATP-dependent molecular 96.5 0.0014 4.7E-08 71.2 4.1 101 463-583 30-178 (677)
90 3nmq_A Heat shock protein HSP 96.3 0.00049 1.7E-08 64.7 -0.8 18 511-528 86-103 (239)
91 4duh_A DNA gyrase subunit B; s 95.9 0.013 4.4E-07 54.7 6.8 79 458-559 34-128 (220)
92 2ioq_A Chaperone protein HTPG; 95.8 0.0022 7.5E-08 69.3 1.4 52 462-533 30-96 (624)
93 2o1u_A Endoplasmin; GRP94, HSP 95.8 0.0023 8E-08 69.4 1.5 51 462-532 48-113 (666)
94 3ttz_A DNA gyrase subunit B; p 95.6 0.013 4.5E-07 53.7 5.3 47 456-525 28-77 (198)
95 4emv_A DNA topoisomerase IV, B 95.5 0.022 7.4E-07 53.3 6.7 83 456-559 37-132 (226)
96 1zxm_A TOPO IIA ATPase, DNA to 95.5 0.042 1.4E-06 56.2 9.1 80 457-558 50-146 (400)
97 1pvg_A DNA topoisomerase II; G 95.2 0.062 2.1E-06 55.2 9.3 101 458-584 63-180 (418)
98 4eu0_A PELD; C-DI-GMP, signali 94.9 0.14 4.9E-06 49.8 10.6 131 160-313 25-156 (298)
99 3ied_A Heat shock protein; HSP 94.4 0.0092 3.1E-07 56.1 0.8 20 512-531 131-150 (272)
100 3lnu_A Topoisomerase IV subuni 93.6 0.1 3.5E-06 53.2 6.7 77 461-560 52-144 (408)
101 3e98_A GAF domain of unknown f 92.2 1.6 5.5E-05 41.4 12.5 158 123-308 78-242 (252)
102 4gfh_A DNA topoisomerase 2; to 89.2 0.69 2.4E-05 53.8 8.1 80 458-559 58-154 (1177)
103 4a2l_A BT_4663, two-component 84.5 0.4 1.4E-05 54.3 2.8 73 218-292 694-773 (795)
104 3ott_A Two-component system se 84.3 0.43 1.5E-05 53.7 2.8 72 220-293 661-740 (758)
105 3hzh_A Chemotaxis response reg 77.2 0.96 3.3E-05 39.1 2.0 19 611-629 35-53 (157)
106 3v9f_A Two-component system se 75.8 0.59 2E-05 52.7 0.2 69 222-292 691-767 (781)
107 3nhq_A Bacteriophytochrome; ph 62.0 7.5 0.00025 40.8 5.0 50 136-185 312-361 (505)
108 2ayx_A Sensor kinase protein R 59.7 8.5 0.00029 36.3 4.7 22 609-630 126-147 (254)
109 3n0r_A Response regulator; sig 43.7 8.9 0.0003 37.0 1.9 19 612-630 160-178 (286)
110 3lmm_A Uncharacterized protein 39.2 75 0.0026 34.0 8.4 97 461-586 298-409 (583)
111 3zq5_A Phytochrome-like protei 37.9 54 0.0019 34.4 6.9 49 137-185 326-374 (520)
112 2lq0_A De novo designed antifr 32.6 31 0.0011 18.6 2.0 14 57-70 8-21 (26)
113 3ehh_A Sensor kinase (YOCF pro 30.0 2.8E+02 0.0096 24.3 10.8 24 420-443 132-155 (218)
114 3luf_A Two-component system re 28.0 24 0.00081 33.2 2.0 19 611-629 123-141 (259)
115 2w1r_A Spovt, stage V sporulat 27.8 2.2E+02 0.0076 23.0 7.8 114 164-304 5-118 (123)
116 2ks1_B Epidermal growth factor 25.6 1E+02 0.0034 20.1 4.0 18 30-47 21-39 (44)
117 3szt_A QCSR, quorum-sensing co 25.5 3.8E+02 0.013 24.3 12.3 107 148-255 7-119 (237)
118 3rlb_A THIT; S-component, ECF 25.1 3.2E+02 0.011 24.2 8.7 93 19-114 88-188 (192)
119 2wdq_C Succinate dehydrogenase 24.2 2.9E+02 0.01 22.5 8.5 20 12-31 21-40 (129)
120 3l39_A Putative PHOU-like phos 23.3 4.2E+02 0.014 24.0 11.8 112 287-401 20-152 (227)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=9.4e-36 Score=295.52 Aligned_cols=230 Identities=29% Similarity=0.472 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccc
Q 006706 336 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL 412 (634)
Q Consensus 336 ~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l 412 (634)
++++..+.+.+|++.++|||||||++|.++++++... ...++.+++++.+.+.++++..++++++++++++.+...+
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 91 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI 91 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence 3445556678999999999999999999999998753 2344567899999999999999999999999999888888
Q ss_pred cceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeec
Q 006706 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK 488 (634)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~ 488 (634)
..+++++.++++++...+...+..+++.+.++.+.+.+..+.+|+..|.||+.||++||+||++.+ .+.+.+...+
T Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~ 171 (258)
T 2c2a_A 92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD 171 (258)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred ccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCC
Confidence 889999999999999999999999999998887655555677899999999999999999999754 3455444333
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCC-CCCccccHHHHHHHHHHhCCEEEE
Q 006706 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQ-TPRAGLGLAICRRFVNLMGGHIWL 567 (634)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~-~~g~GlGL~i~k~iv~~~gG~i~v 567 (634)
+ .+.|+|+|+|+||+++.++++|+||++.+..... ..|+||||++||++++.|||+|++
T Consensus 172 ~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 231 (258)
T 2c2a_A 172 G--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 (258)
T ss_dssp T--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred C--------------------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEE
Confidence 2 3899999999999999999999999998765332 349999999999999999999999
Q ss_pred EecCCCCceEEEEEEEecC
Q 006706 568 DSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 568 ~s~~~g~Gt~f~i~lP~~~ 586 (634)
+|. +|+||+|+|+||...
T Consensus 232 ~s~-~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 232 ESE-VGKGSRFFVWIPKDR 249 (258)
T ss_dssp EEE-TTTEEEEEEEEECCC
T ss_pred Eec-CCCCcEEEEEeeCCC
Confidence 998 899999999999753
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=2.2e-33 Score=280.11 Aligned_cols=231 Identities=27% Similarity=0.372 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 006706 331 DSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGS 409 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~-~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~ 409 (634)
++..+++++.++.+.+|++.++||+||||++|.++++++.+. ..+++.+++++.+.+.++++..++++++++++.+.+.
T Consensus 27 ~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~ 106 (268)
T 4ew8_A 27 ADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGE 106 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 334445555566678999999999999999999999999864 4677888999999999999999999999999999888
Q ss_pred ccccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeec
Q 006706 410 LELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAK 488 (634)
Q Consensus 410 ~~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~ 488 (634)
..+....+++.++++++...+...+..+++.+.++.+.+.+. +.+|+..|.+|+.||+.||+||++. +.+.+.+...+
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~-v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~~ 185 (268)
T 4ew8_A 107 MALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRAL 185 (268)
T ss_dssp CCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSCE-EEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEECS
T ss_pred cceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCce-EecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEecC
Confidence 888889999999999999999999999999999998776654 7789999999999999999999986 66666665543
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEE
Q 006706 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLD 568 (634)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~ 568 (634)
+ .+.|+|+|||+||+++..+++|+||++++. .|+|+||++|+++++.|||+|+++
T Consensus 186 ~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-----~g~GlGL~i~~~~~~~~gG~i~i~ 240 (268)
T 4ew8_A 186 G--------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-----GGPGLGLALVKALVELHGGWVALE 240 (268)
T ss_dssp S--------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCSS-----CCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred C--------------------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-----CCCcccHHHHHHHHHHcCCEEEEE
Confidence 3 499999999999999999999999996553 488999999999999999999999
Q ss_pred ecCCCCceEEEEEEEecCCC
Q 006706 569 SEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 569 s~~~g~Gt~f~i~lP~~~~~ 588 (634)
+. +++||+|++.||+...+
T Consensus 241 s~-~~~Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 241 SE-PGNGSTFTCHLPETQQP 259 (268)
T ss_dssp EC-TTSCEEEEEEEECCC--
T ss_pred ec-CCCCEEEEEEecCCCCC
Confidence 98 89999999999986544
No 3
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=7.2e-32 Score=283.27 Aligned_cols=227 Identities=14% Similarity=0.130 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeee
Q 006706 340 AIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFN 418 (634)
Q Consensus 340 ~~~~~~~~~~~isHelr~PL~~I~-~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~ 418 (634)
.++.+.++++.++||++|||+.|. ++.+++.....+++.+++++.+.++..++..++++++++++.+.+...+..+.++
T Consensus 117 ~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~ 196 (388)
T 1gkz_A 117 DEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLS 196 (388)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCC
Confidence 355678999999999999999998 5555554444467788999999999999999999999999998888888889999
Q ss_pred HHHHHHHHHHHHHHhhhcC---CceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC---------cEEEEEEe
Q 006706 419 LQIVLREVIKLIKPVASCK---KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSIIASV 486 (634)
Q Consensus 419 l~~ll~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g---------~i~v~~~~ 486 (634)
+.+++++++..++..+..+ .+.+.+..+.+ ..+.+|+..|.+|+.||+.||+||+..+ .|.|.+..
T Consensus 197 l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~ 274 (388)
T 1gkz_A 197 PKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN 274 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCC--CceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe
Confidence 9999999999999998877 33455544433 3366799999999999999999999765 57776654
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC---------------------CCC
Q 006706 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC---------------------QTP 545 (634)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~---------------------~~~ 545 (634)
.++ ++.|+|+|+|+||+++.++++|++||+++.... ...
T Consensus 275 ~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (388)
T 1gkz_A 275 NDV--------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMH 334 (388)
T ss_dssp CSS--------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCS
T ss_pred CCC--------------------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcC
Confidence 432 499999999999999999999999999876431 125
Q ss_pred CccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCC
Q 006706 546 RAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNN 589 (634)
Q Consensus 546 g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~ 589 (634)
|+|+||++||.+++.|||+|+++|. +|.||+|+|+||......
T Consensus 335 G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~ 377 (388)
T 1gkz_A 335 GFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDGRE 377 (388)
T ss_dssp CSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSSCC
T ss_pred CccCCHHHHHHHHHHhCCEEEEEec-CCCcEEEEEEecCCCCCC
Confidence 9999999999999999999999999 899999999999764443
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.98 E-value=1.1e-32 Score=266.59 Aligned_cols=218 Identities=22% Similarity=0.285 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 344 RNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
+++|++.++||+||||++|.++++++..... +++.+++++.+.++++++..++++++++++.+.+......+.+++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 4579999999999999999999998876533 334467788899999999999999999999988887888899999999
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCc
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYP 502 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~ 502 (634)
+++++..+...+..+++.+.++.+...+ .+.+|+..+.+|+.||++||+||++.+.. +.+.....
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~-i~i~~~~~------------- 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSV-VDVTLNAD------------- 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCE-EEEEECSS-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce-EEecCHHHHHHHHHHHHHHHHHcCCCCCe-EEEEEccC-------------
Confidence 9999999999999999999999877644 46789999999999999999999976543 22222211
Q ss_pred cCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006706 503 VSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 503 ~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
.|.|+|||+||+++.++++|+||++++.. ...|+|+||++||++++.|||+|+++|. +++||+|++.+
T Consensus 147 ---------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~~~ 214 (222)
T 3jz3_A 147 ---------NFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKVSW 214 (222)
T ss_dssp ---------EEEEECSCC----------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEEEC
T ss_pred ---------eEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHHHHHHHHcCCEEEEEcC-CCCcEEEEEee
Confidence 28899999999999999999999986532 2348999999999999999999999999 99999999999
Q ss_pred EecCCC
Q 006706 583 KLGICN 588 (634)
Q Consensus 583 P~~~~~ 588 (634)
|....+
T Consensus 215 P~~~~~ 220 (222)
T 3jz3_A 215 LEHHHH 220 (222)
T ss_dssp CCC---
T ss_pred cCCCCC
Confidence 975443
No 5
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=5.7e-31 Score=258.53 Aligned_cols=217 Identities=21% Similarity=0.433 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeH
Q 006706 341 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 341 ~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~-~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
.+.+++|++.++||+||||++|.++++++.+... +++.+++++.+.+.++++..++++++++++.... ..+++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 3446789999999999999999999999987654 4556789999999999999999999998886543 4568999
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCCCCCC
Q 006706 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSDWRPP 498 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~~~~~ 498 (634)
..+++++...+...+..+++.+.+..++ ..+.+|+..+.+++.||+.||++|++. +.+.+.+...++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC---------
Confidence 9999999999999998888888887643 347789999999999999999999954 556666655433
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEE
Q 006706 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|+|+|+|+||+++..+++|+||++++.. .|.|+||++|+++++.|||+|++++. +++||+|
T Consensus 155 -----------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~----~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~~ 218 (244)
T 3d36_A 155 -----------RVLIRIADTGVGMTKEQLERLGEPYFTTKGV----KGTGLGMMVVYRIIESMNGTIRIESE-IHKGTTV 218 (244)
T ss_dssp -----------EEEEEEEECSSCCCHHHHHHTTSTTCCSSGG----GCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEE
T ss_pred -----------EEEEEEEecCCCCCHHHHHHHhcccccCCCC----CCcchhHHHHHHHHHHcCCEEEEEec-CCCcEEE
Confidence 4999999999999999999999999986632 48899999999999999999999998 8999999
Q ss_pred EEEEEecCCCC
Q 006706 579 TFLVKLGICNN 589 (634)
Q Consensus 579 ~i~lP~~~~~~ 589 (634)
+|+||+...+.
T Consensus 219 ~i~lP~~~~~~ 229 (244)
T 3d36_A 219 SIYLPLASSPS 229 (244)
T ss_dssp EEEEECCC---
T ss_pred EEEecCCCCCC
Confidence 99999875443
No 6
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.97 E-value=1.3e-30 Score=274.10 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=173.6
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHhhhC-CCcccc
Q 006706 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTPE----QRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 413 (634)
Q Consensus 346 ~~~~~isHelr~-----PL~~I~~~~~~l~~~~~~~~----~~~~l~--~i~~~~~~l~~li~~ll~~~~~~~-~~~~l~ 413 (634)
+++..++||||| ||+.|.++++++.....++. .+++++ .+.+.+.++ ++++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 467778899999 99999999999876544433 344677 488888898 9999999999876 455666
Q ss_pred c----eeeeHHHHHHHHHHHHHHhhhc-----CCceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc---
Q 006706 414 N----GPFNLQIVLREVIKLIKPVASC-----KKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (634)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~--~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~--- 479 (634)
. +++++.++++++++.++..+.. +++.+.+.. .+..+..+.+|+..|.+|+.||+.||+||+..++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 8999999999999999998876 888888754 1233445788999999999999999999997664
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCC------CCCCCCcc
Q 006706 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SCQTPRAG 548 (634)
Q Consensus 480 -----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~g~G 548 (634)
|.+.+...++ .+.|+|+|+|+||+++.++++|++||+++.. .....|+|
T Consensus 255 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGEE--------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCcc
Confidence 7776654432 4999999999999999999999999998764 22235999
Q ss_pred ccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006706 549 LGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 549 lGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~ 587 (634)
+||+|||.+++.|||+|+++|. +|+||+|+|.||....
T Consensus 315 LGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~ 352 (394)
T 2btz_A 315 YGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALST 352 (394)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSTT
T ss_pred CCHHHHHHHHHHhCCEEEEEec-CCCceEEEEEecCCCC
Confidence 9999999999999999999999 8999999999998653
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.97 E-value=4.1e-30 Score=270.18 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=181.0
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhhCCCcccc
Q 006706 346 DFRAVMNHEMRT-----LMHAIIALSSLLLETD----LTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 413 (634)
Q Consensus 346 ~~~~~isHelr~-----PL~~I~~~~~~l~~~~----~~~~~~~~l~--~i~~~~~~l~~li~~ll~-~~~~~~~~~~l~ 413 (634)
+++..++||||| ||+.|.++++++.... ..++.+++++ .+.+.+.+| +++++++ +++. .+.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 356677899999 8999999999776432 3556678888 689999999 9999998 6665 5555666
Q ss_pred c----eeeeHHHHHHHHHHHHHHhhhcC-----CceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCc---
Q 006706 414 N----GPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 479 (634)
Q Consensus 414 ~----~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~--- 479 (634)
. +++++.++++++++.++..+..+ ++.+.++. .+..+..+.+|+..|.+|+.||+.||+||+..++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 79999999999999999998877 88888754 2333455788999999999999999999997654
Q ss_pred -----EEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCC------CC-CCCCc
Q 006706 480 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SC-QTPRA 547 (634)
Q Consensus 480 -----i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~-~~~g~ 547 (634)
|.+.+....+ .+.|.|+|+|+||+++.++++|++||+++.. .. ...|+
T Consensus 254 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~ 313 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE--------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGF 313 (394)
T ss_dssp SSCCCEEEEEEECSS--------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCS
T ss_pred CCCCCEEEEEEeCCC--------------------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCc
Confidence 7777655433 4999999999999999999999999998764 22 23599
Q ss_pred cccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006706 548 GLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 548 GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~ 587 (634)
|+||+|||.+++.|||+|+++|. +|+||+|+|+||....
T Consensus 314 GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~ 352 (394)
T 2e0a_A 314 GYGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALSS 352 (394)
T ss_dssp SCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGG
T ss_pred ccCHHHHHHHHHHhCCEEEEEec-CCccEEEEEEeCCCCC
Confidence 99999999999999999999999 8999999999998653
No 8
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=2.8e-30 Score=267.91 Aligned_cols=214 Identities=24% Similarity=0.355 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHH
Q 006706 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLETD-LTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 420 (634)
Q Consensus 342 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~ 420 (634)
+.+++|++.++||+||||++|.++++++.+.. .+++..++++.+.+.++++..++++++++++.. ..+..+++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cccCCcccCHH
Confidence 34678999999999999999999999998653 334457889999999999999999999999842 34567799999
Q ss_pred HHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEeecCCCCCCCCCCC
Q 006706 421 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 421 ~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~-~g~i~v~~~~~~~~~~~~~~~~~ 499 (634)
++++++...+...+..+++.+.++.++..+ .+.+|+..|.+|+.||++||+||++ .+.+.+.+...++
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC----------
Confidence 999999999999998899999998876544 4778999999999999999999995 5777777665443
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHH-HhCCEEEEEecCCCCceEE
Q 006706 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN-LMGGHIWLDSEGLDKGSTV 578 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~i~v~s~~~g~Gt~f 578 (634)
.+.|+|+|||+||+++..+++|+||++++. .|+|+||++||++++ .|||++++++. + +||+|
T Consensus 276 ----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-----~g~GlGL~i~~~~v~~~~gg~i~~~~~-~-~Gt~f 338 (349)
T 3a0r_A 276 ----------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRKIIEDEHGGKIWTENR-E-NGVVF 338 (349)
T ss_dssp ----------EEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTHHHHHHHHTTCSBCCEEEC-S-SEEEE
T ss_pred ----------EEEEEEEECCCCCChHHHhhcCCCCccCCC-----CCccchHHHHHHHHHHhCCCEEEEEeC-C-CcEEE
Confidence 399999999999999999999999998763 488999999999998 89999999997 4 59999
Q ss_pred EEEEEecC
Q 006706 579 TFLVKLGI 586 (634)
Q Consensus 579 ~i~lP~~~ 586 (634)
+|+||+..
T Consensus 339 ~i~lP~~~ 346 (349)
T 3a0r_A 339 IFEIPKTP 346 (349)
T ss_dssp EEEEESCT
T ss_pred EEEecCCC
Confidence 99999753
No 9
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.97 E-value=4.8e-30 Score=270.85 Aligned_cols=219 Identities=17% Similarity=0.215 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHhhh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhC----C
Q 006706 344 RNDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G 408 (634)
Q Consensus 344 ~~~~~~~isHelr~-----PL~~I~~~~~~l~~~~~~----~~~~~~l~~--i~~~~~~l~~li~~ll~~~~~~~----~ 408 (634)
++.|.+.+ ||||| ||+.|.++++++.....+ ++.+++++. +.+.+.++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCC
Confidence 34566655 99999 999999999987754332 334677777 77778888 9999999999864 2
Q ss_pred ---CccccceeeeHHHHHHHHHHHHHHhhhcC-----CceEEEEe--CCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC
Q 006706 409 ---SLELDNGPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 478 (634)
Q Consensus 409 ---~~~l~~~~~~l~~ll~~~~~~~~~~~~~~-----~i~~~~~~--~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g 478 (634)
......+.+++.+++++++..++..+..+ ++.+.++. .+..+..+.+|+..|.+|+.||+.||+||+..+
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 45567789999999999999999998877 88888876 123344578899999999999999999999764
Q ss_pred --------cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCC-------CC
Q 006706 479 --------YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSS-------CQ 543 (634)
Q Consensus 479 --------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~-------~~ 543 (634)
.|.+.+....+ .+.|.|+|+|+||+++.++++|++||+++... ..
T Consensus 263 ~~~~~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE--------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp STTTCCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred cccCCCCCCEEEEEEeCCC--------------------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCC
Confidence 47776655332 49999999999999999999999999987651 22
Q ss_pred CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006706 544 TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 544 ~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
..|+|+||+|||.+++.|||+|+++|. +|.||+|+|+||...
T Consensus 323 ~~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 323 LAGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALS 364 (407)
T ss_dssp SSCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSG
T ss_pred CCCcCCCHHHHHHHHHHhCCEEEEEEc-CCCceEEEEEECCCC
Confidence 359999999999999999999999999 899999999999865
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=3e-29 Score=246.15 Aligned_cols=195 Identities=17% Similarity=0.190 Sum_probs=149.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHHHH
Q 006706 347 FRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLREV 426 (634)
Q Consensus 347 ~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~~~ 426 (634)
+++.+||||||||++|.+++++|.+...++..+++++.|.+.++++..+++ +.++..+. .....++++.++.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll~----~~r~~~~~-~~~~~~~~~~~l~--- 120 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLLQ----FTRVAFGA-SASAENFDSRELE--- 120 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHTTC-CSSCCCEEHHHHH---
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHH----HHHHhhcc-ccccccccHHHHH---
Confidence 678899999999999999999999887777788889999999888877664 34433222 2344567776654
Q ss_pred HHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCC
Q 006706 427 IKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVST 505 (634)
Q Consensus 427 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~ 505 (634)
..++..++.+++.+..+.+... .+..+.|++.||+.||+||++.| .+.+.+...++
T Consensus 121 -~~~~~~~~~~~i~l~~~~~~~~------~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~---------------- 177 (247)
T 4fpp_A 121 -KLAQGVFAHVRPTLDWQIEPQA------MNKPSSRAVLNIAQIAASALPAGGVATVKGVAADG---------------- 177 (247)
T ss_dssp -HHHHHHHTTSSSEEEECCCSCE------ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEETT----------------
T ss_pred -HHHHHHHHhhhhhccccccchh------hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEECC----------------
Confidence 3444455667777776543321 24568899999999999999864 56666655443
Q ss_pred CCceEEEEEEEEcCCC--CCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEE
Q 006706 506 DGHFYLRVQVNDSGCG--VPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVK 583 (634)
Q Consensus 506 ~~~~~l~i~V~D~G~G--i~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP 583 (634)
.+.|.|+|+|+| ++++..+++|++|++.+ ..|+||||+|||++++.|||+|+++|. +| |++|+++||
T Consensus 178 ----~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~-----~~G~GLGLai~~~iv~~hGG~i~v~s~-~~-G~~f~v~LP 246 (247)
T 4fpp_A 178 ----RFSIIADAKGPRARLRPEVLAGLKGEPLAEG-----LGGPWVQAAYLNALVRAAGGQIAVEIG-ED-RASIAAWVP 246 (247)
T ss_dssp ----EEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-----CHHHHHHHHHHHHHHHHTTCEEEEEEE-TT-EEEEEEEEE
T ss_pred ----EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-----CCCccHHHHHHHHHHHHcCCEEEEEEc-CC-EEEEEEEec
Confidence 389999999988 55666677777776544 248999999999999999999999998 55 999999999
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.96 E-value=4.1e-29 Score=264.39 Aligned_cols=220 Identities=17% Similarity=0.215 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhhhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh-CCCcc
Q 006706 344 RNDFRAVMNHEMRTLMH-----AIIALSSLLLETDL----TPEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSLE 411 (634)
Q Consensus 344 ~~~~~~~isHelr~PL~-----~I~~~~~~l~~~~~----~~~~~~~l~~i~~~--~~~l~~li~~ll~~~~~~-~~~~~ 411 (634)
+.+|+. ++|||||||+ .|.++++++..... .++.+++++.+... +.++ ++++++.+.+.. .+...
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 345665 5599999999 77999997765322 34456677776555 7777 899987665543 23222
Q ss_pred c----cceeeeHHHHHHHHHHHHHHhhhc-----CCceEEEEeC--CCCCceEEccHHHHHHHHHHHHHHHhhcCCCC--
Q 006706 412 L----DNGPFNLQIVLREVIKLIKPVASC-----KKLSMTLIMA--PELPTYAVGDEKRLMQTILNIVGNAVKFTKEG-- 478 (634)
Q Consensus 412 l----~~~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~~~--~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g-- 478 (634)
. ..+++++.++++++++.++..+.. +++.+.+... +..+..+.+|+..|.+|+.||++||+||+.++
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 337999999999999999988876 7777776442 23344578899999999999999999999764
Q ss_pred -------cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCC------C-CCC
Q 006706 479 -------YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------S-CQT 544 (634)
Q Consensus 479 -------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~-~~~ 544 (634)
.+.+.+...++ .+.|+|+|+|+||+++.++++|+|||+++.. . ...
T Consensus 275 ~~~~~~~~I~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~ 334 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLGKE--------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPL 334 (419)
T ss_dssp TCSSCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC
T ss_pred ccCCCCCCEEEEEEeCCC--------------------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCc
Confidence 46666654332 4999999999999999999999999998764 1 123
Q ss_pred CCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCC
Q 006706 545 PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGIC 587 (634)
Q Consensus 545 ~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~ 587 (634)
.|+||||+|||.+++.|||+|+++|. +|.||+|+|+||....
T Consensus 335 ~G~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~~ 376 (419)
T 1y8o_A 335 AGFGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALSS 376 (419)
T ss_dssp --CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCGG
T ss_pred CCeecCHHHHHHHHHHhCCEEEEEec-CCCCEEEEEEecCCCC
Confidence 59999999999999999999999999 8999999999998653
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.95 E-value=2e-27 Score=247.53 Aligned_cols=244 Identities=15% Similarity=0.199 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHH
Q 006706 343 ARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 422 (634)
Q Consensus 343 ~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~l 422 (634)
.+.+++.+++||+++|++.+.+..+.+.. +.+.+.++++..+++++++++. ..+.+++..+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~~ 69 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISFV 69 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHHH
Confidence 35678999999999999999877654432 4678888999999999998864 2236788899
Q ss_pred HHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHH---HHHHHHHHHHHHHhhcC-------------CCCcEEEEEEe
Q 006706 423 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEK---RLMQTILNIVGNAVKFT-------------KEGYVSIIASV 486 (634)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~---~l~~vl~nLl~NAik~~-------------~~g~i~v~~~~ 486 (634)
++.+...++..+...+..+++.++.... ..|+. ++.+++.||+.||+||+ +.|.+.+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~---~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~ 146 (379)
T 1b3q_A 70 FNRFPRMVRDLAKKMNKEVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH 146 (379)
T ss_dssp HTTHHHHHHHHHHHTTCCEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCCe---eecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE
Confidence 9999999999888888888887765532 33665 55556999999999997 44666666655
Q ss_pred ecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh------------------------hhhhccccccCCCCC
Q 006706 487 AKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQSRGSSC 542 (634)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------------------------~~if~~f~~~~~~~~ 542 (634)
..+ ++.|+|+|||+||+++.+ +++|+|||+++...+
T Consensus 147 ~~~--------------------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~ 206 (379)
T 1b3q_A 147 EGN--------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVS 206 (379)
T ss_dssp ETT--------------------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------
T ss_pred eCC--------------------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccC
Confidence 433 499999999999999977 889999999887765
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCCCCC------CCCCcCcc-----cCC-CCCCCCCC
Q 006706 543 QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPG------SPIHPVAL-----KGR-ASHGSADL 610 (634)
Q Consensus 543 ~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~~~------~~~~~~~~-----~~~-~~~~~~~~ 610 (634)
..+|+|+||++||++++.|||+|+++|. +|+||+|+++||+....... ......|. ... .+......
T Consensus 207 ~~~G~GlGL~iv~~~v~~~gG~i~v~s~-~g~Gt~f~i~lPl~~~~~~~l~v~vg~~~~aiP~~~V~e~~~~~~~~i~~~ 285 (379)
T 1b3q_A 207 EVSGRGVGMDVVKNVVESLNGSMGIESE-KDKGTKVTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISKEDIQRV 285 (379)
T ss_dssp -----CCCSHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSCEEEEEEEEEETTEEEEEEGGGEEEEECCBSTTCEEE
T ss_pred CCCCccccHHHHHHHHHHCCCEEEEEEc-CCCCeEEEeccCCccccceEEEEEECCEEEccchheeeEEEeeCHHHeEEe
Confidence 6679999999999999999999999999 99999999999987542110 00000000 000 01111223
Q ss_pred CCCceEEecCchhhhhhhh
Q 006706 611 TGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 611 ~~~~vLvvDD~~~~r~v~~ 629 (634)
.+..+|.+||+..+...++
T Consensus 286 ~~~~vl~vrg~~vpl~~L~ 304 (379)
T 1b3q_A 286 QDRDVIVIRGEVIPVYRLW 304 (379)
T ss_dssp TTEEEEEETTEEEEEEEHH
T ss_pred CCccEEEECCcEEeEEEHH
Confidence 5678999999988766654
No 13
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.93 E-value=3.2e-25 Score=213.62 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeH
Q 006706 342 HARNDFRAVMNHEMRTLMHAIIALSSLLLET--DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 419 (634)
Q Consensus 342 ~~~~~~~~~isHelr~PL~~I~~~~~~l~~~--~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l 419 (634)
+.+.+++..++|++++||+++...++.+... ..++...+.+..+.+.+.++...+++++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 4467899999999999999999999887652 3344556777778777777777776665321 25677
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCC
Q 006706 420 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPE 499 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~ 499 (634)
.+.+..+...+ ...++.+.++.+...+.....+...+.+++.|+++||+||++++.+.+.+...++
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~---------- 160 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK---------- 160 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT----------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeCC----------
Confidence 77777666655 3578888887766554445567888999999999999999998888887766543
Q ss_pred CCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEE
Q 006706 500 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVT 579 (634)
Q Consensus 500 ~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~ 579 (634)
.+.|+|+|||+||+++.. .|+|+||++|+++++.|||+|+++|. + ||+|+
T Consensus 161 ----------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~~v~~~gG~i~~~s~-~--Gt~~~ 210 (218)
T 3ehh_A 161 ----------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRERLEFANGSLHIDTE-N--GTKLT 210 (218)
T ss_dssp ----------EEEEEEEESSCCCC-------------------------CHHHHHHHHHHHTTCEEEEECS-S--SEEEE
T ss_pred ----------EEEEEEEECCcCCCCCCC-----------------CCCCCCHHHHHHHHHHcCCEEEEeCC-C--CeEEE
Confidence 399999999999998754 37899999999999999999999998 5 99999
Q ss_pred EEEEec
Q 006706 580 FLVKLG 585 (634)
Q Consensus 580 i~lP~~ 585 (634)
++||+.
T Consensus 211 i~lP~~ 216 (218)
T 3ehh_A 211 MAIPNN 216 (218)
T ss_dssp EEEEC-
T ss_pred EEEecC
Confidence 999974
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.92 E-value=1.1e-23 Score=190.46 Aligned_cols=146 Identities=22% Similarity=0.369 Sum_probs=128.1
Q ss_pred eeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCC
Q 006706 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (634)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~ 494 (634)
+++++.+++++++..+...+..+++.+.++.+.+. .+.+|+..+.+++.||++||+||+++ .+.+.+...++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~~~----- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDE----- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEECSS-----
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEecCC-----
Confidence 47999999999999999999999999999876654 37789999999999999999999986 66666654433
Q ss_pred CCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCC
Q 006706 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDK 574 (634)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~ 574 (634)
.+.|+|+|+|+||+++..+++|++|++.+... .|+|+||++|+++++.|||++++++. +++
T Consensus 74 ---------------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~~~~~~~~gG~i~~~~~-~~~ 134 (152)
T 1id0_A 74 ---------------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVAREITEQYEGKIVAGES-MLG 134 (152)
T ss_dssp ---------------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHHHHHHHHTTCEEEEEEC-TTS
T ss_pred ---------------EEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHHHHHHHHcCCEEEEEeC-CCC
Confidence 28999999999999999999999999877543 58899999999999999999999998 889
Q ss_pred ceEEEEEEEecCC
Q 006706 575 GSTVTFLVKLGIC 587 (634)
Q Consensus 575 Gt~f~i~lP~~~~ 587 (634)
||+|+++||+...
T Consensus 135 G~~~~i~lP~~~~ 147 (152)
T 1id0_A 135 GARMEVIFGRQHS 147 (152)
T ss_dssp SEEEEEEECCCC-
T ss_pred cEEEEEEEecccc
Confidence 9999999998644
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=3.4e-23 Score=186.83 Aligned_cols=146 Identities=23% Similarity=0.350 Sum_probs=117.4
Q ss_pred cceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCC
Q 006706 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESL 492 (634)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~ 492 (634)
+.+++++.+++++++..+.... +++.+.++.+ .+..+.+|+..|.+++.||++||+||++++.+.+.+...++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~--- 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRA--- 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETT---
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCC---
Confidence 4568999999999999988754 4566666543 34457889999999999999999999998877776665543
Q ss_pred CCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCC
Q 006706 493 SDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGL 572 (634)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~ 572 (634)
.+.|+|+|+|+||+++..+++|+||++..... ..|+|+||++|+++++.|||+|++++. +
T Consensus 77 -----------------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~--~~g~GlGL~i~~~~~~~~gG~i~~~~~-~ 136 (150)
T 1ysr_A 77 -----------------GVEIAIDDNGSGVPEGERQVVFERFSRGSTAS--HSGSGLGLALVAQQAQLHGGTASLENS-P 136 (150)
T ss_dssp -----------------EEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHHHHHHHTTCEEEEEEC-T
T ss_pred -----------------EEEEEEEECCCCCCHHHHHHHhcccccCCCCC--CCCCCcCHHHHHHHHHHcCCEEEEeec-C
Confidence 39999999999999999999999999764332 358999999999999999999999998 8
Q ss_pred CCceEEEEEEEec
Q 006706 573 DKGSTVTFLVKLG 585 (634)
Q Consensus 573 g~Gt~f~i~lP~~ 585 (634)
++||+|++.||+.
T Consensus 137 ~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 137 LGGARLVLRLPGP 149 (150)
T ss_dssp TSSEEEEEEEECC
T ss_pred CCCEEEEEEEeCC
Confidence 8999999999974
No 16
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.90 E-value=8.3e-23 Score=186.66 Aligned_cols=150 Identities=22% Similarity=0.333 Sum_probs=126.0
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCC
Q 006706 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPE 490 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~ 490 (634)
.+..+++++.+++++++..+. .++..+.+++... +..+.+|+..|.+++.||+.||+||+ .+.+.+.+...++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~~- 76 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAES----GYEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPN- 76 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHC----SSSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEETT-
T ss_pred cccccccCHHHHHHHHHHHhh----hhcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcCC-
Confidence 456679999999999998854 3455666665443 33477899999999999999999999 7888887766543
Q ss_pred CCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 491 SLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.+.|.|+|+|+||+++.++++|++|++.+... ...|+|+||++|+++++.|||+|++++.
T Consensus 77 -------------------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~-~~~g~GlGL~i~~~~~~~~gG~i~~~~~ 136 (161)
T 1bxd_A 77 -------------------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR-TISGTGLGLAIVQRIVDNHNGMLELGTS 136 (161)
T ss_dssp -------------------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCC-CCCCCSCCCCTTHHHHHHHTSEEEEEEE
T ss_pred -------------------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCC-CCCCcccCHHHHHHHHHHcCCEEEEEEC
Confidence 38999999999999999999999999987643 2358999999999999999999999998
Q ss_pred CCCCceEEEEEEEecCCC
Q 006706 571 GLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 571 ~~g~Gt~f~i~lP~~~~~ 588 (634)
+++|++|++.||+....
T Consensus 137 -~~~G~~~~i~lP~~~~~ 153 (161)
T 1bxd_A 137 -ERGGLSIRAWLPVPVTR 153 (161)
T ss_dssp -TTTEEEEEEEECCCSCC
T ss_pred -CCCeEEEEEEEeCCccc
Confidence 89999999999986543
No 17
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.90 E-value=1.2e-22 Score=188.75 Aligned_cols=153 Identities=27% Similarity=0.444 Sum_probs=124.8
Q ss_pred eeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCC-CcEEEEEEeecCCCCCC
Q 006706 416 PFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVAKPESLSD 494 (634)
Q Consensus 416 ~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~-g~i~v~~~~~~~~~~~~ 494 (634)
++++.++++++++.+... ..+++.+.++++... ..+.+|+..|.+++.||+.||++|+.. +.+.+.+.....+.
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~--- 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD-LYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE--- 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC-CEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTT---
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC-cEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCC---
Confidence 589999999999999988 788999998876543 457889999999999999999999965 66666665443322
Q ss_pred CCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCC-CCCCccccHHHHHHHHHHhCCEEEEEecCCC
Q 006706 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLD 573 (634)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g 573 (634)
.+.|+|+|+|+||+++.++++|++|++.+.... ...|.|+||++|+++++.|||+|++++. ++
T Consensus 77 ---------------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~-~~ 140 (177)
T 3sl2_A 77 ---------------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSI-EG 140 (177)
T ss_dssp ---------------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEE-TT
T ss_pred ---------------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEec-CC
Confidence 499999999999999999999999998765432 2348999999999999999999999998 89
Q ss_pred CceEEEEEEEecCCCC
Q 006706 574 KGSTVTFLVKLGICNN 589 (634)
Q Consensus 574 ~Gt~f~i~lP~~~~~~ 589 (634)
+||+|++.||+.....
T Consensus 141 ~Gt~~~i~lP~~~~~~ 156 (177)
T 3sl2_A 141 KGTTITFTLPYKEEQE 156 (177)
T ss_dssp TEEEEEEEEEEEC---
T ss_pred CCeEEEEEEeCCCCcc
Confidence 9999999999976544
No 18
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=2.3e-22 Score=181.75 Aligned_cols=146 Identities=27% Similarity=0.429 Sum_probs=125.4
Q ss_pred cceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEeecCCC
Q 006706 413 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPES 491 (634)
Q Consensus 413 ~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~-~g~i~v~~~~~~~~~ 491 (634)
+.+++++.+++++++..++..+..+++.+.++.+... ..+.+|+..+.+++.||++||+||++ .+.+.+.+...++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~-- 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT-- 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS-CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSS--
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC-cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCC--
Confidence 4568999999999999999999999999999887553 34778999999999999999999995 4666666654332
Q ss_pred CCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHH-HhCCEEEEEec
Q 006706 492 LSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN-LMGGHIWLDSE 570 (634)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~-~~gG~i~v~s~ 570 (634)
.+.|+|+|+|+|++++..+++|++|++++. .|+|+||++|+++++ .|||++++++.
T Consensus 79 ------------------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-----~g~GlGL~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 79 ------------------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp ------------------EEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHHHHHHHTTTSCEEEEEEE
T ss_pred ------------------EEEEEEEeCCCCcCHHHHHhHhhhhccCCC-----CCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 499999999999999999999999997653 478999999999999 99999999998
Q ss_pred CCCCceEEEEEEEecC
Q 006706 571 GLDKGSTVTFLVKLGI 586 (634)
Q Consensus 571 ~~g~Gt~f~i~lP~~~ 586 (634)
+ +||+|++.||...
T Consensus 136 -~-~g~~~~i~lP~~~ 149 (152)
T 3a0y_A 136 -E-NGVVFIFEIPKTP 149 (152)
T ss_dssp -T-TEEEEEEEEESCC
T ss_pred -C-CCEEEEEEeCCCC
Confidence 4 5999999999753
No 19
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=1.8e-22 Score=184.06 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=108.5
Q ss_pred cccceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCC--CCcEEEEEEeec
Q 006706 411 ELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK--EGYVSIIASVAK 488 (634)
Q Consensus 411 ~l~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~--~g~i~v~~~~~~ 488 (634)
++..+++++.+++++++..+... ..+++.+.++.+...+. +.+|+..|.+++.||++||+||+. .+.+.+.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 34567999999999999999887 67889999888776654 677999999999999999999997 566666665543
Q ss_pred CCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEE
Q 006706 489 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLD 568 (634)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~ 568 (634)
... ........++.|+|+|+|+||+++.++++|++|++++. .|+|+||++|+++++.|||+++++
T Consensus 80 ~~~----------~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-----~g~GlGL~i~~~~~~~~gG~l~i~ 144 (160)
T 1r62_A 80 QLT----------LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-----GGTGLGLSIARNLIDQHSGKIEFT 144 (160)
T ss_dssp EEE----------ETTEEEEEEEEEEEEEECTTC-------------------------CHHHHHHHHHHHHTTCEEEEE
T ss_pred ccc----------ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-----CCCccCHHHHHHHHHHCCCeEEEE
Confidence 210 00001112589999999999999999999999998653 478999999999999999999999
Q ss_pred ecCCCCceEEEEEEEec
Q 006706 569 SEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 569 s~~~g~Gt~f~i~lP~~ 585 (634)
+. +++ |+|++.||+.
T Consensus 145 s~-~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 145 SW-PGH-TEFSVYLPIR 159 (160)
T ss_dssp EE-TTE-EEEEEEEEEE
T ss_pred eC-CCC-EEEEEEEecc
Confidence 98 665 9999999974
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.88 E-value=7.5e-23 Score=192.30 Aligned_cols=151 Identities=20% Similarity=0.324 Sum_probs=123.6
Q ss_pred ceeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcC-------------CCCcE
Q 006706 414 NGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFT-------------KEGYV 480 (634)
Q Consensus 414 ~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~-------------~~g~i 480 (634)
.+++++.++++++...++..+..+++.+.++++.+.......+...+.+++.||++||+||+ ..+.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I 81 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTL 81 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeE
Confidence 35899999999999999999998999988888765433222344556667999999999996 34556
Q ss_pred EEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh------------------------hhhhccccc
Q 006706 481 SIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------------------------PLLFTKFAQ 536 (634)
Q Consensus 481 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------------------------~~if~~f~~ 536 (634)
.+.+...++ ++.|+|+|+|+||+++.+ +++|+||++
T Consensus 82 ~I~~~~~~~--------------------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~ 141 (189)
T 1i58_A 82 ILSARHEGN--------------------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFS 141 (189)
T ss_dssp EEEEEEETT--------------------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCS
T ss_pred EEEEEecCC--------------------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccc
Confidence 666655433 499999999999999876 899999999
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEec
Q 006706 537 SRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLG 585 (634)
Q Consensus 537 ~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~ 585 (634)
++.......|+|+||++|+++++.|||+|+++|. +++||+|++.||+.
T Consensus 142 ~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~-~~~Gt~~~i~lPl~ 189 (189)
T 1i58_A 142 TKEKVSEVSGRGVGMDVVKNVVESLNGSISIESE-KDKGTKVTIRLPLT 189 (189)
T ss_dssp HHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECC
T ss_pred ccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeC-CCCceEEEEEEeCC
Confidence 7654333458899999999999999999999998 89999999999973
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.83 E-value=5.6e-20 Score=160.75 Aligned_cols=125 Identities=16% Similarity=0.156 Sum_probs=100.9
Q ss_pred eeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCC
Q 006706 417 FNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWR 496 (634)
Q Consensus 417 ~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~ 496 (634)
+++.+.++.+... ++.+++.+.++.+.+.+.....++..+.+++.|+++||+||++++.+.+.+...++
T Consensus 2 v~l~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~~------- 70 (128)
T 3ehg_A 2 IRLKDELINIKQI----LEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLWK------- 70 (128)
T ss_dssp CCHHHHHHHHHHH----HHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT-------
T ss_pred ccHHHHHHHHHHH----HHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeCC-------
Confidence 3455555555544 44678888887765554445567889999999999999999988888888766543
Q ss_pred CCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCce
Q 006706 497 PPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGS 576 (634)
Q Consensus 497 ~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt 576 (634)
.+.++|+|||+||+++.. .|+|+||++||++++.|||+++++|. + ||
T Consensus 71 -------------~~~i~V~D~G~Gi~~~~~-----------------~g~GlGL~~~~~~~~~~gG~i~~~s~-~--Gt 117 (128)
T 3ehg_A 71 -------------EVVITVSDDGTFKGEENS-----------------FSKGHGLLGMRERLEFANGSLHIDTE-N--GT 117 (128)
T ss_dssp -------------EEEEEEEESSCCCSCSSC-----------------CCTTSHHHHHHHHHHHTTCEEEEECS-S--SE
T ss_pred -------------EEEEEEEECCcCcCcccC-----------------CCCCccHHHHHHHHHHcCCEEEEEeC-C--CE
Confidence 399999999999998754 36799999999999999999999998 5 99
Q ss_pred EEEEEEEec
Q 006706 577 TVTFLVKLG 585 (634)
Q Consensus 577 ~f~i~lP~~ 585 (634)
+|+++||+.
T Consensus 118 ~~~i~lP~~ 126 (128)
T 3ehg_A 118 KLTMAIPNN 126 (128)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEecC
Confidence 999999975
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.80 E-value=7.2e-19 Score=153.92 Aligned_cols=125 Identities=19% Similarity=0.244 Sum_probs=104.3
Q ss_pred eeeeHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCC
Q 006706 415 GPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSD 494 (634)
Q Consensus 415 ~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~ 494 (634)
+.+++.++++++...+ ..+++.++++++.+.+.....|+..+.+++.||++||+||++++.+.+.+...+
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~~~------ 72 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKVDD------ 72 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEESS------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEcC------
Confidence 4678899998888877 467888888877665544445688999999999999999998887777765432
Q ss_pred CCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCC-
Q 006706 495 WRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLD- 573 (634)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g- 573 (634)
. +.++|+|+|+|++++. +|+||++||++++.|||++++++. ++
T Consensus 73 --------------~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~~~~~~~~gG~i~~~~~-~~~ 116 (129)
T 3zxo_A 73 --------------D-LCIEVTDNGRGMPDEF--------------------TGSGLTNLRQRAEQAGGEFTLASM-PGA 116 (129)
T ss_dssp --------------E-EEEEEEECCCCCTTTT--------------------CSHHHHHHHHHHHHTTCEEEEEEC-TTT
T ss_pred --------------C-EEEEEecCCCCCCccc--------------------CCcCHHHHHHHHHHcCCEEEEeeC-CCC
Confidence 2 7899999999998764 499999999999999999999998 77
Q ss_pred CceEEEEEEEec
Q 006706 574 KGSTVTFLVKLG 585 (634)
Q Consensus 574 ~Gt~f~i~lP~~ 585 (634)
+|++|+++||+.
T Consensus 117 ~G~~~~i~lP~~ 128 (129)
T 3zxo_A 117 SGTVLRWSAPLS 128 (129)
T ss_dssp CCEEEEEEEESC
T ss_pred CcEEEEEEecCC
Confidence 899999999974
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=4.8e-18 Score=147.54 Aligned_cols=122 Identities=22% Similarity=0.250 Sum_probs=99.9
Q ss_pred eHHHHHHHHHHHHHHhhhcCCceEEEEeCCCCCceEEccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCC
Q 006706 418 NLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRP 497 (634)
Q Consensus 418 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~ 497 (634)
++.+.++++...+ ...++.+.++++.+.+.....++..+.+++.|+++||+||++++.+.+.+...+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~--------- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVED--------- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEEE---------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeCC---------
Confidence 4566666666665 467788888776665544444688999999999999999999887777765432
Q ss_pred CCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceE
Q 006706 498 PEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGST 577 (634)
Q Consensus 498 ~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~ 577 (634)
. +.++|+|+|+|++++. .|+||++|+++++.|||++++++. +++|++
T Consensus 69 -----------~-~~i~v~D~G~gi~~~~--------------------~GlGL~~~~~~~~~~gG~i~~~~~-~~~G~~ 115 (124)
T 3zxq_A 69 -----------D-VRVEVVDDGVGISGDI--------------------TESGLRNLRQRADDAGGEFTVENM-PTGGTL 115 (124)
T ss_dssp -----------E-EEEEEEECCCSSCGGG--------------------SHHHHHHHHHHHHHHTCEEEEEEC-TTSSEE
T ss_pred -----------C-EEEEEEECCCCCCccc--------------------cccCHHHHHHHHHHhCCEEEEEEc-CCCcEE
Confidence 2 7899999999999763 399999999999999999999998 888999
Q ss_pred EEEEEEec
Q 006706 578 VTFLVKLG 585 (634)
Q Consensus 578 f~i~lP~~ 585 (634)
|+++||+.
T Consensus 116 ~~i~lP~~ 123 (124)
T 3zxq_A 116 LRWSAPLR 123 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999975
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.66 E-value=2.8e-16 Score=140.39 Aligned_cols=104 Identities=24% Similarity=0.382 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhh
Q 006706 455 GDEKRLMQTILNIVGNAVKFTKE----GYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLL 530 (634)
Q Consensus 455 ~d~~~l~~vl~nLl~NAik~~~~----g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~i 530 (634)
.|...+.+++.||++||++|+.. +.+.+.+...++ .+.|+|+|+|+||+ .++++
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~--------------------~~~i~V~D~G~g~~--~~~~~ 92 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG--------------------VVHLTVRDEGVGIP--DIEEA 92 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT--------------------EEEEEEEECSSCCS--CHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC--------------------EEEEEEEECCCCcC--hHHHh
Confidence 47889999999999999999965 666666655443 39999999999999 89999
Q ss_pred hccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecCCC
Q 006706 531 FTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 588 (634)
Q Consensus 531 f~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~ 588 (634)
|++|++++.. ..|.|+||++|+++++ ++++++. +++||+|++.+|....+
T Consensus 93 ~~~~~~~~~~---~~~~GlGL~iv~~~~~----~i~~~~~-~~~Gt~v~~~lp~~~~~ 142 (145)
T 1th8_A 93 RQPLFTTKPE---LERSGMGFTIMENFMD----EVIVESE-VNKGTTVYLKKHGIHHH 142 (145)
T ss_dssp TCCC----------CCCSCHHHHHHHHSS----EEEEEEE-TTTEEEEEEEECCC---
T ss_pred hcccccCCCC---CCCCcchHHHHHHHHh----eEEEEeC-CCCCEEEEEEEeccccc
Confidence 9999987652 2478999999999988 8999998 89999999999976544
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.60 E-value=3.2e-15 Score=157.60 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=95.2
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006706 453 AVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 453 v~~d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
..+|+..|.|++.||++||++|+..+ .+.+.+...... ..++.|+|+|||+||++++++
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~ 88 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVP 88 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGHH
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCc-----------------CcEEEEEEEECCCCCCHHHHH
Confidence 44578999999999999999999765 466666554311 014899999999999999999
Q ss_pred hhhccccccCCCC--CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCC
Q 006706 529 LLFTKFAQSRGSS--CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGIC 587 (634)
Q Consensus 529 ~if~~f~~~~~~~--~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt-~f~i~lP~~~~ 587 (634)
++|++|+++.... ...+|+|+||++|+.+++.|||+ ++++|. +++|+ .|++.+|++..
T Consensus 89 ~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~-~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 89 NAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp HHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEECTT
T ss_pred HHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEe-cCCCceEEEEEEecccc
Confidence 9999997655432 22358999999999999999999 999998 78887 99999998754
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.59 E-value=2.5e-15 Score=160.05 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
|+..|.|++.||++||++|+..+ .+.+.+...... ...+.|+|+|||+||+++.++++|
T Consensus 28 d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~-----------------~~~~~I~V~DnG~GI~~e~l~~iF 90 (530)
T 2zbk_B 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDA-----------------RQIYKVNVVDNGIGIPPQEVPNAF 90 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETT-----------------TTEEEEEEECCSCCCCGGGSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCc-----------------CceEEEEEEECCCCCCHHHHHHHh
Confidence 45899999999999999999875 466666554311 014899999999999999999999
Q ss_pred ccccccCCCC--CCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCce-EEEEEEEecCC
Q 006706 532 TKFAQSRGSS--CQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGS-TVTFLVKLGIC 587 (634)
Q Consensus 532 ~~f~~~~~~~--~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt-~f~i~lP~~~~ 587 (634)
++|+++.... ...+|+|+||++|+.+++.|||+ ++++|. +++|+ .|++.||++..
T Consensus 91 ~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~-~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 91 GRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETS-PVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp TSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEE-CTTCSEEEEEEEEEETT
T ss_pred ccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEe-cCCCeEEEEEEEEeccc
Confidence 9997665432 23358999999999999999999 999998 78787 99999998754
No 27
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.49 E-value=3.9e-13 Score=125.03 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=133.2
Q ss_pred HHHHHHHHHhhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccc
Q 006706 125 RADELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIG 204 (634)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 204 (634)
...++++..+++++++++++.++++++.+.+++|++++++.+++.+.+.+++++|.|++.+++.. ......+.......
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~L~~is~~l~~~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~-~~~~~~~~~~~~~~ 89 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMSLLTVLVQVTQASNSLEAILTPIATAFAESFAVNACILQMLEGQTL-STIQGFYSQQGTVN 89 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEE-EEEEEEEESSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCce-eeeeeeccccCccC
Confidence 45677888888999999999999999999999999999999999999999999999999954432 22233233222222
Q ss_pred cccccCChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCC
Q 006706 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG 284 (634)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~ 284 (634)
..++ ..+.+.+++.+++++.+++...++.+.........+..+.+.+||.. ++..+|++.+.+..
T Consensus 90 ~~~~-~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPL~~--------------~~~~~GvL~l~~~~ 154 (184)
T 3p01_A 90 NWLN-QDPLTNEAIATGQIQVAANIAKDPKLASISQYQDNGIQSHVVIPITY--------------RNEMLGVLSLQWQQ 154 (184)
T ss_dssp CCGG-GCHHHHHHHHHCSCEEESCGGGCHHHHTCHHHHHHTCCEEEEEEEEE--------------TTEEEEEEEEEESS
T ss_pred cccC-CCcHHHHHHhhCCeEEEeccccCccccchhHHHHhCccEEEEEEEEE--------------CCEEEEEEEeCcCC
Confidence 2244 47888999999999999988777655421111123567788888753 34468888888888
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHH
Q 006706 285 GRKWRDHELELIDVVADQVAVALSHAAI 312 (634)
Q Consensus 285 ~~~~~~~e~~ll~~~a~~~a~al~~a~l 312 (634)
++.|+++|+++++.+|+|+++||++++.
T Consensus 155 ~~~f~~~d~~ll~~lA~q~aiAi~nAr~ 182 (184)
T 3p01_A 155 PISLREDELTLIHLSAQLVAIALTSSRC 182 (184)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998863
No 28
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.40 E-value=2.8e-13 Score=146.23 Aligned_cols=115 Identities=18% Similarity=0.329 Sum_probs=87.4
Q ss_pred EEccHHHHHHHHHHHHHHHhhcCCC-C---cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChh
Q 006706 453 AVGDEKRLMQTILNIVGNAVKFTKE-G---YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 453 v~~d~~~l~~vl~nLl~NAik~~~~-g---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~ 528 (634)
+.+|+..|.+++.||++||++|+.. | .+.+.+.....+ .+.|+|+|||+||+++.++
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~-------------------~~~I~V~DnG~GIp~e~l~ 91 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPD-------------------YVTVIIEDNGPGIVREQIP 91 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTT-------------------EEEEEEECCSCCCCGGGHH
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCc-------------------EEEEEEEECCCCCCHHHHH
Confidence 5579999999999999999999874 4 455555443312 4899999999999999999
Q ss_pred hhhccccccCCC---CCCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCc-eEEEEEEEecCC
Q 006706 529 LLFTKFAQSRGS---SCQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKG-STVTFLVKLGIC 587 (634)
Q Consensus 529 ~if~~f~~~~~~---~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~G-t~f~i~lP~~~~ 587 (634)
++|++|+++..- ....+|.|+||++|+.+++.|||+ |+++|. .++| +.+++++|++..
T Consensus 92 ~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~-~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 92 KVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSK-TSPTAPAHYYELMINTS 154 (621)
T ss_dssp HHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEE-CSSSSCEEEEECCCCSS
T ss_pred HHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEee-ccCCccceEEEEecchh
Confidence 999888654321 112358899999999999999999 899998 5543 455666665544
No 29
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=99.39 E-value=1.3e-12 Score=120.47 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=129.9
Q ss_pred hhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChh
Q 006706 134 GLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPI 213 (634)
Q Consensus 134 ~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (634)
++++++++.+..++++++.+.+..|++++++.+++.+.+.++++.|+|++.++++..+....++.........++.+.+.
T Consensus 5 ~~~~~~~~~l~~l~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (181)
T 3e0y_A 5 QRANREHLEIISLEEISMLVSSDFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEVVLAATHGFDPAFIGKIRIKIGDGI 84 (181)
T ss_dssp ------CTTCCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEEEEEEEESSCGGGTTTCEEETTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCceEEEecCCCHHHhccccccCCCCe
Confidence 34566777888999999999999999999999999999999999999999998877665556655544455567778889
Q ss_pred HHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhh
Q 006706 214 VTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHEL 293 (634)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~ 293 (634)
++.++.+++++.+++....+.+.........+..+.+++||.. ++..+|++.+.+..++.|++++.
T Consensus 85 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~ 150 (181)
T 3e0y_A 85 TGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGD--------------KKEVYGVINLNTTSIRSFHEDEI 150 (181)
T ss_dssp HHHHHHHCCCEEEEEECCCCCC---------CEEEEEEEEEEC--------------SSCEEEEEEEEESSCCCCCHHHH
T ss_pred eeehhhcCCeEEecCcccCccccccccccccCcceEEEEEEEe--------------CCeEEEEEEEeeCCCCCCCHHHH
Confidence 9999999999999877665544322222334567777888743 34468888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 294 ELIDVVADQVAVALSHAAILEDSM 317 (634)
Q Consensus 294 ~ll~~~a~~~a~al~~a~l~~~~~ 317 (634)
+++..+|.++++++.+++++++.+
T Consensus 151 ~~l~~la~~~a~al~~~~~~~~~~ 174 (181)
T 3e0y_A 151 YFVSIIANLILTAIKLRQQVASSR 174 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776543
No 30
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=99.36 E-value=9.9e-12 Score=113.42 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=132.3
Q ss_pred HHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecc--ccccccccccCChhHHHH
Q 006706 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN--QIQIGSSVPINLPIVTDV 217 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 217 (634)
.+.++.++++++.+.++.|++++++.+++.+.+.++++.|+||+.++++..+......+. .......++.+.+.++++
T Consensus 4 l~~L~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3trc_A 4 MNMLKILRQITQEVNAAPNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGEGLIGLV 83 (171)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCCChhhHH
Confidence 345778999999999999999999999999999999999999999998876666655443 233334677788999999
Q ss_pred hccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHH
Q 006706 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELID 297 (634)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~ 297 (634)
+.+++++.+++...+..+.........+..+.+.+||.. ++..+|++.+.+..++.|++++.++++
T Consensus 84 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~~~~~~~~~f~~~d~~~l~ 149 (171)
T 3trc_A 84 GEREEPINLADAPLHPAYKHRPELGEEDYHGFLGIPIIE--------------QGELLGILVIQQLESHHFAEEEEAFCV 149 (171)
T ss_dssp HHHTSCEEESCGGGSTTCCCCGGGCCCCCCEEEEEEEEE--------------TTEEEEEEEEEESSSCCCCHHHHHHHH
T ss_pred HhcCCeEEeCCCCCCCcccccccCCcccccEEEEEeEEE--------------CCEEEEEEEEeecCCCCCCHHHHHHHH
Confidence 999999999887776655433332345667788888743 345688998888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006706 298 VVADQVAVALSHAAILEDSM 317 (634)
Q Consensus 298 ~~a~~~a~al~~a~l~~~~~ 317 (634)
.++.++++++++++++++.+
T Consensus 150 ~la~~~a~ai~~a~l~~~l~ 169 (171)
T 3trc_A 150 TLAIHLAAEIAHARAKGALE 169 (171)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 31
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=99.34 E-value=5.9e-12 Score=117.15 Aligned_cols=171 Identities=11% Similarity=0.095 Sum_probs=128.9
Q ss_pred hhhchHHHhHHHHHHHHHHhcc-cChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEE-eecc--------ccccc
Q 006706 135 LILTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNN--------QIQIG 204 (634)
Q Consensus 135 ~~~~~~~~~~~l~~l~~~i~~~-ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~--------~~~~~ 204 (634)
.++++.++.+.+.++++.+.++ +|++++++.++..+.+.++++.|+|+++++++..+.... ..+. .....
T Consensus 4 ~l~~~~~~~~~L~~~~~~l~~~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (189)
T 2e4s_A 4 GSSGQTELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKE 83 (189)
T ss_dssp ----CHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEEEEEEEETTEEEEEECCC
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCEEEEEEeccCccccccccccCCcc
Confidence 4567778888999999999887 599999999999999999999999999998877655432 1111 12344
Q ss_pred cccccCChhHHHHhccCCeEEcCCCCchhhhhhc-ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCC
Q 006706 205 SSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD 283 (634)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~ 283 (634)
..++.+.+.+++++.+++++.+++...+..+... ......+..+.+++||. .++..+|++.+.+.
T Consensus 84 ~~~~~~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~iGvl~l~~~ 149 (189)
T 2e4s_A 84 IRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIV--------------SRGSVIGVVQMVNK 149 (189)
T ss_dssp CEEETTSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEE--------------ETTEEEEEEEEEEE
T ss_pred eEeeCCCcHHHHHHHhCCEEEecCCCcCcccChhhccccCCccceEEEEEec--------------cCCeEEEEEEEEeC
Confidence 5667788999999999999999987766554321 11122445677788874 34456888888777
Q ss_pred CCC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 284 GGR-KWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 284 ~~~-~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
.++ .|++++++++..+|.+++++|++++++++.++.
T Consensus 150 ~~~~~f~~~d~~ll~~la~~~a~ai~na~l~~~~~~~ 186 (189)
T 2e4s_A 150 ISGSAFSKTDENNFKMFAVFCALALHCANMYHRIRHS 186 (189)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 999999999999999999999999998776554
No 32
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=99.32 E-value=1.2e-11 Score=113.65 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=125.3
Q ss_pred HHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEE-Eeeccc---cccccccccCChhHH
Q 006706 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTLNNQ---IQIGSSVPINLPIVT 215 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~ 215 (634)
+..++.++++++.+.+++|++++++.+++.+.+.+++++|+|++.++++..+... ..+... ......++...+.++
T Consensus 2 n~~l~ll~~i~~~l~~~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (177)
T 3k2n_A 2 NAALKLMQYIGDAIGTIRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTWLE 81 (177)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSGGG
T ss_pred hHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccHHH
Confidence 5667889999999999999999999999999999999999999999988776553 121111 122345566788889
Q ss_pred HHhccCCeEEcCCCCchhhhhhc-----ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccch
Q 006706 216 DVFNSAQAMRLPYNCPLARIRLL-----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (634)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~ 290 (634)
+++.+++++.++.......+... ......+..+.+.+||.. ++..+|++.+.+..++.|++
T Consensus 82 ~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~--------------~~~~iGvL~l~~~~~~~f~~ 147 (177)
T 3k2n_A 82 GHLDDRTVTVASIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRS--------------GGRVIGFLSFVSAEEKLWSD 147 (177)
T ss_dssp GGTTCCSCEEEETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEE--------------TTEEEEEEEEEESSCCCCCH
T ss_pred HHhccCCceEechhhcccccCCcchhHHHHHHHcCceEEEEEEEEE--------------CCEEEEEEEEEECCCCCCCH
Confidence 99999999888433323322211 011223456777888643 34579999999888889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 291 HELELIDVVADQVAVALSHAAILEDSMR 318 (634)
Q Consensus 291 ~e~~ll~~~a~~~a~al~~a~l~~~~~~ 318 (634)
+++++++.+|+++++||+|++++++.++
T Consensus 148 ~d~~ll~~lA~~~a~Ai~na~l~~~l~~ 175 (177)
T 3k2n_A 148 GDKSLLSGVSSSIAIAVSNALAYEELRQ 175 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999877643
No 33
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.31 E-value=1.6e-11 Score=114.09 Aligned_cols=165 Identities=12% Similarity=0.103 Sum_probs=122.2
Q ss_pred HHHhHHHHHHHHHH-hcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccc---------ccccccccc
Q 006706 140 EETGRHVRMLTHEI-RSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---------IQIGSSVPI 209 (634)
Q Consensus 140 ~~~~~~l~~l~~~i-~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 209 (634)
.+..+.|.++++.+ .+++|++++++.+++.+.+.+++++|+||+.|+++..+......... ......+|.
T Consensus 9 ~e~~~~Ll~~~~~i~~~~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2zmf_A 9 TELNDFLLDVSKTYFDNIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEET
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCC
Confidence 33445678888875 67799999999999999999999999999999998876654332211 122234567
Q ss_pred CChhHHHHhccCCeEEcCCCCchhhhhhc-ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEe-cCCCCCc
Q 006706 210 NLPIVTDVFNSAQAMRLPYNCPLARIRLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRK 287 (634)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~-~~~~~~~ 287 (634)
+.+..++++.+++++.+++...+..+... ......+.++.+++|+.. ++..+|++.+ ....++.
T Consensus 89 ~~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~--------------~~~~~Gvl~l~~~~~~~~ 154 (189)
T 2zmf_A 89 EKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVS--------------RGSVIGVVQMVNKISGSA 154 (189)
T ss_dssp TSHHHHHHHHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEE--------------TTEEEEEEEEEEETTSSS
T ss_pred CccHHHHHHHhCCeEEEecccccccccccchhhcccccceEEEeeecc--------------cCceeeEEEEEEcCCCCC
Confidence 88889999999999999887765544321 122233456677888743 2334666654 5666789
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 288 WRDHELELIDVVADQVAVALSHAAILEDSMR 318 (634)
Q Consensus 288 ~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~ 318 (634)
|+++++++++.+|.|+++||+|++++++.++
T Consensus 155 f~~~d~~ll~~lA~q~a~Ai~na~l~~~lr~ 185 (189)
T 2zmf_A 155 FSKTDENNFKMFAVFCALALHCANMYHRIRH 185 (189)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976543
No 34
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.26 E-value=3.9e-11 Score=109.64 Aligned_cols=155 Identities=10% Similarity=0.101 Sum_probs=101.3
Q ss_pred HHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccccc--ccccccCC--hhHHHHhccCCeE
Q 006706 149 LTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTDVFNSAQAM 224 (634)
Q Consensus 149 l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~ 224 (634)
.+..|++++|++++++++++++++.+++|+|.||..++++..........++.+. +..+|... +.....+..++++
T Consensus 2 ~a~~Ir~sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~ 81 (171)
T 4glq_A 2 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ 81 (171)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCE
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEE
Confidence 5678999999999999999999999999999999999987655554444443332 23333221 1235678888888
Q ss_pred EcCCCCchhhhh-hcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecC-CCCCccchhhhHHHHHHHHH
Q 006706 225 RLPYNCPLARIR-LLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVADQ 302 (634)
Q Consensus 225 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a~~ 302 (634)
.+++........ ........+.++.+.+|+... | ...|++.+.. ..+|.|+++|++++..+|+|
T Consensus 82 ~I~Dv~~~~~~~~~~~~l~~~~v~S~L~vPi~~~-------------~-~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~q 147 (171)
T 4glq_A 82 ATTDIFKAGLTECHLNQLRPLKVRANLVVPMVID-------------D-QLFGLLIAHQASEPRQWQEIEIDQFSELAST 147 (171)
T ss_dssp EESCGGGTTCCHHHHHHHGGGTEEEEEEEEEEET-------------T-EEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred EEcCcCcCCCCHHHHHHHHhcCCcEEEEEEEEEC-------------C-EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 888765421100 001112345667777776433 2 3466666655 78999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006706 303 VAVALSHAAILEDSM 317 (634)
Q Consensus 303 ~a~al~~a~l~~~~~ 317 (634)
+++||.+++++++.+
T Consensus 148 l~iAi~qa~l~~~~~ 162 (171)
T 4glq_A 148 GSLVLERLHFLEQTI 162 (171)
T ss_dssp HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999986643
No 35
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=99.24 E-value=1.2e-10 Score=105.70 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=127.2
Q ss_pred chHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccc--cccccccccCChhHH
Q 006706 138 TQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIGSSVPINLPIVT 215 (634)
Q Consensus 138 ~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 215 (634)
.+++.++.++++++.+.+..+++++++.+++.+.+.++++.|+|++.++++..+......+.. ......++.+.+.+.
T Consensus 4 ~~~~~l~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 83 (171)
T 3ci6_A 4 MSNMQLDTLRRIVQEINSSVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSEGLVG 83 (171)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccCCeeh
Confidence 456778899999999999999999999999999999999999999999887776665555432 233446677788999
Q ss_pred HHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHH
Q 006706 216 DVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELEL 295 (634)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~l 295 (634)
.++.+++++.+++......+.........+....+.+|+. .++..+|++.+....++.|++++.++
T Consensus 84 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~f~~~~~~~ 149 (171)
T 3ci6_A 84 LVGQREEIVNLENASKHERFAYLPETGEEIYNSFLGVPVM--------------YRRKVMGVLVVQNKQPQDFSEAAESF 149 (171)
T ss_dssp HHHHHTSCEEESSGGGSTTC---------CCCEEEEEEEE--------------ETTEEEEEEEEEESSCCCCCHHHHHH
T ss_pred hhhccCceEEecCCCcCcchhccccccccccceEEEEeEE--------------ECCEEEEEEEEecCCCCCCCHHHHHH
Confidence 9999999999987766554432222123345667777764 34456888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006706 296 IDVVADQVAVALSHAAILED 315 (634)
Q Consensus 296 l~~~a~~~a~al~~a~l~~~ 315 (634)
++.++.+++.++++++++++
T Consensus 150 l~~la~~~a~al~~~~l~~~ 169 (171)
T 3ci6_A 150 LVTLCAQLSGVIAHAHAVGN 169 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 36
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=99.24 E-value=3.2e-11 Score=109.47 Aligned_cols=158 Identities=13% Similarity=0.227 Sum_probs=106.6
Q ss_pred cccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecc-ccccccccccCChhHHHHhccCCeEEcCCCCchh
Q 006706 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-QIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLA 233 (634)
Q Consensus 155 ~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (634)
..++++++++.++..+.+.++++.+++++++++...+........ ..+.+..+|...+.+..++.+++++..+......
T Consensus 2 ~~~sldevL~~v~~~l~~~~~~d~~~l~L~~~~~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~~~~~~ 81 (165)
T 3o5y_A 2 NAMSLDDIINNMIDKLKLLVHFDRISFLLLANETLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSLTDTQD 81 (165)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCSEEEEEEEETTEEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEESCCTTC
T ss_pred CCCCHHHHHHHHHHHHHHhcCcceEEEEEEECCEEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcCccccc
Confidence 357899999999999999999999999999876544433322211 1224556777788999999999999875444332
Q ss_pred hhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 006706 234 RIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 313 (634)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~ 313 (634)
.+.........+.++.+++||... +..+|++.+.+..++.|+++++++++.+|+|+|++|+||++|
T Consensus 82 ~~~~~~~~~~~~~~S~l~vPL~~~--------------~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai~na~ly 147 (165)
T 3o5y_A 82 NFYEKQYLAILDLKSILVIPIYSK--------------NKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSIENVELY 147 (165)
T ss_dssp CCTTHHHHHTTTCCEEEEEEEECS--------------SCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred ccccchHHHhhCCCEEEEeCeeEC--------------CEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222112223456788889997543 346899999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006706 314 EDSMRARNQLMEQ 326 (634)
Q Consensus 314 ~~~~~~~~~l~~~ 326 (634)
++.++.++++++.
T Consensus 148 ~~~~~~~~~~~~~ 160 (165)
T 3o5y_A 148 GQVLRSKQEWEDT 160 (165)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 9887776665543
No 37
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=99.17 E-value=4e-10 Score=102.35 Aligned_cols=158 Identities=18% Similarity=0.248 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccc--cccccccc--CChhHHHHhc
Q 006706 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI--QIGSSVPI--NLPIVTDVFN 219 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~ 219 (634)
+.++++++.+.++.|++++++.+++.+.+.+++++|+|++.++++..+......+... .....++. +.+.+.+++.
T Consensus 2 ~~L~~i~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (169)
T 3oov_A 2 NAFHQISSRIQKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFT 81 (169)
T ss_dssp ----CHHHHHHHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHH
T ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHh
Confidence 4678899999999999999999999999999999999999999888777776665432 23445555 5788899999
Q ss_pred cCCeEEcCCCCchhhhhhc----ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCC-CccchhhhH
Q 006706 220 SAQAMRLPYNCPLARIRLL----VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELE 294 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ 294 (634)
+++++.+++.......... ......+....+.+||. .++..+|++.+.+..+ +.|++++++
T Consensus 82 ~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~--------------~~~~~iGvl~~~~~~~~~~f~~~d~~ 147 (169)
T 3oov_A 82 DRQVYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIV--------------VKGEAIGVFAVDNRSSRRSLNDTDVD 147 (169)
T ss_dssp HTCCEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEE--------------ETTEEEEEEEEECTTSSSCCCHHHHH
T ss_pred cCCCEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEE--------------eCCcEEEEEEEEccccCCCCCHHHHH
Confidence 9999999877765543211 11122345667777764 3345688888887654 459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006706 295 LIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 295 ll~~~a~~~a~al~~a~l~~~ 315 (634)
+++.++.++++++++++++++
T Consensus 148 ~l~~~a~~~a~ai~na~l~~~ 168 (169)
T 3oov_A 148 TIKLFADQASSAIVRINLLKA 168 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998763
No 38
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.11 E-value=2.1e-10 Score=108.66 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=91.1
Q ss_pred hhhhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecc-c--cccccccccC
Q 006706 134 GLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-Q--IQIGSSVPIN 210 (634)
Q Consensus 134 ~~~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 210 (634)
..++++.++.+.++++++.+++++|++++++.+++.+.+.+++++|.|++.++++........... . ...+..++..
T Consensus 6 ~aL~~~~~~~~~L~~i~~~i~~~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (208)
T 2lb5_A 6 WAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAG 85 (208)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGG
T ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChh
Confidence 456677788889999999999999999999999999999999999999999987665444433322 1 1122222221
Q ss_pred C--hhHHH------------------------HhccCCeEEcCCCCchhhhhh-cccccCCCCceEEeeccccccCcccc
Q 006706 211 L--PIVTD------------------------VFNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQIN 263 (634)
Q Consensus 211 ~--~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~ 263 (634)
+ ..... +..+++++.+++......... .......+.++.+.+|+..
T Consensus 86 ~~p~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~------- 158 (208)
T 2lb5_A 86 DIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMH------- 158 (208)
T ss_dssp GCCSHHHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEE-------
T ss_pred hCcHHHHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEE-------
Confidence 1 01111 233344444443322211000 0001124556777777643
Q ss_pred CCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006706 264 DWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 264 ~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
++..+|++.+.+..++.|+++|+++++.+|.++++|+.++++++.
T Consensus 159 -------~~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a~l~~~ 203 (208)
T 2lb5_A 159 -------HQELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELSLH 203 (208)
T ss_dssp -------TTEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -------CCEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344688888888889999999999999999999999999987753
No 39
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.08 E-value=1.7e-09 Score=113.31 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=130.4
Q ss_pred hhchHHHhHHHHHHHHHHhc-ccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhH
Q 006706 136 ILTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIV 214 (634)
Q Consensus 136 ~~~~~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (634)
.+++.++.+.+.++++.+.. ..+++++++.++..+.+.+++++|.|++.++++..+...............++.+.+.+
T Consensus 191 ~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (398)
T 1ykd_A 191 ATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIGKGFA 270 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCCCchh
Confidence 34455667788999999999 99999999999999999999999999999998877766555333333344667788899
Q ss_pred HHHhccCCeEEcC-CCCchhhhhhc---ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCC------
Q 006706 215 TDVFNSAQAMRLP-YNCPLARIRLL---VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDG------ 284 (634)
Q Consensus 215 ~~~~~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~------ 284 (634)
+.++.+++++.++ +....+.+... ......+..+.+++||.. .++..+|++.+.+..
T Consensus 271 ~~v~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~~~~iGvl~l~~~~~~~~~~ 337 (398)
T 1ykd_A 271 GIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYRTCSLLCMPVFN-------------GDQELIGVTQLVNKKKTGEFP 337 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSTTCHHHHHHHHHHTCCCCCEEEEEEEC-------------SSSCEEEEEEEEEECCSSCCC
T ss_pred hHHhccCCeEEeccccccCcccCcccchhhhcCCeeeeEEEEeeec-------------CCCCEEEEEEEEecCCccccc
Confidence 9999999999998 77665544322 011123466788888742 233467888776655
Q ss_pred --------------CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 285 --------------GRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 285 --------------~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
++.|+++++++++.+|.++++||++++++++.++.
T Consensus 338 ~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na~l~~~~~~~ 386 (398)
T 1ykd_A 338 PYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNAQLFATVKQQ 386 (398)
T ss_dssp CCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999876544
No 40
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=99.06 E-value=1.3e-09 Score=97.13 Aligned_cols=134 Identities=20% Similarity=0.181 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHHHhhcCCceeEEEcccCCC----CeEEEE--EeeccccccccccccCChhHHHHhccCCeEEcCCCCc
Q 006706 158 DRHTILKTTLVELGRTLGLEECALWMPSRTG----LNLELS--YTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCP 231 (634)
Q Consensus 158 d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (634)
|++++|+.+++.+.+.++++.|+|+++++++ ..+... .+.......+..++.+.+.++.++.+++++.+++...
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~g~~g~v~~~g~~v~v~d~~~ 80 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQDNAIGQAFRDRAPRRLDVLDG 80 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSSSHHHHHHHHCCCEEESCCCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCCCHHHHHhhcCceEEecCccc
Confidence 5678999999999999999999999998764 444444 3333334456677888899999999999999998765
Q ss_pred hhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCC-CCCccchhhhHHHHHHHHHHHHHHHHH
Q 006706 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
++ +.++.+++||.. ++..+|++.+.+. .++.|++++++++..+|.|+++++.++
T Consensus 81 d~-----------~~~s~l~vPL~~--------------~~~~~GvL~l~~~~~~~~f~~~d~~ll~~lA~~aa~al~~a 135 (149)
T 2vjw_A 81 PG-----------LGGPALVLPLRA--------------TDTVAGVLVAVQGSGARPFTAEQLEMMTGFADQAAVAWQLA 135 (149)
T ss_dssp TS-----------CEEEEEEEEEEE--------------TTEEEEEEEEEEETTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-----------CCCeEEEEEEcc--------------CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43 456788888753 3446888888776 788999999999999999999999999
Q ss_pred HHHHHH
Q 006706 311 AILEDS 316 (634)
Q Consensus 311 ~l~~~~ 316 (634)
+.+++.
T Consensus 136 ~~~~~~ 141 (149)
T 2vjw_A 136 SSQRRM 141 (149)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 877553
No 41
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=99.04 E-value=8.9e-10 Score=101.55 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCC-eEEEEEeeccccc-cccccccCChhHHHHhccC
Q 006706 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL-NLELSYTLNNQIQ-IGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 221 (634)
..++++++.+.++.|++++++.+++.+.+.++++.|+|+++++++. .+....+...... .....+...+.+++++.++
T Consensus 3 ~~L~~i~~~l~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (181)
T 2qyb_A 3 AVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLSN 82 (181)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCCCchhhhhhcC
Confidence 3578899999999999999999999999999999999999955442 2233333333221 1223333567889999999
Q ss_pred CeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecC-CCCCccchhhhHHHHHHH
Q 006706 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVA 300 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a 300 (634)
+++.+++................+..+.+.+||...+. ..+|++.+.+ ..++.|++++++++..+|
T Consensus 83 ~~~~v~d~~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~-------------~~~GvL~l~~~~~~~~f~~~d~~lL~~la 149 (181)
T 2qyb_A 83 RLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGE-------------PPFGILSVFSRTIVGLFNEPFLNLLESLA 149 (181)
T ss_dssp SCEEESCGGGCSCHHHHHHHHHTTCCEEEEEEECCTTS-------------CCCEEEEEEESSCSSCCCHHHHHHHHHHH
T ss_pred CCEEecChhcCCchhhHHHHHhcCcceEEEEEEEeCCC-------------eEEEEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 99998876654432111111123456677788743332 2588888887 778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006706 301 DQVAVALSHAAILEDSM 317 (634)
Q Consensus 301 ~~~a~al~~a~l~~~~~ 317 (634)
.+++++|++++.+++..
T Consensus 150 ~~~a~al~~a~~~~~~~ 166 (181)
T 2qyb_A 150 GQLAQAVKIVTEMEAKE 166 (181)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999997655443
No 42
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=99.01 E-value=7.1e-10 Score=102.42 Aligned_cols=153 Identities=12% Similarity=0.173 Sum_probs=118.3
Q ss_pred HHhHHHHHHHHHHhccc-ChhHHHHHHHHHHHhhcCCceeEEEcccCCCC--eEEEE-Ee--ecc-------cccccccc
Q 006706 141 ETGRHVRMLTHEIRSTL-DRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLELS-YT--LNN-------QIQIGSSV 207 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~l-d~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~~~-~~--~~~-------~~~~~~~~ 207 (634)
+.++.+.++++.+.+++ |++++++.+++.+.+.+++++|+|+++++++. .+... .. .+. .......+
T Consensus 4 ~el~~L~eis~~l~~~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 4 EECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHHHTTSCSSSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 45678999999999999 99999999999999999999999999988754 33322 11 121 11233467
Q ss_pred ccCChhHHHHhccCCeEEcCCCCchhhhhhccc-ccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCC-
Q 006706 208 PINLPIVTDVFNSAQAMRLPYNCPLARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG- 285 (634)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~- 285 (634)
|.+.+.+++++.+++++.+++...++++..... ......++.+++||... +..+||+.+.+..+
T Consensus 84 ~~~~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~--------------~~viGVL~l~n~~~~ 149 (180)
T 3dba_A 84 PLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQG--------------KEVLAVVMALNKLNA 149 (180)
T ss_dssp CTTSSHHHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEET--------------TEEEEEEEEEEESSS
T ss_pred eCCCCHHHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccC--------------CEEEEEEEEEeCCCC
Confidence 788999999999999999999888776642211 12234678889997543 44688988877655
Q ss_pred CccchhhhHHHHHHHHHHHHHH
Q 006706 286 RKWRDHELELIDVVADQVAVAL 307 (634)
Q Consensus 286 ~~~~~~e~~ll~~~a~~~a~al 307 (634)
..|++++.++++.+|++++++|
T Consensus 150 ~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 150 SEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998
No 43
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=99.01 E-value=4.8e-09 Score=117.97 Aligned_cols=173 Identities=10% Similarity=0.068 Sum_probs=127.4
Q ss_pred hHHHhHHHHHHHHHHhc-ccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecc-ccccccccccCChhHHH
Q 006706 139 QEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNN-QIQIGSSVPINLPIVTD 216 (634)
Q Consensus 139 ~~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 216 (634)
+.++++.+.++++.+.+ ..+++++++.+++.+.+.+++++|+|++.+++........+... .......+|.+.+..++
T Consensus 176 ~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~~~l~~~~~~g~~~~~~~~~~~~~~~~gi~g~ 255 (691)
T 3ibj_A 176 LKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGH 255 (691)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEEEEEEEEECSSEEEEECCSSSCCSSCCCEEEEETTSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCeEEEEEEeCCeEEEEeecCCcccccccceeccCCCCHHHH
Confidence 34667889999999999 79999999999999999999999999999983222222222111 22234567778899999
Q ss_pred HhccCCeEEcCCCCchhhhhhcc-cccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCC-CccchhhhH
Q 006706 217 VFNSAQAMRLPYNCPLARIRLLV-GRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELE 294 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ 294 (634)
++.+++++.+++...++++.... .....+.++.+++||... ++..+||+.+.+..+ +.|++++.+
T Consensus 256 v~~~g~~v~i~d~~~d~~~~~~~~~~~g~~~rS~L~vPL~~~-------------~g~viGVL~l~~~~~~~~f~~~d~~ 322 (691)
T 3ibj_A 256 VATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGPWFSKFDED 322 (691)
T ss_dssp HHHHCSCEEESCSTTSTTC------CCSCCCCCEEEEECCCS-------------SSCCCEEEEEEEESSSSSCCTTTTH
T ss_pred HHHhCCEEEecCcccCccccchhhcccCCeeeeEEEEeEECC-------------CCCEEEEEEEEECCCCCCCCHHHHH
Confidence 99999999999888776653211 111234567788887443 133577777766554 479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 295 LIDVVADQVAVALSHAAILEDSMRARNQLM 324 (634)
Q Consensus 295 ll~~~a~~~a~al~~a~l~~~~~~~~~~l~ 324 (634)
+++.+|.++++||++++++++.++..++.+
T Consensus 323 ll~~lA~~~aiAIena~l~~~l~~~~~~~~ 352 (691)
T 3ibj_A 323 LATAFSIYCGISIAHSLLYKKVNEAQYRSH 352 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776654433
No 44
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=99.00 E-value=7.9e-09 Score=106.96 Aligned_cols=169 Identities=10% Similarity=0.088 Sum_probs=126.1
Q ss_pred hchHHHhHHHHHHHHHHhcc-cChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEE-eeccccccccccccCChhH
Q 006706 137 LTQEETGRHVRMLTHEIRST-LDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSY-TLNNQIQIGSSVPINLPIV 214 (634)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~~-ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (634)
++++++++.+.++++.+.+. .|++++++.+++.+.+.+++++|+|++.+++........ +..........++.+.+.+
T Consensus 174 ~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 253 (368)
T 1mc0_A 174 QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIA 253 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEEEEEECSSSEEEEEETTEECCCSTTCCEECTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEEEEEEeCCceEEEEeccccccccccceeecCCCcee
Confidence 34556678899999999999 699999999999999999999999999998433333322 1223333455677788899
Q ss_pred HHHhccCCeEEcCCCCchhhhhhcccc-cCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCC-ccchhh
Q 006706 215 TDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHE 292 (634)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e 292 (634)
++++.+++++.+++....+.+...... ...+..+.+.+||... ++..+|++.+.+..++ .|++++
T Consensus 254 ~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~~~~iGvl~l~~~~~~~~f~~~d 320 (368)
T 1mc0_A 254 GHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGPWFSKFD 320 (368)
T ss_dssp HHHHHHCCCEEESCSTTCTTCCCTTHHHHTCCCCCEEEEEEECT-------------TSCEEEEEEEEEETTSSSCCHHH
T ss_pred eeehhhCCEEEecCcccCcccchhhhhccCCccceEEEEeeECC-------------CCcEEEEEEEEECCCCCCCCHHH
Confidence 999999999999987766554311100 1122467778887432 2446888888776654 799999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 293 LELIDVVADQVAVALSHAAILEDSMR 318 (634)
Q Consensus 293 ~~ll~~~a~~~a~al~~a~l~~~~~~ 318 (634)
.++++.+|.+++++|++++++++.++
T Consensus 321 ~~ll~~la~~~a~ai~na~l~~~~~~ 346 (368)
T 1mc0_A 321 EDLATAFSIYCGISIAHSLLYKKVNE 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 45
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.99 E-value=1.2e-08 Score=105.59 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=124.0
Q ss_pred HhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccC
Q 006706 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 142 ~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (634)
..+.+.++++.+ +++|++++++.+++.+.+.++++.|+||+.++++..+......+........+|.+.+.++.++.++
T Consensus 12 ~~~~l~~l~~~l-~~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~ 90 (368)
T 1mc0_A 12 HDRKILQLCGEL-FDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDK 90 (368)
T ss_dssp HHHHHHHHHHTC-CCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHC
T ss_pred chHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCCeEEEEecCCCccccceeeccccCHHHHHHhcC
Confidence 345688889999 8999999999999999999999999999999888766655443322223345677888999999999
Q ss_pred CeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecC-CCCCccchhhhHHHHHHH
Q 006706 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPT-DGGRKWRDHELELIDVVA 300 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~-~~~~~~~~~e~~ll~~~a 300 (634)
+++.+++...++.... ......+..+.+.+|+... .++..+|++.+.. ..++.|++++.+++..++
T Consensus 91 ~~~~i~d~~~~~~~~~-~~~~~~~~~s~l~vPl~~~------------~~~~~~Gvl~l~~~~~~~~f~~~d~~~l~~la 157 (368)
T 1mc0_A 91 QCIQLKDLTSDDVQQL-QNMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLGGDFFTDEDEHVIQHCF 157 (368)
T ss_dssp CCEEGGGSCHHHHHHH-HHHHCSCCCCEEEEEEECT------------TTCSEEEEEEEEEESSCSSCCSHHHHHHHHHH
T ss_pred CeEEeccccccccccc-ccccCcccceEEEEEeecC------------CCCcEEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 9999998887664221 1122334677788887532 0134677777554 445579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006706 301 DQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 301 ~~~a~al~~a~l~~~~~~~ 319 (634)
.++++++.+++++++.++.
T Consensus 158 ~~~~~al~~~~l~~~~~~~ 176 (368)
T 1mc0_A 158 HYTGTVLTSTLAFQKEQKL 176 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765543
No 46
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.91 E-value=4.5e-09 Score=93.49 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=108.2
Q ss_pred cccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccc--cccc-cccccCChhHHHHhccCCeEEcCCCCc
Q 006706 155 STLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ--IQIG-SSVPINLPIVTDVFNSAQAMRLPYNCP 231 (634)
Q Consensus 155 ~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (634)
+++|++++++.+++.+.+.++++.|+|++.+++ ..+......+.. .... ..++.+.+.+.+++.+++++.+++...
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~-~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLVDARYGAMEVHDRQ-HRVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPLRLDDVSA 81 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT-CCEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCEEESSGGG
T ss_pred CccCHHHHHHHHHHHHHHHhCCCEEEEEEECCC-CCEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcEEecCccc
Confidence 467889999999999999999999999999955 344443333322 1111 355667889999999999999988766
Q ss_pred hhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCC-CccchhhhHHHHHHHHHHHHHHHHH
Q 006706 232 LARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG-RKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~-~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
...+..... ...+....+.+||. .++..+|++.+....+ +.|++++.++++.++.+++++++++
T Consensus 82 ~~~~~~~~~-~~~~~~s~l~vPl~--------------~~~~~~Gvl~l~~~~~~~~f~~~~~~~l~~la~~~a~ai~~a 146 (153)
T 2w3g_A 82 HPASIGFPP-YHPPMRTFLGVPVR--------------VRDESFGTLYLTDKTNGQPFSDDDEVLVQALAAAAGIAVANA 146 (153)
T ss_dssp STTCCCCCT-TCCCCCCEEEEEEE--------------ETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCC-cCCCCCeEEEeeEE--------------ECCEEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 554432222 23455667777764 3445688888887766 7999999999999999999999999
Q ss_pred HHHHHH
Q 006706 311 AILEDS 316 (634)
Q Consensus 311 ~l~~~~ 316 (634)
+++++.
T Consensus 147 ~l~~~~ 152 (153)
T 2w3g_A 147 RLYQQA 152 (153)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 988653
No 47
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.91 E-value=3.2e-09 Score=94.65 Aligned_cols=143 Identities=10% Similarity=0.026 Sum_probs=101.9
Q ss_pred ccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCCeEEcCCCCchhhh
Q 006706 156 TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARI 235 (634)
Q Consensus 156 ~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (634)
+.|++++++.+++.+.+.++++.|+|++.++++ .+......+.+.... ....+.+.++.++.+++++.+++...++.+
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~-~l~~~a~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~ 78 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAG-TMRFVAARGLSEHYQ-RAVDGHSPWITGANEPEPIFVENVDDAEFS 78 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTS-CEEEEEEESCCHHHH-HHTCBCCSCC---CCCCCEEESCGGGSCCC
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCC-cEEEEeeCCCCHHHH-hhccCCCchhhhhhcCCcEEEeChhhCccc
Confidence 468899999999999999999999999999887 555544443321111 113345567889999999999987766533
Q ss_pred hhc-ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 006706 236 RLL-VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (634)
Q Consensus 236 ~~~-~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~ 314 (634)
... ......+..+.+.+||.. ++..+|++.+....++.|++++++++..++.+++.+|++++..+
T Consensus 79 ~~~~~~~~~~g~~s~~~vPl~~--------------~~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~~~r~~~ 144 (151)
T 3hcy_A 79 RELKESIVGEGIAALGFFPLVT--------------EGRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQRMRAEY 144 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEEEES--------------SSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhcCchheEEeceEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 111122446677788743 44568988888888889999999999999999999999887643
No 48
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=98.90 E-value=3.6e-08 Score=86.22 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=99.1
Q ss_pred hhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCC-eEEEEEeeccccccccccccCChhH
Q 006706 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL-NLELSYTLNNQIQIGSSVPINLPIV 214 (634)
Q Consensus 136 ~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (634)
...+..+++.+.++++.| ..++.+++++.+++...+.+++++|.+|++|+++. ....+++.... .....+..+....
T Consensus 7 ~e~ra~rLrlL~e~~~~L-~~l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~~~l~~~aa~G~~~~-l~~lr~~~~~~~~ 84 (160)
T 3cit_A 7 SQSRAARLRLLVDTGQEL-IQLPPEAMRKCVLQRACAFVAMDHGLLLEWGADNGVQTTARHGSKER-LSTLETTADPLAI 84 (160)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHTTCSEEEEEECC--CCCEEEEEESCHHH-HTTSCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhccCeeEEEEEcCCCceeeeeccCchhh-hhhhhcccccccc
Confidence 345666788999999999 77888999999999999999999999999998542 33333441100 0011111111010
Q ss_pred HHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEe-cCCCCCccchhhh
Q 006706 215 TDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLML-PTDGGRKWRDHEL 293 (634)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~-~~~~~~~~~~~e~ 293 (634)
+ +++. .......++.+++||.. ..+..+|++.+ ++.+...|+++|+
T Consensus 85 g-----------------pr~~---~~tg~~t~svl~vPL~~-------------~~g~~~Gvlql~N~~~~~~f~~eD~ 131 (160)
T 3cit_A 85 G-----------------PQWL---ERPGTHLPCVLLLPLRG-------------ADEGSFGTLVLANSVAISAPDGEDI 131 (160)
T ss_dssp S-----------------CEEE---ECTTSSSCEEEEEEEEC-------------SSSSEEEEEEEEESSCCCCCCHHHH
T ss_pred c-----------------cccc---cccCcccceeEEEeeec-------------CCCcEEEEEEEeccCCCCCCCHHHH
Confidence 0 1111 12233467777888732 22346777766 4445558999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 294 ELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 294 ~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
+.++.+|.+++++++|++++++.+..
T Consensus 132 e~l~lLA~~~a~aien~rL~~~L~~r 157 (160)
T 3cit_A 132 ESLQLLATLLAAHLENNRLLEALVAR 157 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 49
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=98.90 E-value=5.2e-08 Score=87.91 Aligned_cols=147 Identities=10% Similarity=0.063 Sum_probs=121.4
Q ss_pred HhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccC
Q 006706 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 142 ~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (634)
....+.++...+.+..|+++.|..++..+.+.++++.|.+++.|+++..+.+....+. .....++.+.+.++.+..++
T Consensus 15 ~~~ll~~i~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G~--~~~~~i~~geGi~G~v~~~g 92 (167)
T 3mmh_A 15 YREVLPQIESVVADETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQGP--LACTRIPFGRGVCGQAWAKG 92 (167)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESS--CCCSEEETTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEeccc--ccceEeccCCChHHHHHhCC
Confidence 3456778888888999999999999999999999999999999887777766554443 23457888999999999999
Q ss_pred CeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHH
Q 006706 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVAD 301 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~ 301 (634)
+++.+++...++.+.. .....++.+++|+.. ++..+||+.+.+..++.|++++.++++.+|.
T Consensus 93 ~~~~v~Dv~~~p~~~~----~~~~~~S~i~vPi~~--------------~g~viGVL~i~s~~~~~F~~~d~~~L~~lA~ 154 (167)
T 3mmh_A 93 GTVVVGDVDAHPDHIA----CSSLSRSEIVVPLFS--------------DGRCIGVLDADSEHLAQFDETDALYLGELAK 154 (167)
T ss_dssp SCEEESCGGGSTTCCC----SSTTCCEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred cEEEECCcccCcchhh----cCccCCeEEEEEecc--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 9999999888776532 234567888899753 3457999999998889999999999999999
Q ss_pred HHHHHHH
Q 006706 302 QVAVALS 308 (634)
Q Consensus 302 ~~a~al~ 308 (634)
+++.++.
T Consensus 155 ~la~~i~ 161 (167)
T 3mmh_A 155 ILEKRFE 161 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988774
No 50
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.88 E-value=8.3e-08 Score=100.45 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=120.9
Q ss_pred HHHhHHHHHHHHHHhcccChhHHHHHHHHH----HHhhcCCceeEEEcccCCCCeEEEEEeeccc-cccccccccCChhH
Q 006706 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVE----LGRTLGLEECALWMPSRTGLNLELSYTLNNQ-IQIGSSVPINLPIV 214 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~----l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 214 (634)
++.+..+.++.+.+.+ .|++.+++.+++. +.+.++++.|+||+.++++..+......+.. ......++.+.+.+
T Consensus 5 ~~~l~~l~~~~~~l~~-~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~ 83 (398)
T 1ykd_A 5 EQKLQIVHQTLSMLDS-HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIA 83 (398)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHH
T ss_pred HHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchh
Confidence 4455667777776754 8887766655554 8999999999999999988776665554432 22344677888999
Q ss_pred HHHhccCCeEEcCCCCch---hhhhhccc-ccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCC-------
Q 006706 215 TDVFNSAQAMRLPYNCPL---ARIRLLVG-RYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD------- 283 (634)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~---~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~------- 283 (634)
+.++.+++++.+++.... ..+..... ....+..+.+++||.. .++..+|++.+.+.
T Consensus 84 g~v~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~-------------~~g~~iGvl~l~~~~~~~~~~ 150 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDPRSIFAQKQEKITGYRTYTMLALPLLS-------------EQGRLVAVVQLLNKLKPYSPP 150 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSGGGHHHHHHHHHHCCCCSCEEEEEEEC-------------SSCCEEEEEEEEEEBCSCCCT
T ss_pred hhhhccCcEEeccchhcccchhhcccccCcccCcCCceEEEEEEEC-------------CCCCEEEEEEEeccCCccccc
Confidence 999999999999987765 44432211 1123456778888743 23346788877665
Q ss_pred --------CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 284 --------GGRKWRDHELELIDVVADQVAVALSHAAILEDSMRA 319 (634)
Q Consensus 284 --------~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~ 319 (634)
.++.|++++.+++..++.++++++++++++++..+.
T Consensus 151 ~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~ 194 (398)
T 1ykd_A 151 DALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQK 194 (398)
T ss_dssp TCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999987765443
No 51
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.84 E-value=4.7e-08 Score=109.87 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=125.1
Q ss_pred HHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhc
Q 006706 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFN 219 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (634)
.++.+.+.++++.|+ .+|++++++.+++.+.+.+++++|+||+.++++..+......+........+|.+ +.+++++.
T Consensus 11 ~e~~~~L~~i~~~ls-~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~l~~~~~~g~~~~~~~~~p~~-Gi~g~v~~ 88 (691)
T 3ibj_A 11 TDRDRKILQLCGELY-DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQLSCKVIGDKVLGEEVSFPLT-GCLGQVVE 88 (691)
T ss_dssp TTHHHHHHHHHHHCC-CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSEEEEEEETTEEEEEEEEEECC-SSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCeEEEEecCCCccccceecCCc-cHHHHHHH
Confidence 345577999999999 9999999999999999999999999999999887766544333222223456777 89999999
Q ss_pred cCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCC-CCCccchhhhHHHHH
Q 006706 220 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTD-GGRKWRDHELELIDV 298 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~-~~~~~~~~e~~ll~~ 298 (634)
+++++.+++....+.+... .....+.++.+++|+... .++..+|++.+... .++.|++++.+++..
T Consensus 89 ~~~pv~i~d~~~~~~~~~~-~~~~~~~~S~L~vPI~~~------------~~g~viGvL~l~~~~~~~~ft~~d~~lL~~ 155 (691)
T 3ibj_A 89 DKKSIQLKDLTSEDVQQLQ-SMLGCELQAMLCVPVISR------------ATDQVVALACAFNKLEGDLFTDEDEHVIQH 155 (691)
T ss_dssp HCCCEEGGGSCHHHHHHHH-HHHTSCCSCEEEEEEECS------------SSCSEEEEEEEESBSSSCCCCTTHHHHHHH
T ss_pred HCCeEEeccchhccccccc-cccCCccceEEEEEeEcC------------CCCcEEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence 9999999998876644321 122334677888887532 12446888876544 456899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006706 299 VADQVAVALSHAAILEDSM 317 (634)
Q Consensus 299 ~a~~~a~al~~a~l~~~~~ 317 (634)
++.++++++.+++++++.+
T Consensus 156 la~~~a~al~~a~l~~~~~ 174 (691)
T 3ibj_A 156 CFHYTSTVLTSTLAFQKEQ 174 (691)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776543
No 52
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=98.76 E-value=1.3e-07 Score=87.39 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=121.0
Q ss_pred HHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhc-CCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHh
Q 006706 140 EETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-GLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVF 218 (634)
Q Consensus 140 ~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (634)
+.....+.++...+.+..|+++.+..++..+.+.+ +++.|.+++.+++ .+.+....+. .....++.+.+.++.+.
T Consensus 25 ~~~~~ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~~--~L~l~~~~G~--~~~~~i~~GeGi~G~aa 100 (195)
T 1vhm_A 25 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK--IACVRIPVGRGVCGTAV 100 (195)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES--CCCSEEETTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEecCc--ccceEecCCCChHHHHH
Confidence 44456788899999999999999999999999999 9999999999874 3333322222 33567788999999999
Q ss_pred ccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHH
Q 006706 219 NSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDV 298 (634)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~ 298 (634)
.+++++.+++...++.+.. .....++.+++|+.. ++..+||+.+.+..++.|++++.++++.
T Consensus 101 ~tg~~i~V~Dv~~~p~~~~----~~~~~~S~l~VPI~~--------------~g~viGVL~i~s~~~~~F~e~d~~~L~~ 162 (195)
T 1vhm_A 101 ARNQVQRIEDVHVFDGHIA----CDAASNSEIVLPLVV--------------KNQIIGVLDIDSTVFGRFTDEDEQGLRQ 162 (195)
T ss_dssp HHTSCEEESCTTTCTTCCC----SCCCCSEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHH
T ss_pred hcCCEEEECCcccCcchhh----cCCCccEEEEEeEeE--------------CCEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 9999999999887665431 234568888888753 3447999999888888999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006706 299 VADQVAVALSHAAI 312 (634)
Q Consensus 299 ~a~~~a~al~~a~l 312 (634)
+|.+++.+++++..
T Consensus 163 lA~~ia~ale~a~~ 176 (195)
T 1vhm_A 163 LVAQLEKVLATTDY 176 (195)
T ss_dssp HHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 53
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=98.67 E-value=1.6e-07 Score=85.71 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccc---cccccccccCC--hhHHHH----------------
Q 006706 159 RHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQ---IQIGSSVPINL--PIVTDV---------------- 217 (634)
Q Consensus 159 ~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~---------------- 217 (634)
++++++++++++.+.+++++|.|++.++++............ ...+..+|..+ ......
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 368999999999999999999999999876554444443321 11222333211 111222
Q ss_pred --------hccCCeEEcCCCCchhhhhh-cccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCcc
Q 006706 218 --------FNSAQAMRLPYNCPLARIRL-LVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKW 288 (634)
Q Consensus 218 --------~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~ 288 (634)
..+++++.+++......+.. .......+.++.+.+|+... +..+|++.+.+..++.|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~--------------~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH--------------QELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCS--------------SCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEEC--------------CEEEEEEEEEeCCCCCC
Confidence 23344444444332211110 01111345666777776433 33577777777789999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 006706 289 RDHELELIDVVADQVAVALSHAAIL 313 (634)
Q Consensus 289 ~~~e~~ll~~~a~~~a~al~~a~l~ 313 (634)
+++|+++++.+|.++++++++++++
T Consensus 147 ~~~e~~~l~~la~~~a~ai~~a~L~ 171 (172)
T 2k2n_A 147 SQEELQVVQLLADQVSIAIAQAELS 171 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999876
No 54
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=98.65 E-value=9.6e-07 Score=93.20 Aligned_cols=161 Identities=6% Similarity=-0.007 Sum_probs=107.3
Q ss_pred HHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccc--cccccccCC--hhHHH
Q 006706 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 216 (634)
+..+.++.++..|++++|++++++++++++++++++|||.||-.++++.....+....+... .+..+|..+ .....
T Consensus 122 ~~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ 201 (505)
T 3nhq_A 122 SFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARR 201 (505)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHH
Confidence 44567899999999999999999999999999999999999999999877666655555432 333334321 22345
Q ss_pred HhccCCeEEcCCCCchhh-h--------------hhccccc----------CCCCceEEeeccccccCccccCCCccccc
Q 006706 217 VFNSAQAMRLPYNCPLAR-I--------------RLLVGRY----------VPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~-~--------------~~~~~~~----------~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....++|...... + +.+.... ..+.++.+.+|+ +..|
T Consensus 202 ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI-------------~~~~ 268 (505)
T 3nhq_A 202 LYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISI-------------VVGG 268 (505)
T ss_dssp HHHHCSEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEE-------------ECSS
T ss_pred HHHcCCEEEEcCCCCCccccccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEE-------------EECC
Confidence 555666666665543310 0 0000000 112233334443 4444
Q ss_pred ccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006706 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
. ..|+++++...+|.|+..++.+++.++.+++++|.++..+++
T Consensus 269 ~-LWGLl~~Hh~~pR~w~~~er~~~e~la~~ls~al~q~~~~~~ 311 (505)
T 3nhq_A 269 K-LWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRI 311 (505)
T ss_dssp S-EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 355555555569999999999999999999999988765544
No 55
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=98.62 E-value=4.1e-07 Score=91.09 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=104.5
Q ss_pred HHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccc--cccccccCC--hhHHH
Q 006706 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 216 (634)
+..+.+..++..|++++|++++++++++++++++++|||.||-.++++.....+....+... .+..+|..+ .....
T Consensus 144 ~~~~ll~~i~~~Ir~sl~l~~il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ 223 (337)
T 2ool_A 144 EFFRSVRVAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRA 223 (337)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHH
Confidence 45667899999999999999999999999999999999999999999887666666555433 233333321 12234
Q ss_pred HhccCCeEEcCCCCchhh-h--------------hhcccc----------cCCCCceEEeeccccccCccccCCCccccc
Q 006706 217 VFNSAQAMRLPYNCPLAR-I--------------RLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~-~--------------~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....+.+...... + ...... ...+.++.+.+|+ +..+
T Consensus 224 ly~~~~vr~I~Di~~~~v~~~~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI-------------~~~~ 290 (337)
T 2ool_A 224 LYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISI-------------VRDN 290 (337)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEE-------------EETT
T ss_pred HHHhCCEEEEEccCCCccccccccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEE-------------EECC
Confidence 555555555555443210 0 000000 0012233334443 4444
Q ss_pred ccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 006706 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILE 314 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~ 314 (634)
.. .|+++++...+|.|+..++.+++.++.+++++|.++...+
T Consensus 291 ~L-WGLl~~Hh~~pR~w~~~e~~~~e~la~~l~iai~q~e~~~ 332 (337)
T 2ool_A 291 RL-WGMISCHNLTPRFVSYEVRQACELIAQVLTWQIGVLEEAE 332 (337)
T ss_dssp EE-EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ee-EEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4455555455999999999999999999999997665443
No 56
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=98.62 E-value=5.4e-07 Score=89.15 Aligned_cols=156 Identities=8% Similarity=0.010 Sum_probs=104.9
Q ss_pred HHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccccc--ccccccCC--hhHHH
Q 006706 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~ 216 (634)
+..+.+..++..|++++|++++++++++++++++++||+.||-.++++.....+....+.... +..+|..+ .....
T Consensus 131 ~~~~ll~~i~~rIr~sldl~~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ 210 (327)
T 4e04_A 131 AFFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARR 210 (327)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHH
Confidence 345679999999999999999999999999999999999999999998877776666654433 33333321 12234
Q ss_pred HhccCCeEEcCCCCchhh-h--------------hhcccc----------cCCCCceEEeeccccccCccccCCCccccc
Q 006706 217 VFNSAQAMRLPYNCPLAR-I--------------RLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~-~--------------~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....++|....+. + ...... ...+.++.+.+|+ +..|
T Consensus 211 ly~~~~vr~I~Di~~~~v~l~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI-------------~~~~ 277 (327)
T 4e04_A 211 LYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISI-------------LRGE 277 (327)
T ss_dssp HHHHSCEEEESCTTCCCEEEESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEE-------------EETT
T ss_pred HHHcCCEEEEeCCCCCccccccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEE-------------EECC
Confidence 555666656665543210 0 000000 0122333344443 3444
Q ss_pred ccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 006706 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
. ..|++++...++|.|+..++.+++.++.+++++|...
T Consensus 278 ~-LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 278 R-LWGLIACHHRKPNYVDLEVRQACELVAQVLAWQIGVM 315 (327)
T ss_dssp E-EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4555555667899999999999999999999999544
No 57
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=98.61 E-value=1.5e-06 Score=91.98 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=107.5
Q ss_pred HhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccc--cccccccCC--hhHHHH
Q 006706 142 TGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDV 217 (634)
Q Consensus 142 ~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 217 (634)
..+.+..++..|++++|++++++++++++++++++|||.||-.++++.....+....+... .+..+|..+ ......
T Consensus 136 ~~~ll~~i~~~Ir~sl~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~l 215 (520)
T 3zq5_A 136 FYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRL 215 (520)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHH
Confidence 3567899999999999999999999999999999999999999999887666666555433 333333321 122445
Q ss_pred hccCCeEEcCCCCchhh-hh---------hccc-----c----------cCCCCceEEeeccccccCccccCCCcccccc
Q 006706 218 FNSAQAMRLPYNCPLAR-IR---------LLVG-----R----------YVPPDIVAVRVPLLHLSNFQINDWPELPAKS 272 (634)
Q Consensus 218 ~~~~~~~~l~~~~~~~~-~~---------~~~~-----~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~ 272 (634)
+..+....++|....+. +. +... . ...+.++.+.+|+ +..|.
T Consensus 216 y~~~~vr~I~Di~~~pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI-------------~~~~~ 282 (520)
T 3zq5_A 216 FIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISL-------------IKDGH 282 (520)
T ss_dssp HHHCCEEEESCTTCCCEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEE-------------EETTE
T ss_pred HHcCCEEEEcCCCCCceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeE-------------EECCE
Confidence 56666666665543211 00 0000 0 0122233344443 33443
Q ss_pred cEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006706 273 YAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 273 ~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
..|+++++...+|.|+..++++++.++.+++++|.++..+++
T Consensus 283 -LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiai~q~e~~~~ 324 (520)
T 3zq5_A 283 -LWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTET 324 (520)
T ss_dssp -EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555689999999999999999999999987765544
No 58
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=98.58 E-value=5.8e-07 Score=89.16 Aligned_cols=156 Identities=6% Similarity=0.002 Sum_probs=104.9
Q ss_pred HHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccccc--ccccccCC--hhHHH
Q 006706 141 ETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQI--GSSVPINL--PIVTD 216 (634)
Q Consensus 141 ~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~ 216 (634)
+..+.+..++..|++++|++++++++++++++++++||+.||-.++++.....+....+.... +..+|..+ .....
T Consensus 149 ~~~~ll~~i~~rIr~sldl~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ 228 (343)
T 3s7o_A 149 TGPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARA 228 (343)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHH
Confidence 345678999999999999999999999999999999999999999998877777666654332 33333321 22344
Q ss_pred HhccCCeEEcCCCCchhh-h--------------hhcccc----------cCCCCceEEeeccccccCccccCCCccccc
Q 006706 217 VFNSAQAMRLPYNCPLAR-I--------------RLLVGR----------YVPPDIVAVRVPLLHLSNFQINDWPELPAK 271 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~-~--------------~~~~~~----------~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~ 271 (634)
.+..+....++|....+. + ..+... ...+.++.+.+|+ +..+
T Consensus 229 ly~~~~vr~I~Di~~~pv~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI-------------~~~~ 295 (343)
T 3s7o_A 229 LYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSV-------------VVGG 295 (343)
T ss_dssp HHHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEE-------------EETT
T ss_pred HHHcCCEEEEeccCCCccccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEE-------------EECC
Confidence 555566656665543311 0 000000 0122233344443 3444
Q ss_pred ccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 006706 272 SYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHA 310 (634)
Q Consensus 272 ~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a 310 (634)
. ..|++++....+|.|+..++++++.++.+++++|...
T Consensus 296 ~-LWGLL~~Hh~~pR~w~~~er~~~e~la~~lsiaI~~~ 333 (343)
T 3s7o_A 296 Q-LWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQVQVK 333 (343)
T ss_dssp E-EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEEEEcCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4555555558899999999999999999999999544
No 59
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=98.49 E-value=1.5e-06 Score=78.01 Aligned_cols=142 Identities=6% Similarity=-0.002 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcccChhHHHHHHHHHHHhhcC-CceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCC
Q 006706 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQ 222 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (634)
..+.++..-+.+..|+...|..++..+.+.++ ++.|.+|+.+++ .+.+....+. +....++.+.+.++.+..+++
T Consensus 18 ~ll~~l~~ll~~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~~--~L~l~a~~G~--~a~~ri~~GeGv~G~va~tg~ 93 (171)
T 3rfb_A 18 MLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGK--ELVLGPFQGG--VSCIRIALGKGVCGEAAHFQE 93 (171)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECSS--EEEEEEEESS--SCCCEEETTSHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHccCCCEEEEEEEECC--EEEEEeccCC--ccceEeeCCcCHHHHHHhhCC
Confidence 35666666777889999999999999999997 899999999864 3333322222 235678889999999999999
Q ss_pred eEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHH
Q 006706 223 AMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQ 302 (634)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~ 302 (634)
++.+++...++.+-. .....++.+++|+.. ++..+||+.+.+..++.|+++|.++++.+|.+
T Consensus 94 ~i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~~--------------~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~ 155 (171)
T 3rfb_A 94 TVIVGDVTTYLNYIS----CDSLAKSEIVVPMMK--------------NGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAI 155 (171)
T ss_dssp CEEESCTTSCSSCCC----SCTTCCEEEEEEEEE--------------TTEEEEEEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred EEEECCcccCccccc----cCcccCceEEEEEEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999988776531 234567888889753 34579999999988889999999999999999
Q ss_pred HHHHH
Q 006706 303 VAVAL 307 (634)
Q Consensus 303 ~a~al 307 (634)
++.++
T Consensus 156 la~~~ 160 (171)
T 3rfb_A 156 LLEKT 160 (171)
T ss_dssp HHHSC
T ss_pred HHHHh
Confidence 87654
No 60
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=98.49 E-value=3e-06 Score=77.63 Aligned_cols=146 Identities=6% Similarity=0.001 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhcccChhHHHHHHHHHHHhhc-----CCceeEEEcccCCC-CeEEEEEeeccccccccccccCChhHHH
Q 006706 143 GRHVRMLTHEIRSTLDRHTILKTTLVELGRTL-----GLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTD 216 (634)
Q Consensus 143 ~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l-----~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (634)
...+.++...+....|+...+..++..+.+.+ +++.|.+++.++++ ..+.+.... .......++.+.+.++.
T Consensus 26 ~~ll~~l~~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~--g~~~~~~i~~g~Gi~G~ 103 (180)
T 1f5m_A 26 EQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQ--GKVACQMIQFGKGVCGT 103 (180)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEE--ESCCCSEEETTSHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecC--CCccceeecCCCcchhh
Confidence 34577778888888999999999999999999 89999999998754 455443221 22234567889999999
Q ss_pred HhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHH
Q 006706 217 VFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELI 296 (634)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll 296 (634)
+..+++++.+++...++.+. ....+.++.+++|+.. .++..+||+.+.+..++.|++++.+++
T Consensus 104 aa~~g~~v~v~Dv~~dp~~~----~~~~~~~S~l~vPi~~-------------~~g~viGVL~l~s~~~~~F~~~d~~~L 166 (180)
T 1f5m_A 104 AASTKETQIVPDVNKYPGHI----ACDGETKSEIVVPIIS-------------NDGKTLGVIDIDCLDYEGFDHVDKEFL 166 (180)
T ss_dssp HHHHTSCEEESCGGGSTTCC----CSSTTCCEEEEEEEEC-------------TTSCEEEEEEEEESSTTCCCHHHHHHH
T ss_pred hhhcCCEEEeCCcccCcccc----ccCcccceEEEEEEEc-------------CCCeEEEEEEeccCCCCCcCHHHHHHH
Confidence 99999999999988777654 2234567888888743 244579999999888889999999999
Q ss_pred HHHHHHHHHHH
Q 006706 297 DVVADQVAVAL 307 (634)
Q Consensus 297 ~~~a~~~a~al 307 (634)
+.+|.+++.++
T Consensus 167 ~~la~~~a~~~ 177 (180)
T 1f5m_A 167 EKLAKLINKSC 177 (180)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 61
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=98.46 E-value=2.4e-06 Score=75.95 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcccChhHHHHHHHHHHHhhcC-CceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCCe
Q 006706 145 HVRMLTHEIRSTLDRHTILKTTLVELGRTLG-LEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQA 223 (634)
Q Consensus 145 ~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (634)
.+.++..-+.+..|+...|..++..+.+.++ ++.|.+|+.+++...+....+. .....++.+.+.++.+..++++
T Consensus 18 ll~~l~~ll~~~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~~~L~l~~~~G~----~a~~ri~~GeGv~G~aa~~~~~ 93 (160)
T 3ksh_A 18 LKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILGPFQGH----PACVHIPIGKGVCGTAVSERRT 93 (160)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHCSSCSEEEEEEEETTEEEEEEEEES----CCCSEEETTSHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHcccCCEEEEEEEECCEEEEEeccCC----cccEEeeCCCCHHHHHHhhCCE
Confidence 4566666677788999999999999999997 9999999998653333333332 2346788899999999999999
Q ss_pred EEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHH
Q 006706 224 MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQV 303 (634)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~ 303 (634)
+.+++....+.+-. .....++.+++|+.. ++..+||+.+.+..++.|+++|.++++.+|.++
T Consensus 94 i~V~Dv~~~p~~i~----~~~~~~Sei~VPI~~--------------~g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 155 (160)
T 3ksh_A 94 QVVADVHQFKGHIA----CDANSKSEIVVPIFK--------------DDKIIGVLDIDAPITDRFDDNDKEHLEAIVKII 155 (160)
T ss_dssp EEESCGGGSTTCCG----GGTTCSEEEEEEEEE--------------TTEEEEEEEEEESSSSCCCHHHHHHHHHHHHHH
T ss_pred EEECCcccCccccc----cCcccCceEEEEEEE--------------CCEEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999988776532 234567888889753 345799999999888899999999999999998
Q ss_pred HHHH
Q 006706 304 AVAL 307 (634)
Q Consensus 304 a~al 307 (634)
+-.+
T Consensus 156 a~~~ 159 (160)
T 3ksh_A 156 EKQL 159 (160)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7554
No 62
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.40 E-value=3.4e-08 Score=113.72 Aligned_cols=171 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred hchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCC--eEE------EEEeecccc--ccccc
Q 006706 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGL--NLE------LSYTLNNQI--QIGSS 206 (634)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~--~~~------~~~~~~~~~--~~~~~ 206 (634)
+++.++++.+.++++.|.+++|++++++.+++.+.+.+++++|+|++.++++. ... ...+..... .....
T Consensus 146 ~~~~~~l~~L~eis~~L~~~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~ 225 (878)
T 3bjc_A 146 HDEGDQCSRLLELVKDISSHLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIR 225 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCccee
Confidence 45566778899999999999999999999999999999999999999988743 111 222222111 23445
Q ss_pred cccCChhHHHHhccCCeEEcCCCCchhhhhhcccc-cCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCC
Q 006706 207 VPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGR-YVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGG 285 (634)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~ 285 (634)
+|.+.+.++.++.+++++.+++...++.+...... ...+..+.+++|| ..+++..+|++.+.+..+
T Consensus 226 ~p~~~gi~g~v~~~g~pv~I~D~~~dp~f~~~~~~~~~~~~~S~L~vPL-------------~~~~g~viGvL~l~~~~~ 292 (878)
T 3bjc_A 226 LEWNKGIVGHVAALGEPLNIKDAYEDPRFNAEVDQITGYKTQSILCMPI-------------KNHREEVVGVAQAINKKS 292 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCccHHHHHHhcCceEEeCCcccCcccccccccccCCccceEEEEee-------------EcCCCCEEEEEEEEecCC
Confidence 67778889999999999999988777665532111 1223445556665 333445688888876654
Q ss_pred C---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 286 R---KWRDHELELIDVVADQVAVALSHAAILEDSMRAR 320 (634)
Q Consensus 286 ~---~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~ 320 (634)
+ .|++++.+++..++.+++++|.+++++++..+.+
T Consensus 293 ~~~~~ft~~D~~lL~~lA~~~a~AL~na~l~e~~~~~~ 330 (878)
T 3bjc_A 293 GNGGTFTEKDEKDFAAYLAFCGIVLHNAQLYETSLLEN 330 (878)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 8999999999999999999999999887665443
No 63
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.40 E-value=5.2e-07 Score=93.99 Aligned_cols=90 Identities=23% Similarity=0.256 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHHHhhcCC----CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhh
Q 006706 456 DEKRLMQTILNIVGNAVKFTK----EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~----~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if 531 (634)
+...+..++.||++||++|+. .|.+.+.+....++ .+.++|+|+|+|+++.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~-------------------~l~i~V~D~G~g~~~~------ 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG-------------------NVRASVIDRGQWKDHR------ 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS-------------------EEEEEEEESCBC----------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC-------------------EEEEEEEECCCCCCCC------
Confidence 346788999999999999983 57777777665332 3999999999999875
Q ss_pred ccccccCCCCCCCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEecC
Q 006706 532 TKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 532 ~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
. ...+.|+||.+++.+++.++ +++. +.|+++++.+|++.
T Consensus 349 ----~------~~~~~G~GL~lv~~l~~~~~----~~~~--~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 349 ----D------GARGRGRGLAMAEALVSEAR----IMHG--AGGTTATLTHRLSR 387 (399)
T ss_dssp ------------------CHHHHHTTSSEEE----EEEE--TTEEEEEEEEECEE
T ss_pred ----C------CCCCCCcHHHHHHHHHHhee----eEEC--CCcEEEEEEEEcCC
Confidence 0 11356999999999887554 5554 57999999999864
No 64
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.39 E-value=1e-06 Score=88.87 Aligned_cols=85 Identities=20% Similarity=0.290 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccC
Q 006706 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||++||+++. ++.+.+.+.. ++. ..|+|.|||+||++++++.+|++|++++
T Consensus 24 ~~~~~v~ELi~NaidA~-a~~I~I~i~~--~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 24 RPASVVKELVENSLDAG-ATRIDIDIER--GGA-------------------KLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEEG--GGT-------------------SEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CHHHHHHHHHHHHHHCC-CCeEEEEEEe--CCc-------------------eEEEEEEcCCCcCHHHHHHhhhcccccC
Confidence 46889999999999987 4566666543 221 4799999999999999999999999876
Q ss_pred CCC-------CCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 539 GSS-------CQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~-------~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
... ...++.|+||+.+..+ +++++.|.
T Consensus 82 ~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~ 115 (333)
T 1b63_A 82 IASLDDLEAIISLGFRGEALASISSV-----SRLTLTSR 115 (333)
T ss_dssp CCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEE
T ss_pred ccccchhhhccccCccccchhhhhcC-----CcEEEEEe
Confidence 432 1223579999877543 25777766
No 65
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.35 E-value=1.3e-06 Score=87.68 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccC
Q 006706 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||+.||+++. ++.+.+.+. .++. ..|+|+|||+||++++++.+|++|+++|
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~~~-------------------~~I~V~DnG~GI~~~~l~~~~~~~~tsK 85 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EGGL-------------------KLIQIQDNGTGIRKEDLDIVCERFTTSK 85 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GGGT-------------------SEEEEEECSCCCCGGGGGTTTSTTCCSS
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eCCE-------------------EEEEEEECCcCcChHHhhhhhccccccc
Confidence 46799999999999985 456666653 2221 5799999999999999999999999987
Q ss_pred CCCCC-------CCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEE
Q 006706 539 GSSCQ-------TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLV 582 (634)
Q Consensus 539 ~~~~~-------~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~l 582 (634)
..... .+-.|.||+.+..+. ++++.+...|....+.+.+
T Consensus 86 ~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~~~~~~~~~~ 131 (348)
T 3na3_A 86 LQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTADGKCAYRASY 131 (348)
T ss_dssp CCCC---------CCTTCHHHHHHHSS-----EEEEEEECTTCSSEEEEEE
T ss_pred cCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECCCCceEEEEE
Confidence 65321 112377776555442 6888776333323344443
No 66
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.34 E-value=7.2e-07 Score=90.85 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccC
Q 006706 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||+.||+++. ++.+.+.+.. ++. ..|+|.|||+||++++++++|++|++++
T Consensus 34 ~~~~vl~eLv~NAiDA~-a~~I~I~i~~--~~~-------------------~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG-ATNIDLKLKD--YGV-------------------DLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp CHHHHHHHHHHHHHHTT-CSEEEEEEEG--GGT-------------------SEEEEEECSCCCCGGGSGGGGC------
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEEEEe--CCc-------------------EEEEEEECCCCcCHHHHHHHhhhccccc
Confidence 46899999999999976 4556666543 221 5799999999999999999999999876
Q ss_pred CCCC------CCCCc-cccHHHHHHHHHHhCCEEEEEec
Q 006706 539 GSSC------QTPRA-GLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~~------~~~g~-GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.... ...|. |+||+.+..+ . ++++.+.
T Consensus 92 ~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~ 125 (365)
T 1h7s_A 92 IQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTC 125 (365)
T ss_dssp ----CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEE
T ss_pred cccccchhcccccCCCCchhhhhhhh----c-cEEEEEc
Confidence 5421 01244 8888876554 2 6777665
No 67
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=98.33 E-value=1.5e-07 Score=88.81 Aligned_cols=63 Identities=16% Similarity=0.024 Sum_probs=18.5
Q ss_pred HHHhCCEEEEEecCCCCceEEEEEEEecCCCCCCCCCCcCcccCCCCCCCCCCCCCceEEecCchhhhhhhh
Q 006706 558 VNLMGGHIWLDSEGLDKGSTVTFLVKLGICNNPGSPIHPVALKGRASHGSADLTGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 558 v~~~gG~i~v~s~~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvvDD~~~~r~v~~ 629 (634)
+..|||+|+++|. +|+||+|++.+|+.....+.... .........+.+|||||||+.+|..++
T Consensus 16 ~~~hgG~i~v~S~-~g~Gs~f~~~lP~~~~~~~~~~~--------~~~~~~~~~~~~ILiVdDd~~~~~~l~ 78 (206)
T 3mm4_A 16 RGSHMASTDSESE-TRVKSVRTGRKPIGNPEDEQETS--------KPSDDEFLRGKRVLVVDDNFISRKVAT 78 (206)
T ss_dssp ------------------------------------------------CTTTTTTCEEEEECSCHHHHHHHH
T ss_pred ccccCCceeeecc-CCCcceeeeccCCCCCccccccc--------CCCcccccCCCEEEEEeCCHHHHHHHH
Confidence 5679999999999 99999999999986543322211 111223357789999999999998754
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.25 E-value=9e-06 Score=74.70 Aligned_cols=144 Identities=11% Similarity=0.028 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccccceeeeHHHHHH
Q 006706 345 NDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIVLR 424 (634)
Q Consensus 345 ~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~l~~~~~~l~~ll~ 424 (634)
-..++...||+.|-|+.|.|++++ ...++..+|+..+....+.... +.++. .-.+..++
T Consensus 22 ~~~LR~qrHdf~NkLqvI~GLlql----~~ydea~~yI~~~~~~~q~~~~-------~~~i~---------~P~la~lL- 80 (192)
T 1ixm_A 22 IHLLGHSRHDWMNKLQLIKGNLSL----QKYDRVFEMIEEMVIDAKHESK-------LSNLK---------TPHLAFDF- 80 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHH-------HHTTT---------CHHHHHHH-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHH-------HHhCC---------CHHHHHHH-
Confidence 345666789999999999999987 3345556666666555544322 22221 11122222
Q ss_pred HHHHHHHHhhhcCCceEEEE-eCCCCCceEEccHHHHHHHHHHHHHHHhhc----CCCCcEEEEEEeec-CCCCCCCCCC
Q 006706 425 EVIKLIKPVASCKKLSMTLI-MAPELPTYAVGDEKRLMQTILNIVGNAVKF----TKEGYVSIIASVAK-PESLSDWRPP 498 (634)
Q Consensus 425 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~~v~~d~~~l~~vl~nLl~NAik~----~~~g~i~v~~~~~~-~~~~~~~~~~ 498 (634)
-. ...+.+++.+.++ +++... ....+..+..++. .+.||+.. ...+.+.+.+.... ++
T Consensus 81 ---l~--K~~~a~e~~i~lev~~~~s~--l~~~~~~lgnLi~-na~~Ai~~~~~~~~~~~I~i~i~~~~~~~-------- 144 (192)
T 1ixm_A 81 ---LT--FNWKTHYMTLEYEVLGEIKD--LSAYDQKLAKLMR-KLFHLFDQAVSRESENHLTVSLQTDHPDR-------- 144 (192)
T ss_dssp ---HH--GGGSCCSSEEEEEEESSCCC--CTTTHHHHHHHHH-HHHHHHHHHBCTTSCCEEEEEEECCCSSS--------
T ss_pred ---HH--HHHHhccCCeEEEEecCccc--cCCCcHHHHHHHH-HHHHHHHhhhccCCCCeEEEEEEEecCCC--------
Confidence 21 2234567777773 333221 1113344444332 22444433 23456666665531 22
Q ss_pred CCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccc
Q 006706 499 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQ 536 (634)
Q Consensus 499 ~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~ 536 (634)
.+.|.|.|+|++|+++.++++|+..++
T Consensus 145 -----------~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 145 -----------QLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp -----------SCEEEEEEESCBSCGGGCC--------
T ss_pred -----------EEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 289999999999999999999985543
No 69
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.24 E-value=1.3e-07 Score=108.83 Aligned_cols=175 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhchHHHhHHHHHHHHHHhc-ccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEE-Eee-ccc--------ccc
Q 006706 135 LILTQEETGRHVRMLTHEIRS-TLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELS-YTL-NNQ--------IQI 203 (634)
Q Consensus 135 ~~~~~~~~~~~l~~l~~~i~~-~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~-~~~-~~~--------~~~ 203 (634)
..+++.++.+.+.++++.+.+ +.+++++++.++..+.+.+++++|+|++.++++..+... ... .+. ...
T Consensus 325 ~~~~~~~~~~~L~~ls~~L~~~s~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~~l~a~a~~~~s~~~~~~~~~~~~~ 404 (878)
T 3bjc_A 325 TSLLENKRNQVLLDLASLIFEEQQSLEVILKKIAATIISFMQVQKCTIFIVDEDCSDSFSSVFHMECEELEKSSDTLTRE 404 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhCcceeEEEEEcCcccchhHHHhhcccccccccccccccc
Confidence 344445556677788888854 579999999999999999999999999999877654332 111 111 011
Q ss_pred ccccccCChhHHHHhccCCeEEcCCCCchhhhhhccccc-C---CCCceEEeeccccccCccccCCCccccc-ccEEEEE
Q 006706 204 GSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRY-V---PPDIVAVRVPLLHLSNFQINDWPELPAK-SYAVMVL 278 (634)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~pl~~~~~~~~~~~~~l~~~-~~~~~vl 278 (634)
...+|.+.+.++.+..+++++.+++...+..+....... . .+.++.+++||.. .+ +..+||+
T Consensus 405 ~~~~p~~~gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~g~~~~~~rS~L~vPL~~-------------~~~g~viGVL 471 (878)
T 3bjc_A 405 HDANKINYMYAQYVKNTMEPLNIPDVSKDKRFPWTTENTGNVNQQCIRSLLCTPIKN-------------GKKNKVIGVC 471 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhhHHHHHhhcCCeeeecCcccccccccccccccCccccccceEEEEEEec-------------CCCCcEEEEE
Confidence 345566778889999999999998877766554322111 1 2345666666643 21 3467788
Q ss_pred EecCCCC------CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 279 MLPTDGG------RKWRDHELELIDVVADQVAVALSHAAILEDSMRARNQ 322 (634)
Q Consensus 279 ~~~~~~~------~~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~~~~~ 322 (634)
.+.+..+ +.|++++.++++.+|.++++||++++++++.++..++
T Consensus 472 ~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIenarl~e~l~~~~~~ 521 (878)
T 3bjc_A 472 QLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQNTQMYEAVERAMAK 521 (878)
T ss_dssp --------------------------------------------------
T ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766544 6899999999999999999999999999887776544
No 70
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.19 E-value=1.1e-06 Score=90.25 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=60.9
Q ss_pred EccHHHHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh----
Q 006706 454 VGDEKRLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 529 (634)
Q Consensus 454 ~~d~~~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~---- 529 (634)
.++...+.+++.|+++||+++ ..+.|.|.+. .+ -.|+|.|||+|||+++.++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~--~~---------------------~~i~V~DnG~GIp~~~~~~~~~~ 86 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLN--ED---------------------GSLTVEDNGRGIPVDLMPEEGKP 86 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEEC--TT---------------------SCEEEEECSSCCCCSEETTTTEE
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEE--cC---------------------CEEEEEEcCCCCCHHHhhhcccc
Confidence 457778888999999999874 3455555552 21 1689999999999999887
Q ss_pred ----hhccccccCCC-----CCCCCCccccHHHHHHHHHHh
Q 006706 530 ----LFTKFAQSRGS-----SCQTPRAGLGLAICRRFVNLM 561 (634)
Q Consensus 530 ----if~~f~~~~~~-----~~~~~g~GlGL~i~k~iv~~~ 561 (634)
+|..++.+..- ....++.|+||++|+.+++.+
T Consensus 87 ~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 87 AVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp HHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred chhhheeeeeecccccCccccccCCCCCcceeeecccccce
Confidence 89887764321 111235899999999998744
No 71
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=98.18 E-value=6.7e-06 Score=67.84 Aligned_cols=149 Identities=12% Similarity=0.220 Sum_probs=106.6
Q ss_pred HHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeecccc---cccccccc---CChhHHHHhccCCeEE
Q 006706 152 EIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQI---QIGSSVPI---NLPIVTDVFNSAQAMR 225 (634)
Q Consensus 152 ~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~ 225 (634)
.+++-.|.+++.....+-+.++.++.-.+||+.|.....+.-..+.+-+. +.-..+|. .-+.+...++.+..+.
T Consensus 7 r~~~l~~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll 86 (162)
T 3eea_A 7 RLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLM 86 (162)
T ss_dssp CGGGGCCHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEE
T ss_pred hHhccccHHHHHHHHHHHHHHHhCCceEEEEEeehhhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCccc
Confidence 44566788999999999999999999999999999888888877776432 12223333 4567788888888887
Q ss_pred cCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCC-ccchhhhHHHHHHHHHHH
Q 006706 226 LPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGR-KWRDHELELIDVVADQVA 304 (634)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~-~~~~~e~~ll~~~a~~~a 304 (634)
+++.....-+.. ...........+.+|| .-|+..+||+++.+...+ .|+++|+.++..+|+++|
T Consensus 87 ~~dp~~s~l~tp-~l~k~~~~~~ILgVPL--------------~~g~qVIGVLFaArR~~R~~Fs~dEiALL~SLAahAA 151 (162)
T 3eea_A 87 LTDPGSSDLLTP-KLRKLLRNLCVLAVPM--------------VVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAA 151 (162)
T ss_dssp ESCGGGCTTSCH-HHHHHTTTEEEEEEEE--------------EETTEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchhccH-HHHHHHhhCeEEEecc--------------eeCCEEEEEEEEecccccCCCCHHHHHHHHHHHHHHH
Confidence 775443322221 1111223445556664 446678999999888888 999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006706 305 VALSHAAILED 315 (634)
Q Consensus 305 ~al~~a~l~~~ 315 (634)
+|+++++++++
T Consensus 152 IAIdnArLldE 162 (162)
T 3eea_A 152 LVVSHMQLFDE 162 (162)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHhhhhcC
Confidence 99999998753
No 72
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2.7e-06 Score=86.27 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccccccC
Q 006706 459 RLMQTILNIVGNAVKFTKEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSR 538 (634)
Q Consensus 459 ~l~~vl~nLl~NAik~~~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f~~~~ 538 (634)
.+.+++.||+.||+++. +..+.+.+. +++. ..|+|.|||+||++++++.+|++|++++
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~~~-------------------~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DYGL-------------------ESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TTTT-------------------SEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eCCE-------------------EEEEEEECCCCcChhHhccceeccccCc
Confidence 46789999999999976 456666553 2221 5899999999999999999999999987
Q ss_pred CCCCC--C--C--C-ccccHHHHHHHHHHhCCEEEEEec
Q 006706 539 GSSCQ--T--P--R-AGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 539 ~~~~~--~--~--g-~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
..... . . | .|.||+.+..+ +++++.+.
T Consensus 83 ~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr 116 (367)
T 3h4l_A 83 IAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITT 116 (367)
T ss_dssp -------CCCCEEEETTHHHHHHHHS-----SEEEEEEE
T ss_pred CCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEE
Confidence 64321 1 1 2 26667655443 25777766
No 73
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.11 E-value=3.9e-05 Score=84.81 Aligned_cols=158 Identities=9% Similarity=0.032 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccc--cccccccCC--hhHHHHhc
Q 006706 144 RHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQ--IGSSVPINL--PIVTDVFN 219 (634)
Q Consensus 144 ~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~ 219 (634)
..+..+...|++++|++++++++++++++++|+|++.||..++++....++....+... .+..+|..+ ......+.
T Consensus 132 ~~~~~~~~~i~~s~~l~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~ 211 (635)
T 4eho_A 132 GTLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYE 211 (635)
T ss_dssp TTSSSHHHHHHHCCSHHHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999887777666555433 233333321 22344555
Q ss_pred cCCeEEcCCCCchhh---------------hhhcccccC----------CCCceEEeeccccccCccccCCCcccccccE
Q 006706 220 SAQAMRLPYNCPLAR---------------IRLLVGRYV----------PPDIVAVRVPLLHLSNFQINDWPELPAKSYA 274 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~---------------~~~~~~~~~----------~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~ 274 (634)
.+....+.+...... ......... .+.++.+.+|+ +..+. .
T Consensus 212 ~~~~r~i~d~~~~~v~~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi-------------~~~~~-L 277 (635)
T 4eho_A 212 RQRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSL-------------VVGGK-L 277 (635)
T ss_dssp HSCEEEESCSSCCCEEEESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEE-------------EETTE-E
T ss_pred cCCeEEEecccCCccccccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEE-------------EEcce-e
Confidence 555555555332110 000000000 12223333333 33343 4
Q ss_pred EEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006706 275 VMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAILED 315 (634)
Q Consensus 275 ~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~~~ 315 (634)
.|+++++...++.|+.+++.+++.++.++++++..+..+++
T Consensus 278 WGLl~~h~~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~~~ 318 (635)
T 4eho_A 278 WGLVACHHYLPRFIHFELRAICELLAEAIATRITALESFAQ 318 (635)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeecCCCCcCCHHHHHHHHHHHHHHHHHHhHHHhHHH
Confidence 55566666679999999999999999999999987766544
No 74
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.06 E-value=2.4e-05 Score=65.22 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 333 ARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDL 402 (634)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 402 (634)
...++++..+.+.+|++.++||+|||++.+.++++.+.+. .....+.+...++++..++++++++
T Consensus 49 m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 49 LRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455577899999999999999999999887642 3445689999999999999999886
No 75
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.74 E-value=7.1e-06 Score=77.61 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.|.+....+. ..|.|.|||.||++++
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 88 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAE 88 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCC--------------------CEEEEEEcCCCCCHHH
Confidence 588899999999864 23444444433322 3689999999999999
Q ss_pred hhhhhcccc
Q 006706 527 IPLLFTKFA 535 (634)
Q Consensus 527 ~~~if~~f~ 535 (634)
+...|..+.
T Consensus 89 l~~~l~~ia 97 (220)
T 2wer_A 89 LINNLGTIA 97 (220)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHHhHh
Confidence 877775544
No 76
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.45 E-value=6.6e-05 Score=72.44 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.|.+....+. -.|.|.|||.||++++
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~--------------------~~I~I~DnG~GMs~ed 130 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQD--------------------RTLTIVDTGIGMTKAD 130 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCe--------------------eEEEEEECCcCCCHHH
Confidence 378899999998764 24455555443332 3689999999999999
Q ss_pred hhhhhccccccCC-----------CCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 527 IPLLFTKFAQSRG-----------SSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 527 ~~~if~~f~~~~~-----------~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
+...|....+++. .....+..|+|++.+..++ -++.|.|.
T Consensus 131 L~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va----~~v~V~Sr 181 (264)
T 1yc1_A 131 LINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----EKVTVITK 181 (264)
T ss_dssp HHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE----EEEEEEEE
T ss_pred HHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCC----CEEEEEEe
Confidence 8766654443221 1111123589988765543 34555554
No 77
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.43 E-value=0.00059 Score=56.50 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 339 KAIHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLS 403 (634)
Q Consensus 339 ~~~~~~~~~~~~isHelr~PL~~I~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~ 403 (634)
...+.+.+++..++||+++|++.+.+.++.+... ..+..+.+.+.+.++..+++++++++
T Consensus 55 ~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 55 QLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334467899999999999999999999877543 24667889999999999999988764
No 78
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.43 E-value=2e-05 Score=75.13 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.|.+....+. ..|.|.|||.||++++
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~--------------------~~i~I~DnG~GMs~ed 109 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 109 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCc--------------------eEEEEEECCCCCCHHH
Confidence 478899999999862 33344444443332 2599999999999999
Q ss_pred hhhhhccccc
Q 006706 527 IPLLFTKFAQ 536 (634)
Q Consensus 527 ~~~if~~f~~ 536 (634)
+...|..+.+
T Consensus 110 l~~~~~~ia~ 119 (235)
T 2ior_A 110 VIDHLGTIAK 119 (235)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHHHHcc
Confidence 9887755543
No 79
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.38 E-value=1.6e-05 Score=76.93 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006706 463 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 463 vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
++.+|++||+++.. .+.+.|.+....+. -.|+|.|||+||+.+++
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~--------------------~~l~I~DnGiGMt~edl 91 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREEL 91 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCc--------------------eEEEEEECCCCCCHHHH
Confidence 78899999998753 23344444443332 36899999999999987
Q ss_pred hhhhcccccc-C---------------CCCCCCCCccccHHHHHHHHH-----------------HhCCEEEEEecC---
Q 006706 528 PLLFTKFAQS-R---------------GSSCQTPRAGLGLAICRRFVN-----------------LMGGHIWLDSEG--- 571 (634)
Q Consensus 528 ~~if~~f~~~-~---------------~~~~~~~g~GlGL~i~k~iv~-----------------~~gG~i~v~s~~--- 571 (634)
...|.....+ . ......+..|+|++.+..+++ ..||.+.+....
T Consensus 92 ~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~i~~~~~~~ 171 (269)
T 1qy5_A 92 VKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGN 171 (269)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEEEEECTTCS
T ss_pred HHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEEEEeccCCC
Confidence 6655433211 0 000001235888887754432 112455555431
Q ss_pred -CCCceEEEEEEEe
Q 006706 572 -LDKGSTVTFLVKL 584 (634)
Q Consensus 572 -~g~Gt~f~i~lP~ 584 (634)
.+.||++++.|+-
T Consensus 172 ~~~~GT~I~L~Lk~ 185 (269)
T 1qy5_A 172 TLGRGTTITLVLKE 185 (269)
T ss_dssp CSSSEEEEEEEECG
T ss_pred cCCCCeEEEEEEcc
Confidence 3678888877753
No 80
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.24 E-value=0.00038 Score=71.30 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCCCCC--------hhhhhccccccCCCC---CC-CCC-ccccHHHHHHHHH
Q 006706 512 RVQVNDSGCGVPPQD--------IPLLFTKFAQSRGSS---CQ-TPR-AGLGLAICRRFVN 559 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~--------~~~if~~f~~~~~~~---~~-~~g-~GlGL~i~k~iv~ 559 (634)
.|+|.|||+|||.+. .+.+|..+..+..-. .. +.| .|.||+.+..+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 589999999999988 677888765542211 11 123 7999999988874
No 81
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.06 E-value=0.00084 Score=68.71 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh--------
Q 006706 459 RLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI-------- 527 (634)
Q Consensus 459 ~l~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~-------- 527 (634)
-+.+++.++++||++.+- ...|.|.+ ..++ .|+|.|||+|||.+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i--~~~g---------------------~I~V~DnG~GIp~~~~~~~~~~~~ 90 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN---------------------SVSVQDDGRGIPTGIHPEEGVSAA 90 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTTSSBHH
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEE--eCCC---------------------EEEEEECCCCcccCcccccCcchH
Confidence 677888888888888743 34444444 3222 5899999999999884
Q ss_pred hhhhccccccCCCC---CC-CCC-ccccHHHHHHHHH
Q 006706 528 PLLFTKFAQSRGSS---CQ-TPR-AGLGLAICRRFVN 559 (634)
Q Consensus 528 ~~if~~f~~~~~~~---~~-~~g-~GlGL~i~k~iv~ 559 (634)
+.+|..+..+..-. .. +.| .|.|++.+..+.+
T Consensus 91 elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 91 EVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp HHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred HHhheeccccCCcCCCcccccCCccccchHHHHHhcC
Confidence 44776444432111 11 123 6999999988775
No 82
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=97.03 E-value=0.0001 Score=69.35 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCCCCChhhhhccccccC-----------CCCCCCCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 512 RVQVNDSGCGVPPQDIPLLFTKFAQSR-----------GSSCQTPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if~~f~~~~-----------~~~~~~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
.|.|.|||.||+++++...|....+++ ......+-.|+||+.+-.+ .-++.|.|.
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~v----ad~v~V~Sr 145 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITK 145 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhcc----CCEEEEEEe
Confidence 689999999999998866554432211 1111112348888766432 235666665
No 83
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=96.93 E-value=0.0002 Score=68.05 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|+.||+++.. .+.+.|.+....+. -.|.|.|||.||++++
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~--------------------~~i~I~DnG~GMt~ed 94 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 94 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC--------------------CEEEEEECCcCCCHHH
Confidence 468889999998753 12234444433322 2689999999999999
Q ss_pred hhhhhccccccCCC-------C------CC---CCCccccHHHHHHHHHHhCCEEEEEec
Q 006706 527 IPLLFTKFAQSRGS-------S------CQ---TPRAGLGLAICRRFVNLMGGHIWLDSE 570 (634)
Q Consensus 527 ~~~if~~f~~~~~~-------~------~~---~~g~GlGL~i~k~iv~~~gG~i~v~s~ 570 (634)
+...|....++... . .. .+..|+|++.+..++ .++.|.|.
T Consensus 95 l~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va----~~v~V~Sr 150 (236)
T 2gqp_A 95 LVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSK 150 (236)
T ss_dssp HHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE----EEEEEEEE
T ss_pred HHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC----CEEEEEEe
Confidence 87777554333110 0 00 012588876554443 56777776
No 84
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=96.83 E-value=0.00035 Score=67.20 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.7
Q ss_pred EEEEEEcCCCCCCCChhh
Q 006706 512 RVQVNDSGCGVPPQDIPL 529 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~ 529 (634)
.|+|.|||.||+++++..
T Consensus 94 tLtI~DNGiGMt~edL~~ 111 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLIN 111 (281)
T ss_dssp EEEEEECSCCCCHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHH
Confidence 689999999999988754
No 85
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.63 E-value=0.0019 Score=68.88 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|++||+++.. .+...|.+....++ -.|+|.|||.||+.++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT--------------------TEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 468899999998861 22233444333332 2689999999999998
Q ss_pred hhhhhccccccCC-------------CCCCCCCccccHHHHHHHH
Q 006706 527 IPLLFTKFAQSRG-------------SSCQTPRAGLGLAICRRFV 558 (634)
Q Consensus 527 ~~~if~~f~~~~~-------------~~~~~~g~GlGL~i~k~iv 558 (634)
+..-+....+++. .....+.-|+|++.+-.++
T Consensus 90 l~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (559)
T 1y4s_A 90 VIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559)
T ss_dssp HHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHE
T ss_pred HHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhcc
Confidence 7665544322211 1111124588887766554
No 86
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=96.58 E-value=0.00021 Score=68.02 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCCCCChhhhh
Q 006706 512 RVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if 531 (634)
.|+|.|||.||+++++..-|
T Consensus 108 ~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHH
T ss_pred EEEEecCCCCcCHHHHHHHH
Confidence 68999999999999876544
No 87
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.57 E-value=0.0034 Score=57.91 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh--------hh
Q 006706 461 MQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI--------PL 529 (634)
Q Consensus 461 ~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~--------~~ 529 (634)
..++.+|+.||++... ...+.|.+ ..++ .|+|.|||.|||.++. +.
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i--~~~g---------------------~i~V~DnG~GIp~~~~~~~~~~~~e~ 75 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVIL--HADQ---------------------SLEVIDDGRGMPVDIHPEEGVPAVEL 75 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTCSSBHHHH
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC---------------------EEEEEECCCCcCcccccccCcchhhe
Confidence 6788888888888733 34455544 3221 5899999999999874 34
Q ss_pred h-hccccccCCCCC---CCCC-ccccHHHHHHHH
Q 006706 530 L-FTKFAQSRGSSC---QTPR-AGLGLAICRRFV 558 (634)
Q Consensus 530 i-f~~f~~~~~~~~---~~~g-~GlGL~i~k~iv 558 (634)
+ +.+..+++-... ...| .|.||+.+..+.
T Consensus 76 i~~~~hatsK~~~~~~~~s~GfrGeglssinalS 109 (201)
T 3fv5_A 76 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 109 (201)
T ss_dssp HHHCC---------------------CHHHHHTE
T ss_pred eeeeeccccCcCCCcccccCcccceecchhhccc
Confidence 3 344433332111 0112 478888877765
No 88
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=96.55 E-value=0.0022 Score=65.05 Aligned_cols=78 Identities=10% Similarity=0.003 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhhhhccc
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKF 534 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~if~~f 534 (634)
+..-+..++.++++||++.+-.| ...|.+....++ .|+|.|||.|||. +-+|...
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g---------------------~I~V~DnGrGIp~---e~v~~lh 82 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG---------------------SIALFCTSRTVTA---ENLVRVA 82 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEEEESSCCH---HHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC---------------------EEEEEECCCCcCH---hHeeeee
Confidence 56789999999999999963222 223333333322 5899999999998 5566333
Q ss_pred cccCCCC----CCCCCccccHHHHHHHH
Q 006706 535 AQSRGSS----CQTPRAGLGLAICRRFV 558 (634)
Q Consensus 535 ~~~~~~~----~~~~g~GlGL~i~k~iv 558 (634)
.+++-.. +...=+| |++.+..+-
T Consensus 83 agsKf~~~~~~~~y~vsG-Gls~vnalS 109 (369)
T 3cwv_A 83 TGAGFLGRPPGDGWGWDS-MLVVSLALS 109 (369)
T ss_dssp TTTTGGGSSCCCSTTTTS-SHHHHHHTE
T ss_pred cCCCcCCCcccccccccC-HHHHHHHhh
Confidence 2222211 1222235 887776664
No 89
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0014 Score=71.18 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh
Q 006706 463 TILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI 527 (634)
Q Consensus 463 vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~ 527 (634)
++.+|++||.++.. .+...|.+....++ -.|+|.|||+||+.+++
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~edl 89 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ--------------------KVLEIRDSGIGMTKAEL 89 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG--------------------TEEEEEECSCCCCHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC--------------------CEEEEEECCCCCCHHHH
Confidence 68899999988752 22234444433332 26899999999999887
Q ss_pred hhhhcccccc-C----------CCCCCCCCccccHHHHHHHHH------------------HhCCEEEEEe----cCCCC
Q 006706 528 PLLFTKFAQS-R----------GSSCQTPRAGLGLAICRRFVN------------------LMGGHIWLDS----EGLDK 574 (634)
Q Consensus 528 ~~if~~f~~~-~----------~~~~~~~g~GlGL~i~k~iv~------------------~~gG~i~v~s----~~~g~ 574 (634)
..-+...-++ + ......+..|+|++.+-..++ .-||.+.++. .+.+.
T Consensus 90 ~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~ 169 (677)
T 2cg9_A 90 INNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGR 169 (677)
T ss_dssp HGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSS
T ss_pred HHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCC
Confidence 6554322111 1 011112345788876532221 1245666765 22467
Q ss_pred ceEEEEEEE
Q 006706 575 GSTVTFLVK 583 (634)
Q Consensus 575 Gt~f~i~lP 583 (634)
||++++.|.
T Consensus 170 GT~I~L~Lk 178 (677)
T 2cg9_A 170 GTILRLFLK 178 (677)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 999888864
No 90
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=96.30 E-value=0.00049 Score=64.74 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.6
Q ss_pred EEEEEEEcCCCCCCCChh
Q 006706 511 LRVQVNDSGCGVPPQDIP 528 (634)
Q Consensus 511 l~i~V~D~G~Gi~~~~~~ 528 (634)
-.|+|.|||.||+++++.
T Consensus 86 ~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 86 RTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp TEEEEEECSCCCCHHHHH
T ss_pred cEEEEEeCCCCCCHHHHH
Confidence 368999999999998873
No 91
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.90 E-value=0.013 Score=54.66 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh-------
Q 006706 458 KRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------- 527 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------- 527 (634)
.-+.+++.+++.||++.+- ...+.|.+ ..++ .|+|.|||.|||.+..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i--~~~g---------------------~i~V~DnGrGIp~~~~~~~~~~~ 90 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTI--HADN---------------------SVSVQDDGRGIPTGIHPEEGVSA 90 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSEETTTTEEH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEE--eCCC---------------------cEEEEECCcCcccccccccCcch
Confidence 5688888999999988743 33444443 3222 4899999999999864
Q ss_pred -hhhhcccccc-CCCCC---CC-CCccccHHHHHHHHH
Q 006706 528 -PLLFTKFAQS-RGSSC---QT-PRAGLGLAICRRFVN 559 (634)
Q Consensus 528 -~~if~~f~~~-~~~~~---~~-~g~GlGL~i~k~iv~ 559 (634)
+-+|.....+ +-... .+ .-.|.|++.+..+.+
T Consensus 91 ~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~ 128 (220)
T 4duh_A 91 AEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 (220)
T ss_dssp HHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEE
T ss_pred hhheeeecccCCCcCCCccccccCccceecchhccccc
Confidence 3345322221 11110 11 125899998887764
No 92
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=95.84 E-value=0.0022 Score=69.33 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|++||+++.. .+...|.+....++ -.|+|.|||.||+.++
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 89 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK--------------------RTLTISDNGVGMTRDE 89 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC--------------------cEEEEEECCCCCCHHH
Confidence 468899999998861 22233444433332 2689999999999998
Q ss_pred hhhhhcc
Q 006706 527 IPLLFTK 533 (634)
Q Consensus 527 ~~~if~~ 533 (634)
+..-+..
T Consensus 90 l~~~l~t 96 (624)
T 2ioq_A 90 VIDHLGT 96 (624)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7665543
No 93
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=95.81 E-value=0.0023 Score=69.40 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhcCC---------------CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC
Q 006706 462 QTILNIVGNAVKFTK---------------EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD 526 (634)
Q Consensus 462 ~vl~nLl~NAik~~~---------------~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~ 526 (634)
.++.+|++||.++.. .+.+.|.+....+. -.|+|.|||+||+.++
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~--------------------~~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK--------------------NLLHVTDTGVGMTREE 107 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT--------------------TEEEEEECSCCCCHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC--------------------CEEEEEECCCCCCHHH
Confidence 478899999998851 23344444443332 2689999999999988
Q ss_pred hhhhhc
Q 006706 527 IPLLFT 532 (634)
Q Consensus 527 ~~~if~ 532 (634)
+..-|.
T Consensus 108 l~~~l~ 113 (666)
T 2o1u_A 108 LVKNLG 113 (666)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 766553
No 94
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=95.55 E-value=0.013 Score=53.71 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCC
Q 006706 456 DEKRLMQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQ 525 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~ 525 (634)
+...+.+++.+++.||++.+- ...+.|.+. .++ .|+|.|||.|||.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~--~~g---------------------~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIE--KDN---------------------WIKVTDNGRGIPVD 77 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEE--GGG---------------------EEEEEECSSCCCCS
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEe--CCC---------------------eEEEEECCCCcccc
Confidence 567789999999999998632 345555443 221 69999999999987
No 95
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.53 E-value=0.022 Score=53.31 Aligned_cols=83 Identities=23% Similarity=0.323 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC-------h
Q 006706 456 DEKRLMQTILNIVGNAVKFTKEG-YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD-------I 527 (634)
Q Consensus 456 d~~~l~~vl~nLl~NAik~~~~g-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~-------~ 527 (634)
+..-|.+++.+++.||++.+..| ...|.+....++ .|+|.|||.|||.+. .
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g---------------------~i~V~DnG~GIp~~~h~~~~~~~ 95 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG---------------------SLTVQDHGRGMPTGMHAMGIPTV 95 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---------------------CEEEEECSSCCCCSBCGGGCBHH
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC---------------------eEEEEEcCCCccccccccCceeh
Confidence 45668889999999999875322 223333333222 589999999999988 5
Q ss_pred hhhhcccccc-CCCC---CCC-CCccccHHHHHHHHH
Q 006706 528 PLLFTKFAQS-RGSS---CQT-PRAGLGLAICRRFVN 559 (634)
Q Consensus 528 ~~if~~f~~~-~~~~---~~~-~g~GlGL~i~k~iv~ 559 (634)
+-+|.....+ +-.. ..+ .-.|.|++.+..+-+
T Consensus 96 e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~ 132 (226)
T 4emv_A 96 EVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSS 132 (226)
T ss_dssp HHHHHCBC--------------CGGGCCHHHHHHTEE
T ss_pred heeEEeecccCccCccceEeccccccccchhhhhccc
Confidence 5566432221 1110 011 125899998877654
No 96
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=95.46 E-value=0.042 Score=56.18 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhhcC-C---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCC------
Q 006706 457 EKRLMQTILNIVGNAVKFT-K---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQD------ 526 (634)
Q Consensus 457 ~~~l~~vl~nLl~NAik~~-~---~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~------ 526 (634)
..-|.+++.++++||++.+ . ...+.|.+. .++ -.|+|.|||.|||.+.
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~--~~~--------------------~~I~V~DnGrGIPv~~h~~~~~ 107 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTID--PEN--------------------NLISIWNNGKGIPVVEHKVEKM 107 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTT--------------------TEEEEEEESSCCCCSEETTTTE
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE--CCC--------------------CEEEEEECCCcccCccccccCc
Confidence 4568999999999999886 1 344544443 221 1699999999999887
Q ss_pred --hhhhhccccc-cCCC----CCCCCCccccHHHHHHHH
Q 006706 527 --IPLLFTKFAQ-SRGS----SCQTPRAGLGLAICRRFV 558 (634)
Q Consensus 527 --~~~if~~f~~-~~~~----~~~~~g~GlGL~i~k~iv 558 (634)
.+-+|..... ++-. .-..+-.|.|++.+..+-
T Consensus 108 ~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 108 YVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp EHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTE
T ss_pred cchhheeeeecccCCCCCCcccccCCccccceeeeEEec
Confidence 3445652222 1111 001123589999887764
No 97
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=95.16 E-value=0.062 Score=55.18 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCChhh----
Q 006706 458 KRLMQTILNIVGNAVKFT----KEGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPL---- 529 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~----~~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~~~---- 529 (634)
.-|.+++.+++.||++.+ ....+.|.+. .++ -.|+|.|||.|||.+..+.
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~--~d~--------------------~sI~V~DnGrGIPv~~h~~~g~~ 120 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIH--AEE--------------------HTIEVKNDGKGIPIEIHNKENIY 120 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE--TTT--------------------TEEEEEEESSCCCCSBCTTTCSB
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEE--CCC--------------------CEEEEEECCCcccCcccccCCcc
Confidence 468899999999999765 2344544443 221 1689999999999876443
Q ss_pred ----hhccccccCCC----CC-CCCCccccHHHHHHHHHHhCCEEEEEecCCCCceEEEEEEEe
Q 006706 530 ----LFTKFAQSRGS----SC-QTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKL 584 (634)
Q Consensus 530 ----if~~f~~~~~~----~~-~~~g~GlGL~i~k~iv~~~gG~i~v~s~~~g~Gt~f~i~lP~ 584 (634)
+|.....+..- .. ..+-.|.|.+.|..+-+. +.++......|-.+...+--
T Consensus 121 ~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y~q~f~~ 180 (418)
T 1pvg_A 121 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKYVQKWEN 180 (418)
T ss_dssp HHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEEEEEEET
T ss_pred cceEEEEEEecccccCCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEEEEEEEc
Confidence 55433322111 10 112359999988877544 33433201245556655543
No 98
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=94.89 E-value=0.14 Score=49.77 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHhhcCCceeEEEcccCCC-CeEEEEEeeccccccccccccCChhHHHHhccCCeEEcCCCCchhhhhhc
Q 006706 160 HTILKTTLVELGRTLGLEECALWMPSRTG-LNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLL 238 (634)
Q Consensus 160 ~~il~~~~~~l~~~l~~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (634)
..+.+..++-+.+..+++.++||..++++ .........++ ...+..+++.+.+++.+++...+........
T Consensus 25 ~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A~iG~----~~~l~~~DpLVr~alet~~l~~v~~~~~~~~---- 96 (298)
T 4eu0_A 25 DALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLATLGE----MPALDADDLLVRTCLERGELVSVRQELLERG---- 96 (298)
T ss_dssp HHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSEEESS----CCCCCSCCHHHHHHHHHTSCEECCC----------
T ss_pred hHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceeeecCC----CCCCCCCCHHHHHHHHhCCceeechhhhhcc----
Confidence 44467788889999999999999987765 33333333333 2356678999999999999888775321110
Q ss_pred ccccCCCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHHHHHHHHHHH
Q 006706 239 VGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVAVALSHAAIL 313 (634)
Q Consensus 239 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a~al~~a~l~ 313 (634)
.........+++||. ..++...|++++.......++++.+.++..++++++.++.++...
T Consensus 97 --~~~~~sryL~viPLl-------------d~~g~i~Gvl~V~~mpF~a~~~~~LqlL~VL~g~~ad~i~~~~~~ 156 (298)
T 4eu0_A 97 --EQRAHSAAAVCVPLV-------------DTDGRILALLAVEQMPFFVFNERTFSLLAILAGHIADLLQSDRRA 156 (298)
T ss_dssp ---------CCEEEEEE-------------CTTSCEEEEEEEEECCGGGCSHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred --ccccccceEEEEEee-------------cCCCcEEEEEEEecCCccccCHhHHHHHHHHHHHHHHHHHhhhhc
Confidence 001133455677763 345557999999999999999999999999999999999777543
No 99
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=94.41 E-value=0.0092 Score=56.15 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCCCCChhhhh
Q 006706 512 RVQVNDSGCGVPPQDIPLLF 531 (634)
Q Consensus 512 ~i~V~D~G~Gi~~~~~~~if 531 (634)
.|+|.|||.||+.+++..-+
T Consensus 131 tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 68999999999999887644
No 100
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=93.60 E-value=0.1 Score=53.17 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh--------hh
Q 006706 461 MQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI--------PL 529 (634)
Q Consensus 461 ~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~--------~~ 529 (634)
.+++.++++||++.+- ...|.|.+ ..++ .|+|.|||.|||.+.. +-
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i--~~dg---------------------sI~V~DnGrGIPv~~h~~~~~~~~e~ 108 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTL--YKDG---------------------SCEVSDDGRGMPVDIHPEEKIPGVEL 108 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEE--CTTS---------------------CEEEEECSSCCCCSBCTTTCSBHHHH
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEE--eCCC---------------------eEEEEEcCCCCCcccccccCCcchhe
Confidence 6677777777777642 23344443 3222 5899999999998874 34
Q ss_pred hhccccccCCCC----CCCC-CccccHHHHHHHHHH
Q 006706 530 LFTKFAQSRGSS----CQTP-RAGLGLAICRRFVNL 560 (634)
Q Consensus 530 if~~f~~~~~~~----~~~~-g~GlGL~i~k~iv~~ 560 (634)
+|.....+..-+ ..+. -.|.|++.+..+-+.
T Consensus 109 i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 109 ILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp HHHCC--------------------CHHHHHHTEEE
T ss_pred EEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 453222211100 0111 258999988877643
No 101
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=92.20 E-value=1.6 Score=41.37 Aligned_cols=158 Identities=14% Similarity=0.119 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhh----hchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeec
Q 006706 123 KNRADELDREMGLI----LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRTGLNLELSYTLN 198 (634)
Q Consensus 123 ~~~~~~l~~~~~~~----~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~ 198 (634)
++..++++.+...+ +..++....+..+...+....+.++++......+.+.++++.+.+++.++.....
T Consensus 78 R~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~------- 150 (252)
T 3e98_A 78 RERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV------- 150 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc-------
Confidence 33444444444333 3333334567788888899999999999999999999999999999987643210
Q ss_pred cccccccccc--cCChhHHHHhccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccccCCCcccccccEEE
Q 006706 199 NQIQIGSSVP--INLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQINDWPELPAKSYAVM 276 (634)
Q Consensus 199 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~ 276 (634)
+...+ .....+...+..+.+.. ............+........+...+||. .+. .+|
T Consensus 151 -----~~~~~~~~~~~~~~~~l~~~~py~-G~l~~~e~~~lFg~~~a~~v~S~AllpL~--------------~~~-~~G 209 (252)
T 3e98_A 151 -----GRSVSSAEAHQAIGGLLSGGKTVC-GVLRPHELAFLFGESDRDEIGSAAVVSLS--------------FQG-LHG 209 (252)
T ss_dssp -----SEEECHHHHHHHHHHHHTTCCCST-TCCCHHHHHHHCCCTTGGGCCEEEEEEEE--------------SSS-EEE
T ss_pred -----hhhccchhHHHHHHHHhCCCCceE-CCCCchHHHHhcCCCccccccceEEEEcC--------------CCC-ceE
Confidence 00000 01112333343333321 11111111111111011223444455652 222 588
Q ss_pred EEEecCCCCCccchh-hhHHHHHHHHHHHHHHH
Q 006706 277 VLMLPTDGGRKWRDH-ELELIDVVADQVAVALS 308 (634)
Q Consensus 277 vl~~~~~~~~~~~~~-e~~ll~~~a~~~a~al~ 308 (634)
++++.+..+..|+++ ...+++.+|..++.++.
T Consensus 210 lLalGS~D~~rF~p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 210 VLAIGSPDPQHYKSSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp EEEEEESSTTGGGSTTTTHHHHHHHHHHHHHGG
T ss_pred EEEEcCCChhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 888888888888766 67888888888777653
No 102
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=89.19 E-value=0.69 Score=53.83 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCC----cEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCCCCCCCCh------
Q 006706 458 KRLMQTILNIVGNAVKFTKEG----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDI------ 527 (634)
Q Consensus 458 ~~l~~vl~nLl~NAik~~~~g----~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~Gi~~~~~------ 527 (634)
.-|.+++.++|+||++.+-.| .+.|.+... ++ .|+|.|||.|||-+..
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~-d~---------------------sisV~DnGRGIPvd~h~~~~~~ 115 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAE-EH---------------------TIEVKNDGKGIPIEIHNKENIY 115 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT-TT---------------------EEEEEECSSCCCCSBCTTTCSB
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECC-CC---------------------EEEEEecCCcccccccCCCCCE
Confidence 368899999999999864322 244444322 22 6899999999996543
Q ss_pred --hhhhccccccCCCC-----CCCCCccccHHHHHHHHH
Q 006706 528 --PLLFTKFAQSRGSS-----CQTPRAGLGLAICRRFVN 559 (634)
Q Consensus 528 --~~if~~f~~~~~~~-----~~~~g~GlGL~i~k~iv~ 559 (634)
+-+|.....+..-+ ...+-.|.|.+.|..+-+
T Consensus 116 ~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 116 IPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp HHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred eeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCC
Confidence 33554443321111 111235999998887754
No 103
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=84.54 E-value=0.4 Score=54.26 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=61.1
Q ss_pred hccCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccc-------cCCCcccccccEEEEEEecCCCCCccch
Q 006706 218 FNSAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI-------NDWPELPAKSYAVMVLMLPTDGGRKWRD 290 (634)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-------~~~~~l~~~~~~~~vl~~~~~~~~~~~~ 290 (634)
+...+.+.+++.++.+++.|+...|..+....|+|.|.+.+.-|. ..|.+|++|.|.+.|.+...++ .|++
T Consensus 694 i~~~~~i~L~~~~n~~~i~fs~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~n~~g--~w~~ 771 (795)
T 4a2l_A 694 ISETKSITLKSWQTAFSIEFVVSNYISGQHNTFAYKLEGYDKEWYYLTDSRTVSYSNLPQGTYQFLVKAANSDG--KWNP 771 (795)
T ss_dssp GGGCSEEEECTTCCEEEEEEEECCTTTTTCCEEEEEEETTCSSCEEESSCCEEEEECCCSEEEEEEEEEECTTS--CBCS
T ss_pred cccccceEECCcCcEEEEEEEEccCCCccccEEEEEEeCCCCCccCCCCcCeEEecccCCCeEEEEEEEECCCC--ccCC
Confidence 334567899999999999999999999999999999988765432 4689999999999999988776 6766
Q ss_pred hh
Q 006706 291 HE 292 (634)
Q Consensus 291 ~e 292 (634)
.+
T Consensus 772 ~~ 773 (795)
T 4a2l_A 772 IP 773 (795)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 104
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=84.28 E-value=0.43 Score=53.70 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=60.5
Q ss_pred cCCeEEcCCCCchhhhhhcccccCCCCceEEeeccccccCccc--------cCCCcccccccEEEEEEecCCCCCccchh
Q 006706 220 SAQAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQI--------NDWPELPAKSYAVMVLMLPTDGGRKWRDH 291 (634)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~--------~~~~~l~~~~~~~~vl~~~~~~~~~~~~~ 291 (634)
..+.+.+++.++.+++.|+...|..+....|++.|.+.+.-|. ..|++|++|.|.+.|.+...++ .|+++
T Consensus 661 ~~~~i~L~~~~~~~~i~f~~l~y~~~~~~~y~Y~L~G~d~~W~~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~ 738 (758)
T 3ott_A 661 YTNSIKLKYDQNNLSFELSDLPYSLDEKNKFVYRLEGMDKEWNFLKSNINRITYSNLSYGNYQLIISKLERDG--QPSNR 738 (758)
T ss_dssp GCSEEEECTTCCCEEEEEECCCTTCSSCCCEEEEEETTCSSCEECCTTCCEEEECSCCSEEEEEEEEEBCTTS--CBCSS
T ss_pred ccccEEecCCCcEEEEEEEcccCCCCccCeEEEEecCCCCCccCCCCCcceEEecCCCCccEEEEEEEeCCCC--CccCc
Confidence 3567899999999999999999999999999999987665332 4689999999999999988776 78776
Q ss_pred hh
Q 006706 292 EL 293 (634)
Q Consensus 292 e~ 293 (634)
+.
T Consensus 739 ~~ 740 (758)
T 3ott_A 739 PH 740 (758)
T ss_dssp CE
T ss_pred cE
Confidence 54
No 105
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=77.16 E-value=0.96 Score=39.13 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=15.8
Q ss_pred CCCceEEecCchhhhhhhh
Q 006706 611 TGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 611 ~~~~vLvvDD~~~~r~v~~ 629 (634)
...+|||||||+..|..++
T Consensus 35 ~~~~Ilivdd~~~~~~~l~ 53 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLT 53 (157)
T ss_dssp EECEEEEECSCHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHH
Confidence 4569999999999988754
No 106
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=75.77 E-value=0.59 Score=52.74 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=58.4
Q ss_pred Ce-EEcCCCCchhhhhhcccccCCCCceEEeeccccccCcc-------ccCCCcccccccEEEEEEecCCCCCccchhh
Q 006706 222 QA-MRLPYNCPLARIRLLVGRYVPPDIVAVRVPLLHLSNFQ-------INDWPELPAKSYAVMVLMLPTDGGRKWRDHE 292 (634)
Q Consensus 222 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e 292 (634)
+. +.+++.++.+++.|+...|..+....|++.|.+.+.-| ...|.+|++|.|.+.|.+...++ .|++.+
T Consensus 691 ~~~i~L~~~~n~~~i~f~~l~y~~~~~~~y~YrL~G~d~~W~~~~~~~~~~ytnL~pG~Y~f~V~a~~~~g--~w~~~~ 767 (781)
T 3v9f_A 691 EGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQ--DWSEDT 767 (781)
T ss_dssp SSEEEECGGGCCEEEEEECSCSGGGGGEEEEEEEETTEEEEEEESSCSEEEECSCCSEEEEEEEEEEETTS--CCCSCC
T ss_pred CccEEecCCCCEEEEEEEecCCCCccccEEEEEecCCCCCccCcCCcceEEEcCCCCceEEEEEEEECCCC--ccCCCc
Confidence 44 88999999999999999999999999999998765432 35789999999999999988776 687654
No 107
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=62.03 E-value=7.5 Score=40.83 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=43.1
Q ss_pred hhchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEccc
Q 006706 136 ILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (634)
Q Consensus 136 ~~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (634)
.+++.+..+.+..+...++++.|..+++.+...++.+++++|+++||..+
T Consensus 312 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 312 AELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 34455666778889999999999999999999999999999999998765
No 108
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=59.69 E-value=8.5 Score=36.29 Aligned_cols=22 Identities=18% Similarity=0.007 Sum_probs=17.8
Q ss_pred CCCCCceEEecCchhhhhhhhh
Q 006706 609 DLTGPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 609 ~~~~~~vLvvDD~~~~r~v~~~ 630 (634)
...+.+|||||||+.+|..++.
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~ 147 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLAD 147 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHH
Confidence 3467899999999999987553
No 109
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=43.71 E-value=8.9 Score=37.00 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=16.2
Q ss_pred CCceEEecCchhhhhhhhh
Q 006706 612 GPKPLFRDNDQIASTKSRY 630 (634)
Q Consensus 612 ~~~vLvvDD~~~~r~v~~~ 630 (634)
+.+|||||||+.+|.+++-
T Consensus 160 ~~rILvVdD~~~~~~~l~~ 178 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEA 178 (286)
T ss_dssp CCEEEEECCSHHHHHHHHH
T ss_pred CCcEEEEcCCHHHHHHHHH
Confidence 4589999999999998653
No 110
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=39.24 E-value=75 Score=33.97 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhcCC---CCcEEEEEEeecCCCCCCCCCCCCCccCCCCceEEEEEEEEcCC---CCCCCChhh-----
Q 006706 461 MQTILNIVGNAVKFTK---EGYVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGC---GVPPQDIPL----- 529 (634)
Q Consensus 461 ~~vl~nLl~NAik~~~---~g~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D~G~---Gi~~~~~~~----- 529 (634)
..++.+++.||+-|.. .+.+.|.+...++ +|+|.+.|. |++.+.+..
T Consensus 298 ~~aiREal~NAl~HrDY~~~~~i~i~i~~~~d----------------------riei~npG~l~~~~t~e~~~~~~s~R 355 (583)
T 3lmm_A 298 RLAVREAMLNAMIHRDWNRSEPIDVRWIELDS----------------------TLIVRSPGGFPAAITSENVLSNRAAR 355 (583)
T ss_dssp HHHHHHHHHHHHHHSCSSSSSCEEEEEETTTT----------------------EEEEEEESCCCTTCCTTSSTTCCCCS
T ss_pred HHHHHHHHHHHHhccccCCCCCEEEEEEecCC----------------------EEEEEcCCCCCCCCCHHHhcCCCCCC
Confidence 4578888888888753 4555555441122 577788884 555544321
Q ss_pred ---hhccccccCCCCCCCCCccccHHHHHHHHHHhCCE-EEEEecCCCCceEEEEEEEecC
Q 006706 530 ---LFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGH-IWLDSEGLDKGSTVTFLVKLGI 586 (634)
Q Consensus 530 ---if~~f~~~~~~~~~~~g~GlGL~i~k~iv~~~gG~-i~v~s~~~g~Gt~f~i~lP~~~ 586 (634)
|.+-|....- ..+.|-|+.-+.+.++..|.. -.+... .|..|+++||...
T Consensus 356 Np~la~~~~~~~~----~e~~GsGi~~i~~~~~~~g~~~P~~~~~---~~~~~~v~l~~~~ 409 (583)
T 3lmm_A 356 YPALADLYRALGL----VDKQGVGVDRMYQAMIALGHRPPTIEEI---AGPFVETTLVGGR 409 (583)
T ss_dssp CHHHHHHHHHTTC----SCSSHHHHHHHHHHHHHTTCCCCEEEEE---TTTEEEEEEECCS
T ss_pred CHHHHHHHHHhCc----cccCCcHHHHHHHHHHHcCCCCCeEEEc---CCCEEEEEEeCCC
Confidence 1222222221 235688888888888887763 344443 2467888888654
No 111
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=37.92 E-value=54 Score=34.41 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=40.2
Q ss_pred hchHHHhHHHHHHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEccc
Q 006706 137 LTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPS 185 (634)
Q Consensus 137 ~~~~~~~~~l~~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~ 185 (634)
+++.+..+....+...++...|..+.+.+....+.+++++|.++++.-+
T Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~ 374 (520)
T 3zq5_A 326 DYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGE 374 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECC
Confidence 3444555566778888888899999999999999999999999998654
No 112
>2lq0_A De novo designed antifreeze peptide 1M; AFP, antifreeze protein; NMR {Synthetic}
Probab=32.58 E-value=31 Score=18.64 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhHHH
Q 006706 57 QFGSFIILCGLTHF 70 (634)
Q Consensus 57 ~~~~f~~~cg~~h~ 70 (634)
+.+.||+-|...|-
T Consensus 8 laasfivrcafehs 21 (26)
T 2lq0_A 8 LAASFIVRCAFEHS 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhh
Confidence 35679999988874
No 113
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=30.03 E-value=2.8e+02 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhhcCCceEEE
Q 006706 420 QIVLREVIKLIKPVASCKKLSMTL 443 (634)
Q Consensus 420 ~~ll~~~~~~~~~~~~~~~i~~~~ 443 (634)
..++.+++...-.......+.+.+
T Consensus 132 ~~il~nll~Na~k~~~~~~i~i~~ 155 (218)
T 3ehh_A 132 SMCLKEAVTNVVKHSQAKTCRVDI 155 (218)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEE
Confidence 345555555554444333444444
No 114
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=27.95 E-value=24 Score=33.22 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.9
Q ss_pred CCCceEEecCchhhhhhhh
Q 006706 611 TGPKPLFRDNDQIASTKSR 629 (634)
Q Consensus 611 ~~~~vLvvDD~~~~r~v~~ 629 (634)
.+.+||||||++.+|..++
T Consensus 123 ~~~~ILivDD~~~~~~~l~ 141 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTM 141 (259)
T ss_dssp TTCEEEEECSCHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHH
Confidence 4579999999999998754
No 115
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=27.84 E-value=2.2e+02 Score=22.96 Aligned_cols=114 Identities=9% Similarity=0.013 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcCCceeEEEcccCCCCeEEEEEeeccccccccccccCChhHHHHhccCCeEEcCCCCchhhhhhcccccC
Q 006706 164 KTTLVELGRTLGLEECALWMPSRTGLNLELSYTLNNQIQIGSSVPINLPIVTDVFNSAQAMRLPYNCPLARIRLLVGRYV 243 (634)
Q Consensus 164 ~~~~~~l~~~l~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 243 (634)
....+-+.+.+++ .++| -| ...+....+.+.....+. ++ ......++.+++.....+... .... ....
T Consensus 5 ~~~AeiI~~~~~~-aV~I--tD--~~~ilA~~G~g~~~~~~~--~i-s~~~~~~i~~~k~~~~~~~~~---~~~~-~~~~ 72 (123)
T 2w1r_A 5 KEYADALYDSLGH-SVLI--CD--RDVYIAVSGSSKKDYLNK--SI-SEMLERTMDQRSSVLESDAKS---VQLV-NGID 72 (123)
T ss_dssp HHHHHHHHHHHCS-EEEE--EC--SSBEEEEESSCHHHHBTC--BB-CHHHHHHHHHCSCEEESSCEE---EESB-TTCE
T ss_pred HHHHHHHHHHHCC-eEEE--Ec--CccEEEEEecChhhcCCC--cc-CHHHHHHHHcCCEEEEcCCcc---cccc-CCCC
Confidence 4455666777777 4444 33 333333333332222222 44 556788999999888854332 1100 0111
Q ss_pred CCCceEEeeccccccCccccCCCcccccccEEEEEEecCCCCCccchhhhHHHHHHHHHHH
Q 006706 244 PPDIVAVRVPLLHLSNFQINDWPELPAKSYAVMVLMLPTDGGRKWRDHELELIDVVADQVA 304 (634)
Q Consensus 244 ~~~~~~~~~pl~~~~~~~~~~~~~l~~~~~~~~vl~~~~~~~~~~~~~e~~ll~~~a~~~a 304 (634)
.+....+.+|+.. .| ..+|++.+. ...+.+++-+.++.+.+|.-++
T Consensus 73 ~~~~s~ii~PI~~-------------~g-~viG~i~l~-~~~~~~~~~~~~la~gla~lls 118 (123)
T 2w1r_A 73 EDMNSYTVGPIVA-------------NG-DPIGAVVIF-SKDQTMGEVEHKAVETAAGFLA 118 (123)
T ss_dssp EEESEEEEEEEEE-------------TT-EEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEEEEEE-------------CC-EEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHH
Confidence 2345667777643 22 346666555 3333588888888888776543
No 116
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.63 E-value=1e+02 Score=20.13 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=8.7
Q ss_pred HHHhhHH-HHHHHHHHhcC
Q 006706 30 LAYFSIP-VELIYFVQKSA 47 (634)
Q Consensus 30 ~a~~~ip-~~~~~~~~~~~ 47 (634)
++.+.|- +.++||++||+
T Consensus 21 v~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 4444444 44455555554
No 117
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=25.49 E-value=3.8e+02 Score=24.29 Aligned_cols=107 Identities=7% Similarity=-0.060 Sum_probs=59.7
Q ss_pred HHHHHHhcccChhHHHHHHHHHHHhhcCCceeEEEcccCC---CCeEEEEEeecccc---ccccccccCChhHHHHhccC
Q 006706 148 MLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRT---GLNLELSYTLNNQI---QIGSSVPINLPIVTDVFNSA 221 (634)
Q Consensus 148 ~l~~~i~~~ld~~~il~~~~~~l~~~l~~~~~~i~l~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 221 (634)
.+-..+....+.+++.... ..+.+.+|.+.+++...... .....+..++...+ .........+|.+.....+.
T Consensus 7 ~~~~~l~~a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~~~~~~i~~~~p~~w~~~Y~~~~y~~~DPv~~~~~~~~ 85 (237)
T 3szt_A 7 GYLEILSRITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEY 85 (237)
T ss_dssp SHHHHHHHCCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTTSCCEEEEECCCHHHHHHHHHTTGGGTCHHHHHHHHSC
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCCCCCeEeeCCCCHHHHHHHHHCCCcccChHhhhhcCCC
Confidence 3445566677777776665 88888999999988654321 12233334444332 12233445688888899888
Q ss_pred CeEEcCCCCchhhhhhcccccCCCCceEEeeccc
Q 006706 222 QAMRLPYNCPLARIRLLVGRYVPPDIVAVRVPLL 255 (634)
Q Consensus 222 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 255 (634)
.+....+......-.+.......+-...+.+|+.
T Consensus 86 ~p~~W~~~~~~~~~~~~~~a~~~gl~~G~~~p~~ 119 (237)
T 3szt_A 86 TPLIWNGEDFQENRFFWEEALHHGIRHGWSIPVR 119 (237)
T ss_dssp SCEEEETTTCSSCHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEeCCCCcccHHHHHHHHHHcCCCCEEEEEee
Confidence 8877765432111112122222334456666654
No 118
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=25.06 E-value=3.2e+02 Score=24.23 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=44.7
Q ss_pred HHHHhhhHHHHHHHhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhhHHHhHHHhccc---ch---hHHHHHHHH--H
Q 006706 19 RYQYISDILIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGSFIILCGLTHFISLWTFTV---HS---KAVAVVMTI--A 90 (634)
Q Consensus 19 ~~~~~s~~~i~~a~~~ip~~~~~~~~~~~~~~~~~~~~~~~~f~~~cg~~h~~~~~~~~~---~~---~~~~~~~~~--~ 90 (634)
++|.+.|.+++.+...+. .+|.++++.-...++++-...=.++....|.+.-+.+|- |. -++|.+..- .
T Consensus 88 p~q~lldy~laf~~~Gla---G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~ 164 (192)
T 3rlb_A 88 LSQAFLEYLVAPVSLGIA---GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGIS 164 (192)
T ss_dssp HHHHHHHHTHHHHHGGGG---GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HhheeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHH
Confidence 568889988877776665 334343332222333322222234555667777555542 21 112222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 006706 91 KMACAFVSCITALMLVHIIPDLLS 114 (634)
Q Consensus 91 k~~~a~vs~~ta~~l~~~~p~~l~ 114 (634)
-...+++.+.....+.+-+|+.+.
T Consensus 165 ~l~~~ii~~iv~~lL~k~~~~~~~ 188 (192)
T 3rlb_A 165 GILTAIAAFVILIIFVKKFPKLFI 188 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 333444445555556666666554
No 119
>2wdq_C Succinate dehydrogenase cytochrome B556 subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_C* 2acz_C* 1nek_C* 2wdr_C* 2wdv_C* 2wp9_C* 2ws3_C* 2wu5_C* 2wu2_C*
Probab=24.20 E-value=2.9e+02 Score=22.49 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=12.3
Q ss_pred CchhhhHHHHHhhhHHHHHH
Q 006706 12 PPDELLVRYQYISDILIALA 31 (634)
Q Consensus 12 ~~~~~~~~~~~~s~~~i~~a 31 (634)
+.+...--+|.+|-.+.++.
T Consensus 21 ~~t~~~silhRiTGv~L~~~ 40 (129)
T 2wdq_C 21 PITAIASILHRVSGVITFVA 40 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 33334445799998776544
No 120
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=23.30 E-value=4.2e+02 Score=23.97 Aligned_cols=112 Identities=10% Similarity=0.112 Sum_probs=58.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------
Q 006706 287 KWRDHELELIDVVADQVAVALSHAAILEDSMR--ARNQLMEQNVALDSARREAEKAIHARNDFRAVMNHEMRTL------ 358 (634)
Q Consensus 287 ~~~~~e~~ll~~~a~~~a~al~~a~l~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelr~P------ 358 (634)
.+.+.+-.+...+..++......+.++.+..+ ......+...++...+.+. .+.+.++...+...+-||
T Consensus 20 ~l~pke~~ff~ll~~~a~~v~~~a~~L~~~l~~~~~~~~~~~~~~I~~lE~~a---D~i~~~i~~~L~~~fitP~dReDI 96 (227)
T 3l39_A 20 KFTPKEPKFFPLLKQLSDVLSASSVLLVESMEHDLPTERADYYKQIKDMEREG---DRLTHLIFDELSTTFITPFDREDI 96 (227)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCSCCSSCHHHH
T ss_pred hhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcCcCCCCHHHH
Confidence 45566677888888887777777777766543 2222222222222222222 112222222222222233
Q ss_pred ----------HHHHHH---HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006706 359 ----------MHAIIA---LSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLD 401 (634)
Q Consensus 359 ----------L~~I~~---~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 401 (634)
+..+.. .+.+..-...++...++++.+.++++.+...+..+.+
T Consensus 97 ~~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~ 152 (227)
T 3l39_A 97 HDLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELET 152 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 2222223455777888888888888888777776644
Done!