Query 006707
Match_columns 634
No_of_seqs 256 out of 1837
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 13:20:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01315 5C_CHO_kinase FGGY-f 100.0 4E-88 8.6E-93 759.8 48.7 522 56-598 1-528 (541)
2 TIGR01314 gntK_FGGY gluconate 100.0 6.9E-86 1.5E-90 737.4 50.4 492 56-615 1-497 (505)
3 PRK15027 xylulokinase; Provisi 100.0 1.9E-85 4.1E-90 730.3 47.2 476 56-611 1-479 (484)
4 PRK04123 ribulokinase; Provisi 100.0 1.9E-84 4E-89 732.8 49.9 497 55-598 3-524 (548)
5 TIGR01234 L-ribulokinase L-rib 100.0 5.1E-83 1.1E-87 718.5 49.1 499 56-609 2-528 (536)
6 PRK00047 glpK glycerol kinase; 100.0 3E-83 6.5E-88 715.1 46.7 467 54-598 4-485 (498)
7 PLN02295 glycerol kinase 100.0 1.4E-82 3E-87 711.3 44.2 467 56-600 1-497 (512)
8 PTZ00294 glycerol kinase-like 100.0 5.9E-82 1.3E-86 705.3 47.3 476 55-611 2-498 (504)
9 PRK10939 autoinducer-2 (AI-2) 100.0 5.8E-82 1.3E-86 707.9 45.7 479 55-598 3-493 (520)
10 COG0554 GlpK Glycerol kinase [ 100.0 1.2E-81 2.7E-86 657.5 40.3 461 54-588 4-475 (499)
11 PRK10331 L-fuculokinase; Provi 100.0 3.7E-81 8E-86 693.5 45.6 458 55-595 2-469 (470)
12 TIGR01311 glycerol_kin glycero 100.0 7.6E-81 1.6E-85 694.9 46.0 466 55-600 1-483 (493)
13 TIGR01312 XylB D-xylulose kina 100.0 1.7E-80 3.7E-85 691.4 46.3 468 58-597 1-473 (481)
14 COG1069 AraB Ribulose kinase [ 100.0 4.5E-80 9.8E-85 654.5 44.1 500 54-587 2-504 (544)
15 PLN02669 xylulokinase 100.0 1.5E-79 3.2E-84 689.1 43.5 494 54-615 7-553 (556)
16 TIGR02628 fuculo_kin_coli L-fu 100.0 4.9E-79 1.1E-83 675.3 43.9 453 56-586 2-465 (465)
17 COG1070 XylB Sugar (pentulose 100.0 1.7E-78 3.6E-83 675.5 46.1 487 52-607 1-494 (502)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 1.1E-68 2.3E-73 591.4 33.2 429 58-576 1-448 (454)
19 PRK10640 rhaB rhamnulokinase; 100.0 7.4E-66 1.6E-70 569.7 34.5 439 70-599 3-463 (471)
20 KOG2531 Sugar (pentulose and h 100.0 7.9E-64 1.7E-68 514.7 31.8 492 51-611 5-544 (545)
21 KOG2517 Ribulose kinase and re 100.0 4.5E-63 9.9E-68 530.2 38.5 461 54-587 5-487 (516)
22 PF00370 FGGY_N: FGGY family o 100.0 3.6E-48 7.9E-53 394.0 19.0 241 56-328 1-245 (245)
23 PF02782 FGGY_C: FGGY family o 100.0 5.8E-32 1.3E-36 265.8 16.4 196 352-563 1-198 (198)
24 TIGR00241 CoA_E_activ CoA-subs 99.3 2.6E-10 5.6E-15 116.3 19.8 74 477-558 173-248 (248)
25 TIGR02259 benz_CoA_red_A benzo 98.5 3.8E-07 8.3E-12 96.1 10.5 73 481-559 354-432 (432)
26 PRK09472 ftsA cell division pr 97.9 0.004 8.6E-08 68.6 24.8 63 483-545 290-359 (420)
27 PRK13317 pantothenate kinase; 97.8 0.0012 2.6E-08 68.3 18.0 124 423-560 140-273 (277)
28 COG1940 NagC Transcriptional r 97.3 0.0017 3.7E-08 68.5 10.8 70 55-132 6-75 (314)
29 TIGR03286 methan_mark_15 putat 97.1 0.0015 3.3E-08 70.1 8.7 73 481-559 328-401 (404)
30 PRK09698 D-allose kinase; Prov 97.1 0.0044 9.6E-08 65.0 12.3 73 55-141 4-76 (302)
31 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.0014 3E-08 67.8 7.7 73 482-561 214-288 (293)
32 TIGR00744 ROK_glcA_fam ROK fam 97.0 0.0035 7.5E-08 66.2 10.5 66 58-132 1-66 (318)
33 PRK13311 N-acetyl-D-glucosamin 96.9 0.005 1.1E-07 63.0 10.4 64 56-131 1-64 (256)
34 COG2971 Predicted N-acetylgluc 96.9 0.0021 4.6E-08 66.0 7.4 69 53-127 3-72 (301)
35 PRK13410 molecular chaperone D 96.9 0.0027 5.8E-08 73.9 9.2 82 482-566 296-381 (668)
36 TIGR02261 benz_CoA_red_D benzo 96.9 0.0029 6.2E-08 64.5 8.2 73 481-559 184-262 (262)
37 CHL00094 dnaK heat shock prote 96.9 0.003 6.6E-08 73.0 9.2 54 514-567 328-382 (621)
38 TIGR03192 benz_CoA_bzdQ benzoy 96.9 0.0025 5.5E-08 65.8 7.5 63 56-131 33-95 (293)
39 PF00480 ROK: ROK family; Int 96.9 0.0041 8.9E-08 59.8 8.6 86 59-169 1-87 (179)
40 PF05378 Hydant_A_N: Hydantoin 96.9 0.00096 2.1E-08 64.3 4.1 77 58-145 2-79 (176)
41 smart00732 YqgFc Likely ribonu 96.8 0.0014 3.1E-08 56.5 4.5 30 57-86 3-32 (99)
42 PRK09557 fructokinase; Reviewe 96.7 0.0094 2E-07 62.5 10.6 74 56-144 1-75 (301)
43 COG1924 Activator of 2-hydroxy 96.7 0.0075 1.6E-07 63.5 9.1 74 482-561 316-390 (396)
44 PF01869 BcrAD_BadFG: BadF/Bad 96.7 0.0036 7.8E-08 64.6 6.8 66 58-128 1-66 (271)
45 PTZ00186 heat shock 70 kDa pre 96.7 0.0061 1.3E-07 70.6 9.3 85 481-565 320-405 (657)
46 PRK13310 N-acetyl-D-glucosamin 96.6 0.011 2.3E-07 62.1 10.4 64 57-132 2-65 (303)
47 PRK00290 dnaK molecular chaper 96.6 0.0066 1.4E-07 70.3 9.2 85 481-565 293-378 (627)
48 COG1924 Activator of 2-hydroxy 96.6 0.0062 1.3E-07 64.1 7.9 68 51-132 131-198 (396)
49 PF14574 DUF4445: Domain of un 96.5 0.0051 1.1E-07 66.8 7.0 77 55-131 1-91 (412)
50 TIGR00555 panK_eukar pantothen 96.5 0.12 2.6E-06 53.4 16.4 119 423-557 145-278 (279)
51 TIGR02529 EutJ ethanolamine ut 96.5 0.0063 1.4E-07 61.7 6.9 64 489-557 174-238 (239)
52 PRK15080 ethanolamine utilizat 96.4 0.011 2.4E-07 61.0 8.5 69 485-558 197-266 (267)
53 PRK05183 hscA chaperone protei 96.4 0.011 2.3E-07 68.4 9.2 85 481-565 295-380 (616)
54 TIGR01991 HscA Fe-S protein as 96.4 0.011 2.3E-07 68.2 9.1 85 481-565 279-364 (599)
55 TIGR02350 prok_dnaK chaperone 96.4 0.01 2.2E-07 68.5 8.7 84 482-565 292-376 (595)
56 TIGR03286 methan_mark_15 putat 96.3 0.013 2.9E-07 62.9 8.3 20 389-408 268-287 (404)
57 PRK01433 hscA chaperone protei 96.2 0.015 3.3E-07 66.7 9.2 82 481-564 277-359 (595)
58 PF00012 HSP70: Hsp70 protein; 96.2 0.0092 2E-07 68.8 7.2 84 482-565 296-380 (602)
59 PRK13928 rod shape-determining 96.0 0.016 3.6E-07 61.7 7.2 81 482-562 240-324 (336)
60 PTZ00400 DnaK-type molecular c 95.9 0.017 3.6E-07 67.3 7.6 81 482-565 335-419 (663)
61 PRK13318 pantothenate kinase; 95.9 0.028 6.1E-07 57.7 8.1 63 57-131 2-64 (258)
62 TIGR02261 benz_CoA_red_D benzo 95.8 0.028 6E-07 57.4 7.7 68 56-132 2-70 (262)
63 PLN03184 chloroplast Hsp70; Pr 95.8 0.029 6.2E-07 65.5 8.7 52 514-565 365-417 (673)
64 PRK13321 pantothenate kinase; 95.8 0.025 5.4E-07 58.0 7.3 63 57-131 2-64 (256)
65 PTZ00009 heat shock 70 kDa pro 95.7 0.027 5.8E-07 65.6 8.2 80 482-564 300-384 (653)
66 PRK13411 molecular chaperone D 95.5 0.034 7.3E-07 64.8 8.1 82 481-565 294-380 (653)
67 PRK11678 putative chaperone; P 95.5 0.071 1.5E-06 59.2 10.2 81 478-561 366-447 (450)
68 PRK05082 N-acetylmannosamine k 95.4 0.088 1.9E-06 54.8 10.1 62 57-132 3-64 (291)
69 smart00842 FtsA Cell division 95.4 0.092 2E-06 51.0 9.4 72 57-132 1-77 (187)
70 PRK13927 rod shape-determining 95.1 0.057 1.2E-06 57.5 7.4 80 482-561 241-324 (334)
71 PRK00292 glk glucokinase; Prov 94.5 0.1 2.3E-06 55.1 7.8 32 55-86 2-34 (316)
72 PRK13930 rod shape-determining 94.4 0.086 1.9E-06 56.1 6.7 79 483-561 246-328 (335)
73 COG2377 Predicted molecular ch 94.1 0.47 1E-05 50.3 11.2 74 483-562 265-344 (371)
74 KOG0103 Molecular chaperones H 94.1 0.14 3.1E-06 57.8 7.8 82 482-563 301-383 (727)
75 TIGR01174 ftsA cell division p 94.0 0.27 5.8E-06 53.2 9.7 74 57-133 2-79 (371)
76 PF00349 Hexokinase_1: Hexokin 94.0 0.15 3.3E-06 50.4 7.1 76 53-130 61-138 (206)
77 PLN02920 pantothenate kinase 1 94.0 2.6 5.6E-05 45.4 16.5 163 351-558 167-349 (398)
78 TIGR00904 mreB cell shape dete 93.8 0.15 3.2E-06 54.3 7.3 79 483-561 245-327 (333)
79 PRK12408 glucokinase; Provisio 93.6 0.14 2.9E-06 54.8 6.3 22 56-77 17-38 (336)
80 TIGR02707 butyr_kinase butyrat 93.5 0.19 4.1E-06 53.9 7.3 57 491-547 269-328 (351)
81 KOG1794 N-Acetylglucosamine ki 93.4 0.35 7.6E-06 49.4 8.5 72 54-130 2-74 (336)
82 PRK09585 anmK anhydro-N-acetyl 93.3 0.27 5.9E-06 52.8 8.0 76 482-563 260-340 (365)
83 PRK13929 rod-share determining 93.1 0.18 3.9E-06 53.8 6.4 76 483-558 244-323 (335)
84 PRK15080 ethanolamine utilizat 92.9 0.46 1E-05 49.0 8.9 64 54-119 23-86 (267)
85 KOG0100 Molecular chaperones G 92.8 0.31 6.8E-06 51.7 7.3 78 489-566 329-416 (663)
86 PRK14101 bifunctional glucokin 92.7 0.25 5.5E-06 57.5 7.3 61 55-131 18-78 (638)
87 PF03702 UPF0075: Uncharacteri 92.4 0.6 1.3E-05 50.2 9.1 84 482-571 258-348 (364)
88 COG0443 DnaK Molecular chapero 91.6 0.63 1.4E-05 53.4 8.7 54 513-566 308-362 (579)
89 PF03630 Fumble: Fumble ; Int 91.0 2 4.4E-05 45.8 11.2 165 351-558 158-339 (341)
90 PF01869 BcrAD_BadFG: BadF/Bad 90.7 1.2 2.5E-05 45.9 8.9 69 491-559 196-271 (271)
91 PF02543 CmcH_NodU: Carbamoylt 90.1 1.3 2.9E-05 47.7 8.9 79 483-565 135-217 (360)
92 TIGR01174 ftsA cell division p 90.0 0.54 1.2E-05 50.8 6.0 64 480-546 279-346 (371)
93 PF11104 PilM_2: Type IV pilus 89.7 0.7 1.5E-05 49.4 6.5 58 489-546 247-306 (340)
94 PF13941 MutL: MutL protein 89.5 1.2 2.6E-05 49.3 8.2 67 57-132 2-73 (457)
95 PLN02914 hexokinase 89.2 1.1 2.4E-05 50.0 7.7 66 51-118 91-159 (490)
96 TIGR01175 pilM type IV pilus a 89.1 1 2.2E-05 48.2 7.2 58 489-546 255-314 (348)
97 TIGR01175 pilM type IV pilus a 89.0 2.3 5E-05 45.3 10.0 73 55-133 3-79 (348)
98 COG2192 Predicted carbamoyl tr 89.0 1.1 2.4E-05 49.9 7.3 79 483-565 258-339 (555)
99 COG0849 ftsA Cell division ATP 89.0 2.4 5.1E-05 46.5 9.9 67 481-547 287-353 (418)
100 TIGR03123 one_C_unchar_1 proba 88.9 0.84 1.8E-05 48.1 6.2 32 58-89 1-32 (318)
101 PRK13317 pantothenate kinase; 88.6 0.49 1.1E-05 49.1 4.2 28 55-82 2-29 (277)
102 TIGR00749 glk glucokinase, pro 88.2 0.85 1.8E-05 48.2 5.8 24 58-81 1-24 (316)
103 TIGR02529 EutJ ethanolamine ut 88.1 1.3 2.8E-05 44.9 6.8 51 59-112 1-52 (239)
104 COG4972 PilM Tfp pilus assembl 88.0 1.2 2.6E-05 46.5 6.4 58 489-546 260-319 (354)
105 TIGR03281 methan_mark_12 putat 87.6 1.3 2.8E-05 45.9 6.3 70 490-564 242-314 (326)
106 PLN02405 hexokinase 87.5 1.6 3.5E-05 48.8 7.7 65 52-118 92-159 (497)
107 PLN02362 hexokinase 87.5 1.8 3.9E-05 48.6 8.0 64 53-118 93-159 (509)
108 PLN02596 hexokinase-like 87.5 1.5 3.4E-05 48.9 7.4 65 52-118 93-160 (490)
109 COG0533 QRI7 Metal-dependent p 87.2 6 0.00013 41.9 11.1 75 489-565 237-319 (342)
110 PTZ00288 glucokinase 1; Provis 86.9 4 8.7E-05 44.6 10.2 73 53-131 24-100 (405)
111 PF06723 MreB_Mbl: MreB/Mbl pr 86.9 0.56 1.2E-05 49.7 3.4 75 484-558 240-318 (326)
112 PRK09604 UGMP family protein; 86.8 2 4.3E-05 45.8 7.7 77 56-132 2-81 (332)
113 PLN02902 pantothenate kinase 86.7 18 0.00038 43.0 15.5 164 351-559 216-399 (876)
114 PF11104 PilM_2: Type IV pilus 86.3 2.2 4.7E-05 45.6 7.7 69 59-133 1-73 (340)
115 KOG0101 Molecular chaperones H 86.0 2.2 4.8E-05 48.6 7.7 55 512-566 332-388 (620)
116 PRK14878 UGMP family protein; 85.8 2.7 5.8E-05 44.6 8.0 73 58-132 1-74 (323)
117 COG4820 EutJ Ethanolamine util 85.4 2.7 5.8E-05 40.9 6.8 64 490-558 207-271 (277)
118 PRK03011 butyrate kinase; Prov 85.4 2.5 5.3E-05 45.6 7.5 67 491-557 271-343 (358)
119 TIGR00143 hypF [NiFe] hydrogen 84.6 1.9 4.2E-05 50.6 6.7 69 491-560 636-711 (711)
120 PF07318 DUF1464: Protein of u 84.2 3 6.5E-05 44.2 7.2 76 490-569 240-324 (343)
121 PTZ00340 O-sialoglycoprotein e 84.1 4.7 0.0001 43.1 8.8 78 56-134 2-81 (345)
122 COG4020 Uncharacterized protei 83.7 3.2 7E-05 41.7 6.7 63 55-131 3-65 (332)
123 PTZ00107 hexokinase; Provision 83.5 5.3 0.00011 44.5 9.2 66 53-118 72-145 (464)
124 PLN02666 5-oxoprolinase 82.7 2.3 4.9E-05 53.0 6.5 85 54-145 8-99 (1275)
125 COG3734 DgoK 2-keto-3-deoxy-ga 82.7 1.8 3.9E-05 44.3 4.7 34 52-85 2-35 (306)
126 PRK13324 pantothenate kinase; 82.3 4.1 8.8E-05 41.8 7.2 64 57-131 2-65 (258)
127 TIGR03723 bact_gcp putative gl 82.3 3.3 7.2E-05 43.8 6.8 76 57-132 1-79 (314)
128 COG3894 Uncharacterized metal- 82.3 3.2 6.9E-05 45.7 6.6 91 492-585 468-565 (614)
129 TIGR00555 panK_eukar pantothen 82.3 5.2 0.00011 41.4 8.0 26 57-82 2-27 (279)
130 PTZ00340 O-sialoglycoprotein e 81.8 5.8 0.00013 42.4 8.4 57 489-546 239-298 (345)
131 PRK00976 hypothetical protein; 80.9 7.2 0.00016 41.2 8.6 69 490-564 244-314 (326)
132 COG0145 HyuA N-methylhydantoin 80.4 2.8 6E-05 48.8 5.8 76 55-143 2-78 (674)
133 PF07318 DUF1464: Protein of u 78.9 2.7 6E-05 44.5 4.7 57 59-133 1-57 (343)
134 PRK10854 exopolyphosphatase; P 78.8 8.1 0.00018 43.8 8.9 71 56-131 12-91 (513)
135 PTZ00297 pantothenate kinase; 78.7 48 0.001 42.4 16.2 72 483-558 1364-1443(1452)
136 PRK13331 pantothenate kinase; 78.5 6.1 0.00013 40.3 7.0 60 492-560 182-248 (251)
137 PRK09604 UGMP family protein; 77.8 8.4 0.00018 41.1 8.1 80 483-566 227-313 (332)
138 KOG0104 Molecular chaperones G 77.7 6 0.00013 45.6 7.1 53 514-566 364-418 (902)
139 PRK09605 bifunctional UGMP fam 77.2 8.3 0.00018 43.9 8.5 76 56-132 2-78 (535)
140 PRK09605 bifunctional UGMP fam 76.7 8.1 0.00018 44.0 8.2 22 177-201 161-182 (535)
141 PRK13326 pantothenate kinase; 76.5 7.7 0.00017 39.9 7.1 59 492-558 194-252 (262)
142 COG3426 Butyrate kinase [Energ 76.2 6.2 0.00013 40.5 6.1 59 491-549 272-334 (358)
143 PRK12440 acetate kinase; Revie 75.2 14 0.00031 40.1 9.0 47 492-539 298-346 (397)
144 TIGR03722 arch_KAE1 universal 75.1 7.6 0.00016 41.2 6.9 74 58-132 1-75 (322)
145 TIGR00329 gcp_kae1 metallohydr 74.8 8.2 0.00018 40.6 7.0 76 58-133 1-79 (305)
146 KOG0102 Molecular chaperones m 73.9 3.5 7.6E-05 45.8 4.0 64 504-567 340-407 (640)
147 COG5026 Hexokinase [Carbohydra 73.3 8.9 0.00019 41.7 6.7 86 477-563 361-460 (466)
148 PF14450 FtsA: Cell division p 71.8 7.4 0.00016 34.8 5.0 56 57-113 1-59 (120)
149 TIGR03706 exo_poly_only exopol 70.5 12 0.00026 39.2 7.0 30 57-86 2-34 (300)
150 TIGR03722 arch_KAE1 universal 70.2 13 0.00029 39.3 7.3 61 483-547 215-278 (322)
151 TIGR00671 baf pantothenate kin 69.4 13 0.00028 37.7 6.8 35 492-526 184-218 (243)
152 TIGR01319 glmL_fam conserved h 68.1 12 0.00027 41.2 6.6 64 60-132 1-69 (463)
153 PRK13320 pantothenate kinase; 67.8 18 0.00039 36.8 7.4 59 492-559 182-240 (244)
154 PRK11031 guanosine pentaphosph 67.3 19 0.0004 40.7 8.1 73 54-131 5-86 (496)
155 PRK03011 butyrate kinase; Prov 66.3 27 0.00058 37.7 8.7 68 56-129 3-73 (358)
156 TIGR03725 bact_YeaZ universal 66.3 15 0.00032 36.1 6.3 63 57-132 1-63 (202)
157 TIGR03723 bact_gcp putative gl 66.1 20 0.00044 37.8 7.7 61 483-547 232-295 (314)
158 PRK14878 UGMP family protein; 65.9 15 0.00032 39.0 6.6 56 491-547 219-277 (323)
159 PRK00976 hypothetical protein; 64.9 17 0.00037 38.4 6.7 63 56-135 2-66 (326)
160 TIGR00329 gcp_kae1 metallohydr 64.9 14 0.00029 39.0 6.1 60 483-546 231-293 (305)
161 KOG1794 N-Acetylglucosamine ki 64.4 24 0.00053 36.5 7.4 76 491-566 238-321 (336)
162 PF00871 Acetate_kinase: Aceto 63.8 18 0.00039 39.4 6.9 55 491-545 296-353 (388)
163 COG0849 ftsA Cell division ATP 61.9 31 0.00067 38.0 8.2 72 56-131 7-83 (418)
164 PRK07157 acetate kinase; Provi 58.9 35 0.00076 37.2 7.9 48 492-539 297-346 (400)
165 COG0068 HypF Hydrogenase matur 58.5 40 0.00087 39.1 8.5 75 482-560 665-746 (750)
166 PRK12397 propionate kinase; Re 58.5 35 0.00077 37.2 7.8 47 492-538 299-346 (404)
167 KOG1369 Hexokinase [Carbohydra 56.5 25 0.00054 39.1 6.4 62 54-119 85-150 (474)
168 COG0533 QRI7 Metal-dependent p 56.1 31 0.00068 36.6 6.7 80 56-136 2-84 (342)
169 COG1214 Inactive homolog of me 55.4 24 0.00052 35.3 5.6 68 56-135 2-71 (220)
170 PRK09557 fructokinase; Reviewe 55.4 48 0.001 34.5 8.2 67 492-559 223-299 (301)
171 PRK00290 dnaK molecular chaper 54.8 9.7 0.00021 44.3 3.1 19 56-74 3-21 (627)
172 PRK14101 bifunctional glucokin 54.6 43 0.00093 39.1 8.4 74 492-565 247-334 (638)
173 PF03727 Hexokinase_2: Hexokin 54.1 19 0.00041 36.5 4.7 81 482-563 143-242 (243)
174 PRK00109 Holliday junction res 53.6 1.6E+02 0.0034 27.1 10.3 22 57-78 6-27 (138)
175 PF14639 YqgF: Holliday-juncti 53.2 38 0.00082 31.7 6.2 29 56-84 6-38 (150)
176 COG0248 GppA Exopolyphosphatas 53.2 19 0.0004 40.5 4.9 72 55-131 3-83 (492)
177 COG2183 Tex Transcriptional ac 52.9 35 0.00076 40.0 7.0 68 51-131 326-394 (780)
178 TIGR03281 methan_mark_12 putat 52.0 9.3 0.0002 39.8 2.1 23 57-79 1-23 (326)
179 PRK13310 N-acetyl-D-glucosamin 51.9 65 0.0014 33.5 8.6 54 299-369 88-143 (303)
180 PTZ00009 heat shock 70 kDa pro 51.6 14 0.0003 43.2 3.7 23 52-74 1-23 (653)
181 COG1548 Predicted transcriptio 50.7 35 0.00077 34.7 5.8 43 515-560 279-328 (330)
182 COG4820 EutJ Ethanolamine util 49.7 41 0.00089 33.0 5.9 25 55-79 29-53 (277)
183 PF01548 DEDD_Tnp_IS110: Trans 49.0 36 0.00079 31.0 5.4 29 57-85 1-29 (144)
184 CHL00094 dnaK heat shock prote 48.6 13 0.00029 43.2 2.9 21 56-77 3-23 (621)
185 KOG1369 Hexokinase [Carbohydra 48.3 26 0.00056 39.0 4.9 88 475-564 367-469 (474)
186 PF07736 CM_1: Chorismate muta 48.2 25 0.00055 31.4 3.9 37 96-132 12-48 (118)
187 COG1521 Pantothenate kinase ty 47.8 42 0.0009 34.3 6.0 61 491-560 189-249 (251)
188 PRK11678 putative chaperone; P 47.5 14 0.0003 41.2 2.7 20 57-77 2-21 (450)
189 PRK05183 hscA chaperone protei 47.5 18 0.00038 42.1 3.7 20 55-74 19-38 (616)
190 PRK05082 N-acetylmannosamine k 47.1 73 0.0016 32.9 8.0 68 492-560 212-287 (291)
191 PRK13917 plasmid segregation p 46.9 69 0.0015 34.3 7.9 46 513-560 290-335 (344)
192 PRK13410 molecular chaperone D 46.8 17 0.00036 42.7 3.4 19 56-74 3-21 (668)
193 KOG2707 Predicted metalloprote 46.8 50 0.0011 35.2 6.4 80 57-136 34-116 (405)
194 PLN03184 chloroplast Hsp70; Pr 46.2 20 0.00043 42.1 3.9 21 54-74 38-58 (673)
195 PRK07058 acetate kinase; Provi 45.9 29 0.00062 37.8 4.7 48 492-539 296-344 (396)
196 PRK13411 molecular chaperone D 45.5 17 0.00038 42.5 3.3 19 56-74 3-21 (653)
197 COG2441 Predicted butyrate kin 45.4 34 0.00073 35.2 4.8 91 489-584 253-356 (374)
198 KOG1386 Nucleoside phosphatase 45.1 61 0.0013 36.0 7.0 66 51-116 5-77 (501)
199 COG1077 MreB Actin-like ATPase 45.0 28 0.0006 36.7 4.2 74 484-557 250-327 (342)
200 COG0443 DnaK Molecular chapero 44.8 19 0.00041 41.5 3.3 22 55-76 5-26 (579)
201 PF05035 DGOK: 2-keto-3-deoxy- 44.4 22 0.00047 37.1 3.4 66 491-559 221-286 (287)
202 PTZ00107 hexokinase; Provision 44.1 1.3E+02 0.0027 33.8 9.5 80 483-563 367-461 (464)
203 PRK12379 propionate/acetate ki 44.1 83 0.0018 34.3 7.8 46 492-538 295-342 (396)
204 COG4972 PilM Tfp pilus assembl 43.1 72 0.0016 33.8 6.8 63 56-123 11-77 (354)
205 PRK00039 ruvC Holliday junctio 42.6 1.5E+02 0.0032 28.2 8.5 22 56-77 3-24 (164)
206 PF04312 DUF460: Protein of un 42.0 77 0.0017 29.2 6.1 33 53-86 30-62 (138)
207 PTZ00186 heat shock 70 kDa pre 41.7 23 0.00049 41.5 3.4 21 55-75 27-47 (657)
208 TIGR01796 CM_mono_aroH monofun 41.5 37 0.00079 30.3 3.9 37 96-132 12-48 (117)
209 cd02185 AroH Chorismate mutase 41.5 37 0.0008 30.3 3.9 37 96-132 12-48 (117)
210 TIGR00744 ROK_glcA_fam ROK fam 41.2 1E+02 0.0022 32.2 8.0 69 492-561 230-310 (318)
211 TIGR02350 prok_dnaK chaperone 41.1 20 0.00043 41.4 2.8 18 57-74 2-19 (595)
212 TIGR02707 butyr_kinase butyrat 40.4 71 0.0015 34.3 6.7 70 57-130 2-72 (351)
213 PF00012 HSP70: Hsp70 protein; 40.1 20 0.00043 41.2 2.7 18 57-74 1-18 (602)
214 PLN02914 hexokinase 37.7 1.7E+02 0.0038 32.9 9.4 48 516-563 432-488 (490)
215 PRK13328 pantothenate kinase; 37.4 1.6E+02 0.0034 30.2 8.4 62 492-561 192-253 (255)
216 PF02075 RuvC: Crossover junct 37.2 1.1E+02 0.0024 28.5 6.7 54 57-117 1-57 (149)
217 KOG1385 Nucleoside phosphatase 37.0 51 0.0011 35.8 4.8 63 54-116 66-133 (453)
218 PLN02405 hexokinase 36.6 1.6E+02 0.0036 33.2 9.0 48 516-563 434-490 (497)
219 COG0837 Glk Glucokinase [Carbo 36.6 1.5E+02 0.0032 31.2 7.8 46 515-560 259-318 (320)
220 PTZ00400 DnaK-type molecular c 36.4 29 0.00062 40.8 3.2 18 56-73 42-59 (663)
221 PRK13329 pantothenate kinase; 36.3 1.8E+02 0.0039 29.6 8.6 62 492-561 185-246 (249)
222 PF06277 EutA: Ethanolamine ut 35.8 41 0.00088 37.4 4.0 66 56-125 4-84 (473)
223 TIGR00904 mreB cell shape dete 35.4 28 0.0006 36.9 2.6 21 58-79 5-25 (333)
224 PF02685 Glucokinase: Glucokin 35.3 50 0.0011 35.0 4.5 48 514-561 254-315 (316)
225 PRK12408 glucokinase; Provisio 35.1 91 0.002 33.2 6.5 48 513-560 270-332 (336)
226 PRK01433 hscA chaperone protei 35.0 44 0.00095 38.7 4.3 19 55-73 19-37 (595)
227 COG5012 Predicted cobalamin bi 34.4 66 0.0014 32.1 4.8 48 492-539 163-211 (227)
228 PRK13327 pantothenate kinase; 33.3 2.2E+02 0.0048 28.8 8.7 63 492-563 178-240 (242)
229 PF03309 Pan_kinase: Type III 32.5 1.2E+02 0.0027 29.7 6.5 20 57-76 1-20 (206)
230 TIGR00250 RNAse_H_YqgF RNAse H 32.2 1.9E+02 0.0042 26.2 7.3 21 58-78 1-21 (130)
231 TIGR01865 cas_Csn1 CRISPR-asso 31.7 33 0.00071 41.2 2.7 22 55-76 1-22 (805)
232 TIGR00016 ackA acetate kinase. 31.1 1.7E+02 0.0036 32.2 7.6 53 492-544 304-359 (404)
233 PRK00292 glk glucokinase; Prov 30.6 1.1E+02 0.0023 32.2 6.1 48 513-560 252-314 (316)
234 PRK13928 rod shape-determining 30.6 31 0.00068 36.6 2.1 22 58-80 6-27 (336)
235 COG4012 Uncharacterized protei 30.2 1.4E+02 0.003 30.7 6.3 41 57-106 229-269 (342)
236 cd00529 RuvC_resolvase Hollida 30.1 1.5E+02 0.0032 27.7 6.3 54 57-117 2-58 (154)
237 PRK00180 acetate kinase A/prop 30.0 1.6E+02 0.0035 32.3 7.4 53 492-544 300-355 (402)
238 COG0282 ackA Acetate kinase [E 30.0 61 0.0013 35.0 4.0 28 56-83 2-30 (396)
239 TIGR01991 HscA Fe-S protein as 30.0 34 0.00074 39.6 2.4 18 57-74 1-18 (599)
240 COG2441 Predicted butyrate kin 29.0 1.3E+02 0.0029 31.0 6.0 41 58-104 1-42 (374)
241 PLN02596 hexokinase-like 28.8 1.2E+02 0.0027 34.1 6.4 89 475-565 382-487 (490)
242 TIGR00016 ackA acetate kinase. 26.6 93 0.002 34.1 4.8 28 57-84 6-35 (404)
243 KOG2201 Pantothenate kinase Pa 26.4 4.1E+02 0.0089 28.3 9.1 56 480-539 274-330 (371)
244 PF07066 DUF3882: Lactococcus 26.3 4.7E+02 0.01 24.4 8.4 57 56-120 3-64 (159)
245 PF03652 UPF0081: Uncharacteri 25.3 86 0.0019 28.7 3.7 23 56-78 2-24 (135)
246 PRK09585 anmK anhydro-N-acetyl 25.2 1.5E+02 0.0034 32.0 6.2 75 56-132 3-99 (365)
247 PRK13326 pantothenate kinase; 25.2 3E+02 0.0065 28.3 8.1 25 56-81 7-31 (262)
248 PRK13929 rod-share determining 25.2 55 0.0012 34.8 2.8 19 57-77 6-25 (335)
249 PTZ00288 glucokinase 1; Provis 24.9 2.6E+02 0.0056 30.8 7.9 51 513-563 322-392 (405)
250 PF06406 StbA: StbA protein; 24.3 3.7E+02 0.0079 28.3 8.8 40 514-555 272-315 (318)
251 PRK13322 pantothenate kinase; 23.9 65 0.0014 32.7 2.9 23 57-79 2-24 (246)
252 PF01968 Hydantoinase_A: Hydan 23.6 1E+02 0.0022 32.2 4.3 65 491-557 214-283 (290)
253 PRK07058 acetate kinase; Provi 23.4 2.4E+02 0.0053 30.8 7.2 32 52-83 1-35 (396)
254 cd06559 Endonuclease_V Endonuc 23.4 4.1E+02 0.009 26.3 8.3 68 55-143 26-104 (208)
255 PF03702 UPF0075: Uncharacteri 23.3 1.3E+02 0.0027 32.6 5.0 76 55-132 1-96 (364)
256 COG1940 NagC Transcriptional r 23.0 2.8E+02 0.006 28.9 7.6 70 491-561 225-307 (314)
257 PRK09698 D-allose kinase; Prov 22.8 3.3E+02 0.0072 28.1 8.1 66 491-561 218-296 (302)
258 KOG2707 Predicted metalloprote 22.8 2.2E+02 0.0048 30.5 6.4 74 492-566 279-359 (405)
259 TIGR03706 exo_poly_only exopol 22.5 2.5E+02 0.0053 29.3 7.0 30 57-87 127-156 (300)
260 COG2971 Predicted N-acetylgluc 22.4 3.3E+02 0.0071 28.6 7.6 68 492-565 227-295 (301)
261 PF08735 DUF1786: Putative pyr 22.3 2.1E+02 0.0046 29.2 6.1 42 56-106 168-209 (254)
262 TIGR03492 conserved hypothetic 21.7 1.8E+02 0.0039 31.7 6.0 85 489-578 68-177 (396)
263 PRK13321 pantothenate kinase; 21.7 4.1E+02 0.0088 27.0 8.3 62 492-561 192-253 (256)
264 PLN02362 hexokinase 21.6 5.4E+02 0.012 29.2 9.8 48 517-564 444-500 (509)
265 PRK13930 rod shape-determining 21.5 61 0.0013 34.2 2.2 16 58-73 11-26 (335)
266 COG3513 Predicted CRISPR-assoc 21.2 75 0.0016 37.4 2.9 22 52-73 1-22 (1088)
267 PRK07157 acetate kinase; Provi 21.0 2.8E+02 0.0061 30.4 7.1 28 57-84 5-33 (400)
268 PF06723 MreB_Mbl: MreB/Mbl pr 20.9 53 0.0012 34.9 1.6 24 57-81 3-26 (326)
269 PF01191 RNA_pol_Rpb5_C: RNA p 20.1 1E+02 0.0022 25.3 2.6 33 265-313 21-53 (74)
No 1
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=4e-88 Score=759.78 Aligned_cols=522 Identities=43% Similarity=0.737 Sum_probs=431.4
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCce
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~-~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~~ 134 (634)
++||||+|||++|++|||.+|+++++++.+++.. +.+|+.||||++||+++++++++++++.+.+..+|.+|||++|++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~s 80 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDATCS 80 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccccc
Confidence 3799999999999999999999999999999864 489999999999999999999999998877778899999999999
Q ss_pred eEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCChhHHHHhCCCCCCCChHHHHHHHHHhchhhHHhhceee
Q 006707 135 LVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM 214 (634)
Q Consensus 135 ~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~ 214 (634)
+|+||++|+|+....+..+.+|+|+|+|.|+.++++++++..++++++||+++++.++++||+|+++|+||+|+++.+|+
T Consensus 81 ~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l 160 (541)
T TIGR01315 81 LVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFF 160 (541)
T ss_pred ceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhc
Confidence 99999999999655555556799999999999999999865457889999999999999999999999999999999999
Q ss_pred cchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccccCCCc
Q 006707 215 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHP 294 (634)
Q Consensus 215 ~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~g~~ 294 (634)
+++|||.|+|||+... +.+. ++.+++|| .+|+++++||+++|+.+||+....++||++.|++++++++
T Consensus 161 ~~~dyl~~~LTG~~~~-d~~~--------as~~~~~d---~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~ 228 (541)
T TIGR01315 161 DLTDFLTWRATGKEIR-SFCS--------VVCKWGFV---PVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSPGEL 228 (541)
T ss_pred chhhhheeeeecchhH-hHhH--------HhHhhhcc---ccccccCCCCHHHHHHcCChhhhhccccccCCcccCCCcc
Confidence 9999999999998752 2222 23334443 3468999999999999999952111345555589999999
Q ss_pred ccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhcccc--ccCcccchhchhhhhhccceEEEEecccceeeeeeCccccc
Q 006707 295 LGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFI 372 (634)
Q Consensus 295 iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g--~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p~~~ 372 (634)
+|+.|++++|+++||++|+||++|++|++|+++|+++ +.++| .++ ...+++.+++|||++++.+.++|..+
T Consensus 229 ~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g---~~~----~~~~~~~~~~GTs~~~~~~~~~~~~~ 301 (541)
T TIGR01315 229 VGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENG---DVS----QAFTRLAAVAGTSTCHMAMTKGPVFV 301 (541)
T ss_pred cccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccc---ccc----CCCCcEEEEecCceEEEEecCCCccC
Confidence 9922999999999999999999999999999999844 23321 000 00238899999999988888877666
Q ss_pred CcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCC-C-ccCCCC
Q 006707 373 PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP-F-VAALTE 450 (634)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p-~-~~~g~~ 450 (634)
++.+.++.++..++.|+.+++++++|.+++||++++...++........+.+.|+.|++.++.+... .| . +|++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~ 379 (541)
T TIGR01315 302 PGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAK--TNAPSISYLVR 379 (541)
T ss_pred CceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhh--cccCccccCCC
Confidence 6544323234568889999999999999999998764211111111112235677776664433211 11 0 113468
Q ss_pred cEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHH
Q 006707 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF 530 (634)
Q Consensus 451 gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~ 530 (634)
|++|+|||.|+|+|+||+++||.|+||+.+|++.++++++||++||++|.+|++++.|++.+.++++|+++||++||++|
T Consensus 380 gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w 459 (541)
T TIGR01315 380 HFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLL 459 (541)
T ss_pred ceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHH
Confidence 99999999999999999999999999999999977777999999999999999999999878889999999999999999
Q ss_pred HHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhH-HhhhHHhc
Q 006707 531 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYL-LTYLYLVY 598 (634)
Q Consensus 531 ~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~-~~y~~~~~ 598 (634)
+||+|||||+||++++..|++++|||++|++++|.|++++++.+.+++..++|+|.+... +.|..++.
T Consensus 460 ~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~~Y~~~y~ 528 (541)
T TIGR01315 460 MQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWPRGDPAKKLHDRKYE 528 (541)
T ss_pred HHHHHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccCCcEEcCCcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999889988999999987776 77776443
No 2
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=6.9e-86 Score=737.45 Aligned_cols=492 Identities=21% Similarity=0.342 Sum_probs=429.6
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-c
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~ 133 (634)
|+||||+|||++|++++|.+|+++++.+.+|+... .+|+.||||++||+++++++++++++.+.+ .+|.+||||+| +
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~ 79 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEILFVSFSTQMH 79 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEecccc
Confidence 58999999999999999999999999999998654 789999999999999999999999876554 78999999998 9
Q ss_pred eeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHHhhc
Q 006707 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (634)
Q Consensus 134 ~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~ 211 (634)
++|+||++|+|+ +|+|+|+|.|+.++++++.+.. ++++++||+++++.++++||+|+++|+||+|+++.
T Consensus 80 ~~v~~D~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~ 150 (505)
T TIGR01314 80 SLIAFDENWQPL---------TRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA 150 (505)
T ss_pred eeEEECCCcCCc---------ccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc
Confidence 999999999999 8999999999999999998765 57899999999999999999999999999999999
Q ss_pred eeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccccC
Q 006707 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (634)
Q Consensus 212 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~ 291 (634)
+|++++|||.|+|||+.. ++.|. ||+|++ +|+++++|++++|+.+||++. +|| +++++
T Consensus 151 ~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~l------~d~~~~~W~~ell~~~gi~~~---~lP----~l~~~ 208 (505)
T TIGR01314 151 KYLEIKGYIFQRLFGTYK-IDYST--------ASATGM------FNLFELDWDKEALELTGIKES---QLP----KLVPT 208 (505)
T ss_pred EEECHHHHHHHHHcCCce-eEhhh--------hhhhcc------eeCCCCCCCHHHHHhcCCCHH---HCC----CCcCc
Confidence 999999999999999874 44443 445553 699999999999999999973 357 78899
Q ss_pred CCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCcccc
Q 006707 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF 371 (634)
Q Consensus 292 g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p~~ 371 (634)
++++|+ |++++|+++||++||||++|++|++|+++|+ |..+ ++++++++|||+++..++++|..
T Consensus 209 g~~iG~-l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~ 272 (505)
T TIGR01314 209 TEIEEN-LPHEYAKKMGIQSSTPFVIGASDGVLSNLGV-NAIK--------------KGEAAVTIGTSGAIRTVIDKPKT 272 (505)
T ss_pred ccccCC-cCHHHHHHhCCCCCCeEEEeccHHHHHHhcC-CCCC--------------CCcEEEEechhheeeeccCcCcc
Confidence 999998 9999999999999999999999999999998 5553 47999999999999988887766
Q ss_pred cCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCccCCCCc
Q 006707 372 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED 451 (634)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g 451 (634)
++... .+++...++.|+.+++++++|.+++||++.+... ..+.+...+.+.|+.|++++++ +|+|++|
T Consensus 273 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~--~~~~~~~~~~~~y~~l~~~a~~---------~~~g~~g 340 (505)
T TIGR01314 273 DEKGR-IFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDS--EIETATRLGIDPYDVLTEIAAR---------VSPGADG 340 (505)
T ss_pred CCCCc-eEEEEecCCcEEEEeeecchHhHHHHHHHHhhhh--hhhhhhhcCCCHHHHHHHHHhh---------CCCCCCc
Confidence 55322 2333233578999999999999999999987532 1111222345678999998876 3478899
Q ss_pred EEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCCHHH
Q 006707 452 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLF 530 (634)
Q Consensus 452 l~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~s~~~ 530 (634)
++|+|||.|+|+|+||+++||+|+|++.+|++.| ++||++||++|.++.+++.+.+ .+.++++|+++||++||++|
T Consensus 341 l~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~---l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w 417 (505)
T TIGR01314 341 LLFHPYLAGERAPLWNANARGSFFGLTYSHKKEH---MIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVW 417 (505)
T ss_pred eEEecccccCCCCCCCCCccEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHH
Confidence 9999999999999999999999999999999988 5679999999999999999876 57788999999999999999
Q ss_pred HHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhHHhhhHHhccccchhhhhhhh
Q 006707 531 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYLLTYLYLVYITRDKEAKICQL 610 (634)
Q Consensus 531 ~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~~~y~~~~~~~~~~~~~~~~~ 610 (634)
+||+|||||+||++++..|++++|||++|++++|.|++++++ +++.+..++|+|.+...+.|..++ ++|+++++.
T Consensus 418 ~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~~~~Y~~~y----~~y~~~~~~ 492 (505)
T TIGR01314 418 RQMMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-STMVGTTETHTPIEKNFEIYREIS----PIFINLSRS 492 (505)
T ss_pred HHHHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HHhcCCCceECcCHHHHHHHHHHH----HHHHHHHHH
Confidence 999999999999999999999999999999999999999987 788889999999998888888754 356666666
Q ss_pred HHhhh
Q 006707 611 ILCFF 615 (634)
Q Consensus 611 ~~~~~ 615 (634)
|...+
T Consensus 493 ~~~~~ 497 (505)
T TIGR01314 493 LLAEY 497 (505)
T ss_pred HHHHH
Confidence 65443
No 3
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=1.9e-85 Score=730.29 Aligned_cols=476 Identities=24% Similarity=0.335 Sum_probs=414.0
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-c
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~ 133 (634)
++||||+|||++|+++||++|+++++++.+|+... .+|++||||++||+++++++++++++. ...+|.+||||+| |
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~q~~ 78 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAGQMH 78 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEecCCC
Confidence 48999999999999999999999999999998654 889999999999999999999999875 3568999999998 9
Q ss_pred eeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCChhHHHHhCCCCCCCChHHHHHHHHHhchhhHHhhcee
Q 006707 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213 (634)
Q Consensus 134 ~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~ 213 (634)
|+|+||++|+|+ +|+++|+|+|+.++++++.+...+++++||+++++.++++||+|+++|+||+|+++++|
T Consensus 79 ~~v~~D~~g~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~ 149 (484)
T PRK15027 79 GATLLDAQQRVL---------RPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV 149 (484)
T ss_pred ceEEECCCcCCc---------cccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhh
Confidence 999999999999 89999999999999999988765678899999999999999999999999999999999
Q ss_pred ecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccccCCC
Q 006707 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293 (634)
Q Consensus 214 ~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~g~ 293 (634)
++++|||.|+|||+.. +|.+.+ ++|+ ++|+++++||+++|+.+||+.. +|| +++++++
T Consensus 150 ~~~~dyl~~~LTG~~~-~d~s~a--------s~t~------l~d~~~~~w~~~ll~~~gi~~~---~lP----~v~~~~~ 207 (484)
T PRK15027 150 LLPKDYLRLRMTGEFA-SDMSDA--------AGTM------WLDVAKRDWSDVMLQACHLSRD---QMP----ALYEGSE 207 (484)
T ss_pred cChHHHHHhhhcCCcc-ccHHHh--------hccc------ccccccCCCcHHHHHHhCCCHH---HCC----CCCCCcc
Confidence 9999999999999874 455533 3444 4699999999999999999873 456 7889999
Q ss_pred cccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCcccccC
Q 006707 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 373 (634)
Q Consensus 294 ~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p~~~~ 373 (634)
++|+ |++++|+++||+ +|||++|++|++|+++|+ |+.+ +|++++++|||.+++.+++++..++
T Consensus 208 ~~G~-l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~~~~~~ 270 (484)
T PRK15027 208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVD--------------ANQAMLSLGTSGVYFAVSEGFLSKP 270 (484)
T ss_pred cccc-ccHHHHHHhCCC-CCeEEecccHHHHHHhcc-Cccc--------------CCcEEEEecCceEEEEecCCcccCc
Confidence 9998 999999999997 699999999999999999 5554 4789999999999888888776554
Q ss_pred cccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCccCCCCcEE
Q 006707 374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453 (634)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 453 (634)
.......++..|+.|+.++++.++|.+++|+++.+.. +.|+++.+++++ +|+|++|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~a~~---------~~~g~~gl~ 328 (484)
T PRK15027 271 ESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------------SNVPALIAAAQQ---------ADESAEPVW 328 (484)
T ss_pred hhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------------ccHHHHHHHHhh---------CCCCCCceE
Confidence 2211123446688899999999999999999987631 224555555544 347999999
Q ss_pred EecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHH
Q 006707 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ 533 (634)
Q Consensus 454 flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi 533 (634)
|+|||.|+|+|+||+++||+|+|++.+|++.| ++||++||++|.+|.+++.|++.|.++++|+++||++||++|+||
T Consensus 329 ~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi 405 (484)
T PRK15027 329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNE---LARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQM 405 (484)
T ss_pred EecccccCCCcCCCCCcceEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHH
Confidence 99999999999999999999999999999988 567999999999999999998878889999999999999999999
Q ss_pred HHHhhCCceeccC-CCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhHHhhhHHhccccchhhhhhhhH
Q 006707 534 HADIIGCPIILPR-ENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYLLTYLYLVYITRDKEAKICQLI 611 (634)
Q Consensus 534 ~Advlg~pV~~~~-~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~~~y~~~~~~~~~~~~~~~~~~ 611 (634)
+||++|+||++.. ..+++++|||++|++++|.|+|++++. ++.+..++|+|.+...+.|..++ ++|+++++.+
T Consensus 406 ~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P~~~~~~~Y~~~~----~~y~~~y~~~ 479 (484)
T PRK15027 406 LADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELL-PQLPLEQSHLPDAQRYAAYQPRR----ETFRRLYQQL 479 (484)
T ss_pred HHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHH-hhcCCCceECCCHHHHHHHHHHH----HHHHHHHHHH
Confidence 9999999997655 445889999999999999999999875 55578999999988888888754 4566666655
No 4
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=1.9e-84 Score=732.79 Aligned_cols=497 Identities=29% Similarity=0.439 Sum_probs=417.1
Q ss_pred cEEEEEecCCcccEEEEEcC-CCcEEEEEEeeeccc-------cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEE
Q 006707 55 SVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIW-------KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKG 126 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~-~g~vl~~~~~~~~~~-------~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~a 126 (634)
+|+||||+||||+|++|||. +|+++++++.+|+.+ +.+||+||||++||+++++++++++++.+.+..+|.+
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~a 82 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVVG 82 (548)
T ss_pred cEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 68999999999999999995 999999999999743 5889999999999999999999999988877788999
Q ss_pred EEecCC-ceeEEEcCCCCceeeccC--CCCCcceeEecccchHHHHHHHhcCC----hhHHHHh-CCCCCCCChHHHHHH
Q 006707 127 VGFAAT-CSLVAVDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYC-GGAVSPEMQPPKLLW 198 (634)
Q Consensus 127 Igis~~-~~~V~~d~~G~pl~~~~~--~~~~~~~i~W~D~Ra~~~~~~l~~~~----~~~~~~t-G~~~~~~~~~~kl~w 198 (634)
||||+| +++|+||++|+|+.+.++ ..+..|+|+|+|.|+.++++++++.. +++++.+ |..+++.++++||+|
T Consensus 83 Igis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~W 162 (548)
T PRK04123 83 IGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKILH 162 (548)
T ss_pred EEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHHH
Confidence 999998 999999999999932111 11223899999999999999998753 3577555 999999999999999
Q ss_pred HHHhchhhHHhhceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCc-CCCCCHHHHHHcC-----
Q 006707 199 VKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDME-ACGWDDEFWEEIG----- 272 (634)
Q Consensus 199 l~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~-~~~Ws~~~L~~~g----- 272 (634)
|++|+||+|+++.+|++++|||.|+|||+.+++..+. ++..++.++ ++|.+ ++.||+++|+.+|
T Consensus 163 l~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~----~~~~as~~~------~~d~~~~~~~s~ell~~~g~~l~~ 232 (548)
T PRK04123 163 VLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVR----SRCAAGHKA------LWHESWGGLPSADFFDALDPLLAR 232 (548)
T ss_pred HHhhCHHHHHHHhHhccHHHHHHHHHhCCCCcccccc----chhhccccc------ccccccCCCCCHHHHHHhccchhh
Confidence 9999999999999999999999999999764222221 122334444 46888 5666999999996
Q ss_pred -CCCcccccccccCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccce
Q 006707 273 -LGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHR 351 (634)
Q Consensus 273 -i~~~l~~~lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~ 351 (634)
|+..+ || +++++++++|+ |++++|+++||++|+||++|+||++|+++|+ |. + +|+
T Consensus 233 ~i~~~l---lP----~l~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~-g~-~--------------~g~ 288 (548)
T PRK04123 233 GLRDKL---FT----ETWTAGEPAGT-LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA-GA-E--------------PGT 288 (548)
T ss_pred hhHhhc---CC----ccccCCCcccc-cCHHHHHHhCCCCCCeEEecchhhhhhhccc-Cc-C--------------CCc
Confidence 76533 35 78899999998 9999999999999999999999999999999 55 4 368
Q ss_pred EEEEecccceeeeeeCcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHH
Q 006707 352 MVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 431 (634)
Q Consensus 352 ~~is~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~ 431 (634)
+++++||++++..+.+++...++.+..+..+..++.|.++++++++|.+++||++.+...+ ....++..+.+.|++|++
T Consensus 289 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 367 (548)
T PRK04123 289 LVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPE-YKDEAEARGKQLLELLTE 367 (548)
T ss_pred EEEEecCceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHh-HHHHHHhcCCcHHHHHHH
Confidence 9999999999888888765434332122223457889999999999999999999874211 111122223467889998
Q ss_pred HHHhhhhhcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006707 432 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511 (634)
Q Consensus 432 ~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~ 511 (634)
++++ +|++++|++|+|||.|+|+|+||+++||.|+|++.+|++.| ++||++||++|.+|++++.|++.
T Consensus 368 ~a~~---------~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~---l~RAvlEgia~~~~~~~e~l~~~ 435 (548)
T PRK04123 368 AAAK---------QPPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPD---IYRALIEATAFGTRAIMECFEDQ 435 (548)
T ss_pred HHHh---------cCCCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHc
Confidence 8876 44799999999999999999999999999999999999998 56799999999999999999987
Q ss_pred CCCccEEEEecCC-CCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhh-hcCcEEeechhh
Q 006707 512 GHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVCMTVGFY 589 (634)
Q Consensus 512 g~~~~~I~~~GG~-a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~-~~~~~~~P~~~~ 589 (634)
+.++++|+++||+ +||++|+||+||+||+||++++..|++++|||++|++++|.|++++++.+.++ ...++|+|.+..
T Consensus 436 g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~~~ 515 (548)
T PRK04123 436 GVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQPDPEN 515 (548)
T ss_pred CCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEecCHHH
Confidence 8888999999999 99999999999999999999999999999999999999999999999888886 566889998776
Q ss_pred HHhhhHHhc
Q 006707 590 LLTYLYLVY 598 (634)
Q Consensus 590 ~~~y~~~~~ 598 (634)
.+.|..++.
T Consensus 516 ~~~y~~~y~ 524 (548)
T PRK04123 516 VARYEQLYQ 524 (548)
T ss_pred HHHHHHHHH
Confidence 666766444
No 5
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=5.1e-83 Score=718.50 Aligned_cols=499 Identities=29% Similarity=0.419 Sum_probs=414.6
Q ss_pred EEEEEecCCcccEEEEEc-CCCcEEEEEEeeecc------ccC------CCccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 006707 56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQI------WKE------GDCIEQSSTDIWHAICAAVDSACSLANVDGE 122 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d-~~g~vl~~~~~~~~~------~~~------~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~ 122 (634)
|+||||+||||+|++||| .+|+++++++.+|+. ++. +|++||||++||+++++++++++++.+.+.+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 789999999999999999 899999999999973 333 7999999999999999999999999877778
Q ss_pred CeEEEEecCC-ceeEEEcCCCCceeeccC--CCCCcceeEecccchHHHHHHHhcCC----hhHHHHhCCCCCCCChHHH
Q 006707 123 EVKGVGFAAT-CSLVAVDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPK 195 (634)
Q Consensus 123 ~I~aIgis~~-~~~V~~d~~G~pl~~~~~--~~~~~~~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~k 195 (634)
+|++|++|+| ||+|+||++|+|+.+..+ ..+..++|+|+|+|+.++++++++.. +.++++||+++++.++++|
T Consensus 82 ~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~k 161 (536)
T TIGR01234 82 DVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAK 161 (536)
T ss_pred HEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHH
Confidence 8999999998 999999999999931000 00111299999999999999998753 5688999999999999999
Q ss_pred HHHHHHhchhhHHhhceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCC--
Q 006707 196 LLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL-- 273 (634)
Q Consensus 196 l~wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi-- 273 (634)
|+|+++|+||+|+++.+|++++|||.|+|||+.. .+.+.+ ++++ ++|...+.||+++|+.+|+
T Consensus 162 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~a--------~~~~------l~~~~w~~~~~~~l~~~g~~~ 226 (536)
T TIGR01234 162 ILQITEEDPAIYQAADRWIELADWIVAQLSGDIR-RGRCTA--------GYKA------LWHESWGYPSASFFDELNPIL 226 (536)
T ss_pred HHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcc-ccchhc--------ccce------eccccccCCCHHHHHHhcchh
Confidence 9999999999999999999999999999999875 333432 2222 2344344459999999986
Q ss_pred ----CCcccccccccCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhcc
Q 006707 274 ----GDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 349 (634)
Q Consensus 274 ----~~~l~~~lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~ 349 (634)
|+. +.|+++++++++|+ |++++|+++||++|+||++|++|++|+++|+ +..+ +
T Consensus 227 ~~~lp~~-------~~p~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~--------------~ 283 (536)
T TIGR01234 227 NRHLPDK-------LFTDIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAA-GIAQ--------------P 283 (536)
T ss_pred hhhhhhh-------cCCceecCCCcccc-cCHHHHHHhCCCCCCeEEecchhHhhhhhcc-cccc--------------C
Confidence 432 22378999999998 9999999999999999999999999999998 5553 4
Q ss_pred ceEEEEecccceeeeeeCcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHH
Q 006707 350 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL 429 (634)
Q Consensus 350 g~~~is~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l 429 (634)
|++++++|||.++..+.+++...++....+..+..++.|..+++++++|.+++||++++... +.....+..+.+.|+.|
T Consensus 284 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~l 362 (536)
T TIGR01234 284 GALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPP-ELKTEANASQKQLHEAL 362 (536)
T ss_pred CcEEEEEccceEEEEecCccccCCceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcch-HHHHHHHhcCCCHHHHH
Confidence 78999999999988777665443332111111244678999999999999999999987432 11111122234568888
Q ss_pred HHHHHhhhhhcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006707 430 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 509 (634)
Q Consensus 430 ~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~ 509 (634)
++.+++ +|+|++|++|+|||.|+|+|+||+++||+|+|++.+|++.| ++||++||++|.+|++++.|+
T Consensus 363 ~~~a~~---------~p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~---~~RAvlEgia~~~~~~l~~l~ 430 (536)
T TIGR01234 363 SEAAAK---------QPSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPL---LYRALIEATAFGTRMIMETFT 430 (536)
T ss_pred HHHHHh---------CCCCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 888775 34799999999999999999999999999999999999988 667999999999999999998
Q ss_pred hCCCCccEEEEecCC-CCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhh-hcCcEEeech
Q 006707 510 AHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVCMTVG 587 (634)
Q Consensus 510 ~~g~~~~~I~~~GG~-a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~-~~~~~~~P~~ 587 (634)
+.|.++++|+++||+ ++|++|+||+||+||+||++++..|++++|||++|++++|.|++++++.+.++ ...++|+|.+
T Consensus 431 ~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P~~ 510 (536)
T TIGR01234 431 DSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTPCS 510 (536)
T ss_pred hcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECCCh
Confidence 878889999999999 99999999999999999999999999999999999999999999999888886 6789999988
Q ss_pred hhHHhhhHHhccccchhhhhhh
Q 006707 588 FYLLTYLYLVYITRDKEAKICQ 609 (634)
Q Consensus 588 ~~~~~y~~~~~~~~~~~~~~~~ 609 (634)
...+.|..++. +++++++
T Consensus 511 ~~~~~y~~~y~----~y~~l~~ 528 (536)
T TIGR01234 511 ENAQRYEQLYA----RYQELAM 528 (536)
T ss_pred hHHHHHHHHHH----HHHHHHH
Confidence 77777777443 4444443
No 6
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=3e-83 Score=715.06 Aligned_cols=467 Identities=21% Similarity=0.306 Sum_probs=401.7
Q ss_pred CcEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~-~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
++|+||||+|||++|++++|.+|+++++.+++|+.. +.+|++||||++||+++++++++++++.+.++++|.+||+|+|
T Consensus 4 ~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 83 (498)
T PRK00047 4 KKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITNQ 83 (498)
T ss_pred cCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEecC
Confidence 469999999999999999999999999999999864 4889999999999999999999999988877889999999998
Q ss_pred -ceeEEEcCC-CCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHH
Q 006707 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (634)
Q Consensus 133 -~~~V~~d~~-G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (634)
+++|+||++ |+|+ +|+|+|+|.|+.++++++.+.. ++++++||+++++.++++||+|+++|+||+|+
T Consensus 84 ~~~~v~~D~~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~ 154 (498)
T PRK00047 84 RETTVVWDKETGRPI---------YNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARE 154 (498)
T ss_pred cceEEEEECCCCcCC---------cccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHH
Confidence 999999965 9999 8999999999999999998763 35899999999999999999999999999988
Q ss_pred hhc----eeecchhHHHhhhhCCC-ccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccc
Q 006707 209 MVF----RWMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (634)
Q Consensus 209 ~~~----~~~~~~dyl~~~LTG~~-~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~ 283 (634)
++. +|++++|||.|+|||.. ..+|.|. ||+|+ ++|+++++||+++|+.+|||+. +||
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~--------As~t~------l~d~~~~~W~~ell~~~gi~~~---~lP- 216 (498)
T PRK00047 155 RAEKGELLFGTIDTWLVWKLTGGKVHVTDYTN--------ASRTM------LFNIHTLDWDDELLELLDIPRS---MLP- 216 (498)
T ss_pred HHhcCCeEEeChHHhHhhhhcCCCeeEeechH--------Hhhhh------ccccccCccCHHHHHhcCCCHH---HCC-
Confidence 775 47889999999999752 3355554 44555 3699999999999999999973 347
Q ss_pred cCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceee
Q 006707 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (634)
Q Consensus 284 l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~ 363 (634)
+++++++++|+ |+++ +|+.+||||++|++|++|+++|+ |..+ +|++++++|||+++.
T Consensus 217 ---~i~~~g~~~G~-v~~~----~~l~~g~pV~~g~~D~~aa~~G~-G~~~--------------~g~~~~~~GTs~~~~ 273 (498)
T PRK00047 217 ---EVRPSSEVYGK-TNPY----GFFGGEVPIAGIAGDQQAALFGQ-LCFE--------------PGMAKNTYGTGCFML 273 (498)
T ss_pred ---CccCCcccccc-cccc----ccCCCCceEEEEccHHHHHHHhC-cCCC--------------CCceEEeeccceEEE
Confidence 78899999998 9987 67779999999999999999998 5553 378999999999876
Q ss_pred eee-CcccccCc-ccccccccccCC--eeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhh
Q 006707 364 AVS-RNKLFIPG-VWGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE 439 (634)
Q Consensus 364 ~~~-~~p~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~ 439 (634)
+.+ ++|..++. ....++ +..++ .|+.++++.++|.+++||+++++.. ..+++++++++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~l~W~~~~~~~~------------~~~~~~~~~a~~---- 336 (498)
T PRK00047 274 MNTGEKAVKSENGLLTTIA-WGIDGKVVYALEGSIFVAGSAIQWLRDGLKII------------SDASDSEALARK---- 336 (498)
T ss_pred EecCCccccCCCCceeEEE-EEcCCCcEEEEEeeHhhHHHHHHHHHHHhcCC------------CCHHHHHHHHhc----
Confidence 666 45665542 221122 23344 6999999999999999999987421 113445555543
Q ss_pred cCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEE
Q 006707 440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL 518 (634)
Q Consensus 440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g~~~~~I 518 (634)
+ ++++|++|+|||.|+|+|+||+++||.|+|++.+|++.| ++||++||++|.+|++++.|++ .|.++++|
T Consensus 337 -----~-~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~---l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i 407 (498)
T PRK00047 337 -----V-EDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEH---IIRATLESIAYQTRDVLDAMQADSGIRLKEL 407 (498)
T ss_pred -----C-CCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 2 377899999999999999999999999999999999988 5679999999999999999985 47789999
Q ss_pred EEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhHHhhhHHhc
Q 006707 519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYLLTYLYLVY 598 (634)
Q Consensus 519 ~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~~~y~~~~~ 598 (634)
+++||++||++|+||+|||||+||++++..|++++|||++|++++|.|++++++ +++.+..++|+|.+...+ |..++.
T Consensus 408 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P~~~~~~-y~~~~~ 485 (498)
T PRK00047 408 RVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEPQMDEEE-REKLYA 485 (498)
T ss_pred EEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-HhhcCCCeEECCCCCHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 778888999999887766 776444
No 7
>PLN02295 glycerol kinase
Probab=100.00 E-value=1.4e-82 Score=711.31 Aligned_cols=467 Identities=19% Similarity=0.280 Sum_probs=397.5
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC----eEEEEec
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE----VKGVGFA 130 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~-~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~----I~aIgis 130 (634)
|+||||+|||++|++|||.+|+++++++.+|+.. +++||+||||++||+++++++++++++.+.++++ |.+||+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s 80 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT 80 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence 5899999999999999999999999999999864 4899999999999999999999999988776666 7999999
Q ss_pred CC-ceeEEE-cCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC----hhHHHHhCCCCCCCChHHHHHHHHHhch
Q 006707 131 AT-CSLVAV-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQ 204 (634)
Q Consensus 131 ~~-~~~V~~-d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~wl~~~~P 204 (634)
+| ||+|+| |++|+|+ +|+|+|+|.|+.++++++++.. +.++++||+++++.++++||+|+++|+|
T Consensus 81 ~q~~~~v~~dd~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P 151 (512)
T PLN02295 81 NQRETTVAWSKSTGRPL---------YNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVD 151 (512)
T ss_pred cCcceEEEEECCCCCCc---------ccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCH
Confidence 98 999999 5899999 8999999999999999998753 2466999999999999999999999999
Q ss_pred hhHHhh----ceeecchhHHHhhhhCCC----ccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCc
Q 006707 205 ESWSMV----FRWMDLSDWLSYRATGDD----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 276 (634)
Q Consensus 205 e~~~~~----~~~~~~~dyl~~~LTG~~----~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~ 276 (634)
|+|+++ .+|++++|||.|+|||+. ..+|.|+ ||+|++ +|+++++||+++|+.+|||..
T Consensus 152 ~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~--------As~t~l------~D~~~~~W~~ell~~~gi~~~ 217 (512)
T PLN02295 152 AVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTN--------ASRTML------MNLKTLDWDKPTLEALGIPAE 217 (512)
T ss_pred HHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHH--------hHHhhc------cCcccCcCCHHHHHHcCCCHH
Confidence 999655 489999999999999943 2356554 455553 699999999999999999974
Q ss_pred ccccccccCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEe
Q 006707 277 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVC 356 (634)
Q Consensus 277 l~~~lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~ 356 (634)
+ || +++++++++|+ |++++++ +|+||++|++|++|+++|+ |. + +|++.+++
T Consensus 218 ~---lP----~l~~~~~~~G~-v~~~~a~-----~g~pV~~g~~D~~aa~~G~-G~-~--------------~g~~~~~~ 268 (512)
T PLN02295 218 I---LP----KIVSNSEVIGT-IAKGWPL-----AGVPIAGCLGDQHAAMLGQ-RC-R--------------PGEAKSTY 268 (512)
T ss_pred H---CC----CcccCccceec-ccccccc-----CCCcEEEEechHHHHHhhC-cC-C--------------CCCeEEEE
Confidence 3 47 78889999998 9987765 5999999999999999998 55 4 36899999
Q ss_pred cccceeeeeeCcc-cccC-ccccccccc---ccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHH
Q 006707 357 GTSTCHMAVSRNK-LFIP-GVWGPFWSA---MVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 431 (634)
Q Consensus 357 GTs~~~~~~~~~p-~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~ 431 (634)
||+..+.+.++.+ ..++ +....+++. ..++.|+.++++.++|.+++||++.+... ..++++++
T Consensus 269 GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~~~~ 336 (512)
T PLN02295 269 GTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGII------------KSASEIEA 336 (512)
T ss_pred cccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCC------------CCHHHHHH
Confidence 9998866665543 3333 222112211 12788999999999999999999987421 12445666
Q ss_pred HHHhhhhhcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 006707 432 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511 (634)
Q Consensus 432 ~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~ 511 (634)
++++ + +|++|++|+|||.|+|+|+||+++||.|+|++..|++.| ++||++||++|.+|++++.|++.
T Consensus 337 ~a~~---------~-~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~---l~RAvlEgia~~~r~~l~~l~~~ 403 (512)
T PLN02295 337 LAAT---------V-DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAH---IARAVLESMCFQVKDVLDAMRKD 403 (512)
T ss_pred HHHh---------C-CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 6654 2 377899999999999999999999999999999999999 56799999999999999999864
Q ss_pred ------CCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEee
Q 006707 512 ------GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMT 585 (634)
Q Consensus 512 ------g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P 585 (634)
+.++++|+++||+++|++|+||+|||||+||+++...|++++|||++|++++|.|++++++.+++++..++|+|
T Consensus 404 ~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P 483 (512)
T PLN02295 404 AGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRP 483 (512)
T ss_pred hcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECC
Confidence 33688999999999999999999999999999999999999999999999999999998876688889999999
Q ss_pred chhhHHhhhHHhccc
Q 006707 586 VGFYLLTYLYLVYIT 600 (634)
Q Consensus 586 ~~~~~~~y~~~~~~~ 600 (634)
.++..+ |..++..+
T Consensus 484 ~~~~~~-y~~~y~~~ 497 (512)
T PLN02295 484 KLDEEE-RAKRYASW 497 (512)
T ss_pred CCCHHH-HHHHHHHH
Confidence 887777 77644433
No 8
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=5.9e-82 Score=705.27 Aligned_cols=476 Identities=22% Similarity=0.346 Sum_probs=402.7
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCC--CeEEEEecC
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGE--EVKGVGFAA 131 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~--~I~aIgis~ 131 (634)
+|+||||+|||++|++|||.+|+++++.+.+++... .+|++||||++||+++++++++++++.+.... +|++||+|+
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis~ 81 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGITN 81 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEeec
Confidence 489999999999999999999999999999998654 89999999999999999999999998765555 899999999
Q ss_pred C-ceeEEEcC-CCCceeeccCCCCCcceeEecccchHHHHHHHhcCC---hhHHHHhCCCCCCCChHHHHHHHHHhchhh
Q 006707 132 T-CSLVAVDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (634)
Q Consensus 132 ~-~~~V~~d~-~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~ 206 (634)
| +++|+||+ +|+|+ +|+|+|+|+|+.++++++.+.. +.++++||+++++.++++||+|+++|+||+
T Consensus 82 q~~~~v~~D~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~ 152 (504)
T PTZ00294 82 QRETVVAWDKVTGKPL---------YNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPAV 152 (504)
T ss_pred CcceEEEEECCCCCCc---------ccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHHH
Confidence 8 99999987 59999 8999999999999999998764 346699999999999999999999999999
Q ss_pred HHhhce----eecchhHHHhhhhC--CCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCccccc
Q 006707 207 WSMVFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 280 (634)
Q Consensus 207 ~~~~~~----~~~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~ 280 (634)
|+++++ +++++|||.|+||| +.. +|.|. ||+|++ +|+++++|++++|+.+||+.. +
T Consensus 153 ~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~--------As~tgl------~D~~~~~W~~~ll~~~gi~~~---~ 214 (504)
T PTZ00294 153 KDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTN--------ASRTFL------MNIKTLKWDEELLNKFGIPKE---T 214 (504)
T ss_pred HHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhh--------hHHhhc------cCcccCccCHHHHHHhCCCHH---H
Confidence 996655 99999999999999 653 45543 445553 699999999999999999973 3
Q ss_pred ccccCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccc
Q 006707 281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST 360 (634)
Q Consensus 281 lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~ 360 (634)
|| +++++++++|+ |++ +.+|+++|+||++|++|++|+++|+ |+.+ +|++.+++|||+
T Consensus 215 LP----~v~~~~~~~G~-l~~---~~~~~~~g~pV~~g~~D~~aa~~G~-g~~~--------------~g~~~~~~GTs~ 271 (504)
T PTZ00294 215 LP----EIKSSSENFGT-ISG---EAVPLLEGVPITGCIGDQQAALIGH-GCFE--------------KGDAKNTYGTGC 271 (504)
T ss_pred CC----CccCCccccCc-cch---hhcCCCCCCcEEEEecHHHHHHHhC-cCCC--------------CCceEEeeccce
Confidence 46 78899999998 984 5678899999999999999999998 5543 378999999998
Q ss_pred eeeeee-CcccccC-ccccccccccc---CCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHh
Q 006707 361 CHMAVS-RNKLFIP-GVWGPFWSAMV---PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLES 435 (634)
Q Consensus 361 ~~~~~~-~~p~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~ 435 (634)
++.+.+ +++..++ +.+..+++... ++.|+.++++.++|.+++||++.+... ..|+++++++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~ 339 (504)
T PTZ00294 272 FLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLI------------SHPSEIEKLARS 339 (504)
T ss_pred EEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCC------------CCHHHHHHHHHh
Confidence 865544 3454444 22222232221 458999999999999999999987421 125566776654
Q ss_pred hhhhcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Q 006707 436 MIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK 514 (634)
Q Consensus 436 ~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g~~ 514 (634)
+ +|++|++|+|||.|+|+|+||+++||.|+|++.+|++.| ++||++||++|.+|++++.|++ .|.+
T Consensus 340 ---------~-~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~---i~rAvlEgia~~~r~~~~~l~~~~g~~ 406 (504)
T PTZ00294 340 ---------V-KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAH---IVRAALEAIALQTNDVIESMEKDAGIE 406 (504)
T ss_pred ---------C-CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 2 378899999999999999999999999999999999998 5679999999999999999987 4778
Q ss_pred ccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhh-cCcEEeechhhHHhh
Q 006707 515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA-AGQVCMTVGFYLLTY 593 (634)
Q Consensus 515 ~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~-~~~~~~P~~~~~~~y 593 (634)
+++|+++||+++|++|+||+||+||+||++++..|++++|||++|++++|.|+|++++. +++. ..++|+|.+...+ |
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~-~~~~~~~~~~~P~~~~~~-y 484 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVK-KLIRRSNSTFSPQMSAEE-R 484 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHH-HhccCCCcEECCCCCHHH-H
Confidence 89999999999999999999999999999999999999999999999999999999886 4444 6799999877666 7
Q ss_pred hHHhccccchhhhhhhhH
Q 006707 594 LYLVYITRDKEAKICQLI 611 (634)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~ 611 (634)
..++. +|+++-+.+
T Consensus 485 ~~~~~----~~~~~~~~~ 498 (504)
T PTZ00294 485 KAIYK----EWNKAVERS 498 (504)
T ss_pred HHHHH----HHHHHHHHH
Confidence 76443 344444433
No 9
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=5.8e-82 Score=707.88 Aligned_cols=479 Identities=22% Similarity=0.273 Sum_probs=411.5
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccc---cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW---KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~---~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
+|+||||+|||++|+++||.+|++++..+.+|+.. +.+|++||||++||+++++++++++++.+++..+|.+||+|+
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s~ 82 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSATS 82 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEEC
Confidence 59999999999999999999999999999888643 268999999999999999999999988777778899999999
Q ss_pred C-ceeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC----hhHHHHhCCCCCCCChHHHHHHHHHhchhh
Q 006707 132 T-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (634)
Q Consensus 132 ~-~~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~ 206 (634)
| +++|+||++|+|+ .+ +.|+|.|+.++++++++.. ++++++||.++ +.++++||+|+++|+||+
T Consensus 83 ~~~~~v~~D~~g~pl---------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~ 151 (520)
T PRK10939 83 MREGIVLYDRNGTEI---------WA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPDI 151 (520)
T ss_pred CcccEEEECCCCCEe---------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcHH
Confidence 8 9999999999999 44 5799999999999998753 46889999875 678999999999999999
Q ss_pred HHhhceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCc
Q 006707 207 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR 286 (634)
Q Consensus 207 ~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~ 286 (634)
|+++.+|++++|||.|+|||+.. +|.|. |++|++ ||+++++||+++|+.+||+.. +||
T Consensus 152 ~~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------As~tgl------~d~~~~~W~~~ll~~~gi~~~---~lP---- 209 (520)
T PRK10939 152 YRQAHTITMISDWIAYMLSGELA-VDPSN--------AGTTGL------LDLVTRDWDPALLEMAGLRAD---ILP---- 209 (520)
T ss_pred HHHhheEechhHhhhheeeCcee-eEhhh--------hhceee------eecCCCCCCHHHHHHcCCCHH---HCC----
Confidence 99999999999999999999974 45543 445553 689999999999999999974 346
Q ss_pred ccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeee
Q 006707 287 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS 366 (634)
Q Consensus 287 ~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~ 366 (634)
+++++++++|+ |++++|+.+||++||||++|++|++|+++|+ |+.+ +|++++++|||..+..++
T Consensus 210 ~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~ 273 (520)
T PRK10939 210 PVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL-GVVR--------------PGQTAVLGGTFWQQVVNL 273 (520)
T ss_pred CCccCCceeee-ecHHHHHhhCCCCCCcEEEeCchHHHHHhhc-Cccc--------------CCcEEEeecCcceeEEec
Confidence 78899999998 9999999999999999999999999999998 5554 368999999999887777
Q ss_pred CcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCcc
Q 006707 367 RNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (634)
Q Consensus 367 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (634)
+++..++........+..++.|..++.+.++|.+++||+++++.++.. .++..+.+.|++|++++++ +|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~---------~~ 342 (520)
T PRK10939 274 PAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRDAFCAEEKL--LAERLGIDAYSLLEEMASR---------VP 342 (520)
T ss_pred cccccCccccceeceeeeCCcceEeeeeccceeeeehHHhhhchHHHH--HHHhcCCCHHHHHHHHHhh---------CC
Confidence 776655532111223566888999999999999999999987543211 1222345678999988876 34
Q ss_pred CCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEec
Q 006707 447 ALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS---SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG 522 (634)
Q Consensus 447 ~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~---~~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g~~~~~I~~~G 522 (634)
+|++|+ +|||.|+|.|.+++++||+|+|++.+| ++.| ++||++||++|.+|.+++.+++ .+.++++|+++|
T Consensus 343 ~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~---~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~G 417 (520)
T PRK10939 343 VGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKAT---LFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAG 417 (520)
T ss_pred CCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 788887 699999987555568999999999987 6666 6789999999999999999987 477899999999
Q ss_pred CCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhHHhhhHHhc
Q 006707 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYLLTYLYLVY 598 (634)
Q Consensus 523 G~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~~~y~~~~~ 598 (634)
|+++|++|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+.+..++|+|.+...+.|..++.
T Consensus 418 Gga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~y~ 493 (520)
T PRK10939 418 GGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLAETGERLVRWERTFEPNPENHELYQEAKE 493 (520)
T ss_pred CcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHHHHHHHHcccCceECcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988898899999998777777776443
No 10
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=1.2e-81 Score=657.50 Aligned_cols=461 Identities=23% Similarity=0.362 Sum_probs=394.6
Q ss_pred CcEEEEEecCCcccEEEEEcCCCcEEEEEEeeec-cccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~-~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
++|++.||.||||+|+++||++|++++.++.+++ +||+|||+||||+++|+++..++++++.+.++.+.+|++|||+.|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ 83 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ 83 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence 4799999999999999999999999999999995 577999999999999999999999999999999999999999999
Q ss_pred -ceeEEEcCC-CCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHH
Q 006707 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (634)
Q Consensus 133 -~~~V~~d~~-G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (634)
+++|+||++ |+|+ .|+|.|+|+|+.+.|++|.+.. +.+.+.||..+.|+|++.||+|+.+|.|.+.+
T Consensus 84 RETtvvWdk~tG~Pi---------~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~ 154 (499)
T COG0554 84 RETTVVWDKETGKPI---------YNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARE 154 (499)
T ss_pred ceeEEEEeCCCCCCc---------ccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhh
Confidence 999999987 9999 8999999999999999999985 56889999999999999999999999998777
Q ss_pred hh----ceeecchhHHHhhhhCCCc-cccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccc
Q 006707 209 MV----FRWMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (634)
Q Consensus 209 ~~----~~~~~~~dyl~~~LTG~~~-~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~ 283 (634)
++ ..|.++.+||.|+|||... .+|+| |||||+|| |+++.+||+++|+.++||..++ |
T Consensus 155 ~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~s--------NASRT~L~------ni~~l~WD~elL~il~Ip~~~L---P- 216 (499)
T COG0554 155 RAEKGELLFGTIDTWLIWKLTGGKVHVTDYS--------NASRTMLF------NIHSLEWDDELLELLGIPRSML---P- 216 (499)
T ss_pred HhhcCCeEEecchhhheeeccCCceeccccc--------hhHHHhcc------cccccCCCHHHHHHhCCChHhC---c-
Confidence 76 5799999999999999664 56665 68899875 8999999999999999998654 7
Q ss_pred cCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceee
Q 006707 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (634)
Q Consensus 284 l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~ 363 (634)
++.++.++.|. ... -.+...+||..-.||||||++|.+| .+|| +.|+||||+++ +.+++|+-.+
T Consensus 217 ---ev~~ss~~~G~-t~~-----~~~g~~vPI~g~~GDQQAALfGq~c-~~pG---~~K~TYGTG~F-~l~ntG~~~~-- 280 (499)
T COG0554 217 ---EVRPSSEIYGV-TGI-----GFLGAEVPITGVAGDQQAALFGQGC-FEPG---MAKNTYGTGCF-LLMNTGEKPV-- 280 (499)
T ss_pred ---ccccccccccc-ccc-----cccCCceeeccccchhHHHHhhccc-CCcC---cccccccccee-eeeccCCccc--
Confidence 66677788885 443 2344679999999999999999965 4565 89999999887 5667776421
Q ss_pred eeeCcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCC
Q 006707 364 AVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP 443 (634)
Q Consensus 364 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p 443 (634)
.++......-.|. ....-.|.+||.+..+|++++|||+.+.. .+...+.+.++.+.
T Consensus 281 -~S~~~LLtTIa~~----l~gk~~YALEGsif~aGaavqWLrd~L~~------------i~~a~~~e~~A~~~------- 336 (499)
T COG0554 281 -RSENGLLTTIAWG----LDGKVTYALEGSIFVAGAAVQWLRDGLGL------------IDDASDSEELAESV------- 336 (499)
T ss_pred -cCCCCceeEEEec----cCCeEEEEEecceeehhhHHHHHHHhcCc------------cCchhHHHHHHhcc-------
Confidence 1222111111121 11134699999999999999999997653 12223445555542
Q ss_pred CccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCccEEEEec
Q 006707 444 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG 522 (634)
Q Consensus 444 ~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g~~~~~I~~~G 522 (634)
..++|++|+|.|.|..+||||+++||.|+||+..++++|++ ||++|++||+.|.+++.|++ .+.++++++|.|
T Consensus 337 ---~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~---RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDG 410 (499)
T COG0554 337 ---EDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIA---RATLESIAYQTRDVLEAMEKDSGIKLTRLRVDG 410 (499)
T ss_pred ---CCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcC
Confidence 36789999999999999999999999999999999999955 59999999999999999986 556899999999
Q ss_pred CCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechh
Q 006707 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGF 588 (634)
Q Consensus 523 G~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~ 588 (634)
|+++|+++||++||++|+||+++...|.+|+|||++|+.++|.|+|++|.. ......+.|+|.-+
T Consensus 411 G~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~ 475 (499)
T COG0554 411 GASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMD 475 (499)
T ss_pred ccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCC
Confidence 999999999999999999999999999999999999999999999999874 66688999999543
No 11
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=3.7e-81 Score=693.45 Aligned_cols=458 Identities=21% Similarity=0.233 Sum_probs=395.9
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeecc--c-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI--W-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~--~-~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
+|+||||+|||++|+++||.+|+++++++.+++. . +.+|++||||++||+++++++++++++. ...+|.+|+||+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~ 79 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TECHIRGITVTT 79 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence 4899999999999999999999999999998763 2 3789999999999999999999999864 346799999999
Q ss_pred C-ceeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHH
Q 006707 132 T-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (634)
Q Consensus 132 ~-~~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~ 208 (634)
| +++|+||++|+|+ +|+|+|+|+|+.++++++++.. ++++++||+++.+.++++||+|+++|+||+|+
T Consensus 80 ~~~~~v~~D~~G~pl---------~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~ 150 (470)
T PRK10331 80 FGVDGALVDKQGNLL---------YPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLE 150 (470)
T ss_pred cccceEEECCCcCCc---------cCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHH
Confidence 8 9999999999999 8999999999999999998865 56899999999999999999999999999999
Q ss_pred hhceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCccc
Q 006707 209 MVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288 (634)
Q Consensus 209 ~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~ 288 (634)
++++|++++|||.|+|||+.. +|.|. ||+|+ +||+++++|++++++.+||++. +|| ++
T Consensus 151 ~~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~------l~d~~~~~W~~ell~~~gi~~~---~lP----~i 208 (470)
T PRK10331 151 QAHAWLFISSLINHRLTGEFT-TDITM--------AGTSQ------MLDIQQRDFSPEILQATGLSRR---LFP----RL 208 (470)
T ss_pred HhhhhcCHHHHHHHhhcCccc-cchhh--------cccee------eeecccCCCCHHHHHHcCCCHH---HCC----Cc
Confidence 999999999999999999875 45554 34444 4699999999999999999973 346 78
Q ss_pred ccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCc
Q 006707 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 368 (634)
Q Consensus 289 ~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~ 368 (634)
+++++++|+ |++++|+++||++|+||++|+||++|+++|+ |.. .+++++++|||.++..++++
T Consensus 209 ~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~---------------~g~~~~~~GT~~~~~~~~~~ 271 (470)
T PRK10331 209 VEAGEQIGT-LQPSAAALLGLPVGIPVISAGHDTQFALFGS-GAG---------------QNQPVLSSGTWEILMVRSAQ 271 (470)
T ss_pred ccccccccc-cCHHHHHHhCCCCCCeEEEccccHHHHHhCC-CCC---------------CCCEEEecchhhhheeecCC
Confidence 899999998 9999999999999999999999999999998 543 36799999999998887776
Q ss_pred ccccCc--cccc-ccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCc
Q 006707 369 KLFIPG--VWGP-FWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 445 (634)
Q Consensus 369 p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~ 445 (634)
|..+.. .... +..+..++.|..++....+| +++|+++++.. +...|+.|++++++ +
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~W~~~~~~~-----------~~~~y~~l~~~a~~---------~ 330 (470)
T PRK10331 272 VDTSLLSQYAGSTCELDSQSGLYNPGMQWLASG-VLEWVRKLFWT-----------AETPYQTMIEEARA---------I 330 (470)
T ss_pred CcccccccccccceeccccCceeeechhhHHHH-HHHHHHHHhcc-----------cCchHHHHHHHHhc---------C
Confidence 654432 1011 11123456676555444444 89999998742 12468888888765 3
Q ss_pred cCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEecCC
Q 006707 446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 524 (634)
Q Consensus 446 ~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g~~~~~I~~~GG~ 524 (634)
|+|++|++|+|+|.|+| ||+|+|++.+|++.| ++||++||++|.+|++++.|++. +.++++|+++||+
T Consensus 331 ~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGg 399 (470)
T PRK10331 331 PPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGH---FYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGG 399 (470)
T ss_pred CCCCCceEecccccccC--------ceeEECCCCCcCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Confidence 47999999999999987 899999999999988 56799999999999999999876 4578999999999
Q ss_pred CCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhHHhhhH
Q 006707 525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYLLTYLY 595 (634)
Q Consensus 525 a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~~~y~~ 595 (634)
+||++|+||+|||||+||++++..|++++|||++|++++|.|+|++++.+.+.+..++|+|. .+.+.|..
T Consensus 400 a~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~~~~~~~~P~-~~~~~y~~ 469 (470)
T PRK10331 400 SRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMKYQYRYFYPQ-TEPEFIEE 469 (470)
T ss_pred ccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHhhcceeECCC-ccHhhhhc
Confidence 99999999999999999999999999999999999999999999999988998888999998 66777763
No 12
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=7.6e-81 Score=694.86 Aligned_cols=466 Identities=22% Similarity=0.334 Sum_probs=401.7
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~-~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~- 132 (634)
+|+||||+|||++|++++|.+|+++++.+.+++.. +.+|++||||++||+++.+++++++++.++++++|.+|||++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~ 80 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR 80 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence 48999999999999999999999999999999864 4889999999999999999999999998877789999999998
Q ss_pred ceeEEEcCC-CCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHHh
Q 006707 133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (634)
Q Consensus 133 ~~~V~~d~~-G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (634)
+++|+||++ |+|+ +|+|+|+|.|+.++++++.+.. ++++++||.++++.++++||+|+++|+||+|++
T Consensus 81 ~~~v~~D~~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~ 151 (493)
T TIGR01311 81 ETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREA 151 (493)
T ss_pred ceEEEEECCCCcCc---------ccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHH
Confidence 999999976 9999 8999999999999999998865 578999999999999999999999999999998
Q ss_pred hce----eecchhHHHhhhhC--CCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccc
Q 006707 210 VFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (634)
Q Consensus 210 ~~~----~~~~~dyl~~~LTG--~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~ 283 (634)
+++ |++++|||.|+||| +.. +|.+. |++|+ +||+++++|++++|+.+||++. +||
T Consensus 152 ~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~--------As~t~------l~d~~~~~W~~~~l~~~gi~~~---~lP- 212 (493)
T TIGR01311 152 AERGELLFGTIDTWLIWNLTGGKVHV-TDVTN--------ASRTM------LFNIHTLDWDDELLELFGIPRE---ILP- 212 (493)
T ss_pred hhcCCeEEECHhHhhhhhccCCceEE-eccch--------hhhhh------cccccccccCHHHHHHcCCCHH---HCC-
Confidence 764 88999999999999 653 55554 34444 4699999999999999999973 346
Q ss_pred cCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceee
Q 006707 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (634)
Q Consensus 284 l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~ 363 (634)
+++++++++|+ |+++ |+++||||++|++|++|+++|+ ++.+ ++++.+++||++++.
T Consensus 213 ---~l~~~g~~~G~-v~~~-----~l~~g~pV~~g~~D~~aa~~G~-g~~~--------------~g~~~~~~GTs~~~~ 268 (493)
T TIGR01311 213 ---EVRSSSEVYGY-TDPG-----LLGAEIPITGVLGDQQAALFGQ-ACFK--------------PGQAKNTYGTGCFLL 268 (493)
T ss_pred ---CccCCccceec-cccc-----ccCCCceEEEecccHHHHHhhC-cCCC--------------CCceEEeecccceEe
Confidence 78899999998 9986 7779999999999999999998 5554 378999999998865
Q ss_pred eeeC-cccccC-cccccccccccCC---eeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhh
Q 006707 364 AVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH 438 (634)
Q Consensus 364 ~~~~-~p~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~ 438 (634)
+.+. .+..++ +....+++ ..++ .|+.++++.++|.+++||++.++.. ..++++++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~--- 332 (493)
T TIGR01311 269 MNTGEKPVISKHGLLTTVAY-QLGGKKPVYALEGSVFVAGAAVQWLRDNLKLI------------KHAAESEALARS--- 332 (493)
T ss_pred eecCCccccCCCCceEEEEE-ecCCCCceEEEEeehhhhHHHHHHHHHHhCCC------------CCHHHHHHHHhc---
Confidence 5443 344443 22212222 2333 4999999999999999999987521 224556665543
Q ss_pred hcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccE
Q 006707 439 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDT 517 (634)
Q Consensus 439 ~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g~~~~~ 517 (634)
+ +|++|++|+|||.|+|+|+||+++||+|+|++.+|++.| ++||++||++|.+|.+++.|++. +.++++
T Consensus 333 ------~-~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~---l~rAvlEgia~~~~~~~~~l~~~~g~~~~~ 402 (493)
T TIGR01311 333 ------V-EDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAH---IARAALEAIAFQTRDVLEAMEKDAGVEITK 402 (493)
T ss_pred ------C-CCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 2 478899999999999999999999999999999999988 56799999999999999999864 778899
Q ss_pred EEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhHHhhhHHh
Q 006707 518 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYLLTYLYLV 597 (634)
Q Consensus 518 I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~~~y~~~~ 597 (634)
|+++||++||++|+||+|||||+||++++..|++++|||++|++++|.|+|++++ +++++..++|+|.++..+ |..++
T Consensus 403 i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P~~~~~~-y~~~~ 480 (493)
T TIGR01311 403 LRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALWRVEKTFEPEMDEEE-REARY 480 (493)
T ss_pred EEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhcCCCcEECCCCCHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 888899999999877666 87755
Q ss_pred ccc
Q 006707 598 YIT 600 (634)
Q Consensus 598 ~~~ 600 (634)
..+
T Consensus 481 ~~~ 483 (493)
T TIGR01311 481 AGW 483 (493)
T ss_pred HHH
Confidence 433
No 13
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=1.7e-80 Score=691.45 Aligned_cols=468 Identities=28% Similarity=0.426 Sum_probs=417.5
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-cee
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL 135 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~~~ 135 (634)
||||+|||++|++|+|.+|+++++.+.+++... .+|+.||||++||+++++++++++++.+.+..+|.+||+++| +|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~ 80 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL 80 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence 699999999999999999999999999998654 899999999999999999999999988777789999999998 999
Q ss_pred EEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHHhhcee
Q 006707 136 VAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213 (634)
Q Consensus 136 V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~ 213 (634)
|+||++|+|+ .|.++|+|.|+.++++++++.. +.+++.+|+.+.+.++++||+|+++|+||+|+++.+|
T Consensus 81 v~~d~~g~~l---------~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~ 151 (481)
T TIGR01312 81 VLLDANGEVL---------RPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKV 151 (481)
T ss_pred EEECCCcCCC---------ccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhee
Confidence 9999999999 7899999999999999888764 5788999999999999999999999999999999999
Q ss_pred ecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccccCCC
Q 006707 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293 (634)
Q Consensus 214 ~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~g~ 293 (634)
++++|||.|+|||+.. ++.+. |++|++ +|+++++|++++|+.+|||+. +|| +++++++
T Consensus 152 ~~~~~yi~~~LtG~~~-~d~t~--------as~tgl------~d~~~~~W~~~~l~~~gi~~~---~Lp----~iv~~~~ 209 (481)
T TIGR01312 152 MLPKDYLRYRLTGEYV-TEYSD--------ASGTGW------FDVAKRAWSKELLDALDLPES---QLP----ELIESSE 209 (481)
T ss_pred eCchHHHhhhhcCCee-eeHHH--------hhcccc------cccCCCCCCHHHHHHhCCCHH---HCC----CccCCCC
Confidence 9999999999999874 44443 455554 699999999999999999973 457 7889999
Q ss_pred cccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCcccccC
Q 006707 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 373 (634)
Q Consensus 294 ~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p~~~~ 373 (634)
++|+ |++++|+++||++||||++|+||++|+++|+ |..+ ++++++++|||++++.+++++..++
T Consensus 210 ~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~--------------~g~~~~~~GTs~~~~~~~~~~~~~~ 273 (481)
T TIGR01312 210 KAGT-VRPEVAARLGLSAGVPVAAGGGDNAAGAIGT-GTVD--------------PGDAMMSLGTSGVVYAVTDKPLPDP 273 (481)
T ss_pred eeee-EcHHHHHHhCCCCCCeEEecchHHHHHhhCC-Cccc--------------CCcEEEEecCceEEEEecCCcccCc
Confidence 9998 9999999999999999999999999999998 5443 4799999999999988888776655
Q ss_pred cccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCccCCCCcEE
Q 006707 374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453 (634)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 453 (634)
........+..|+.|+.++++.++|.+++|+++.+.. ..|+.|++++++ +|+++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~-------------~~~~~l~~~~~~---------~~~~~~~~~ 331 (481)
T TIGR01312 274 AGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK-------------EDVEALNELAEQ---------SPPGAEGVT 331 (481)
T ss_pred ccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC-------------CcHHHHHHHHhc---------CCCCCCCeE
Confidence 3221223345678899999999999999999987631 235778888776 346889999
Q ss_pred EecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEecCCCCCHHHHH
Q 006707 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ 532 (634)
Q Consensus 454 flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g~~~~~I~~~GG~a~s~~~~Q 532 (634)
|+|||.|+|+|+||++++|+|+|++.+|++.| ++||++||++|.+|++++.|++. +.++++|+++||++||++|+|
T Consensus 332 ~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~---l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q 408 (481)
T TIGR01312 332 FLPYLNGERTPHLDPQARGSFIGLTHNTTRAD---LTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQ 408 (481)
T ss_pred EecccccCCCCCCCCCcceEEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHH
Confidence 99999999999999999999999999999888 56799999999999999999875 578899999999999999999
Q ss_pred HHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeechhhHHhhhHHh
Q 006707 533 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVGFYLLTYLYLV 597 (634)
Q Consensus 533 i~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~~~~~~y~~~~ 597 (634)
|+||+||+||++++.+|++++|||++|++++|.|++++++.+.+.+..++|+|.+...+.|..++
T Consensus 409 ~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~~~~~~~~~P~~~~~~~y~~~~ 473 (481)
T TIGR01312 409 MLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELY 473 (481)
T ss_pred HHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhccCCCceECCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888754
No 14
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=4.5e-80 Score=654.54 Aligned_cols=500 Identities=45% Similarity=0.790 Sum_probs=444.7
Q ss_pred CcEEEEEecCCcccEEEEEcC-CCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 54 RSVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~-~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
++|+||||+||.|.|+.+||. +|++++.+.+||+.+. .++..||++.++|++++.+++++++++++++.+|++|||++
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa 81 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA 81 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence 469999999999999999995 5999999999999887 77889999999999999999999999999999999999999
Q ss_pred CceeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCChhHHHHhCCCCCCCChHHHHHHHHHhchhhHHhhc
Q 006707 132 TCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (634)
Q Consensus 132 ~~~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~ 211 (634)
++|+|++|++|+|+.-........++|+|+|+|+.+++++++...++++...|...++.+-.|||+|+++|.|++|+++.
T Consensus 82 TcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~ 161 (544)
T COG1069 82 TCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAA 161 (544)
T ss_pred eeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhh
Confidence 99999999999999766555445579999999999999999999888999999999999999999999999999999999
Q ss_pred eeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccccC
Q 006707 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (634)
Q Consensus 212 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~ 291 (634)
+|+.+.|||.|+|||+...|.++.+|+|+|. -.+.+-|++++++.+|++.+.. .-.+|+.++++.
T Consensus 162 ~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~~~--------------~~~~~~~~~~~f~~ig~~~l~~-~~~~l~~~i~~~ 226 (544)
T COG1069 162 HIFDLADWLTWKLTGSIARSRCTAGCKWNWL--------------EHEGGLWSADFFDKIGLDDLRE-LDSKLPEDIVPA 226 (544)
T ss_pred hhhhHHHHHHHHhhcchhhccccceeeeeee--------------ccccCCCCHHHHHhcCchhhhc-ccccCCcccccC
Confidence 9999999999999999999999999999764 2256779999999999876433 215577799999
Q ss_pred CCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCcccc
Q 006707 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF 371 (634)
Q Consensus 292 g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p~~ 371 (634)
|+++|. +++++|+++||+++|.|.+|..|..++.+|+++.. ++.++...|||.|++..++++..
T Consensus 227 g~~vg~-Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~---------------~~~l~~I~GTStC~m~~s~~~~~ 290 (544)
T COG1069 227 GEPVGG-LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ---------------PGSLAMIAGTSTCHMLLSEKPRF 290 (544)
T ss_pred Cccccc-cCHHHHHHhCCCCCcEEeccceeccccccccccCC---------------CCeEEEEeccceEEEEecCCcee
Confidence 999997 99999999999999999999999999999985433 47899999999999999999999
Q ss_pred cCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhh-cCCCCccCCCC
Q 006707 372 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE-RNSPFVAALTE 450 (634)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~-~~~p~~~~g~~ 450 (634)
.+|+|+++.....||.|++|++++.+|..++||.+.+....+........+.+.|+.+++.++.+... .+ .+++.+
T Consensus 291 v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~l~~ 367 (544)
T COG1069 291 VPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAA---IPPLAS 367 (544)
T ss_pred cCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhc---cCcccC
Confidence 99999999999999999999999999999999998753221111001111234455555555444322 22 347999
Q ss_pred cEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHH
Q 006707 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLF 530 (634)
Q Consensus 451 gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~ 530 (634)
+++++|+|+|+|+|+-||+++|+|+|++++|+.++++.+|||.+|+++|..|+++|.|++.|+++++|+++||..||++|
T Consensus 368 ~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~ll 447 (544)
T COG1069 368 GLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLL 447 (544)
T ss_pred CcEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeech
Q 006707 531 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTVG 587 (634)
Q Consensus 531 ~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~~ 587 (634)
||+.|||+|+||+++..+++.++|+|++|+++.|.|+|+.+|.++|.+..+...|.+
T Consensus 448 mql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~~~~~~~~~ 504 (544)
T COG1069 448 MQLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLPPP 504 (544)
T ss_pred HHHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcccceecCCh
Confidence 999999999999999999999999999999999999999999999988877777754
No 15
>PLN02669 xylulokinase
Probab=100.00 E-value=1.5e-79 Score=689.09 Aligned_cols=494 Identities=17% Similarity=0.132 Sum_probs=410.4
Q ss_pred CcEEEEEecCCcccEEEEEcCCCcEEEEEEeeecc----ccCCCccccCHH----------HHHHHHHHHHHHHHHHcCC
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WKEGDCIEQSST----------DIWHAICAAVDSACSLANV 119 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~----~~~~g~~eqdp~----------~~~~a~~~~l~~~l~~~~~ 119 (634)
.+|+||||+|||++|++|||++|+++++++++|+. +..+|++||||+ +||++++.+++++. +.++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~ 85 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKF 85 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCC
Confidence 36899999999999999999999999999999863 336678899988 78899999999987 4567
Q ss_pred CCCCeEEEEecCC-ceeEEEcC-CCCceee----------ccCCCCCcceeEecccchHHHHHHHhcCC---hhHHHHhC
Q 006707 120 DGEEVKGVGFAAT-CSLVAVDA-DGSPVSV----------SWNGDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCG 184 (634)
Q Consensus 120 ~~~~I~aIgis~~-~~~V~~d~-~G~pl~~----------~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG 184 (634)
+.++|++|++|+| ||+|+||+ .|+|+.. .-++|+++++|+|+|+|+.++++++++.. ++++++||
T Consensus 86 ~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG 165 (556)
T PLN02669 86 PFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTG 165 (556)
T ss_pred ChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHC
Confidence 7789999999998 99999999 5887621 11134557999999999999999999864 47899999
Q ss_pred CCCCCCChHHHHHHHHHhchhhHHhhceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCC
Q 006707 185 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWD 264 (634)
Q Consensus 185 ~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws 264 (634)
+++++.|+++||+|+++|+||+|+++.+|+.++|||+|+|||+...+|.|+++ +|+ ++|+++++||
T Consensus 166 ~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sdas--------g~~------l~Di~~~~Ws 231 (556)
T PLN02669 166 SRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETDGA--------GMN------LMDIEKRCWS 231 (556)
T ss_pred CcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchhhh--------hhh------hhccccCCcC
Confidence 99999999999999999999999999999999999999999997556777543 344 4699999999
Q ss_pred HHHHHHcCCCCcccccccccCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhh
Q 006707 265 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENE 344 (634)
Q Consensus 265 ~~~L~~~gi~~~l~~~lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~ 344 (634)
+++|+.+++.- .++|| +++++++++|+ |++++|+++||++||||++|+||++|+++|+ ++.+
T Consensus 232 ~~ll~~~~~~l--~~~Lp----~~~~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~-g~~~---------- 293 (556)
T PLN02669 232 KAALEATAPGL--EEKLG----KLAPAHAVAGK-IHPYFVQRFGFSSNCLVVQWSGDNPNSLAGL-TLST---------- 293 (556)
T ss_pred HHHHHhhCccH--HHHCc----CCCCCCcceee-eCHHHHHHhCCCCCCEEEEecchHHHHHhcc-CCCC----------
Confidence 99999996431 12346 68889999998 9999999999999999999999999999998 6654
Q ss_pred hhhccceEEEEecccceeeeeeCcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCC
Q 006707 345 EEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVS 424 (634)
Q Consensus 345 ~g~~~g~~~is~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~ 424 (634)
+|++.+++|||++++++++++..++... .++++..++.|+.++++.+||.+++|+++.+. .+
T Consensus 294 ----~g~~~~slGTs~~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~-------------~~ 355 (556)
T PLN02669 294 ----PGDLAISLGTSDTVFGITREPQPSLEGH-VFPNPVDPESYMVMLCYKNGSLTREDIRNRCA-------------DG 355 (556)
T ss_pred ----CCeEEEEEcccceEEEecCCCCCCCCcc-eeeCccCCCCeEEEEEecchHHHHHHHHHHhc-------------cC
Confidence 3799999999999998888776665221 24444558899999999999999999998863 13
Q ss_pred HHHHHHHHHHhhhhhcCCCCccCCCCcEEEecCCCCCCCCC----CCCCcceeeeCCCCC---------CCHHHHHHHHH
Q 006707 425 LFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI----ADPKSKGIICGMTLD---------SSEKQLALLYL 491 (634)
Q Consensus 425 ~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~----~d~~arg~~~Gl~~~---------~~~~~~~~~~r 491 (634)
.|+.|++++++ +|+|++|++++||+.||+.|+ +++.++|.|+|++.. |++.| ++|
T Consensus 356 ~~~~~~~~~~~---------~~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~---~~R 423 (556)
T PLN02669 356 SWDVFNKLLEQ---------TPPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPS---EVR 423 (556)
T ss_pred cHHHHHHHHHh---------CCCCCCCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHH---HHH
Confidence 57888888876 347889999899999999996 567788999999988 57777 677
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCC-----
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRY----- 566 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~----- 566 (634)
|++||++|++|.+++.|+. +.++++|+++||+++|+.|+||+|||||+||++++..|++++|||++|+++.-..
T Consensus 424 AvlEg~a~~~r~~~~~l~~-~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~~~~~~~~~~ 502 (556)
T PLN02669 424 AIIEGQFLSMRAHAERFGM-PVPPKRIIATGGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAAHGWLCNEQGSF 502 (556)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHHHHHhhhhhccc
Confidence 9999999999999999963 5678999999999999999999999999999999999999999999999965432
Q ss_pred CCHHHHHHHhhh-----cCcEEeech-hhHHhhhHHhccccchhhhhhhhHHhhh
Q 006707 567 SSLIEAMKAMNA-----AGQVCMTVG-FYLLTYLYLVYITRDKEAKICQLILCFF 615 (634)
Q Consensus 567 ~~~~e~~~~~~~-----~~~~~~P~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 615 (634)
..+++..+.... .+..++|.+ +..++|.. + .+|+++||+.|+..+
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--~--~~~~~~~~~~~~~~~ 553 (556)
T PLN02669 503 VPISCLYEGKLEATSLSCKLAVKAGDQELLSQYGL--L--MKKRMEIEQQLVEKL 553 (556)
T ss_pred CChhhhcccccccCcccceeeccCCCccHHHHHHH--H--HHHHHHHHHHHHHhc
Confidence 122222221111 112236655 67788988 5 679999999999765
No 16
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=4.9e-79 Score=675.28 Aligned_cols=453 Identities=21% Similarity=0.284 Sum_probs=388.6
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeec--c-ccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQ--I-WKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~--~-~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
++||||+|||++|+++||.+|+++++.+.+++ . .+.+|+.||||++||+++++++++++++ ..+.+|.+|++|+|
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~~ 79 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTTF 79 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEecc
Confidence 78999999999999999999999999998876 3 3488999999999999999999999865 34567999999998
Q ss_pred -ceeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHHh
Q 006707 133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (634)
Q Consensus 133 -~~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (634)
+++|+||++|+|+ +|+|+|+|+|+.++++++.+.. ++++++||.++.+.++++||+|+++|+||+|++
T Consensus 80 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~ 150 (465)
T TIGR02628 80 GVDGAPFDKQGNQL---------YPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFER 150 (465)
T ss_pred ccceEEECCCCCCc---------cccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHH
Confidence 9999999999999 8999999999999999998764 578999999999999999999999999999999
Q ss_pred hceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccc
Q 006707 210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289 (634)
Q Consensus 210 ~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~ 289 (634)
+.+|++++|||.|+|||+.. ++.+. ||+|+ +||+++++||+++|+.+||++.+ || +++
T Consensus 151 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~------l~d~~~~~w~~ell~~~gi~~~~---lP----~l~ 208 (465)
T TIGR02628 151 MHKFVFISSMITHRLTGEFT-TDITM--------AGTSM------MTDLTQRNWSPQILQALGLSRRL---FP----PLV 208 (465)
T ss_pred HHHhhCcHHHHHHHHhCCcc-cchhh--------hhcce------eeecCcCCCCHHHHHHcCCCHHH---CC----Ccc
Confidence 99999999999999999975 44443 34454 46999999999999999999743 46 788
Q ss_pred cCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCcc
Q 006707 290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 369 (634)
Q Consensus 290 ~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p 369 (634)
++++++|+ |++++|+++||++||||++|++|++|+++|+ ++. ++++++++|||+++...+++|
T Consensus 209 ~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~---------------~g~~~~~~GTs~~~~~~~~~~ 271 (465)
T TIGR02628 209 EAGEQIGT-LQNSAAAMLGLPVGVPVISAGHDTQFALFGS-GAE---------------QNQPVLSSGTWEILMARSQQV 271 (465)
T ss_pred cCCcccee-eCHHHHHHhCCCCCCCEEecCccHHHHHhcc-CCC---------------CCcEEEeccchhhheeccCcC
Confidence 99999998 9999999999999999999999999999998 543 367999999999888888777
Q ss_pred cccCcc-cccccc--cccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCcc
Q 006707 370 LFIPGV-WGPFWS--AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (634)
Q Consensus 370 ~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (634)
..++.. +..+.+ +..++.|....+..++| +++||++.+...+ . .+.+.|++|++.+++ +|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~-~------~~~~~~~~l~~~a~~---------~~ 334 (465)
T TIGR02628 272 DTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAE-T------PSDHYYQMMIEEARL---------IA 334 (465)
T ss_pred CCCccccccccccccccCCceeeehhhhhhhh-HHHHHHHHhcchh-h------ccccHHHHHHHHHHh---------CC
Confidence 655422 111111 13356776655555555 8999998764210 0 112357888888876 34
Q ss_pred CCCCcEE-EecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEecCC
Q 006707 447 ALTEDIH-VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 524 (634)
Q Consensus 447 ~g~~gl~-flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g~~~~~I~~~GG~ 524 (634)
+|++|++ |+|++. +.+||+|+|++.+|++.| ++||++||++|.+|++++.|++. +.++++|+++||+
T Consensus 335 ~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~---l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGg 403 (465)
T TIGR02628 335 NGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGH---IYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGG 403 (465)
T ss_pred CCCCcceeecccCC--------cccceeEECCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc
Confidence 7889998 888763 467899999999999988 66799999999999999999886 4578999999999
Q ss_pred CCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhhcCcEEeec
Q 006707 525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVCMTV 586 (634)
Q Consensus 525 a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~~~~~~~P~ 586 (634)
++|++|+||+|||||+||++++..|++++|||++|++++|.|+|++|+.+.+++..++|+|+
T Consensus 404 a~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~~~~~~~~P~ 465 (465)
T TIGR02628 404 SKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQYRYFYPQ 465 (465)
T ss_pred cCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhhccceeeCCC
Confidence 99999999999999999999999999999999999999999999999988998888899985
No 17
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-78 Score=675.55 Aligned_cols=487 Identities=28% Similarity=0.411 Sum_probs=416.3
Q ss_pred CCCcEEEEEecCCcccEEEEEcCC-CcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 006707 52 RSRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (634)
Q Consensus 52 m~~~~~LGIDiGTtsiKavl~d~~-g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgi 129 (634)
|+++|+||||+|||++|++++|.+ |++++..+.+++..+ .+||.||||++||+++++++++++++..++..+|.+|||
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i 80 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI 80 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence 445799999999999999999998 899999999998874 999999999999999999999999998788899999999
Q ss_pred cCC-ceeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhh
Q 006707 130 AAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (634)
Q Consensus 130 s~~-~~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~ 206 (634)
|+| |++|++|++|+|+ +|+|+|+|.|+.++++++.+.. ++.+..||+++.+.++++||+|+++|+||+
T Consensus 81 s~~~~g~vllD~~g~~L---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~ 151 (502)
T COG1070 81 SGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDL 151 (502)
T ss_pred eccccceEEECCCCCCc---------cccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHH
Confidence 998 9999999999999 8999999999999999999976 467778999999999999999999999999
Q ss_pred HHhhceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCc
Q 006707 207 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGR 286 (634)
Q Consensus 207 ~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~ 286 (634)
|+|+.+|++++|||.|+|||+.+ ++.|++ ++|+ ++|++++.|+.++|+.+|+++ . ++||
T Consensus 152 ~~k~~~il~~~dyl~~rLTG~~~-~e~s~a--------s~t~------l~d~~~~~w~~~~l~~~gl~~-~-~~lp---- 210 (502)
T COG1070 152 FAKAAKILLIKDYLRYRLTGEFA-TEISDA--------SGTG------LLDIRTRKWDWELLAALGLPE-R-DLLP---- 210 (502)
T ss_pred HHhhhheechHHHHHHHHhCCcc-cccccc--------cccc------cccccccccCHHHHHHcCCCh-H-HhCC----
Confidence 99999999999999999999975 455543 3444 469999999999999999995 1 2457
Q ss_pred ccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeee
Q 006707 287 SVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVS 366 (634)
Q Consensus 287 ~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~ 366 (634)
+++++++++|+ |++++|+++||++++||++|+||++++++|+ ++.++ +++..++||+..+....
T Consensus 211 ~vv~~g~~~G~-l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~-g~~~~--------------g~~~~~~gts~~~~~~~ 274 (502)
T COG1070 211 PVVEPGEVLGT-LTPEAAEELGLPAGTPVVVGGGDNAAAALGA-GAVDP--------------GDVSSSTGTSGVVRAAT 274 (502)
T ss_pred CccCccceecc-ccHHHHHHhCCCCCCeEEECCchHHHHhccC-CCcCC--------------CcEEEEeccccEEeeec
Confidence 78999999998 9999999999999999999999999999998 77753 67999999999988888
Q ss_pred CcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCcc
Q 006707 367 RNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (634)
Q Consensus 367 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (634)
++|..++......+++..++.|..++..+++|.+++|+++.+... ..+.++.......+ .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~------------~~~~~~~~~~~~~~-------~~ 335 (502)
T COG1070 275 DKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLA------------ESYPELLEEALAVP-------AP 335 (502)
T ss_pred cccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhccc------------cCcHHHHHHHHhcc-------CC
Confidence 886655533222334456788888999999999999999987531 12222222222211 34
Q ss_pred CCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEecCCC
Q 006707 447 ALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLA 525 (634)
Q Consensus 447 ~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g~~~~~I~~~GG~a 525 (634)
+++.++.|.|||+|||.|++++++|+.|+|++..|++.| ++||++||++|.++..++.|++. +.++++|+++||+|
T Consensus 336 ~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~---l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGga 412 (502)
T COG1070 336 AGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAH---LARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGA 412 (502)
T ss_pred CCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcc
Confidence 688999999999999999999999999999999999988 56799999999999999999987 77889999999999
Q ss_pred CCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCC-CCHHHHHHHhhhcCcEEeechhhHHhhhHHhccccchh
Q 006707 526 KNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRY-SSLIEAMKAMNAAGQVCMTVGFYLLTYLYLVYITRDKE 604 (634)
Q Consensus 526 ~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~-~~~~e~~~~~~~~~~~~~P~~~~~~~y~~~~~~~~~~~ 604 (634)
||++|+||+||++|+||.++...|++++|+|++++.+++.+ ++.+++.+.+.. .+++.|.+...+.|..++..+...|
T Consensus 413 rs~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~y~~~~~~~~~~y 491 (502)
T COG1070 413 RSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVD-ARRIIPDPERAAAYQELYERYRALY 491 (502)
T ss_pred cCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcccc-ccccCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888887655 455555555555 8999998887777887554444444
Q ss_pred hhh
Q 006707 605 AKI 607 (634)
Q Consensus 605 ~~~ 607 (634)
.+.
T Consensus 492 ~~~ 494 (502)
T COG1070 492 QAL 494 (502)
T ss_pred HHH
Confidence 443
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1.1e-68 Score=591.36 Aligned_cols=429 Identities=16% Similarity=0.157 Sum_probs=350.2
Q ss_pred EEEecCCcccEEEEEcCC---CcEE-EEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 58 LGVDVGTGSARAGLFDES---GKLL-GSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~---g~vl-~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
||||+|||++|++++|.+ |+++ .+...+++... .+++.||||+.||+++.++++++.+. ..+|.+||||+|
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~Igis~q 76 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDSIGIDTW 76 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceEEEEecc
Confidence 589999999999999977 5666 56666665544 88999999999999999999988763 346999999998
Q ss_pred -ceeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHHh
Q 006707 133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (634)
Q Consensus 133 -~~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~ 209 (634)
+++|+||++|+|+ +|+|+|+|+|+.++++++.+.. ++++++||+++.+.++++||+|+++|+||+|++
T Consensus 77 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~ 147 (454)
T TIGR02627 77 GVDFVLLDQNGQRV---------GDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEK 147 (454)
T ss_pred ceeEEEEcCCCCCc---------cCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHH
Confidence 9999999999999 8999999999999999998775 678999999999999999999999999999999
Q ss_pred hceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccc
Q 006707 210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289 (634)
Q Consensus 210 ~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~ 289 (634)
+++|++++|||.|+|||+.. ++.|. ||+|+ +||+++++||+++++.+||++. +|| +++
T Consensus 148 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------As~t~------l~d~~~~~W~~~ll~~~gi~~~---~lP----~l~ 205 (454)
T TIGR02627 148 VAHFLLIPDYLNYRLTGKKV-WEYTN--------ATTTQ------LVNINTDDWDEDLLAYLGVPAA---WFG----RPT 205 (454)
T ss_pred HHHhCCHHHHHHHheeCCce-eeeeh--------hhhcc------cccCCCCCcCHHHHHHcCCCHH---HcC----Ccc
Confidence 99999999999999999875 45543 45555 3699999999999999999973 346 788
Q ss_pred cCCCcccCCCCHHHHHHcCCCCCCcEEE-ccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCc
Q 006707 290 FPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 368 (634)
Q Consensus 290 ~~g~~iG~~i~~~~a~~~GL~~g~pV~~-g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~ 368 (634)
++++++|. +.+ .|+ +++||++ |+||++|+++|+ |..+ ++++.+++|||..+...+++
T Consensus 206 ~~~~~~G~-~~~-----~gl-~g~pVv~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GTs~~~~~~~~~ 263 (454)
T TIGR02627 206 HPGNVIGL-WEC-----PQG-NQIPVVAVATHDTASAVVAA-PLQG--------------ENAAYLSSGTWSLMGFESQT 263 (454)
T ss_pred CCCCeeEE-eec-----ccC-CCCCEEEECCchHHHHHhcC-CCCC--------------CCcEEEEEcHHHHhcccCCC
Confidence 99999997 753 477 8999998 889999999998 5554 37899999999988777777
Q ss_pred ccccCcccc-ccc-ccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCcc
Q 006707 369 KLFIPGVWG-PFW-SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (634)
Q Consensus 369 p~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (634)
|..++..+. .+. ....++.|....+.. ++ |+++.+... .+.+.|+.+++.+.. +|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~~~~~~---------~~~~~~~~l~~~a~~---------~p 320 (454)
T TIGR02627 264 PITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQRVCRE---------RDINDLPALIEQAQA---------LP 320 (454)
T ss_pred CCCCHHHHHhccccccccccEEEeecchh-hh----HHHHHHHhh---------hccccHHHHHHHhcC---------CC
Confidence 665542211 111 123356676655444 33 777765321 012345666655543 22
Q ss_pred CCCCcEEEecCCCCCCCCCCCCC-ccee------eeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEE
Q 006707 447 ALTEDIHVLPDFHGNRSPIADPK-SKGI------ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL 518 (634)
Q Consensus 447 ~g~~gl~flP~l~Ger~P~~d~~-arg~------~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g~~~~~I 518 (634)
++ .|++.|++.|+||++ +++. |+|++..|++.| ++||++||++|.+|++++.|++. +.++++|
T Consensus 321 ~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~---l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i 391 (454)
T TIGR02627 321 AF------KSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAE---LARCIFDSLALLYRQVLLELAELRGKPISQL 391 (454)
T ss_pred CC------CeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCcCEE
Confidence 32 355678899999995 5444 599999999999 56799999999999999999874 6788999
Q ss_pred EEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHh
Q 006707 519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM 576 (634)
Q Consensus 519 ~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~ 576 (634)
+++||+++|++|+||+||++|+||.+.. .|++++|||++|++++|.|++++|+.+.+
T Consensus 392 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~~~ 448 (454)
T TIGR02627 392 HIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQIV 448 (454)
T ss_pred EEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 9999999999999999999999998765 77999999999999999999998884433
No 19
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=7.4e-66 Score=569.69 Aligned_cols=439 Identities=15% Similarity=0.134 Sum_probs=357.1
Q ss_pred EEEcCCCc-EEEEEEeeecccc--CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-ceeEEEcCCCCce
Q 006707 70 GLFDESGK-LLGSASSPIQIWK--EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPV 145 (634)
Q Consensus 70 vl~d~~g~-vl~~~~~~~~~~~--~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~~~V~~d~~G~pl 145 (634)
.-+|.+|+ +.-+..++++..+ .+++.++||+.||+++.++++++... ..+|.+||||+| +++|+||++|+|+
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~----~~~I~~Igis~q~~~~v~lD~~G~pL 78 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCEE----GIRIDSIGIDTWGVDYVLLDKQGQRV 78 (471)
T ss_pred eEEcCCCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhhc----CCCccEEEEcCCcccEEEECCCCCCc
Confidence 34565544 3344455565533 88999999999999999999887652 467999999998 9999999999999
Q ss_pred eeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHHhhceeecchhHHHhh
Q 006707 146 SVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 223 (634)
Q Consensus 146 ~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~dyl~~~ 223 (634)
+|+|+|+|.|+.++++++.+.. ++++++||+++.+.++++||+|+++|+||+|+++.+|++++|||.|+
T Consensus 79 ---------~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~ 149 (471)
T PRK10640 79 ---------GLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYR 149 (471)
T ss_pred ---------CCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHH
Confidence 8999999999999999998875 67899999999999999999999999999999999999999999999
Q ss_pred hhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccccCCCcccCCCCHHH
Q 006707 224 ATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAA 303 (634)
Q Consensus 224 LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~g~~iG~~i~~~~ 303 (634)
|||+.. ++.|. ||+|+ +||+++++||+++|+.+||+.. +|| +++++++++|. ++++
T Consensus 150 LTG~~~-~d~s~--------as~t~------l~d~~~~~W~~ell~~~Gi~~~---~LP----~lv~~~~~~G~-v~~~- 205 (471)
T PRK10640 150 LTGKMN-WEYTN--------ATTTQ------LVNINSDDWDESLLAWSGAPKA---WFG----RPTHPGNVIGH-WICP- 205 (471)
T ss_pred HhCCcc-eeecH--------hhhcc------ccCCCcCCcCHHHHHHcCCCHH---HcC----CCcCCCcccee-eecc-
Confidence 999975 45553 44555 4699999999999999999973 346 68899999997 8765
Q ss_pred HHHcCCCCCCcEEE-ccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccceeeeeeCcccccCcc-cccccc
Q 006707 304 AKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV-WGPFWS 381 (634)
Q Consensus 304 a~~~GL~~g~pV~~-g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p~~~~~~-~~~~~~ 381 (634)
+| .++||++ |+||++|+++|+ |..+ ++++++++|||.++..++++|..++.. ...+.+
T Consensus 206 ---~g--~g~pVv~~g~~D~~aa~~g~-g~~~--------------~g~~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~ 265 (471)
T PRK10640 206 ---QG--NEIPVVAVASHDTASAVIAS-PLND--------------SDAAYLSSGTWSLMGFESQTPFTNDTALAANITN 265 (471)
T ss_pred ---cC--CCCCEEEeCCCcHHHHhhcc-CCCC--------------CCeEEEEeccHhhhheecCCCcCCHHHHHhccCc
Confidence 35 6899998 689999999998 5553 478999999999988888877665421 111111
Q ss_pred -cccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHHhhhhhcCCCCccCCCCcEEEecCCCC
Q 006707 382 -AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 460 (634)
Q Consensus 382 -~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G 460 (634)
...++.|..+..+. | +|+++++... .+...|+++.+++++ + ++++|++ +| .|
T Consensus 266 ~~~~~g~~~~~~~~~--g---~W~~~~~~~~---------~~~~~~~~l~~~a~~---------~-~g~~gli-~p--~g 318 (471)
T PRK10640 266 EGGAEGRYRVLKNIM--G---LWLLQRVLQE---------RQITDLPALIAATAA---------L-PACRFLI-NP--ND 318 (471)
T ss_pred cCCCCceEEEecchh--H---HHHHHHHHHH---------hccCCHHHHHHHHHh---------C-CCCCcee-CC--Cc
Confidence 23466776655333 3 8999987431 112346677666554 2 3778886 58 69
Q ss_pred CCCCCCCC-CcceeeeCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCccEEEEecCCCCCHHHHH
Q 006707 461 NRSPIADP-KSKGIICGMTLDS------SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ 532 (634)
Q Consensus 461 er~P~~d~-~arg~~~Gl~~~~------~~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g~~~~~I~~~GG~a~s~~~~Q 532 (634)
+|. ||+ ++||.|+|++.+| ++.| ++||++||++|.+|++++.|++. +.++++|+++||+++|++|+|
T Consensus 319 er~--~~~~~arg~~~gl~~~~G~~~~~~~~~---l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Q 393 (471)
T PRK10640 319 DRF--INPPSMCSEIQAACRETAQPVPESDAE---LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQ 393 (471)
T ss_pred ccc--cCchhhHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHH
Confidence 994 675 8999997777665 8888 56799999999999999999874 667899999999999999999
Q ss_pred HHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCCCHHHHHHHhhh---cCcEEeechh--hHHhhhHHhcc
Q 006707 533 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA---AGQVCMTVGF--YLLTYLYLVYI 599 (634)
Q Consensus 533 i~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~~~~e~~~~~~~---~~~~~~P~~~--~~~~y~~~~~~ 599 (634)
|+|||+|+||.+.+. |++++|||++|++++|.|++++|+ ++++. ..++|+|.+. |+..|..+..+
T Consensus 394 i~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 463 (471)
T PRK10640 394 LCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTPNPDSEIARHVAQFQSL 463 (471)
T ss_pred HHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcCCChHHHHHHHHHHHHH
Confidence 999999999988764 899999999999999999999977 67766 5799999664 99999886664
No 20
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-64 Score=514.71 Aligned_cols=492 Identities=17% Similarity=0.151 Sum_probs=398.5
Q ss_pred CCCCcEEEEEecCCcccEEEEEcCCCcEEEEEEeee----cccc-CCC-------ccccCHH-HHHHHHHHHHHHHHHHc
Q 006707 51 ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI----QIWK-EGD-------CIEQSST-DIWHAICAAVDSACSLA 117 (634)
Q Consensus 51 ~m~~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~----~~~~-~~g-------~~eqdp~-~~~~a~~~~l~~~l~~~ 117 (634)
++....+||+|++|+.+|++++|++++|++++.+.| |.|. ..| ..-..|. ||++|+.-++ +.++++
T Consensus 5 ~~~~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll-~kl~~~ 83 (545)
T KOG2531|consen 5 KQPDRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLL-DKLREA 83 (545)
T ss_pred cCCCceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHH-HHHHHc
Confidence 344457999999999999999999999999999887 3342 222 2223455 9999987777 556667
Q ss_pred CCCCCCeEEEEecCC-ceeEEEcCCCCceeeccC-----------CCCCcceeEecccchHHHHHHHhcCC---hhHHHH
Q 006707 118 NVDGEEVKGVGFAAT-CSLVAVDADGSPVSVSWN-----------GDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQY 182 (634)
Q Consensus 118 ~~~~~~I~aIgis~~-~~~V~~d~~G~pl~~~~~-----------~~~~~~~i~W~D~Ra~~~~~~l~~~~---~~~~~~ 182 (634)
+.+.++|.||+.++| ||.|+|.+.++-.++.++ +|.......|||+.+.+||++|+..+ +++.++
T Consensus 84 ~~d~~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~L 163 (545)
T KOG2531|consen 84 GFDLSKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKL 163 (545)
T ss_pred CCCHHHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHh
Confidence 888999999999997 999999999888877777 58888999999999999999999986 789999
Q ss_pred hCCCCCCCChHHHHHHHHHhchhhHHhhceeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCC
Q 006707 183 CGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACG 262 (634)
Q Consensus 183 tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~ 262 (634)
||++.+.+|++|||+.+.+.+||+|++|.||..+++|++..|.|..+..|.|++|+ || ++||+++.
T Consensus 164 TGSRAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsG-----------MN---L~dIr~k~ 229 (545)
T KOG2531|consen 164 TGSRAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGSG-----------MN---LLDIRKKK 229 (545)
T ss_pred hcchhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceecccccC-----------ch---HHHHhhhh
Confidence 99999999999999999999999999999999999999999999999888888765 44 57999999
Q ss_pred CCHHHHHHcCCCCcccccccccCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhch
Q 006707 263 WDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKE 342 (634)
Q Consensus 263 Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~ 342 (634)
||.++|+++. |. |. .+|+ .++++..++|+ |++++.+++|++++|.|++-+||+++++.|+ -+.
T Consensus 230 ws~~~L~~~a-pd-L~---~KL~-~pv~~~~~~G~-I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL-~l~--------- 292 (545)
T KOG2531|consen 230 WSKALLDACA-PD-LE---EKLG-KPVPPMSIAGT-ISKYFVKRYGFPPDCKVVPSTGDNPSSLAGL-PLR--------- 292 (545)
T ss_pred hhHHHHhhhC-hh-HH---HHhC-CCCCccccccc-hhhhhHhhcCCCCCCEEEecCCCChHHhhCc-ccc---------
Confidence 9999999996 33 44 4555 67888999998 9999999999999999999999999999998 444
Q ss_pred hhhhhccceEEEEecccceeeeeeCcccccC-cccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhc
Q 006707 343 NEEEAICHRMVLVCGTSTCHMAVSRNKLFIP-GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASR 421 (634)
Q Consensus 343 ~~~g~~~g~~~is~GTs~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~ 421 (634)
++++.+|+|||++++++++++.+.+ ++ .|++++.+++|+.+.|+.||+..-+-+|+..
T Consensus 293 ------~~dl~iSLGTSdTv~m~t~~~~p~~egH--vf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~------------- 351 (545)
T KOG2531|consen 293 ------PGDLLISLGTSDTVFMVTKEYHPSPEGH--VFCHPTDPNHYMGMLCFKNGSLTRERIRNES------------- 351 (545)
T ss_pred ------CCceEEEecCcceEEEEcCCCCCCCCcc--eeccCCCccceEEEEEecCChHHHHHHhhcc-------------
Confidence 3799999999999999999988766 55 4788888999999999999977666555532
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCccCCCCcEEEecCCCCCCCC-------CCCCCcceee---eCCCCCCCHHHHHHHHH
Q 006707 422 HVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSP-------IADPKSKGII---CGMTLDSSEKQLALLYL 491 (634)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P-------~~d~~arg~~---~Gl~~~~~~~~~~~~~r 491 (634)
...+|+.|++.+.+. |+|++|.+-+-|-.+|-.| +|+-+....- .++....++++ .+|
T Consensus 352 ~~~sWd~Fne~L~~t---------~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~---e~r 419 (545)
T KOG2531|consen 352 ANGSWDKFNEILDST---------PSGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEVAKFSDPEI---EAR 419 (545)
T ss_pred cCCCHHHHHHHhccC---------cCCCCCceeEecccccccCCCCccceEEEecCCccchhhcccccCCCchH---HHH
Confidence 236899999988764 3677766222111244444 1221111110 14445555666 678
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCCCC----
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS---- 567 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~~~---- 567 (634)
|++||+++..|...+.|.....+.++|+++||+|+|..++|++|||||+||++.+..+++|+|+|+.|+++.-...
T Consensus 420 AlvEgQ~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~ 499 (545)
T KOG2531|consen 420 ALVEGQFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIF 499 (545)
T ss_pred HHHHHhHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhcccccc
Confidence 9999999999999998876556889999999999999999999999999999999999999999999999864321
Q ss_pred -CHHHHHH--Hh--hhcCcEEeechhhHHhhhHHhccccchhhhhhhhH
Q 006707 568 -SLIEAMK--AM--NAAGQVCMTVGFYLLTYLYLVYITRDKEAKICQLI 611 (634)
Q Consensus 568 -~~~e~~~--~~--~~~~~~~~P~~~~~~~y~~~~~~~~~~~~~~~~~~ 611 (634)
.+..... +. .+....++|.++..++|.+ + .+|++++|+.|
T Consensus 500 vp~~~~~~~~~~~p~~~~L~~~p~~~~~e~Y~~--l--l~~~~e~e~~l 544 (545)
T KOG2531|consen 500 VPFSNKTNYLSLTPSKLELACEPDSANWEIYGP--L--LKRLSELEDTL 544 (545)
T ss_pred ccceeeccccccCCccceeeecCCcchHHHHHH--H--HHHHHHHHHhh
Confidence 1111100 11 2367889999999999999 4 56889999876
No 21
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-63 Score=530.24 Aligned_cols=461 Identities=35% Similarity=0.524 Sum_probs=372.4
Q ss_pred CcEEEEEecCCcccEEEEEc-CCCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCC---CCeEEEE
Q 006707 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDG---EEVKGVG 128 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d-~~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~---~~I~aIg 128 (634)
.++++|||+||||+|++||| .+|+++..++.++.... .+||+||||.++|+++++||+.+.+..+... ..+.+|+
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 57999999999999999999 78999999999987654 9999999999999999999999888775443 4467799
Q ss_pred ecCC-ceeEEEcCC-CCceeeccCCCCCcceeEecccchHHHHHHHhcCCh-hH---HHHhCCCCCCCChHHHHHHHHHh
Q 006707 129 FAAT-CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNS-PV---LQYCGGAVSPEMQPPKLLWVKEN 202 (634)
Q Consensus 129 is~~-~~~V~~d~~-G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~-~~---~~~tG~~~~~~~~~~kl~wl~~~ 202 (634)
++.| ++.|+|++. |+|. .++|.|+|+|+..++++++.... .. ...+|.+++++|+++||+||++|
T Consensus 85 v~~qr~~~v~w~~~tg~p~---------~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn 155 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPL---------TNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDN 155 (516)
T ss_pred EEecCCceEEeecCCCCcc---------cceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhh
Confidence 9998 999999987 9999 89999999999999999999863 22 26899999999999999999999
Q ss_pred chhh-HHhhceeecchhHHHhhhhCCCccccc-cccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCccccc
Q 006707 203 LQES-WSMVFRWMDLSDWLSYRATGDDTRSLC-TTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGH 280 (634)
Q Consensus 203 ~Pe~-~~~~~~~~~~~dyl~~~LTG~~~~s~~-s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~ 280 (634)
.|++ .....+.+...+|+.|++++-...+.+ + ....|+|+|++ ||..++.||..+++.+|||..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~----~d~~Nas~t~~------f~~~~~~wd~~~~~f~~lp~~ll-- 223 (516)
T KOG2517|consen 156 VPEVLKAKEEGGFDLGTFDTWLATGLTGRSSCHC----TDVTNASRTGL------FNTESGLWDLKLLDFFGLPLNLL-- 223 (516)
T ss_pred CHHHHHHHHhcccchhhhhhheeecCCccceecc----ccccccccccc------cchhhhhhhhhhhhhhCCCcccC--
Confidence 9998 677777777777777776665432221 1 01236677775 57899999999999999998654
Q ss_pred ccccCcccccCCCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhccccccCcccchhchhhhhhccceEEEEecccc
Q 006707 281 HAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTST 360 (634)
Q Consensus 281 lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~g~~~~g~~~~~~~~~g~~~g~~~is~GTs~ 360 (634)
| ++..+++++|+ +. +..+|+.+|+||.++.+|++|+++|..+.. .++...++||+.
T Consensus 224 -p----~i~s~~e~~g~-~~---~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~---------------~g~~~~t~~t~~ 279 (516)
T KOG2517|consen 224 -P----DIRSSSEVYGT-TA---AGDLGLLEGTPVSSCLGDQQASMVGQMCYK---------------PGCAKLTYGTGC 279 (516)
T ss_pred -C----ccccccccccc-cc---ccccccccCcceeechhhHHHHHHhHhhhc---------------CcceEEeeCCce
Confidence 6 67778998886 43 356779999999999999999999986543 256677777777
Q ss_pred eeeeeeCccc--ccCcccc----cccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHHHHHH
Q 006707 361 CHMAVSRNKL--FIPGVWG----PFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLE 434 (634)
Q Consensus 361 ~~~~~~~~p~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~ 434 (634)
.+..+..... ..++.+. .++- ...-.|+.++....+|.+++|+++.+...++ ...+++++.
T Consensus 280 Fl~~~~G~~~~~s~~g~~~~~g~q~g~-g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~------------~~~i~~~~~ 346 (516)
T KOG2517|consen 280 FLLGVWGPYFDASQPGLLTTVGGQSGT-GKLLDHALEGHAAFAGALVQWLRDNLGIIEE------------LNEIEKLAA 346 (516)
T ss_pred EEeeccCCccccccCccceeccccccc-ccHHHHHHhcccchHHHHHHHHHHhhhHHHH------------HHHHHHHHH
Confidence 6655443211 1122221 1110 0111377888888899999999988643211 123344444
Q ss_pred hhhhhcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Q 006707 435 SMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG-H 513 (634)
Q Consensus 435 ~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g-~ 513 (634)
+. ..+.+++|.|.|.|.|+|+||+++||+|+|++.+++.+|+++ |++|+++|++|++++.|+..+ .
T Consensus 347 ~~----------~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~---A~leai~fqtr~Il~am~~~~~~ 413 (516)
T KOG2517|consen 347 EV----------NLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLAR---AALEAIAFQTREILEAMERDGGH 413 (516)
T ss_pred hh----------cccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCC
Confidence 32 267899999999999999999999999999999999999664 999999999999999998766 6
Q ss_pred CccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCC--CCCHHHHHHHhhhcCcEEeech
Q 006707 514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR--YSSLIEAMKAMNAAGQVCMTVG 587 (634)
Q Consensus 514 ~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~--~~~~~e~~~~~~~~~~~~~P~~ 587 (634)
++++++++||.++|++++|++||++|+||.+++..|++++|||++|+.+.|. |.+.+++. +....++|.|+.
T Consensus 414 ~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P~~ 487 (516)
T KOG2517|consen 414 PISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRPNI 487 (516)
T ss_pred CcceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecCCC
Confidence 9999999999999999999999999999999999999999999999999999 55666553 578899999954
No 22
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=3.6e-48 Score=394.01 Aligned_cols=241 Identities=38% Similarity=0.668 Sum_probs=215.7
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-c
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~ 133 (634)
|+||||+|||++|++++|++|++++..+++++... .+|+.||||++||+++++++++++++.+.+..+|.+|+||+| +
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~ 80 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH 80 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence 78999999999999999999999999999998766 789999999999999999999999998888899999999998 9
Q ss_pred eeEEEcCCCCceeeccCCCCCcceeEecccchHHHHHHHhcCC--hhHHHHhCCCCCCCChHHHHHHHHHhchhhHHhhc
Q 006707 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (634)
Q Consensus 134 ~~V~~d~~G~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~wl~~~~Pe~~~~~~ 211 (634)
++|+||++|+|+ +|+|+|+|+|+.++++++++.. +++++.||.++++.++++||+|+++|+||.|++++
T Consensus 81 ~~v~~D~~~~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 151 (245)
T PF00370_consen 81 GLVLLDKDGKPL---------RPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA 151 (245)
T ss_dssp EEEEEETTSSBS---------SCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH
T ss_pred Ccceeccccccc---------cccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhh
Confidence 999999999999 8999999999999999998865 68999999999999999999999999999999999
Q ss_pred eeecchhHHHhhhhCCCccccccccccccccccchhhhccccccCCCcCCCCCHHHHHHcCCCCcccccccccCcccccC
Q 006707 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (634)
Q Consensus 212 ~~~~~~dyl~~~LTG~~~~s~~s~~~~~~~~~as~t~l~~~~~~~D~~~~~Ws~~~L~~~gi~~~l~~~lp~l~~~~~~~ 291 (634)
+|++++|||.|+|||+.. ++.|. |++|+ ++|+++++|++++++.+||++. +|| +++++
T Consensus 152 ~~~~~~dyl~~~LtG~~~-~d~s~--------as~tg------l~d~~~~~w~~~~l~~~gi~~~---~lP----~i~~~ 209 (245)
T PF00370_consen 152 KFLTLSDYLAYKLTGRAA-TDYSN--------ASRTG------LYDIRTGQWDEELLEALGIPEE---LLP----EIVPP 209 (245)
T ss_dssp EEEEHHHHHHHHHHSC-E-EEHHH--------HCTSS------SEETTTTEE-HHHHHHTTSGGG---GSC----EEE-T
T ss_pred hcccHHHHHHhhcccccc-ccccc--------hhccc------cccccccccCHHHHHhhCCChh---hCC----cEecC
Confidence 999999999999999874 44443 34455 3589999999999999999984 347 78899
Q ss_pred CCcccCCCCHHHHHHcCCCCCCcEEEccchhhhhhhc
Q 006707 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG 328 (634)
Q Consensus 292 g~~iG~~i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g 328 (634)
|+++|+ +++++|+++||++|+||++|++|++|+++|
T Consensus 210 g~~~G~-~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 210 GEIIGT-LTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp TSEEEE-EEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred CCeeEE-ECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 999998 999999999999999999999999999986
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.98 E-value=5.8e-32 Score=265.82 Aligned_cols=196 Identities=34% Similarity=0.557 Sum_probs=159.7
Q ss_pred EEEEecccceeeeeeCcccccC-cccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 006707 352 MVLVCGTSTCHMAVSRNKLFIP-GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (634)
Q Consensus 352 ~~is~GTs~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~ 430 (634)
+++|+|||+++++++++|..+. +.+.++..+..++.|.++++.+++|.+++|+++.+...+.+.+ ..+.++.+.
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~-----~~~~~~~~~ 75 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSD-----EEEIYEDLA 75 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSS-----TTHHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhh-----hhhccchHH
Confidence 3689999999999999988433 5554444445678899999999999999999998632111100 001112222
Q ss_pred HHHHhhhhhcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006707 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510 (634)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~ 510 (634)
...+.. .++++.+++|+|+|+|+|+|+||++++|.|+|++.+|++.+ ++||++||++|.+|++++.|++
T Consensus 76 ~~~~~~--------~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~---~~rAv~Egia~~~~~~~~~l~~ 144 (198)
T PF02782_consen 76 ELEAAA--------SPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRAD---LARAVLEGIAFSLRQILEELEE 144 (198)
T ss_dssp HHHHHH--------TSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh--------ccCcccceeeeeccccCcccccccccccccccCCcccCHHH---HHHHHHHhHHHHHHHhhhhccc
Confidence 111111 22678999999999999999999999999999999999888 5679999999999999999988
Q ss_pred C-CCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhc
Q 006707 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 563 (634)
Q Consensus 511 ~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~ 563 (634)
. +.++++|+++||++||++|+|++||+||+||++++..|++|+|||++|++++
T Consensus 145 ~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 145 LTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp HHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred cccccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 7 8899999999999999999999999999999999999999999999999874
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.28 E-value=2.6e-10 Score=116.31 Aligned_cols=74 Identities=22% Similarity=0.389 Sum_probs=61.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-EEEEecCCCCCHHHHHHHHHhhCCceeccCCCC-hhhHH
Q 006707 477 MTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLG 554 (634)
Q Consensus 477 l~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-a~alG 554 (634)
+....++++ ++++++|++++.+...+..+ .++ +|+++||.++|+.|.|.+++.++.||.+++.++ ++|+|
T Consensus 173 l~~g~~~~d---i~~~~~~~va~~i~~~~~~~-----~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlG 244 (248)
T TIGR00241 173 LAAGVKKED---ILAGVYESIAERVAEMLQRL-----KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVG 244 (248)
T ss_pred HHCCCCHHH---HHHHHHHHHHHHHHHHHhhc-----CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHH
Confidence 344445667 55699999999999866433 244 899999999999999999999999999999885 89999
Q ss_pred HHHH
Q 006707 555 AAIL 558 (634)
Q Consensus 555 AA~l 558 (634)
||++
T Consensus 245 aAl~ 248 (248)
T TIGR00241 245 AALL 248 (248)
T ss_pred HHhC
Confidence 9974
No 25
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.54 E-value=3.8e-07 Score=96.06 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh-----CCceeccCCCC-hhhHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-----GCPIILPRENE-SVLLG 554 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl-----g~pV~~~~~~e-a~alG 554 (634)
.++++++ .++.++++-.+...+..+. ...+.|.++||.++|+.+.+.+.+.+ +.+|.+++.++ ..|+|
T Consensus 354 ~~reDIa---AGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALG 427 (432)
T TIGR02259 354 DKREDIL---AGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALG 427 (432)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHH
Confidence 3466754 4888888776665544332 22357999999999999999999999 57888887655 78999
Q ss_pred HHHHH
Q 006707 555 AAILG 559 (634)
Q Consensus 555 AA~lA 559 (634)
||+.|
T Consensus 428 AAL~a 432 (432)
T TIGR02259 428 ASEFA 432 (432)
T ss_pred HHHhC
Confidence 99875
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.88 E-value=0.004 Score=68.59 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhCC---CCccEEEEecCCCCCHHHHHHHHHhhCCceecc
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHC----NAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILP 545 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l----~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~ 545 (634)
+..+..++++-+|.++-.++..++.+ ...+ ..+..|+++||+|+=+.+.++++++|+.||.+.
T Consensus 290 ~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~ 359 (420)
T PRK09472 290 RQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG 359 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEe
Confidence 55677778898888888887777544 3333 246789999999999999999999999999873
No 27
>PRK13317 pantothenate kinase; Provisional
Probab=97.80 E-value=0.0012 Score=68.27 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCccCCCCcEEEecCCCCCCCCCCCCCcceeeeC-----CCCCCCHHHHHHHHHHHHHHH
Q 006707 423 VSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICG-----MTLDSSEKQLALLYLATVQGI 497 (634)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~~~G-----l~~~~~~~~~~~~~rAvlEgi 497 (634)
..+++++.+++.+-.. ..-+ +.+-.+.|...+....+.+.+.|| +....++++++ ++++..+
T Consensus 140 ~~~~~el~~la~~g~~---------~~~D-l~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIa---asl~~~v 206 (277)
T PRK13317 140 ISDYEQLIELAKHGDR---------NNID-LKVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDIL---AGVIGLV 206 (277)
T ss_pred CCCHHHHHHHHhcCCC---------cccc-ceeccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHH---HHHHHHH
Confidence 4567888888765110 0111 223333333222234566666665 33445677855 4999888
Q ss_pred HHHHHHHHHHHHhCCCCccEEEEec-CCCCCHHHHHHHHHhh---CCceeccCCCC-hhhHHHHHHHH
Q 006707 498 AYGTRHIVEHCNAHGHKIDTLLACG-GLAKNPLFLQQHADII---GCPIILPRENE-SVLLGAAILGA 560 (634)
Q Consensus 498 a~~~r~~~~~l~~~g~~~~~I~~~G-G~a~s~~~~Qi~Advl---g~pV~~~~~~e-a~alGAA~lA~ 560 (634)
+..+-...-.+.+. ..+++|+++| |.++|+.+++.+++.+ +..+..++.++ .+|+|||+.|.
T Consensus 207 ~~~I~~lA~~~ar~-~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 207 GEVITTLSIQAARE-KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 77776654333332 3457999999 6899999999999999 78888877554 89999999875
No 28
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.0017 Score=68.54 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=56.4
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
.+++|||+|.|++|++++|.+|+++...+.+++. ..+.+.+.+.+.+.+++++++.+ ...++.+||+++.
T Consensus 6 ~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi~~p 75 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLDGEILLRERIPTPT-------PDPEEAILEAILALVAELLKQAQ-GRVAIIGIGIPGP 75 (314)
T ss_pred cEEEEEEecCCEEEEEEECCCCcEEEEEEEecCC-------CCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEeccc
Confidence 5899999999999999999999999999888872 23335788888888988888754 3456777777653
No 29
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.14 E-value=0.0015 Score=70.09 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCC-hhhHHHHHHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG 559 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-a~alGAA~lA 559 (634)
.++++++ .++..+++-.+... .++..+ ..+.|+++||.++|+.+...+.+.+|.+|.+++.++ .+|+|||++|
T Consensus 328 ~~~eDIa---AGl~~SIa~rv~~~--l~~~~~-i~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 328 ASPEDVA---AAACHSVAEQVYEQ--QLQEID-VREPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred CCHHHHH---HHHHHHHHHHHHHH--HhhcCC-CCCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 4467754 48888888776642 122222 224599999999999999999999999999988666 7899999987
No 30
>PRK09698 D-allose kinase; Provisional
Probab=97.13 E-value=0.0044 Score=64.96 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=54.7
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCce
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~~ 134 (634)
.+++|||+|.|++|++++|.+|+++.+...+.+. ..+++. .+.+.+.+++++++.+ .++.+|||+...
T Consensus 4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-------~~~~~~-~~~l~~~i~~~~~~~~---~~i~gigia~pG- 71 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-------VIAPDL-VSGLGEMIDEYLRRFN---ARCHGIVMGFPA- 71 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-------ccchHH-HHHHHHHHHHHHHHcC---CCeeEEEEeCCc-
Confidence 6899999999999999999999999877766541 123343 6777778888887643 578899987643
Q ss_pred eEEEcCC
Q 006707 135 LVAVDAD 141 (634)
Q Consensus 135 ~V~~d~~ 141 (634)
++|.+
T Consensus 72 --~vd~~ 76 (302)
T PRK09698 72 --LVSKD 76 (302)
T ss_pred --ceeCC
Confidence 34654
No 31
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.10 E-value=0.0014 Score=67.75 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCcee-ccCC-CChhhHHHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRE-NESVLLGAAILG 559 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~-~~~~-~ea~alGAA~lA 559 (634)
++++++ +++.++++-.+... +++.+ --+.|.++||.++|+.+.+.+.+.|+.+|. .+.. .-..|+|||++|
T Consensus 214 ~~edI~---aGl~~sia~rv~~~---~~~~~-i~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A 286 (293)
T TIGR03192 214 TKNMVI---AAYCQAMAERVVSL---LERIG-VEEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFG 286 (293)
T ss_pred CHHHHH---HHHHHHHHHHHHHH---hcccC-CCCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHH
Confidence 456744 48888888665333 33333 235699999999999999999999999998 4543 448999999998
Q ss_pred Hh
Q 006707 560 AV 561 (634)
Q Consensus 560 ~~ 561 (634)
..
T Consensus 287 ~~ 288 (293)
T TIGR03192 287 YT 288 (293)
T ss_pred HH
Confidence 54
No 32
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.04 E-value=0.0035 Score=66.22 Aligned_cols=66 Identities=32% Similarity=0.516 Sum_probs=55.3
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
||||+|.|++|++++|.+|+++.+.+.+.+ .+++++.+.+.+.+++++++.+....+|.+|||+..
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD---------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEecc
Confidence 699999999999999999999887655442 367888999999999999887766678999998764
No 33
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.95 E-value=0.005 Score=63.04 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=46.9
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.+++.... ...+.+|||+.
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~----~~~~~gIgv~~ 64 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP--------REDYPQLLQILRDLTEEADTY----CGVQGSVGIGI 64 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhh----cCCCceEEEEe
Confidence 37999999999999999999999987776654 246777777777777665432 22344666664
No 34
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.0021 Score=66.00 Aligned_cols=69 Identities=30% Similarity=0.383 Sum_probs=55.6
Q ss_pred CCcEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCeEEE
Q 006707 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGV 127 (634)
Q Consensus 53 ~~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp-~~~~~a~~~~l~~~l~~~~~~~~~I~aI 127 (634)
.++|+||||-|.|+++++|.|.+|+++......=.. +..++ +.-+..+.+++.+++.+.|.++++|.++
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpAN------~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~ 72 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPAN------IQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAI 72 (301)
T ss_pred CccEEEEEccCCcceEEEEEcCCCcEEEEeccCCce------ecccchHHHHHHHHHHHHHHHHhcCCCHHHhCce
Confidence 357999999999999999999999999977543222 23445 8888999999999999888888777554
No 35
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.94 E-value=0.0027 Score=73.85 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI 557 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~ 557 (634)
++.++..++..+++-+.-.++..+ +..+. .++.|+++||++|.|.+.+++.++||.++.. ....|+.|+|||+
T Consensus 296 tR~~FE~l~~~l~~r~~~~i~~~L---~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi 372 (668)
T PRK13410 296 DRKQFESLCGDLLDRLLRPVKRAL---KDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAI 372 (668)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---HHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHH
Confidence 455555444445544444433333 33343 5789999999999999999999999986644 4567799999999
Q ss_pred HHHhhcCCC
Q 006707 558 LGAVAAKRY 566 (634)
Q Consensus 558 lA~~~~g~~ 566 (634)
.|+.-.+..
T Consensus 373 ~aa~ls~~~ 381 (668)
T PRK13410 373 QAGILAGEL 381 (668)
T ss_pred HHHhhcccc
Confidence 999876643
No 36
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.93 E-value=0.0029 Score=64.51 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhC-Cc----eeccCC-CChhhHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CP----IILPRE-NESVLLG 554 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~p----V~~~~~-~ea~alG 554 (634)
..+++++ .++.++++-.+...++ ..+...++|+++||.++|+.+.+.+.+.++ .+ |.+++. .-..|+|
T Consensus 184 ~~~edI~---aGl~~sia~r~~~~~~---~~~~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlG 257 (262)
T TIGR02261 184 ISAPNIL---KGIHESMADRLAKLLK---SLGALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIG 257 (262)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHh---ccCCCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHH
Confidence 3456744 4888888876544443 333334579999999999999999999884 23 433333 3478999
Q ss_pred HHHHH
Q 006707 555 AAILG 559 (634)
Q Consensus 555 AA~lA 559 (634)
||++|
T Consensus 258 AAl~~ 262 (262)
T TIGR02261 258 AALWG 262 (262)
T ss_pred HHHcC
Confidence 99874
No 37
>CHL00094 dnaK heat shock protein 70
Probab=96.90 E-value=0.003 Score=73.00 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=46.8
Q ss_pred CccEEEEecCCCCCHHHHHHHHHhhCCceecc-CCCChhhHHHHHHHHhhcCCCC
Q 006707 514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGAVAAKRYS 567 (634)
Q Consensus 514 ~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~-~~~ea~alGAA~lA~~~~g~~~ 567 (634)
.++.|+++||++|.|.+.++++++||.++... ...|+.|+|||+.|+...|.++
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~ 382 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK 382 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence 67899999999999999999999999877553 4567999999999998877554
No 38
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.89 E-value=0.0025 Score=65.79 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=44.2
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
+++|||+|+|++|++|+|+ ++++.....+.. .+|. ++..+++++++++.+....+|..++.|+
T Consensus 33 ~~~GIDiGStt~K~Vlld~-~~i~~~~~~~tg---------~~~~---~~a~~~l~~~l~~~g~~~~~v~~~~~TG 95 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD-GELYGYNSMRTG---------NNSP---DSAKNALQGIMDKIGMKLEDINYVVGTG 95 (293)
T ss_pred EEEEEEeCchhEEEEEEeC-CEEEEEEeecCC---------CCHH---HHHHHHHHHHHHHcCCcccceEEEEEEC
Confidence 7999999999999999994 566655444332 2333 2456777888888776556777776654
No 39
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=96.89 E-value=0.0041 Score=59.76 Aligned_cols=86 Identities=23% Similarity=0.385 Sum_probs=64.1
Q ss_pred EEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCceeEEE
Q 006707 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAV 138 (634)
Q Consensus 59 GIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~~~V~~ 138 (634)
|||+|.++++++++|.+|+++.+.+.+++ .+++++.+.+.+.+++++.+.+.. +|||+... ++
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG---~v 63 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP---------TSPEELLDALAELIERLLADYGRS-----GIGISVPG---IV 63 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESS---EE
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhcccc-----cEEEeccc---cC
Confidence 79999999999999999999998887764 578999999999999998875422 77776432 45
Q ss_pred cCC-CCceeeccCCCCCcceeEecccchHHHH
Q 006707 139 DAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQA 169 (634)
Q Consensus 139 d~~-G~pl~~~~~~~~~~~~i~W~D~Ra~~~~ 169 (634)
|.+ |..+. .+...|.+-.-.+..
T Consensus 64 ~~~~g~i~~--------~~~~~~~~~~l~~~l 87 (179)
T PF00480_consen 64 DSEKGRIIS--------SPNPGWENIPLKEEL 87 (179)
T ss_dssp ETTTTEEEE--------CSSGTGTTCEHHHHH
T ss_pred cCCCCeEEe--------cCCCCcccCCHHHHh
Confidence 555 34442 455678886544443
No 40
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.88 E-value=0.00096 Score=64.34 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=63.2
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-ceeE
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSLV 136 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~~~V 136 (634)
||||+|.|.+-++++|.+..++...+.+.. |++....+.++|++++++.+.++++|..|.++++ .+-.
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt-----------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~~tNA 70 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT-----------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTVATNA 70 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC-----------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHHHHHH
Confidence 799999999999999988788888887753 4566678888999998888878899999999987 5555
Q ss_pred EEcCCCCce
Q 006707 137 AVDADGSPV 145 (634)
Q Consensus 137 ~~d~~G~pl 145 (634)
++..+|.++
T Consensus 71 l~e~~g~~v 79 (176)
T PF05378_consen 71 LLERKGARV 79 (176)
T ss_pred HHhccCCCc
Confidence 666667655
No 41
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.84 E-value=0.0014 Score=56.47 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=26.3
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeee
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~ 86 (634)
+||||+|.|.+|++++|.+|+++...+.+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~ 32 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIP 32 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEE
Confidence 799999999999999999999887666544
No 42
>PRK09557 fructokinase; Reviewed
Probab=96.73 E-value=0.0094 Score=62.52 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=53.8
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcee
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~~~ 135 (634)
++||||+|.|++|++++|.+|+++...+.+++ .++++++.+.+.+.+++..+.. ..+.+||++...
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~pG-- 66 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP--------RDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGIPG-- 66 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHhhc----CCceEEEecCcc--
Confidence 47999999999999999999999887766554 2467778888888777776542 345778887643
Q ss_pred EEEcCC-CCc
Q 006707 136 VAVDAD-GSP 144 (634)
Q Consensus 136 V~~d~~-G~p 144 (634)
++|.+ |..
T Consensus 67 -~vd~~~g~i 75 (301)
T PRK09557 67 -SISPYTGLV 75 (301)
T ss_pred -cCcCCCCeE
Confidence 34643 543
No 43
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.68 E-value=0.0075 Score=63.50 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCC-hhhHHHHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILGA 560 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-a~alGAA~lA~ 560 (634)
+++++. .++.++++-+.... .+++...+ +.|+++||.+.|..+...+.|.+|++|.+|+.++ ..|.|||++|.
T Consensus 316 ~~EdI~---AGl~~Sv~~~v~~~--~~~~~~i~-~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 316 SPEDIL---AGLAYSVAENVAEK--VIKRVDIE-EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred CHHHHH---HHHHHHHHHHHHHH--HhhccCCC-CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHh
Confidence 455633 35555555443321 23332222 2399999999999999999999999999998665 78999999876
Q ss_pred h
Q 006707 561 V 561 (634)
Q Consensus 561 ~ 561 (634)
.
T Consensus 390 ~ 390 (396)
T COG1924 390 E 390 (396)
T ss_pred h
Confidence 4
No 44
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.67 E-value=0.0036 Score=64.60 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=51.4
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEE
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVG 128 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIg 128 (634)
||||.|+|++|++++|.+|+++.+....-..+ ...+.+...+.+.+++.+++++.+.+..+|..+.
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n~-----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~ 66 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGANY-----NSVGFEEAMENIKEAIEEALSQAGLSPDDIAAIC 66 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TTH-----HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCCC-----CCCCcchhhhHHHHHHHHHHHHcCCCccccceee
Confidence 79999999999999999999887765533211 1245678888999999999999888777766553
No 45
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.67 E-value=0.0061 Score=70.64 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCC-ceeccCCCChhhHHHHHHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAILG 559 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~ea~alGAA~lA 559 (634)
-++.++..++..+++-+.-.++..++.-.-....++.|+++||.+|-|.+.+++.+.||. |+......|+.|+|||+.|
T Consensus 320 ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a 399 (657)
T PTZ00186 320 ISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLG 399 (657)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHH
Confidence 346666655566666555554444432211123678999999999999999999999997 4555567789999999999
Q ss_pred HhhcCC
Q 006707 560 AVAAKR 565 (634)
Q Consensus 560 ~~~~g~ 565 (634)
+.-.+.
T Consensus 400 ~~l~~~ 405 (657)
T PTZ00186 400 GVLRGD 405 (657)
T ss_pred HHhccc
Confidence 976553
No 46
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.65 E-value=0.011 Score=62.08 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=48.3
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
++|||+|.|++|++++|.+|+++.+.+.+.+ ..+++++.+.+.+.++++.... ..+.+|||+..
T Consensus 2 ~lgidig~t~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~~igia~p 65 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLELQWEERVPTP--------RDSYDAFLDAVCELVAEADQRF----GCKGSVGIGIP 65 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCcEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCcceEEEeCC
Confidence 6999999999999999999999987766554 2467888888888887776542 22345666553
No 47
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.61 E-value=0.0066 Score=70.35 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILG 559 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA 559 (634)
-++.++-.++..+++.+.-.++..++...-....++.|+++||.++.|.+.+++.+.||.++.. ....++.|+|||+.|
T Consensus 293 itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~a 372 (627)
T PRK00290 293 LTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQG 372 (627)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHH
Confidence 3566666555566655554444444332211235789999999999999999999999987754 446779999999999
Q ss_pred HhhcCC
Q 006707 560 AVAAKR 565 (634)
Q Consensus 560 ~~~~g~ 565 (634)
+.-.+.
T Consensus 373 a~l~~~ 378 (627)
T PRK00290 373 GVLAGD 378 (627)
T ss_pred HHhcCC
Confidence 876664
No 48
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.61 E-value=0.0062 Score=64.13 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=50.2
Q ss_pred CCCCcEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEec
Q 006707 51 ARSRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (634)
Q Consensus 51 ~m~~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis 130 (634)
.|...++||||.|+|.+|++|.+++..++.......+ | .|. ..+++++++++.+....+|.++++|
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~-----g----~p~-----~~~~l~~~le~l~~~~~~I~~~~~T 196 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK-----G----RPI-----AEKALKEALEELGEKLEEILGLGVT 196 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC-----C----Chh-----HHHHHHHHHHHcccChheeeeeeee
Confidence 4556789999999999999999987766665544432 1 222 2456777777777666899999999
Q ss_pred CC
Q 006707 131 AT 132 (634)
Q Consensus 131 ~~ 132 (634)
+-
T Consensus 197 GY 198 (396)
T COG1924 197 GY 198 (396)
T ss_pred cc
Confidence 84
No 49
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.53 E-value=0.0051 Score=66.81 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=51.5
Q ss_pred cEEEEEecCCcccEEEEEc-CCCcEEEEEEeeecccc-CCC------------ccccCHHHHHHHHHHHHHHHHHHcCCC
Q 006707 55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGD------------CIEQSSTDIWHAICAAVDSACSLANVD 120 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d-~~g~vl~~~~~~~~~~~-~~g------------~~eqdp~~~~~a~~~~l~~~l~~~~~~ 120 (634)
+|-++||+|||.+.+.++| .+|+++++.+...|... ..+ ..++=-..+++.+.+.+.+++++.+++
T Consensus 1 ~~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~ 80 (412)
T PF14574_consen 1 NYGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGIS 80 (412)
T ss_dssp -EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CEEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3678999999999999999 68999999988877542 221 112222345666677777777777999
Q ss_pred CCCeEEEEecC
Q 006707 121 GEEVKGVGFAA 131 (634)
Q Consensus 121 ~~~I~aIgis~ 131 (634)
+++|..|.|++
T Consensus 81 ~~~I~~i~i~G 91 (412)
T PF14574_consen 81 PEDIYEIVIVG 91 (412)
T ss_dssp GGGEEEEEEEE
T ss_pred HHHeEEEEEEe
Confidence 99999998875
No 50
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.49 E-value=0.12 Score=53.42 Aligned_cols=119 Identities=17% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCccCCC-CcE-EEecCCCCC--CCCCCCCCcceeeeC-C-----CCCCCHHHHHHHHHH
Q 006707 423 VSLFELLNGTLESMIHERNSPFVAALT-EDI-HVLPDFHGN--RSPIADPKSKGIICG-M-----TLDSSEKQLALLYLA 492 (634)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~~p~~~~g~-~gl-~flP~l~Ge--r~P~~d~~arg~~~G-l-----~~~~~~~~~~~~~rA 492 (634)
..+++++.+++++ |. ..+ +.+-.+.|. ..+--+.+..++-+| + ....+++|++ ++
T Consensus 145 ~~~~~el~~lA~~------------G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiA---aS 209 (279)
T TIGR00555 145 IQTFDELLEMAQH------------GDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIA---AS 209 (279)
T ss_pred CCCHHHHHHHHHc------------CCCcccccccccccCCCCCCCCCCcceeeeccchhhccccccCCCHHHHH---HH
Confidence 4667888888764 21 111 122333331 112234556666677 3 2334578865 49
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccEEEEecC-CCCCHHHHHHHHHhhC---CceeccCCCC-hhhHHHHH
Q 006707 493 TVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG---CPIILPRENE-SVLLGAAI 557 (634)
Q Consensus 493 vlEgia~~~r~~~~~l~~~g~~~~~I~~~GG-~a~s~~~~Qi~Advlg---~pV~~~~~~e-a~alGAA~ 557 (634)
++..++..+-.+.- +...-...++|++.|| ...|+..++.++..++ ..+..++..+ .+|+|||+
T Consensus 210 Ll~mV~~nIg~lA~-~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 210 LLGLIGNNIGQIAY-LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHH-HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 99999886655433 3332345789999999 6789999999999986 4455555444 78999986
No 51
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.47 E-value=0.0063 Score=61.71 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCC-ChhhHHHHH
Q 006707 489 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAI 557 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~-ea~alGAA~ 557 (634)
++..+++.+.-.++..++. .+++.|+++||+|+.+.+.+.+.+.||.||.++..+ +++|+|||+
T Consensus 174 ~i~~~~~~i~~~i~~~l~~-----~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 174 VVKPVYQKMASIVKRHIEG-----QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHh-----CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 4556777777666666552 356799999999999999999999999999887654 589999986
No 52
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.43 E-value=0.011 Score=61.02 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCC-hhhHHHHHH
Q 006707 485 QLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL 558 (634)
Q Consensus 485 ~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-a~alGAA~l 558 (634)
.+..++++++|-+.-.++..++. ..++.|+++||+|+-+.+.+++++.||.||.++..++ ++++|+|+.
T Consensus 197 ~~~~ii~~~~~~i~~~i~~~l~~-----~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 197 EIFPVVKPVVEKMASIVARHIEG-----QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALS 266 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhh
Confidence 34445567777666666655542 3678999999999999999999999999999977664 899999974
No 53
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.41 E-value=0.011 Score=68.37 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILG 559 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA 559 (634)
-++.++..++..+++.+.-.++..++..+-....++.|+++||+++.|.+.+++++.||.++.. ....++.|+|||+.|
T Consensus 295 itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a 374 (616)
T PRK05183 295 ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQA 374 (616)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHH
Confidence 3456666555556665554444444332211235789999999999999999999999976543 456779999999999
Q ss_pred HhhcCC
Q 006707 560 AVAAKR 565 (634)
Q Consensus 560 ~~~~g~ 565 (634)
+.-.+.
T Consensus 375 ~~l~~~ 380 (616)
T PRK05183 375 DILAGN 380 (616)
T ss_pred HHhccc
Confidence 876553
No 54
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.39 E-value=0.011 Score=68.15 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILG 559 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA 559 (634)
-++.++..++.-+++.+.-.++..++...-....++.|+++||+++.|.+.+++.+.|+.++.. ....++.|+|||+.|
T Consensus 279 itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a 358 (599)
T TIGR01991 279 LTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQA 358 (599)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHH
Confidence 3466666555666666555555444432211235789999999999999999999999976654 446789999999999
Q ss_pred HhhcCC
Q 006707 560 AVAAKR 565 (634)
Q Consensus 560 ~~~~g~ 565 (634)
+.-.+.
T Consensus 359 ~~l~~~ 364 (599)
T TIGR01991 359 DLLAGN 364 (599)
T ss_pred HHhccc
Confidence 876543
No 55
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.37 E-value=0.01 Score=68.46 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGA 560 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA~ 560 (634)
++.++..++.-+++.+.-.++..++..+-....++.|+++||.++.|.+.+++.+.||.++.. ....++.|+|||+.|+
T Consensus 292 tr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa 371 (595)
T TIGR02350 292 TRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGG 371 (595)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHH
Confidence 466665545555554444444333322111235789999999999999999999999987755 4467799999999999
Q ss_pred hhcCC
Q 006707 561 VAAKR 565 (634)
Q Consensus 561 ~~~g~ 565 (634)
.-.+.
T Consensus 372 ~l~~~ 376 (595)
T TIGR02350 372 VLKGD 376 (595)
T ss_pred HhcCC
Confidence 76554
No 56
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.29 E-value=0.013 Score=62.95 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=12.8
Q ss_pred EecccccchhhHHHHHHHhh
Q 006707 389 LTEGGQSATGALLDYIIENH 408 (634)
Q Consensus 389 ~~~~~~~~~G~~l~W~~~~~ 408 (634)
+..-|...+|+-++-+.+.+
T Consensus 268 MNdkCAAGTGrFLE~~A~~L 287 (404)
T TIGR03286 268 MGGICAGASGRFLEMTAKRL 287 (404)
T ss_pred EcCcccccCcHHHHHHHHHh
Confidence 44566667778776665554
No 57
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.25 E-value=0.015 Score=66.71 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILG 559 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA 559 (634)
-++.++..+++-+++-+.-.++..++... ...++.|+++||.++.|.+.+++.+.||.++.. .+..++.|+|||+.|
T Consensus 277 itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a 354 (595)
T PRK01433 277 INKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQA 354 (595)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHH
Confidence 34566655555566655544444444332 246899999999999999999999999987765 346679999999999
Q ss_pred HhhcC
Q 006707 560 AVAAK 564 (634)
Q Consensus 560 ~~~~g 564 (634)
+.-.+
T Consensus 355 ~~l~~ 359 (595)
T PRK01433 355 ENLIA 359 (595)
T ss_pred HHhhC
Confidence 87544
No 58
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.20 E-value=0.0092 Score=68.76 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGA 560 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA~ 560 (634)
++.++..++.-+++.+.-.++.+++.......+++.|+++||+++.|.+.+++.+.|+.++.. .+..++.|+|||+.|+
T Consensus 296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHH
T ss_pred ccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchh
Confidence 456665444455555444444444332212235789999999999999999999999987765 4466799999999998
Q ss_pred hhcCC
Q 006707 561 VAAKR 565 (634)
Q Consensus 561 ~~~g~ 565 (634)
.-.+.
T Consensus 376 ~~~~~ 380 (602)
T PF00012_consen 376 ILSGS 380 (602)
T ss_dssp HHHTS
T ss_pred hhccc
Confidence 76653
No 59
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=95.95 E-value=0.016 Score=61.74 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCcc-EEEEecCCCCCHHHHHHHHHhhCCceeccC-CCChhhHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HG-HKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 557 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g-~~~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~ea~alGAA~ 557 (634)
+++++..++...++.+.-.++..++.... .. ..++ .|+++||+|+-+.+.+++++.|+.||.+.. ..++.|+|||+
T Consensus 240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~ 319 (336)
T PRK13928 240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGK 319 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 35566656667777777777666665431 11 1244 799999999999999999999999998876 55689999999
Q ss_pred HHHhh
Q 006707 558 LGAVA 562 (634)
Q Consensus 558 lA~~~ 562 (634)
.+...
T Consensus 320 ~~~~~ 324 (336)
T PRK13928 320 MLENI 324 (336)
T ss_pred HHhch
Confidence 97663
No 60
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.91 E-value=0.017 Score=67.33 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAI 557 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~ 557 (634)
++.++..++.-+++-+.-.++..+ +..+. .++.|+++||.++.|.+.+++++.||.++.. ....++.|+|||+
T Consensus 335 tR~efe~l~~~l~~~~~~~i~~~L---~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi 411 (663)
T PTZ00400 335 SRAKLEELTHDLLKKTIEPCEKCI---KDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAI 411 (663)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHH
Confidence 456655544455554444444433 33333 5789999999999999999999999987654 4467899999999
Q ss_pred HHHhhcCC
Q 006707 558 LGAVAAKR 565 (634)
Q Consensus 558 lA~~~~g~ 565 (634)
.|+.-.+.
T Consensus 412 ~aa~l~~~ 419 (663)
T PTZ00400 412 QAGVLKGE 419 (663)
T ss_pred HHHhhcCC
Confidence 99876553
No 61
>PRK13318 pantothenate kinase; Reviewed
Probab=95.86 E-value=0.028 Score=57.66 Aligned_cols=63 Identities=21% Similarity=0.405 Sum_probs=43.8
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
+|+||+|.|++|.+++| +|+++...+.+.+. ...++++. +.++++++..+.+..+|.+|++++
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~~-------~~~~~~~~----~~l~~l~~~~~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTDS-------RRTADEYG----VWLKQLLGLSGLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCCC-------CCCHHHHH----HHHHHHHHHcCCCcccCceEEEEE
Confidence 68999999999999999 68887766665542 22344444 344555565555556788888864
No 62
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.83 E-value=0.028 Score=57.41 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=45.2
Q ss_pred EEEEEecCCcccEEEEEcCCCcE-EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 56 VFLGVDVGTGSARAGLFDESGKL-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~v-l~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
+++|||+|+|++|++|+|.+++. .......++.. ..+| .++..+++++++++.++...+|..|+.|+-
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~~TGY 70 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRIR------QRDP---FKLAEDAYDDLLEEAGLAAADVAYCATTGE 70 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecCC------CCCH---HHHHHHHHHHHHHHcCCChhheEEEEEECC
Confidence 68999999999999999965542 22222222210 1234 234567788888887776678888877664
No 63
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.78 E-value=0.029 Score=65.50 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=45.1
Q ss_pred CccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHHHhhcCC
Q 006707 514 KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGAVAAKR 565 (634)
Q Consensus 514 ~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA~~~~g~ 565 (634)
.++.|+++||.+|.|.+.+++.+.||.++.. ....|+.|+|||+.|+.-.+.
T Consensus 365 dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 365 DIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred HccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999987654 456789999999999976653
No 64
>PRK13321 pantothenate kinase; Reviewed
Probab=95.76 E-value=0.025 Score=57.96 Aligned_cols=63 Identities=25% Similarity=0.418 Sum_probs=42.7
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
+|+||+|.|++|.+++|.+ +++...+.+.+ ...+++++.+.+... +++.+.+.++|.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-------~~~~~~~~~~~l~~l----~~~~~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-------KSRTSDELGILLLSL----FRHAGLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecC-------CCCCHHHHHHHHHHH----HHHcCCChhhCCeEEEEe
Confidence 6899999999999999954 77766555544 233556666555444 444444456788888865
No 65
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.73 E-value=0.027 Score=65.60 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEecCCCCCHHHHHHHHHhhC-Cce-eccCCCChhhHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPI-ILPRENESVLLGAA 556 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV-~~~~~~ea~alGAA 556 (634)
++.++-.++.-+++.+.-.++..++ ..+. .++.|+++||.+|-|.+.+++.+.|+ .++ ......|+.|+|||
T Consensus 300 tR~~fe~l~~~l~~~~~~~i~~~L~---~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa 376 (653)
T PTZ00009 300 SRARFEELCGDYFRNTLQPVEKVLK---DAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAA 376 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhh
Confidence 4555554444555544444444433 3332 57899999999999999999999996 455 44567889999999
Q ss_pred HHHHhhcC
Q 006707 557 ILGAVAAK 564 (634)
Q Consensus 557 ~lA~~~~g 564 (634)
+.|+.-.+
T Consensus 377 ~~aa~ls~ 384 (653)
T PTZ00009 377 VQAAILTG 384 (653)
T ss_pred hhHHHhcC
Confidence 99987654
No 66
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.53 E-value=0.034 Score=64.76 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CccEEEEecCCCCCHHHHHHHHHhhC-Cceec-cCCCChhhHHH
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPIIL-PRENESVLLGA 555 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~-~~~~ea~alGA 555 (634)
-++.++..++.-+++-+.-.++.. |+..+. .++.|+++||.+|.|.+.+++.+.|+ .++.. ....++.|+||
T Consensus 294 itR~~fe~l~~~l~~~~~~~i~~~---L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GA 370 (653)
T PRK13411 294 LTRAKFEELTKDLVEATIEPMQQA---LKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGA 370 (653)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHH
Confidence 345565544444444433333333 334444 37899999999999999999999997 55543 45678999999
Q ss_pred HHHHHhhcCC
Q 006707 556 AILGAVAAKR 565 (634)
Q Consensus 556 A~lA~~~~g~ 565 (634)
|+.|+.-.+.
T Consensus 371 Ai~aa~l~~~ 380 (653)
T PRK13411 371 AIQAGVLGGE 380 (653)
T ss_pred HHHHHhhcCC
Confidence 9999876553
No 67
>PRK11678 putative chaperone; Provisional
Probab=95.52 E-value=0.071 Score=59.17 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=61.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhC-CceeccCCCChhhHHHH
Q 006707 478 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPRENESVLLGAA 556 (634)
Q Consensus 478 ~~~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg-~pV~~~~~~ea~alGAA 556 (634)
...-+++++..+++.+++-+.-.++.. ++..+..++.|+++||.++.|.+.+++.+.|+ .|+...+..++.|.|+|
T Consensus 366 ~~~ItR~efe~ii~~~l~ri~~~i~~~---L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla 442 (450)
T PRK11678 366 ATEISQQGLEEAISQPLARILELVQLA---LDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLA 442 (450)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHH
Confidence 444556776655555555544444433 34456667899999999999999999999996 68888888889999999
Q ss_pred HHHHh
Q 006707 557 ILGAV 561 (634)
Q Consensus 557 ~lA~~ 561 (634)
+.|..
T Consensus 443 ~~a~~ 447 (450)
T PRK11678 443 RWAQV 447 (450)
T ss_pred HHHHh
Confidence 98865
No 68
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=95.44 E-value=0.088 Score=54.84 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=46.3
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
++|||+|.++++++++|.+|+++...+.+++ ...+++.+.+.+.+.+++... ++.+|||+..
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~-------~~~~igi~~p 64 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP-------ASQTPEALRQALSALVSPLQA-------QADRVAVAST 64 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCC-------CCCCHHHHHHHHHHHHHHhhh-------cCcEEEEeCc
Confidence 7999999999999999999999987776664 123567777777777766532 3456777653
No 69
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.38 E-value=0.092 Score=51.05 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=50.4
Q ss_pred EEEEecCCcccEEEEEc--CCC--cEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d--~~g--~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
++|||+||+++|+++.. .+| ++++.... |... ..|. -.|.+..-+++.++++++-++.+...++ ..+++++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~--~s~gi~~G~-I~d~~~~~~~I~~ai~~ae~~~~~~i~~-V~v~i~g 76 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEV--PSRGIRKGV-IVDIEAAARAIREAVEEAERMAGVKIDS-VYVGISG 76 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEe--cCCCccCcE-EECHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcC
Confidence 47999999999999996 345 45555544 3222 4443 4689999989888888887766765544 4577777
Q ss_pred C
Q 006707 132 T 132 (634)
Q Consensus 132 ~ 132 (634)
.
T Consensus 77 ~ 77 (187)
T smart00842 77 R 77 (187)
T ss_pred C
Confidence 5
No 70
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=95.05 E-value=0.057 Score=57.48 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-c-cEEEEecCCCCCHHHHHHHHHhhCCceeccC-CCChhhHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 557 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g~~-~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~ea~alGAA~ 557 (634)
+++++..++...++.+.-.++..++.... .... . ..|+++||+++-+.+.+.+.+.|+.||.+.. ..++.|+|||+
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 34555555666777777666666654321 0011 2 3599999999999999999999999998876 45588999999
Q ss_pred HHHh
Q 006707 558 LGAV 561 (634)
Q Consensus 558 lA~~ 561 (634)
.+..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 9866
No 71
>PRK00292 glk glucokinase; Provisional
Probab=94.54 E-value=0.1 Score=55.07 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=25.5
Q ss_pred cEEEEEecCCcccEEEEEc-CCCcEEEEEEeee
Q 006707 55 SVFLGVDVGTGSARAGLFD-ESGKLLGSASSPI 86 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d-~~g~vl~~~~~~~ 86 (634)
+++||||||.|++|++++| .+++++...+.+.
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~ 34 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYAT 34 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEec
Confidence 4789999999999999999 4666666655544
No 72
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=94.37 E-value=0.086 Score=56.07 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCccE-EEEecCCCCCHHHHHHHHHhhCCceeccC-CCChhhHHHHHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAH-G-HKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 558 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~-g-~~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~ea~alGAA~l 558 (634)
++++..++...++.+.-.++..++..... . ...++ |+++||+++-+.+.+.+++.|+.||.+.. ..++.++|||+.
T Consensus 246 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~ 325 (335)
T PRK13930 246 SEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKA 325 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 45555555566666666666665543210 0 11244 99999999999999999999999998875 455889999998
Q ss_pred HHh
Q 006707 559 GAV 561 (634)
Q Consensus 559 A~~ 561 (634)
|..
T Consensus 326 ~~~ 328 (335)
T PRK13930 326 LEN 328 (335)
T ss_pred HhC
Confidence 764
No 73
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.47 Score=50.28 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh-CCceeccC-----CCChhhHHHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIILPR-----ENESVLLGAA 556 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl-g~pV~~~~-----~~ea~alGAA 556 (634)
.++.. +.+.|-.+ ..+++.+.......++++++||+++|+++|+.+|..+ |.+|...+ ....-|.+=|
T Consensus 265 a~Dv~---aTL~eltA---~tIv~s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA 338 (371)
T COG2377 265 AEDVQ---ATLVELTA---ATIVKSVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFA 338 (371)
T ss_pred HHHHH---HHHHHHHH---HHHHHHHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHH
Confidence 45533 47777444 4445554433457899999999999999999999999 55555322 2233455556
Q ss_pred HHHHhh
Q 006707 557 ILGAVA 562 (634)
Q Consensus 557 ~lA~~~ 562 (634)
.+|...
T Consensus 339 ~LA~r~ 344 (371)
T COG2377 339 WLAWRT 344 (371)
T ss_pred HHHHHH
Confidence 666543
No 74
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.14 Score=57.77 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGA 560 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA~ 560 (634)
.++++-.+..-++|=+-.-+...++...-..-++.-|=++||++|.+.+.+++++.||.+..+ ...+|+.|+|||+.+|
T Consensus 301 ~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcA 380 (727)
T KOG0103|consen 301 KREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCA 380 (727)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHH
Confidence 355665566677776666666655553322345668889999999999999999999999976 4577899999999888
Q ss_pred hhc
Q 006707 561 VAA 563 (634)
Q Consensus 561 ~~~ 563 (634)
.-.
T Consensus 381 IlS 383 (727)
T KOG0103|consen 381 ILS 383 (727)
T ss_pred hcC
Confidence 644
No 75
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=94.01 E-value=0.27 Score=53.22 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=51.2
Q ss_pred EEEEecCCcccEEEEEc--CCC--cEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d--~~g--~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
++||||||+++|+++.. .++ ++++....|..- -..|. -.|++..-+++.++++++-++++...++ +.+++++.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~g-i~~G~-I~d~~~~~~~i~~al~~~e~~~~~~i~~-v~~~v~g~ 78 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRG-IKKGV-INDIEAAVGSIQRAIEAAELMAGCEIRS-VIVSISGA 78 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCC-ccCcE-EEcHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEccc
Confidence 68999999999999986 334 455555544321 14443 4688988888888888876666765544 46788775
Q ss_pred c
Q 006707 133 C 133 (634)
Q Consensus 133 ~ 133 (634)
+
T Consensus 79 ~ 79 (371)
T TIGR01174 79 H 79 (371)
T ss_pred c
Confidence 4
No 76
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=94.00 E-value=0.15 Score=50.37 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=50.4
Q ss_pred CCcEEEEEecCCcccEEEEEcCCCc-EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEec
Q 006707 53 SRSVFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFA 130 (634)
Q Consensus 53 ~~~~~LGIDiGTtsiKavl~d~~g~-vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~-~~~~I~aIgis 130 (634)
....||+||+|.|++|++++...|. .+...+..|++-. .......+++++.+.+++.+.+++.+. +..+..-+|+|
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~--~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfT 138 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPE--ELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFT 138 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--H--HHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCCh--HHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence 3456899999999999999995443 3333334443210 112234589999999999999988654 34556667765
No 77
>PLN02920 pantothenate kinase 1
Probab=93.95 E-value=2.6 Score=45.44 Aligned_cols=163 Identities=14% Similarity=0.092 Sum_probs=95.4
Q ss_pred eEEEEecccceeeeeeCcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 006707 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (634)
Q Consensus 351 ~~~is~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~ 430 (634)
-+++++||...+..+.. ++.|-..+++.-||..+-=|...+. +..+|+++-
T Consensus 167 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sfdEll 217 (398)
T PLN02920 167 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTSVGGGTFWGLGKLLT------------KCKSFDELL 217 (398)
T ss_pred eEEEEcCCCEEEEEEeC-----------------CCcEEEEcccccchHhHHHHHHHHc------------CCCCHHHHH
Confidence 58899999876554432 1234444555556655533333332 346778887
Q ss_pred HHHHhhhhhcCCCCccCCCC-cE-EEecCCCCCC---CCCCCCCcceeeeC--CCC-----CCCHHHHHHHHHHHHHHHH
Q 006707 431 GTLESMIHERNSPFVAALTE-DI-HVLPDFHGNR---SPIADPKSKGIICG--MTL-----DSSEKQLALLYLATVQGIA 498 (634)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~-gl-~flP~l~Ger---~P~~d~~arg~~~G--l~~-----~~~~~~~~~~~rAvlEgia 498 (634)
+++++ |.. .+ +.+-.+.|.. .+--..++.++-+| ... +-++++++ |+++--|+
T Consensus 218 ~lA~~------------Gd~~nvDllVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia---~SLL~mVs 282 (398)
T PLN02920 218 ELSHQ------------GNNRVIDMLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVA---RSLLRMIS 282 (398)
T ss_pred HHHhC------------CCccccCceeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHH---HHHHHHHH
Confidence 77754 322 12 3344444421 22245566677666 221 23467855 59999998
Q ss_pred HHHHHHHHHHHhCCCCccEEEEecCCCCCH-HHHHHHHHhhC------C-ceeccCCCChhhHHHHHH
Q 006707 499 YGTRHIVEHCNAHGHKIDTLLACGGLAKNP-LFLQQHADIIG------C-PIILPRENESVLLGAAIL 558 (634)
Q Consensus 499 ~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~-~~~Qi~Advlg------~-pV~~~~~~ea~alGAA~l 558 (634)
+.+-++.- |...-..+++|++.|+..++. ..++.++-..+ + ++..-...-.+|+||++.
T Consensus 283 ~nIgqiA~-L~A~~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~ 349 (398)
T PLN02920 283 NNIGQISY-LNALRFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMS 349 (398)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHh
Confidence 88877653 322235688999999998876 66676666543 2 333333444799999764
No 78
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=93.85 E-value=0.15 Score=54.30 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-c-cEEEEecCCCCCHHHHHHHHHhhCCceeccC-CCChhhHHHHHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 558 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~-~g~~-~-~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~ea~alGAA~l 558 (634)
++++...+...++++.-.++..++.... .... . +.|+++||+|+-+.+.+.+++.|+.||.+.. ..++.|+|||++
T Consensus 245 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~ 324 (333)
T TIGR00904 245 SVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKA 324 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHH
Confidence 3444444555566665555555554321 1111 2 3699999999999999999999999999876 556899999998
Q ss_pred HHh
Q 006707 559 GAV 561 (634)
Q Consensus 559 A~~ 561 (634)
+..
T Consensus 325 ~~~ 327 (333)
T TIGR00904 325 LED 327 (333)
T ss_pred HhC
Confidence 654
No 79
>PRK12408 glucokinase; Provisional
Probab=93.57 E-value=0.14 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEecCCcccEEEEEcCCCc
Q 006707 56 VFLGVDVGTGSARAGLFDESGK 77 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~ 77 (634)
++|++|||.|++|..++|++|+
T Consensus 17 ~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred cEEEEEcChhhhheeEEeccCC
Confidence 4899999999999999998876
No 80
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=93.51 E-value=0.19 Score=53.93 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCCHHHHHHHHHhhC--CceeccCC
Q 006707 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPRE 547 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~~ 547 (634)
+.++|-.++.+...+-.+.. .+..++.|+++||.+.|+.+++.+.+-+. .||.+.+.
T Consensus 269 ~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 269 KLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 46777777777776666544 22367899999999988877766666654 79988653
No 81
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=93.45 E-value=0.35 Score=49.43 Aligned_cols=72 Identities=24% Similarity=0.264 Sum_probs=56.8
Q ss_pred CcEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-eEEEEec
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVGFA 130 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~-I~aIgis 130 (634)
+.+|.|+|-|-|+.|.+++|++++++..++..-..+. -.+.+...+.+.+.++++.++.+.+.+. +.+++++
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~-----~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL~ 74 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHW-----LIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGLG 74 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccccc-----cCCchHHHHHHHHHHHHHHhhcCCCccCccceeeee
Confidence 3689999999999999999999999998876554322 2335667788888899999998888776 6666653
No 82
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=93.31 E-value=0.27 Score=52.76 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCC-----CChhhHHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-----NESVLLGAA 556 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~-----~ea~alGAA 556 (634)
+++++. +-+.|=.|.++.+.++.+. ...++|+++|||++|+.+++.+...+..+|...+. .---|+.-|
T Consensus 260 s~~D~~---aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA 333 (365)
T PRK09585 260 SPEDVQ---ATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFA 333 (365)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHH
Confidence 456643 3666655555555554332 23468999999999999999999999766665443 123466667
Q ss_pred HHHHhhc
Q 006707 557 ILGAVAA 563 (634)
Q Consensus 557 ~lA~~~~ 563 (634)
++|...+
T Consensus 334 ~La~~~l 340 (365)
T PRK09585 334 WLAVRTL 340 (365)
T ss_pred HHHHHHH
Confidence 7776544
No 83
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.07 E-value=0.18 Score=53.76 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcc-EEEEecCCCCCHHHHHHHHHhhCCceeccC-CCChhhHHHHHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 558 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~-~-g~~~~-~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~~ea~alGAA~l 558 (634)
++++...+..+++.+.-.++..++.... . ...++ .|+++||+|+=+.+.+.+++.|+.||.+.. ..++.++||+..
T Consensus 244 ~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 244 SKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 3444433344455444444444443321 1 12244 599999999999999999999999999864 455788999876
No 84
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=92.93 E-value=0.46 Score=49.00 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=41.2
Q ss_pred CcEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~ 119 (634)
.++++|||+||+++|+++.+.+++++.....+-.-. ..|. -.|.+...+++..+++.+-+..+.
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~v-r~G~-i~di~~a~~~i~~~~~~ae~~~g~ 86 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVV-RDGI-VVDFIGAVTIVRRLKATLEEKLGR 86 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCEEEEEecccccc-CCCE-EeeHHHHHHHHHHHHHHHHHHhCC
Confidence 468999999999999999987777655544432211 4454 456666666665555443333343
No 85
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.31 Score=51.72 Aligned_cols=78 Identities=21% Similarity=0.224 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhCC---CCccEEEEecCCCCCHHHHHHHHHhhC-C-ceeccCCCChhhHHHHHH
Q 006707 489 LYLATVQGIAYGTRH-----IVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIG-C-PIILPRENESVLLGAAIL 558 (634)
Q Consensus 489 ~~rAvlEgia~~~r~-----~~~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg-~-pV~~~~~~ea~alGAA~l 558 (634)
+.||-+|-+-+-+.. +-..|+..+ ..+.+|+++||.+|-|-..|++-|.|+ . |-.-....|+.|.|||..
T Consensus 329 LtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQ 408 (663)
T KOG0100|consen 329 LTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQ 408 (663)
T ss_pred hhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhh
Confidence 345777776665433 222333333 468899999999999999999999994 3 444456788999999999
Q ss_pred HHhhcCCC
Q 006707 559 GAVAAKRY 566 (634)
Q Consensus 559 A~~~~g~~ 566 (634)
|++-.|.-
T Consensus 409 aGvlsGee 416 (663)
T KOG0100|consen 409 AGVLSGEE 416 (663)
T ss_pred hccccccc
Confidence 99877764
No 86
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=92.69 E-value=0.25 Score=57.48 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=41.0
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
..+||||||.|++|.+++|++|+++...+.+.+. ++.+.+.+++++++.+. .++.+|||+.
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~--------------~~~~~~~i~~~l~~~~~--~~~~~igig~ 78 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGEITQIRVYPGAD--------------YPTLTDAIRKYLKDVKI--GRVNHAAIAI 78 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCcccceeEEecCC--------------CCCHHHHHHHHHHhcCC--CCcceEEEEE
Confidence 4589999999999999999999887765554431 12344556666655432 2466666653
No 87
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=92.40 E-value=0.6 Score=50.23 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCC-ceeccCC-----CChhhHHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRE-----NESVLLGA 555 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~-----~ea~alGA 555 (634)
+++++ .+-+.|=.|.++...++.+. .++++|+++|||++|+.+++.+...+.. +|...+. .---|+.-
T Consensus 258 ~~~D~---~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF 331 (364)
T PF03702_consen 258 SPEDI---LATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF 331 (364)
T ss_dssp -HHHH---HHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH
T ss_pred ChHHH---HHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH
Confidence 36674 34777777766666665543 3478999999999999999999998864 8876441 22357888
Q ss_pred HHHHHhhc-CCCCCHHH
Q 006707 556 AILGAVAA-KRYSSLIE 571 (634)
Q Consensus 556 A~lA~~~~-g~~~~~~e 571 (634)
|++|...+ |.-.++..
T Consensus 332 A~La~~~~~g~~~~lp~ 348 (364)
T PF03702_consen 332 AWLAYRRLNGLPNNLPS 348 (364)
T ss_dssp HHHHHHHHCT---S-HH
T ss_pred HHHHHHHHcCCCCCCCc
Confidence 88887654 33344443
No 88
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=0.63 Score=53.40 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=46.9
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHhhCCceec-cCCCChhhHHHHHHHHhhcCCC
Q 006707 513 HKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGAVAAKRY 566 (634)
Q Consensus 513 ~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~-~~~~ea~alGAA~lA~~~~g~~ 566 (634)
.+++.|+++||.+|-|...+.+++.|+.++.. ....|+.|+|||+.|+.-.|..
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~ 362 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEV 362 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcc
Confidence 36889999999999999999999999966654 5677899999999999877754
No 89
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=90.98 E-value=2 Score=45.80 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=89.3
Q ss_pred eEEEEecccceeeeeeCcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 006707 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (634)
Q Consensus 351 ~~~is~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~ 430 (634)
-+++++||...+..+.. ++.|-..+++.-||..+-=+...+. +...|+++.
T Consensus 158 yllvniGsGvSi~~v~~-----------------~~~~~rvgGs~iGGgT~~GL~~llt------------~~~~~~e~~ 208 (341)
T PF03630_consen 158 YLLVNIGSGVSILKVEG-----------------PNQFERVGGSSIGGGTFWGLCSLLT------------GCKSFDEIL 208 (341)
T ss_dssp EEEEEESSSEEEEEEEE-----------------TTEEEEEEEES-SHHHHHHHHHHHH---------------SHHHHH
T ss_pred EEEEEcCCceEEEEEeC-----------------CCceEEEeccccchHhHHHHHHHhc------------CCCCHHHHH
Confidence 58899998766544322 2334445556666666533333332 235677777
Q ss_pred HHHHhhhhhcCCCCccCCCCcEEEecCCCCCC--CCCCCCCcceeeeCCCCC-------CCHHHHHHHHHHHHHHHHHHH
Q 006707 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICGMTLD-------SSEKQLALLYLATVQGIAYGT 501 (634)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger--~P~~d~~arg~~~Gl~~~-------~~~~~~~~~~rAvlEgia~~~ 501 (634)
+++++=.. .+-. +.+-.+.|.. .+.-.++..++-+|--.. .+++++ .++++--+++.+
T Consensus 209 ~la~~G~~---------~~vD-llV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Di---a~sll~mv~~nI 275 (341)
T PF03630_consen 209 ELAKKGDN---------SNVD-LLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDI---AKSLLNMVSNNI 275 (341)
T ss_dssp HHHHH--G---------GGTS-EEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHH---HHHHHHHHHHHH
T ss_pred HHhcCCCc---------cccC-ceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHH---HHHHHHHHHHHH
Confidence 77754110 0112 2333333332 112334556665554433 245675 459999999988
Q ss_pred HHHHHHHHhCCCCccEEEEecCCCC-CHHHHHHHH---HhhC---CceeccC-CCChhhHHHHHH
Q 006707 502 RHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHA---DIIG---CPIILPR-ENESVLLGAAIL 558 (634)
Q Consensus 502 r~~~~~l~~~g~~~~~I~~~GG~a~-s~~~~Qi~A---dvlg---~pV~~~~-~~ea~alGAA~l 558 (634)
-++.-...+ -..+++|+++|...+ |+..++.++ +-.. .....++ ..-.+|+||.+.
T Consensus 276 g~la~l~A~-~~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 276 GQLAYLHAK-IHGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HHHHHHHHH-HHT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred HHHHHHHHH-HcCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 776543322 234689999999875 577888888 4332 3333333 455899999874
No 90
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=90.67 E-value=1.2 Score=45.93 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCCHHHHHHH-----HHhhCCceeccCC-CChhhHHHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQH-----ADIIGCPIILPRE-NESVLLGAAILG 559 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~-----Advlg~pV~~~~~-~ea~alGAA~lA 559 (634)
+.+++..+..+...+..+.. .......|+++||..+|..+.+-+ ..+...|+.++.. ...+++|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 36777777777776665543 333323399999999997766555 4455667766554 447899999987
No 91
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=90.06 E-value=1.3 Score=47.69 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccE-EEEecCCCCCHHHHHHHHHhhCCc-eeccC--CCChhhHHHHHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGCP-IILPR--ENESVLLGAAIL 558 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~-I~~~GG~a~s~~~~Qi~Advlg~p-V~~~~--~~ea~alGAA~l 558 (634)
..+++.-++..+|-+..++-..+. ++.+ .++ |.++||.+-|-.+++.+++..+.. |+++. .++..++|||+.
T Consensus 135 ~~dlAa~~Q~~~E~~v~~~~~~~~--~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~~ 210 (360)
T PF02543_consen 135 HADLAASAQKVLEEIVLHLVRHLL--ERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAALY 210 (360)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH--HHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHHH
Confidence 468888888999988877654332 2223 345 999999999999999999996654 77765 455899999999
Q ss_pred HHhhcCC
Q 006707 559 GAVAAKR 565 (634)
Q Consensus 559 A~~~~g~ 565 (634)
+.+..+.
T Consensus 211 ~~~~~~~ 217 (360)
T PF02543_consen 211 AWHELGG 217 (360)
T ss_dssp HHHHTT-
T ss_pred HHHHhcC
Confidence 9987765
No 92
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=90.02 E-value=0.54 Score=50.83 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC--CccE-EEEecCCCCCHHHHHHHHHhhCCceeccC
Q 006707 480 DSSEKQLALLYLATVQGIAYGTR-HIVEHCNAHGH--KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPR 546 (634)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r-~~~~~l~~~g~--~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 546 (634)
.-++.++..++++.++-+.-.++ ..+ ++.+. .+.+ |+++||+|+-+.+.+++.+.|+.||.+..
T Consensus 279 ~is~~~l~~ii~~~~~ei~~~i~~~~L---~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~ 346 (371)
T TIGR01174 279 SLSRKELAEIIEARAEEILEIVKQKEL---RKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGL 346 (371)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEEC
Confidence 33456666555666665555554 444 33332 4555 99999999999999999999999998754
No 93
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=89.74 E-value=0.7 Score=49.37 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccC
Q 006707 489 LYLATVQGIAYGTRHIVEHCNA--HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~l~~--~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 546 (634)
.++..++-++-++++.++-+.. .+.++++|+++||+++-+-+.+.+++.||.||++.+
T Consensus 247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 4568899999999999987654 356899999999999999999999999999999754
No 94
>PF13941 MutL: MutL protein
Probab=89.53 E-value=1.2 Score=49.26 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=47.4
Q ss_pred EEEEecCCcccEEEEEc---CCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCC--CCeEEEEecC
Q 006707 57 FLGVDVGTGSARAGLFD---ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDG--EEVKGVGFAA 131 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d---~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~--~~I~aIgis~ 131 (634)
+|.+|+|+|-+|+.+|| .+.++++.++.|+. ++ +.++...+..+++++-++.+... ....-++.|+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-------v~--~~Dv~~G~~~A~~~l~~~~~~~~~~~~~~~la~SS 72 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-------VE--PGDVTIGLNNALEQLEEQTPASPDDGYDKVLACSS 72 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-------cC--cccHHHHHHHHHHHHHHhcCCCcccCceEEEEECC
Confidence 68999999999999999 46788888888775 22 25677788888877777654322 2234444454
Q ss_pred C
Q 006707 132 T 132 (634)
Q Consensus 132 ~ 132 (634)
-
T Consensus 73 A 73 (457)
T PF13941_consen 73 A 73 (457)
T ss_pred C
Confidence 4
No 95
>PLN02914 hexokinase
Probab=89.21 E-value=1.1 Score=50.00 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=46.6
Q ss_pred CCCCcEEEEEecCCcccEEEEEcCCC---cEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 006707 51 ARSRSVFLGVDVGTGSARAGLFDESG---KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (634)
Q Consensus 51 ~m~~~~~LGIDiGTtsiKavl~d~~g---~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~ 118 (634)
.-++..||+||+|.|+.|+++++.+| +++...+..+++- +....-..+++|+.+.+++.+.+++..
T Consensus 91 G~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip--~~l~~gt~~eLFdfIA~~i~~fl~~~~ 159 (490)
T PLN02914 91 GNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIP--QELMFGTSEELFDFIASGLANFVAKEG 159 (490)
T ss_pred CCeeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCC--hhhccCCHHHHHHHHHHHHHHHHHhcc
Confidence 34445799999999999999998655 2455444444321 112234678999999999999998753
No 96
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=89.12 E-value=1 Score=48.16 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-C-CCCccEEEEecCCCCCHHHHHHHHHhhCCceeccC
Q 006707 489 LYLATVQGIAYGTRHIVEHCNA-H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~l~~-~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 546 (634)
.++.++|-++-+++..++.+.. . +..+++|+++||+++-+.+...++..||.||++..
T Consensus 255 ~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~ 314 (348)
T TIGR01175 255 VLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN 314 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence 4568889899888888877643 2 34689999999999999999999999999999754
No 97
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=89.05 E-value=2.3 Score=45.33 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=46.3
Q ss_pred cEEEEEecCCcccEEEEEcC-CC--cEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEec
Q 006707 55 SVFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~-~g--~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis 130 (634)
+.++|||+|++++|++.+.. .+ +++.....+.|.-. ..|. -.|++.+- ++|++++++.+....+ ..+++.
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~~----~~l~~~~~~~~~~~k~-v~~alp 76 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAVA----EALKELLSELGINTKK-AATAVP 76 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHHH----HHHHHHHHHcCCCcce-EEEEec
Confidence 46899999999999999984 33 45555566665432 3443 34666655 4555666665654333 467777
Q ss_pred CCc
Q 006707 131 ATC 133 (634)
Q Consensus 131 ~~~ 133 (634)
+.+
T Consensus 77 ~~~ 79 (348)
T TIGR01175 77 GSA 79 (348)
T ss_pred CCe
Confidence 653
No 98
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=88.99 E-value=1.1 Score=49.91 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHH-HHHHHhhCCceeccC--CCChhhHHHHHHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADIIGCPIILPR--ENESVLLGAAILG 559 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~-Qi~Advlg~pV~~~~--~~ea~alGAA~lA 559 (634)
..+++..+++.+|.+...+-..+..- .+ ..+|...||.+.|-.++ +++...++.-|.++. .+...|+|||+.+
T Consensus 258 ~~diAasaQ~~lE~l~l~~~~~~~~~--~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~ 333 (555)
T COG2192 258 AADIAASAQAYLEELVLEMLRYLREE--TG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAV 333 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hC--ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHH
Confidence 46777788899999988876655432 22 67999999999999999 999999998998865 4457899999999
Q ss_pred HhhcCC
Q 006707 560 AVAAKR 565 (634)
Q Consensus 560 ~~~~g~ 565 (634)
.+-.+.
T Consensus 334 ~~~~~~ 339 (555)
T COG2192 334 KRELGG 339 (555)
T ss_pred HHHhcC
Confidence 876653
No 99
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=88.96 E-value=2.4 Score=46.51 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCC
Q 006707 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 547 (634)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~ 547 (634)
-++..+.++++|-+|-+..-++.-++...........|+++||+++=+-...+-.++|+.||.+...
T Consensus 287 ~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 287 VTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 3456777788888888877776555544332345689999999999999999999999999988544
No 100
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=88.88 E-value=0.84 Score=48.13 Aligned_cols=32 Identities=28% Similarity=0.633 Sum_probs=28.3
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeeccc
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIW 89 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~ 89 (634)
||+|||.-++|++++|.+|++....+.++|.+
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~plW 32 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPLW 32 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCccc
Confidence 69999999999999999999888777777765
No 101
>PRK13317 pantothenate kinase; Provisional
Probab=88.59 E-value=0.49 Score=49.07 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.1
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEE
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSA 82 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~ 82 (634)
.+.+|||+|+|.+|.+++|++++++...
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~~ 29 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFKT 29 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEEe
Confidence 4789999999999999999988776544
No 102
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=88.20 E-value=0.85 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEecCCcccEEEEEcCCCcEEEE
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGS 81 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~ 81 (634)
|.+|||.|++|..++|++++++..
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 579999999999999988776654
No 103
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=88.06 E-value=1.3 Score=44.88 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=33.3
Q ss_pred EEecCCcccEEEEEcCCCcEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHH
Q 006707 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDS 112 (634)
Q Consensus 59 GIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~ 112 (634)
|||+||+++|+++.+.+++.+ +..+.|..+ ..| .-.|.+.....+..+++.
T Consensus 1 g~dig~~~ik~v~~~~~~~~~--~~~~~~~~~~~~g-~I~d~~~~~~~l~~l~~~ 52 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPV--AGVMQFADVVRDG-IVVDFLGAVEIVRRLKDT 52 (239)
T ss_pred CCCcccceEEEEEEecCCCEE--EEEecccccccCC-eEEEhHHHHHHHHHHHHH
Confidence 799999999999999777643 344444433 444 345777766655555533
No 104
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.02 E-value=1.2 Score=46.54 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCCccEEEEecCCCCCHHHHHHHHHhhCCceeccC
Q 006707 489 LYLATVQGIAYGTRHIVEHCNAH--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~l~~~--g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~ 546 (634)
..+-+++.+..++++.++-+-.. ..++++|+++||+++-.-+-+.+.+-++.|+.+..
T Consensus 260 vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~van 319 (354)
T COG4972 260 VLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVAN 319 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeC
Confidence 44578999999999998876542 25789999999999999999999999999999854
No 105
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.61 E-value=1.3 Score=45.91 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecC--CCCCH-HHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcC
Q 006707 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG--LAKNP-LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAK 564 (634)
Q Consensus 490 ~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG--~a~s~-~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g 564 (634)
++|+.|++++.+...+-. + .+..+|+++|. ..+++ .+...+.+.|+.+|.+... +.+|.|+|++|.--+|
T Consensus 242 ~dal~~~vameIasLl~l--~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 242 LDSLAMSVAMEIASLGLL--D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred HHHHHHHHHHHHHhheec--c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHHHHhC
Confidence 479999999887765433 1 23448999997 67888 9999999999999999775 7789999999975443
No 106
>PLN02405 hexokinase
Probab=87.50 E-value=1.6 Score=48.84 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=45.9
Q ss_pred CCCcEEEEEecCCcccEEEEEcCCC---cEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 006707 52 RSRSVFLGVDVGTGSARAGLFDESG---KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (634)
Q Consensus 52 m~~~~~LGIDiGTtsiKavl~d~~g---~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~ 118 (634)
-.+..||+||+|.|+.|++++..+| ..+...+..+++- +....-..+++|+.+.++|.+.+++.+
T Consensus 92 ~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip--~~~~~gt~~~LFdfIA~~i~~fl~~~~ 159 (497)
T PLN02405 92 DEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIP--PHLMTGSSDALFDFIAAALAKFVATEG 159 (497)
T ss_pred CcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecC--hhhccCCHHHHHHHHHHHHHHHHHhcc
Confidence 3445799999999999999999655 2444444444321 122234678899999999999998754
No 107
>PLN02362 hexokinase
Probab=87.47 E-value=1.8 Score=48.61 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=43.7
Q ss_pred CCcEEEEEecCCcccEEEEEcCCCc---EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 006707 53 SRSVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (634)
Q Consensus 53 ~~~~~LGIDiGTtsiKavl~d~~g~---vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~ 118 (634)
.+..||+||+|.|+.|+++++..|+ .+...+..+++ .+....-..+++|+.+.++|.+.+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~l~~~~~~eLFd~IA~~i~~fl~~~~ 159 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPI--PQHLMNSTSEVLFDFIASSLKQFVEKEE 159 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEec--ChhhccCCHHHHHHHHHHHHHHHHHhcC
Confidence 3456899999999999999996652 22222223322 1111234678999999999999998754
No 108
>PLN02596 hexokinase-like
Probab=87.46 E-value=1.5 Score=48.90 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCCcEEEEEecCCcccEEEEEcCCCc---EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 006707 52 RSRSVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (634)
Q Consensus 52 m~~~~~LGIDiGTtsiKavl~d~~g~---vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~ 118 (634)
-.+..||+||+|.|+.|+++++.+|+ +....+..+++ .+....-..+++++.+.++|.+.+++.+
T Consensus 93 ~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 93 DEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISI--PSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred CcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecC--ChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 33456899999999999999996653 23333333332 1112234678899999999999998754
No 109
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=6 Score=41.86 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCCCccEEEEecCCCCCHHHHHHHHHhh---CCceeccC----CCChhhHHHHHHHH
Q 006707 489 LYLATVQGIAYGTRHIVEH-CNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLGAAILGA 560 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~-l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~----~~ea~alGAA~lA~ 560 (634)
+..++-|.++-.+-...+. +.. ...++++++||.+.|..+++++.... |..++.++ .++++.++.|-+..
T Consensus 237 ia~sfQ~av~~~L~~kt~rAl~~--~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaMIA~ag~~~ 314 (342)
T COG0533 237 IAASFQEAVFDMLVEKTERALKH--TGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAMIAYAGLLR 314 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHHHHHHHHHH
Confidence 3346666555555444433 233 45678999999999999999998876 44576655 23344444443334
Q ss_pred hhcCC
Q 006707 561 VAAKR 565 (634)
Q Consensus 561 ~~~g~ 565 (634)
+..|.
T Consensus 315 ~~~g~ 319 (342)
T COG0533 315 YKAGR 319 (342)
T ss_pred HHcCC
Confidence 44443
No 110
>PTZ00288 glucokinase 1; Provisional
Probab=86.93 E-value=4 Score=44.64 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=46.4
Q ss_pred CCcEEEEEecCCcccEEEEEcC---CCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCeEEEE
Q 006707 53 SRSVFLGVDVGTGSARAGLFDE---SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVG 128 (634)
Q Consensus 53 ~~~~~LGIDiGTtsiKavl~d~---~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~-~~~~~I~aIg 128 (634)
+..|++|+|||.|++|..+++. ++..+...+.+++. --+|..+..+.+.+.+.++.+... +....-.+|+
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~iA 97 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV------TKTDIRELLEFFDEVLQKLKKNLSFIQRVAAGAIS 97 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc------ccccHHHHHHHHHHHHHHHHhcCccccCcCeEEEE
Confidence 4578999999999999999985 33344444555541 124677777888788766655321 1222344666
Q ss_pred ecC
Q 006707 129 FAA 131 (634)
Q Consensus 129 is~ 131 (634)
+.+
T Consensus 98 vAG 100 (405)
T PTZ00288 98 VPG 100 (405)
T ss_pred EeC
Confidence 655
No 111
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=86.86 E-value=0.56 Score=49.72 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-C--CCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCC-hhhHHHHHH
Q 006707 484 KQLALLYLATVQGIAYGTRHIVEHCNA-H--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL 558 (634)
Q Consensus 484 ~~~~~~~rAvlEgia~~~r~~~~~l~~-~--g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-a~alGAA~l 558 (634)
.++...++-.++.+.-.++.+++.+.. . .+-.+-|+++||+|.=+-+-+.+++-++.||.+.+.++ +.+.|+..+
T Consensus 240 ~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 240 SEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKL 318 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHH
Confidence 344333334444444444444443211 0 11124599999999999999999999999999988665 788888764
No 112
>PRK09604 UGMP family protein; Validated
Probab=86.82 E-value=2 Score=45.80 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=52.8
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeee-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~-~~~~-~~g~~-eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
.+||||-.+.-+-++++|.+++++....... .... ..|.+ +.....=-+.+...+++++++.++++.+|.+|+++..
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~G 81 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAG 81 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 4899999888888999987778887655332 1122 22321 1222333456677788888888888999999999865
No 113
>PLN02902 pantothenate kinase
Probab=86.68 E-value=18 Score=43.02 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=95.8
Q ss_pred eEEEEecccceeeeeeCcccccCcccccccccccCCeeEecccccchhhHHHHHHHhhhhhhHHHHHHhhccCCHHHHHH
Q 006707 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (634)
Q Consensus 351 ~~~is~GTs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~a~~~~~~~~~~l~ 430 (634)
-+++++||...+..+.. ++.|--.+++.-||..+-=+...+. +...|+++-
T Consensus 216 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sFdEll 266 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTNVGGGTYWGLGRLLT------------KCKSFDELL 266 (876)
T ss_pred eEEEEcCCceEEEEEec-----------------CCcEEEecccccccHhHHHHHHHHc------------CCCCHHHHH
Confidence 58899999876554432 1234444555555555522333321 356778887
Q ss_pred HHHHhhhhhcCCCCccCCCC-cE-EEecCCCCCC---CCCCCCCcceeeeCC--C-----CCCCHHHHHHHHHHHHHHHH
Q 006707 431 GTLESMIHERNSPFVAALTE-DI-HVLPDFHGNR---SPIADPKSKGIICGM--T-----LDSSEKQLALLYLATVQGIA 498 (634)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~-gl-~flP~l~Ger---~P~~d~~arg~~~Gl--~-----~~~~~~~~~~~~rAvlEgia 498 (634)
+++.+ |.+ .+ +.+-.+.|.. .+--..++.++-+|- . .+.++++++ |+++--|+
T Consensus 267 ~LA~~------------Gd~~~vDllVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDia---rSLL~mIs 331 (876)
T PLN02902 267 ELSQR------------GDNSAIDMLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDIS---LSLLRMIS 331 (876)
T ss_pred HHHhc------------CCccccCeeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHH---HHHHHHHH
Confidence 77754 322 12 3344555421 122344555665662 1 123467854 59999999
Q ss_pred HHHHHHHHHHHhCCCCccEEEEecCCCC-CHHHHHHHHHhhC------CceeccC-CCChhhHHHHHHH
Q 006707 499 YGTRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHADIIG------CPIILPR-ENESVLLGAAILG 559 (634)
Q Consensus 499 ~~~r~~~~~l~~~g~~~~~I~~~GG~a~-s~~~~Qi~Advlg------~pV~~~~-~~ea~alGAA~lA 559 (634)
+++-++.-.. .....+++|++.|..-+ ++.-++.++-.++ +....+. ..-.+|+||.+..
T Consensus 332 ~NIGqiA~L~-A~~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~ 399 (876)
T PLN02902 332 YNIGQISYLN-ALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSY 399 (876)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcC
Confidence 9988765433 22356789999999764 6778888887764 3333333 3447899998644
No 114
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=86.31 E-value=2.2 Score=45.60 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred EEecCCcccEEEEEcCCC---cEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCc
Q 006707 59 GVDVGTGSARAGLFDESG---KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (634)
Q Consensus 59 GIDiGTtsiKavl~d~~g---~vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~ 133 (634)
|||||+.++|++-++..+ ++...+..++|.-. .+| .-.|++.+-+ .|++++++.+.. .+-+.+++.+.+
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~----~L~~~~~~~~~~-~k~v~~aip~~~ 73 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAE----ALKELLKENKIK-GKKVVLAIPGSS 73 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHH----HHHHHHHHHT-----EEEEEE-GGG
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHH----HHHHHHHHcCCC-CCeEEEEeCCCc
Confidence 899999999999999654 35566677776432 333 2357766654 455555655553 344557776654
No 115
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.05 E-value=2.2 Score=48.56 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=45.6
Q ss_pred CCCccEEEEecCCCCCHHHHHHHHHhhCCceec--cCCCChhhHHHHHHHHhhcCCC
Q 006707 512 GHKIDTLLACGGLAKNPLFLQQHADIIGCPIIL--PRENESVLLGAAILGAVAAKRY 566 (634)
Q Consensus 512 g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~--~~~~ea~alGAA~lA~~~~g~~ 566 (634)
...+..|+++||.++-|.+.+++.|.|+..-.. ....|+.|+|||+.|+.-.|..
T Consensus 332 k~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~ 388 (620)
T KOG0101|consen 332 KSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDK 388 (620)
T ss_pred ccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCc
Confidence 456899999999999999999999999863322 2357899999999999877754
No 116
>PRK14878 UGMP family protein; Provisional
Probab=85.80 E-value=2.7 Score=44.63 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=49.4
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~e-qdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
||||-.+.-+-++|+| ++++++.....+. ....|... .-...-.+.+...+++++++.+++..+|.+|+++..
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~~-~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~g 74 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTYV-PEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQG 74 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEecc-cCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 5889888888889998 4557776655441 11334332 122233445667888888888888999999999865
No 117
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=85.40 E-value=2.7 Score=40.95 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCC-hhhHHHHHH
Q 006707 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL 558 (634)
Q Consensus 490 ~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~e-a~alGAA~l 558 (634)
++-++|-+|--.+.+++ +..++.++++||.+.-+..-.++-.-|+++|+.|..+. .+.||.|+-
T Consensus 207 v~PV~eKMAeIv~~hie-----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 207 VKPVYEKMAEIVARHIE-----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred hhHHHHHHHHHHHHHhc-----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhc
Confidence 34677777776666665 45678999999999888888999999999999988544 688888864
No 118
>PRK03011 butyrate kinase; Provisional
Probab=85.36 E-value=2.5 Score=45.56 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccEEEEecCCCCCHHHHHHHHHhhC--CceeccC-CC--ChhhHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR-EN--ESVLLGAAI 557 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~-g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~-~~--ea~alGAA~ 557 (634)
+.++|..++.+...+-.+... +..++.|+++||.+.++.+++.+-+.+. .||.+.. .. ++.++||+.
T Consensus 271 ~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 271 KLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 478888888888877766543 3468999999999988888876666554 3676644 22 366777653
No 119
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=84.56 E-value=1.9 Score=50.57 Aligned_cols=69 Identities=22% Similarity=0.312 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhC---CceeccC----CCChhhHHHHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---CPIILPR----ENESVLLGAAILGA 560 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg---~pV~~~~----~~ea~alGAA~lA~ 560 (634)
+++.+.++-.+...++.+.+. ...++|+++||.++|..+++.+.+.++ ..|+.+. .+.+.++|.|+.|+
T Consensus 636 a~fh~tla~~L~~~a~~~~~~-~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 636 HIAHKFVASGLVEIATAIAVP-FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 466666666666666555332 346789999999999999999988875 6776543 45678899988764
No 120
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=84.19 E-value=3 Score=44.18 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHh----hCCceeccCC----CChhhHHHHHHHH-
Q 006707 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADI----IGCPIILPRE----NESVLLGAAILGA- 560 (634)
Q Consensus 490 ~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Adv----lg~pV~~~~~----~ea~alGAA~lA~- 560 (634)
+.|.+|+++-.+...+.. -.+++.|+++|-.++++.+..-+.+. ++.+|..... ...+|.|+|++|-
T Consensus 240 ~ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 240 WEAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence 568999888877644332 23567899999999998876555544 5556655433 2348999999996
Q ss_pred hhcCCCCCH
Q 006707 561 VAAKRYSSL 569 (634)
Q Consensus 561 ~~~g~~~~~ 569 (634)
.+-|.|+.+
T Consensus 316 laGG~~~~l 324 (343)
T PF07318_consen 316 LAGGRYKEL 324 (343)
T ss_pred hhcccHHHH
Confidence 555666544
No 121
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=84.09 E-value=4.7 Score=43.06 Aligned_cols=78 Identities=13% Similarity=0.231 Sum_probs=55.9
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCC-Cccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCc
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~-g~~e-qdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~ 133 (634)
.+||||-.+.-+-++|+|.+|+++........ .+.+ |-+. .....=.+.+...+++++++.++...+|.+|++|...
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~-~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GP 80 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI-TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGP 80 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeecc-ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 48999999999999999987888876654432 1112 4332 2223335567778888888888889999999998763
Q ss_pred e
Q 006707 134 S 134 (634)
Q Consensus 134 ~ 134 (634)
|
T Consensus 81 G 81 (345)
T PTZ00340 81 G 81 (345)
T ss_pred C
Confidence 3
No 122
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.68 E-value=3.2 Score=41.65 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=41.5
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
..++|||-|||++|.+++|.++.+...-.+ .| .... +=...|+++-.+.++..++|..|+++.
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~~Fklgr----------ae--~~~~--~ek~~L~~l~de~~i~l~eidlialtY 65 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDPEFKLGR----------AE--LRKV--AEKSLLRELEDEARIALEEIDLIALTY 65 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCceEEech----------hh--hhhh--hHHHHHHHhhHhhCCccccceEEEEee
Confidence 468999999999999999977755432111 11 1111 012455555556677788999999985
No 123
>PTZ00107 hexokinase; Provisional
Probab=83.51 E-value=5.3 Score=44.53 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=43.9
Q ss_pred CCcEEEEEecCCcccEEEEEcCCCc-EEEEEEeee--ccccCCC---c--cccCHHHHHHHHHHHHHHHHHHcC
Q 006707 53 SRSVFLGVDVGTGSARAGLFDESGK-LLGSASSPI--QIWKEGD---C--IEQSSTDIWHAICAAVDSACSLAN 118 (634)
Q Consensus 53 ~~~~~LGIDiGTtsiKavl~d~~g~-vl~~~~~~~--~~~~~~g---~--~eqdp~~~~~a~~~~l~~~l~~~~ 118 (634)
.+..||+||+|.|++|+++++..|. .....+..+ |.....| . -+...+++|+.+.+++.+.+++.+
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~ 145 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENG 145 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 3446899999999999999996553 332233233 3221111 1 122678999999999999998754
No 124
>PLN02666 5-oxoprolinase
Probab=82.70 E-value=2.3 Score=53.00 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=53.7
Q ss_pred CcEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHH-HHHHHHHHHHHHHH-----HHcCCCCCCeEEE
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSST-DIWHAICAAVDSAC-----SLANVDGEEVKGV 127 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~-~~~~a~~~~l~~~l-----~~~~~~~~~I~aI 127 (634)
..|.+|||+|.|-+-++++|.++.-+...+.+.. . ..|+. -+.+.+..++++++ ...++++.+|..|
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~st---t----p~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v 80 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSV---D----PANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI 80 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCC---C----CCChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence 3589999999999999999987654444455431 0 12343 35555555554443 2235556788888
Q ss_pred EecCC-ceeEEEcCCCCce
Q 006707 128 GFAAT-CSLVAVDADGSPV 145 (634)
Q Consensus 128 gis~~-~~~V~~d~~G~pl 145 (634)
..+++ .+-.++..+|.++
T Consensus 81 ~hGTT~atNAllerkGa~v 99 (1275)
T PLN02666 81 RMGTTVATNALLERKGERI 99 (1275)
T ss_pred EEechHHHHHHHhccCCcE
Confidence 88876 5555666666554
No 125
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=82.65 E-value=1.8 Score=44.30 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCCcEEEEEecCCcccEEEEEcCCCcEEEEEEee
Q 006707 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSP 85 (634)
Q Consensus 52 m~~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~ 85 (634)
|+..+++.||=|||+.|+-+++.||+++.+.+-.
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~ 35 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRSE 35 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence 5557899999999999999999999988876543
No 126
>PRK13324 pantothenate kinase; Reviewed
Probab=82.33 E-value=4.1 Score=41.80 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=38.8
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~ 131 (634)
+|.||+|-|++|..++|. ++++...+.++. ......+++. ..++.++++.+.+..+|..|.+|+
T Consensus 2 iL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~------~~~~t~de~~----~~l~~~~~~~~~~~~~i~~viisS 65 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG-DRIVSQIRYATS------SVDSTSDQMG----VFLRQALRENSVDLGKIDGCGISS 65 (258)
T ss_pred EEEEEeCCCceEEEEEEC-CEEEEEEEEecC------ccccchHHHH----HHHHHHHHhcCCCccCCCeEEEEe
Confidence 689999999999999993 345544333321 0122334443 445566666555566677776653
No 127
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=82.33 E-value=3.3 Score=43.77 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=51.6
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeee-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~-~~~~-~~g~~-eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
+|+||-.|..+-++|+|.+++++....... .... ..|-. +.....=-+.+...+++++++.+++..+|.+|+++..
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~G 79 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAG 79 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 489999999999999986555776655432 1111 22321 2223334456667788888888888899999999875
No 128
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=82.33 E-value=3.2 Score=45.68 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC---CccEEEEecCCCCCHHHHHHHHHhhC----CceeccCCCChhhHHHHHHHHhhcC
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG----CPIILPRENESVLLGAAILGAVAAK 564 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~---~~~~I~~~GG~a~s~~~~Qi~Advlg----~pV~~~~~~ea~alGAA~lA~~~~g 564 (634)
++.-+++--..-++-.+.+.|+ +++++++.|-.-. .+.--.|.++| .+-++.+.. -++++-|..|...-+
T Consensus 468 e~~kAkgAirAG~~tL~~kaGie~eDie~~ymAGAfGt--yid~~~A~~iGliPd~~~kV~q~G-NtslagAr~aLlse~ 544 (614)
T COG3894 468 EAGKAKGAIRAGHMTLIEKAGIELEDIERIYMAGAFGT--YIDAKKAMVIGLIPDCDLKVKQIG-NTSLAGAREALLSEG 544 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhhheeecccccc--ccchhHhheeeccCCcchhhhhhc-cchHHHHHHHHhchh
Confidence 4555454333334444556675 4667899985321 22233455555 233333222 356777777777777
Q ss_pred CCCCHHHHHHHhhhcCcEEee
Q 006707 565 RYSSLIEAMKAMNAAGQVCMT 585 (634)
Q Consensus 565 ~~~~~~e~~~~~~~~~~~~~P 585 (634)
.-..+++.++++..+....+|
T Consensus 545 rr~Eie~ia~~I~~i~~At~~ 565 (614)
T COG3894 545 RRDEIEDIASKIEYIMLATEE 565 (614)
T ss_pred hHHHHHHHHHHHHHHHhhccH
Confidence 777788888887775544443
No 129
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=82.27 E-value=5.2 Score=41.43 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.8
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEE
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSA 82 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~ 82 (634)
.+|||+|+|-+|.+.+|++++++...
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~ 27 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKT 27 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEE
Confidence 58999999999999999999887543
No 130
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=81.81 E-value=5.8 Score=42.41 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh---CCceeccC
Q 006707 489 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR 546 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~ 546 (634)
+.+++.|.++-.+...++..-+. ...++|+++||.+.|..+++.+.+.. +.+++.++
T Consensus 239 iaasfq~~v~~~L~~k~~~a~~~-~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~ 298 (345)
T PTZ00340 239 LCFSLQETIFAMLVEVTERAMSH-CGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMD 298 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCC
Confidence 33477777777666655443221 34688999999999999999999886 78888866
No 131
>PRK00976 hypothetical protein; Provisional
Probab=80.93 E-value=7.2 Score=41.17 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCH--HHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcC
Q 006707 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP--LFLQQHADIIGCPIILPRENESVLLGAAILGAVAAK 564 (634)
Q Consensus 490 ~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~--~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g 564 (634)
++...+.++..+...+-. .+++.|++.||.++.+ .+.+.+.+.+..++... ..+++++|||++|..-++
T Consensus 244 id~~~~~LA~~IAnLi~l-----lDPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~L-G~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 244 IDTLALFVAMEIASLLLL-----NPEDNVVLAGSVGEMDEPDVSERIKELLDKKVLVL-GKESAAIGLALIARDIFN 314 (326)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCCEEEEcCccccCchhHHHHHHHHHhccccccc-CCchHHHHHHHHHHHHhC
Confidence 345555555555544433 3578899999988876 55666666665553332 468999999999976443
No 132
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.45 E-value=2.8 Score=48.82 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=47.9
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-c
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~ 133 (634)
.+.+|||+|.|.+-++++|+++.++...+.... |+.........++.+..... ..+|..+.++++ .
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt-----------P~~~~~~~~~~~~~~~~~~~--~~~i~~v~~gTT~a 68 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-----------PDLPSGIVNAGIRLALELLE--GSEVDLVVHGTTLA 68 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC-----------CCchhhHHHHHHHHHhhccc--cccccEEEEeccHH
Confidence 478999999999999999987767777666542 33333444444433333211 146777777765 4
Q ss_pred eeEEEcCCCC
Q 006707 134 SLVAVDADGS 143 (634)
Q Consensus 134 ~~V~~d~~G~ 143 (634)
+-.++.+.|.
T Consensus 69 TNallerkG~ 78 (674)
T COG0145 69 TNALLERKGL 78 (674)
T ss_pred HHHHHhccCc
Confidence 4445555555
No 133
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=78.92 E-value=2.7 Score=44.45 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=40.9
Q ss_pred EEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCc
Q 006707 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (634)
Q Consensus 59 GIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~ 133 (634)
|||=||+|...+.+|++|+++...+.|... +..+|..+.+.+. +. .++..|+..+-+
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~~------v~~~p~~iv~~l~----~~--------~~~dlIa~psGy 57 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTEE------VAKNPSIIVEELE----EF--------GDIDLIAGPSGY 57 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHHH------hhhCHHHHHHHHH----hc--------cCCCEEEeCCcC
Confidence 799999999999999999999888777653 4567766553322 21 356677776543
No 134
>PRK10854 exopolyphosphatase; Provisional
Probab=78.83 E-value=8.1 Score=43.78 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=40.6
Q ss_pred EEEEEecCCcccEEEEEcC-CC--cEEEEEEeeecccc---CCCccccCHHHHHHHHHHHHH---HHHHHcCCCCCCeEE
Q 006707 56 VFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVD---SACSLANVDGEEVKG 126 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~-~g--~vl~~~~~~~~~~~---~~g~~eqdp~~~~~a~~~~l~---~~l~~~~~~~~~I~a 126 (634)
.+.+||+||.|+|.++++. +| +++.+.+.....-. ..|. .+++.+- .++++|+ ++++..+ ..+|.+
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~--Ls~e~~~-r~~~~L~~F~~~~~~~~--v~~v~~ 86 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNM--LSEEAME-RGLNCLSLFAERLQGFS--PANVCI 86 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCC--cCHHHHH-HHHHHHHHHHHHHHhCC--CCeEEE
Confidence 6899999999999999994 44 44444444443211 2232 3333332 2334443 4455444 357777
Q ss_pred EEecC
Q 006707 127 VGFAA 131 (634)
Q Consensus 127 Igis~ 131 (634)
++-++
T Consensus 87 vATsA 91 (513)
T PRK10854 87 VGTHT 91 (513)
T ss_pred EehHH
Confidence 77655
No 135
>PTZ00297 pantothenate kinase; Provisional
Probab=78.75 E-value=48 Score=42.45 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecC-CCCCHHHHHHHHHhhC------CceeccC-CCChhhHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG------CPIILPR-ENESVLLG 554 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG-~a~s~~~~Qi~Advlg------~pV~~~~-~~ea~alG 554 (634)
++|+ .|+++-.|.+++-++.- |......+++|+..|+ ...|+..++.++..++ +..+.++ ..-.+|+|
T Consensus 1364 ~~Di---~~sll~~is~nIgqia~-l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~G 1439 (1452)
T PTZ00297 1364 AIDI---VRSLLNMISSNVTQLAY-LHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALG 1439 (1452)
T ss_pred HHHH---HHHHHHHHHHHHHHHHH-HHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhh
Confidence 5674 45999999998877653 3333456899999999 5679999999999874 3333334 44579999
Q ss_pred HHHH
Q 006707 555 AAIL 558 (634)
Q Consensus 555 AA~l 558 (634)
|++.
T Consensus 1440 a~~~ 1443 (1452)
T PTZ00297 1440 CATL 1443 (1452)
T ss_pred hhhc
Confidence 9985
No 136
>PRK13331 pantothenate kinase; Reviewed
Probab=78.50 E-value=6.1 Score=40.30 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCc-------eeccCCCChhhHHHHHHHH
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCP-------IILPRENESVLLGAAILGA 560 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~p-------V~~~~~~ea~alGAA~lA~ 560 (634)
.++-|.+..++.+++.+++.-. .-+|+++||.+ +++++.+..+ ..+ .++-+..|-.+++-
T Consensus 182 Gi~~g~~g~i~~~i~~~~~~~~-~~~vi~TGG~a------~~l~~~~~~~~~~~~~~~~~--~~~LvL~GL~~i~~ 248 (251)
T PRK13331 182 GVIYTILAGLRDFIEDWLSLFP-DGKIVLTGGDG------ELLHNYLQDLDPELAQRLRV--DPNLIFWGIAAIRQ 248 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCCH------HHHHHHhhccccccccccEE--CcchHHHHHHHHHh
Confidence 6666666666666666654322 34799999976 4555555543 333 35677888777653
No 137
>PRK09604 UGMP family protein; Validated
Probab=77.77 E-value=8.4 Score=41.07 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh---CCceeccCC----CChhhHHH
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE----NESVLLGA 555 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~----~ea~alGA 555 (634)
+.++++ ++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+ |..|+++.. +.+.++|+
T Consensus 227 ~~~iA~---s~q~~l~~~l~~~~~~~~~~-~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ 302 (332)
T PRK09604 227 KADIAA---SFQAAVVDVLVIKTKRALKQ-TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAA 302 (332)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHH
Confidence 345443 66666666665555554332 34678999999999999999999998 788887553 44667777
Q ss_pred HHHHHhhcCCC
Q 006707 556 AILGAVAAKRY 566 (634)
Q Consensus 556 A~lA~~~~g~~ 566 (634)
|-+-..-.|..
T Consensus 303 ag~~~~~~g~~ 313 (332)
T PRK09604 303 AGYERLKAGEF 313 (332)
T ss_pred HHHHHHHcCCC
Confidence 75555555543
No 138
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=77.66 E-value=6 Score=45.63 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=43.1
Q ss_pred CccEEEEecCCCCCHHHHHHHHHhhCCc-ee-ccCCCChhhHHHHHHHHhhcCCC
Q 006707 514 KIDTLLACGGLAKNPLFLQQHADIIGCP-II-LPRENESVLLGAAILGAVAAKRY 566 (634)
Q Consensus 514 ~~~~I~~~GG~a~s~~~~Qi~Advlg~p-V~-~~~~~ea~alGAA~lA~~~~g~~ 566 (634)
.++.|++.||++|-|.+..++.+..+.. +- -...+|++++||++.|+.-..-|
T Consensus 364 eIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 364 EINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred hhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 6889999999999999999999888743 22 24578999999999998765544
No 139
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=77.23 E-value=8.3 Score=43.87 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=53.8
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~-eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
++||||-.+.-+-++|++.+|++++.....+. .+.+|-+ +.....=.+.+...+++++++.+++..+|.+|+++..
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~g 78 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYK-PPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQG 78 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEeecc-CCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCC
Confidence 58999999999999999976788887764421 1122322 1111223456667888888888888899999999865
No 140
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=76.67 E-value=8.1 Score=43.96 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=11.4
Q ss_pred hhHHHHhCCCCCCCChHHHHHHHHH
Q 006707 177 SPVLQYCGGAVSPEMQPPKLLWVKE 201 (634)
Q Consensus 177 ~~~~~~tG~~~~~~~~~~kl~wl~~ 201 (634)
+.+.+..|... ++ .+++.-+..
T Consensus 161 D~va~~Lg~~~-~g--~~~le~lA~ 182 (535)
T PRK09605 161 DKFARHVGLPH-PG--GPKIEKLAK 182 (535)
T ss_pred HHHHHHhCCCC-CC--CHHHHHHHh
Confidence 44555667654 22 556655544
No 141
>PRK13326 pantothenate kinase; Reviewed
Probab=76.52 E-value=7.7 Score=39.87 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHH
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL 558 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~l 558 (634)
.++-|.+..+..+++.+++.-...-.|+++||.+ ++++..+..+..+ .++-+..|-+++
T Consensus 194 Gi~~g~~~~I~g~i~~~~~e~~~~~~vv~TGG~a------~~l~~~~~~~~~~--~~~LvL~GL~~i 252 (262)
T PRK13326 194 GVIYQYKYLIEGVYHDLKRNYDREFNLIITGGNS------NLILPLISVDFIF--NLYLTLEGIRIL 252 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCH------HHHHhhCCCCcEE--CcccHHHHHHHH
Confidence 6666677777777777764322234799999976 4667777777666 356677777655
No 142
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=76.17 E-value=6.2 Score=40.47 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCCHHHHHHHHHhhC--CceeccC-CCC
Q 006707 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR-ENE 549 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~s~~~~Qi~Advlg--~pV~~~~-~~e 549 (634)
+-++|+++|++..-+-.+.. ...+++-|+++||.+++..++..+.+-.. .||.+.. +.|
T Consensus 272 ~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~E 334 (358)
T COG3426 272 KLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDE 334 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchH
Confidence 36788899998877766654 46789999999999999999999999876 7887754 444
No 143
>PRK12440 acetate kinase; Reviewed
Probab=75.21 E-value=14 Score=40.06 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCCHH-HHHHHHHhhC
Q 006707 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADIIG 539 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~s~~-~~Qi~Advlg 539 (634)
-++|..+|+++..+-.+-. .+ .++-|+++||...|.. +++.+.+-++
T Consensus 298 lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 298 LAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 5788899999888776654 45 7899999999987655 6666655544
No 144
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=75.09 E-value=7.6 Score=41.18 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=50.4
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~-eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
||||-.+.-+-++|++.++++++.....+. ....|.. +.....=-+.+...+++++++.++++.+|.+|+++..
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~g 75 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYV-PEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQG 75 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeecc-cCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 689988888889999877888876655442 1123332 1122222344666788888888888999999999865
No 145
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=74.76 E-value=8.2 Score=40.59 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=53.9
Q ss_pred EEEecCCcccEEEEEcCCCcEEEEEEeeecc-cc-CCCc-cccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCc
Q 006707 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQI-WK-EGDC-IEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~-~~-~~g~-~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~ 133 (634)
||||-.+.-+-++++|.+++++......... +. ..|- .+.....=-+.+...+++++++.+++..+|.+|+++...
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GP 79 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGP 79 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 6899999999999998668888876655432 11 2232 222333445566778888888888899999999998753
No 146
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.94 E-value=3.5 Score=45.78 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=51.0
Q ss_pred HHHHHHhCC---CCccEEEEecCCCCCHHHHHHHHHhhCC-ceeccCCCChhhHHHHHHHHhhcCCCC
Q 006707 504 IVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAILGAVAAKRYS 567 (634)
Q Consensus 504 ~~~~l~~~g---~~~~~I~~~GG~a~s~~~~Qi~Advlg~-pV~~~~~~ea~alGAA~lA~~~~g~~~ 567 (634)
+-..|+..+ -++++|+++||++|=+-....+.++||. |=.-....|+.|+|||+.+++-.|..+
T Consensus 340 ~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVk 407 (640)
T KOG0102|consen 340 CKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVK 407 (640)
T ss_pred HHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcccc
Confidence 444555443 3689999999999999999999999996 555566789999999999888777554
No 147
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=73.32 E-value=8.9 Score=41.73 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCC-CCccEEEEecCC-CCCHHHHHHHH----HhhC---Cce
Q 006707 477 MTLDSSEKQLALLYLATVQGIAYGTRHIVEH-----CNAHG-HKIDTLLACGGL-AKNPLFLQQHA----DIIG---CPI 542 (634)
Q Consensus 477 l~~~~~~~~~~~~~rAvlEgia~~~r~~~~~-----l~~~g-~~~~~I~~~GG~-a~s~~~~Qi~A----dvlg---~pV 542 (634)
+...++.++.. +++.++|.+.=.-..+... +.+.| .+.-.|...|-. .+++.+..+++ +.++ -++
T Consensus 361 ~~~~tt~eer~-lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~~i 439 (466)
T COG5026 361 FRAPTTKEERK-LIRRLVELIGRRAARLAAVPIAAIVIKTGAYKAYHVGADGSVIERYPGFRSMLREALKALLGEEGEKI 439 (466)
T ss_pred hcCCCCHHHHH-HHHHHHHHHHHhhHHHHhhhHHHhhhhcCCCccceeeeecchhhhchhHHHHHHHHHHHhhcccCcee
Confidence 44555555544 6778888876554443322 23345 455567777764 46665554443 4444 455
Q ss_pred eccCCCChhhHHHHHHHHhhc
Q 006707 543 ILPRENESVLLGAAILGAVAA 563 (634)
Q Consensus 543 ~~~~~~ea~alGAA~lA~~~~ 563 (634)
.+....+++.+|||++|+.+.
T Consensus 440 ~i~~a~dgsglGAAl~a~~~~ 460 (466)
T COG5026 440 KIKPAEDGSGLGAALCALLAQ 460 (466)
T ss_pred eEEecccCcchHHHHHHHHhc
Confidence 555567889999999998764
No 148
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=71.75 E-value=7.4 Score=34.79 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=27.9
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCC---ccccCHHHHHHHHHHHHHHH
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD---CIEQSSTDIWHAICAAVDSA 113 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g---~~eqdp~~~~~a~~~~l~~~ 113 (634)
+++||+|++.++++++..+ ........++-..+..| ..-.|.+++-+++..++.++
T Consensus 1 i~~iDiGs~~~~~~i~~~~-~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-SDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-EEEEEEEES----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEeC-CCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 5789999999999999853 22333333433222222 12346677766776666554
No 149
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=70.46 E-value=12 Score=39.24 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEecCCcccEEEEEcC-CC--cEEEEEEeee
Q 006707 57 FLGVDVGTGSARAGLFDE-SG--KLLGSASSPI 86 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~-~g--~vl~~~~~~~ 86 (634)
+.+||+||.++|..+++. ++ +++...+.+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~v 34 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMV 34 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeee
Confidence 578999999999999995 33 3444444444
No 150
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=70.20 E-value=13 Score=39.35 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHh---hCCceeccCC
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADI---IGCPIILPRE 547 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Adv---lg~pV~~~~~ 547 (634)
+.+++ +++.+.++-.+.+..+...+. ...++|.++||.+.|..+++.+.+. .|.+|+++..
T Consensus 215 ~~diA---asfq~~l~~~l~~~a~~~~~~-~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 215 LEDVC---YSLQETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 34544 466666666666666655432 2467899999999999999999995 4778887553
No 151
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=69.41 E-value=13 Score=37.73 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCC
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK 526 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~ 526 (634)
.++.|.+..+..+++++++.-...-.|+++||.++
T Consensus 184 G~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~ 218 (243)
T TIGR00671 184 GAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGK 218 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchH
Confidence 66677777777777766543222347999999875
No 152
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=68.14 E-value=12 Score=41.25 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=41.6
Q ss_pred EecCCcccEEEEEc-CCCcEEEEEEeeeccccCCCccccCHHHHHHH-HHHHHHHHHHHcCCCC---CCeEEEEecCC
Q 006707 60 VDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA-ICAAVDSACSLANVDG---EEVKGVGFAAT 132 (634)
Q Consensus 60 IDiGTtsiKavl~d-~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a-~~~~l~~~l~~~~~~~---~~I~aIgis~~ 132 (634)
+|+|+|-+|+.+|| ++++++..++...|.. + +++... +..++.++.++.+... ..+.-+++|+-
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt------~---~dv~~G~~~~a~~~l~~~~~~~~~~~~~~~~~acSSA 69 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIE------S---DHLAGGFFNKANEKLNEDLAGKELNSGEVAKKACSSA 69 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccc------h---hhhhcchHHHHHHHHHHhcCCcccccccceEEEEccc
Confidence 69999999999999 5577888777766531 1 255445 5666666666654331 33455666654
No 153
>PRK13320 pantothenate kinase; Reviewed
Probab=67.78 E-value=18 Score=36.79 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHH
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 559 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA 559 (634)
.++-|.+..+..+++++++.-. .-.|+++||.+ +++++.+..++.+ .++-...|-..+.
T Consensus 182 G~~~~~~~~i~~~i~~~~~~~~-~~~vi~TGG~a------~~l~~~l~~~~~~--~p~Lvl~GL~~~~ 240 (244)
T PRK13320 182 GVVWGCVAEIEGLIEAYKSKLP-ELLVILTGGDA------PFLASRLKNTIFA--DEHAVLKGLNRIL 240 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCCH------HHHHHhcCCccEE--CcchHHHHHHHHH
Confidence 5555555555566666654322 24799999987 4567777777765 3566777766553
No 154
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=67.34 E-value=19 Score=40.70 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=41.6
Q ss_pred CcEEEEEecCCcccEEEEEcC-CCc--EEEEEEeeeccc---cCCCccccCHHHHHHHHHHHHH---HHHHHcCCCCCCe
Q 006707 54 RSVFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIW---KEGDCIEQSSTDIWHAICAAVD---SACSLANVDGEEV 124 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~-~g~--vl~~~~~~~~~~---~~~g~~eqdp~~~~~a~~~~l~---~~l~~~~~~~~~I 124 (634)
.+++..||+||.|+|.++++. ++. ++...+.....- ...|. .+++.+ +.++++|+ ++++..+ ..+|
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~--Ls~e~i-~r~~~~L~~F~~~~~~~~--v~~i 79 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNA--LSNEAM-ERGWQCLRLFAERLQDIP--PSQI 79 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCC--cCHHHH-HHHHHHHHHHHHHHHhCC--CCeE
Confidence 367899999999999999994 453 344444443331 12332 233333 22334444 4444444 3577
Q ss_pred EEEEecC
Q 006707 125 KGVGFAA 131 (634)
Q Consensus 125 ~aIgis~ 131 (634)
.+++-++
T Consensus 80 ~~vATsA 86 (496)
T PRK11031 80 RVVATAT 86 (496)
T ss_pred EEEEeHH
Confidence 7777665
No 155
>PRK03011 butyrate kinase; Provisional
Probab=66.34 E-value=27 Score=37.68 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=43.8
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~---~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgi 129 (634)
.+|.|.-|+||+|.++|+ +.+.+.+....++... -+...+| .++. .+.+.+.+++.+++.+++.+|+-
T Consensus 3 ~il~inpgststk~a~~~-~~~~~~~~~~~h~~~~~~~~~~~~~q--~~~r---~~~i~~~l~~~g~~~~~l~av~~ 73 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE-DEKPIFEETLRHSAEELEKFKTIIDQ--YEFR---KQAILDFLKEHGIDLSELDAVVG 73 (358)
T ss_pred EEEEEcCCCchheEEEEc-CCceeeeeccccCHHHHhcCCCccch--HHHH---HHHHHHHHHHcCCChhcceEEEE
Confidence 489999999999999998 4455555555554211 1222333 3332 24455667777887888888844
No 156
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=66.30 E-value=15 Score=36.11 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=44.8
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
+|+||-.|..+-+++++ +++++.+.....+ ..--+.+...+++++++.++..++|.+|+++.-
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~~------------~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~G 63 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEAG------------RNHSEILLPMIEELLAEAGLSLQDLDAIAVGVG 63 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehhh------------HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 48999999999999998 6677765443221 122233455677777888888899999999764
No 157
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=66.12 E-value=20 Score=37.84 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh---CCceeccCC
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 547 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~ 547 (634)
+.++++ ++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+ +.++++++.
T Consensus 232 ~~~iA~---~~q~~l~~~l~~~~~~~~~~-~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 232 KADIAA---SFQAAVVDVLVEKTKRALKK-TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 346554 66666666666666555332 34678999999999999999999998 888887553
No 158
>PRK14878 UGMP family protein; Provisional
Probab=65.89 E-value=15 Score=39.00 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh---CCceeccCC
Q 006707 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 547 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~~ 547 (634)
+++.+.++-.+-...+...+. ..+++|.++||.+.|..+++.+.+.+ |.+|++++.
T Consensus 219 a~fq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~ 277 (323)
T PRK14878 219 YSLRETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPP 277 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 466676666666666555432 24678999999999999999999987 888988763
No 159
>PRK00976 hypothetical protein; Provisional
Probab=64.93 E-value=17 Score=38.39 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=36.8
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC-C-c
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA-T-C 133 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~-~-~ 133 (634)
+|+|||-|||++|.++++.+..-+.+..+ ++.-..=...+.++ +..++.++|..|+++. | .
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~~~~~f~~~r---------------~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ysmgd 64 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGGKKSIFKLPR---------------TEAKSMEKSALEEL--EKRVPLEDIELIAVTYSMGD 64 (326)
T ss_pred eEEeecCCCccEEEEEEcCCceeEEEeeH---------------HHhhhccHHHHHHH--hcCCChhheeEEEEeecccC
Confidence 58999999999999999433322222111 11100011223333 3356788999999995 6 4
Q ss_pred ee
Q 006707 134 SL 135 (634)
Q Consensus 134 ~~ 135 (634)
++
T Consensus 65 ~~ 66 (326)
T PRK00976 65 GI 66 (326)
T ss_pred Ch
Confidence 43
No 160
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=64.86 E-value=14 Score=38.96 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh---CCceeccC
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR 546 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---g~pV~~~~ 546 (634)
+.+++ +++.+.++-.+-+..+...+. ..+++|.++||.+.|..+++.+.+.+ +..|++++
T Consensus 231 ~~~iA---asfq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 231 KEDIA---YSFQETAFDHLIEKTKRALKD-TGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 34544 467777766666666555432 34678999999999999999998887 67787755
No 161
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=64.42 E-value=24 Score=36.47 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC--CccEEEEecCCCC-CHHHHHHHHHhhCC-----ceeccCCCChhhHHHHHHHHhh
Q 006707 491 LATVQGIAYGTRHIVEHCNAHGH--KIDTLLACGGLAK-NPLFLQQHADIIGC-----PIILPRENESVLLGAAILGAVA 562 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~g~--~~~~I~~~GG~a~-s~~~~Qi~Advlg~-----pV~~~~~~ea~alGAA~lA~~~ 562 (634)
|-.=|-++-+++.++.++..... ..=.|+.+||.-+ ++.|++=+-+-+-. .++.....+.+|+|||++|+.-
T Consensus 238 r~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~ 317 (336)
T KOG1794|consen 238 RNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASL 317 (336)
T ss_pred HHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhh
Confidence 33444455555555555533222 2346999999865 57777644333322 2555567889999999999987
Q ss_pred cCCC
Q 006707 563 AKRY 566 (634)
Q Consensus 563 ~g~~ 566 (634)
.+..
T Consensus 318 ~~~~ 321 (336)
T KOG1794|consen 318 DNIE 321 (336)
T ss_pred cccc
Confidence 7643
No 162
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=63.76 E-value=18 Score=39.40 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCC-CHHHHHHHHHhhC-Cceecc
Q 006707 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAK-NPLFLQQHADIIG-CPIILP 545 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~-s~~~~Qi~Advlg-~pV~~~ 545 (634)
+-++|..+|+++..+-.|-. ....++-|+++||... ++.+++++.+.+. .||.+-
T Consensus 296 ~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~~~gv~ld 353 (388)
T PF00871_consen 296 KLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLWFLGVKLD 353 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcCcCCeEec
Confidence 46799999999988877654 4357899999999886 5677788888765 566663
No 163
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=61.95 E-value=31 Score=37.95 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=49.6
Q ss_pred EEEEEecCCcccEEEEEc--CCCc--EEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEec
Q 006707 56 VFLGVDVGTGSARAGLFD--ESGK--LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d--~~g~--vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis 130 (634)
++.|+|+||+.+++++-- .+|+ ++...++ +..- ..| .-.|.+...+++.+++.++-..+|....+| .++++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~--~SrGik~G-~I~di~~~~~sI~~av~~AE~mag~~i~~v-~vs~s 82 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSH--PSRGIKKG-VIVDLDAAAQSIKKAVEAAERMAGCEIKSV-IVSLS 82 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecc--cCcccccc-eEEcHHHHHHHHHHHHHHHHHhcCCCcceE-EEEec
Confidence 899999999999999987 3443 2232222 2111 344 346899999999999988888877765543 46666
Q ss_pred C
Q 006707 131 A 131 (634)
Q Consensus 131 ~ 131 (634)
+
T Consensus 83 G 83 (418)
T COG0849 83 G 83 (418)
T ss_pred c
Confidence 5
No 164
>PRK07157 acetate kinase; Provisional
Probab=58.91 E-value=35 Score=37.17 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCCHH-HHHHHHHhhC
Q 006707 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADIIG 539 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~s~~-~~Qi~Advlg 539 (634)
-++|..+|+++..+-.|-. .+..++-|+++||...|.. +++.+.+-++
T Consensus 297 lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 297 FALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 5789999999988877654 4556899999999987665 7766666544
No 165
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=58.54 E-value=40 Score=39.06 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCC---ce----eccCCCChhhHH
Q 006707 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PI----ILPRENESVLLG 554 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~---pV----~~~~~~ea~alG 554 (634)
++..++. +...+++-.+..++..+.+ ...+++|.++||...|+.+++-+++.+.. .+ .+|..+.+-++|
T Consensus 665 ~~~~iA~---~fh~~la~~~~e~~~~~a~-~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslG 740 (750)
T COG0068 665 EPEKIAT---KFHNALAEGFAELAVELAK-KYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLG 740 (750)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHH-hcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHH
Confidence 3444443 5555666655555555543 24578999999999999999999999874 33 345556677899
Q ss_pred HHHHHH
Q 006707 555 AAILGA 560 (634)
Q Consensus 555 AA~lA~ 560 (634)
=|+.|+
T Consensus 741 Q~v~~~ 746 (750)
T COG0068 741 QAVAAA 746 (750)
T ss_pred HHHHHH
Confidence 998873
No 166
>PRK12397 propionate kinase; Reviewed
Probab=58.53 E-value=35 Score=37.21 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCC-CHHHHHHHHHhh
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHADII 538 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~-s~~~~Qi~Advl 538 (634)
-++|..+|+++..+-.+-..-..++-|+++||... +..+++.+.+-|
T Consensus 299 lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 299 LALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhhh
Confidence 58899999999888777543346899999999875 555555554443
No 167
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=56.48 E-value=25 Score=39.13 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=42.3
Q ss_pred CcEEEEEecCCcccEEEEEcCCCc--EEEEEEeee--ccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGK--LLGSASSPI--QIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~--vl~~~~~~~--~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~ 119 (634)
+.-+++||+|.|+.|+.++-.+|. .+......| |..--.| ..+++|+.+.+++.+.+++.+.
T Consensus 85 ~G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~m~g----t~~~Lfd~Ia~~l~~F~~~~~~ 150 (474)
T KOG1369|consen 85 KGKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEIMQG----TGEELFDFIARCLADFLDKMGL 150 (474)
T ss_pred CCCEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHHHcC----chHHHHHHHHHHHHHHHHHhcc
Confidence 346899999999999999986544 233222223 2211112 5788999999999999887643
No 168
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=56.15 E-value=31 Score=36.63 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=55.6
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeecc-cc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQI-WK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~-~~-~~g~~-eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
.+|||.-.-.-+-+.+++.+. +++.....+-. +. .+|-+ |.-...=.+.+..++++++++++++.++|.+|++|..
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~g 80 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAG 80 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecC
Confidence 478888777777888898766 66655443322 22 33432 3334445677888999999999998899999999976
Q ss_pred ceeE
Q 006707 133 CSLV 136 (634)
Q Consensus 133 ~~~V 136 (634)
.|++
T Consensus 81 PGL~ 84 (342)
T COG0533 81 PGLG 84 (342)
T ss_pred CCch
Confidence 5543
No 169
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=55.42 E-value=24 Score=35.27 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=48.3
Q ss_pred EEEEEecCCcccEEEEEcC-CCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-c
Q 006707 56 VFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~-~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~-~ 133 (634)
.+|+||..|..+-+++++. +++++.+.....+. .-.+. +...+++++.+.+....++.+|+++.- .
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~r--------~hse~----l~~~i~~ll~~~~~~~~dld~iav~~GPG 69 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLKR--------NHAER----LMPMIDELLKEAGLSLQDLDAIAVAKGPG 69 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEeccc--------cHHHH----HHHHHHHHHHHcCCCHHHCCEEEEccCCC
Confidence 4799999999999888884 68888877666541 11233 334566777777777889999999854 4
Q ss_pred ee
Q 006707 134 SL 135 (634)
Q Consensus 134 ~~ 135 (634)
|+
T Consensus 70 SF 71 (220)
T COG1214 70 SF 71 (220)
T ss_pred cc
Confidence 43
No 170
>PRK09557 fructokinase; Reviewed
Probab=55.41 E-value=48 Score=34.49 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhh---------CCceeccC-CCChhhHHHHHHH
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---------GCPIILPR-ENESVLLGAAILG 559 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advl---------g~pV~~~~-~~ea~alGAA~lA 559 (634)
.+++-.+..+...+-.+.. -..++.|++.||.++.+.+...+-..+ ..+|.... ..+++++|||+++
T Consensus 223 ~~l~~~~~~La~~l~~l~~-~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 223 LAFRRYEDRLAKSLAHVIN-ILDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 4555444444444444432 245788888888776654443222222 23344433 3457889999865
No 171
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=54.75 E-value=9.7 Score=44.30 Aligned_cols=19 Identities=21% Similarity=0.562 Sum_probs=17.3
Q ss_pred EEEEEecCCcccEEEEEcC
Q 006707 56 VFLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~ 74 (634)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999973
No 172
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=54.56 E-value=43 Score=39.07 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCC--HHHHH------------HHHHhhCCceeccCCCChhhHHHHH
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN--PLFLQ------------QHADIIGCPIILPRENESVLLGAAI 557 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s--~~~~Q------------i~Advlg~pV~~~~~~ea~alGAA~ 557 (634)
.+++-.+..+-..+-.+...-.+++.|++.||.+.+ +.+.+ +..-+-++||++...++.+.+|||.
T Consensus 247 ~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~ 326 (638)
T PRK14101 247 EAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVSA 326 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHH
Confidence 344444444443333333222246788888888743 33322 2223356899999989999999998
Q ss_pred HHHhhcCC
Q 006707 558 LGAVAAKR 565 (634)
Q Consensus 558 lA~~~~g~ 565 (634)
.+...+..
T Consensus 327 ~~~~~~~~ 334 (638)
T PRK14101 327 ILAEQLSN 334 (638)
T ss_pred HHHHHhcc
Confidence 88887754
No 173
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=54.06 E-value=19 Score=36.53 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhC-CCC--ccEEEEecCC-CCCHHHHHHHHHhhC-------Cce
Q 006707 482 SEKQLALLYLATVQGIAYGTRH--------IVEHCNAH-GHK--IDTLLACGGL-AKNPLFLQQHADIIG-------CPI 542 (634)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~--------~~~~l~~~-g~~--~~~I~~~GG~-a~s~~~~Qi~Advlg-------~pV 542 (634)
+.++.. .+|-+.+.+.-.-.. ++..+++. +.+ .-.|-+.|+. -+.+.+.+.+.+.+. .+|
T Consensus 143 t~~d~~-~lr~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v 221 (243)
T PF03727_consen 143 TEEDRQ-ILRRICEAVSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEEGCKV 221 (243)
T ss_dssp -HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEE
T ss_pred CHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccccceE
Confidence 334433 566666665443322 23333322 233 2334455665 367777777666553 477
Q ss_pred eccCCCChhhHHHHHHHHhhc
Q 006707 543 ILPRENESVLLGAAILGAVAA 563 (634)
Q Consensus 543 ~~~~~~ea~alGAA~lA~~~~ 563 (634)
......+++.+|||++||.+.
T Consensus 222 ~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 222 EFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp EEEE-SSTHHHHHHHHHHHHH
T ss_pred EEEEecCchHHHHHHHHHHhc
Confidence 777788999999999999863
No 174
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=53.59 E-value=1.6e+02 Score=27.13 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEecCCcccEEEEEcCCCcE
Q 006707 57 FLGVDVGTGSARAGLFDESGKL 78 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~v 78 (634)
+||||+|+..+=.++-|..+.+
T Consensus 6 iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 6 ILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred EEEEEeCCCEEEEEEecCCCCE
Confidence 8999999999999999987754
No 175
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=53.16 E-value=38 Score=31.71 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEecCC----cccEEEEEcCCCcEEEEEEe
Q 006707 56 VFLGVDVGT----GSARAGLFDESGKLLGSASS 84 (634)
Q Consensus 56 ~~LGIDiGT----tsiKavl~d~~g~vl~~~~~ 84 (634)
-+|+|-.|. ..++++++|++|+++...+.
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 467777774 45899999999999988776
No 176
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=53.15 E-value=19 Score=40.53 Aligned_cols=72 Identities=19% Similarity=0.162 Sum_probs=39.2
Q ss_pred cEEEEEecCCcccEEEEEcCC-C--cEEEEEEeeeccc---cCCCccccCHHHHHHHHHHHHH---HHHHHcCCCCCCeE
Q 006707 55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIW---KEGDCIEQSSTDIWHAICAAVD---SACSLANVDGEEVK 125 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~-g--~vl~~~~~~~~~~---~~~g~~eqdp~~~~~a~~~~l~---~~l~~~~~~~~~I~ 125 (634)
+.+.+||+||-|++.++++.. | +++...+.....- ...|. .+++.+-+ ..++|+ ++++.. ...+|.
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~--L~~eai~R-~~~aL~~f~e~~~~~--~~~~v~ 77 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGN--LSEEAIER-ALSALKRFAELLDGF--GAEEVR 77 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCC--cCHHHHHH-HHHHHHHHHHHHhhC--CCCEEE
Confidence 457899999999999999944 3 3444333322211 12232 23333322 223443 444443 356677
Q ss_pred EEEecC
Q 006707 126 GVGFAA 131 (634)
Q Consensus 126 aIgis~ 131 (634)
+|+-++
T Consensus 78 ~vATsA 83 (492)
T COG0248 78 VVATSA 83 (492)
T ss_pred EehhHH
Confidence 777655
No 177
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=52.94 E-value=35 Score=40.03 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=45.5
Q ss_pred CCCCcEEEEEecCCc-ccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEe
Q 006707 51 ARSRSVFLGVDVGTG-SARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (634)
Q Consensus 51 ~m~~~~~LGIDiGTt-siKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgi 129 (634)
++..+.++|+|-|.- ++|.+++|..|+.+....+ || ++|..-++.....|+.++.+.++ ++.+||.
T Consensus 326 P~~~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I-yp---------~~p~~~~~~~~~~l~~l~~~~~V---e~iaIGn 392 (780)
T COG2183 326 PAKPKATLGLDPGFRTGCKVAVVDDTGKLLDTATI-YP---------HPPVNQSDKAEATLKDLIRKYKV---ELIAIGN 392 (780)
T ss_pred CCCCcceeecCCccccccEEEEEcCCCceeceeEE-Ec---------CCCccchHHHHHHHHHHHHHhCc---eEEEEec
Confidence 444567899999974 4999999999998876543 22 12222245555666677666543 5678888
Q ss_pred cC
Q 006707 130 AA 131 (634)
Q Consensus 130 s~ 131 (634)
.+
T Consensus 393 gT 394 (780)
T COG2183 393 GT 394 (780)
T ss_pred CC
Confidence 66
No 178
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=52.01 E-value=9.3 Score=39.76 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEecCCcccEEEEEcCCCcEE
Q 006707 57 FLGVDVGTGSARAGLFDESGKLL 79 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl 79 (634)
|+|||-|||++|.++.+.+++.+
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 58999999999999999888654
No 179
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=51.85 E-value=65 Score=33.46 Aligned_cols=54 Identities=22% Similarity=0.115 Sum_probs=33.3
Q ss_pred CCHHHHHHcCCCCCCcEEEccchhhhhhhccc--cccCcccchhchhhhhhccceEEEEecccceeeeeeCcc
Q 006707 299 LTPAAAKELGLVPGTPVGTSLIDAHAGGVGVM--ESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 369 (634)
Q Consensus 299 i~~~~a~~~GL~~g~pV~~g~gD~~aa~~g~~--g~~~~g~~~~~~~~~g~~~g~~~is~GTs~~~~~~~~~p 369 (634)
+.+.+.+++|+ ||. -..|..|+++|-. +..+. ..+.+++++||.-....+.+..
T Consensus 88 l~~~l~~~~~~----pV~-ieNDa~aaalaE~~~g~~~~------------~~~~~~l~~gtGiG~giv~~G~ 143 (303)
T PRK13310 88 LRADLSARLGR----DVR-LDNDANCFALSEAWDDEFTQ------------YPLVMGLILGTGVGGGLVFNGK 143 (303)
T ss_pred HHHHHHHHHCC----CeE-EeccHhHHHHHHhhhccccC------------CCcEEEEEecCceEEEEEECCE
Confidence 66677777765 554 5688888777631 11110 1356888999987666666654
No 180
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=51.59 E-value=14 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.2
Q ss_pred CCCcEEEEEecCCcccEEEEEcC
Q 006707 52 RSRSVFLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 52 m~~~~~LGIDiGTtsiKavl~d~ 74 (634)
|+...++|||+|||+.++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 44456899999999999999874
No 181
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=50.75 E-value=35 Score=34.72 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=32.5
Q ss_pred ccEEEEecCCCCCHHHHHHHHHhhCCceeccCC---C----ChhhHHHHHHHH
Q 006707 515 IDTLLACGGLAKNPLFLQQHADIIGCPIILPRE---N----ESVLLGAAILGA 560 (634)
Q Consensus 515 ~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~---~----ea~alGAA~lA~ 560 (634)
.++|+.+|=| ..+.|.-++.+|..+...+. . -+.|.|+|.+..
T Consensus 279 L~~Vv~~GlG---efLi~~A~~~lg~ec~~i~e~~g~~~s~v~PA~a~a~L~~ 328 (330)
T COG1548 279 LNTVVATGLG---EFLIQEACKRLGYECISIDETYGKEVSKVAPAVAAAKLLE 328 (330)
T ss_pred hhhhhhccch---HHHHHHHHHhhCCeEEEhhhhhccchhhhchHHHHHHHHh
Confidence 5788888866 79999999999988875442 2 257888887753
No 182
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=49.70 E-value=41 Score=33.01 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=12.1
Q ss_pred cEEEEEecCCcccEEEEEcCCCcEE
Q 006707 55 SVFLGVDVGTGSARAGLFDESGKLL 79 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g~vl 79 (634)
++.+|+|+||.++-.+++|.||+.+
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d~~Pv 53 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRDGQPV 53 (277)
T ss_pred ceEEEeecccceEEEEEEcCCCCeE
Confidence 3444555555555555555444443
No 183
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=48.99 E-value=36 Score=30.97 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=23.9
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEee
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSP 85 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~ 85 (634)
|+|||+|-...-++++|.+|.++.....+
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEe
Confidence 68999999999999999999666554444
No 184
>CHL00094 dnaK heat shock protein 70
Probab=48.61 E-value=13 Score=43.17 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=18.2
Q ss_pred EEEEEecCCcccEEEEEcCCCc
Q 006707 56 VFLGVDVGTGSARAGLFDESGK 77 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~ 77 (634)
+++|||+|||+.++++++ +|+
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~ 23 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME-GGK 23 (621)
T ss_pred ceEEEEeCcccEEEEEEE-CCE
Confidence 689999999999999997 344
No 185
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=48.26 E-value=26 Score=38.99 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=50.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCC-CCc--cEEEEecCCC-CCHHHHHHHHHhhC------
Q 006707 475 CGMTLDSSEKQLALLYLATVQGIAYGTRHIV-----EHCNAHG-HKI--DTLLACGGLA-KNPLFLQQHADIIG------ 539 (634)
Q Consensus 475 ~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~-----~~l~~~g-~~~--~~I~~~GG~a-~s~~~~Qi~Advlg------ 539 (634)
+|+...+. ++. .++|.+++.++=.-.+.. -.+.+.+ ... ..|-+.|+.= ..|.+.|.+...+.
T Consensus 367 l~~~~~~~-~~r-~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~~ 444 (474)
T KOG1369|consen 367 LGLETTTT-EDR-KLVREVCDVVSRRAARLAAAGIAAILNKTGELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLGPS 444 (474)
T ss_pred hCCCcCcH-HHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCceEEEeccchhHcCchHHHHHHHHHHHHhCCC
Confidence 45554432 222 256677777654332211 1223333 222 2333445443 45777777666554
Q ss_pred CceeccCCCChhhHHHHHHHHhhcC
Q 006707 540 CPIILPRENESVLLGAAILGAVAAK 564 (634)
Q Consensus 540 ~pV~~~~~~ea~alGAA~lA~~~~g 564 (634)
..|.+....+.+++|||++|+.+..
T Consensus 445 ~~v~i~~s~dgSg~GAAL~Aav~~~ 469 (474)
T KOG1369|consen 445 IHVKLVLSEDGSGRGAALIAAVASR 469 (474)
T ss_pred ceEEEEECCCCccccHHHHHHHHhh
Confidence 5777778889999999999998754
No 186
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=48.18 E-value=25 Score=31.37 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=31.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 96 eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
+-++++++++..+++.+++++.++++++|.+|-||.+
T Consensus 12 ~n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T 48 (118)
T PF07736_consen 12 ENTPEEILEATRELLEEILERNELSPEDIVSIIFTVT 48 (118)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 3678999999999999999999999999999999865
No 187
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=47.79 E-value=42 Score=34.27 Aligned_cols=61 Identities=26% Similarity=0.242 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 560 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~ 560 (634)
..++-|..+.++..++.+++.......++++||.++ ++.+.+. .+.. .+.-+..|-+.++.
T Consensus 189 sG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~------~~~~~~~-~~~~--d~~Ltl~Gl~~i~~ 249 (251)
T COG1521 189 SGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK------LLLDELD-IDIF--DPNLTLLGLALLLA 249 (251)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH------hhhhhcc-ccee--CcchhHHHHHHHhh
Confidence 377777788888888888765445678999999874 4445555 2222 23456777776654
No 188
>PRK11678 putative chaperone; Provisional
Probab=47.52 E-value=14 Score=41.17 Aligned_cols=20 Identities=35% Similarity=0.748 Sum_probs=17.6
Q ss_pred EEEEecCCcccEEEEEcCCCc
Q 006707 57 FLGVDVGTGSARAGLFDESGK 77 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~ 77 (634)
++|||+|||+.-+++++ +|+
T Consensus 2 ~iGID~GTtNs~va~~~-~~~ 21 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGK 21 (450)
T ss_pred eEEEecCccceeeEEee-CCc
Confidence 68999999999999998 454
No 189
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=47.46 E-value=18 Score=42.11 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.6
Q ss_pred cEEEEEecCCcccEEEEEcC
Q 006707 55 SVFLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~ 74 (634)
.+++|||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 47899999999999998863
No 190
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=47.15 E-value=73 Score=32.86 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHH-HHHHHhhC------CceeccC-CCChhhHHHHHHHH
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADIIG------CPIILPR-ENESVLLGAAILGA 560 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~-Qi~Advlg------~pV~~~~-~~ea~alGAA~lA~ 560 (634)
.+++-.+..+...+..+... ..++.|++.|+.+.++.+. ++...+-. .+|.... ..+++++|||.++.
T Consensus 212 ~~~~~~~~~la~~l~~l~~~-~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLKAT-LDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 44444444444444444332 4578888888876554444 33333321 2344433 34678899998763
No 191
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=46.90 E-value=69 Score=34.28 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHH
Q 006707 513 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 560 (634)
Q Consensus 513 ~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~ 560 (634)
...++|+++||+|+ .+.+.+.+.|+.-+...+...+-|+|...+|.
T Consensus 290 ~~~d~IiL~GGGA~--ll~~~lk~~f~~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 290 NSFDRVIVTGGGAN--IFFDSLSHWYSDVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCCCEEEEECCcHH--HHHHHHHHHcCCeEEcCChHHHHHHHHHHHHH
Confidence 46789999999986 57788888888643333344477888887775
No 192
>PRK13410 molecular chaperone DnaK; Provisional
Probab=46.82 E-value=17 Score=42.71 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=17.2
Q ss_pred EEEEEecCCcccEEEEEcC
Q 006707 56 VFLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~ 74 (634)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG 21 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC
Confidence 5899999999999999874
No 193
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=46.79 E-value=50 Score=35.16 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=54.7
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeecc-cc-CCCccccCHHHH-HHHHHHHHHHHHHHcCCCCCCeEEEEecCCc
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQI-WK-EGDCIEQSSTDI-WHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~-~~-~~g~~eqdp~~~-~~a~~~~l~~~l~~~~~~~~~I~aIgis~~~ 133 (634)
+|||.-.-.-+-++++|+.++++++....-.+ .. .+|-...-.... -+.+..++++++.+++..+.++.+|+++-..
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gP 113 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGP 113 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCC
Confidence 89999877788899999999988875422111 11 444332222222 3456678888888889899999999998765
Q ss_pred eeE
Q 006707 134 SLV 136 (634)
Q Consensus 134 ~~V 136 (634)
|+.
T Consensus 114 Gl~ 116 (405)
T KOG2707|consen 114 GLP 116 (405)
T ss_pred Cce
Confidence 543
No 194
>PLN03184 chloroplast Hsp70; Provisional
Probab=46.24 E-value=20 Score=42.10 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.0
Q ss_pred CcEEEEEecCCcccEEEEEcC
Q 006707 54 RSVFLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~ 74 (634)
+..++|||+|||+.++++++.
T Consensus 38 ~~~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEEC
Confidence 345899999999999999874
No 195
>PRK07058 acetate kinase; Provisional
Probab=45.90 E-value=29 Score=37.75 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCC-CCHHHHHHHHHhhC
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADIIG 539 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg 539 (634)
-++|..+|+++..+-.+-..=..++-|+++||.. +|+.+++.+.+-+.
T Consensus 296 lA~d~f~yri~k~IGa~~a~Lg~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 296 EALDLFALRIAGEIARLAATLGGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 6889999999998877654224789999999998 77878877766654
No 196
>PRK13411 molecular chaperone DnaK; Provisional
Probab=45.49 E-value=17 Score=42.46 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=17.2
Q ss_pred EEEEEecCCcccEEEEEcC
Q 006707 56 VFLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~ 74 (634)
.++|||+|||+.++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG 21 (653)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 5899999999999999873
No 197
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=45.42 E-value=34 Score=35.17 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCC-----CHHHHHH---HHHh-hCCceeccCC---CChhhHHHH
Q 006707 489 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK-----NPLFLQQ---HADI-IGCPIILPRE---NESVLLGAA 556 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~-----s~~~~Qi---~Adv-lg~pV~~~~~---~ea~alGAA 556 (634)
.|+++.|++.-.++..+- ...++-|+++|-.++ +++-..+ ++.. ++..|...+. .--+|-|||
T Consensus 253 ~~~~l~e~vvK~v~tllp-----s~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaA 327 (374)
T COG2441 253 TYNALIEGVVKDVFTLLP-----STYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAA 327 (374)
T ss_pred HHHHHHHHHHHHHHHhcc-----ccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchh
Confidence 467999988765554432 244567999998876 2222111 1221 3455554432 123688999
Q ss_pred HHHH-hhcCCCCCHHHHHHHhhhcCcEEe
Q 006707 557 ILGA-VAAKRYSSLIEAMKAMNAAGQVCM 584 (634)
Q Consensus 557 ~lA~-~~~g~~~~~~e~~~~~~~~~~~~~ 584 (634)
++|- .+-|.|+.+-+..+-.......|.
T Consensus 328 iiAnaiAGG~yrelvd~l~l~essGtifd 356 (374)
T COG2441 328 IIANAIAGGLYRELVDVLKLRESSGTIFD 356 (374)
T ss_pred hhhhhhcchhHHHHHHHHHHHhccCCeee
Confidence 9985 666777655555443333444444
No 198
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=45.06 E-value=61 Score=36.04 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCCCcEEEEEecCCcccEEEEEc---CCCc-EEEEEEeeecccc-CCC--ccccCHHHHHHHHHHHHHHHHHH
Q 006707 51 ARSRSVFLGVDVGTGSARAGLFD---ESGK-LLGSASSPIQIWK-EGD--CIEQSSTDIWHAICAAVDSACSL 116 (634)
Q Consensus 51 ~m~~~~~LGIDiGTtsiKavl~d---~~g~-vl~~~~~~~~~~~-~~g--~~eqdp~~~~~a~~~~l~~~l~~ 116 (634)
.++-+|-+.||.|+|+.|.-||. ++|+ ++......+.... .|| .+..+|+..-..+..+++.+.++
T Consensus 5 ~~~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~ 77 (501)
T KOG1386|consen 5 PPNLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEH 77 (501)
T ss_pred CCcceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhh
Confidence 34557999999999999999996 5677 4555555555444 777 35689999988888888666554
No 199
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=44.97 E-value=28 Score=36.68 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCccE-EEEecCCCCCHHHHHHHHHhhCCceeccCCC-ChhhHHHHH
Q 006707 484 KQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAI 557 (634)
Q Consensus 484 ~~~~~~~rAvlEgia~~~r~~~~~l~~-~-g~~~~~-I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~-ea~alGAA~ 557 (634)
.++..-++-.++++.-.+|..++.... . ..-.++ ++++||+|.-+-+-+.+++-++.||++.+.+ ...|+|+..
T Consensus 250 ~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~ 327 (342)
T COG1077 250 EEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGK 327 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccch
Confidence 444444455666666666666665321 1 122345 9999999987788899999999999996644 244445443
No 200
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=44.82 E-value=19 Score=41.50 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.3
Q ss_pred cEEEEEecCCcccEEEEEcCCC
Q 006707 55 SVFLGVDVGTGSARAGLFDESG 76 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g 76 (634)
..++|||+|||+..+++++.++
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 4689999999999999999663
No 201
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=44.40 E-value=22 Score=37.12 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 559 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA 559 (634)
++-+.|+...... ..+.......++|.++|...-+..+.+.++ .+|.++...+..+++..|-..+|
T Consensus 221 ~~yLsGlLIG~El--~a~~~~~~~~~~v~LiG~~~L~~~Y~~AL~-~~G~~~~~~d~~~~~~~Gl~~ia 286 (287)
T PF05035_consen 221 ASYLSGLLIGAEL--AAARPYLWLGQPVALIGSGPLCALYARALA-AQGLPVRRVDADEAALAGLWAIA 286 (287)
T ss_dssp HHHHHHHHHHHHH--HHHCTTTSSSSEEEEEE-HHHHHHHHHHHH-HTT-EEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHhhcccCCCeEEEEeCHHHHHHHHHHHH-HCCCCceeeCHHHHHHHHHHHHh
Confidence 3666666555321 122222235689999999888788777665 45999988777778887877665
No 202
>PTZ00107 hexokinase; Provisional
Probab=44.13 E-value=1.3e+02 Score=33.78 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCC--CccEEEEecCCC-CCHHHHHHHHHhh----C---CceeccCC
Q 006707 483 EKQLALLYLATVQGIAYGTRHIVE-----HCNAHGH--KIDTLLACGGLA-KNPLFLQQHADII----G---CPIILPRE 547 (634)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~~~-----~l~~~g~--~~~~I~~~GG~a-~s~~~~Qi~Advl----g---~pV~~~~~ 547 (634)
.+++. .+|-+.+.+.-.-..... .+...+. ..-.|-+.|+.- +.+.+.+.+...+ + .+|.....
T Consensus 367 ~~d~~-~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a 445 (464)
T PTZ00107 367 DEDLY-TIRKICELVRGRAAQLAAAFIAAPAKKTRTVQGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLA 445 (464)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 34433 556666665544333322 2233333 334677778864 5666665555444 3 45777778
Q ss_pred CChhhHHHHHHHHhhc
Q 006707 548 NESVLLGAAILGAVAA 563 (634)
Q Consensus 548 ~ea~alGAA~lA~~~~ 563 (634)
.+++.+|||++||.+.
T Consensus 446 ~DGSg~GAAl~AA~~~ 461 (464)
T PTZ00107 446 DDGSGKGAAIIAAMVA 461 (464)
T ss_pred cCchHHHHHHHHHHhc
Confidence 8899999999999874
No 203
>PRK12379 propionate/acetate kinase; Provisional
Probab=44.09 E-value=83 Score=34.34 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCCCC-HHHHHHHHHhh
Q 006707 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKN-PLFLQQHADII 538 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a~s-~~~~Qi~Advl 538 (634)
-++|..+|+++..+-.+-. .+ .++-|+++||...| ..+++.+.+-|
T Consensus 295 lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~L 342 (396)
T PRK12379 295 LAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhh
Confidence 4789999999888876654 45 78999999998754 55555555544
No 204
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.10 E-value=72 Score=33.78 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=42.2
Q ss_pred EEEEEecCCcccEEEEEcCCCc---EEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006707 56 VFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEE 123 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~---vl~~~~~~~~~~~-~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~ 123 (634)
..+|||||++++|++-+...|+ +...+..+.|.-- .+|. -+|++.+ .+.|+++++++++..++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg~-ivd~~av----~~~Lk~ala~~gi~~k~ 77 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADGK-IVDYDAV----ASALKRALAKLGIKSKN 77 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccCC-cccHHHH----HHHHHHHHHhcCcchhh
Confidence 6899999999999999996654 3444455555433 3443 3566554 45677777877765444
No 205
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=42.55 E-value=1.5e+02 Score=28.20 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEecCCcccEEEEEcCCCc
Q 006707 56 VFLGVDVGTGSARAGLFDESGK 77 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~ 77 (634)
.+||||-|++++=-++++.+++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999997665
No 206
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=41.96 E-value=77 Score=29.15 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=25.4
Q ss_pred CCcEEEEEecCCcccEEEEEcCCCcEEEEEEeee
Q 006707 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (634)
Q Consensus 53 ~~~~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~ 86 (634)
...+++|||=|||.- .+++|.+|+++...+...
T Consensus 30 ~~~lIVGiDPG~ttg-iAildL~G~~l~l~S~R~ 62 (138)
T PF04312_consen 30 RRYLIVGIDPGTTTG-IAILDLDGELLDLKSSRN 62 (138)
T ss_pred CCCEEEEECCCceeE-EEEEecCCcEEEEEeecC
Confidence 345788999999865 455699999998776653
No 207
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=41.72 E-value=23 Score=41.52 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.2
Q ss_pred cEEEEEecCCcccEEEEEcCC
Q 006707 55 SVFLGVDVGTGSARAGLFDES 75 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~ 75 (634)
..++|||+|||+..+++++.+
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC
Confidence 368999999999999999753
No 208
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=41.52 E-value=37 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 96 eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
+-+.++++++..+++.+++++.++++++|.+|-||.+
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T 48 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEec
Confidence 4578999999999999999999999999999999875
No 209
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=41.48 E-value=37 Score=30.29 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q 006707 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 96 eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis~~ 132 (634)
+-++++++++..+++.+++++.++++++|.+|-||.+
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T 48 (117)
T cd02185 12 ENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 4578999999999999999999999999999999875
No 210
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=41.23 E-value=1e+02 Score=32.23 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCC-HHHHHHHHHhhC----------CceeccC-CCChhhHHHHHHH
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIG----------CPIILPR-ENESVLLGAAILG 559 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s-~~~~Qi~Advlg----------~pV~~~~-~~ea~alGAA~lA 559 (634)
.+++-.+..+-..+..+... ..++.|++.|+.++. +.+.+.+...+. .+|.... ..+++++|||.++
T Consensus 230 ~i~~~~~~~L~~~i~~~~~~-~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 230 DSYREVARWAGAGLADLASL-FNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 56666666665555544432 467888888887763 445544333321 2344444 3457899999887
Q ss_pred Hh
Q 006707 560 AV 561 (634)
Q Consensus 560 ~~ 561 (634)
..
T Consensus 309 ~~ 310 (318)
T TIGR00744 309 RT 310 (318)
T ss_pred HH
Confidence 64
No 211
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=41.14 E-value=20 Score=41.43 Aligned_cols=18 Identities=22% Similarity=0.625 Sum_probs=16.5
Q ss_pred EEEEecCCcccEEEEEcC
Q 006707 57 FLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~ 74 (634)
++|||+|||+.++++++.
T Consensus 2 viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred EEEEEeCcccEEEEEEEC
Confidence 689999999999999974
No 212
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=40.42 E-value=71 Score=34.35 Aligned_cols=70 Identities=9% Similarity=0.061 Sum_probs=44.5
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeee-ccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEec
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~-~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~~~~I~aIgis 130 (634)
+|.|..|+||+|++|||.+++++.+..... +.... .+...+++.-. .+.+.+++++.++...+|.+|+--
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~~~~~---~~~~~~q~~~r-~~~i~~~l~~~~~~~~~i~av~~R 72 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVEELGR---FKNVIDQFEFR-KQVILQFLEEHGISISKLDAVVGR 72 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCHHHhcc---cccHHHHHHHH-HHHHHHHHHHcCCCcccccEEEEC
Confidence 689999999999999999998776544443 21111 11112222212 255667777777667788888544
No 213
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=40.05 E-value=20 Score=41.23 Aligned_cols=18 Identities=28% Similarity=0.789 Sum_probs=15.3
Q ss_pred EEEEecCCcccEEEEEcC
Q 006707 57 FLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~ 74 (634)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999874
No 214
>PLN02914 hexokinase
Probab=37.69 E-value=1.7e+02 Score=32.91 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=33.8
Q ss_pred cEEEEecCCC-CCHHHHHHHHHhh----C----CceeccCCCChhhHHHHHHHHhhc
Q 006707 516 DTLLACGGLA-KNPLFLQQHADII----G----CPIILPRENESVLLGAAILGAVAA 563 (634)
Q Consensus 516 ~~I~~~GG~a-~s~~~~Qi~Advl----g----~pV~~~~~~ea~alGAA~lA~~~~ 563 (634)
..|-+.|+.- +.+.+.+.+.+.+ | .+|.+....+.+.+|||++||.+.
T Consensus 432 ~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 432 TVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred EEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhh
Confidence 4566667764 5666666555544 3 256676778999999999999864
No 215
>PRK13328 pantothenate kinase; Reviewed
Probab=37.41 E-value=1.6e+02 Score=30.18 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHh
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAV 561 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~ 561 (634)
.++-|.+-.+..+++.+++.-...-.|+++||.+ ++++..+..++.. .++-...|-+.++..
T Consensus 192 G~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGGda------~~l~~~l~~~~~~--~p~LvL~GL~~i~~~ 253 (255)
T PRK13328 192 GCLAAQAGLIERAWRDLAARWQAPVRLVLSGGAA------DAVAPALTVPHTR--HDNLVLLGLALIAAA 253 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCH------HHHHhhCCCCCEE--CCCcHHHHHHHHHhh
Confidence 5556666666666666654322235799999987 4667777777666 356788898887754
No 216
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=37.23 E-value=1.1e+02 Score=28.47 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=30.7
Q ss_pred EEEEecCCcccEEEEEcCCCcE---EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 006707 57 FLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~v---l~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~ 117 (634)
+||||-|++++--++++.+++. +......++ ...+..+=+..+.+.+.+++++.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~-------~~~~~~~Rl~~I~~~l~~li~~~ 57 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTS-------SKDSLPERLKEIYEELEELIEEY 57 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE----------S--HHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECC-------CCCCHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999976543 333233322 11123333456667777777764
No 217
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=37.00 E-value=51 Score=35.84 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=40.8
Q ss_pred CcEEEEEecCCcccEEEEEcCCCcEEEE-EEeeecccc--CCC--ccccCHHHHHHHHHHHHHHHHHH
Q 006707 54 RSVFLGVDVGTGSARAGLFDESGKLLGS-ASSPIQIWK--EGD--CIEQSSTDIWHAICAAVDSACSL 116 (634)
Q Consensus 54 ~~~~LGIDiGTtsiKavl~d~~g~vl~~-~~~~~~~~~--~~g--~~eqdp~~~~~a~~~~l~~~l~~ 116 (634)
+.|.+-||.|+|+.|+-+|-.+-..... -..+...+. +|| .+.-||++--+.+..+|+.+.+.
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~ 133 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAF 133 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhh
Confidence 5799999999999999999743221000 001112222 666 46779999888888887666543
No 218
>PLN02405 hexokinase
Probab=36.61 E-value=1.6e+02 Score=33.18 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=34.0
Q ss_pred cEEEEecCCC-CCHHHHHHHHH----hhC----CceeccCCCChhhHHHHHHHHhhc
Q 006707 516 DTLLACGGLA-KNPLFLQQHAD----IIG----CPIILPRENESVLLGAAILGAVAA 563 (634)
Q Consensus 516 ~~I~~~GG~a-~s~~~~Qi~Ad----vlg----~pV~~~~~~ea~alGAA~lA~~~~ 563 (634)
..|-+.|+.- +.+.+.+.+.. +++ .+|.+....+.+.+|||++||.+.
T Consensus 434 ~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~DGSGvGAAl~AA~~~ 490 (497)
T PLN02405 434 SVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGSGIGAALLAASHS 490 (497)
T ss_pred eEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecCchHHHHHHHHHHHh
Confidence 3566778864 56666655554 443 347776678899999999999875
No 219
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=36.58 E-value=1.5e+02 Score=31.16 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=32.0
Q ss_pred ccEEEEecCCC-------CCHHHHHHHHH-------hhCCceeccCCCChhhHHHHHHHH
Q 006707 515 IDTLLACGGLA-------KNPLFLQQHAD-------IIGCPIILPRENESVLLGAAILGA 560 (634)
Q Consensus 515 ~~~I~~~GG~a-------~s~~~~Qi~Ad-------vlg~pV~~~~~~ea~alGAA~lA~ 560 (634)
-.-|+++||.. ++..+++-+.| +-.+||++...+....+|||..+.
T Consensus 259 rGGVyiaGGI~pril~~l~~s~Fr~~FedKGr~sa~l~~IPV~vi~~~~~gL~Gaa~~~~ 318 (320)
T COG0837 259 RGGVYIAGGIVPRILEALKASGFRARFEDKGRMSAYLADIPVYVILHPQPGLLGAAAALR 318 (320)
T ss_pred cCcEEEcCCchHhHHHHHhcchHHHHhhhcCchHHHHhhCCEEEEecCCchHHHHHHHhc
Confidence 34699999975 33444444433 345899998888899999997654
No 220
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=36.41 E-value=29 Score=40.75 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=16.5
Q ss_pred EEEEEecCCcccEEEEEc
Q 006707 56 VFLGVDVGTGSARAGLFD 73 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d 73 (634)
.++|||+|||+.++++++
T Consensus 42 ~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIME 59 (663)
T ss_pred cEEEEEECcccEEEEEEe
Confidence 489999999999999986
No 221
>PRK13329 pantothenate kinase; Reviewed
Probab=36.33 E-value=1.8e+02 Score=29.62 Aligned_cols=62 Identities=26% Similarity=0.267 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHh
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAV 561 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~ 561 (634)
.++-|++..+..+++.+++.-...-.|+++||.+ ++++..+..++.+ .++-...|-..++..
T Consensus 185 G~~~g~~~~I~~~i~~~~~~~~~~~~vilTGGda------~~l~~~l~~~~~~--~~~LvL~GL~~i~~~ 246 (249)
T PRK13329 185 GGTQAIAGAVERMFRHLAQHCGAEPECLLTGGAA------WKLAPSLTVPFEL--VDNLVLDGLLVIAAR 246 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCH------HHHHhhcCCCCEE--CCCcHHHHHHHHHhh
Confidence 6677777777777777764321223799999987 5677778877766 356788888877654
No 222
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=35.77 E-value=41 Score=37.38 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=35.8
Q ss_pred EEEEEecCCcccEEEEEcCC------CcEE---E--EEEeee--ccccCCC--ccccCHHHHHHHHHHHHHHHHHHcCCC
Q 006707 56 VFLGVDVGTGSARAGLFDES------GKLL---G--SASSPI--QIWKEGD--CIEQSSTDIWHAICAAVDSACSLANVD 120 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~------g~vl---~--~~~~~~--~~~~~~g--~~eqdp~~~~~a~~~~l~~~l~~~~~~ 120 (634)
+.+|||||||.++.++=... +-.+ . ..++-| +++.+|- ..+.|.+. +.+.+++-.+++|+.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID~~a----l~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEIDAEA----LKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccCHHH----HHHHHHHHHHHcCCC
Confidence 46899999999988764311 1110 0 111112 3333332 24566654 445566666777877
Q ss_pred CCCeE
Q 006707 121 GEEVK 125 (634)
Q Consensus 121 ~~~I~ 125 (634)
+++|.
T Consensus 80 p~~I~ 84 (473)
T PF06277_consen 80 PEDID 84 (473)
T ss_pred HHHCc
Confidence 77664
No 223
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=35.37 E-value=28 Score=36.94 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.4
Q ss_pred EEEecCCcccEEEEEcCCCcEE
Q 006707 58 LGVDVGTGSARAGLFDESGKLL 79 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl 79 (634)
+|||+||+++++... .+|.++
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~ 25 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVL 25 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEE
Confidence 899999999997764 455544
No 224
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=35.26 E-value=50 Score=34.95 Aligned_cols=48 Identities=25% Similarity=0.359 Sum_probs=28.1
Q ss_pred CccEEEEecCCC-CCHHHHH---HH---------HHh-hCCceeccCCCChhhHHHHHHHHh
Q 006707 514 KIDTLLACGGLA-KNPLFLQ---QH---------ADI-IGCPIILPRENESVLLGAAILGAV 561 (634)
Q Consensus 514 ~~~~I~~~GG~a-~s~~~~Q---i~---------Adv-lg~pV~~~~~~ea~alGAA~lA~~ 561 (634)
.-.=|++.||.+ |+..+++ .+ .++ =.+||++....+.+.+|||..|..
T Consensus 254 a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~~ 315 (316)
T PF02685_consen 254 ARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYARQ 315 (316)
T ss_dssp -TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHHH
T ss_pred CCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHhc
Confidence 334699999986 5554443 11 122 347999988889999999988753
No 225
>PRK12408 glucokinase; Provisional
Probab=35.06 E-value=91 Score=33.18 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCccE-EEEecCCCCC--HHHHH---HHH--------Hhh-CCceeccCCCChhhHHHHHHHH
Q 006707 513 HKIDT-LLACGGLAKN--PLFLQ---QHA--------DII-GCPIILPRENESVLLGAAILGA 560 (634)
Q Consensus 513 ~~~~~-I~~~GG~a~s--~~~~Q---i~A--------dvl-g~pV~~~~~~ea~alGAA~lA~ 560 (634)
..++. |++.||.+.+ +.+.. +.+ ..+ ..||+.....++..+|||.++.
T Consensus 270 ldPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~GAa~~~~ 332 (336)
T PRK12408 270 YGARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLGAASWYL 332 (336)
T ss_pred HCCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHHHHHHHH
Confidence 34566 8898988743 44433 111 122 5678877766899999986554
No 226
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=35.00 E-value=44 Score=38.69 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.9
Q ss_pred cEEEEEecCCcccEEEEEc
Q 006707 55 SVFLGVDVGTGSARAGLFD 73 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d 73 (634)
..++|||+|||+..++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4689999999999998885
No 227
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=34.39 E-value=66 Score=32.10 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCC-CCCHHHHHHHHHhhC
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL-AKNPLFLQQHADIIG 539 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~-a~s~~~~Qi~Advlg 539 (634)
|++--...+.++++|.|++.|.+.+-+..+||+ ..+.++-|+=||+..
T Consensus 163 alMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~ 211 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccC
Confidence 455556677899999999999987766666776 444555565555543
No 228
>PRK13327 pantothenate kinase; Reviewed
Probab=33.34 E-value=2.2e+02 Score=28.83 Aligned_cols=63 Identities=19% Similarity=0.080 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhc
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 563 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~ 563 (634)
.++-|++..+..+++.+++.-.+.-+|+++||.+ +++++.+.. ... .++-...|-+++|..+.
T Consensus 178 G~~~~~~~~I~~~i~~~~~~~~~~~~vilTGG~A------~~l~~~l~~-~~~--~p~LvL~GL~~~a~~~~ 240 (242)
T PRK13327 178 GCDGAAVALIERSLQHAHRSLGQPVRLLVHGGGA------PPLLPLLPD-AEF--RPALVLDGLATWATAAA 240 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCH------HHHHHhCCC-CEE--ccCcHHHHHHHHHHhcc
Confidence 5556666666666666654322234799999987 345555533 222 46778899999887664
No 229
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=32.45 E-value=1.2e+02 Score=29.65 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.8
Q ss_pred EEEEecCCcccEEEEEcCCC
Q 006707 57 FLGVDVGTGSARAGLFDESG 76 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g 76 (634)
+|.||+|-|++|..++|.+.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 57899999999999999763
No 230
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=32.25 E-value=1.9e+02 Score=26.20 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.0
Q ss_pred EEEecCCcccEEEEEcCCCcE
Q 006707 58 LGVDVGTGSARAGLFDESGKL 78 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~v 78 (634)
||||+|+..+=.++-|..+.+
T Consensus 1 laiD~G~kriGvA~~d~~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE
Confidence 689999999999998887744
No 231
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=31.66 E-value=33 Score=41.17 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.5
Q ss_pred cEEEEEecCCcccEEEEEcCCC
Q 006707 55 SVFLGVDVGTGSARAGLFDESG 76 (634)
Q Consensus 55 ~~~LGIDiGTtsiKavl~d~~g 76 (634)
+|+||+||||+||==+|+|.+-
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~ 22 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDY 22 (805)
T ss_pred CceeEEeecccceeEEEEeccc
Confidence 4789999999999999999664
No 232
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=31.06 E-value=1.7e+02 Score=32.16 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCC-CCHHHHHHHHHhhC-Cceec
Q 006707 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG-CPIIL 544 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg-~pV~~ 544 (634)
-++|..+|+++..+-.+-. .+..++-|+++||.. .++.+++.+.+-++ .-|.+
T Consensus 304 lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~~lGi~l 359 (404)
T TIGR00016 304 LAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALEFLGFEL 359 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhhhcCcee
Confidence 5889999999988877654 455789999999998 78888877766654 33433
No 233
>PRK00292 glk glucokinase; Provisional
Probab=30.65 E-value=1.1e+02 Score=32.19 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=30.0
Q ss_pred CCcc-EEEEecCCC-CC-HHHHH-----H------HHHh-hCCceeccCCCChhhHHHHHHHH
Q 006707 513 HKID-TLLACGGLA-KN-PLFLQ-----Q------HADI-IGCPIILPRENESVLLGAAILGA 560 (634)
Q Consensus 513 ~~~~-~I~~~GG~a-~s-~~~~Q-----i------~Adv-lg~pV~~~~~~ea~alGAA~lA~ 560 (634)
..++ .|++.||.+ ++ +.+.. . ..+. -..||+.....++..+|||.++.
T Consensus 252 ~~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa~~~~ 314 (316)
T PRK00292 252 LGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAGAYLR 314 (316)
T ss_pred hcCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHHHHHh
Confidence 3455 788888876 33 33222 1 1223 25677766667899999998765
No 234
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=30.61 E-value=31 Score=36.60 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=17.5
Q ss_pred EEEecCCcccEEEEEcCCCcEEE
Q 006707 58 LGVDVGTGSARAGLFDESGKLLG 80 (634)
Q Consensus 58 LGIDiGTtsiKavl~d~~g~vl~ 80 (634)
+|||+||+++++... .+|.++.
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~ 27 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLN 27 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEc
Confidence 799999999999775 4565554
No 235
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.16 E-value=1.4e+02 Score=30.67 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=30.7
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHH
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAI 106 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~ 106 (634)
.|.||+|+..+-++++|++ ++.+.-.+.++ -.+|+.+-+-+
T Consensus 229 alvVd~GngHttaalvded-RI~gv~EHHT~--------~Lspekled~I 269 (342)
T COG4012 229 ALVVDYGNGHTTAALVDED-RIVGVYEHHTI--------RLSPEKLEDQI 269 (342)
T ss_pred eEEEEccCCceEEEEecCC-eEEEEeecccc--------cCCHHHHHHHH
Confidence 6889999999999999988 88877665554 34665554433
No 236
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=30.12 E-value=1.5e+02 Score=27.75 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=32.0
Q ss_pred EEEEecCCcccEEEEEcCCCcE---EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 006707 57 FLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~v---l~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~ 117 (634)
+||||-|++++=-++++.+++. +.......+ + ..+..+=+..+.+.+.++++..
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~----~---~~~~~~rl~~I~~~l~~~i~~~ 58 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTS----S---DAPLPSRLKTIYDGLNEVIDQF 58 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECC----C---CCCHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999854432 222222222 1 1122333455666777777654
No 237
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=30.05 E-value=1.6e+02 Score=32.29 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCccEEEEecCCC-CCHHHHHHHHHhhC-Cceec
Q 006707 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG-CPIIL 544 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~-~g~~~~~I~~~GG~a-~s~~~~Qi~Advlg-~pV~~ 544 (634)
-++|..+|+++..+-.|-. ....++-|+++||.. +++.+++.+.+-+. +-|.+
T Consensus 300 lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~~lGi~l 355 (402)
T PRK00180 300 LALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLEFLGIEL 355 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhhhcCeee
Confidence 5889999999988877754 435789999999988 88888887776654 34444
No 238
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=30.04 E-value=61 Score=35.01 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=22.7
Q ss_pred EEEEEecCCcccEEEEEc-CCCcEEEEEE
Q 006707 56 VFLGVDVGTGSARAGLFD-ESGKLLGSAS 83 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d-~~g~vl~~~~ 83 (634)
.+|.|..|+||+|..+|| .+++++.+.-
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~Gl 30 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASGL 30 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhhh
Confidence 478999999999999999 4566666543
No 239
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=30.00 E-value=34 Score=39.59 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.1
Q ss_pred EEEEecCCcccEEEEEcC
Q 006707 57 FLGVDVGTGSARAGLFDE 74 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~ 74 (634)
++|||+|||+.++++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 479999999999999974
No 240
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=28.98 E-value=1.3e+02 Score=31.04 Aligned_cols=41 Identities=34% Similarity=0.466 Sum_probs=32.3
Q ss_pred EEEecCCcccEEEEEc-CCCcEEEEEEeeeccccCCCccccCHHHHHH
Q 006707 58 LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWH 104 (634)
Q Consensus 58 LGIDiGTtsiKavl~d-~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~ 104 (634)
+|||-||.|.-+.-|| +.|+++.....+... ++.+|.-+.+
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rde------Vtk~p~iiv~ 42 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDE------VTKSPRIIVD 42 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHH------hccCchHHHH
Confidence 4899999999999888 679999887777653 5677766553
No 241
>PLN02596 hexokinase-like
Probab=28.85 E-value=1.2e+02 Score=34.09 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=51.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCC---CCccEEEEecCCC-CCHHHHHHH----HHhhC--
Q 006707 475 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-----HCNAHG---HKIDTLLACGGLA-KNPLFLQQH----ADIIG-- 539 (634)
Q Consensus 475 ~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~~~-----~l~~~g---~~~~~I~~~GG~a-~s~~~~Qi~----Advlg-- 539 (634)
+|+.. ++.++. +.+|.+.+.|.-.-.+... .+...| .+...|-+.|+.- +.|.+.+.+ .+++|
T Consensus 382 l~~~~-~~~~d~-~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~ 459 (490)
T PLN02596 382 FGITD-STPMAR-EVVAEVCDIVAERGARLAGAGIVGIIKKLGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSE 459 (490)
T ss_pred cCCCC-CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcc
Confidence 45532 334443 3667777777655444332 223333 2234566778764 566665444 44554
Q ss_pred --CceeccCCCChhhHHHHHHHHhhcCC
Q 006707 540 --CPIILPRENESVLLGAAILGAVAAKR 565 (634)
Q Consensus 540 --~pV~~~~~~ea~alGAA~lA~~~~g~ 565 (634)
.+|.+....+.+.+|||++|+.....
T Consensus 460 ~~~~i~~~~s~DGSG~GAAl~AA~~~~~ 487 (490)
T PLN02596 460 LSDNVVIEHSHGGSGAGALFLAACQTGE 487 (490)
T ss_pred cCCcEEEEEccCchhHHHHHHHHhhccC
Confidence 25666557889999999999986543
No 242
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=26.60 E-value=93 Score=34.06 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=22.3
Q ss_pred EEEEecCCcccEEEEEcC-C-CcEEEEEEe
Q 006707 57 FLGVDVGTGSARAGLFDE-S-GKLLGSASS 84 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~-~-g~vl~~~~~ 84 (634)
+|.|..|+||+|..+||. + .+++.....
T Consensus 6 iLvlN~GSSSlKf~lf~~~~~~~~l~~G~~ 35 (404)
T TIGR00016 6 ILVINAGSSSLKFALFDYTNGETVLLSGLA 35 (404)
T ss_pred EEEEECChHhheEEEEecCCCCceEEEEEE
Confidence 899999999999999994 3 466655443
No 243
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=26.37 E-value=4.1e+02 Score=28.29 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCC-CHHHHHHHHHhhC
Q 006707 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHADIIG 539 (634)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~-s~~~~Qi~Advlg 539 (634)
+.++++++ ||++--|..++-++.. |......+++|+..|-..| ++.-|..+|=..+
T Consensus 274 ~~s~eDia---~SlL~mIsnNIGqiAy-l~A~~~ni~rV~FgG~fiR~~~itM~tLsyAi~ 330 (371)
T KOG2201|consen 274 SVSKEDIA---RSLLRMISNNIGQIAY-LCALNENIKRVYFGGFFIRGHPITMKTLSYAIN 330 (371)
T ss_pred ccChHHHH---HHHHHHHHhhHHHHHH-HHHHHhCccEEEEeeeEEecCceehHHHHHHHH
Confidence 35678865 5999999999887764 4444457899999998765 6788888887765
No 244
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=26.32 E-value=4.7e+02 Score=24.40 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=34.3
Q ss_pred EEEEEecCCcc-----cEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 006707 56 VFLGVDVGTGS-----ARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVD 120 (634)
Q Consensus 56 ~~LGIDiGTts-----iKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~~~~l~~~l~~~~~~ 120 (634)
-+|.||+.|++ +-=++++ +++++-..-...+ -..++-+=-+.+.+.|+.++++.+..
T Consensus 3 ~~LslD~STs~~~~~gTG~A~~~-~~~~~~~si~~~~-------k~Ks~~ER~k~ias~Lk~ii~~~d~~ 64 (159)
T PF07066_consen 3 KVLSLDFSTSSKKGEGTGWAFFK-GSDLVVGSIKAKH-------KSKSFFERAKSIASELKTIIQKYDLK 64 (159)
T ss_pred eeEEEEEecccCCCCCceeEEec-CCeEEEeeeeecC-------cccCHHHHHHHHHHHHHHHHHHhCCC
Confidence 47999999998 6667777 4444333222222 12344444456667777778776543
No 245
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=25.32 E-value=86 Score=28.70 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEEecCCcccEEEEEcCCCcE
Q 006707 56 VFLGVDVGTGSARAGLFDESGKL 78 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~v 78 (634)
.+||||+|+..+=.++-|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 47999999999999999987753
No 246
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=25.24 E-value=1.5e+02 Score=31.97 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=48.5
Q ss_pred EEEEEecCCc--ccEEEEEcCCC-----cEEEEEEeeeccc------c--CCCccccCHHH-------HHHHHHHHHHHH
Q 006707 56 VFLGVDVGTG--SARAGLFDESG-----KLLGSASSPIQIW------K--EGDCIEQSSTD-------IWHAICAAVDSA 113 (634)
Q Consensus 56 ~~LGIDiGTt--siKavl~d~~g-----~vl~~~~~~~~~~------~--~~g~~eqdp~~-------~~~a~~~~l~~~ 113 (634)
++||+=-||| ++-+++++.+| +++...+++||.. . .+.. -++++ +=+...++++++
T Consensus 3 ~~iGlMSGTSlDGiD~alv~~~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~~--~~~~~l~~l~~~lg~~~a~av~~~ 80 (365)
T PRK09585 3 RYIGLMSGTSLDGVDAALVEIDGEGTKVELLASATVPYPDELRAALLALLQGGA--DELERLAELDTALGRLFAEAVNAL 80 (365)
T ss_pred eEEEeccccChhhhhEEEEEEeCCCcceEEeeeeEeeCCHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888887 47777887544 3556667777531 1 1111 11222 233455777888
Q ss_pred HHHcCCCCCCeEEEEecCC
Q 006707 114 CSLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 114 l~~~~~~~~~I~aIgis~~ 132 (634)
+++.+++..+|.+||..+|
T Consensus 81 ~~~~~l~~~~id~IgsHGQ 99 (365)
T PRK09585 81 LAEAGLSPEDIDAIGSHGQ 99 (365)
T ss_pred HHHcCCCccCccEEEeCCc
Confidence 8888998999999999775
No 247
>PRK13326 pantothenate kinase; Reviewed
Probab=25.22 E-value=3e+02 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEE
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGS 81 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~ 81 (634)
..|.||+|-|++|..+||. ++++..
T Consensus 7 ~~L~IDiGNT~ik~glf~~-~~l~~~ 31 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD-NKMQIF 31 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC-CEEEEE
Confidence 4789999999999999994 456553
No 248
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=25.21 E-value=55 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=14.1
Q ss_pred EEEEecCCcccEEEEEc-CCCc
Q 006707 57 FLGVDVGTGSARAGLFD-ESGK 77 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d-~~g~ 77 (634)
.+|||+||++++ +++ .+|.
T Consensus 6 ~~giDlGt~~~~--i~~~~~~~ 25 (335)
T PRK13929 6 EIGIDLGTANIL--VYSKNKGI 25 (335)
T ss_pred eEEEEcccccEE--EEECCCcE
Confidence 489999999997 354 4453
No 249
>PTZ00288 glucokinase 1; Provisional
Probab=24.89 E-value=2.6e+02 Score=30.76 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCccEEEEecCC-CCCHHHHH------HH-----------HHhh-CCceec-cCCCChhhHHHHHHHHhhc
Q 006707 513 HKIDTLLACGGL-AKNPLFLQ------QH-----------ADII-GCPIIL-PRENESVLLGAAILGAVAA 563 (634)
Q Consensus 513 ~~~~~I~~~GG~-a~s~~~~Q------i~-----------Advl-g~pV~~-~~~~ea~alGAA~lA~~~~ 563 (634)
..++.|++.||+ .++..+.+ .+ .+.+ .+||++ ....+...+|||..|...+
T Consensus 322 l~P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 322 FLPLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred HCCCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHhh
Confidence 345568888866 45544332 11 3333 479988 6778899999999887644
No 250
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=24.26 E-value=3.7e+02 Score=28.31 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=27.3
Q ss_pred CccEEEEecCCCCCHHHHHHHHHhhCC---ceeccCCCC-hhhHHH
Q 006707 514 KIDTLLACGGLAKNPLFLQQHADIIGC---PIILPRENE-SVLLGA 555 (634)
Q Consensus 514 ~~~~I~~~GG~a~s~~~~Qi~Advlg~---pV~~~~~~e-a~alGA 555 (634)
..++|+++||||. ++...+.+.++. .+.+++.++ |-+.|-
T Consensus 272 ~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~ 315 (318)
T PF06406_consen 272 DIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGF 315 (318)
T ss_dssp S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHH
T ss_pred cCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHH
Confidence 5689999999985 778888888874 677777665 445554
No 251
>PRK13322 pantothenate kinase; Reviewed
Probab=23.91 E-value=65 Score=32.75 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=0.0
Q ss_pred EEEEecCCcccEEEEEcCCCcEE
Q 006707 57 FLGVDVGTGSARAGLFDESGKLL 79 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl 79 (634)
+|.||+|-|++|..++|.+++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~~~~~~ 24 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDNGGQII 24 (246)
T ss_pred EEEEEeCCCcEEEEEEcCCCchh
No 252
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=23.64 E-value=1e+02 Score=32.17 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCcc--EEEEecCCCCCHHHHHHHHHhhCCceeccC-C-CChhhHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCN-AHGHKID--TLLACGGLAKNPLFLQQHADIIGCPIILPR-E-NESVLLGAAI 557 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~-~~g~~~~--~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~-~-~ea~alGAA~ 557 (634)
+++++-+...+...++.+. ..+..+. .+++.||++ +.+..-+|+.+|++..++. . .-+.|+|+|+
T Consensus 214 ~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 214 EGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--EEEE-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 4667666666666666552 2344444 355556655 6889999999999865544 3 4478888875
No 253
>PRK07058 acetate kinase; Provisional
Probab=23.38 E-value=2.4e+02 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.574 Sum_probs=25.1
Q ss_pred CCCcEEEEEecCCcccEEEEEcCC-C--cEEEEEE
Q 006707 52 RSRSVFLGVDVGTGSARAGLFDES-G--KLLGSAS 83 (634)
Q Consensus 52 m~~~~~LGIDiGTtsiKavl~d~~-g--~vl~~~~ 83 (634)
|+++++|.|..|+||+|..|||.+ . +++....
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G~ 35 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKGD 35 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEEE
Confidence 456899999999999999999953 3 4555544
No 254
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=23.36 E-value=4.1e+02 Score=26.25 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=40.8
Q ss_pred cEEEEEecCCc-----ccEE-EEEc-CCCcEEEEEEeeecc-cc-CCCccccCHHHHHHHHHHH--HHHHHHHcCCCCCC
Q 006707 55 SVFLGVDVGTG-----SARA-GLFD-ESGKLLGSASSPIQI-WK-EGDCIEQSSTDIWHAICAA--VDSACSLANVDGEE 123 (634)
Q Consensus 55 ~~~LGIDiGTt-----siKa-vl~d-~~g~vl~~~~~~~~~-~~-~~g~~eqdp~~~~~a~~~~--l~~~l~~~~~~~~~ 123 (634)
+++.|+|+.-. .+-+ ++++ .+++++......++. .+ .|| +-++.++ +.+++++..
T Consensus 26 ~~I~gvDiS~~~~~~~~vaa~Vv~~~~~~~~~~~~~~~~~~~~PYIPG---------~LafRE~p~l~~~~~~l~----- 91 (208)
T cd06559 26 RLVAGVDVSYKKDGDLAVAAAVVLDYPDLEVVETAVAVGEVTFPYIPG---------LLAFREGPPLLEALEKLK----- 91 (208)
T ss_pred cEEEEEEeeeccCCCeEEEEEEEEECCCCcEEEEEEEEEecCCCCcch---------hHHHhhHHHHHHHHHhCC-----
Confidence 47889999644 2223 3444 389999888887764 33 455 2344444 556665532
Q ss_pred eEEEEecCCceeEEEcCCCC
Q 006707 124 VKGVGFAATCSLVAVDADGS 143 (634)
Q Consensus 124 I~aIgis~~~~~V~~d~~G~ 143 (634)
....++++|-+|.
T Consensus 92 -------~~PDlilVDG~G~ 104 (208)
T cd06559 92 -------TKPDLLLVDGHGI 104 (208)
T ss_pred -------CCCCEEEEeCCcc
Confidence 1255677886664
No 255
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=23.27 E-value=1.3e+02 Score=32.64 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=45.3
Q ss_pred cEEEEEecCCc--ccEEEEEcCC---CcEEEEEEeeeccc------c--CCCccccCHH-------HHHHHHHHHHHHHH
Q 006707 55 SVFLGVDVGTG--SARAGLFDES---GKLLGSASSPIQIW------K--EGDCIEQSST-------DIWHAICAAVDSAC 114 (634)
Q Consensus 55 ~~~LGIDiGTt--siKavl~d~~---g~vl~~~~~~~~~~------~--~~g~~eqdp~-------~~~~a~~~~l~~~l 114 (634)
+++||+=-||| ++-+++++-+ -+++...+.+||.. . .+.. .++. ++=+...+++++++
T Consensus 1 ~~~iGlMSGTSlDGiD~alv~~~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~~--~~~~~~~~l~~~lg~~~a~av~~~l 78 (364)
T PF03702_consen 1 QLVIGLMSGTSLDGIDAALVEFDGWRIELLAFHSFPYPSELRERLLALSRPAA--SSLDELCELDRELGELFADAVNQFL 78 (364)
T ss_dssp -EEEEEEE-TT-SEEEEEEEEESSSSEEEEEEEEEE--HHHHHHHHHCCSTTC--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccCCHHhhhheeEEEECCceEEeeeEeecCCHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999997 4888888854 36777777888631 1 2221 1122 22234557778888
Q ss_pred HHcCCCCCCeEEEEecCC
Q 006707 115 SLANVDGEEVKGVGFAAT 132 (634)
Q Consensus 115 ~~~~~~~~~I~aIgis~~ 132 (634)
++.+++.++|.+||.-+|
T Consensus 79 ~~~~i~~~~I~~IgsHGQ 96 (364)
T PF03702_consen 79 KKNGISPSDIDLIGSHGQ 96 (364)
T ss_dssp HHCT--GGGEEEEEE--E
T ss_pred HHcCCCcccccEEEeCCc
Confidence 888888899999998664
No 256
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.01 E-value=2.8e+02 Score=28.85 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEec-CCCCC-HHHHHHHHHhhC---------CceeccCC--CChhhHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACG-GLAKN-PLFLQQHADIIG---------CPIILPRE--NESVLLGAAI 557 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~G-G~a~s-~~~~Qi~Advlg---------~pV~~~~~--~ea~alGAA~ 557 (634)
+.++|-.+..+...+-.+... ..++.|++.| |.+.. +.+.+.+...+. .++..... .+++.+|||+
T Consensus 225 ~~~~~~~~~~la~~ianl~~~-~~P~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~ 303 (314)
T COG1940 225 KEVIERAADYLARGLANLINL-LDPEVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAAL 303 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHHH
Confidence 356666666666666655542 4678888888 65543 566655554321 12222221 4577788888
Q ss_pred HHHh
Q 006707 558 LGAV 561 (634)
Q Consensus 558 lA~~ 561 (634)
++..
T Consensus 304 ~~~~ 307 (314)
T COG1940 304 LALL 307 (314)
T ss_pred HHHH
Confidence 7654
No 257
>PRK09698 D-allose kinase; Provisional
Probab=22.83 E-value=3.3e+02 Score=28.05 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCH-HH----HHHHHHhhC-------CceeccC-CCChhhHHHHH
Q 006707 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP-LF----LQQHADIIG-------CPIILPR-ENESVLLGAAI 557 (634)
Q Consensus 491 rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~-~~----~Qi~Advlg-------~pV~~~~-~~ea~alGAA~ 557 (634)
+...+.++..+..++.. ..++.|++.|+.++.. .+ .+.+.+.+- .+|.... ..+++++|||.
T Consensus 218 ~~~~~~la~~l~~li~~-----ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~ 292 (302)
T PRK09698 218 QSLLENLARAIATSINL-----FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAI 292 (302)
T ss_pred HHHHHHHHHHHHHHHHH-----hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHH
Confidence 35556666666555443 3568888888877643 22 233333221 2344433 34578999998
Q ss_pred HHHh
Q 006707 558 LGAV 561 (634)
Q Consensus 558 lA~~ 561 (634)
++..
T Consensus 293 ~~~~ 296 (302)
T PRK09698 293 LAHQ 296 (302)
T ss_pred HHHH
Confidence 8753
No 258
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=2.2e+02 Score=30.51 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=41.3
Q ss_pred HHHHHHHHHHH----HHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhC---CceeccCCCChhhHHHHHHHHhhcC
Q 006707 492 ATVQGIAYGTR----HIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---CPIILPRENESVLLGAAILGAVAAK 564 (634)
Q Consensus 492 AvlEgia~~~r----~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg---~pV~~~~~~ea~alGAA~lA~~~~g 564 (634)
.+.+.++.++- +.++.+......++.++++||.|+|..+...+.+..+ .....+. ..-..=-++|+|..|+.
T Consensus 279 ~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp-~~lCsDNgiMIaw~Gie 357 (405)
T KOG2707|consen 279 SLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPP-PSLCSDNGIMIAWTGIE 357 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCC-hhhcCCcchhhhhHHHH
Confidence 44454444433 3333333334456789999999999999988887754 3333322 22222234566666554
Q ss_pred CC
Q 006707 565 RY 566 (634)
Q Consensus 565 ~~ 566 (634)
.+
T Consensus 358 ~l 359 (405)
T KOG2707|consen 358 ML 359 (405)
T ss_pred HH
Confidence 43
No 259
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=22.52 E-value=2.5e+02 Score=29.32 Aligned_cols=30 Identities=30% Similarity=0.164 Sum_probs=24.8
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEEEEeeec
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQ 87 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~ 87 (634)
.+.+|+|+.|+..++++ +++++...+.|+-
T Consensus 127 ~~v~DiGGGSte~~~~~-~~~~~~~~Sl~lG 156 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK-DFEPGEGVSLPLG 156 (300)
T ss_pred cEEEEecCCeEEEEEec-CCCEeEEEEEccc
Confidence 38899999999999988 5678777777763
No 260
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=22.45 E-value=3.3e+02 Score=28.61 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCC-HHHHHHHHHhhCCceeccCCCChhhHHHHHHHHhhcCC
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 565 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s-~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~~~g~ 565 (634)
-+++-.+..+...++.+. ......++.+.||.++| +.|.-++=..+..|. ..-+.-||.++|...++.
T Consensus 227 ~Il~~aa~~i~~~~~~l~-~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A~~~~~~ 295 (301)
T COG2971 227 RILKEAAAYIATLLEALS-IFNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLALGRFGE 295 (301)
T ss_pred HHHHHHHHHHHHHHHHHh-cccCCceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHHHHhhhh
Confidence 577777777888887775 23456789999999876 888877766666655 234578888888766543
No 261
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=22.31 E-value=2.1e+02 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=32.9
Q ss_pred EEEEEecCCcccEEEEEcCCCcEEEEEEeeeccccCCCccccCHHHHHHHH
Q 006707 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAI 106 (634)
Q Consensus 56 ~~LGIDiGTtsiKavl~d~~g~vl~~~~~~~~~~~~~g~~eqdp~~~~~a~ 106 (634)
=++.||+|.+.+-++++ .+++|.+...+.+. ..+++.+++-+
T Consensus 168 ~~~~vniGN~HTlaa~v-~~~rI~GvfEHHT~--------~l~~~kL~~~l 209 (254)
T PF08735_consen 168 GIIVVNIGNGHTLAALV-KDGRIYGVFEHHTG--------MLTPEKLEEYL 209 (254)
T ss_pred CeEEEEeCCccEEEEEE-eCCEEEEEEecccC--------CCCHHHHHHHH
Confidence 47899999999999999 68888887666654 45787776544
No 262
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=21.73 E-value=1.8e+02 Score=31.72 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhH---------------
Q 006707 489 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLL--------------- 553 (634)
Q Consensus 489 ~~rAvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~al--------------- 553 (634)
+++.+..|+...+...+..+++...+++.|+.+||.. .-+.|-..|+|+.+..+.|..+.
T Consensus 68 ~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~ 142 (396)
T TIGR03492 68 LLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-----PLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHR 142 (396)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-----HHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhc
Confidence 5668889899998888888887655789999999987 56778888999998555554333
Q ss_pred --HHH--------HHHHhhcCCCCCHHHHHHHhhh
Q 006707 554 --GAA--------ILGAVAAKRYSSLIEAMKAMNA 578 (634)
Q Consensus 554 --GAA--------~lA~~~~g~~~~~~e~~~~~~~ 578 (634)
|-+ +++..+--+|..++++.+.+.+
T Consensus 143 ~~G~~~~p~e~n~l~~~~a~~v~~~~~~t~~~l~~ 177 (396)
T TIGR03492 143 LEGSLYLPWERWLMRSRRCLAVFVRDRLTARDLRR 177 (396)
T ss_pred cCCCccCHHHHHHhhchhhCEEeCCCHHHHHHHHH
Confidence 443 4455555666555555555543
No 263
>PRK13321 pantothenate kinase; Reviewed
Probab=21.71 E-value=4.1e+02 Score=26.97 Aligned_cols=62 Identities=24% Similarity=0.176 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccEEEEecCCCCCHHHHHHHHHhhCCceeccCCCChhhHHHHHHHHh
Q 006707 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAV 561 (634)
Q Consensus 492 AvlEgia~~~r~~~~~l~~~g~~~~~I~~~GG~a~s~~~~Qi~Advlg~pV~~~~~~ea~alGAA~lA~~ 561 (634)
.++.|.+..+...++.+++.-...-.|+++||.+ .+++..+..+..+ .++-...|-+.++..
T Consensus 192 G~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGG~a------~~l~~~~~~~~~~--~~~Lvl~GL~~~~~~ 253 (256)
T PRK13321 192 GLYYGYAGLVEGIVARIKAELGGPPRVIATGGFA------SLIAKESRCFDHV--DPDLLLEGLRILYQM 253 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcH------HHHhhcCCCccEE--CCCcHHHHHHHHHHh
Confidence 6666666667777777654322234799999976 3455555555443 356778888777653
No 264
>PLN02362 hexokinase
Probab=21.60 E-value=5.4e+02 Score=29.23 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=32.7
Q ss_pred EEEEecCCC-CCHHHHHHHHHh----hCC----ceeccCCCChhhHHHHHHHHhhcC
Q 006707 517 TLLACGGLA-KNPLFLQQHADI----IGC----PIILPRENESVLLGAAILGAVAAK 564 (634)
Q Consensus 517 ~I~~~GG~a-~s~~~~Qi~Adv----lg~----pV~~~~~~ea~alGAA~lA~~~~g 564 (634)
.|-+.||.- +.+.+.+.+.+. ++. .|.+....+++.+|||++|+.+..
T Consensus 444 ~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~~ 500 (509)
T PLN02362 444 VVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYSS 500 (509)
T ss_pred EEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHHh
Confidence 555667764 566666555544 432 455556788999999999998743
No 265
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=21.54 E-value=61 Score=34.20 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=14.4
Q ss_pred EEEecCCcccEEEEEc
Q 006707 58 LGVDVGTGSARAGLFD 73 (634)
Q Consensus 58 LGIDiGTtsiKavl~d 73 (634)
+|||+||+++|+...+
T Consensus 11 vgiDlGt~~t~i~~~~ 26 (335)
T PRK13930 11 IGIDLGTANTLVYVKG 26 (335)
T ss_pred eEEEcCCCcEEEEECC
Confidence 8999999999998863
No 266
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=21.19 E-value=75 Score=37.42 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=18.3
Q ss_pred CCCcEEEEEecCCcccEEEEEc
Q 006707 52 RSRSVFLGVDVGTGSARAGLFD 73 (634)
Q Consensus 52 m~~~~~LGIDiGTtsiKavl~d 73 (634)
|.++|+||+||||.|+==+++.
T Consensus 1 ~~~~yilglDIGi~SVGWAvve 22 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVE 22 (1088)
T ss_pred CCcceEEEeeccccceeeEEee
Confidence 5568999999999999866664
No 267
>PRK07157 acetate kinase; Provisional
Probab=21.02 E-value=2.8e+02 Score=30.38 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=22.6
Q ss_pred EEEEecCCcccEEEEEcC-CCcEEEEEEe
Q 006707 57 FLGVDVGTGSARAGLFDE-SGKLLGSASS 84 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~-~g~vl~~~~~ 84 (634)
+|.|..|+||+|..|||. +.+++.....
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~~ 33 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASGLA 33 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEEEE
Confidence 899999999999999994 4466665543
No 268
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=20.90 E-value=53 Score=34.91 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=16.2
Q ss_pred EEEEecCCcccEEEEEcCCCcEEEE
Q 006707 57 FLGVDVGTGSARAGLFDESGKLLGS 81 (634)
Q Consensus 57 ~LGIDiGTtsiKavl~d~~g~vl~~ 81 (634)
.+|||+||+++++..- .+|.++.+
T Consensus 3 ~igIDLGT~~t~i~~~-~~Giv~~e 26 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVK-GKGIVLNE 26 (326)
T ss_dssp EEEEEE-SSEEEEEET-TTEEEEEE
T ss_pred ceEEecCcccEEEEEC-CCCEEEec
Confidence 4899999999887432 36655554
No 269
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=20.08 E-value=1e+02 Score=25.30 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHcCCCCcccccccccCcccccCCCcccCCCCHHHHHHcCCCCCC
Q 006707 265 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 313 (634)
Q Consensus 265 ~~~L~~~gi~~~l~~~lp~l~~~~~~~g~~iG~~i~~~~a~~~GL~~g~ 313 (634)
+++|+..++.+ .+||+|. .++.+++.+|+..|-
T Consensus 21 ~~lL~~y~i~~---~qLP~I~-------------~~DPv~r~~g~k~Gd 53 (74)
T PF01191_consen 21 KELLKKYNIKP---EQLPKIL-------------SSDPVARYLGAKPGD 53 (74)
T ss_dssp HHHHHHTT--T---TCSSEEE-------------TTSHHHHHTT--TTS
T ss_pred HHHHHHhCCCh---hhCCccc-------------ccChhhhhcCCCCCC
Confidence 46888889876 4678654 566777888887764
Done!