Query 006709
Match_columns 634
No_of_seqs 596 out of 2774
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 13:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 2.4E-98 5E-103 829.5 52.0 508 83-621 1-515 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 2.3E-76 5E-81 648.7 47.2 428 83-620 1-429 (429)
3 PRK05279 N-acetylglutamate syn 100.0 2.4E-73 5.3E-78 626.8 47.8 433 81-620 7-441 (441)
4 COG0548 ArgB Acetylglutamate k 100.0 1E-52 2.2E-57 428.2 29.4 260 98-445 1-265 (265)
5 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 1.6E-51 3.5E-56 428.5 30.2 278 82-443 1-280 (280)
6 CHL00202 argB acetylglutamate 100.0 1.1E-50 2.4E-55 423.0 31.8 274 80-444 4-283 (284)
7 PLN02512 acetylglutamate kinas 100.0 4.5E-48 9.8E-53 407.7 31.9 276 79-444 27-308 (309)
8 PRK00942 acetylglutamate kinas 100.0 6.8E-47 1.5E-51 394.3 30.6 277 80-446 4-283 (283)
9 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 9.2E-46 2E-50 385.2 30.0 269 87-443 2-279 (279)
10 KOG2436 Acetylglutamate kinase 100.0 8.6E-48 1.9E-52 412.5 14.0 438 79-535 74-519 (520)
11 PRK04531 acetylglutamate kinas 100.0 8.8E-42 1.9E-46 369.9 32.1 312 75-535 18-332 (398)
12 cd04236 AAK_NAGS-Urea AAK_NAGS 100.0 1.9E-42 4.2E-47 357.2 22.8 263 64-443 2-271 (271)
13 cd04252 AAK_NAGK-fArgBP AAK_NA 100.0 1.5E-41 3.3E-46 348.0 28.2 244 102-443 1-248 (248)
14 cd04238 AAK_NAGK-like AAK_NAGK 100.0 1.5E-40 3.3E-45 341.7 27.4 253 102-443 1-256 (256)
15 PRK14058 acetylglutamate/acety 100.0 2.2E-39 4.7E-44 335.6 28.3 250 101-445 1-267 (268)
16 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 5.4E-39 1.2E-43 329.6 26.6 248 102-443 1-252 (252)
17 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 8.3E-39 1.8E-43 329.4 27.0 244 102-443 1-257 (257)
18 PRK12352 putative carbamate ki 100.0 1.2E-38 2.7E-43 335.2 25.3 259 100-445 3-315 (316)
19 TIGR00761 argB acetylglutamate 100.0 4.2E-37 9.1E-42 311.6 25.8 228 101-420 1-231 (231)
20 cd04241 AAK_FomA-like AAK_FomA 100.0 1.5E-33 3.3E-38 289.0 22.7 238 101-443 1-252 (252)
21 PRK12353 putative amino acid k 100.0 9.8E-31 2.1E-35 276.3 25.5 261 98-444 1-313 (314)
22 PRK12686 carbamate kinase; Rev 100.0 3.7E-31 8E-36 277.3 21.9 255 99-444 2-311 (312)
23 PRK12454 carbamate kinase-like 100.0 6.9E-31 1.5E-35 274.8 23.4 258 99-445 2-313 (313)
24 COG0263 ProB Glutamate 5-kinas 100.0 3.8E-31 8.3E-36 275.8 19.8 239 99-447 6-261 (369)
25 cd02115 AAK Amino Acid Kinases 100.0 7E-31 1.5E-35 267.1 19.2 237 103-443 1-248 (248)
26 TIGR00746 arcC carbamate kinas 100.0 1.9E-29 4.1E-34 265.2 23.3 255 100-444 1-309 (310)
27 PF00696 AA_kinase: Amino acid 100.0 6.9E-29 1.5E-33 251.6 20.0 223 100-422 1-242 (242)
28 PRK09411 carbamate kinase; Rev 100.0 2.2E-28 4.7E-33 253.6 23.3 245 100-444 2-296 (297)
29 cd04235 AAK_CK AAK_CK: Carbama 100.0 3.2E-28 7E-33 255.0 22.4 253 101-444 1-308 (308)
30 PRK13402 gamma-glutamyl kinase 100.0 1.7E-28 3.7E-33 263.9 19.7 237 99-446 5-258 (368)
31 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 4.3E-28 9.4E-33 253.0 20.5 245 99-443 8-283 (284)
32 PRK05429 gamma-glutamyl kinase 100.0 1.6E-27 3.4E-32 257.6 23.6 238 99-446 8-262 (372)
33 PTZ00489 glutamate 5-kinase; P 100.0 1.4E-27 3.1E-32 246.4 22.2 233 99-445 8-259 (264)
34 PRK12354 carbamate kinase; Rev 100.0 7.5E-28 1.6E-32 251.4 19.8 250 101-446 2-301 (307)
35 COG0549 ArcC Carbamate kinase 100.0 3.9E-27 8.5E-32 239.0 22.8 257 100-444 1-311 (312)
36 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 2.5E-27 5.3E-32 243.4 21.4 235 101-444 1-251 (251)
37 PRK12314 gamma-glutamyl kinase 99.9 8E-27 1.7E-31 241.6 21.6 237 99-445 9-264 (266)
38 TIGR01027 proB glutamate 5-kin 99.9 2.1E-26 4.5E-31 248.1 20.4 237 100-445 1-253 (363)
39 KOG1154 Gamma-glutamyl kinase 99.9 4.1E-27 8.8E-32 232.2 12.8 245 99-445 9-275 (285)
40 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 3.1E-25 6.7E-30 226.2 23.2 189 101-316 1-202 (239)
41 cd04246 AAK_AK-DapG-like AAK_A 99.9 3.3E-25 7.1E-30 225.9 23.4 188 101-316 1-202 (239)
42 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 6.9E-25 1.5E-29 224.4 23.2 190 101-318 1-209 (244)
43 COG1608 Predicted archaeal kin 99.9 1.5E-24 3.4E-29 216.1 20.6 237 102-444 3-251 (252)
44 TIGR01092 P5CS delta l-pyrroli 99.9 3.2E-24 6.9E-29 249.0 20.7 251 99-449 7-279 (715)
45 PLN02418 delta-1-pyrroline-5-c 99.9 3.3E-23 7.1E-28 240.4 24.5 249 99-449 15-287 (718)
46 PRK00358 pyrH uridylate kinase 99.9 2.6E-22 5.6E-27 203.6 23.1 215 100-444 1-231 (231)
47 cd04234 AAK_AK AAK_AK: Amino A 99.9 9.5E-23 2.1E-27 206.5 18.7 176 101-317 1-190 (227)
48 cd04239 AAK_UMPK-like AAK_UMPK 99.9 3.1E-22 6.7E-27 202.9 22.1 214 101-444 1-229 (229)
49 PRK08210 aspartate kinase I; R 99.9 2.1E-22 4.6E-27 220.0 21.4 193 99-318 1-211 (403)
50 COG1246 ArgA N-acetylglutamate 99.9 1.3E-23 2.8E-28 197.6 10.1 147 449-620 1-148 (153)
51 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 1.6E-21 3.4E-26 201.6 22.5 212 100-444 31-262 (262)
52 PRK14558 pyrH uridylate kinase 99.9 1.9E-21 4.1E-26 197.5 22.4 216 100-446 1-231 (231)
53 PRK06635 aspartate kinase; Rev 99.9 2.2E-21 4.8E-26 212.0 23.3 191 99-317 1-205 (404)
54 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 2.1E-21 4.5E-26 197.2 20.3 215 100-444 1-231 (231)
55 PRK08841 aspartate kinase; Val 99.9 1.1E-20 2.3E-25 205.8 24.3 193 99-317 1-205 (392)
56 TIGR00656 asp_kin_monofn aspar 99.9 8.4E-21 1.8E-25 207.2 21.3 192 101-318 2-207 (401)
57 TIGR02075 pyrH_bact uridylate 99.9 4E-20 8.8E-25 188.1 22.7 215 100-444 2-233 (233)
58 TIGR02076 pyrH_arch uridylate 99.9 4.8E-20 1E-24 185.9 21.6 209 102-443 1-220 (221)
59 PRK07431 aspartate kinase; Pro 99.9 4.3E-20 9.4E-25 211.0 23.5 192 99-317 1-207 (587)
60 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.8 7E-20 1.5E-24 184.8 21.2 209 101-443 1-220 (221)
61 cd04240 AAK_UC AAK_UC: Unchara 99.8 1.3E-18 2.8E-23 173.7 19.3 149 103-312 1-157 (203)
62 PRK14557 pyrH uridylate kinase 99.8 1.4E-17 3.1E-22 170.9 23.7 217 99-446 4-239 (247)
63 TIGR00657 asp_kinases aspartat 99.8 2.2E-18 4.9E-23 190.6 19.0 196 101-317 2-245 (441)
64 PRK14556 pyrH uridylate kinase 99.7 1.4E-16 3.1E-21 162.7 22.0 219 99-445 15-248 (249)
65 cd04244 AAK_AK-LysC-like AAK_A 99.7 1.2E-15 2.6E-20 160.7 17.6 198 101-317 1-261 (298)
66 PRK06291 aspartate kinase; Pro 99.6 1E-14 2.2E-19 162.6 19.7 194 101-316 2-264 (465)
67 PRK07757 acetyltransferase; Pr 99.6 2.6E-14 5.7E-19 134.2 15.7 131 449-606 2-132 (152)
68 PRK08373 aspartate kinase; Val 99.6 1.3E-13 2.9E-18 147.3 22.8 195 98-316 2-242 (341)
69 PRK10146 aminoalkylphosphonic 99.6 1E-14 2.2E-19 135.0 11.8 125 449-598 4-140 (144)
70 COG0528 PyrH Uridylate kinase 99.6 3.2E-13 6.9E-18 135.5 22.5 218 98-444 4-237 (238)
71 COG0527 LysC Aspartokinases [A 99.5 5.2E-13 1.1E-17 147.5 22.3 200 100-320 2-254 (447)
72 PTZ00330 acetyltransferase; Pr 99.5 1.3E-13 2.7E-18 128.2 13.0 125 449-598 7-143 (147)
73 PRK07922 N-acetylglutamate syn 99.5 2.9E-13 6.3E-18 131.1 15.0 126 449-601 6-132 (169)
74 PRK12308 bifunctional arginino 99.5 1.7E-13 3.7E-18 157.7 15.6 136 449-611 464-599 (614)
75 cd04259 AAK_AK-DapDC AAK_AK-Da 99.5 3.7E-12 8E-17 134.1 21.4 200 101-317 1-258 (295)
76 TIGR03827 GNAT_ablB putative b 99.5 1.4E-12 3E-17 135.2 15.9 122 449-596 116-245 (266)
77 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.4 7.7E-12 1.7E-16 131.7 19.2 192 102-317 2-257 (294)
78 PF13527 Acetyltransf_9: Acety 99.4 9.5E-13 2.1E-17 119.6 10.4 119 450-594 1-127 (127)
79 TIGR02078 AspKin_pair Pyrococc 99.4 1.2E-11 2.5E-16 131.8 19.4 78 238-315 144-231 (327)
80 cd04243 AAK_AK-HSDH-like AAK_A 99.4 1E-11 2.3E-16 130.6 18.5 78 241-318 168-257 (293)
81 PHA00673 acetyltransferase dom 99.4 4.5E-12 9.9E-17 121.0 14.0 120 452-596 10-146 (154)
82 PRK03624 putative acetyltransf 99.4 4.4E-12 9.6E-17 115.4 12.3 119 449-597 3-131 (140)
83 PRK09831 putative acyltransfer 99.4 5.9E-12 1.3E-16 118.3 13.3 114 450-598 2-128 (147)
84 PF13673 Acetyltransf_10: Acet 99.4 1E-11 2.3E-16 110.6 14.1 103 458-591 1-117 (117)
85 cd04245 AAK_AKiii-YclM-BS AAK_ 99.3 8.5E-11 1.8E-15 123.4 21.5 192 102-318 2-252 (288)
86 KOG3216 Diamine acetyltransfer 99.3 1E-11 2.3E-16 116.5 12.4 123 449-596 4-146 (163)
87 PF00583 Acetyltransf_1: Acety 99.3 1.2E-11 2.5E-16 103.7 10.9 75 493-592 1-83 (83)
88 PLN02706 glucosamine 6-phospha 99.3 7.2E-12 1.6E-16 117.4 10.7 122 449-598 7-146 (150)
89 TIGR02382 wecD_rffC TDP-D-fuco 99.3 2.2E-11 4.8E-16 119.8 13.7 122 449-596 44-185 (191)
90 PRK09491 rimI ribosomal-protei 99.3 3.2E-11 6.9E-16 112.6 13.9 117 449-596 2-125 (146)
91 COG1247 Sortase and related ac 99.3 3.7E-11 7.9E-16 116.4 13.9 123 449-597 2-144 (169)
92 TIGR02406 ectoine_EctA L-2,4-d 99.3 3E-11 6.6E-16 115.4 13.0 119 451-594 1-126 (157)
93 PRK09084 aspartate kinase III; 99.3 6.9E-11 1.5E-15 131.4 17.7 191 101-318 1-252 (448)
94 PF13420 Acetyltransf_4: Acety 99.3 6.2E-11 1.3E-15 111.2 14.7 120 451-596 1-139 (155)
95 PRK10975 TDP-fucosamine acetyl 99.3 4.6E-11 9.9E-16 117.6 14.4 125 448-598 46-190 (194)
96 PRK05925 aspartate kinase; Pro 99.3 6.1E-11 1.3E-15 131.3 16.7 192 99-317 1-242 (440)
97 PRK08961 bifunctional aspartat 99.3 5.5E-11 1.2E-15 141.8 17.3 203 99-317 7-267 (861)
98 PRK10140 putative acetyltransf 99.3 4.5E-11 9.7E-16 112.5 13.1 122 449-596 4-141 (162)
99 PF13508 Acetyltransf_7: Acety 99.2 9.6E-11 2.1E-15 98.6 11.4 75 489-593 4-79 (79)
100 cd04258 AAK_AKiii-LysC-EC AAK_ 99.2 4.7E-10 1E-14 118.1 18.9 71 249-319 176-257 (292)
101 TIGR01575 rimI ribosomal-prote 99.2 2.5E-10 5.5E-15 102.8 13.6 108 458-596 1-116 (131)
102 PF13523 Acetyltransf_8: Acety 99.2 1.1E-10 2.4E-15 109.7 11.4 126 451-601 1-146 (152)
103 PRK09436 thrA bifunctional asp 99.2 4.9E-10 1.1E-14 132.8 18.5 75 242-316 172-258 (819)
104 PRK09034 aspartate kinase; Rev 99.2 1.6E-09 3.5E-14 120.7 21.3 194 101-319 1-253 (454)
105 COG0456 RimI Acetyltransferase 99.2 2.9E-10 6.3E-15 108.7 13.1 123 446-597 9-155 (177)
106 PRK10314 putative acyltransfer 99.1 3.4E-10 7.5E-15 108.1 12.1 118 451-597 9-135 (153)
107 TIGR03103 trio_acet_GNAT GNAT- 99.1 4.3E-10 9.2E-15 128.0 14.8 120 449-597 83-218 (547)
108 PRK10514 putative acetyltransf 99.1 5.5E-10 1.2E-14 103.7 12.7 114 449-598 2-128 (145)
109 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.1 2.5E-09 5.5E-14 113.2 18.9 70 250-319 189-269 (306)
110 KOG3139 N-acetyltransferase [G 99.1 5.9E-10 1.3E-14 105.9 12.5 98 489-618 56-161 (165)
111 KOG3396 Glucosamine-phosphate 99.1 7.7E-10 1.7E-14 102.1 11.0 122 449-598 7-146 (150)
112 TIGR01686 FkbH FkbH-like domai 99.1 1.2E-09 2.6E-14 116.3 14.2 119 449-594 187-319 (320)
113 PLN02551 aspartokinase 99.1 5.8E-09 1.3E-13 117.8 19.6 197 100-319 52-312 (521)
114 COG3153 Predicted acetyltransf 99.0 3.3E-09 7.1E-14 103.1 14.2 138 448-622 3-152 (171)
115 PRK01346 hypothetical protein; 99.0 2.4E-09 5.2E-14 117.4 14.1 118 449-596 7-136 (411)
116 COG2054 Uncharacterized archae 99.0 1.3E-08 2.7E-13 98.5 16.0 65 249-313 91-162 (212)
117 TIGR03448 mycothiol_MshD mycot 99.0 4.5E-09 9.8E-14 109.4 14.0 114 452-596 4-128 (292)
118 PRK10562 putative acetyltransf 99.0 6.3E-09 1.4E-13 97.3 13.5 112 450-596 1-125 (145)
119 PHA01807 hypothetical protein 99.0 6.5E-09 1.4E-13 99.6 13.6 111 454-589 9-136 (153)
120 PRK13688 hypothetical protein; 99.0 1.8E-09 3.9E-14 103.8 9.7 108 448-597 17-134 (156)
121 TIGR03585 PseH pseudaminic aci 99.0 8.3E-09 1.8E-13 96.7 13.5 121 450-597 2-139 (156)
122 cd02169 Citrate_lyase_ligase C 99.0 2.2E-09 4.9E-14 113.2 10.2 76 489-595 7-83 (297)
123 PRK10151 ribosomal-protein-L7/ 98.9 1.8E-08 3.9E-13 97.4 15.0 123 449-597 11-156 (179)
124 PRK15130 spermidine N1-acetylt 98.9 1.1E-08 2.5E-13 99.4 13.5 121 450-596 8-145 (186)
125 TIGR03448 mycothiol_MshD mycot 98.9 1.5E-08 3.3E-13 105.4 15.3 122 450-596 151-288 (292)
126 PRK09466 metL bifunctional asp 98.9 2.6E-08 5.6E-13 117.9 15.1 197 99-320 10-265 (810)
127 PRK10809 ribosomal-protein-S5- 98.8 4.9E-08 1.1E-12 95.7 13.6 121 450-596 19-166 (194)
128 TIGR00124 cit_ly_ligase [citra 98.8 3E-08 6.4E-13 106.3 12.2 80 486-596 29-109 (332)
129 PF13302 Acetyltransf_3: Acety 98.8 1.1E-07 2.4E-12 87.2 12.5 117 450-592 3-142 (142)
130 KOG3235 Subunit of the major N 98.6 9.3E-08 2E-12 90.5 6.6 124 450-597 3-136 (193)
131 KOG3397 Acetyltransferases [Ge 98.4 1.1E-06 2.3E-11 84.5 8.3 78 494-596 63-141 (225)
132 PF08445 FR47: FR47-like prote 98.3 4.4E-06 9.6E-11 72.3 9.9 57 514-596 22-82 (86)
133 cd04301 NAT_SF N-Acyltransfera 98.3 3.6E-06 7.8E-11 64.6 8.4 62 491-577 2-64 (65)
134 COG2153 ElaA Predicted acyltra 98.3 2.9E-06 6.3E-11 79.7 9.2 89 486-599 48-139 (155)
135 KOG3138 Predicted N-acetyltran 98.2 1.2E-06 2.6E-11 86.3 5.5 122 449-596 17-152 (187)
136 KOG2488 Acetyltransferase (GNA 98.2 5.8E-06 1.2E-10 80.9 9.6 115 457-596 54-182 (202)
137 TIGR01211 ELP3 histone acetylt 98.2 7.4E-06 1.6E-10 92.8 10.7 85 489-598 413-518 (522)
138 KOG3234 Acetyltransferase, (GN 98.2 5.4E-06 1.2E-10 78.8 7.7 121 450-595 3-130 (173)
139 PF13718 GNAT_acetyltr_2: GNAT 98.1 4.8E-05 1E-09 75.8 13.0 112 479-620 14-195 (196)
140 COG3393 Predicted acetyltransf 98.1 1.6E-05 3.4E-10 81.7 9.3 78 493-596 182-262 (268)
141 COG3053 CitC Citrate lyase syn 98.0 3.4E-05 7.5E-10 79.9 10.6 111 448-596 3-115 (352)
142 PRK09181 aspartate kinase; Val 97.9 0.00037 8E-09 78.5 17.8 80 241-320 182-276 (475)
143 COG1670 RimL Acetyltransferase 97.9 0.00016 3.5E-09 68.6 13.0 76 497-598 77-160 (187)
144 PF14542 Acetyltransf_CG: GCN5 97.9 0.00012 2.5E-09 62.5 10.4 70 492-589 3-72 (78)
145 cd04248 AAK_AK-Ectoine AAK_AK- 97.9 0.00047 1E-08 73.1 16.3 71 250-320 189-270 (304)
146 COG3981 Predicted acetyltransf 97.6 0.00049 1.1E-08 66.7 11.0 82 489-596 70-159 (174)
147 COG1444 Predicted P-loop ATPas 97.6 0.00066 1.4E-08 79.4 13.0 132 457-624 437-614 (758)
148 PF12568 DUF3749: Acetyltransf 97.4 0.0024 5.3E-08 59.3 11.9 107 451-595 7-124 (128)
149 COG2388 Predicted acetyltransf 97.3 0.00099 2.2E-08 59.5 7.5 66 488-579 15-80 (99)
150 PF04768 DUF619: Protein of un 97.2 0.0009 1.9E-08 65.5 7.4 127 429-588 2-136 (170)
151 KOG4144 Arylalkylamine N-acety 97.2 0.00021 4.6E-09 67.9 2.9 122 449-598 12-163 (190)
152 COG0454 WecD Histone acetyltra 97.0 0.001 2.3E-08 54.7 5.0 44 519-591 87-130 (156)
153 PF12746 GNAT_acetyltran: GNAT 96.9 0.0086 1.9E-07 62.6 11.6 90 479-596 157-247 (265)
154 PF04958 AstA: Arginine N-succ 96.8 0.011 2.3E-07 63.8 11.2 146 450-623 3-211 (342)
155 COG3818 Predicted acetyltransf 96.7 0.0014 3.1E-08 60.7 3.8 124 450-601 9-153 (167)
156 KOG0456 Aspartate kinase [Amin 96.7 0.017 3.6E-07 62.5 11.9 70 250-319 258-339 (559)
157 COG4552 Eis Predicted acetyltr 96.4 0.0045 9.9E-08 66.1 5.6 83 488-596 39-127 (389)
158 TIGR03244 arg_catab_AstA argin 96.4 0.01 2.2E-07 63.7 7.8 82 451-535 2-139 (336)
159 TIGR03245 arg_AOST_alph argini 96.2 0.012 2.6E-07 63.1 7.3 82 451-535 2-140 (336)
160 PF13480 Acetyltransf_6: Acety 96.2 0.086 1.9E-06 47.9 12.1 64 489-579 72-135 (142)
161 PRK10456 arginine succinyltran 96.1 0.012 2.6E-07 63.3 7.0 83 450-535 3-141 (344)
162 TIGR03243 arg_catab_AOST argin 96.1 0.015 3.2E-07 62.4 7.4 82 451-535 2-139 (335)
163 TIGR03694 exosort_acyl putativ 95.7 0.078 1.7E-06 54.7 10.8 83 489-596 57-198 (241)
164 COG5630 ARG2 Acetylglutamate s 95.7 0.027 5.8E-07 60.6 7.1 72 457-535 345-423 (495)
165 PF08444 Gly_acyl_tr_C: Aralky 95.6 0.031 6.7E-07 49.0 6.2 72 493-595 4-79 (89)
166 PF00765 Autoind_synth: Autoin 95.2 0.21 4.6E-06 49.4 11.5 83 489-596 46-155 (182)
167 PRK13834 putative autoinducer 94.8 0.34 7.4E-06 48.9 11.8 83 489-596 54-165 (207)
168 KOG4135 Predicted phosphogluco 94.6 0.41 8.9E-06 45.7 10.8 74 498-596 83-170 (185)
169 PF06852 DUF1248: Protein of u 94.4 0.31 6.8E-06 48.3 10.1 75 496-596 55-137 (181)
170 COG1243 ELP3 Histone acetyltra 93.3 0.1 2.2E-06 57.9 4.9 52 522-598 459-511 (515)
171 COG3138 AstA Arginine/ornithin 92.8 0.2 4.4E-06 52.4 5.9 83 449-534 2-140 (336)
172 COG3882 FkbH Predicted enzyme 92.3 0.22 4.7E-06 55.7 5.7 120 449-595 414-549 (574)
173 COG5628 Predicted acetyltransf 91.6 0.75 1.6E-05 42.5 7.4 81 484-591 33-118 (143)
174 PF13880 Acetyltransf_13: ESCO 91.1 0.19 4.1E-06 42.2 2.8 22 514-535 6-27 (70)
175 COG3916 LasI N-acyl-L-homoseri 89.6 4.1 9E-05 41.2 11.3 83 489-596 53-163 (209)
176 KOG2036 Predicted P-loop ATPas 89.2 0.54 1.2E-05 54.6 5.2 24 514-537 615-638 (1011)
177 cd04264 DUF619-NAGS DUF619 dom 87.6 1.4 3E-05 39.5 5.9 46 490-535 10-56 (99)
178 cd04265 DUF619-NAGS-U DUF619 d 87.4 1.4 3E-05 39.5 5.7 45 491-535 12-56 (99)
179 PF02799 NMT_C: Myristoyl-CoA: 84.6 7.2 0.00016 39.0 9.7 116 449-594 29-163 (190)
180 PF01233 NMT: Myristoyl-CoA:pr 84.5 12 0.00026 36.5 10.8 98 452-574 27-146 (162)
181 KOG2779 N-myristoyl transferas 82.9 8.9 0.00019 41.7 10.1 115 449-593 261-394 (421)
182 TIGR03019 pepcterm_femAB FemAB 82.6 8.5 0.00018 41.2 10.2 81 489-596 196-281 (330)
183 PF01853 MOZ_SAS: MOZ/SAS fami 81.0 4.1 8.8E-05 40.7 6.4 37 498-535 66-102 (188)
184 KOG2535 RNA polymerase II elon 79.6 2.3 4.9E-05 45.9 4.3 51 523-598 497-549 (554)
185 COG3375 Uncharacterized conser 78.9 17 0.00037 37.3 10.0 66 490-580 48-116 (266)
186 COG2401 ABC-type ATPase fused 77.7 1.7 3.7E-05 48.3 2.8 56 514-594 242-306 (593)
187 PRK14852 hypothetical protein; 76.1 16 0.00035 45.0 10.6 121 451-596 31-181 (989)
188 PLN03238 probable histone acet 72.9 7.8 0.00017 41.1 6.1 42 497-539 140-181 (290)
189 PF13444 Acetyltransf_5: Acety 72.3 5.4 0.00012 35.3 4.2 47 489-535 32-100 (101)
190 PRK01305 arginyl-tRNA-protein 63.5 1.2E+02 0.0026 31.5 12.5 75 478-579 128-208 (240)
191 PLN03239 histone acetyltransfe 62.8 15 0.00033 39.9 6.0 50 489-539 186-239 (351)
192 PTZ00064 histone acetyltransfe 62.5 14 0.0003 42.0 5.7 50 489-539 357-410 (552)
193 PF05301 Mec-17: Touch recepto 62.0 15 0.00033 34.0 5.0 20 516-535 49-68 (120)
194 KOG4601 Uncharacterized conser 60.1 8.9 0.00019 39.4 3.4 21 515-535 110-130 (264)
195 PLN00104 MYST -like histone ac 56.2 14 0.0003 41.6 4.4 50 489-539 279-332 (450)
196 PF04377 ATE_C: Arginine-tRNA- 56.2 1.8E+02 0.0038 27.3 11.5 61 491-578 42-102 (128)
197 PF10686 DUF2493: Protein of u 53.8 34 0.00073 28.7 5.4 39 100-140 3-41 (71)
198 PF09924 DUF2156: Uncharacteri 53.0 1.1E+02 0.0024 32.1 10.5 65 489-579 181-246 (299)
199 PF09390 DUF1999: Protein of u 50.9 2.4E+02 0.0052 27.3 11.7 120 450-595 2-140 (161)
200 PTZ00063 histone deacetylase; 50.2 55 0.0012 37.0 7.9 63 80-142 231-301 (436)
201 TIGR03827 GNAT_ablB putative b 48.7 52 0.0011 34.1 7.1 55 561-623 28-84 (266)
202 PHA03398 viral phosphatase sup 48.4 58 0.0013 35.0 7.4 56 100-155 129-190 (303)
203 PHA01733 hypothetical protein 47.2 30 0.00064 33.5 4.5 119 450-596 4-132 (153)
204 TIGR01684 viral_ppase viral ph 46.1 67 0.0015 34.5 7.4 57 99-155 126-188 (301)
205 KOG3014 Protein involved in es 46.0 61 0.0013 33.8 6.8 50 486-535 129-205 (257)
206 PF04339 DUF482: Protein of un 45.5 2.2E+02 0.0049 31.5 11.6 112 455-596 211-329 (370)
207 PF12261 T_hemolysin: Thermost 43.6 1.1E+02 0.0024 30.4 8.0 56 514-598 88-144 (179)
208 KOG2779 N-myristoyl transferas 41.9 94 0.002 34.1 7.7 83 453-535 85-189 (421)
209 KOG2747 Histone acetyltransfer 41.6 23 0.00051 39.2 3.2 25 514-538 261-285 (396)
210 cd07041 STAS_RsbR_RsbS_like Su 41.6 1.5E+02 0.0033 25.9 8.0 70 84-154 25-96 (109)
211 PF00850 Hist_deacetyl: Histon 41.3 90 0.0019 33.4 7.7 63 79-141 220-294 (311)
212 TIGR01668 YqeG_hyp_ppase HAD s 40.0 2.3E+02 0.005 27.2 9.7 60 94-153 20-84 (170)
213 PF07395 Mig-14: Mig-14; Inte 39.6 1E+02 0.0022 32.5 7.4 69 490-579 175-245 (264)
214 PTZ00346 histone deacetylase; 39.1 1E+02 0.0023 34.7 7.9 62 79-140 248-317 (429)
215 PF09582 AnfO_nitrog: Iron onl 38.5 48 0.001 33.5 4.7 63 539-601 31-96 (202)
216 KOG2696 Histone acetyltransfer 37.5 46 0.00099 36.6 4.6 42 498-539 199-243 (403)
217 PHA00432 internal virion prote 36.7 2.2E+02 0.0048 27.2 8.5 16 580-595 105-120 (137)
218 PRK15312 antimicrobial resista 34.6 1.3E+02 0.0028 32.2 7.3 46 490-535 205-252 (298)
219 PHA02769 hypothetical protein; 31.4 42 0.00092 30.9 2.7 37 561-597 102-140 (154)
220 TIGR02463 MPGP_rel mannosyl-3- 29.3 1.6E+02 0.0035 29.1 6.9 52 102-153 2-56 (221)
221 PRK12702 mannosyl-3-phosphogly 29.2 1.8E+02 0.004 31.3 7.4 55 99-153 1-58 (302)
222 PRK01158 phosphoglycolate phos 27.9 1.8E+02 0.0039 28.7 7.0 54 100-153 4-60 (230)
223 TIGR02940 anfO_nitrog Fe-only 27.9 94 0.002 31.8 4.8 61 540-600 31-94 (214)
224 PRK15126 thiamin pyrimidine py 26.6 1.9E+02 0.0041 29.6 7.1 54 100-153 3-59 (272)
225 COG0561 Cof Predicted hydrolas 25.6 1.8E+02 0.0039 29.6 6.6 55 100-154 4-61 (264)
226 PRK00192 mannosyl-3-phosphogly 25.6 2E+02 0.0043 29.7 7.0 55 99-153 4-61 (273)
227 PLN02645 phosphoglycolate phos 25.5 2E+02 0.0043 30.6 7.1 54 100-153 29-87 (311)
228 TIGR00521 coaBC_dfp phosphopan 25.3 2E+02 0.0043 32.0 7.2 66 75-140 161-235 (390)
229 PF11124 Pho86: Inorganic phos 25.2 3.3E+02 0.0072 29.4 8.4 93 483-601 164-277 (304)
230 PF02474 NodA: Nodulation prot 25.1 1.4E+02 0.0031 29.6 5.3 52 513-590 85-137 (196)
231 PTZ00174 phosphomannomutase; P 24.7 1.2E+02 0.0027 30.9 5.2 41 99-139 5-47 (247)
232 cd08353 Glo_EDI_BRP_like_7 Thi 24.6 1.9E+02 0.004 26.1 5.9 31 571-601 3-36 (142)
233 TIGR01689 EcbF-BcbF capsule bi 24.4 1.6E+02 0.0035 27.4 5.4 41 99-139 1-49 (126)
234 cd04266 DUF619-NAGS-FABP DUF61 24.4 3.1E+02 0.0068 25.0 7.0 42 494-535 15-62 (108)
235 PRK10976 putative hydrolase; P 23.9 2.2E+02 0.0048 28.9 6.9 54 100-153 3-59 (266)
236 COG1366 SpoIIAA Anti-anti-sigm 23.9 4.7E+02 0.01 23.3 8.3 72 84-156 28-101 (117)
237 PRK10530 pyridoxal phosphate ( 23.8 2.2E+02 0.0047 28.9 6.8 54 100-153 4-60 (272)
238 KOG3698 Hyaluronoglucosaminida 23.5 1.6E+02 0.0036 34.3 6.1 60 447-506 678-750 (891)
239 COG5027 SAS2 Histone acetyltra 23.4 44 0.00096 36.4 1.6 97 438-539 186-288 (395)
240 COG0560 SerB Phosphoserine pho 23.2 1.3E+02 0.0027 30.5 4.8 36 119-154 82-118 (212)
241 TIGR01656 Histidinol-ppas hist 23.1 4.2E+02 0.0091 24.6 8.1 38 116-153 29-82 (147)
242 PRK03669 mannosyl-3-phosphogly 23.0 2.3E+02 0.0051 29.2 6.9 54 100-153 8-64 (271)
243 TIGR01487 SPP-like sucrose-pho 22.4 2.6E+02 0.0057 27.5 6.9 41 100-140 2-44 (215)
244 KOG1342 Histone deacetylase co 22.0 1.9E+02 0.0042 32.1 6.0 65 80-144 233-305 (425)
245 cd06844 STAS Sulphate Transpor 21.6 5.2E+02 0.011 22.2 7.9 55 98-153 38-93 (100)
246 PRK10513 sugar phosphate phosp 21.1 1.5E+02 0.0033 30.2 5.1 54 100-153 4-60 (270)
247 COG0123 AcuC Deacetylases, inc 20.6 2.9E+02 0.0063 30.2 7.2 64 79-142 219-294 (340)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=2.4e-98 Score=829.46 Aligned_cols=508 Identities=79% Similarity=1.241 Sum_probs=471.7
Q ss_pred HHHHHHHhhhHHHhhcCCeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccC
Q 006709 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (634)
Q Consensus 83 ~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~Rv 162 (634)
||+|||+|+|||++||+||||||+||+++.++.+++++.||+.|+..|+++||||||||||+..++++|++++|++|+|+
T Consensus 1 ~v~~fr~a~pYI~~~rgktfVIk~gG~~l~~~~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RV 80 (515)
T PLN02825 1 FVRWFREAWPYIQGHRGSTFVVVISGEVVAGPHLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRI 80 (515)
T ss_pred ChhHHHhhhHHHHHHCCCEEEEEECchhhcCchHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 68999999999999999999999999999887899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHH
Q 006709 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (634)
Q Consensus 163 T~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~ 242 (634)
|++++|+++++++|++|..|++.|++|+++..|+++|+++|++.+++++.||||++++|+|+++++||||+|+|+.||.+
T Consensus 81 Td~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~ 160 (515)
T PLN02825 81 TDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVS 160 (515)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHH
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccCCCCccccccCHHHHHHHHHhhchh
Q 006709 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQ 322 (634)
Q Consensus 243 ~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld~~gklI~~ls~~e~~~li~~~~~~ 322 (634)
.|+.+|++|.|||++|++++.+|+++|+|+|++|+++|.+|+||||||+||+++++.++++|++++.+|++.+++++.+|
T Consensus 161 ~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~ 240 (515)
T PLN02825 161 RIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQ 240 (515)
T ss_pred HHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999888889
Q ss_pred hhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccc-------hhccccCCcccCCCCCCcccccccccCcccccc
Q 006709 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSER-------RIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 395 (634)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~ 395 (634)
|+|+|++.|||++++.++...-.. .+..|.++.+. ....|.++++|+++.| .+.+|+|++||+|++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 314 (515)
T PLN02825 241 SEIAANYVKAVGGEDYSYSLGLDS-----VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNG-LSGEQGFAIGGEERLS 314 (515)
T ss_pred chhhhhhhhhcccccccccccccc-----ccccccccccccccccccccccccccccccCccc-ccccccccccchhhch
Confidence 999999999999986553221100 00112222211 2223566666666655 3678999999999999
Q ss_pred cccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccccccccccCccchHHHHHHhHHHHHHcccC
Q 006709 396 RLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGAL 475 (634)
Q Consensus 396 ~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~Ye~iR~a~~~D~~~i~~l~~~~~~~~~~ 475 (634)
+...+++||.+|.+||++||+|+||+|++.+|+||+||||+||+||+|++|+|+.||+|+.+|++.|.+|++++.+.+..
T Consensus 315 ~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~l 394 (515)
T PLN02825 315 RLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGIL 394 (515)
T ss_pred hhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCC
Q 006709 476 VRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNG 555 (634)
Q Consensus 476 ~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~ 555 (634)
..++.+.+...+..|+|++.||+||||+.++|+..+..+||.+++|+|+|||+|+|++||
T Consensus 395 v~rs~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL-------------------- 454 (515)
T PLN02825 395 VRRTDEELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLL-------------------- 454 (515)
T ss_pred cCCCHHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHH--------------------
Confidence 888999999999999999999999999999988777889999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecccccchhHhhhhccCCCCceEEEeecC
Q 006709 556 FPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLL 621 (634)
Q Consensus 556 ~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~~~s~~~~k~l~ 621 (634)
+++++.|+++|++.+++.++++.+||+++||++++...+|+.+++.||+.||||+|||+|.
T Consensus 455 -----~~le~~Ar~~G~~~L~Lltt~a~~fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l~ 515 (515)
T PLN02825 455 -----DYIEKKAASLGLEKLFLLTTRTADWFVRRGFSECSIESLPEARRKRINLSRGSKYYMKKLL 515 (515)
T ss_pred -----HHHHHHHHHCCCCEEEEEeCcHHHHHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=2.3e-76 Score=648.71 Aligned_cols=428 Identities=45% Similarity=0.756 Sum_probs=393.6
Q ss_pred HHHHHHHhhhHHHhhcCCeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccC
Q 006709 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (634)
Q Consensus 83 ~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~Rv 162 (634)
|+++||||+|||++||++++|||+||++++++++.+++++|+.|+..|.++||||||||++++.++++|++++|++|+|+
T Consensus 1 ~~~~~~~~~~~i~~~~~~~~ViK~GG~~~~~~~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~Rv 80 (429)
T TIGR01890 1 FVAWFREAAPYINAHRGKTFVVGLGGELVEGGNLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRV 80 (429)
T ss_pred ChhHHhhhhHHHHHhCCCEEEEEEChhhccCccHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 78999999999999999999999999999887789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHH
Q 006709 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (634)
Q Consensus 163 T~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~ 242 (634)
|++++|+++.+++|++|..|++.|+ +++-..+.+.+++++.|++++.++++++.+++|+|++|+|+.+|.+
T Consensus 81 T~~~~l~~~~~~~g~vn~~l~~~l~---------~~~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~ 151 (429)
T TIGR01890 81 TDEASLEQAQQAAGTLRLAIEARLS---------MSLSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTE 151 (429)
T ss_pred CCHHHHHHHHHHhChHHHHHHHHHH---------hcCCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHH
Confidence 9999999986669999999999864 3321112224568999999999999887788999999999999999
Q ss_pred HHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCHHHHHHHHHhhch
Q 006709 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQRVK 321 (634)
Q Consensus 243 ~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgl-d~~gklI~~ls~~e~~~li~~~~~ 321 (634)
.|+.+|+.|+|||++|++++.+|+.+|+|+|.+|++||.+|+|++|||+|||+|+ +.++++|++++.+|+++++....
T Consensus 152 ~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~~~- 230 (429)
T TIGR01890 152 GIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAERLG- 230 (429)
T ss_pred HHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHhcc-
Confidence 9999999999999999999999999999999999999999999999999999997 45799999999999988875310
Q ss_pred hhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCH
Q 006709 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (634)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~ 401 (634)
+ | + |.
T Consensus 231 ------------------------------~-------------------------~-----------~---------~~ 235 (429)
T TIGR01890 231 ------------------------------S-------------------------E-----------T---------TR 235 (429)
T ss_pred ------------------------------C-------------------------C-----------C---------cH
Confidence 0 1 1 59
Q ss_pred HHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccccccccccCccchHHHHHHhHHHHHHcccCccCCHH
Q 006709 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDE 481 (634)
Q Consensus 402 ~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~Ye~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~ 481 (634)
+||++|..|++.||++|||+||+.+++|+.|||+++|.||++..|.|+.||+++.+|++.+.++++++...++..+++.+
T Consensus 236 ~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~ 315 (429)
T TIGR01890 236 RLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSRE 315 (429)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777777777888
Q ss_pred HHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHH
Q 006709 482 ELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRD 561 (634)
Q Consensus 482 ~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~ 561 (634)
.+.+.+..++|++.+++++||+.+.++.....++|..++|+|+|||||+|++|| +
T Consensus 316 ~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll-------------------------~ 370 (429)
T TIGR01890 316 YLEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLL-------------------------A 370 (429)
T ss_pred HHHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHH-------------------------H
Confidence 888888889999999999999999987666779999999999999999999999 9
Q ss_pred HHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecccccchhHhhhhccCCCCceEEEeec
Q 006709 562 YIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 620 (634)
Q Consensus 562 ~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~~~s~~~~k~l 620 (634)
+++++|+++|++.+++.++.+.+||+++||++++...+|+.+++.|++.|+|++|||.|
T Consensus 371 ~l~~~A~~~G~~~l~v~~~~a~~fY~k~GF~~~g~~~l~~~~~~~~~~~r~~~~~~~~~ 429 (429)
T TIGR01890 371 HIEDRARQMGISRLFVLTTRTGHWFRERGFQTASVDELPEARRKLYNYQRNSKILMKRL 429 (429)
T ss_pred HHHHHHHHcCCCEEEEeecchHHHHHHCCCEECChhhCCHHHHHHhcccccCceeeecC
Confidence 99999999999999888888899999999999999999999999999999999999986
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=2.4e-73 Score=626.83 Aligned_cols=433 Identities=46% Similarity=0.760 Sum_probs=393.9
Q ss_pred HHHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCc
Q 006709 81 EQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRY 160 (634)
Q Consensus 81 ~~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~ 160 (634)
..|+++||+++|||++||++++|||+||++|+++++++++++|+.|+..|+++||||||||+++..++++|+++++++|+
T Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~VIk~GG~~l~~~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~ 86 (441)
T PRK05279 7 TEFVDWFRHSAPYINAHRGKTFVIMLGGEAIAHGNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGL 86 (441)
T ss_pred hHHHHHHHHHhHHHHHhCCCEEEEEECchhccChhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCc
Confidence 56999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCC-cceeEEeeccCCceeeeeecccccCccccccceEEEe
Q 006709 161 RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKV 239 (634)
Q Consensus 161 RvT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~-~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~v 239 (634)
|+|++++|+++.++.|++|..|++.+++ |++. ++....+++.+++++.++++++.++.|+|++|+++.+
T Consensus 87 RvT~~~~l~~~~~~~g~v~~~l~~~l~~----------g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v 156 (441)
T PRK05279 87 RVTDAAALECVKQAAGELRLDIEARLSM----------GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRI 156 (441)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEE
Confidence 9999999999855579999999987532 4441 1123457888999999999988788899999999999
Q ss_pred cHHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCHHHHHHHHHh
Q 006709 240 DVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 240 d~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgl-d~~gklI~~ls~~e~~~li~~ 318 (634)
|.+.|+.+|++|+|||++|++.+.+|+.+|+|+|.+|++||.+|+|++|||+|||+|+ ++++++|++++.+++++++..
T Consensus 157 ~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~~ 236 (441)
T PRK05279 157 DAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLEA 236 (441)
T ss_pred eHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999987 467999999999998888742
Q ss_pred hchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCccccccccc
Q 006709 319 RVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 398 (634)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~ 398 (634)
-. . | ..+||
T Consensus 237 ~~------------------------------------------------------~--~-------~~~gg-------- 245 (441)
T PRK05279 237 LE------------------------------------------------------D--G-------DYNSG-------- 245 (441)
T ss_pred hh------------------------------------------------------c--C-------CCCcc--------
Confidence 10 0 1 23566
Q ss_pred CCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccccccccccCccchHHHHHHhHHHHHHcccCccC
Q 006709 399 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRR 478 (634)
Q Consensus 399 ~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~Ye~iR~a~~~D~~~i~~l~~~~~~~~~~~~~ 478 (634)
|.+||++|..+++.|+++|||+|++.+++|+.|||+.+|.||+|.+|.|..||+++++|++.+.+++.++....+...+
T Consensus 246 -M~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~~ 324 (441)
T PRK05279 246 -TARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVRR 324 (441)
T ss_pred -HHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887777766677
Q ss_pred CHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcc
Q 006709 479 TDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPF 558 (634)
Q Consensus 479 ~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~ 558 (634)
+.+.+.+....+++++.+++++||+.+.++.....++|..++|+|+|||||+|++||
T Consensus 325 ~~~~l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll----------------------- 381 (441)
T PRK05279 325 SREQLEREIDKFTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLL----------------------- 381 (441)
T ss_pred CHHHHhcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHH-----------------------
Confidence 788888777889999999999999998876555678999999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecccccchhHhhhhccCCCCceEEEeec
Q 006709 559 LRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 620 (634)
Q Consensus 559 ~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~~~s~~~~k~l 620 (634)
++++++|++.|+..+++.++++..||+++||++++...+|+.++..|++.|+||+|+|+|
T Consensus 382 --~~l~~~a~~~g~~~l~l~~~~a~~fY~k~GF~~~g~~~~~~~~~~~y~~~r~~~~~~~~~ 441 (441)
T PRK05279 382 --KRIEQRARQLGLKRLFVLTTRTAHWFLERGFVPVDVDDLPEAKRQLYNYQRRSKVLVKDL 441 (441)
T ss_pred --HHHHHHHHHcCCCEEEEecchHHHHHHHCcCEECChhhCcHHHHHhhCcccCceeeeecC
Confidence 999999999999999988888999999999999999999999999999999999999986
No 4
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-52 Score=428.21 Aligned_cols=260 Identities=38% Similarity=0.611 Sum_probs=243.3
Q ss_pred cCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH-HHHH
Q 006709 98 RGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAA 175 (634)
Q Consensus 98 r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~-~~a~ 175 (634)
++|++|||+||+++.+++ ++++++||++|+..|.++|||||||||++..++++|++++|++|+|+|++++|+++ |++.
T Consensus 1 ~~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~ 80 (265)
T COG0548 1 RGKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLG 80 (265)
T ss_pred CCceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHH
Confidence 579999999999999988 89999999999999999999999999999999999999999999999999999998 7888
Q ss_pred hHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEE
Q 006709 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (634)
Q Consensus 176 G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPV 255 (634)
|++|+.|++. |+++|.+ ++++++.|++|++++++++..++|+||+|+++.+|++.|+.+|++|+|||
T Consensus 81 G~vNk~iva~---------l~~~g~~----avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpV 147 (265)
T COG0548 81 GTVNKEIVAR---------LSKHGGQ----AVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPV 147 (265)
T ss_pred HHHHHHHHHH---------HHHhCCc----ceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceE
Confidence 8999999997 5788886 89999999999999999988889999999999999999999999999999
Q ss_pred EcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-CCCc--cccccCHHHHHHHHHhhchhhhhHHHHHHh
Q 006709 256 LSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGH--LIRFLTLQEADSLIRQRVKQSEIAANYVKA 332 (634)
Q Consensus 256 v~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~~gk--lI~~ls~~e~~~li~~~~~~~~~~~~~~~~ 332 (634)
++|++++.+|+.+|+|+|++|.++|.+|+|+|||||||++|+. ..+. +|++++.+|++++++++.
T Consensus 148 iapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~------------ 215 (265)
T COG0548 148 IAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI------------ 215 (265)
T ss_pred EecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC------------
Confidence 9999999999999999999999999999999999999999874 3444 999999999999986532
Q ss_pred hhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHH
Q 006709 333 VAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCR 412 (634)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~ 412 (634)
.+|| |.+||++|+.||+
T Consensus 216 ------------------------------------------------------i~~G---------Mi~Kv~~a~~A~~ 232 (265)
T COG0548 216 ------------------------------------------------------ITGG---------MIPKVEAALEALE 232 (265)
T ss_pred ------------------------------------------------------ccCc---------cHHHHHHHHHHHH
Confidence 1234 9999999999999
Q ss_pred cCCceEEEccCCcchhHHHHHHhhcCCcccccc
Q 006709 413 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (634)
Q Consensus 413 ~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~ 445 (634)
.||++|||+||+.+++||.|||+++++||++.+
T Consensus 233 ~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 233 SGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred hCCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 999999999999999999999999999999853
No 5
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.6e-51 Score=428.46 Aligned_cols=278 Identities=51% Similarity=0.799 Sum_probs=253.5
Q ss_pred HHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCcc
Q 006709 82 QFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYR 161 (634)
Q Consensus 82 ~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~R 161 (634)
+|+++||+++|||++||++++|||+||+++.++++++++++|+.|++.|+++||||||||++++++.++|+++++++|+|
T Consensus 1 ~~~~~~~~~~~yi~~~~~~~~VIKlGG~ai~~~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~R 80 (280)
T cd04237 1 QFVDWFREAAPYINAHRGKTFVIAFGGEAVAHPNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLR 80 (280)
T ss_pred ChHHHHHHHhHHHHHhCCCEEEEEEChHHhcCchHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcC
Confidence 59999999999999999999999999999988789999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCC-cceeEEeeccCCceeeeeecccccCccccccceEEEec
Q 006709 162 ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD 240 (634)
Q Consensus 162 vT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~-~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd 240 (634)
+|++++|+++.+++|.+|+.|++.|+ + |++. +.+..++++.+++++.++++++.++.|++++|+++.+|
T Consensus 81 vT~~~~l~~~~~~~g~v~~~l~~~l~---------~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~ 150 (280)
T cd04237 81 ITDAAALECVKEAAGAVRLEIEALLS---------M-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRID 150 (280)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH---------h-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEc
Confidence 99999999985557999999998753 2 4431 11234678889999999999888889999999999999
Q ss_pred HHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHHHHHHHhh
Q 006709 241 VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQR 319 (634)
Q Consensus 241 ~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~~gklI~~ls~~e~~~li~~~ 319 (634)
.+.|+++|++|+|||++|++.+.+|+.+|+|+|.+|++||.+|+|++|+|+||+||+. .++++|++++.+|+++++..+
T Consensus 151 ~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~ 230 (280)
T cd04237 151 ADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETG 230 (280)
T ss_pred HHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999975 579999999999999987542
Q ss_pred chhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccC
Q 006709 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (634)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~ 399 (634)
. +.+||
T Consensus 231 ~-----------------------------------------------------------------~~~gg--------- 236 (280)
T cd04237 231 A-----------------------------------------------------------------LLTND--------- 236 (280)
T ss_pred C-----------------------------------------------------------------CCCCC---------
Confidence 1 12456
Q ss_pred CHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 400 m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
|.+||++|..|+++||+++||+|++.+++|+.|+|+++|.||++
T Consensus 237 M~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 237 TARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 99999999999999999999999999999999999999999985
No 6
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=100.00 E-value=1.1e-50 Score=423.05 Aligned_cols=274 Identities=27% Similarity=0.451 Sum_probs=252.0
Q ss_pred hHHHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccC
Q 006709 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (634)
Q Consensus 80 ~~~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~ 158 (634)
..+++++||+++|||++||++++|||+||+++.++. .+.+++||+.|+..|.++|||||||++++..++++|+++++++
T Consensus 4 ~~~~~~~~~~~~pyi~~~~~~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~ 83 (284)
T CHL00202 4 NDERVQVLSEALPYIQKFRGRIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWN 83 (284)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeEC
Confidence 347899999999999999999999999999998876 5699999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEE
Q 006709 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 237 (634)
Q Consensus 159 G~RvT~~~~l~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~ 237 (634)
|+|+|++++|+++ ++++|++|..|++. |+++|++ ++++++.|++++++++. ++.|++++|+++
T Consensus 84 G~rvT~~~~l~~~~~~l~g~ln~~lv~~---------L~~~Gv~----av~l~~~d~~~i~a~~~---~~~d~~~~G~i~ 147 (284)
T CHL00202 84 GIRVTDKVTMEIVEMVLAGKVNKDLVGS---------INANGGK----AVGLCGKDANLIVARAS---DKKDLGLVGEIQ 147 (284)
T ss_pred CcccCCHHHHHHHHHHHhhHHHHHHHHH---------HHhCCCC----eeeeeeccCCEEEEEeC---CCcccccceeEE
Confidence 9999999999998 67889999999997 5788887 89999999999999874 456899999999
Q ss_pred EecHHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccCC----CCccccccCHHHHH
Q 006709 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEAD 313 (634)
Q Consensus 238 ~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld~----~gklI~~ls~~e~~ 313 (634)
.+|.+.|+.+|++|.|||++|++.+.+|+.+|+|+|.+|++||.+|+||+|+|+||++|+.. .+++|++++.+|++
T Consensus 148 ~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~ 227 (284)
T CHL00202 148 QVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEAR 227 (284)
T ss_pred ecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999742 37899999998888
Q ss_pred HHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccc
Q 006709 314 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 393 (634)
Q Consensus 314 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~ 393 (634)
+++..+ +.+||
T Consensus 228 ~l~~~g------------------------------------------------------------------~~tGG--- 238 (284)
T CHL00202 228 NLASTG------------------------------------------------------------------IISGG--- 238 (284)
T ss_pred HHHhcC------------------------------------------------------------------CCCCC---
Confidence 776321 24566
Q ss_pred cccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 394 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 394 ~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
|.+||++|..|+++|++++||+||+.+++||.|+|++++.||+|.
T Consensus 239 ------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 239 ------MIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred ------HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 999999999999999999999999999999999999999999984
No 7
>PLN02512 acetylglutamate kinase
Probab=100.00 E-value=4.5e-48 Score=407.72 Aligned_cols=276 Identities=29% Similarity=0.478 Sum_probs=253.2
Q ss_pred chHHHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCccccc
Q 006709 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL 157 (634)
Q Consensus 79 ~~~~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~ 157 (634)
....|+.+||+++|||++||++++||||||+++++++ ...++++|+.|+..|.++|||||||++++..++++|++++++
T Consensus 27 ~~~~~~~~~r~~~pyi~~~~~~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~ 106 (309)
T PLN02512 27 TNLSRVDILSEALPFIQRFRGKTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFK 106 (309)
T ss_pred chHHHHHHHHHHhHHHHHHCCCeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCC
Confidence 4568999999999999999999999999999999877 467999999999999999999999999999999999999999
Q ss_pred CCccCCCHHHHHHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceE
Q 006709 158 GRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV 236 (634)
Q Consensus 158 ~G~RvT~~~~l~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v 236 (634)
+|+|+|+.++++++ ++++|++|..|++. |+++|++ ++++++.|++|+++++++ ++.|++++|++
T Consensus 107 ~G~rvT~~~~lei~~~~l~g~ln~~lv~~---------L~~~Gv~----av~l~g~d~~~i~a~~~~--~~~~~~~~G~i 171 (309)
T PLN02512 107 NGLRVTDAETMEVVEMVLVGKVNKSLVSL---------INKAGGT----AVGLSGKDGRLLRARPSP--NSADLGFVGEV 171 (309)
T ss_pred CCCcCCCHHHHHHHHHHHhhHHHHHHHHH---------HHHcCCC----eEEeehhhCCEEEEEEcC--cCcccccccee
Confidence 99999999999998 67789999999986 5789998 899999999999999863 34689999999
Q ss_pred EEecHHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC----CCCccccccCHHHH
Q 006709 237 KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEA 312 (634)
Q Consensus 237 ~~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld----~~gklI~~ls~~e~ 312 (634)
+.+|.+.|+.+|+.|.|||++|++++.+|+.+++|+|.+|++||.+|+||+|+|+|||+|+. +++++|++++.+|+
T Consensus 172 ~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~ 251 (309)
T PLN02512 172 TRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGV 251 (309)
T ss_pred eecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999974 35899999999888
Q ss_pred HHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCccc
Q 006709 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (634)
Q Consensus 313 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~ 392 (634)
++++..+ +.+||
T Consensus 252 ~~l~~~~------------------------------------------------------------------~vtGG-- 263 (309)
T PLN02512 252 RKLIADG------------------------------------------------------------------KIAGG-- 263 (309)
T ss_pred HHHHhCC------------------------------------------------------------------CCCCc--
Confidence 8775321 24566
Q ss_pred ccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 393 ~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
|.+||++|..+++.|++++||+||..++.++.++|++++.||.|.
T Consensus 264 -------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~ 308 (309)
T PLN02512 264 -------MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308 (309)
T ss_pred -------HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence 999999999999999999999999999998899999999999985
No 8
>PRK00942 acetylglutamate kinase; Provisional
Probab=100.00 E-value=6.8e-47 Score=394.34 Aligned_cols=277 Identities=34% Similarity=0.536 Sum_probs=253.3
Q ss_pred hHHHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccC
Q 006709 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (634)
Q Consensus 80 ~~~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~ 158 (634)
...++.+||+++|||++||++++|||+||+++++++ +..++++|+.|++.|.++|||||||++++.+++++++..++.+
T Consensus 4 ~~~~~~~~r~~~~yi~~~~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~ 83 (283)
T PRK00942 4 ALEKAEVLSEALPYIQRFMGKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVN 83 (283)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeC
Confidence 357899999999999999999999999999999887 6889999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEE
Q 006709 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 237 (634)
Q Consensus 159 G~RvT~~~~l~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~ 237 (634)
|+|+|+.++++.. ++++|++|..+++. |+++|++ ++++++.+++++++++. .+++|++++|+++
T Consensus 84 g~~~t~~~~l~~~~~a~~G~l~~~i~~~---------L~~~Gv~----a~~l~~~~~~~~ta~~~--~~~~~~~~~g~i~ 148 (283)
T PRK00942 84 GLRVTDAETMEVVEMVLAGKVNKELVSL---------INKHGGK----AVGLSGKDGGLITAKKL--EEDEDLGFVGEVT 148 (283)
T ss_pred CEecCCHHHHHHHHHHHcCchHHHHHHH---------HHhCCCC----ccceeeccCCEEEEEEC--CCCCCCccccceE
Confidence 9999999999987 45558999998875 6789998 88999999999999886 5678999999999
Q ss_pred EecHHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHHHHHH
Q 006709 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLI 316 (634)
Q Consensus 238 ~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~~gklI~~ls~~e~~~li 316 (634)
.+|.+.|+.+|++|.|||++|++++.+|+++|+|+|.+|++||.+|+||+|+|+|||+|+. .++++|++++.+|+++++
T Consensus 149 ~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~ 228 (283)
T PRK00942 149 PVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELI 228 (283)
T ss_pred EECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975 469999999998888875
Q ss_pred HhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCccccccc
Q 006709 317 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 396 (634)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~ 396 (634)
..+ +.+||
T Consensus 229 ~~~------------------------------------------------------------------~~tgg------ 236 (283)
T PRK00942 229 EDG------------------------------------------------------------------VITGG------ 236 (283)
T ss_pred HcC------------------------------------------------------------------CCCCc------
Confidence 321 23456
Q ss_pred ccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccc
Q 006709 397 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (634)
Q Consensus 397 ~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D 446 (634)
|.+||++|..+++.|+.+|+|+||..+++||.++|++++.||+|.++
T Consensus 237 ---m~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 237 ---MIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred ---hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 99999999999999999999999999999899999999999999764
No 9
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=100.00 E-value=9.2e-46 Score=385.16 Aligned_cols=269 Identities=32% Similarity=0.525 Sum_probs=246.4
Q ss_pred HHHhhhHHHhhcCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCH
Q 006709 87 FREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS 165 (634)
Q Consensus 87 ~r~a~pYi~~~r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~ 165 (634)
+|+|+|||++||++++|||+||+++++++ .++++++|+.|+..|.++|||||||++++..+++++++.++.+|+|+|++
T Consensus 2 ~~~~~~yi~~~~~~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~ 81 (279)
T cd04250 2 LIEALPYIQKFRGKTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDE 81 (279)
T ss_pred hhhhhHHHHHHcCCEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCH
Confidence 79999999999999999999999999877 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeeccc---ccCccccccceEEEecH
Q 006709 166 ESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV---VDGVDYGATGEVKKVDV 241 (634)
Q Consensus 166 ~~l~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~---~~g~d~g~~G~v~~vd~ 241 (634)
++++.+ ++++|++|..|++. |+++|++ ++++++.|++++++++.++ ++++||+++|+++.++.
T Consensus 82 ~~~~~~~~~~~g~ln~~l~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~ 148 (279)
T cd04250 82 ETMEIVEMVLVGKVNKEIVSL---------INRAGGK----AVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP 148 (279)
T ss_pred HHHHHHHHHHcCchHHHHHHH---------HHHcCCC----cceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH
Confidence 999887 44448999999876 6789988 8999999999999999876 57889999999999999
Q ss_pred HHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccCC----CCccccccCHHHHHHHHH
Q 006709 242 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 242 ~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld~----~gklI~~ls~~e~~~li~ 317 (634)
+.|+.+|+.|.|||+++++.+..|+.+++|+|.+|++||.+|+||+|+|+|||+|+.. ++++|++++.+|+++++.
T Consensus 149 ~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~ 228 (279)
T cd04250 149 ELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIA 228 (279)
T ss_pred HHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999999999999999742 489999999988877753
Q ss_pred hhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccc
Q 006709 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (634)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~ 397 (634)
.+ +.+||
T Consensus 229 ~~------------------------------------------------------------------~~tGg------- 235 (279)
T cd04250 229 DG------------------------------------------------------------------IISGG------- 235 (279)
T ss_pred cC------------------------------------------------------------------CCCCc-------
Confidence 21 23466
Q ss_pred cCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 398 ~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
|.+||++|..++++|+.+|+|+||..+++++.++|++++.||+|
T Consensus 236 --m~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 236 --MIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred --hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999986
No 10
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-48 Score=412.46 Aligned_cols=438 Identities=42% Similarity=0.587 Sum_probs=385.0
Q ss_pred chHHHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccC
Q 006709 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (634)
Q Consensus 79 ~~~~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~ 158 (634)
...+.+..++|++|||..|+++++||+.+|.++....++.+++++++|+..|.++|||||+++|+++.+++.++++.+.+
T Consensus 74 s~~~~v~~~~e~l~yi~~~~~q~fvV~~~g~~~~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~ 153 (520)
T KOG2436|consen 74 SSDTTVRILRESLPYITSFRDQKFVVIKSGEAISTSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVD 153 (520)
T ss_pred CChhHHHHHHHHHHHHHHhcCceEEEEecccccccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCccccc
Confidence 66889999999999999999999999999998855558999999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHHH-HHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeecc--CCceeeeeecccccCccccccce
Q 006709 159 RYRITDSESLAAAM-EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVA--SGNFLAAKRKGVVDGVDYGATGE 235 (634)
Q Consensus 159 G~RvT~~~~l~~~~-~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~--dg~~l~ak~~g~~~g~d~g~~G~ 235 (634)
|+|+|++.+|+++. ..+++.|..++.+ |+++|.. +.+.+.. .++++.+++++++++.+|+++|+
T Consensus 154 ~~RvTda~t~q~~~~~~~~E~n~~lv~n---------L~~~g~~----ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~ge 220 (520)
T KOG2436|consen 154 GYRVTDAHTLQAAKESVSLEANLNLVIN---------LSQLGTR----ARPSSSGVRVGNFFPADRNGVLDGEDYGLVGE 220 (520)
T ss_pred ceecccHHHHHHhhhcchhhhhhHHHHH---------HHHhhce----eccccccccccceeecccccccccceeeeecc
Confidence 99999999999984 4777777666654 6788876 4444433 26799999999999999999999
Q ss_pred EEEecHHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeec-ccccCCCCccccccCHHHHHH
Q 006709 236 VKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILDESGHLIRFLTLQEADS 314 (634)
Q Consensus 236 v~~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTD-Vdgld~~gklI~~ls~~e~~~ 314 (634)
|.++|.+.|+.+++.|.+|++++++.+++|+++|||+|++|.++|.+|+|+++++++| +.+++++++.++.++.+|...
T Consensus 221 i~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~~S~l~l~~e~~ 300 (520)
T KOG2436|consen 221 IKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKENGEDISSLILQEEDA 300 (520)
T ss_pred cceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccCcccccccccchhHh
Confidence 9999999999999999999999999999999999999999999999999999999999 557789999999999999999
Q ss_pred HHHhhchhhhhHHHHHHhhhhccccccCCCCC-CcccccC--CCCCccc-cchhccccCCcccCCCCCCcccccccccCc
Q 006709 315 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDS-IGSVYSS--QNGKTFS-ERRIATFNNGVGFDNGNGLWSSEQGFAIGG 390 (634)
Q Consensus 315 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG 390 (634)
+++...+|+.+|+.++++|.+...+.++.+-+ ++.++.- .....+. .++.++|+++.+++.++++|+..++++.++
T Consensus 301 ~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~~~~gv~~~k~~sl~~~~~~~al~~ 380 (520)
T KOG2436|consen 301 GLRKPSQQKNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTLISGGVGINKGNSLISQSFKRALDL 380 (520)
T ss_pred hhhhhhhhcccccccchhhhhheeeccCcCCCCCcceeecccccceeeccCCCCccccCceeeecCcccccchhhhhcch
Confidence 99999999999999999999877663443211 1111110 0001111 448899999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccccccccccCccchHHHHHHhHHHHH
Q 006709 391 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLV 470 (634)
Q Consensus 391 ~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~Ye~iR~a~~~D~~~i~~l~~~~~ 470 (634)
+++++|+++.++++.+|...|..+++++|..||+.++.++++.|.+.++||+. .+-|+.++.+..+|+|+|....++..
T Consensus 381 ~~~~~rln~~lse~i~a~~~~~~~i~~~~~~D~~~e~V~~ldkf~~~~~~~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~ 459 (520)
T KOG2436|consen 381 EEYIDRLNGSLSELIAAGDYCGGAIKTYELSDGTNEGVLYLDKFAVSGMGTGS-SDVSDGIFNVMVEDFPEILWRSRPLN 459 (520)
T ss_pred HHHHHHhhchHHHHHHHHHHhccceEEEEccCCCcccceeeeecccCCccccc-chhhHHHHHHHHHhhhhheeeccccc
Confidence 99999999999999999999999999999999999999999999999999988 88899999999999999988888877
Q ss_pred HcccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 471 ESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
+......+..+..+.+.+.+++.+.+++++.|+.+++++ +++.+.|.+++|+++.+.+++
T Consensus 460 ~~~~w~f~rs~g~L~~~~~~lfwyg~~~i~~~a~~~~~~-----~v~~~~~~~d~~~s~~n~k~~ 519 (520)
T KOG2436|consen 460 EVNKWYFRRSEGSLRALDFKLFWYGEGQIIKCAALFQFF-----EVAAMSVASDIRPSWQNDKLL 519 (520)
T ss_pred ccceEEEeccHHHHhccCcEEEEecCcHHHHHHHhhhhh-----HHHHhhhccccCccccCCCCC
Confidence 776666667777888889999999999999999999875 688899999999999998876
No 11
>PRK04531 acetylglutamate kinase; Provisional
Probab=100.00 E-value=8.8e-42 Score=369.85 Aligned_cols=312 Identities=22% Similarity=0.287 Sum_probs=252.1
Q ss_pred CCCcchHHHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcc
Q 006709 75 YNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (634)
Q Consensus 75 g~~~~~~~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~ 154 (634)
|+++|+.+|+++||++.|| +++|||+||+++.+ .++.++++|+.|+..|.++||||||||+++..++++|+++
T Consensus 18 ~~~~e~~~~l~~F~~~~~~------~~~VIKiGG~~l~~-~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~ 90 (398)
T PRK04531 18 ASAKEISQYLKRFSQLDAE------RFAVIKVGGAVLRD-DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEK 90 (398)
T ss_pred CChhhhHHHHHHHhCcCCC------cEEEEEEChHHhhc-CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCc
Confidence 5677778888888888877 99999999999985 4899999999999999999999999999999999999999
Q ss_pred cccCCccCCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccc
Q 006709 155 KYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATG 234 (634)
Q Consensus 155 ~~~~G~RvT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G 234 (634)
++++|+|+|++++|+++..+.+++|..|++
T Consensus 91 ~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~-------------------------------------------------- 120 (398)
T PRK04531 91 ETVNGLRVTSPEALAIVRKVFQRSNLDLVE-------------------------------------------------- 120 (398)
T ss_pred EEECCEecCCHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 999999999999999986555677754443
Q ss_pred eEEEecHHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccCH-HHH
Q 006709 235 EVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTL-QEA 312 (634)
Q Consensus 235 ~v~~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgl-d~~gklI~~ls~-~e~ 312 (634)
.|+.+|++|.|||++|++.+.+|+++|+|+|.+|++||.+|+|+||||+||++|+ +.+|++|++++. +++
T Consensus 121 --------~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~ 192 (398)
T PRK04531 121 --------AVESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEY 192 (398)
T ss_pred --------HHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHH
Confidence 1778899999999999999999999999999999999999999999999999997 468999999997 467
Q ss_pred HHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCccc
Q 006709 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (634)
Q Consensus 313 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~ 392 (634)
+.++..+ ..+||
T Consensus 193 ~~l~~~~------------------------------------------------------------------~vtgG-- 204 (398)
T PRK04531 193 DHLMQQP------------------------------------------------------------------WINGG-- 204 (398)
T ss_pred HHHHhcC------------------------------------------------------------------CCCcc--
Confidence 7665321 13455
Q ss_pred ccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccccc-cccccCccchHHHHHHhHHHHHH
Q 006709 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY-EGTRTAKVTDLSGIKQIIQPLVE 471 (634)
Q Consensus 393 ~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~Y-e~iR~a~~~D~~~i~~l~~~~~~ 471 (634)
|.+||++|..+++ +++++|+++++.+++|+.|||+++|.||+|.+..- ...+....=|++.+.+++.
T Consensus 205 -------M~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~i~~~~~~~~~d~~~l~~ll~---- 272 (398)
T PRK04531 205 -------MKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRGERILRATDWDELDLERLNLLIE---- 272 (398)
T ss_pred -------HHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecCCceeeeCChhhcCHHHHHHHHh----
Confidence 9999999999996 46679999999999999999999999999987532 2233333348888888863
Q ss_pred cccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 472 SGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
..+- +...+.+.+. ...+-+..++..=|++.+.+ .....++..++|.++-||.|+++.++
T Consensus 273 ~sf~-r~~~~~y~~~-~~~~~~y~~~~y~~~Aiv~~--~~~~~~Ldkf~v~~~~~~~~v~d~vf 332 (398)
T PRK04531 273 SSFG-RTLKPDYFDT-TQLLRAYVSENYRAAAILTE--TGGGPYLDKFAVLDDARGEGLGRAVW 332 (398)
T ss_pred hhcc-cchHHHHhcc-CCceEEEEeCCCcEEEEEec--CCCceEeEEEEEccchhhcChHHHHH
Confidence 2221 1122333332 34444444555666666653 34678999999999999999999999
No 12
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=100.00 E-value=1.9e-42 Score=357.16 Aligned_cols=263 Identities=18% Similarity=0.205 Sum_probs=227.9
Q ss_pred hhccCCcccc-CCCCcchHHHHHHHHHhhhHHHhhcCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchH
Q 006709 64 SEAMGGNVEE-TYNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHV 141 (634)
Q Consensus 64 ~~~~~~~~~~-~g~~~~~~~~v~~~r~a~pYi~~~r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~ 141 (634)
|++..+|.++ |++++|.++|.+.|..+.|+- ..+.+|||+||+++.+++ +++++++|++|+..|.++||||||||
T Consensus 2 ~~~~~~~~~~~~~~~~e~~~~l~~f~~~~~~~---~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp 78 (271)
T cd04236 2 YRDVKAFLHQKGGDPREARYWLTQFQIAMPND---WPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSA 78 (271)
T ss_pred cchHHHHHHHhCCCHHHHHHHHHHhhccCCCC---CCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 5677888899 778999999999999998762 248899999999997655 89999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeee
Q 006709 142 QIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKR 221 (634)
Q Consensus 142 ~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~ 221 (634)
+++..++ +.++.. +-+... ..|..|++. |+++|++ ++++++. ++++++++
T Consensus 79 ~i~~~l~----~~~~~~-----------~~~v~~-~~n~~Lv~~---------L~~~G~~----A~gl~g~-~~~i~a~~ 128 (271)
T cd04236 79 PDGTNMS----DLELQA-----------ARSRLV-KDCKTLVEA---------LQANSAA----AHPLFSG-ESVLQAEE 128 (271)
T ss_pred HHhhhhc----CCcchh-----------eehhHH-HHHHHHHHH---------HHhCCCC----eeeecCc-cceEEEEE
Confidence 9998776 222211 112333 778888886 5788988 8999987 68999887
Q ss_pred cccccCccccccceEEEecHHHHHHHHcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeeccccc-CCC
Q 006709 222 KGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DES 300 (634)
Q Consensus 222 ~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgl-d~~ 300 (634)
..|++++|+|+.||.+.|+.+|++|+|||++|++++.+|+.+|+|+|.+|++||.+|+|+||||+||++|+ +.+
T Consensus 129 -----~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~ 203 (271)
T cd04236 129 -----PEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQK 203 (271)
T ss_pred -----cccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCC
Confidence 25789999999999999999999999999999999999999999999999999999999999999999997 567
Q ss_pred CccccccCH-HHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCC
Q 006709 301 GHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGL 379 (634)
Q Consensus 301 gklI~~ls~-~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~ 379 (634)
+++|++++. +|++.+++++. +
T Consensus 204 g~lI~~l~~~~e~~~li~~g~-----------------------------i----------------------------- 225 (271)
T cd04236 204 HKVLPQVHLPADLPSLSDAEW-----------------------------L----------------------------- 225 (271)
T ss_pred CCCccccCcHHHHHHHHhCCE-----------------------------E-----------------------------
Confidence 999999995 89999987543 2
Q ss_pred cccccccccCcccccccccCC---HHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 380 WSSEQGFAIGGQERLSRLNGY---LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 380 ~~~~~~~~~GG~~~~~~~~~m---~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
+|| | ++|+++|..++..|+. |||++ +++|+.|||++.|.||+|
T Consensus 226 --------~gG---------m~~ki~ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 226 --------SET---------EQNRIQDIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred --------cCC---------eeechHHHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 234 7 8999999999999998 99998 788999999999999986
No 13
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=100.00 E-value=1.5e-41 Score=347.98 Aligned_cols=244 Identities=25% Similarity=0.392 Sum_probs=216.2
Q ss_pred EEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHHHHH
Q 006709 102 FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM 181 (634)
Q Consensus 102 iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~in~~ 181 (634)
.|||+||+++++. +++++++|+.|++.|+++|||||||+|++..++++|++++|++|.|+|++++|+.+..+++++|..
T Consensus 1 ~ViKiGG~~~~~~-l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~ 79 (248)
T cd04252 1 AVIKVGGAIIEDD-LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLK 79 (248)
T ss_pred CEEEEChhhhhcc-HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3899999999875 899999999999999999999999999999999999999999999999999999997677899999
Q ss_pred HHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcCCcc
Q 006709 182 IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY 261 (634)
Q Consensus 182 Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v~~ 261 (634)
+++. |.++|++ ++++++ .++.+++ .++.|+||+|+++.+|.+.|+.+|+.|+|||++|+++
T Consensus 80 iv~~---------l~~~g~~----a~~l~~---~~~~a~~---~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~ 140 (248)
T cd04252 80 LVEA---------LERNGAR----ARPITS---GVFEAEY---LDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAE 140 (248)
T ss_pred HHHH---------HHhCCCC----cccccC---ceEEEEE---CcCccCCccCceeeECHHHHHHHHHCCCeEEECCceE
Confidence 9997 5788987 677763 3557776 3678999999999999999999999999999999999
Q ss_pred CCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHH-HHHHHHHhhchhhhhHHHHHHhhhhcccc
Q 006709 262 SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQ-EADSLIRQRVKQSEIAANYVKAVAEEDIT 339 (634)
Q Consensus 262 ~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~~gklI~~ls~~-e~~~li~~~~~~~~~~~~~~~~~~~~~~~ 339 (634)
+++|+.+|+|+|++|++||.+|+|++|+|+||++|+. .++++|++++.. ++++++..+
T Consensus 141 ~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~-------------------- 200 (248)
T cd04252 141 TPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQP-------------------- 200 (248)
T ss_pred CCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcC--------------------
Confidence 9999999999999999999999999999999999974 569999999974 676766321
Q ss_pred ccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHc--CCce
Q 006709 340 CFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR--GVQR 417 (634)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~--Gv~r 417 (634)
..+|| |.+||++|..+.+. |+..
T Consensus 201 ----------------------------------------------~vtgG---------M~~Kl~~~~~~~~~~~~~~~ 225 (248)
T cd04252 201 ----------------------------------------------WVKYG---------TKLKIKEIKELLDTLPRSSS 225 (248)
T ss_pred ----------------------------------------------CcCCc---------hHHHHHHHHHHHHhCCCceE
Confidence 24566 99999998888877 6667
Q ss_pred EEEccCCcchhHHHHHHhhcCCcccc
Q 006709 418 VHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 418 v~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
|+|.+ +++|+.|||+++|.||+|
T Consensus 226 v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 226 VSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EEEEC---CchHHHHHhcCCCCCccC
Confidence 88887 578999999999999985
No 14
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.5e-40 Score=341.74 Aligned_cols=253 Identities=31% Similarity=0.512 Sum_probs=231.1
Q ss_pred EEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHH-hHHH
Q 006709 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAA-GGIR 179 (634)
Q Consensus 102 iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~-G~in 179 (634)
+|||+||+++++++ +.+++++|+.|+..|.++|||||+|++++.+++++++..++.++.|+|+++.++.+..++ |.+|
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln 80 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVN 80 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchH
Confidence 59999999999887 799999999999999999999999999999999999999999999999999999876555 9999
Q ss_pred HHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcCC
Q 006709 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (634)
Q Consensus 180 ~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v 259 (634)
..|++. |+++|++ ++++++.++++++++++| .+++|++|+|+++.++.+.|+.+|++|.|||++|+
T Consensus 81 ~~i~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~-~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~ 146 (256)
T cd04238 81 KELVSL---------LNRAGGK----AVGLSGKDGGLIKAEKKE-EKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI 146 (256)
T ss_pred HHHHHH---------HHhCCCC----CCCcccccCCEEEEEECC-CCCCCcccccceEEECHHHHHHHHHCCCEEEECCc
Confidence 999876 5788998 899999999999999988 78899999999999999999999999999999999
Q ss_pred ccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccCC-CCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccc
Q 006709 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 338 (634)
Q Consensus 260 ~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld~-~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~ 338 (634)
+++.+|+++|+|+|.+|++||.+|+||+|+|+|||+|+.. ++++|++++.+|+++++..+
T Consensus 147 ~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~------------------- 207 (256)
T cd04238 147 AVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDG------------------- 207 (256)
T ss_pred EECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcC-------------------
Confidence 9999999999999999999999999999999999999754 59999999998887775311
Q ss_pred cccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceE
Q 006709 339 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 418 (634)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv 418 (634)
+.+|| |.+|+++|..++++|+.+|
T Consensus 208 -----------------------------------------------~~~gg---------m~~Kl~~a~~~~~~g~~~v 231 (256)
T cd04238 208 -----------------------------------------------VISGG---------MIPKVEAALEALEGGVRKV 231 (256)
T ss_pred -----------------------------------------------CCCCC---------hHHHHHHHHHHHHhCCCEE
Confidence 23456 9999999999999999899
Q ss_pred EEccCCcchhHHHHHHhhcCCcccc
Q 006709 419 HLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 419 ~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
+|++|..++.|+.++++.++.||.|
T Consensus 232 ~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 232 HIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred EEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 9999999999999988768899986
No 15
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=100.00 E-value=2.2e-39 Score=335.61 Aligned_cols=250 Identities=31% Similarity=0.422 Sum_probs=220.5
Q ss_pred eEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccC---C--ccCCCHHHHHHHHHHH
Q 006709 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAA 175 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~---G--~RvT~~~~l~~~~~a~ 175 (634)
++|||+||+++.++ .+++++|+.|+..|.++|||||||++++..++++|++++|++ | .|+|++++|+.+..++
T Consensus 1 ~~ViK~GG~~l~~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~ 78 (268)
T PRK14058 1 MIVVKIGGSVGIDP--EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAM 78 (268)
T ss_pred CEEEEEChHHhhCc--HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHH
Confidence 58999999999875 578999999999999999999999999999999999999987 6 8999999999987667
Q ss_pred hHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecc----cccC----ccccccceEEEecHHHHHHH
Q 006709 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG----VVDG----VDYGATGEVKKVDVTRMRER 247 (634)
Q Consensus 176 G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g----~~~g----~d~g~~G~v~~vd~~~I~~L 247 (634)
+++|..|++. |+++|++ ++++++.+.++++++++. +.+| .|++|+|+++.++.+.|+.+
T Consensus 79 ~~ln~~lv~~---------L~~~Gv~----a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~l 145 (268)
T PRK14058 79 ALINKQLVER---------LQSLGVN----AVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLL 145 (268)
T ss_pred HHHHHHHHHH---------HHhCCCC----ccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHH
Confidence 7999999986 5788988 899999999888877542 2333 68999999999999999999
Q ss_pred HcCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC----CCCccccccCHHHHHHHHHhhchhh
Q 006709 248 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQS 323 (634)
Q Consensus 248 Ld~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld----~~gklI~~ls~~e~~~li~~~~~~~ 323 (634)
|++|+|||++|++++.+|+.+|+|+|.+|++||.+|+||+|+|+|||+|+. +++++|++++.+|+++++.
T Consensus 146 l~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~------ 219 (268)
T PRK14058 146 LKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSK------ 219 (268)
T ss_pred HHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhh------
Confidence 999999999999888889999999999999999999999999999999974 3488999999888776542
Q ss_pred hhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHH
Q 006709 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (634)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~K 403 (634)
+++|| |.+|
T Consensus 220 --------------------------------------------------------------~~tGg---------M~~K 228 (268)
T PRK14058 220 --------------------------------------------------------------AAGGG---------MKKK 228 (268)
T ss_pred --------------------------------------------------------------ccCCc---------cHHH
Confidence 13455 9999
Q ss_pred HHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccc
Q 006709 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (634)
Q Consensus 404 l~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~ 445 (634)
|++|..|++.|++++||+||+.++.|+.++ +|.||.|.+
T Consensus 229 l~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 229 VLMAAEAVEGGVGRVIIADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcchHHHHh---CCCceEEec
Confidence 999999999999999999999999877665 456999864
No 16
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=5.4e-39 Score=329.65 Aligned_cols=248 Identities=23% Similarity=0.329 Sum_probs=222.7
Q ss_pred EEEEECCccCCCCC-hHHHHHHHHHHH-hCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHH-HHhHH
Q 006709 102 FVVIISGEIVSSPY-LDPILKDIAFLH-HLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME-AAGGI 178 (634)
Q Consensus 102 iVIKLGGsvL~~~~-l~~la~dIa~L~-~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~-a~G~i 178 (634)
+|||+||+++++++ +++++++|+.+. ..|.++|||||||++++.+++++++++++.+|+|+|+.+.++.+.. +.+++
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~ 80 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTA 80 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcc
Confidence 59999999998876 889999999875 4678999999999999999999999999999999999999999854 45899
Q ss_pred HHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcC
Q 006709 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (634)
Q Consensus 179 n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~ 258 (634)
|..+++. +.++|++ ++++++.|++++++++.+ .|++++|+++.+|.+.|+.+|+.|+|||+++
T Consensus 81 n~~lv~~---------l~~~Gv~----a~~l~~~~~~~~~~~~~~----~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~ 143 (252)
T cd04249 81 NKQLMAQ---------AIKAGLK----PVGLSLADGGMTAVTQLD----PELGAVGKATANDPSLLNDLLKAGFLPIISS 143 (252)
T ss_pred cHHHHHH---------HHhCCCC----ceeeeccCCCEEEEEEcC----CCCCcccceEEEcHHHHHHHHHCCCEEEECC
Confidence 9999987 3588988 899999999999999864 5899999999999999999999999999999
Q ss_pred CccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhcc
Q 006709 259 LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 337 (634)
Q Consensus 259 v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~ 337 (634)
++.+.+|+++|+|+|.+|+++|.+|+|| +||+|||+|+. .++++|++++.+|+++++..+
T Consensus 144 ~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g------------------ 204 (252)
T cd04249 144 IGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQG------------------ 204 (252)
T ss_pred CEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcC------------------
Confidence 9999999999999999999999999999 78999999974 578999999998888876421
Q ss_pred ccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCce
Q 006709 338 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~r 417 (634)
..+|| |.+|+++|..+++.|+.+
T Consensus 205 ------------------------------------------------~~~gG---------m~~kl~~a~~~~~~~~~~ 227 (252)
T cd04249 205 ------------------------------------------------VITDG---------MIVKVNAALDAAQSLRRG 227 (252)
T ss_pred ------------------------------------------------CCcCC---------cHHHHHHHHHHHHhCCCe
Confidence 13456 999999999999999888
Q ss_pred EEEccCCcchhHHHHHHhhcCCcccc
Q 006709 418 VHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 418 v~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
+||++|+.++. |.++|++++.||+|
T Consensus 228 v~I~~g~~~~~-l~~~l~g~~~GT~I 252 (252)
T cd04249 228 IDIASWQYPEQ-LTALLAGEPVGTKI 252 (252)
T ss_pred EEEEeCCCccH-HHHHHcCCCCCcCC
Confidence 99999998885 78999999999986
No 17
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=8.3e-39 Score=329.39 Aligned_cols=244 Identities=34% Similarity=0.467 Sum_probs=216.1
Q ss_pred EEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccC---C--ccCCCHHHHHHHHHHHh
Q 006709 102 FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAAG 176 (634)
Q Consensus 102 iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~---G--~RvT~~~~l~~~~~a~G 176 (634)
+|||+||+++++ +++++++|+.| |.++|||||||++++..+++++++++|++ | .|+|++++|+.+..+++
T Consensus 1 ~VIKlGGs~l~~--~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~ 75 (257)
T cd04251 1 IVVKIGGSVVSD--LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMG 75 (257)
T ss_pred CEEEEChHHhhC--hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 599999999985 67899999988 89999999999999999999999999985 7 49999999999976669
Q ss_pred HHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeec--------ccccCccccccceEEEecHHHHHHHH
Q 006709 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRK--------GVVDGVDYGATGEVKKVDVTRMRERL 248 (634)
Q Consensus 177 ~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~--------g~~~g~d~g~~G~v~~vd~~~I~~LL 248 (634)
++|..|++. |+++|++ ++++++.+.+++++++. +.....|++|+|+++.+|.+.|+.+|
T Consensus 76 ~ln~~iv~~---------L~~~Gi~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll 142 (257)
T cd04251 76 LINKKIVAR---------LHSLGVK----AVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALL 142 (257)
T ss_pred HHHHHHHHH---------HHhCCCC----ceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHH
Confidence 999999996 5788988 89999999999988865 22233588999999999999999999
Q ss_pred cCCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccCCCCccccccCHHHHHHHHHhhchhhhhHHH
Q 006709 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAAN 328 (634)
Q Consensus 249 d~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld~~gklI~~ls~~e~~~li~~~~~~~~~~~~ 328 (634)
++|+|||++|++++.+|+.+|+|+|.+|++||.+|+||+|+|+||++|+..++++|++++.+|+++++..
T Consensus 143 ~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~---------- 212 (257)
T cd04251 143 DAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEK---------- 212 (257)
T ss_pred hCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhh----------
Confidence 9999999999999999999999999999999999999999999999998777999999999888877521
Q ss_pred HHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHH
Q 006709 329 YVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAA 408 (634)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~ 408 (634)
++|| |.+||++|.
T Consensus 213 ----------------------------------------------------------~~gg---------m~~Kl~aa~ 225 (257)
T cd04251 213 ----------------------------------------------------------AGGG---------MKRKLLAAA 225 (257)
T ss_pred ----------------------------------------------------------CCCc---------hHHHHHHHH
Confidence 2345 999999999
Q ss_pred HHHHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 409 FVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 409 ~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
.+++.|+.++||+||+.++. +..++. |.||.|
T Consensus 226 ~a~~~gv~~v~i~~g~~~~~-l~~~l~--g~gT~i 257 (257)
T cd04251 226 EAVEGGVREVVIGDARADSP-ISSALN--GGGTVI 257 (257)
T ss_pred HHHHcCCCEEEEecCCCccH-HHHHHc--CCCcCC
Confidence 99999999999999999987 445554 468875
No 18
>PRK12352 putative carbamate kinase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=335.15 Aligned_cols=259 Identities=17% Similarity=0.218 Sum_probs=214.0
Q ss_pred CeEEEEECCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 006709 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-----------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l 168 (634)
|++|||+||+++.++. +..+++||++|+..|+++||||||||||+.++.++++.++| .|.|+|+.+
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~-~g~rvt~~~-- 79 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHER-EGLPLTPLA-- 79 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccccc-CCCCCCCHH--
Confidence 7999999999997632 58899999999999999999999999999999999999998 699999997
Q ss_pred HHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCc---ceeEEeeccCCcee-eeeecccc-----------cCcccccc
Q 006709 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR---WHEVGVSVASGNFL-AAKRKGVV-----------DGVDYGAT 233 (634)
Q Consensus 169 ~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~---~~av~l~~~dg~~l-~ak~~g~~-----------~g~d~g~~ 233 (634)
..+.+++|.+.+++.++|++ .|.++|.+.. +.++++++.|++|+ .+||.|++ +++|++|+
T Consensus 80 ~~v~~~~g~i~~~i~~~L~~-----~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~ 154 (316)
T PRK12352 80 NCVADTQGGIGYLIQQALNN-----RLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFV 154 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEe
Confidence 44456777777777777653 6788883311 11478899999999 57888876 56688884
Q ss_pred ce--------------EEEecHHHHHHHHcCCcEEEEc-----CCccCCCCc----eeeechHHHHHHHHHHcCCCEEEE
Q 006709 234 GE--------------VKKVDVTRMRERLDGGCLVILS-----NLGYSSSGE----VLNCNTYEVATACALAIEADKLIC 290 (634)
Q Consensus 234 G~--------------v~~vd~~~I~~LLd~G~IPVv~-----~v~~~~~Ge----i~nid~D~lAa~LA~aL~AdkLI~ 290 (634)
+. |+.||.+.|+.||++|+|||++ |++.+.+|+ .+|||+|.+|+++|.+|+||+|||
T Consensus 155 ~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~ 234 (316)
T PRK12352 155 EDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVI 234 (316)
T ss_pred ecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEE
Confidence 44 9999999999999999997776 777665555 556999999999999999999999
Q ss_pred eecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhc
Q 006709 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (634)
Q Consensus 291 LTDVdgld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
|||++|+. +++++|++++..|+++++.++.
T Consensus 235 LTDV~GV~~d~~~~~~~li~~lt~~e~~~li~~g~--------------------------------------------- 269 (316)
T PRK12352 235 TTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGH--------------------------------------------- 269 (316)
T ss_pred EeCchhhccCCCCCCcccccccCHHHHHHHHhcCC---------------------------------------------
Confidence 99999873 4578999999999999875421
Q ss_pred cccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccc
Q 006709 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (634)
Q Consensus 366 ~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~ 445 (634)
|..|| |.+||++|..|++.|+.+|||++ ++. +.++|+++ .||.|..
T Consensus 270 --------------------i~~Gg---------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 270 --------------------FPPGS---------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHIIK 315 (316)
T ss_pred --------------------cCCCC---------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEEe
Confidence 22355 99999999999999999999997 444 66778765 8999853
No 19
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=100.00 E-value=4.2e-37 Score=311.59 Aligned_cols=228 Identities=32% Similarity=0.507 Sum_probs=205.7
Q ss_pred eEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH-HHHHhHHH
Q 006709 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIR 179 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~-~~a~G~in 179 (634)
++|||+||++++++ +.+++++|+.|+..|.++|||||||++++.++++++++.++.+|.|+|++++++.+ ++.+|++|
T Consensus 1 ~~ViK~GGs~l~~~-~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~ 79 (231)
T TIGR00761 1 TIVIKIGGAAISDL-LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVN 79 (231)
T ss_pred CEEEEEChHHHhcc-HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchH
Confidence 68999999999887 99999999999999999999999999999999999999899999999999999887 45577999
Q ss_pred HHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcCC
Q 006709 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (634)
Q Consensus 180 ~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v 259 (634)
..+++. |+++|++ ++++++.+++++++++. ++.|++++|+++.++.+.|+.+|++|+|||++|+
T Consensus 80 ~~i~~~---------L~~~G~~----a~~l~~~~~~~it~~~~---~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~ 143 (231)
T TIGR00761 80 KELVAL---------LNKHGIN----AIGLTGGDGQLFTARSL---DKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL 143 (231)
T ss_pred HHHHHH---------HHhCCCC----cccccCCCCCEEEEEEC---CCccCCcccceEEEcHHHHHHHHHCCCeEEECCC
Confidence 999886 6788998 89999999999999865 4468999999999999999999999999999999
Q ss_pred ccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-CC-CccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhcc
Q 006709 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ES-GHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 337 (634)
Q Consensus 260 ~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~~-gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~ 337 (634)
+.+.+|+++|+|+|.+|++||.+|+||+|+|+||+||+. .+ +++|++++.+|+++++..+
T Consensus 144 ~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~~~------------------ 205 (231)
T TIGR00761 144 ALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIEQG------------------ 205 (231)
T ss_pred ccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHHcC------------------
Confidence 999899999999999999999999999999999999974 33 4599999998888876321
Q ss_pred ccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCce
Q 006709 338 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~r 417 (634)
..+|| |.+||++|..|++.|+++
T Consensus 206 ------------------------------------------------~~tgg---------m~~Kl~~a~~a~~~gv~~ 228 (231)
T TIGR00761 206 ------------------------------------------------IITGG---------MIPKVNAALEALRGGVKS 228 (231)
T ss_pred ------------------------------------------------CCCCc---------hHHHHHHHHHHHHcCCCE
Confidence 24566 999999999999999999
Q ss_pred EEE
Q 006709 418 VHL 420 (634)
Q Consensus 418 v~I 420 (634)
+||
T Consensus 229 v~i 231 (231)
T TIGR00761 229 VHI 231 (231)
T ss_pred EEC
Confidence 986
No 20
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.5e-33 Score=289.05 Aligned_cols=238 Identities=18% Similarity=0.240 Sum_probs=198.1
Q ss_pred eEEEEECCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 006709 101 TFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~---------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~ 171 (634)
++||||||++|++++ +++++++|+.++ |.++|||||||++++..++++|+++ |.|++++..|..+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~----g~~~~~~~~l~~~ 74 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPD----GDGSFSAEGVAET 74 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCc----CCCchhhhhHHHH
Confidence 489999999998753 456677777665 9999999999999999999999976 7789999999988
Q ss_pred HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCC
Q 006709 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (634)
Q Consensus 172 ~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G 251 (634)
..+++++|..++++ |.++|++ ++++++.+. +.+. .|++..++.+.|+.+|+.|
T Consensus 75 ~~~~~~ln~~~~~~---------l~~~g~~----a~~l~~~~~--~~~~------------~g~~~~~~~~~l~~ll~~g 127 (252)
T cd04241 75 HEAMLELNSIVVDA---------LLEAGVP----AVSVPPSSF--FVTE------------NGRIVSFDLEVIKELLDRG 127 (252)
T ss_pred HHHHHHHHHHHHHH---------HHHCCCC----eEEEChHHe--EEec------------CCeeeeecHHHHHHHHhCC
Confidence 77778999888886 5788988 777777663 2221 4788899999999999999
Q ss_pred cEEEEcCC-ccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-C---CCccccccCHHHHHHHHHhhchhhhhH
Q 006709 252 CLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-E---SGHLIRFLTLQEADSLIRQRVKQSEIA 326 (634)
Q Consensus 252 ~IPVv~~v-~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~---~gklI~~ls~~e~~~li~~~~~~~~~~ 326 (634)
+|||+++. +.+..++.+|+|+|.+|+++|.+|+||+|+|+|||||+. . ++++|++++.+++++++....
T Consensus 128 ~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~------ 201 (252)
T cd04241 128 FVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALG------ 201 (252)
T ss_pred CEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcC------
Confidence 99999874 467778899999999999999999999999999999974 2 699999999988877764200
Q ss_pred HHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHH
Q 006709 327 ANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAA 406 (634)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~A 406 (634)
++ .++.+|| |.+||++
T Consensus 202 ------------------------------------------------~~-------~~~~tGG---------m~~Kl~a 217 (252)
T cd04241 202 ------------------------------------------------SA-------GTDVTGG---------MAGKIEE 217 (252)
T ss_pred ------------------------------------------------cC-------CccccCC---------HHHHHHH
Confidence 00 0135677 9999999
Q ss_pred HHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 407 AAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 407 A~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
|..++++|++ +||+||..++. +.++++++..||.|
T Consensus 218 a~~a~~~Gv~-v~I~~g~~~~~-l~~~l~g~~~GT~i 252 (252)
T cd04241 218 LLELARRGIE-VYIFNGDKPEN-LYRALLGNFIGTRI 252 (252)
T ss_pred HHHHHhcCCe-EEEEeCCCHHH-HHHHHcCCCCceEC
Confidence 9999999997 99999999876 67888888899975
No 21
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.98 E-value=9.8e-31 Score=276.35 Aligned_cols=261 Identities=19% Similarity=0.222 Sum_probs=192.4
Q ss_pred cCCeEEEEECCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 006709 98 RGGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (634)
Q Consensus 98 r~k~iVIKLGGsvL~~~~---------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l 168 (634)
+++++||||||++|++++ +..++++|+.|++.|+++|||||||+|++..+...+..+.+.. ++++....
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~--~~~~~~~~ 78 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKN--KVPAMPLD 78 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCC--CCCCchhH
Confidence 468999999999999865 6899999999999999999999999999887666555433221 45655444
Q ss_pred HHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcce----eEEeeccCCce-eeeeecccc------------cCcccc
Q 006709 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNF-LAAKRKGVV------------DGVDYG 231 (634)
Q Consensus 169 ~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~----av~l~~~dg~~-l~ak~~g~~------------~g~d~g 231 (634)
..+...+|.+.+.++.+|++ .|.++|++.+.. .+-++..|..| ..++|.|++ +|.||.
T Consensus 79 ~~~a~~qg~l~~~l~~~~~~-----~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~ 153 (314)
T PRK12353 79 VCGAMSQGYIGYHLQNALRN-----ELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFK 153 (314)
T ss_pred HHHHHHhHHHHHHHHHHHHH-----HHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceee
Confidence 44467888888888888753 788888753322 22334444446 556777765 455555
Q ss_pred c-cce-EEE----------ecHHHHHHHHcCCcEEEEcCCccC----CCCce----eeechHHHHHHHHHHcCCCEEEEe
Q 006709 232 A-TGE-VKK----------VDVTRMRERLDGGCLVILSNLGYS----SSGEV----LNCNTYEVATACALAIEADKLICI 291 (634)
Q Consensus 232 ~-~G~-v~~----------vd~~~I~~LLd~G~IPVv~~v~~~----~~Gei----~nid~D~lAa~LA~aL~AdkLI~L 291 (634)
+ +++ .+. +|.+.|+.||++|+|||+++.+.. .++.+ .|+|+|.+|+++|.+|+||+|||+
T Consensus 154 ~~~~~~~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~l 233 (314)
T PRK12353 154 EDAGRGYRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIIL 233 (314)
T ss_pred ecCCceeEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEE
Confidence 5 332 333 789999999999999999965322 22222 369999999999999999999999
Q ss_pred ecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhcc
Q 006709 292 IDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIAT 366 (634)
Q Consensus 292 TDVdgld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (634)
|||||++ +++++|++++.++++.++..+.
T Consensus 234 TdvdGVy~~~~~~~a~~i~~i~~~e~~~~~~~~~---------------------------------------------- 267 (314)
T PRK12353 234 TAVDKVYINFGKPNQKKLDEVTVSEAEKYIEEGQ---------------------------------------------- 267 (314)
T ss_pred eCCccccCCCCCCCCeECcCcCHHHHHHHHhcCC----------------------------------------------
Confidence 9999973 3589999999888877753211
Q ss_pred ccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHH-HcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 367 FNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC-RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 367 ~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~-~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
+.+|| |.+||++|..++ +.+...|+|++ ++. +.+++.++ .||.|.
T Consensus 268 -------------------~~tGG---------M~~Kl~aA~~a~~~~~g~~v~I~~---~~~-i~~~l~g~-~GT~i~ 313 (314)
T PRK12353 268 -------------------FAPGS---------MLPKVEAAISFVESRPGRKAIITS---LEK-AKEALEGK-AGTVIV 313 (314)
T ss_pred -------------------cCCCC---------cHHHHHHHHHHHHHcCCCEEEECC---chH-HHHHhCCC-CCeEec
Confidence 23456 999999999999 44444589997 344 45666665 899985
No 22
>PRK12686 carbamate kinase; Reviewed
Probab=99.97 E-value=3.7e-31 Score=277.28 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=196.0
Q ss_pred CCeEEEEECCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHH-HcCCcccccCCccCCCHHHH
Q 006709 99 GGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS-ERGHEAKYLGRYRITDSESL 168 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~---------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~-~lg~~~~~~~G~RvT~~~~l 168 (634)
++++|||+|||+|.++. .+..+++|+.|.+.|+++|||||+|||++..+. ..+.... ..++.+|
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~------~~~~~pl 75 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSN------KVPAMPL 75 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhcccc------CCCCCCh
Confidence 68999999999998754 478999999999999999999999999995544 4444432 1466778
Q ss_pred HHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcce----eEEeeccCCceee-eeecccc------------c----
Q 006709 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV------------D---- 226 (634)
Q Consensus 169 ~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~----av~l~~~dg~~l~-ak~~g~~------------~---- 226 (634)
+++ .+++|.+.++|+++|.+ .|.++++..++. .+-++..|..|.. .|+.|+. .
T Consensus 76 ~~~~a~sqg~iGy~~~q~l~~-----~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~ 150 (312)
T PRK12686 76 DTCVAMSQGMIGYWLQNALNN-----ELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTF 150 (312)
T ss_pred hhhhhhccchhhHHHHHHHHH-----HHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcc
Confidence 886 68999999999999864 788888776544 3456677777776 3455541 1
Q ss_pred Ccc--ccccceEEE------ecHHHHHHHHcCCcEEEEc-----CCccCCCCce----eeechHHHHHHHHHHcCCCEEE
Q 006709 227 GVD--YGATGEVKK------VDVTRMRERLDGGCLVILS-----NLGYSSSGEV----LNCNTYEVATACALAIEADKLI 289 (634)
Q Consensus 227 g~d--~g~~G~v~~------vd~~~I~~LLd~G~IPVv~-----~v~~~~~Gei----~nid~D~lAa~LA~aL~AdkLI 289 (634)
..| .||.+.|.+ ++.+.|+.||++|+|||.+ |+..+ ++.+ .++|+|.+|++||.+|+||+||
T Consensus 151 ~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~-~~~~~gv~avid~D~~Aa~LA~~L~Ad~LI 229 (312)
T PRK12686 151 KEDAGRGYRRVVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRD-DNTLKGVEAVIDKDFASEKLAEQIDADLLI 229 (312)
T ss_pred cccCCCCeEEeeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEec-CCcEEeeecccCccHHHHHHHHHcCCCEEE
Confidence 123 388888866 9999999999999999876 44333 3333 3789999999999999999999
Q ss_pred EeecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchh
Q 006709 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (634)
Q Consensus 290 ~LTDVdgld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (634)
|||||+|++ +++++|++++.+|++.++.++
T Consensus 230 iLTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~~g--------------------------------------------- 264 (312)
T PRK12686 230 ILTGVENVFINFNKPNQQKLDDITVAEAKQYIAEG--------------------------------------------- 264 (312)
T ss_pred EEeCchhhccCCCCCCCeECCccCHHHHHHHhhCC---------------------------------------------
Confidence 999999973 468999999999888876431
Q ss_pred ccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCC-ceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV-QRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 365 ~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv-~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
.|++|| |.+|++||..+++.|+ .+++|.+ .+. +.+++.++ .||.|
T Consensus 265 --------------------~~~tGG---------M~pKveAA~~av~~g~g~~viI~~---~~~-i~~aL~G~-~GT~I 310 (312)
T PRK12686 265 --------------------QFAPGS---------MLPKVEAAIDFVESGEGKKAIITS---LEQ-AKEALAGN-AGTHI 310 (312)
T ss_pred --------------------CccCCC---------cHHHHHHHHHHHHhCCCCEEEEeC---chH-HHHHhCCC-CCeEE
Confidence 145677 9999999999998764 4567776 333 44666554 89988
Q ss_pred c
Q 006709 444 A 444 (634)
Q Consensus 444 ~ 444 (634)
.
T Consensus 311 ~ 311 (312)
T PRK12686 311 T 311 (312)
T ss_pred e
Confidence 4
No 23
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.97 E-value=6.9e-31 Score=274.83 Aligned_cols=258 Identities=21% Similarity=0.228 Sum_probs=200.8
Q ss_pred CCeEEEEECCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHH
Q 006709 99 GGTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSES 167 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-----------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~ 167 (634)
++++||+|||++|..+. ++..+++|+.|.+.|+++|||||+|||++.++.+....... -+++.+
T Consensus 2 ~~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~-----~~~~~p 76 (313)
T PRK12454 2 KKRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDV-----GIPPFP 76 (313)
T ss_pred CceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhccc-----CCCCCc
Confidence 47999999999997632 56789999999999999999999999999887765433210 135566
Q ss_pred HHHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcce----eEEeeccCCceee-eeeccccc------------C--
Q 006709 168 LAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVVD------------G-- 227 (634)
Q Consensus 168 l~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~----av~l~~~dg~~l~-ak~~g~~~------------g-- 227 (634)
|+.+ .+++|.+.+.|+.+|.+ .|.++|++.++. .+.|+..|+.|.. .||.|+.- +
T Consensus 77 ld~~~a~sqG~igy~l~~al~~-----~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~ 151 (313)
T PRK12454 77 LDVAGAMTQGWIGYMIQQALRN-----ELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWI 151 (313)
T ss_pred cchhhhhhhHHHHHHHHHHHHH-----HHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCE
Confidence 7776 67999999999999864 799999887655 3567777887877 45666520 0
Q ss_pred ----ccccccce------EEEecHHHHHHHHcCCcEEEEcCCc----cCCCCceee----echHHHHHHHHHHcCCCEEE
Q 006709 228 ----VDYGATGE------VKKVDVTRMRERLDGGCLVILSNLG----YSSSGEVLN----CNTYEVATACALAIEADKLI 289 (634)
Q Consensus 228 ----~d~g~~G~------v~~vd~~~I~~LLd~G~IPVv~~v~----~~~~Gei~n----id~D~lAa~LA~aL~AdkLI 289 (634)
...||... ++.+|.+.|+.||++|.|||+++.+ ++.+|++++ +|+|.+|++||.+|+||+||
T Consensus 152 ~~~d~g~g~RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LI 231 (313)
T PRK12454 152 VKEDAGRGWRRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFI 231 (313)
T ss_pred EEEcCCCceEEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEE
Confidence 12233332 3689999999999999999999543 556666665 58899999999999999999
Q ss_pred EeecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchh
Q 006709 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (634)
Q Consensus 290 ~LTDVdgld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (634)
|||||+|+. +++++|++++.+|+++++.++
T Consensus 232 iLTdVdGVy~~~~~p~~~~i~~It~~e~~~~i~~g--------------------------------------------- 266 (313)
T PRK12454 232 ILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEG--------------------------------------------- 266 (313)
T ss_pred EEeCCceeeCCCCCCCCeEccccCHHHHHHHHhcC---------------------------------------------
Confidence 999999873 578999999999988887431
Q ss_pred ccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 365 ~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
.|++|| |.+||+||..+++.|+.+++|.+. +. +.+++.++ .||.|.
T Consensus 267 --------------------~~~~Gg---------M~pKv~AA~~~v~~gg~~a~I~~~---~~-i~~aL~G~-~GT~I~ 312 (313)
T PRK12454 267 --------------------HFKAGS---------MGPKILAAIRFVENGGKRAIIASL---EK-AVEALEGK-TGTRII 312 (313)
T ss_pred --------------------CcCCCC---------hHHHHHHHHHHHHcCCCeEEECch---HH-HHHHHCCC-CCeEeC
Confidence 145567 999999999999999889999863 33 55666555 899985
Q ss_pred c
Q 006709 445 S 445 (634)
Q Consensus 445 ~ 445 (634)
+
T Consensus 313 ~ 313 (313)
T PRK12454 313 P 313 (313)
T ss_pred C
Confidence 3
No 24
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=3.8e-31 Score=275.76 Aligned_cols=239 Identities=21% Similarity=0.290 Sum_probs=189.9
Q ss_pred CCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~ 171 (634)
.+++|||+|+|+|+++. ++.++++|+.|++.|++||||++| +|..++..+|++. |.++....|++
T Consensus 6 ~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSG--AiaaG~~~Lg~~~------rp~~l~~kQA~ 77 (369)
T COG0263 6 ARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSG--AIAAGRTRLGLPK------RPKTLAEKQAA 77 (369)
T ss_pred ceEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccc--hhhhChhhcCCCC------CCcchHHHHHH
Confidence 47999999999999874 789999999999999999999999 7888889999986 45555555554
Q ss_pred HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecH-HHHHHHHcC
Q 006709 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDG 250 (634)
Q Consensus 172 ~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~-~~I~~LLd~ 250 (634)
+++||.. |++.|+ +.|.+||+. ..++..+-.+|.. +.+..|. ++|..||+.
T Consensus 78 -AAVGQ~~--Lm~~y~-----~~f~~~g~~----v~QiLLTr~D~~~----------------r~ry~Nar~Tl~~Ll~~ 129 (369)
T COG0263 78 -AAVGQVR--LMQLYE-----ELFARYGIK----VGQILLTRDDFSD----------------RRRYLNARNTLSALLEL 129 (369)
T ss_pred -HHhCHHH--HHHHHH-----HHHHhcCCe----eeEEEeehhhhhh----------------HHHHHHHHHHHHHHHHC
Confidence 6788876 777775 379999987 2333222222222 1234454 999999999
Q ss_pred CcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeeccccc-------CCCCccccccCHH--HHHHHHHhhch
Q 006709 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-------DESGHLIRFLTLQ--EADSLIRQRVK 321 (634)
Q Consensus 251 G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgl-------d~~gklI~~ls~~--e~~~li~~~~~ 321 (634)
|.|||||+++..+..|+.+.|||.+|+.+|..++||.|++|||+||+ +|++++|++++.. |++.+
T Consensus 130 gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~------ 203 (369)
T COG0263 130 GVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAM------ 203 (369)
T ss_pred CceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHH------
Confidence 99999999999999999999999999999999999999999999998 3678898888632 33322
Q ss_pred hhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCH
Q 006709 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (634)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~ 401 (634)
+ + +.++. +.||| |.
T Consensus 204 ------------a-----------------g---------------gsgs~-------------~GTGG---------M~ 217 (369)
T COG0263 204 ------------A-----------------G---------------GSGSE-------------LGTGG---------MR 217 (369)
T ss_pred ------------h-----------------c---------------CCCCC-------------CCccc---------HH
Confidence 1 1 01222 45677 99
Q ss_pred HHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccccc
Q 006709 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (634)
Q Consensus 402 ~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~ 447 (634)
+||.||..|+++|++ +.|.+|..++. +.+++.+...||.|.+..
T Consensus 218 TKl~AA~iA~~aG~~-~iI~~g~~~~~-i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 218 TKLEAAKIATRAGVP-VIIASGSKPDV-ILDALEGEAVGTLFEPQA 261 (369)
T ss_pred HHHHHHHHHHHcCCc-EEEecCCCcch-HHHHHhCCCCccEEecCC
Confidence 999999999999998 89999999986 667788889999998653
No 25
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.97 E-value=7e-31 Score=267.15 Aligned_cols=237 Identities=30% Similarity=0.399 Sum_probs=204.4
Q ss_pred EEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHHHHH
Q 006709 103 VVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM 181 (634)
Q Consensus 103 VIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~in~~ 181 (634)
||||||+++++++ +++++++|+.+++.|+++|||||||++++..+.+++....+..+.++++.+.+..+....+..+..
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLL 80 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999998854 899999999999899999999999999999999998877777788988888877776666777777
Q ss_pred HHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcCCcc
Q 006709 182 IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY 261 (634)
Q Consensus 182 Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v~~ 261 (634)
+++. |+++|++ +..+++.+..+... +++++|.+..++.+.|+++|+.|.|||+++++.
T Consensus 81 ~~~~---------l~~~gi~----a~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~ 138 (248)
T cd02115 81 IAAA---------LEQHGIK----AVPLDLTQAGFASP---------NQGHVGKITKVSTDRLKSLLENGILPILSGFGG 138 (248)
T ss_pred HHHH---------HHhCCCC----eEEEchHHcCeEeC---------CCCCcccceeeCHHHHHHHHhCCcEEEecCeEe
Confidence 7775 6788988 78887777655432 568889999999999999999999999999876
Q ss_pred CC---CCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhchhhhhHHHHHH
Q 006709 262 SS---SGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVK 331 (634)
Q Consensus 262 ~~---~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~ 331 (634)
.+ .+++.++++|.+|+.+|.+|+||+|+|+|||+|+. +++++|++++.+|++++...
T Consensus 139 ~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~------------- 205 (248)
T cd02115 139 TDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA------------- 205 (248)
T ss_pred ccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHc-------------
Confidence 55 67889999999999999999999999999999972 24999999999888877531
Q ss_pred hhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHH
Q 006709 332 AVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC 411 (634)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~ 411 (634)
|+ |..|++++..+.
T Consensus 206 ---------------------------------------------------------g~---------~~~k~~a~~~~~ 219 (248)
T cd02115 206 ---------------------------------------------------------GA---------MVLKPKAADPAA 219 (248)
T ss_pred ---------------------------------------------------------CC---------CccCHHHHHHHH
Confidence 12 888999999999
Q ss_pred HcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 412 RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 412 ~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
+.|+ +++|+++..++.| ++|++++.||+|
T Consensus 220 ~~~~-~v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 220 RAGI-PVRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred HcCC-cEEEEeCCCcccc--cccCCCCCCCCC
Confidence 9996 5999999999885 999999999986
No 26
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.97 E-value=1.9e-29 Score=265.25 Aligned_cols=255 Identities=19% Similarity=0.202 Sum_probs=186.2
Q ss_pred CeEEEEECCccCCCC------C-----hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 006709 100 GTFVVIISGEIVSSP------Y-----LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (634)
Q Consensus 100 k~iVIKLGGsvL~~~------~-----l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l 168 (634)
|+||||+|||+|..+ + ++.++++|+.|.+.|++||||||||||++.........+ ..++...|
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~------~~~~~~p~ 74 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAAD------SEVPAMPL 74 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhcccccc------ccCCCCcc
Confidence 689999999999842 1 578999999999999999999999999987654332211 12344457
Q ss_pred HHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcce----eEEeeccCCceeeee-ecccc-----------------
Q 006709 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLAAK-RKGVV----------------- 225 (634)
Q Consensus 169 ~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~----av~l~~~dg~~l~ak-~~g~~----------------- 225 (634)
+++ .+.+|.+.+.+..+|++ .|.++|++.++. ++.++..|..|-... +.|+.
T Consensus 75 ~~~~A~~qg~lg~~~~~~l~~-----~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~ 149 (310)
T TIGR00746 75 DVLGAMSQGMIGYMLQQALNN-----ELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIV 149 (310)
T ss_pred hHHHHhhHHHHHHHHHHHHHH-----HHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeE
Confidence 775 67899999999888753 577888765444 456666666666533 33321
Q ss_pred -cCccccccce------EEEecHHHHHHHHcCCcEEEEcCCcc----CCC----CceeeechHHHHHHHHHHcCCCEEEE
Q 006709 226 -DGVDYGATGE------VKKVDVTRMRERLDGGCLVILSNLGY----SSS----GEVLNCNTYEVATACALAIEADKLIC 290 (634)
Q Consensus 226 -~g~d~g~~G~------v~~vd~~~I~~LLd~G~IPVv~~v~~----~~~----Gei~nid~D~lAa~LA~aL~AdkLI~ 290 (634)
+...+||... ++.++.++|+.||++|.|+|.++-+. ..+ |...|+|+|.+|+++|.+|+||+|||
T Consensus 150 ~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIi 229 (310)
T TIGR00746 150 KEDAGRGWRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVI 229 (310)
T ss_pred eecCCCcceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEE
Confidence 0012333332 24789999999999998544442211 122 33458999999999999999999999
Q ss_pred eecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhc
Q 006709 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (634)
Q Consensus 291 LTDVdgld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
||||||++ +++++|++++.+|++.++..+
T Consensus 230 LTDVdGVy~~~~~p~a~~i~~it~~e~~~~~~~g---------------------------------------------- 263 (310)
T TIGR00746 230 LTDVDAVYINYGKPDEKALREVTVEELEDYYKAG---------------------------------------------- 263 (310)
T ss_pred EeCCCceeCCCCCCCCcCCcCcCHHHHHHHHhcC----------------------------------------------
Confidence 99999973 568999999998887775321
Q ss_pred cccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 366 ~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
.|.+|| |.+||+||..+++.|+.+++|++ .+. +.+++.++ .||.|.
T Consensus 264 -------------------~~~tGg---------M~~Kl~AA~~~~~~g~~~v~I~~---~~~-i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 264 -------------------HFAAGS---------MGPKVEAAIEFVESGGKRAIITS---LEN-AVEALEGK-AGTRVT 309 (310)
T ss_pred -------------------CcCCCC---------cHHHHHHHHHHHHhCCCeEEEec---hHH-HHHHHCCC-CCcEEe
Confidence 145567 99999999999999888899997 343 66777777 899984
No 27
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.96 E-value=6.9e-29 Score=251.60 Aligned_cols=223 Identities=32% Similarity=0.430 Sum_probs=190.3
Q ss_pred CeEEEEECCccCCCC--ChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH-HHHHh
Q 006709 100 GTFVVIISGEIVSSP--YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAG 176 (634)
Q Consensus 100 k~iVIKLGGsvL~~~--~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~-~~a~G 176 (634)
|++|||+||++++++ .+.+++++|+.+.+.|.++|||||||++++.+++++++.+++.++.|+|+......+ +.+++
T Consensus 1 k~~ViK~GGs~l~~~~~~~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 80 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEELRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLIITMAAAA 80 (242)
T ss_dssp SEEEEEE-HHGHSSHSHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHHHHHHHHH
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHHHHHHHhh
Confidence 689999999999997 589999999999999999999999999999999999999999888899998888776 66677
Q ss_pred HHHH-----HHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCC
Q 006709 177 GIRM-----MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (634)
Q Consensus 177 ~in~-----~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G 251 (634)
.+|. .+++. +..++.. ++++.+.+.++....+.. ..++.+.|+.+|++|
T Consensus 81 ~l~~~~~~~~i~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l~~~ 134 (242)
T PF00696_consen 81 ELNRDALLDEIVSA---------GERLGAH----AVGLSLSDGGISAAKRDA-------------REVDKEAIRELLEQG 134 (242)
T ss_dssp HHHHHHHHHHHHHH---------HHHCTHH----EEEHHHTGGTEEEEEEES-------------SEEHHHHHHHHHHTT
T ss_pred ccccchhHHHHHHh---------hhhhhHH----HHhhhhhcccchhhhhhh-------------hhhHHHHHHHHHHCC
Confidence 7777 55554 5666665 788888887766654311 157899999999999
Q ss_pred cEEEEcCCc-cCCCCce---eeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhc
Q 006709 252 CLVILSNLG-YSSSGEV---LNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRV 320 (634)
Q Consensus 252 ~IPVv~~v~-~~~~Gei---~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~ 320 (634)
.|||++|.. .+.+|++ .++++|.+|++||.+|+|++|+|+|||||+. +++++|++|+.+|+.++....
T Consensus 135 ~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~- 213 (242)
T PF00696_consen 135 IIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKS- 213 (242)
T ss_dssp SEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHT-
T ss_pred CEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcC-
Confidence 999999986 7888988 9999999999999999999999999999873 478999999999999886421
Q ss_pred hhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCC
Q 006709 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (634)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m 400 (634)
++++|| |
T Consensus 214 ----------------------------------------------------------------~~~~~g---------m 220 (242)
T PF00696_consen 214 ----------------------------------------------------------------GDVTGG---------M 220 (242)
T ss_dssp ----------------------------------------------------------------TSSTTT---------H
T ss_pred ----------------------------------------------------------------CCCCCC---------H
Confidence 134566 9
Q ss_pred HHHHHHHHHHHHcCCceEEEcc
Q 006709 401 LSELAAAAFVCRRGVQRVHLLD 422 (634)
Q Consensus 401 ~~Kl~AA~~a~~~Gv~rv~I~~ 422 (634)
..|+.+|..+|+.|+.+|+|+|
T Consensus 221 ~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 221 KPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEeC
Confidence 9999999999999888899986
No 28
>PRK09411 carbamate kinase; Reviewed
Probab=99.96 E-value=2.2e-28 Score=253.57 Aligned_cols=245 Identities=22% Similarity=0.191 Sum_probs=191.1
Q ss_pred CeEEEEECCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 006709 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-----------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l 168 (634)
+++||.||||+|..+. ++..++.|+.|.+. +++||+||+|||++.++.+..... -.++.+|
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~-------~~~~~pl 73 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWK-------EVEPYPL 73 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhc-------CCCCCCc
Confidence 6899999999997622 46788999999887 999999999999998876644322 1266778
Q ss_pred HHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcce----eEEeeccCCceee-eeecccc------------cC---
Q 006709 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV------------DG--- 227 (634)
Q Consensus 169 ~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~----av~l~~~dg~~l~-ak~~g~~------------~g--- 227 (634)
+++ .+++|.|.++|+++|. ..+++.++. ++-++..|+.|.. .||.|++ +|
T Consensus 74 d~~~a~sqG~iGy~l~q~l~---------~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~ 144 (297)
T PRK09411 74 DVLVAESQGMIGYMLAQSLS---------AQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQM 144 (297)
T ss_pred hhhhhhcccHHHHHHHHHHH---------HcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEE
Confidence 886 6899999999999864 446554444 4577888888877 4566642 11
Q ss_pred -ccccccceE-------EEecHHHHHHHHcCCcEEEEc-----CCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecc
Q 006709 228 -VDYGATGEV-------KKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDG 294 (634)
Q Consensus 228 -~d~g~~G~v-------~~vd~~~I~~LLd~G~IPVv~-----~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDV 294 (634)
.|-.+.++| +.+|.+.|+.||++|+|||++ |+..+.+|...|+|+|.+|+.||.+|+||+|||||||
T Consensus 145 ~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDV 224 (297)
T PRK09411 145 KRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDA 224 (297)
T ss_pred EecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCc
Confidence 243456777 899999999999999998887 6666556888999999999999999999999999999
Q ss_pred cccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccC
Q 006709 295 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 369 (634)
Q Consensus 295 dgld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (634)
+|+. +++++|++++.+|++.++.
T Consensus 225 dGV~~n~~~p~~~~I~~it~~e~~~~~~---------------------------------------------------- 252 (297)
T PRK09411 225 DAVYENWGTPQQRAIRHATPDELAPFAK---------------------------------------------------- 252 (297)
T ss_pred hhhccCCCCCCCcCCCCcCHHHHHHhcc----------------------------------------------------
Confidence 9873 4679999999988766531
Q ss_pred CcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 370 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 370 ~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
++|| |.+|++||..+++.|..+++|.+ .+. +.+++.++ .||.|.
T Consensus 253 -----------------~~Gg---------M~pKVeAA~~~v~~~g~~a~I~~---l~~-~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 253 -----------------ADGA---------MGPKVTAVSGYVRSRGKPAWIGA---LSR-IEETLAGE-AGTCIS 296 (297)
T ss_pred -----------------CCCC---------cHHHHHHHHHHHHhCCCeEEECC---hhH-HHHHHCCC-CCeEEe
Confidence 1244 99999999999998888888865 232 45666554 799874
No 29
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=3.2e-28 Score=254.99 Aligned_cols=253 Identities=20% Similarity=0.223 Sum_probs=190.6
Q ss_pred eEEEEECCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHH
Q 006709 101 TFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-----------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~ 169 (634)
++||||||++|..+. ++..+++|+.|.+.|+++|||||+|||++.++....... ..++...|+
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~------~~~~~~pld 74 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAA------EKVPAYPLD 74 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc------ccCCCCCcc
Confidence 589999999996421 678999999999999999999999999998887654432 123455666
Q ss_pred HH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCccee----EEeeccCCceee-eeecccc-c-----------C----
Q 006709 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHE----VGVSVASGNFLA-AKRKGVV-D-----------G---- 227 (634)
Q Consensus 170 ~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~a----v~l~~~dg~~l~-ak~~g~~-~-----------g---- 227 (634)
.+ ...+|.+.+.|..+|++ .|.+.|++.++.+ +.+...|+.|.. .||.|.. + +
T Consensus 75 ~~~a~~~G~ig~~~~~al~~-----~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~ 149 (308)
T cd04235 75 VCGAMSQGMIGYMLQQALDN-----ELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFK 149 (308)
T ss_pred hhcchhhHHHHHHHHHHHHH-----HHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEE
Confidence 65 57899999999888864 7899998765543 356666776666 3455532 1 0
Q ss_pred cc--ccccc------eEEEecHHHHHHHHcCCcEEEEc-----CCccCCCCce----eeechHHHHHHHHHHcCCCEEEE
Q 006709 228 VD--YGATG------EVKKVDVTRMRERLDGGCLVILS-----NLGYSSSGEV----LNCNTYEVATACALAIEADKLIC 290 (634)
Q Consensus 228 ~d--~g~~G------~v~~vd~~~I~~LLd~G~IPVv~-----~v~~~~~Gei----~nid~D~lAa~LA~aL~AdkLI~ 290 (634)
.| .||.. .++.++.+.|+.||++|+|||++ |+..+. +.+ .++|+|.+|+++|.+|+||+|++
T Consensus 150 ~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~-~~~~gveaVid~D~~AallA~~l~Ad~Lii 228 (308)
T cd04235 150 EDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREG-GGLKGVEAVIDKDLASALLAEEINADLLVI 228 (308)
T ss_pred EeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcC-CceeeeeeccCccHHHHHHHHHcCCCEEEE
Confidence 01 22332 23688999999999999999998 444433 433 35799999999999999999999
Q ss_pred eecccccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhc
Q 006709 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (634)
Q Consensus 291 LTDVdgld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
+|||||++ +++++|++++.+|+.+++.++
T Consensus 229 lTdVdGVy~~~~~pda~~i~~Is~~e~~~l~~~g---------------------------------------------- 262 (308)
T cd04235 229 LTDVDNVYINFGKPNQKALEQVTVEELEKYIEEG---------------------------------------------- 262 (308)
T ss_pred EecCCeEECCCCCCCCeEcCCcCHHHHHHHHhcC----------------------------------------------
Confidence 99999973 468999999998888876431
Q ss_pred cccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 366 ~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
.|++|| |.+|+++|..+++.|..+++|.+ .+. +.+++.++ .||.|.
T Consensus 263 -------------------~~~tGG---------M~pKv~aA~~~a~~gg~~v~I~~---~~~-i~~aL~G~-~GT~I~ 308 (308)
T cd04235 263 -------------------QFAPGS---------MGPKVEAAIRFVESGGKKAIITS---LEN-AEAALEGK-AGTVIV 308 (308)
T ss_pred -------------------ccccCC---------cHHHHHHHHHHHHhCCCeEEECC---HHH-HHHHHCCC-CCeEEC
Confidence 145667 99999999999998877788877 333 55666555 799873
No 30
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=1.7e-28 Score=263.89 Aligned_cols=237 Identities=20% Similarity=0.272 Sum_probs=177.5
Q ss_pred CCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~ 171 (634)
++++|||+||++|++++ +..++++|+.|++.|++|||||||+++++. .+++.. ++.+++..+++
T Consensus 5 ~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~--~~l~~~----~~~~~~~~qal--- 75 (368)
T PRK13402 5 WKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY--HKLGFI----DRPSVPEKQAM--- 75 (368)
T ss_pred CcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc--cccCCC----CCCCccHHHHH---
Confidence 58999999999998742 688999999999999999999999877765 455532 23355554433
Q ss_pred HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEec-HHHHHHHHcC
Q 006709 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG 250 (634)
Q Consensus 172 ~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd-~~~I~~LLd~ 250 (634)
+++||.. ++..|. ..|+++|++ +.++...+.+|...++ ..+ .++|+.||+.
T Consensus 76 -aavGq~~--l~~~~~-----~~f~~~g~~----~aqvLlT~~d~~~~~~----------------y~n~~~~l~~LL~~ 127 (368)
T PRK13402 76 -AAAGQGL--LMATWS-----KLFLSHGFP----AAQLLLTHGDLRDRER----------------YINIRNTINVLLER 127 (368)
T ss_pred -HHhhHHH--HHHHHH-----HHHHHCCCe----EEEEEEecchhhhHHH----------------HHHHHHHHHHHHHC
Confidence 4566665 444442 268999998 5565545444421111 112 3799999999
Q ss_pred CcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH--HHHHHHHHhhch
Q 006709 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVK 321 (634)
Q Consensus 251 G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~--~e~~~li~~~~~ 321 (634)
|+|||+++++...+.++.++|+|.+|+++|.+++||.|+|+|||||++ |++++|++|+. +++..+...
T Consensus 128 g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~--- 204 (368)
T PRK13402 128 GILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGG--- 204 (368)
T ss_pred CcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcc---
Confidence 999999987655556788999999999999999999999999999972 36899999985 344333110
Q ss_pred hhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCH
Q 006709 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (634)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~ 401 (634)
.+++ +.+|| |.
T Consensus 205 -----------------------------------------------~~s~-------------~gtGG---------M~ 215 (368)
T PRK13402 205 -----------------------------------------------AGSN-------------VGTGG---------MR 215 (368)
T ss_pred -----------------------------------------------cccC-------------cCcCC---------ch
Confidence 0111 34677 99
Q ss_pred HHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccc
Q 006709 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (634)
Q Consensus 402 ~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D 446 (634)
+||+||..|.+.|++ ++|+++..++. |.+++.++..||.|.+.
T Consensus 216 ~Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 216 TKIQAAKIAMSHGIE-TFIGNGFTADI-FNQLLKGQNPGTYFTPE 258 (368)
T ss_pred HHHHHHHHHHHcCCc-EEEEcCCCchH-HHHHhcCCCCceEEecC
Confidence 999999999999998 89999999886 66788888899999754
No 31
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.96 E-value=4.3e-28 Score=253.05 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=171.7
Q ss_pred CCeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEE-EEeCchHHHHHHHHHcCC-ccc----ccCCccCCC
Q 006709 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFV-LVPGTHVQIDKLLSERGH-EAK----YLGRYRITD 164 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvV-LVHGGG~~I~~~l~~lg~-~~~----~~~G~RvT~ 164 (634)
.+++|||+|||+|++++ +..++++|+.|++.|++|| |+||++.+.+..+...+. ... ...+.++..
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~ 87 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM 87 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCC
Confidence 48999999999998753 6889999999999999999 666666666666654332 000 011111111
Q ss_pred HHHHH--HHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHH
Q 006709 165 SESLA--AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (634)
Q Consensus 165 ~~~l~--~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~ 242 (634)
+..+. .+.+++||.. |++.|++ .|.+||++ +.++.....+|-..+ ......+
T Consensus 88 ~~~~~~~qa~aa~gq~~--L~~~y~~-----~f~~~~~~----~~q~llt~~d~~~~~---------------~~~~~~~ 141 (284)
T cd04256 88 PQMELDGRACAAVGQSG--LMALYEA-----MFTQYGIT----VAQVLVTKPDFYDEQ---------------TRRNLNG 141 (284)
T ss_pred cchhHHHHHHHHcccHH--HHHHHHH-----HHHHcCCc----HHHeeeeccccccHH---------------HHHHHHH
Confidence 22111 2346677655 6666643 79999987 333333333332211 1224568
Q ss_pred HHHHHHcCCcEEEEcCCccCC-------CCce--eeechHHHHHHHHHHcCCCEEEEeecccccC------CCCcccccc
Q 006709 243 RMRERLDGGCLVILSNLGYSS-------SGEV--LNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFL 307 (634)
Q Consensus 243 ~I~~LLd~G~IPVv~~v~~~~-------~Gei--~nid~D~lAa~LA~aL~AdkLI~LTDVdgld------~~gklI~~l 307 (634)
+|+.||+.|+|||+++++... +++. .++|+|.+|+++|.+++||+|+|+|||||++ +++++|+++
T Consensus 142 ~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i 221 (284)
T cd04256 142 TLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTF 221 (284)
T ss_pred HHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccc
Confidence 999999999999999754322 1233 4599999999999999999999999999973 358999999
Q ss_pred CHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccc
Q 006709 308 TLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 387 (634)
Q Consensus 308 s~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~ 387 (634)
+..+...+... . .+ .+.
T Consensus 222 ~~~~~~~~~~~-~-------------------------------------------------~s-------------~~g 238 (284)
T cd04256 222 YPGDQQSITFG-T-------------------------------------------------KS-------------RVG 238 (284)
T ss_pred cHhHHHHhhcc-c-------------------------------------------------cc-------------Ccc
Confidence 97665433210 0 01 134
Q ss_pred cCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 388 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 388 ~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
+|| |.+||+||..|.+.|++ ++|++|..++. +.+++.++..||.|
T Consensus 239 tGG---------M~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~-i~~~l~G~~~GT~~ 283 (284)
T cd04256 239 TGG---------MEAKVKAALWALQGGTS-VVITNGMAGDV-ITKILEGKKVGTFF 283 (284)
T ss_pred cCC---------cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHHcCCCCCEEe
Confidence 677 99999999999999997 89999999987 67888888899987
No 32
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=1.6e-27 Score=257.62 Aligned_cols=238 Identities=21% Similarity=0.266 Sum_probs=178.7
Q ss_pred CCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~ 171 (634)
++++|||+||++|+++. +.+++++|+.+++.|+++||||||+ +...+..+++..+. ......+ +
T Consensus 8 ~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i~~g~~~l~l~~~~------~~~~~~q-a 78 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--VAAGRERLGLPERP------KTLAEKQ-A 78 (372)
T ss_pred CCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--hhhhHhhcCCCCCC------CchHHHH-H
Confidence 57999999999998742 7899999999999999999999984 55666777776431 1222233 2
Q ss_pred HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEec-HHHHHHHHcC
Q 006709 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG 250 (634)
Q Consensus 172 ~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd-~~~I~~LLd~ 250 (634)
++++||.. ++..|. ..|+++|++ +.++...+.+|.... +.+| .+.|+.||+.
T Consensus 79 ~aavGq~~--L~~~~~-----~~l~~~gi~----~~qil~t~~d~~~~~----------------~~ln~~~~i~~Ll~~ 131 (372)
T PRK05429 79 AAAVGQSR--LMQAYE-----ELFARYGIT----VAQILLTRDDLEDRE----------------RYLNARNTLRTLLEL 131 (372)
T ss_pred HHHHhHHH--HHHHHH-----HHHHHCCCC----EEEEEeehhHhhhhh----------------HhhhHHHHHHHHHHC
Confidence 34455533 334332 368999998 566555554443111 2334 4899999999
Q ss_pred CcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH--HHHHHHHHhhch
Q 006709 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVK 321 (634)
Q Consensus 251 G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~--~e~~~li~~~~~ 321 (634)
|+|||+++++.....++.++|+|.+|++||.+|+||+|+|+|||||++ |++++|++++. +|++.++...
T Consensus 132 g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~-- 209 (372)
T PRK05429 132 GVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGA-- 209 (372)
T ss_pred CCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCC--
Confidence 999999986655555677899999999999999999999999999972 35899999986 4565553210
Q ss_pred hhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCH
Q 006709 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (634)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~ 401 (634)
++ ++++|| |.
T Consensus 210 ------------------------------------------------~~-------------~~gtGG---------M~ 219 (372)
T PRK05429 210 ------------------------------------------------GS-------------GLGTGG---------MA 219 (372)
T ss_pred ------------------------------------------------CC-------------CcCcCC---------cH
Confidence 01 245677 99
Q ss_pred HHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccc
Q 006709 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (634)
Q Consensus 402 ~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D 446 (634)
+||+||..|.+.|++ ++|+||..++. +.+++.+++.||.|.+.
T Consensus 220 ~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 220 TKLEAARIATRAGIP-VVIASGREPDV-LLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred HHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHhcCCCCCEEEeeC
Confidence 999999999999997 99999999885 77888888899999754
No 33
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.96 E-value=1.4e-27 Score=246.42 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=167.6
Q ss_pred CCeEEEEECCccCCCCC------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~ 172 (634)
.+++|||+|||+|++++ +..++++|+.|++ ++++||||||+ +......+++... ... ...++
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~-~~~vilVssGa--va~g~~~~~~~~~--------~~~-~~qa~ 75 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQT-KYEVILVTSGA--VAAGYTKKEMDKS--------YVP-NKQAL 75 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhc-CCeEEEEecCh--HhcChhhcCCCcc--------ccH-HHHHH
Confidence 58899999999998754 6889999999986 79999999886 3333445554321 111 22345
Q ss_pred HHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEE-ecHHHHHHHHcCC
Q 006709 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK-VDVTRMRERLDGG 251 (634)
Q Consensus 173 ~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~-vd~~~I~~LLd~G 251 (634)
+++||.. |+..|. +.|.++|+. +.++.....++-. +.+. ...++|++||+.|
T Consensus 76 aaiGq~~--L~~~y~-----~~f~~~~~~----~aqiLlt~~d~~~----------------~~~~~n~~~~l~~lL~~g 128 (264)
T PTZ00489 76 ASMGQPL--LMHMYY-----TELQKHGIL----CAQMLLAAYDLDS----------------RKRTINAHNTIEVLISHK 128 (264)
T ss_pred HHhCHHH--HHHHHH-----HHHHhCCCe----EEEeeeecccccc----------------chhhHHHHHHHHHHHHCC
Confidence 6777744 444432 368999987 4444333222211 1122 2368999999999
Q ss_pred cEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC---C----CCcc---ccccCHHHHHHHHHhhch
Q 006709 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHL---IRFLTLQEADSLIRQRVK 321 (634)
Q Consensus 252 ~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld---~----~gkl---I~~ls~~e~~~li~~~~~ 321 (634)
+|||+++++..+..|+.|+|+|.+|+.||..++||+|||+|||||++ | ++++ |++++.+++.... ..
T Consensus 129 ~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~--~~- 205 (264)
T PTZ00489 129 VIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEA--TP- 205 (264)
T ss_pred CEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhc--Cc-
Confidence 99999998877777899999999999999999999999999999973 2 3555 6677765442210 00
Q ss_pred hhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCH
Q 006709 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (634)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~ 401 (634)
. ..+++|| |.
T Consensus 206 ------------------------------------------------~-------------~~~~tGG---------M~ 215 (264)
T PTZ00489 206 ------------------------------------------------N-------------NRFATGG---------IV 215 (264)
T ss_pred ------------------------------------------------C-------------CCcccCC---------hH
Confidence 0 0246778 99
Q ss_pred HHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhc--CCcccccc
Q 006709 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRD--GMGTMVAS 445 (634)
Q Consensus 402 ~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~--g~GT~I~~ 445 (634)
+||+||..|.+.|++ ++|++|..++. +..++.++ ..||.|.+
T Consensus 216 ~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-i~~~l~g~~~~~GT~~~~ 259 (264)
T PTZ00489 216 TKLQAAQFLLERGGK-MYLSSGFHLEK-ARDFLIGGSHEIGTLFYP 259 (264)
T ss_pred HHHHHHHHHHHCCCC-EEEEeCCCchH-HHHHHcCCCCCCceEEee
Confidence 999999999999997 89999999986 56666554 37999965
No 34
>PRK12354 carbamate kinase; Reviewed
Probab=99.96 E-value=7.5e-28 Score=251.44 Aligned_cols=250 Identities=21% Similarity=0.193 Sum_probs=183.3
Q ss_pred eEEEEECCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHH
Q 006709 101 TFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-----------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~ 169 (634)
++|||||||+|.++. ++..++.|+.|.+ |+++||+||+|||++.++.+..... ..++.+|+
T Consensus 2 ~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~-------~~~~~pl~ 73 (307)
T PRK12354 2 RIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYK-------DVTPYPLD 73 (307)
T ss_pred eEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhc-------CCCCCCcc
Confidence 699999999998743 3577889999887 9999999999999886654432211 12455666
Q ss_pred HH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceee-eeecccc----------------cCcccc
Q 006709 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLA-AKRKGVV----------------DGVDYG 231 (634)
Q Consensus 170 ~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~-ak~~g~~----------------~g~d~g 231 (634)
.+ .+.+|.+.+.++++|.+ .|.+..+..-+.++-++..|..|-. .|+.|++ -..|-.
T Consensus 74 ~~~a~sqg~iGy~l~q~l~~-----~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~ 148 (307)
T PRK12354 74 VLGAETEGMIGYMLEQELGN-----LLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGD 148 (307)
T ss_pred hhcccccchHHHHHHHHHHH-----HhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCC
Confidence 65 56889999999998764 4444333333335667777777766 3455432 112323
Q ss_pred ccceEE-------EecHHHHHHHHcCCcEEEEc-----CCccCCCCcee----eechHHHHHHHHHHcCCCEEEEeeccc
Q 006709 232 ATGEVK-------KVDVTRMRERLDGGCLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLICIIDGP 295 (634)
Q Consensus 232 ~~G~v~-------~vd~~~I~~LLd~G~IPVv~-----~v~~~~~Gei~----nid~D~lAa~LA~aL~AdkLI~LTDVd 295 (634)
+.++|. .++.+.|+.||++|+|||.+ |+..+.+++.. ++|+|.+|++||.+|+||+|+||||||
T Consensus 149 g~rrVv~SP~P~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVd 228 (307)
T PRK12354 149 YFRRVVPSPRPKRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVD 228 (307)
T ss_pred ceEEEecCCCCcceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCc
Confidence 445554 79999999999999998886 66655545443 479999999999999999999999999
Q ss_pred ccC-----CCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCC
Q 006709 296 ILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNG 370 (634)
Q Consensus 296 gld-----~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (634)
|+. +++++|++++.+|++++ .
T Consensus 229 GVy~~~~~p~~k~i~~it~~e~~~~----~-------------------------------------------------- 254 (307)
T PRK12354 229 AVYLDWGKPTQRAIAQATPDELREL----G-------------------------------------------------- 254 (307)
T ss_pred ceecCCCCCCCeECCCCCHHHHHhh----C--------------------------------------------------
Confidence 873 45789999998876654 0
Q ss_pred cccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccc
Q 006709 371 VGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (634)
Q Consensus 371 ~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D 446 (634)
|++|| |.+|++||..+++.|..+++|.+ ... +.+++.++ .||.|.++
T Consensus 255 ---------------f~~Gg---------M~pKV~AA~~~~~~gg~~viI~~---~~~-l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 255 ---------------FAAGS---------MGPKVEAACEFVRATGKIAGIGS---LED-IQAILAGE-AGTRISPE 301 (307)
T ss_pred ---------------CCcCC---------hHHHHHHHHHHHHhCCCEEEECC---HHH-HHHHHCCC-CceEEecC
Confidence 34566 99999999999988887788854 233 56777654 89999764
No 35
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.95 E-value=3.9e-27 Score=238.95 Aligned_cols=257 Identities=19% Similarity=0.207 Sum_probs=200.8
Q ss_pred CeEEEEECCccCCCCC-----------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 006709 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-----------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l 168 (634)
+++||.||||+|.... ++..++.|+.|.+.|+++||+||+|||++.++.+....... .-++...|
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~----~~~p~~PL 76 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSE----KGVPAYPL 76 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccc----cCCCCccH
Confidence 5799999999996542 67889999999999999999999999999887765442211 12456677
Q ss_pred HHH-HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcce----eEEeeccCCceee-eeeccccc----------------
Q 006709 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVVD---------------- 226 (634)
Q Consensus 169 ~~~-~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~----av~l~~~dg~~l~-ak~~g~~~---------------- 226 (634)
+.+ .+++|+|.++|.++|.+ .|.++|++.++. .+-++..|+.|.. .||.|++-
T Consensus 77 d~~~AmsQG~IGy~l~qal~n-----~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~ 151 (312)
T COG0549 77 DVLVAMSQGMIGYMLQQALRN-----ELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVF 151 (312)
T ss_pred HHHhHhhhhHHHHHHHHHHHH-----HHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEE
Confidence 876 67999999999999975 688889765444 4578888888988 46777630
Q ss_pred --Cccccccce------EEEecHHHHHHHHcCCcEEEEc-----CCccCCC---CceeeechHHHHHHHHHHcCCCEEEE
Q 006709 227 --GVDYGATGE------VKKVDVTRMRERLDGGCLVILS-----NLGYSSS---GEVLNCNTYEVATACALAIEADKLIC 290 (634)
Q Consensus 227 --g~d~g~~G~------v~~vd~~~I~~LLd~G~IPVv~-----~v~~~~~---Gei~nid~D~lAa~LA~aL~AdkLI~ 290 (634)
..+.||... ++.++.+.|+.|+++|.++|.+ |+..+.. |.-.+||.|..++.||..++||.||+
T Consensus 152 keD~~rG~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liI 231 (312)
T COG0549 152 KEDAGRGYRRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLII 231 (312)
T ss_pred EecCCCCeeEecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEE
Confidence 112333332 3688999999999999999987 3333333 55679999999999999999999999
Q ss_pred eeccccc-----CCCCccccccCHHHHHHHHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhc
Q 006709 291 IIDGPIL-----DESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (634)
Q Consensus 291 LTDVdgl-----d~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
|||||.+ .|+.+.+++++.+|++++++++
T Consensus 232 LTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg---------------------------------------------- 265 (312)
T COG0549 232 LTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEG---------------------------------------------- 265 (312)
T ss_pred EeccchheecCCCccchhhcccCHHHHHHHHhcC----------------------------------------------
Confidence 9999976 2788999999999999998653
Q ss_pred cccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 366 ~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
.|+.|+ |.||++||..+++++-+++.|.+ .+. +.+++ ....||.|.
T Consensus 266 -------------------~Fa~GS---------M~PKVeAai~Fv~~~gk~A~Its--Le~--~~~~l-~g~~GT~I~ 311 (312)
T COG0549 266 -------------------QFAAGS---------MGPKVEAAISFVENTGKPAIITS--LEN--AEAAL-EGKAGTVIV 311 (312)
T ss_pred -------------------CCCCCC---------ccHHHHHHHHHHHcCCCceEECc--HHH--HHHHh-ccCCCcEec
Confidence 266677 99999999999999988887775 222 34544 467899875
No 36
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.95 E-value=2.5e-27 Score=243.39 Aligned_cols=235 Identities=20% Similarity=0.250 Sum_probs=171.1
Q ss_pred eEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHH
Q 006709 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME 173 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~ 173 (634)
++|||+||+++++++ +.+++++|+.++..|+++||||||+... ....+++.... ......+ +.+
T Consensus 1 ~iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~--g~~~~~~~~~~------~~~~~~~-~~~ 71 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAA--GRQRLGLEKRP------KTLPEKQ-ALA 71 (251)
T ss_pred CEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhh--ChhhhccCcCC------CchhHHH-HHH
Confidence 589999999999875 7889999999999999999999864322 23445543221 1222333 334
Q ss_pred HHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcE
Q 006709 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 253 (634)
Q Consensus 174 a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~I 253 (634)
+.|+.. ++..+. ..|+++|++ +.++...+.+|..++. .....+.|+.||+.|+|
T Consensus 72 ~~Gq~~--l~~~~~-----~~l~~~Gi~----~~q~l~t~~~~~~~~~---------------~~~~~~~i~~ll~~g~i 125 (251)
T cd04242 72 AVGQSL--LMALYE-----QLFAQYGIK----VAQILLTRDDFEDRKR---------------YLNARNTLETLLELGVI 125 (251)
T ss_pred HHhHHH--HHHHHH-----HHHHHcCCe----EEEEEEehhHhcchHH---------------HHHHHHHHHHHHHCCCE
Confidence 556543 443332 268999998 5555555554433211 01125889999999999
Q ss_pred EEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccC--HHHHHHHHHhhchhhh
Q 006709 254 VILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT--LQEADSLIRQRVKQSE 324 (634)
Q Consensus 254 PVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls--~~e~~~li~~~~~~~~ 324 (634)
||+++++.-.++++.++|+|.+|++||.+|+||+|+|+|||||++ +++++|++++ .+|+..+....
T Consensus 126 PVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~----- 200 (251)
T cd04242 126 PIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGS----- 200 (251)
T ss_pred EEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhccc-----
Confidence 999986544445567889999999999999999999999999973 3589999999 77776653110
Q ss_pred hHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHH
Q 006709 325 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 404 (634)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl 404 (634)
. ..|++|| |.+|+
T Consensus 201 ---------------------------------------------~-------------~~~~tgg---------m~~Kl 213 (251)
T cd04242 201 ---------------------------------------------G-------------SSVGTGG---------MRTKL 213 (251)
T ss_pred ---------------------------------------------C-------------cCcccCC---------cHHHH
Confidence 0 0245677 99999
Q ss_pred HHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 405 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 405 ~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
++|..+.+.|++ ++|+||..++. +.+++.+++.||.|.
T Consensus 214 ~a~~~a~~~gi~-v~I~~g~~~~~-i~~~l~g~~~GT~i~ 251 (251)
T cd04242 214 KAARIATEAGIP-VVIANGRKPDV-LLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHHHHCCCc-EEEEcCCCCCH-HHHHHcCCCCCeEeC
Confidence 999999999997 99999999986 677888888999873
No 37
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=8e-27 Score=241.59 Aligned_cols=237 Identities=20% Similarity=0.214 Sum_probs=167.9
Q ss_pred CCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEE-eCchHHHHHHHHHcCCcccccCCccCCCHHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLV-PGTHVQIDKLLSERGHEAKYLGRYRITDSESLAA 170 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLV-HGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~ 170 (634)
++++|||+||++|++++ +.+++++|+.++..|+++||| ||++.+.+..+ ++.. +..+...+++
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l---~~~~------~~~~~~~~~a 79 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKL---KLDK------RPTSLAEKQA 79 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceee---cccc------CCCCHHHHHH
Confidence 57999999999998542 789999999999999999987 66666655443 2221 1123344444
Q ss_pred HHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcC
Q 006709 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (634)
Q Consensus 171 ~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~ 250 (634)
+ ++.||.. ++..|. ..|+++|++ +.++...+.+|-. .+......++|+.||+.
T Consensus 80 ~-aa~Gq~~--l~~~~~-----~~~~~~g~~----~~q~llT~~~~~~---------------~~~~~~~~~~l~~ll~~ 132 (266)
T PRK12314 80 L-AAVGQPE--LMSLYS-----KFFAEYGIV----VAQILLTRDDFDS---------------PKSRANVKNTFESLLEL 132 (266)
T ss_pred H-HHHhHHH--HHHHHH-----HHHHHcCCe----EEEEEEecccccc---------------hHHHHHHHHHHHHHHHC
Confidence 3 5667643 444443 368999987 3333333333321 11223346899999999
Q ss_pred CcEEEEcCCccCCCCc--eeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCH--HHHHHHHHhh
Q 006709 251 GCLVILSNLGYSSSGE--VLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQR 319 (634)
Q Consensus 251 G~IPVv~~v~~~~~Ge--i~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~--~e~~~li~~~ 319 (634)
|+|||+++++.-...+ ..++|+|.+|++||.+|+||+|+|+|||||++ |++++|++|+. .+..++...
T Consensus 133 g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~- 211 (266)
T PRK12314 133 GILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGG- 211 (266)
T ss_pred CCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhcc-
Confidence 9999999754332222 34779999999999999999999999999973 35888888874 222222100
Q ss_pred chhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccC
Q 006709 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (634)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~ 399 (634)
.++ .+++||
T Consensus 212 -------------------------------------------------~~~-------------~~~tGG--------- 220 (266)
T PRK12314 212 -------------------------------------------------AGS-------------KFGTGG--------- 220 (266)
T ss_pred -------------------------------------------------CCC-------------CcccCc---------
Confidence 001 145677
Q ss_pred CHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccc
Q 006709 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (634)
Q Consensus 400 m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~ 445 (634)
|.+|++||..|.+.|++ ++|++|..++. +.+++.++..||.|.+
T Consensus 221 M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~-i~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 221 MVTKLKAAKFLMEAGIK-MVLANGFNPSD-ILDFLEGESIGTLFAP 264 (266)
T ss_pred hHHHHHHHHHHHHCCCe-EEEEcCCCchH-HHHHHcCCCCceEEcc
Confidence 99999999999999997 99999999987 6788888889999965
No 38
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.94 E-value=2.1e-26 Score=248.08 Aligned_cols=237 Identities=17% Similarity=0.227 Sum_probs=171.0
Q ss_pred CeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 006709 100 GTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~ 172 (634)
+++|||+||++|++++ +..++++|+.+++.|+++|||||||. ...+..++++.+ ..+....+ +.
T Consensus 1 ~riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~--~~g~~~lg~~~~------~~~l~~~q-a~ 71 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAI--AAGFEALGLPER------PKTLAEKQ-AL 71 (363)
T ss_pred CeEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHH--hcCccccCCCCC------ccchHHHH-HH
Confidence 4799999999999864 68899999999999999999999974 334555666532 12222333 34
Q ss_pred HHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecH-HHHHHHHcCC
Q 006709 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGG 251 (634)
Q Consensus 173 ~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~-~~I~~LLd~G 251 (634)
++.|+.. ++..+. ..|.++|++ +.++...+.+|... .+..|. ++|+.||+.|
T Consensus 72 aa~Gq~~--l~~~~~-----~~l~~~Gi~----~aqillt~~d~~~~----------------~~~lna~~~i~~Ll~~g 124 (363)
T TIGR01027 72 AAVGQVR--LMQLYE-----QLFSQYGIK----VAQILLTRADFSDR----------------ERYLNARNTLEALLELG 124 (363)
T ss_pred HHhChHH--HHHHHH-----HHHHHcCCe----EEEEEEeccchhhH----------------HHHHHHHHHHHHHHhCC
Confidence 5666643 344332 268999997 44543333332211 122344 8999999999
Q ss_pred cEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHH-HHHHHHhhchhh
Q 006709 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQE-ADSLIRQRVKQS 323 (634)
Q Consensus 252 ~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e-~~~li~~~~~~~ 323 (634)
.|||+++++.....++.++|+|.+|+.+|.+|+||+|+|+|||||++ |++++|++++..+ ....+..+.
T Consensus 125 ~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~--- 201 (363)
T TIGR01027 125 VVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDS--- 201 (363)
T ss_pred CEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCC---
Confidence 99999976544444566789999999999999999999999999972 3579999997531 211121100
Q ss_pred hhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHH
Q 006709 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (634)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~K 403 (634)
++ +|++|| |.+|
T Consensus 202 ----------------------------------------------~~-------------~~gtGG---------M~~K 213 (363)
T TIGR01027 202 ----------------------------------------------GS-------------SVGTGG---------MRTK 213 (363)
T ss_pred ----------------------------------------------Cc-------------CcCcCC---------chHH
Confidence 01 256777 9999
Q ss_pred HHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccc
Q 006709 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (634)
Q Consensus 404 l~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~ 445 (634)
|+||..|.+.|++ ++|+++..++. |.+++.++..||.|.+
T Consensus 214 l~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~ 253 (363)
T TIGR01027 214 LQAADLATRAGVP-VIIASGSKPEK-IADALEGAPVGTLFHA 253 (363)
T ss_pred HHHHHHHHHCCCe-EEEEeCCCccH-HHHHhcCCCCcEEEee
Confidence 9999999999997 99999998876 6677888889999976
No 39
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.94 E-value=4.1e-27 Score=232.24 Aligned_cols=245 Identities=20% Similarity=0.208 Sum_probs=178.1
Q ss_pred CCeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCH---HH
Q 006709 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS---ES 167 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~---~~ 167 (634)
-++||||+|++++++++ +..++++++.|++.|++++||++|+.+. +++++..+.....-+|-+-. +.
T Consensus 9 a~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~--G~qrLr~~~~~s~s~r~~l~~~~~l 86 (285)
T KOG1154|consen 9 AYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAF--GRQRLRQELLPSSSMRQTLKPQSEL 86 (285)
T ss_pred ceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhh--hHHHhhhhhccchhHHHhhCCccch
Confidence 47999999999999865 6789999999999999999999996554 44555444322111111111 12
Q ss_pred HHH-HHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEec-HHHHH
Q 006709 168 LAA-AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMR 245 (634)
Q Consensus 168 l~~-~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd-~~~I~ 245 (634)
.+. +++++||-+ |++.|. ..|.++|+. ..++.....+|..... +.| .++|.
T Consensus 87 ~e~rA~AAvGQ~~--Lmalye-----~lF~Qy~~~----iAQvLvT~~Di~d~~~----------------r~Nl~~Ti~ 139 (285)
T KOG1154|consen 87 AEKRACAAVGQSG--LMALYE-----TLFTQYGIT----IAQVLVTRNDILDEQQ----------------RKNLQNTIS 139 (285)
T ss_pred hhHHHHHHhCcch--HHHHHH-----HHHHHhccc----hheeeecCcchhhHHH----------------HHHHHHHHH
Confidence 223 457778766 566554 279999987 4566556655554332 123 48999
Q ss_pred HHHcCCcEEEEcCCccCCCCceeeec---hHHHHHHHHHHcCCCEEEEeecccccC---CCC---ccccccCHHHHHHHH
Q 006709 246 ERLDGGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILD---ESG---HLIRFLTLQEADSLI 316 (634)
Q Consensus 246 ~LLd~G~IPVv~~v~~~~~Gei~nid---~D~lAa~LA~aL~AdkLI~LTDVdgld---~~g---klI~~ls~~e~~~li 316 (634)
+||..|+|||+|.++.-+.-++.|.| ||.+|+.+|..++||.||+||||+|++ |+. ++|+..+..
T Consensus 140 eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~------ 213 (285)
T KOG1154|consen 140 ELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPG------ 213 (285)
T ss_pred HHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccC------
Confidence 99999999999998766666777777 999999999999999999999999985 233 333333221
Q ss_pred HhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCccccccc
Q 006709 317 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 396 (634)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~ 396 (634)
|. ...-+|+.+|.+|+ ||
T Consensus 214 ---------------------------~~----------------~v~~tfG~~SkvGt-------------GG------ 231 (285)
T KOG1154|consen 214 ---------------------------DP----------------QVSTTFGSKSKVGT-------------GG------ 231 (285)
T ss_pred ---------------------------CC----------------CCccccCccCccCc-------------Cc------
Confidence 00 01235666666654 56
Q ss_pred ccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccc
Q 006709 397 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (634)
Q Consensus 397 ~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~ 445 (634)
|.+||.||.+|..+||. |.|.+|..+.. +..++.+...||.|..
T Consensus 232 ---M~tKv~AA~~A~~~Gv~-viI~~g~~p~~-I~~iv~g~kvgt~f~~ 275 (285)
T KOG1154|consen 232 ---METKVKAAVNALNAGVS-VIITNGDAPEN-ITDIVEGKKVGTFFEQ 275 (285)
T ss_pred ---chhhHHHHHHHhcCCce-EEEeCCCChHH-HHHHHhhhhhhhhhhh
Confidence 99999999999999997 89999999987 7788888889999864
No 40
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.94 E-value=3.1e-25 Score=226.18 Aligned_cols=189 Identities=18% Similarity=0.220 Sum_probs=152.5
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCc-hHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHH
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 178 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGG-G~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~i 178 (634)
.+|||+||+++.+++ +++++++|+.+++.|.++|||||| |..++++++...... +.++...++++......+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------~~~~~~~~~~i~a~Ge~~ 74 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------PRPPARELDVLLSTGEQV 74 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------cCCCHHHHHHHHHHHHHH
Confidence 379999999998865 899999999999999999999997 666776665421111 346777888764333356
Q ss_pred HHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcC
Q 006709 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (634)
Q Consensus 179 n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~ 258 (634)
+..+... .|+++|++ ++++++.+..+++..+ ++ .|++..++.+.|+.+++.|.|||+++
T Consensus 75 ~~~l~~~--------~l~~~g~~----a~~l~~~~~~l~~~~~--------~~-~~~i~~~~~~~l~~ll~~~~ipVi~G 133 (239)
T cd04261 75 SIALLAM--------ALNRLGIK----AISLTGWQAGILTDGH--------HG-KARIIDIDPDRIRELLEEGDVVIVAG 133 (239)
T ss_pred HHHHHHH--------HHHhCCCC----eEEechhhCCEEecCC--------CC-cceechhhHHHHHHHHHcCCeEEEcC
Confidence 6665443 47899998 8899998877776542 22 57788888999999999999999998
Q ss_pred C-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC---C----CCccccccCHHHHHHHH
Q 006709 259 L-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLI 316 (634)
Q Consensus 259 v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld---~----~gklI~~ls~~e~~~li 316 (634)
. +.+.+|+++++ |+|.+|+.+|.+|+||+|+++|||||++ | ++++|++++.+|++++.
T Consensus 134 ~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~ 202 (239)
T cd04261 134 FQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMA 202 (239)
T ss_pred ccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHH
Confidence 7 67788999999 9999999999999999999999999973 2 68999999998888775
No 41
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.94 E-value=3.3e-25 Score=225.90 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=153.6
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeC-chHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH-
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPG-THVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG- 177 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHG-GG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~- 177 (634)
.+|||+||+++.+++ +++++++|+.+++.|.++||||| +|+.++.+++..+....+ .+.+.++++ .+.|+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~------~~~~~~~~i-~~~Ge~ 73 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPR------PSPRELDML-LSTGEQ 73 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccC------CCHHHHHHH-HHHhHH
Confidence 379999999998865 89999999999999999999998 578888888877665432 256677775 34454
Q ss_pred HHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEc
Q 006709 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (634)
Q Consensus 178 in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~ 257 (634)
++..+... .|+++|++ ++++++.+..+++..+ ++ .|++..++.+.|++++++|.|||++
T Consensus 74 ~~~~~~~~--------~l~~~g~~----a~~l~~~~~~l~~~~~--------~~-~~~~~~~~~~~l~~ll~~g~ipVi~ 132 (239)
T cd04246 74 ISAALLAM--------ALNRLGIK----AISLTGWQAGILTDDH--------HG-NARIIDIDPKRILEALEEGDVVVVA 132 (239)
T ss_pred HHHHHHHH--------HHHhCCCC----eEEeccccCCEEecCC--------CC-ceeechhhHHHHHHHHhcCCEEEEc
Confidence 45554333 47899998 7899988877776543 22 4677888999999999999999999
Q ss_pred CC-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHH
Q 006709 258 NL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 316 (634)
Q Consensus 258 ~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li 316 (634)
+. +.+.+|+++++ |+|.+|+.+|.+|+||+|+|+|||||++ +++++|++++.+|+++++
T Consensus 133 g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~ 202 (239)
T cd04246 133 GFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMA 202 (239)
T ss_pred CccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHH
Confidence 86 66778899988 8999999999999999999999999973 368999999999888775
No 42
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.93 E-value=6.9e-25 Score=224.42 Aligned_cols=190 Identities=18% Similarity=0.229 Sum_probs=156.7
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEe-----CchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHH
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEA 174 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVH-----GGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a 174 (634)
.+|||+||+++++++ +++++++|+.+.+.|.++|||| |||++++..+..++... +.++|. ++++.+ .+
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~----~~~~t~-~~~~~~-~~ 74 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAE----NSDISP-RELDLL-MS 74 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhh----cCCCCH-HHHHHH-HH
Confidence 379999999999877 8999999999999999888777 78888888766654332 456655 457766 56
Q ss_pred HhHHHHH--HHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCc
Q 006709 175 AGGIRMM--IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (634)
Q Consensus 175 ~G~in~~--Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~ 252 (634)
.|+++.. +++ .|+++|++ ++++++.+..+++... ++ .|++..++.+.|+.+|+.|.
T Consensus 75 ~Ge~~~~~~~~~---------~l~~~Gi~----a~~l~~~~~~lit~~~--------~~-~~~v~~~~~~~l~~ll~~g~ 132 (244)
T cd04260 75 CGEIISAVVLTS---------TLRAQGLK----AVALTGAQAGILTDDN--------YS-NAKIIKVNPKKILSALKEGD 132 (244)
T ss_pred HhHHHHHHHHHH---------HHHhCCCC----eEEechHHcCEEecCC--------CC-ceeeeccCHHHHHHHHhCCC
Confidence 7887753 444 47899998 8999999988877553 22 46778889999999999999
Q ss_pred EEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHh
Q 006709 253 LVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 253 IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~ 318 (634)
|||+++. +.+.+|+++++ ++|.+|+.||.+|+||+|+|+|||||++ +++++|++|+.+|+++++..
T Consensus 133 VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~ 209 (244)
T cd04260 133 VVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQ 209 (244)
T ss_pred EEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHc
Confidence 9999996 77888999999 6999999999999999999999999973 36899999999999888743
No 43
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=216.08 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=171.7
Q ss_pred EEEEECCccCCCCC---------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 006709 102 FVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (634)
Q Consensus 102 iVIKLGGsvL~~~~---------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~ 172 (634)
+|+|||||+||+++ +++++.+|+. ..-.++|||||||+|.|..+++++++ ...+ ..++...-.+.
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~-~~~~---~~s~~G~~~~~ 76 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLE-GLKN---YLSPLGFSLTH 76 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHhCcc-cccc---ccCccchHHHH
Confidence 89999999999976 4556666554 33347899999999999999999993 1111 11222222334
Q ss_pred HHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCc
Q 006709 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (634)
Q Consensus 173 ~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~ 252 (634)
.++-++|..++++ |.++|+. ++.+.+.+. .+ +.|++..-..+.++.+|+.|+
T Consensus 77 ~am~~L~~~V~~~---------l~~~Gv~----av~~~P~s~--~~-------------~~gr~~~~~l~~i~~~l~~gf 128 (252)
T COG1608 77 LAMLELNSIVVDA---------LLDAGVR----AVSVVPISF--ST-------------FNGRILYTYLEAIKDALEKGF 128 (252)
T ss_pred HHHHHHHHHHHHH---------HHhcCCc----cccccCcce--ee-------------cCCceeechHHHHHHHHHcCC
Confidence 5667788888886 5788887 443333331 11 235666666899999999999
Q ss_pred EEEEcCCc-cCCCCceeeechHHHHHHHHHHcCCCEEEEeeccccc-CCCCccccccC-HHHHHHHHHhhchhhhhHHHH
Q 006709 253 LVILSNLG-YSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLT-LQEADSLIRQRVKQSEIAANY 329 (634)
Q Consensus 253 IPVv~~v~-~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgl-d~~gklI~~ls-~~e~~~li~~~~~~~~~~~~~ 329 (634)
|||+.+.. .+++....++++|+++.+||+.|+||+++|+|||||+ +.+++.++.+. .++++....-+
T Consensus 129 vPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~---------- 198 (252)
T COG1608 129 VPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALG---------- 198 (252)
T ss_pred EeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhc----------
Confidence 99999754 5555578899999999999999999999999999997 44444444443 34444332110
Q ss_pred HHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHH
Q 006709 330 VKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAF 409 (634)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~ 409 (634)
+ ++ ...+||| |..||+++..
T Consensus 199 ----------------------------------------g----s~-------~~DVTGG---------i~~Kl~~~~~ 218 (252)
T COG1608 199 ----------------------------------------G----SG-------GTDVTGG---------IAKKLEALLE 218 (252)
T ss_pred ----------------------------------------C----cC-------cccchhh---------HHHHHHHHHH
Confidence 0 00 0247889 9999999999
Q ss_pred HHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 410 VCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 410 a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
..+.|.. |+|+||..++. |..++.++.+||.+.
T Consensus 219 ~~~~~~~-vyi~ng~~~~n-i~~~l~G~~vGT~I~ 251 (252)
T COG1608 219 IARYGKE-VYIFNGNKPEN-IYRALRGENVGTRID 251 (252)
T ss_pred HHhcCce-EEEECCCCHHH-HHHHhcCCCCceEec
Confidence 9999987 99999999998 566678899999875
No 44
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.92 E-value=3.2e-24 Score=249.05 Aligned_cols=251 Identities=17% Similarity=0.143 Sum_probs=172.1
Q ss_pred CCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCc-hHHHHHHHHHcCCccc-ccCCccCCCHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAK-YLGRYRITDSESLA 169 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGG-G~~I~~~l~~lg~~~~-~~~G~RvT~~~~l~ 169 (634)
.+++|||+||++|++++ +.+++++|+.|++.|++||||.+| +.+.+..+...+.... +.+-.+.++...++
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~q 86 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELDGK 86 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHHHH
Confidence 58999999999999864 789999999999999999995554 4444444433222110 00001223333333
Q ss_pred HHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHc
Q 006709 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (634)
Q Consensus 170 ~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd 249 (634)
+ .++.||. .|+..|+. .|.++++. ..++...+.+|-..+ ......++|+.||+
T Consensus 87 a-~aa~gq~--~L~~~y~~-----~f~~~~i~----~aQ~Llt~~d~~~~~---------------~~~~~~~~l~~lL~ 139 (715)
T TIGR01092 87 A-CAAVGQS--GLMALYET-----MFTQLDIT----AAQILVTDLDFRDEQ---------------FRRQLNETVHELLR 139 (715)
T ss_pred H-HHHHHHH--HHHHHHHH-----HHHHcCCe----eEEEEechhhcccHH---------------HHHHHHHHHHHHHH
Confidence 3 3455555 45666543 68888886 334333332222111 11234689999999
Q ss_pred CCcEEEEcCCccCCCC-------ceeeechHHHHHHHHHHcCCCEEEEeecccccC------CCCccccccCHHHHHHHH
Q 006709 250 GGCLVILSNLGYSSSG-------EVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADSLI 316 (634)
Q Consensus 250 ~G~IPVv~~v~~~~~G-------ei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld------~~gklI~~ls~~e~~~li 316 (634)
.|+|||+++++...+. +-+|+|+|.+|++||.+|+||+|+|+|||||++ +++++|++++..+.+..+
T Consensus 140 ~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i 219 (715)
T TIGR01092 140 MNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEI 219 (715)
T ss_pred CCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhh
Confidence 9999999975443221 224999999999999999999999999999973 358899998865443222
Q ss_pred HhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCccccccc
Q 006709 317 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 396 (634)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~ 396 (634)
..+ ..+ .+++||
T Consensus 220 ~~~-------------------------------------------------~~~-------------~~~tGG------ 231 (715)
T TIGR01092 220 TFG-------------------------------------------------TKS-------------RLGRGG------ 231 (715)
T ss_pred ccC-------------------------------------------------ccc-------------ccCCCC------
Confidence 110 001 145677
Q ss_pred ccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccccccc
Q 006709 397 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 449 (634)
Q Consensus 397 ~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~Ye 449 (634)
|.+||+||..|.+.|++ ++|++|..++. |.+++.++..||.|.++..+
T Consensus 232 ---M~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 232 ---MTAKVKAAVWAAYGGTP-VIIASGTAPKN-ITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred ---chHHHHHHHHHHHCCCe-EEEeCCCCcch-HHHHhcCCCCceEecccchh
Confidence 99999999999999997 99999998887 67778888899999776544
No 45
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.91 E-value=3.3e-23 Score=240.45 Aligned_cols=249 Identities=17% Similarity=0.147 Sum_probs=175.6
Q ss_pred CCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccc---cCCc-cCCCHHH
Q 006709 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY---LGRY-RITDSES 167 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~---~~G~-RvT~~~~ 167 (634)
++++|||+||+.|++++ +.+++++|+.|++.|+++|||.+|...++ ...+++.... .... +.+....
T Consensus 15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g--~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVG--RQRLRYRRLVNSSFADLQKPQMELD 92 (718)
T ss_pred CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHH--HHHHhhhhhhhcccccCCCCcchHH
Confidence 58999999999999865 78899999999999999999999954443 3444433210 0000 1121222
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHH
Q 006709 168 LAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRER 247 (634)
Q Consensus 168 l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~L 247 (634)
.+ +.+++||.. ++..|+ ..|+++|++ +.++...+.+|-..+ ......++|+.|
T Consensus 93 ~q-a~aa~Gq~~--l~~~~~-----~~f~~~g~~----~~qillT~~~~~~~~---------------~~~~~~~~l~~l 145 (718)
T PLN02418 93 GK-ACAAVGQSE--LMALYD-----TLFSQLDVT----ASQLLVTDSDFRDPD---------------FRKQLSETVESL 145 (718)
T ss_pred HH-HHHHhhHHH--HHHHHH-----HHHHHcCCe----EEEEEecHhHhcchh---------------HhHhHHHHHHHH
Confidence 22 346777765 444443 269999986 455544444333211 123456899999
Q ss_pred HcCCcEEEEcCCccCCCC-------ceeeechHHHHHHHHHHcCCCEEEEeecccccC------CCCccccccCHHHHHH
Q 006709 248 LDGGCLVILSNLGYSSSG-------EVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADS 314 (634)
Q Consensus 248 Ld~G~IPVv~~v~~~~~G-------ei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld------~~gklI~~ls~~e~~~ 314 (634)
|+.|.|||+++++...+. ...|+|+|.+|++||.+++||+|+|+|||||++ +++++|++++..+.+.
T Consensus 146 l~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~ 225 (718)
T PLN02418 146 LDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQD 225 (718)
T ss_pred HHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhh
Confidence 999999999986543321 237889999999999999999999999999973 3478888887654333
Q ss_pred HHHhhchhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCccccc
Q 006709 315 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 394 (634)
Q Consensus 315 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~ 394 (634)
.+..+. .+ .+.+||
T Consensus 226 ~i~~~~-------------------------------------------------~s-------------~~~tGG---- 239 (718)
T PLN02418 226 EITFGE-------------------------------------------------KS-------------RVGRGG---- 239 (718)
T ss_pred hhhccc-------------------------------------------------cc-------------ccCCCC----
Confidence 221110 01 135677
Q ss_pred ccccCCHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccccccc
Q 006709 395 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 449 (634)
Q Consensus 395 ~~~~~m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D~Ye 449 (634)
|.+||+||..|.+.|++ ++|++|..++. +.++++++..||.|.++..+
T Consensus 240 -----M~~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~~~ 287 (718)
T PLN02418 240 -----MTAKVKAAVNAASAGIP-VVITSGYALDN-IRKVLRGERVGTLFHQDAHL 287 (718)
T ss_pred -----cHHHHHHHHHHHHCCCc-EEEeCCCCcch-HHHHhcCCCCceEeccccch
Confidence 99999999999999997 89999999986 66788888899999887553
No 46
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.90 E-value=2.6e-22 Score=203.55 Aligned_cols=215 Identities=19% Similarity=0.174 Sum_probs=153.5
Q ss_pred CeEEEEECCccCCCC-------C-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHH-cCCcccccCCccCCCHHHHHH
Q 006709 100 GTFVVIISGEIVSSP-------Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSE-RGHEAKYLGRYRITDSESLAA 170 (634)
Q Consensus 100 k~iVIKLGGsvL~~~-------~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~-lg~~~~~~~G~RvT~~~~l~~ 170 (634)
+++|||+||++++++ + +++++++|+.+++.|.++|||||||++++..... .++ +...++.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~-----------~~~~~~~ 69 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGM-----------DRATADY 69 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCC-----------ChhhHHH
Confidence 479999999999843 2 7899999999999999999999999887765321 222 1223444
Q ss_pred HHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcC
Q 006709 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (634)
Q Consensus 171 ~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~ 250 (634)
..++..++|..++.. .|+++|++ +.-+.... ++..+. ....+.+.++|++
T Consensus 70 ~~~~~~~l~~~ll~~--------~l~~~Gi~----a~~~~~~~----------------~~~~~~--~~~~~~~~~~l~~ 119 (231)
T PRK00358 70 MGMLATVMNALALQD--------ALERAGVD----TRVQSAIP----------------MPQVAE--PYIRRRAIRHLEK 119 (231)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCC----eEEechhh----------------cccccC--cccHHHHHHHHHC
Confidence 444556777755543 47899987 32111111 111111 1234678899999
Q ss_pred CcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhchhh
Q 006709 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (634)
Q Consensus 251 G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~~~~ 323 (634)
|.|||+++-. +. .+.++|.+|+++|.+|+||+|+|+|||||++ +++++|++++.+|+.++ +.
T Consensus 120 g~vPVv~g~~----~~-~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~--- 188 (231)
T PRK00358 120 GRVVIFAAGT----GN-PFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GL--- 188 (231)
T ss_pred CCEEEEECCC----CC-CCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CC---
Confidence 9999997521 11 2458999999999999999999999999973 36999999987653222 11
Q ss_pred hhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHH
Q 006709 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (634)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~K 403 (634)
...+
T Consensus 189 ----------------------------------------------------------------------------~~~d 192 (231)
T PRK00358 189 ----------------------------------------------------------------------------KVMD 192 (231)
T ss_pred ----------------------------------------------------------------------------cchh
Confidence 2236
Q ss_pred HHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 404 l~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
+.++..|.+.|++ ++|+||..++. |..++.++..||.|.
T Consensus 193 ~~a~~~a~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 193 ATAISLARDNKIP-IIVFNMNKPGN-LKRVVKGEHIGTLVS 231 (231)
T ss_pred HHHHHHHHHcCCc-EEEECCCCchH-HHHHHCCCCCCEEeC
Confidence 7788888899996 89999999987 667778888899873
No 47
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.90 E-value=9.5e-23 Score=206.50 Aligned_cols=176 Identities=20% Similarity=0.222 Sum_probs=141.2
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHH-
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI- 178 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~i- 178 (634)
++|||+||+++.+++ ++.++++|+.+ +.|.++||||||++.++..+..+. .+++.|+.
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~-------------------~~~s~Ge~~ 60 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-------------------LLLSFGERL 60 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH-------------------HHHHHHHHH
Confidence 479999999998876 89999999999 889999999999887766554432 23445544
Q ss_pred HHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcC-CcEEEEc
Q 006709 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG-GCLVILS 257 (634)
Q Consensus 179 n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~-G~IPVv~ 257 (634)
+..++.. .|+++|++ +..+++.+..+... ++++.+++..++.+.|+++++. |.|||++
T Consensus 61 ~~~l~~~--------~l~~~Gi~----a~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~ 119 (227)
T cd04234 61 SARLLAA--------ALRDRGIK----ARSLDARQAGITTD---------DNHGAARIIEISYERLKELLAEIGKVPVVT 119 (227)
T ss_pred HHHHHHH--------HHHHCCCC----eEEeCHHHCCEEcC---------CccchhhHHHHHHHHHHHHHhhCCCEEEec
Confidence 5555554 48899998 77777766544432 3345666777889999999999 9999999
Q ss_pred C-CccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHH
Q 006709 258 N-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 258 ~-v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~ 317 (634)
+ ++.+.+|++.++ ++|.+|+.+|.+|+||+|+|+|||||++ +++++|++++.+|++++..
T Consensus 120 g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~ 190 (227)
T cd04234 120 GFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAY 190 (227)
T ss_pred CceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHh
Confidence 8 567778888877 7999999999999999999999999973 3689999999999888753
No 48
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.90 E-value=3.1e-22 Score=202.91 Aligned_cols=214 Identities=18% Similarity=0.160 Sum_probs=155.6
Q ss_pred eEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHH-HHHHHcCCcccccCCccCCCHHHHHHHH
Q 006709 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQID-KLLSERGHEAKYLGRYRITDSESLAAAM 172 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~-~~l~~lg~~~~~~~G~RvT~~~~l~~~~ 172 (634)
++|||+||+++++++ ++.+++.|+.+.+.|.++|||||||++++ .....+++. +..++...
T Consensus 1 ~iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~-----------~~~~~~~~ 69 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMP-----------RATADYIG 69 (229)
T ss_pred CEEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCC-----------hhhHHHHH
Confidence 589999999998852 78899999999888999999999888643 332333322 11233333
Q ss_pred HHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCc
Q 006709 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (634)
Q Consensus 173 ~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~ 252 (634)
.+...+|..+++. .|.++|++ +..+++.+-.. .....+.+.+..+++.|.
T Consensus 70 ~~~~~l~~~l~~~--------~l~~~Gi~----a~~~~~~~~~~------------------~~~~~~~~~l~~~l~~g~ 119 (229)
T cd04239 70 MLATVMNALALQD--------ALEKLGVK----TRVMSAIPMQG------------------VAEPYIRRRAIRHLEKGR 119 (229)
T ss_pred HHHHHHHHHHHHH--------HHHHcCCC----EEEeCHHHHhh------------------hhccccHHHHHHHHhCCC
Confidence 3344566666654 47889987 55544432110 012346788999999999
Q ss_pred EEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhchhhhh
Q 006709 253 LVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEI 325 (634)
Q Consensus 253 IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~~~~~~ 325 (634)
|||+++.. | ..+.++|.+|+++|.+|+||+|+|+|||||++ +++++|++++.+|+.++..
T Consensus 120 ipVi~g~~----g-~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~-------- 186 (229)
T cd04239 120 IVIFGGGT----G-NPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL-------- 186 (229)
T ss_pred EEEEeCcc----C-CCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc--------
Confidence 99999764 2 23458999999999999999999999999973 3589999999877665421
Q ss_pred HHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHH
Q 006709 326 AANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELA 405 (634)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~ 405 (634)
|..++.
T Consensus 187 --------------------------------------------------------------------------~~~~~~ 192 (229)
T cd04239 187 --------------------------------------------------------------------------KVMDAT 192 (229)
T ss_pred --------------------------------------------------------------------------CCccHH
Confidence 223355
Q ss_pred HHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 406 AAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 406 AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
++..+.+.|++ ++|++|..++. +.+++.++..||.|.
T Consensus 193 a~~~~~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 229 (229)
T cd04239 193 ALTLCRRNKIP-IIVFNGLKPGN-LLRALKGEHVGTLIE 229 (229)
T ss_pred HHHHHHHCCCe-EEEECCCChhH-HHHHHcCCCCCeEeC
Confidence 67778888986 99999999987 677788778899873
No 49
>PRK08210 aspartate kinase I; Reviewed
Probab=99.90 E-value=2.1e-22 Score=220.05 Aligned_cols=193 Identities=16% Similarity=0.180 Sum_probs=156.3
Q ss_pred CCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEe-----CchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVH-----GGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~ 172 (634)
|+++|||+||+++++++ +..++++|+.+.+.|+++|||| ||+|+++..+..+..... +.++...++.+
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~-----~~~~~~~~~~l- 74 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF-----SEISKREQDLL- 74 (403)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----cCCChHHHHHH-
Confidence 47899999999999877 7899999999999999999888 677778776655433221 33566666654
Q ss_pred HHHhHHHHH-HHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCC
Q 006709 173 EAAGGIRMM-IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (634)
Q Consensus 173 ~a~G~in~~-Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G 251 (634)
.+.|+++.. ++.. .|+++|++ ++++++.+..+++.++ ++ .+++..++.+.|+.+++.|
T Consensus 75 ~~~Ge~~s~~~~~~--------~l~~~Gi~----a~~l~~~~~~~~t~~~--------~~-~~~v~~~~~~~l~~~l~~~ 133 (403)
T PRK08210 75 MSCGEIISSVVFSN--------MLNENGIK----AVALTGGQAGIITDDN--------FT-NAKIIEVNPDRILEALEEG 133 (403)
T ss_pred HhHhHHHHHHHHHH--------HHHhCCCC----eEEechHHccEEccCC--------CC-ceeeehhhHHHHHHHHhcC
Confidence 678888754 3332 47899998 8899988877777553 22 3677788899999999999
Q ss_pred cEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHh
Q 006709 252 CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 252 ~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~ 318 (634)
.|||+++. +.+.+|+++++ ++|.+|+.||.+|+||+++|+|||||++ +++++|++++.+|+.+++..
T Consensus 134 ~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~ 211 (403)
T PRK08210 134 DVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQ 211 (403)
T ss_pred CEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHC
Confidence 99999997 67888999888 7999999999999999999999999973 36999999999999988754
No 50
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=197.63 Aligned_cols=147 Identities=39% Similarity=0.738 Sum_probs=140.4
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgq 528 (634)
++||.|+.+|++.|.+++.++...+.+++++.+.++..++.|+|++++|+++||+++.|+.+++.+|+.+|+|||+|||+
T Consensus 1 ~~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~ 80 (153)
T COG1246 1 EQIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGS 80 (153)
T ss_pred CceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCC
Confidence 36999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecccccchhHhhhhcc
Q 006709 529 GQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRIN 608 (634)
Q Consensus 529 GiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~ 608 (634)
|+|..|| ++++..|++.|++.+|+.||.+.+||+++||...+...+|+..|+.++
T Consensus 81 G~G~~Ll-------------------------~~~~~~Ar~~gi~~lf~LTt~~~~~F~~~GF~~vd~~~LP~~~~~~~~ 135 (153)
T COG1246 81 GRGERLL-------------------------ERLLADARELGIKELFVLTTRSPEFFAERGFTRVDKDELPEEVWSSYN 135 (153)
T ss_pred CcHHHHH-------------------------HHHHHHHHHcCCceeeeeecccHHHHHHcCCeECccccCCHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999
Q ss_pred CC-CCceEEEeec
Q 006709 609 LS-RNSKYYMKKL 620 (634)
Q Consensus 609 ~~-~~s~~~~k~l 620 (634)
+. +.+++.+..+
T Consensus 136 ~~~~~~~~~~~~~ 148 (153)
T COG1246 136 FCERRSKCLAFDL 148 (153)
T ss_pred hhhhhhhHHHHHH
Confidence 98 7787766544
No 51
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.89 E-value=1.6e-21 Score=201.61 Aligned_cols=212 Identities=21% Similarity=0.235 Sum_probs=151.8
Q ss_pred CeEEEEECCccCCCCC---hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHH---HcCCcccccCCccCCCHHHHHHHHH
Q 006709 100 GTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS---ERGHEAKYLGRYRITDSESLAAAME 173 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~---l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~---~lg~~~~~~~G~RvT~~~~l~~~~~ 173 (634)
..+|||||||+|++++ +.+++++|+.+.+ +++++||||||++.+...+ .+|++ ...++....
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~-----------~~~~~~~~~ 98 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMP-----------TGVLAKLGA 98 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCC-----------chHHHHHHH
Confidence 5699999999999876 7899999999876 7899999999998854321 23332 122323333
Q ss_pred HHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcE
Q 006709 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 253 (634)
Q Consensus 174 a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~I 253 (634)
++..+|..++.. .|..+|++ ++ ...+...++.+|+.|+|
T Consensus 99 aa~~ln~lv~~~--------~l~~~g~~----~i-----------------------------~~~~~~~l~~lL~~g~v 137 (262)
T cd04255 99 SVSEQNAEMLAT--------LLAKHGGS----KV-----------------------------GHGDLLQLPTFLKAGRA 137 (262)
T ss_pred HHHHHHHHHHHH--------HHHHcCCC----cc-----------------------------ccccHHHHHHHHHCCCe
Confidence 445556555543 35677765 11 11244579999999999
Q ss_pred EEEcCCcc-------CCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhh
Q 006709 254 VILSNLGY-------SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 319 (634)
Q Consensus 254 PVv~~v~~-------~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~ 319 (634)
||++++.. +..|...++|+|.+|+++|.+|+||+|+++|||||++ +++++|++++.+++.++....
T Consensus 138 PVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~ 217 (262)
T cd04255 138 PVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDD 217 (262)
T ss_pred EEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCC
Confidence 99998742 1224567999999999999999999999999999973 368999999987665442100
Q ss_pred chhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccC
Q 006709 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (634)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~ 399 (634)
. + ..||
T Consensus 218 ~---------------------------------------------------------~--------~~~~--------- 223 (262)
T cd04255 218 L---------------------------------------------------------V--------LERP--------- 223 (262)
T ss_pred C---------------------------------------------------------C--------CcHH---------
Confidence 0 0 0233
Q ss_pred CHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 400 m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
|.+|+++| .++..++|+||+.++. |.+++.++..||.|.
T Consensus 224 ~~~~l~aa-----~~~~~v~I~~g~~~~~-L~~~l~g~~~GT~i~ 262 (262)
T cd04255 224 VLDLLQNA-----RHVKEVQIVNGLVPGN-LTRALRGEHVGTIIR 262 (262)
T ss_pred HHHHHHHh-----CCCCcEEEEeCCCCCH-HHHHHcCCCCceEeC
Confidence 88888876 2333599999999987 677788888999873
No 52
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.88 E-value=1.9e-21 Score=197.47 Aligned_cols=216 Identities=19% Similarity=0.199 Sum_probs=150.8
Q ss_pred CeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 006709 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~ 171 (634)
+++|||+|||+|++++ +++++++|+.+++.|+++|||||||.+.. .....++ +....+.+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~-g~~~~~~-----------~~~~~d~i 68 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFR-GVELKEL-----------SPTRADQI 68 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHH-HHhccCC-----------ChHHHHHH
Confidence 5799999999998763 68899999999999999999999987643 2111111 12222332
Q ss_pred HHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCC
Q 006709 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (634)
Q Consensus 172 ~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G 251 (634)
......+|..++.. .|.++|++ ++.+.. ++.. +.+...+.+.++.+|+.|
T Consensus 69 g~~~~~ln~~~~~~--------~l~~~gi~----a~~~~~----~~~~--------------~~~~~~~~~~i~~ll~~g 118 (231)
T PRK14558 69 GMLGTVINALYLKD--------IFEKSGLK----AVIVSQ----IVNL--------------PSVEPINYDDIELYFRAG 118 (231)
T ss_pred HHHHHHHHHHHHHH--------HHHHcCCC----eEEecc----cccc--------------chhhhhhHHHHHHHHHCC
Confidence 22222334333232 47899987 444432 1110 111123478999999999
Q ss_pred cEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHHhhchhhh
Q 006709 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRVKQSE 324 (634)
Q Consensus 252 ~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~~~~~~~~ 324 (634)
.|||+++.. +..++++|.+|+.+|..|+||.|+++|||||+ | +++++|++++.+|+.++ +.+
T Consensus 119 ~vpV~~G~~-----~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~~--- 187 (231)
T PRK14558 119 YIVIFAGGT-----SNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLK--- 187 (231)
T ss_pred CEEEEECCC-----CCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---Ccc---
Confidence 999999753 13366899999999999999999999999997 2 35899999997655432 110
Q ss_pred hHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHH
Q 006709 325 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 404 (634)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl 404 (634)
. | +.
T Consensus 188 -----------------------------------------------------~---------------------~--d~ 191 (231)
T PRK14558 188 -----------------------------------------------------V---------------------M--DT 191 (231)
T ss_pred -----------------------------------------------------c---------------------c--cH
Confidence 0 2 24
Q ss_pred HHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccc
Q 006709 405 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (634)
Q Consensus 405 ~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D 446 (634)
.|+..|.+.|++ ++|+|+..++. |..++.++..||.|.++
T Consensus 192 ~a~~~a~~~gi~-v~I~ng~~~~~-l~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 192 EAFSICKKYGIT-ILVINFFEPGN-LLKALKGENVGTLVVPD 231 (231)
T ss_pred HHHHHHHHCCCC-EEEEeCCCCCH-HHHHHCCCCCcEEeCCC
Confidence 566777788997 89999999987 45666778899999764
No 53
>PRK06635 aspartate kinase; Reviewed
Probab=99.88 E-value=2.2e-21 Score=211.99 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=151.3
Q ss_pred CCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCc-hHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHh
Q 006709 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGG-G~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G 176 (634)
|+++|||+||+++.+++ +++++++|+.+.+.|.++|||||| |+.++.+++....... .++...++.+ .+.|
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~------~~~~~~~~~~-~~~G 73 (404)
T PRK06635 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSP------LPDPRELDML-LSTG 73 (404)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhcc------CCCHHHHHHH-hhhh
Confidence 46899999999999876 899999999999889999988886 6777777665432111 1255666654 3446
Q ss_pred -HHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEE
Q 006709 177 -GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (634)
Q Consensus 177 -~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPV 255 (634)
.++..++.. .|+++|++ ++.+++.+..+++..+ |+ .+++..++.+.|+.+++.|.|||
T Consensus 74 e~~~~~~~~~--------~l~~~g~~----a~~l~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~~~l~~~~ipV 132 (404)
T PRK06635 74 EQVSVALLAM--------ALQSLGVK----ARSFTGWQAGIITDSA--------HG-KARITDIDPSRIREALDEGDVVV 132 (404)
T ss_pred HHHHHHHHHH--------HHHhCCCC----eEEeChhhCCEEecCC--------CC-ceEeeecCHHHHHHHHhCCCEEE
Confidence 455544443 47899998 7888888776666442 32 46788889999999999999999
Q ss_pred EcC-CccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHH
Q 006709 256 LSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 256 v~~-v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~ 317 (634)
+++ ++.+.+|+++++ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+.++..
T Consensus 133 i~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~ 205 (404)
T PRK06635 133 VAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELAS 205 (404)
T ss_pred ecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHH
Confidence 998 477888999988 9999999999999999999999999973 3689999999999888753
No 54
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.88 E-value=2.1e-21 Score=197.25 Aligned_cols=215 Identities=20% Similarity=0.190 Sum_probs=152.9
Q ss_pred CeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCchHHH-HHHHHHcCCcccccCCccCCCHHHHHH
Q 006709 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAA 170 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvVLVHGGG~~I-~~~l~~lg~~~~~~~G~RvT~~~~l~~ 170 (634)
+++|||+|||++++++ +.+++++|+.+...|.++|||||||+++ +...+.++ +.+.+. +.
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~-------~~~~~~----d~ 69 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAG-------MDRATA----DY 69 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcC-------CCchhh----hH
Confidence 5799999999998542 6789999999888889999999999875 11122222 223221 22
Q ss_pred HHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcC
Q 006709 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (634)
Q Consensus 171 ~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~ 250 (634)
+.....++|..++.. .|+++|++ +..+++.+-+ ..+ ..++.+.++.+|+.
T Consensus 70 ~g~~~~~~n~~ll~~--------~L~~~Gv~----a~~l~~~~~~----------------~~~--~~~~~~~l~~~l~~ 119 (231)
T cd04254 70 MGMLATVINALALQD--------ALESLGVK----TRVMSAIPMQ----------------GVA--EPYIRRRAIRHLEK 119 (231)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCC----eEEEcHHHhh----------------hhh--cccCHHHHHHHHHC
Confidence 323455667644443 47889987 5555544321 111 24678999999999
Q ss_pred CcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhchhh
Q 006709 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (634)
Q Consensus 251 G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~~~~ 323 (634)
|.|||+++. .| ...+++|.+|+++|.+|+||+|+|+|||||++ +++++|++++.+|+... +.
T Consensus 120 g~ipV~~g~----~G-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~~--- 188 (231)
T cd04254 120 GRVVIFAGG----TG-NPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GL--- 188 (231)
T ss_pred CCEEEEECC----cC-CCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---ch---
Confidence 999999832 22 23558999999999999999999999999972 36889999997765321 11
Q ss_pred hhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHH
Q 006709 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (634)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~K 403 (634)
..-+
T Consensus 189 ----------------------------------------------------------------------------~~~d 192 (231)
T cd04254 189 ----------------------------------------------------------------------------KVMD 192 (231)
T ss_pred ----------------------------------------------------------------------------hhhH
Confidence 1124
Q ss_pred HHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 404 l~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
+.++..|.+.|++ ++|++|..++. |..++.++..||.|.
T Consensus 193 ~~a~~~a~~~gi~-~~I~~g~~~~~-l~~~l~g~~~GT~i~ 231 (231)
T cd04254 193 ATAFTLCRDNNLP-IVVFNINEPGN-LLKAVKGEGVGTLIS 231 (231)
T ss_pred HHHHHHHHHCCCe-EEEEeCCCccH-HHHHHCCCCCCEEeC
Confidence 6677778888997 89999999987 556667778999873
No 55
>PRK08841 aspartate kinase; Validated
Probab=99.87 E-value=1.1e-20 Score=205.80 Aligned_cols=193 Identities=17% Similarity=0.235 Sum_probs=151.8
Q ss_pred CCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH
Q 006709 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~ 177 (634)
|+++|+|+||+.+.+++ ++.++++|+.+.+.|.++||||||++.....+..+.... .+++++.+++++.+....
T Consensus 1 m~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~-----~~~~~~~~~d~l~s~GE~ 75 (392)
T PRK08841 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQV-----DSVPTARELDVLLSAGEQ 75 (392)
T ss_pred CCeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhh-----ccCCCHHHHHHHHHHHHH
Confidence 46899999999998876 899999999999999999999999874444333333321 155677778776444333
Q ss_pred HHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEc
Q 006709 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (634)
Q Consensus 178 in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~ 257 (634)
+...+++. .|++.|++ +..+++.+..+++... + ..+++..++.+.|+++++.|.|||++
T Consensus 76 ~s~~lla~--------~L~~~Gi~----a~~l~~~~~~i~t~~~--------~-~~~~i~~~~~~~i~~ll~~~~vpVv~ 134 (392)
T PRK08841 76 VSMALLAM--------TLNKLGYA----ARSLTGAQANIVTDNQ--------H-NDATIKHIDTSTITELLEQDQIVIVA 134 (392)
T ss_pred HHHHHHHH--------HHHhCCCC----eEEEehhHcCEEecCC--------C-CCceechhhHHHHHHHHhCCCEEEEe
Confidence 44555554 48899998 7888887765555321 1 13677778889999999999999999
Q ss_pred CC-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHH
Q 006709 258 NL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 258 ~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~ 317 (634)
+. +.+.+|++.++ ++|.+|+.+|.+|+||.|+++|||||+ | +++++|++++.+|+.++..
T Consensus 135 Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~ 205 (392)
T PRK08841 135 GFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMAR 205 (392)
T ss_pred CCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHh
Confidence 85 67888998888 999999999999999999999999997 3 4689999999999888754
No 56
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.86 E-value=8.4e-21 Score=207.22 Aligned_cols=192 Identities=19% Similarity=0.223 Sum_probs=150.4
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH-H
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG-I 178 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~-i 178 (634)
++|+|+||+++.+++ +++++++|+.+++.|.++||||||++.++..+.+++...- ..++++.+. +.+. ++|+ +
T Consensus 2 ~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~---~~~~~~~~~-~~i~-~~Ge~~ 76 (401)
T TIGR00656 2 LIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAI---RDAITPRER-DELV-SHGERL 76 (401)
T ss_pred cEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHh---ccCCChHHH-HHHh-hHHHHH
Confidence 589999999999877 8999999999999999999999999888887665542100 013444433 3332 2355 4
Q ss_pred HHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecH-HHHHHHHcCCcEEEEc
Q 006709 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGGCLVILS 257 (634)
Q Consensus 179 n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~-~~I~~LLd~G~IPVv~ 257 (634)
+..++.. .|+++|++ ++++++.+..+++..+ ++ .+++..++. +.|+.+++.|.|||++
T Consensus 77 s~~~~~~--------~l~~~g~~----a~~l~~~~~~~~t~~~--------~~-~~~~~~~~~~~~l~~~l~~~~vpVi~ 135 (401)
T TIGR00656 77 SSALFSG--------ALRDLGVK----AIWLDGGEAGIITDDN--------FG-NAKIDIIATEERLLPLLEEGIIVVVA 135 (401)
T ss_pred HHHHHHH--------HHHhCCCc----eEEeccccceEEeCCC--------CC-ceEeeecchHHHHHHHHhCCCEEEec
Confidence 3433333 47899998 8999988887777543 22 256777888 9999999999999999
Q ss_pred C-CccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHh
Q 006709 258 N-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 258 ~-v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~ 318 (634)
+ ++.+..|+..++ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+.+++..
T Consensus 136 g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~ 207 (401)
T TIGR00656 136 GFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATF 207 (401)
T ss_pred CcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHc
Confidence 8 577778888876 6999999999999999999999999973 36899999999999998754
No 57
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.86 E-value=4e-20 Score=188.09 Aligned_cols=215 Identities=20% Similarity=0.181 Sum_probs=150.7
Q ss_pred CeEEEEECCccCCCC-----C---hHHHHHHHHHHHhCCCeEEEEeCchHHHHHH-HHHcCCcccccCCccCCCHHHHHH
Q 006709 100 GTFVVIISGEIVSSP-----Y---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLAA 170 (634)
Q Consensus 100 k~iVIKLGGsvL~~~-----~---l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~-l~~lg~~~~~~~G~RvT~~~~l~~ 170 (634)
+++|||+|||+|+++ + ++++++.|+.+...|+++|||||||++.... .++++.... .. +.
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~--------~~---d~ 70 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRV--------TA---DY 70 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCc--------cH---HH
Confidence 589999999999852 1 6789999998888889999999999764322 355554321 11 22
Q ss_pred HHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcC
Q 006709 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (634)
Q Consensus 171 ~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~ 250 (634)
.......++..++.. .|.++|++ +..+++.+-. + .....+.+.++.+|++
T Consensus 71 ~g~~~~~l~~~l~~~--------~L~~~Gi~----a~~l~~~~~~-----~-------------~~~~~~~~~i~~ll~~ 120 (233)
T TIGR02075 71 MGMLATVINGLALRD--------ALEKLGVK----TRVLSAISMP-----Q-------------ICESYIRRKAIKHLEK 120 (233)
T ss_pred HHHHHHHHHHHHHHH--------HHHhCCCC----cEEeccccCC-----C-------------CccccCHHHHHHHHHC
Confidence 222222345444332 47889987 5555544311 0 0012346899999999
Q ss_pred CcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeec-cccc---C----CCCccccccCHHHHHHHHHhhchh
Q 006709 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPIL---D----ESGHLIRFLTLQEADSLIRQRVKQ 322 (634)
Q Consensus 251 G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTD-Vdgl---d----~~gklI~~ls~~e~~~li~~~~~~ 322 (634)
|.|||++... | ..++++|.+|+.||..|+||+|+|+|| |||+ | +++++|++++.+|+... +.
T Consensus 121 g~VpV~~g~~----g-~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~-- 190 (233)
T TIGR02075 121 GKVVIFSGGT----G-NPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NL-- 190 (233)
T ss_pred CCEEEEECCC----C-CCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CH--
Confidence 9999987431 2 246889999999999999999999999 9997 2 35889999997764321 11
Q ss_pred hhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHH
Q 006709 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (634)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~ 402 (634)
...
T Consensus 191 -----------------------------------------------------------------------------~~~ 193 (233)
T TIGR02075 191 -----------------------------------------------------------------------------KVM 193 (233)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 012
Q ss_pred HHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 403 Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
++.++..|.+.|++ ++|++|..++. |..++.++..||.|.
T Consensus 194 d~~~~~~a~~~~i~-v~i~~g~~~~~-l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 194 DLTAFALARDNNLP-IVVFNIDEPGA-LKKVILGKGIGTLVS 233 (233)
T ss_pred HHHHHHHHHHCCCe-EEEEeCCCcch-HHHHHCCCCCCEEeC
Confidence 35677778888996 89999998987 556667888999873
No 58
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.85 E-value=4.8e-20 Score=185.89 Aligned_cols=209 Identities=16% Similarity=0.158 Sum_probs=148.3
Q ss_pred EEEEECCccCCCC---C-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH
Q 006709 102 FVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (634)
Q Consensus 102 iVIKLGGsvL~~~---~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G~ 177 (634)
+|||+||++|+++ + +.+++++|+.+... +++|||||||.+++.+.+.. ..+ . .....++........
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~---~~~----~-~~~~~~~~~g~~~~~ 71 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVA---REL----G-ASETFLDEIGIDATR 71 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHH---HHc----C-CCHHHHHHhhhHHHH
Confidence 5999999999885 2 78999999988766 89999999999875543211 000 0 122244444344567
Q ss_pred HHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEc
Q 006709 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (634)
Q Consensus 178 in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~ 257 (634)
+|..+++.+ |...+++ .+. .+.....++++.|.|||+.
T Consensus 72 ln~~~l~~l--------l~~~~~~----~~~------------------------------~~~~~~~~~l~~g~ipv~~ 109 (221)
T TIGR02076 72 LNAMLLIAA--------LGDDAYP----KVP------------------------------ENFEEALEAMSLGKIVVMG 109 (221)
T ss_pred HHHHHHHHH--------HHhcCCC----CcC------------------------------CCHHHHHHHHHcCCEEEEc
Confidence 777666653 4444544 110 1223446678899999998
Q ss_pred CCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhchhhhhHHHHH
Q 006709 258 NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYV 330 (634)
Q Consensus 258 ~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~~~~~~~~~~~ 330 (634)
+.. . .+++|.+|+++|.+|+||+|+|+|||||++ +++++|++++.+|+.++..+.
T Consensus 110 G~~---~----~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~----------- 171 (221)
T TIGR02076 110 GTH---P----GHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSS----------- 171 (221)
T ss_pred CCC---C----CCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCC-----------
Confidence 742 1 378999999999999999999999999973 368999999988877764211
Q ss_pred HhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHHH
Q 006709 331 KAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFV 410 (634)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~a 410 (634)
.+++|. + |..++.++..+
T Consensus 172 -----------------------------------------~~~~g~------------~---------~~~~~~a~~~~ 189 (221)
T TIGR02076 172 -----------------------------------------SVKAGS------------N---------EVVDPLAAKII 189 (221)
T ss_pred -----------------------------------------CccCCC------------C---------ceeHHHHHHHH
Confidence 111211 2 67788888888
Q ss_pred HHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 411 CRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 411 ~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
.+.|++ ++|++|..++.|+ .++.++..||.|
T Consensus 190 ~~~~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i 220 (221)
T TIGR02076 190 ERSKIR-TIVVNGRDPENLE-KVLKGEHVGTII 220 (221)
T ss_pred HHCCCc-EEEECCCCccHHH-HHHCCCCCCeEe
Confidence 888886 9999999998755 567777889987
No 59
>PRK07431 aspartate kinase; Provisional
Probab=99.85 E-value=4.3e-20 Score=210.96 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=146.1
Q ss_pred CCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCc-hHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHh
Q 006709 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGG-G~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G 176 (634)
|+++|+|+||+++.+++ ++.++++|+.+.+.|.++|||||+ |...+.+. +++.... .-.+...++.+....+
T Consensus 1 m~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~-~~~~~~t-----~~~~~~~~~~~ls~Ge 74 (587)
T PRK07431 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELV-KLAKEIS-----SNPPRREMDMLLSTGE 74 (587)
T ss_pred CCeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHH-HHHHHhc-----cCCCHHHHHHHHHHhH
Confidence 46899999999998866 899999999999999999999996 44444443 4432110 0123334444433334
Q ss_pred HHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEE
Q 006709 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVIL 256 (634)
Q Consensus 177 ~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv 256 (634)
.++..+++. .|+++|++ ++++++.+..+++... ++ .+++..++.+.|+++++.|.|||+
T Consensus 75 ~~s~~l~~~--------~l~~~gi~----a~~l~~~~~~~~~~~~--------~~-~~~i~~~~~~~l~~~l~~g~vpVv 133 (587)
T PRK07431 75 QVSIALLSM--------ALHELGQP----AISLTGAQVGIVTESE--------HG-RARILEIKTDRIQRHLDAGKVVVV 133 (587)
T ss_pred HHHHHHHHH--------HHHHCCCC----eEEechhHcCeEecCC--------CC-ceeeeeccHHHHHHHHhCCCeEEe
Confidence 566667654 47899998 8999988877766442 23 378888899999999999999999
Q ss_pred cCC-cc--CCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC---C----CCccccccCHHHHHHHHH
Q 006709 257 SNL-GY--SSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 257 ~~v-~~--~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld---~----~gklI~~ls~~e~~~li~ 317 (634)
++. +. ...|++.++ ++|.+|+.+|.+|+||+|+++|||||++ | ++++|++++.+|+.++..
T Consensus 134 ~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~ 207 (587)
T PRK07431 134 AGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELAS 207 (587)
T ss_pred cCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHh
Confidence 975 43 344777765 8999999999999999999999999973 3 689999999999988863
No 60
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.85 E-value=7e-20 Score=184.81 Aligned_cols=209 Identities=16% Similarity=0.142 Sum_probs=150.1
Q ss_pred eEEEEECCccCCCC---C-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHh
Q 006709 101 TFVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (634)
Q Consensus 101 ~iVIKLGGsvL~~~---~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~~~~a~G 176 (634)
++|||||||+++++ + +.++++.|+.+.. |.++|||||||++++.+.+.... +.. +...++.......
T Consensus 1 ~iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~-------~~~-~~~~~d~~g~~~~ 71 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARK-------LGA-SEAFLDEIGIMAT 71 (221)
T ss_pred CEEEEeccceeCCCCChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHH-------cCC-CHHHHHHhcCHHH
Confidence 57999999999874 2 7888999988765 78999999999998776443210 001 1122333323344
Q ss_pred HHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEE
Q 006709 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVIL 256 (634)
Q Consensus 177 ~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv 256 (634)
.+|..+++.+ ..+|++ ++. ++.+.+.++|+.|.|||+
T Consensus 72 ~ln~~~~~~~---------l~~~~~----~~~------------------------------~~~~~~~~~l~~g~vpv~ 108 (221)
T cd04253 72 RLNARLLIAA---------LGDAYP----PVP------------------------------TSYEEALEAMFTGKIVVM 108 (221)
T ss_pred HHHHHHHHHH---------HhcCCC----cCC------------------------------CCHHHHHHHHHcCCeEEE
Confidence 6676666653 234543 111 135677889999999999
Q ss_pred cCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhchhhhhHHHH
Q 006709 257 SNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANY 329 (634)
Q Consensus 257 ~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~~~~~~~~~~ 329 (634)
.+... .+++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+.++....
T Consensus 109 ~G~~~-------~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~---------- 171 (221)
T cd04253 109 GGTEP-------GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKS---------- 171 (221)
T ss_pred ECCCC-------CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCC----------
Confidence 97532 357899999999999999999999999972 358999999988877664210
Q ss_pred HHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHHHHHHHH
Q 006709 330 VKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAF 409 (634)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~Kl~AA~~ 409 (634)
.+..| + .|..++.++..
T Consensus 172 ------------------------------------------~~~~g-------------~--------~~~~d~~a~~~ 188 (221)
T cd04253 172 ------------------------------------------SWKAG-------------S--------NEPFDPLAAKI 188 (221)
T ss_pred ------------------------------------------CcCCC-------------C--------CcchHHHHHHH
Confidence 01111 1 15678888999
Q ss_pred HHHcCCceEEEccCCcchhHHHHHHhhcCCcccc
Q 006709 410 VCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (634)
Q Consensus 410 a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I 443 (634)
+.+.|++ ++|++|..++. |.++++++..||.|
T Consensus 189 ~~~~gi~-~~I~~g~~p~~-l~~~l~g~~~GT~I 220 (221)
T cd04253 189 IERSGIK-TIVVDGRDPEN-LERALKGEFVGTII 220 (221)
T ss_pred HHHCCCe-EEEECCCCccH-HHHHHCCCCCCeEe
Confidence 9999997 89999998986 66778888899987
No 61
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.81 E-value=1.3e-18 Score=173.68 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=105.7
Q ss_pred EEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHH---HcCCcccccCCccCCCHHHHHHHHHHHhHHH
Q 006709 103 VVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS---ERGHEAKYLGRYRITDSESLAAAMEAAGGIR 179 (634)
Q Consensus 103 VIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~---~lg~~~~~~~G~RvT~~~~l~~~~~a~G~in 179 (634)
|||||||.+.+ +..+.+.|+.+. |.+++||.|||++++.+.. ++|+ +....+.....+..+|
T Consensus 1 vvKiGGsl~~~--~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~-----------~~~~ad~mgilat~~n 65 (203)
T cd04240 1 VVKIGGSLIRE--AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGL-----------SDAAAHWMAILAMEQY 65 (203)
T ss_pred CEEEccccccc--HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCC-----------ChHHHHHHHHHHHHHH
Confidence 79999999865 556666665553 8899999999999766543 3333 2333333322333344
Q ss_pred HHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcCC
Q 006709 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (634)
Q Consensus 180 ~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v 259 (634)
-.+.+... . + . ..-+...+.+++..|.|||+.|.
T Consensus 66 a~~l~~~~--------~----~--------------~--------------------~~~~~~~~~~~~~~g~ipV~~P~ 99 (203)
T cd04240 66 GYLLADLE--------P----R--------------L--------------------VARTLAELTDVLERGKIAILLPY 99 (203)
T ss_pred HHHHhccC--------C----c--------------c--------------------ccCCHHHHHHHHHCCCcEEEeCc
Confidence 33322110 0 0 0 01134688889999999999998
Q ss_pred cc----CCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-CCCccccccCHHHH
Q 006709 260 GY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEA 312 (634)
Q Consensus 260 ~~----~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-~~gklI~~ls~~e~ 312 (634)
.. +..++.+|+|+|.+|+++|.+|+|++||++|||||++ .++++|++++..|+
T Consensus 100 ~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~ 157 (203)
T cd04240 100 RLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL 157 (203)
T ss_pred hhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHh
Confidence 65 4567789999999999999999999999999999974 56999999987654
No 62
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.79 E-value=1.4e-17 Score=170.85 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=150.9
Q ss_pred CCeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCchHHH-HHHHHHcCCcccccCCccCCCHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLA 169 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvVLVHGGG~~I-~~~l~~lg~~~~~~~G~RvT~~~~l~ 169 (634)
.+++|||+||++|.+++ ++.+++.|+.+.+.|+++|||||||... ...++++++ +...+|
T Consensus 4 ~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~-----------~~~~~D 72 (247)
T PRK14557 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGI-----------DRVEAD 72 (247)
T ss_pred ccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCC-----------ChHHHH
Confidence 37899999999998742 7889999999989999999999998633 344555543 233446
Q ss_pred HHHHHHhHHHHHHHHhcCCCCchhhHHhc-CCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHH
Q 006709 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRH-GDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (634)
Q Consensus 170 ~~~~a~G~in~~Lv~~L~~~~~~~~L~~~-Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LL 248 (634)
.+.....++|..+... .|+.. +.. ++ +++.. .+......++...+...|
T Consensus 73 ~ig~~g~~lna~ll~~--------~l~~~~~~~-----~~-------i~t~~----------~~~~~~~~~~~~~~~~~l 122 (247)
T PRK14557 73 NIGTLGTIINSLMLRG--------VLTSKTNKE-----VR-------VMTSI----------PFNAVAEPYIRLRAVHHL 122 (247)
T ss_pred HHHHHHHHHHHHHHHH--------HHHhhhCCc-----ee-------EEecc----------ccccccchhhHHHHHHHH
Confidence 6555667777666654 24432 322 11 22211 111112234445577779
Q ss_pred cCCcEEEEcCC-ccCCCCceeeechHHHHHHHHHHcCCCEEEEe-eccccc---C----CCCccccccCHHHHHHHHHhh
Q 006709 249 DGGCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICI-IDGPIL---D----ESGHLIRFLTLQEADSLIRQR 319 (634)
Q Consensus 249 d~G~IPVv~~v-~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~L-TDVdgl---d----~~gklI~~ls~~e~~~li~~~ 319 (634)
++|.|||+.+. +. -.+++|.+|+.+|..++||.|+++ |||||+ | |++++|++++..|+. ..+
T Consensus 123 ~~g~VvV~~G~~g~------~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~ 193 (247)
T PRK14557 123 DNGYIVIFGGGNGQ------PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQN 193 (247)
T ss_pred hCCCEEEEECCcCC------CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccC
Confidence 99999999763 22 245699999999999999999999 599997 2 368999999976541 111
Q ss_pred chhhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccC
Q 006709 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (634)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~ 399 (634)
. . -
T Consensus 194 ~---------------------------------------------------------~--------------------~ 196 (247)
T PRK14557 194 I---------------------------------------------------------Q--------------------V 196 (247)
T ss_pred H---------------------------------------------------------H--------------------H
Confidence 0 0 0
Q ss_pred CHHHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccccc
Q 006709 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (634)
Q Consensus 400 m~~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~D 446 (634)
|. ..|+..|.+.|++ ++|+||..++. |..++.++..||.|.+.
T Consensus 197 ~~--~~A~~~a~~~gi~-v~I~ng~~~~~-l~~~l~g~~~GT~i~~~ 239 (247)
T PRK14557 197 MD--QAALLLARDYNLP-AHVFNFDEPGV-MRRICLGEHVGTLINDD 239 (247)
T ss_pred HH--HHHHHHHHHCCCc-EEEEeCCCChH-HHHHHcCCCCcEEEecC
Confidence 32 3577888889997 89999999986 56777888899999753
No 63
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.79 E-value=2.2e-18 Score=190.57 Aligned_cols=196 Identities=16% Similarity=0.181 Sum_probs=147.1
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCc-------------------
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRY------------------- 160 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~------------------- 160 (634)
++|+|+||+.+.+.+ +.++++.|......|.++|+|||+.+.++..|.++........+.
T Consensus 2 ~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 81 (441)
T TIGR00657 2 LIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIP 81 (441)
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhh
Confidence 579999999999876 888999998877789999999999888877776655433221110
Q ss_pred --------cCCC--------HHHHHHHHHHHh-HHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecc
Q 006709 161 --------RITD--------SESLAAAMEAAG-GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG 223 (634)
Q Consensus 161 --------RvT~--------~~~l~~~~~a~G-~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g 223 (634)
+.++ ....+. ..+.| .++..++.. .|+++|++ ++++++.+..+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~-ils~GE~~s~~l~~~--------~l~~~Gi~----a~~l~~~~~~l~t~~~-- 146 (441)
T TIGR00657 82 QAIAEELKRLLDAELVLEEKPREMDR-ILSFGERLSAALLSA--------ALEELGVK----AVSLLGGEAGILTDSN-- 146 (441)
T ss_pred HHHHHHHHHHHHHHHhhhcCcchHhh-eecHHHHHHHHHHHH--------HHHhCCCC----CEEEEcCcceEEecCC--
Confidence 0000 001111 12335 445544444 58899988 8999999887877553
Q ss_pred cccCccccccceEEEecHHHHHHHHcCCcEEEEcC-CccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-
Q 006709 224 VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD- 298 (634)
Q Consensus 224 ~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~-v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld- 298 (634)
++....+..++.+.|+.+++.|.|||+++ ++.+..|++.++ ++|.+|+.+|.+|+|++|+++|||||++
T Consensus 147 ------~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~ 220 (441)
T TIGR00657 147 ------FGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYT 220 (441)
T ss_pred ------CCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCc
Confidence 22222356778899999999999999999 467788888877 7999999999999999999999999973
Q ss_pred --C----CCccccccCHHHHHHHHH
Q 006709 299 --E----SGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 299 --~----~gklI~~ls~~e~~~li~ 317 (634)
| +++++++++.+|+.+++.
T Consensus 221 ~DP~~~~~a~~i~~is~~ea~el~~ 245 (441)
T TIGR00657 221 TDPRIVPDARRIDEISYEEMLELAS 245 (441)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHh
Confidence 3 689999999999988864
No 64
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.75 E-value=1.4e-16 Score=162.70 Aligned_cols=219 Identities=19% Similarity=0.180 Sum_probs=151.6
Q ss_pred CCeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHH
Q 006709 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAA 170 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~~ 170 (634)
-+++|+||+|++|..++ +..++++|+.+.+.|+++.||.|||....-...+.+. | .+....|.
T Consensus 15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~------~---~~r~~~D~ 85 (249)
T PRK14556 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGN------K---IRRATADS 85 (249)
T ss_pred hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccC------C---CchhhhhH
Confidence 37899999999997643 7899999999999999999999999876532222111 1 23344455
Q ss_pred HHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcC
Q 006709 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (634)
Q Consensus 171 ~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~ 250 (634)
+.+++..+|..+... .|.+.|++. .-++..... +.....+.+.+.+.|+.
T Consensus 86 ~GmlaT~iNal~l~~--------~l~~~~~~~----~v~sa~~~~------------------~~~e~~~~~~~~~~l~~ 135 (249)
T PRK14556 86 MGMIATMINALALRD--------MLISEGVDA----EVFSAKGVD------------------GLLKVASAHEFNQELAK 135 (249)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCCe----EEeeccccC------------------cCCCCCCHHHHHHHHhC
Confidence 545666777544443 477888872 222211100 01112366788889999
Q ss_pred CcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHHHhhchhh
Q 006709 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (634)
Q Consensus 251 G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li~~~~~~~ 323 (634)
|.|||+.+-. | .-++++|.+|+++|..++||.|+++|||||++ |+++++++++..|.... +.
T Consensus 136 g~vvi~~gg~----G-~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l--- 204 (249)
T PRK14556 136 GRVLIFAGGT----G-NPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSK---EL--- 204 (249)
T ss_pred CCEEEEECCC----C-CCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhccc---ch---
Confidence 9999976521 1 23566899999999999999999999999983 35788888876543210 00
Q ss_pred hhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCHHH
Q 006709 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (634)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~~K 403 (634)
-...
T Consensus 205 ----------------------------------------------------------------------------~vmd 208 (249)
T PRK14556 205 ----------------------------------------------------------------------------NVMD 208 (249)
T ss_pred ----------------------------------------------------------------------------HhHH
Confidence 0112
Q ss_pred HHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCcccccc
Q 006709 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (634)
Q Consensus 404 l~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~~ 445 (634)
..|+..+.+.|++ ++|+|+..++. |..++.++..||.|.-
T Consensus 209 ~~A~~~a~~~gIp-i~I~ng~~~~~-L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 209 LGAFTQCRDFGIP-IYVFDLTQPNA-LVDAVLDSKYGTWVTL 248 (249)
T ss_pred HHHHHHHHHCCCc-EEEECCCCchH-HHHHHcCCCCceEEEe
Confidence 4577778899997 89999999987 5566778889999854
No 65
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.67 E-value=1.2e-15 Score=160.74 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=130.6
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCccc------c---c-----------C-
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK------Y---L-----------G- 158 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~------~---~-----------~- 158 (634)
++|.|+||+.+.+++ +..+++-|... ..+.++|+|.++-..++..|.++..... + . .
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 1 RLVMKFGGTSVGSAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 479999999999865 67777766654 4578899999875445444433211000 0 0 0
Q ss_pred --------------------------Cc---cCCCHHHHHHHHHHHhHH-HHHHHHhcCCCCchhhHHhcCCCCcceeEE
Q 006709 159 --------------------------RY---RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVG 208 (634)
Q Consensus 159 --------------------------G~---RvT~~~~l~~~~~a~G~i-n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~ 208 (634)
+. +-.++...+.+ .+.|+. +..++++ .|+++|++ +..
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i-~s~GE~lSa~lla~--------~L~~~Gi~----a~~ 146 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYI-VSFGERLSAPIFSA--------ALRSLGIK----ARA 146 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHh-ccHhHHHHHHHHHH--------HHHhCCCC----eEE
Confidence 00 00011111222 233433 4444444 58899998 889
Q ss_pred eeccCCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcC-CccCCCCceeee---chHHHHHHHHHHcC
Q 006709 209 VSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIE 284 (634)
Q Consensus 209 l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~-v~~~~~Gei~ni---d~D~lAa~LA~aL~ 284 (634)
+++.+..+++....+. . ....+....++. .+..+++.|.|||+++ ++.+.+|++.++ ++|.+|+.+|.+|+
T Consensus 147 l~~~~~~i~t~~~~~~--a--~~~~~~~~~i~~-~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~ 221 (298)
T cd04244 147 LDGGEAGIITDDNFGN--A--RPLPATYERVRK-RLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALD 221 (298)
T ss_pred EcHHHcceeecCcccc--c--ccchhHHHHHHH-HHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcC
Confidence 9888877776542210 0 000122223333 4557889999999999 477888998888 99999999999999
Q ss_pred CCEEEEeecccccC---C----CCccccccCHHHHHHHHH
Q 006709 285 ADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 285 AdkLI~LTDVdgld---~----~gklI~~ls~~e~~~li~ 317 (634)
|++|+++|||+|+. | ++++|++++.+|+.++..
T Consensus 222 a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~ 261 (298)
T cd04244 222 ADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAY 261 (298)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHh
Confidence 99999999999973 3 689999999999998864
No 66
>PRK06291 aspartate kinase; Provisional
Probab=99.63 E-value=1e-14 Score=162.60 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=131.6
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCccc-------c----------------
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-------Y---------------- 156 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~-------~---------------- 156 (634)
++|.|+||+.+.+.+ ++.+++-|......+.++|+|.++-..++..|.++..... +
T Consensus 2 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (465)
T PRK06291 2 RLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYKAIE 81 (465)
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 468999999999866 7777777765555788899998874444433322110000 0
Q ss_pred --c------------------------CCc---cCCCHHHHHHHHHHHhHH-HHHHHHhcCCCCchhhHHhcCCCCccee
Q 006709 157 --L------------------------GRY---RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHE 206 (634)
Q Consensus 157 --~------------------------~G~---RvT~~~~l~~~~~a~G~i-n~~Lv~~L~~~~~~~~L~~~Gi~~~~~a 206 (634)
. .+. +-.++...+.+ .+.|+. +..++.. .|+++|++ +
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i-~s~GE~~Sa~l~~~--------~L~~~Gi~----a 148 (465)
T PRK06291 82 EAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYI-LSFGERLSAPILSG--------ALRDLGIK----S 148 (465)
T ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHH-HhhhHHHHHHHHHH--------HHHhCCCC----e
Confidence 0 000 00112233333 333433 4555554 48899998 8
Q ss_pred EEeeccCCceeeeeecccccCccccccceEEEec----HHHHHHHHcCCcEEEEcCC-ccCCCCceeee---chHHHHHH
Q 006709 207 VGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD----VTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATA 278 (634)
Q Consensus 207 v~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd----~~~I~~LLd~G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~ 278 (634)
..+++.+..+++.... +..+.. ..+ .+.++.+++.|.|||+.+. +.+.+|++.++ ++|.+|+.
T Consensus 149 ~~l~~~~~~i~t~~~~--------~~~~~~-~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~ 219 (465)
T PRK06291 149 VALTGGEAGIITDSNF--------GNARPL-PKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAI 219 (465)
T ss_pred EEEchHHCcEEecCCC--------Cceeec-hhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHH
Confidence 8898888777775432 211110 011 2468888999999999994 77888998888 99999999
Q ss_pred HHHHcCCCEEEEeecccccC-------CCCccccccCHHHHHHHH
Q 006709 279 CALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 316 (634)
Q Consensus 279 LA~aL~AdkLI~LTDVdgld-------~~gklI~~ls~~e~~~li 316 (634)
+|.+|+||.|+++|||||++ |++++|++++.+|+.++.
T Consensus 220 ~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~ 264 (465)
T PRK06291 220 IGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELS 264 (465)
T ss_pred HHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHH
Confidence 99999999999999999973 368999999999888774
No 67
>PRK07757 acetyltransferase; Provisional
Probab=99.59 E-value=2.6e-14 Score=134.23 Aligned_cols=131 Identities=32% Similarity=0.585 Sum_probs=112.6
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgq 528 (634)
..+|+++++|++.+.+++..+.......+.+.+++...+..++++..+++++|++.+.+. ....++|..++|+|+|||+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~~-~~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHIL-WEDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEec-cCCceEEEEEEECHHHcCC
Confidence 368999999999999998876666555566778888888888999999999999999853 4456789999999999999
Q ss_pred CHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecccccchhHhhhh
Q 006709 529 GQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKR 606 (634)
Q Consensus 529 GiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~~~~~~~~~~~ 606 (634)
|+|++|+ ..+++.+++.|+..+.+.+ .+.+||+|+||+..+...+|+..|..
T Consensus 81 Glg~~Ll-------------------------~~l~~~a~~~g~~~i~~~~-~~~~~Y~k~GF~~~~~~~~~~~~~~~ 132 (152)
T PRK07757 81 GIGRMLV-------------------------EACLEEARELGVKRVFALT-YQPEFFEKLGFREVDKEALPQKVWAD 132 (152)
T ss_pred CHHHHHH-------------------------HHHHHHHHhCCCCeEEEEe-CcHHHHHHCCCEEcccccCChhHHhc
Confidence 9999999 9999999999999987765 46789999999999998899887764
No 68
>PRK08373 aspartate kinase; Validated
Probab=99.59 E-value=1.3e-13 Score=147.34 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=130.6
Q ss_pred cCCeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCccc-------------c--------
Q 006709 98 RGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-------------Y-------- 156 (634)
Q Consensus 98 r~k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~-------------~-------- 156 (634)
..+++|.|+||+.+.+ .++.+++-|... ..|.++|+|.++...++..|.++..... .
T Consensus 2 ~~~m~V~KFGGsSv~~-~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~ 79 (341)
T PRK08373 2 VEKMIVVKFGGSSVRY-DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDL 79 (341)
T ss_pred CCCCEEEEECCcchHh-HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccch
Confidence 4688999999999987 466666666643 3578999999986555554433211000 0
Q ss_pred ----------cCCc-cCCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccc
Q 006709 157 ----------LGRY-RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVV 225 (634)
Q Consensus 157 ----------~~G~-RvT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~ 225 (634)
.... ...++..++.+.....+++..+++. .|+++|++ +..+++.+- +.+..
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~D~ils~GE~lSa~lla~--------~L~~~Gi~----a~~l~~~~~-i~t~~----- 141 (341)
T PRK08373 80 EILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAE--------ALENEGIK----GKVVDPWEI-LEAKG----- 141 (341)
T ss_pred hhHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHH--------HHHHCCCc----eEEEeHHHh-eeecC-----
Confidence 0000 1122344555544444455666665 58999998 666655432 22211
Q ss_pred cCccccccceE----EEecHHHHHHHHcCCcEEEEcCCccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC
Q 006709 226 DGVDYGATGEV----KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD 298 (634)
Q Consensus 226 ~g~d~g~~G~v----~~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld 298 (634)
+++ ..++ ...+.+.+..+++.|.|||+++...+.+|++.++ ++|.+|+.+|.+|+|++++|+|||||+.
T Consensus 142 ---~~~-~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVy 217 (341)
T PRK08373 142 ---SFG-NAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIY 217 (341)
T ss_pred ---Ccc-ceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccC
Confidence 111 1111 2356689999999999999998755667876654 8999999999999999999999999973
Q ss_pred -------CCCccccccCHHHHHHHH
Q 006709 299 -------ESGHLIRFLTLQEADSLI 316 (634)
Q Consensus 299 -------~~gklI~~ls~~e~~~li 316 (634)
+++++|++++.+|+.++.
T Consensus 218 taDP~~v~~A~~i~~isy~Ea~ela 242 (341)
T PRK08373 218 TADPKLVPSARLIPYLSYDEALIAA 242 (341)
T ss_pred CCCCCCCCCCeEcccCCHHHHHHHH
Confidence 358899999999988764
No 69
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.58 E-value=1e-14 Score=135.04 Aligned_cols=125 Identities=21% Similarity=0.303 Sum_probs=96.9
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecC----CCeEEEEEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAAIG 520 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l----~~~~V~~~~g~iiG~~~l~~~~~----~~~~ei~~l~ 520 (634)
..||+++.+|++.+.+++.......+......+.+.+.+ ..++|++.++++||++.+..... ...++|..++
T Consensus 4 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~ 83 (144)
T PRK10146 4 CELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELV 83 (144)
T ss_pred cEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeE
Confidence 468999999999999998755433222111123343333 26788899999999999864321 1246788999
Q ss_pred ECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 521 VSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 521 V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
|+|+|||||+|++|+ +++++.|++.|++.+.+.+ ..|.+||+++||+..+.
T Consensus 84 v~p~~rg~GiG~~Ll-------------------------~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 84 VMPQARGLNVGSKLL-------------------------AWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred ECHHHcCCCHHHHHH-------------------------HHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 999999999999999 9999999999999999988 47999999999998765
Q ss_pred cc
Q 006709 597 EM 598 (634)
Q Consensus 597 ~~ 598 (634)
.+
T Consensus 139 ~~ 140 (144)
T PRK10146 139 RF 140 (144)
T ss_pred hh
Confidence 43
No 70
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=3.2e-13 Score=135.51 Aligned_cols=218 Identities=20% Similarity=0.172 Sum_probs=152.3
Q ss_pred cCCeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHH
Q 006709 98 RGGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (634)
Q Consensus 98 r~k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~~G~RvT~~~~l~ 169 (634)
+.+++|+||||++|..++ +++++++|+.+.+.|.+|.||.|||........... | .+....|
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~-------g---~~r~~~D 73 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAA-------G---MDRVTAD 73 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHc-------C---Cchhhhh
Confidence 457999999999998732 789999999999999999999999977654433221 2 2344445
Q ss_pred HHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeeecccccCccccccceEEEecHHHHHHHHc
Q 006709 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (634)
Q Consensus 170 ~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd 249 (634)
.....+..+|..+... .|.++|++.++ .+......+ ....+.....+.|+
T Consensus 74 ~mGmlaTvmNal~L~~--------aL~~~~~~~~v----~sai~~~~~------------------~e~~~~~~A~~~l~ 123 (238)
T COG0528 74 YMGMLATVMNALALQD--------ALERLGVDTRV----QSAIAMPQV------------------AEPYSRREAIRHLE 123 (238)
T ss_pred HHHHHHHHHHHHHHHH--------HHHhcCCccee----cccccCccc------------------cCccCHHHHHHHHH
Confidence 5545566677554443 47788887322 111111111 11234566677899
Q ss_pred CCcEEEEcCCccCCCCceeeechHHHHHHHHHHcCCCEEEEeec-cccc-------CCCCccccccCHHHHHHHHHhhch
Q 006709 250 GGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPIL-------DESGHLIRFLTLQEADSLIRQRVK 321 (634)
Q Consensus 250 ~G~IPVv~~v~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTD-Vdgl-------d~~gklI~~ls~~e~~~li~~~~~ 321 (634)
.|.|||.+.- . |.. .-.+|.+|++.|.+++||.|+..|+ |||+ ||+++.+++|+..|+.+..-+-
T Consensus 124 ~grVvIf~gG-t---g~P-~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~v-- 196 (238)
T COG0528 124 KGRVVIFGGG-T---GNP-GFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKV-- 196 (238)
T ss_pred cCCEEEEeCC-C---CCC-CCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCee--
Confidence 9999998751 1 121 2356999999999999999999995 9997 3679999999998876542100
Q ss_pred hhhhHHHHHHhhhhccccccCCCCCCcccccCCCCCccccchhccccCCcccCCCCCCcccccccccCcccccccccCCH
Q 006709 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (634)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~~~~~~~~~~GG~~~~~~~~~m~ 401 (634)
|-
T Consensus 197 ------------------------------------------------------------------------------mD 198 (238)
T COG0528 197 ------------------------------------------------------------------------------MD 198 (238)
T ss_pred ------------------------------------------------------------------------------ec
Confidence 11
Q ss_pred HHHHHHHHHHHcCCceEEEccCCcchhHHHHHHhhcCCccccc
Q 006709 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (634)
Q Consensus 402 ~Kl~AA~~a~~~Gv~rv~I~~g~~~~~ll~el~~~~g~GT~I~ 444 (634)
..|...+-+.+++ ++++|...+++ |..++.++..||.+.
T Consensus 199 --~tA~~l~~~~~i~-i~Vfn~~~~~~-l~~~~~ge~~gT~V~ 237 (238)
T COG0528 199 --PTAFSLARDNGIP-IIVFNINKPGN-LKRALKGEEVGTIVE 237 (238)
T ss_pred --HHHHHHHHHcCCc-EEEEeCCCCcc-HHHHHcCCCCceEec
Confidence 3455666678886 89999999998 667677889999875
No 71
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.54 E-value=5.2e-13 Score=147.51 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=142.8
Q ss_pred CeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHH-HHHHHHcC----------------------Cccc
Q 006709 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERG----------------------HEAK 155 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I-~~~l~~lg----------------------~~~~ 155 (634)
+++|.|+||+.+.+.+ +...++-++...+.|.+||+|.+++.-+ +.+++-.. ..+.
T Consensus 2 ~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~ 81 (447)
T COG0527 2 RLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPF 81 (447)
T ss_pred ceEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcch
Confidence 4799999999999866 8888888888778899999999987633 33322221 1110
Q ss_pred cc-----------------CCccCCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceee
Q 006709 156 YL-----------------GRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLA 218 (634)
Q Consensus 156 ~~-----------------~G~RvT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ 218 (634)
.. .-....++..+|.+...-.+++..|+++ .|++.|++ +..+++.+-.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~--------~L~~~Gv~----A~~~~~~~~~i~t 149 (447)
T COG0527 82 IAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAA--------ALNALGVD----ARSLDGRQAGIAT 149 (447)
T ss_pred hhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHH--------HHHhCCCc----eEEEchHHceeee
Confidence 00 0001124555666544444455666666 48999998 6666666554544
Q ss_pred eeecccccCccccccceEEEecHHH-HHHHHcCCcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeec
Q 006709 219 AKRKGVVDGVDYGATGEVKKVDVTR-MRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIID 293 (634)
Q Consensus 219 ak~~g~~~g~d~g~~G~v~~vd~~~-I~~LLd~G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTD 293 (634)
.. .++ ..++...+.+. +..+++.|.|||+.+. +.+.+|++..+ -+|..|+.||..|+||++.+.||
T Consensus 150 ~~--------~~~-~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TD 220 (447)
T COG0527 150 DS--------NHG-NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTD 220 (447)
T ss_pred cC--------ccc-ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEEC
Confidence 32 111 23344455566 8999999999999985 77788887755 68999999999999999999999
Q ss_pred cccc---C----CCCccccccCHHHHHHHHHhhc
Q 006709 294 GPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (634)
Q Consensus 294 Vdgl---d----~~gklI~~ls~~e~~~li~~~~ 320 (634)
|||+ | |++++|++|+.+|+.++..-|+
T Consensus 221 VdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GA 254 (447)
T COG0527 221 VDGVYTADPRIVPDARLLPEISYEEALELAYLGA 254 (447)
T ss_pred CCCCccCCCCCCCcceEcCccCHHHHHHHHHCCc
Confidence 9998 4 5799999999999999875544
No 72
>PTZ00330 acetyltransferase; Provisional
Probab=99.52 E-value=1.3e-13 Score=128.16 Aligned_cols=125 Identities=25% Similarity=0.365 Sum_probs=93.5
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhc------CcEEEEEECCeEEEEEEEeeec-----CCCeEEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------DSFYVVEREGQIIACAALFPFF-----KEKCGEVA 517 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l------~~~~V~~~~g~iiG~~~l~~~~-----~~~~~ei~ 517 (634)
..||+++++|++.+.+++..+...........+.+.+.. ..+++++.+|++||++.+.... ....++|.
T Consensus 7 ~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~ 86 (147)
T PTZ00330 7 LELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIE 86 (147)
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEE
Confidence 469999999999999998765433222111122222221 1345556789999999886321 11247899
Q ss_pred EEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeeccc
Q 006709 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 596 (634)
Q Consensus 518 ~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~ 596 (634)
.++|+|+|||+|+|++|+ .++++++++.++..+.+.+ ..+.+||+++||+.+..
T Consensus 87 ~~~V~~~~rg~Gig~~l~-------------------------~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 87 DVVVDPSYRGQGLGRALI-------------------------SDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACER 141 (147)
T ss_pred EEEECHHHcCCCHHHHHH-------------------------HHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEece
Confidence 999999999999999999 9999999999999988877 57899999999999876
Q ss_pred cc
Q 006709 597 EM 598 (634)
Q Consensus 597 ~~ 598 (634)
.|
T Consensus 142 ~~ 143 (147)
T PTZ00330 142 QM 143 (147)
T ss_pred EE
Confidence 54
No 73
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.51 E-value=2.9e-13 Score=131.12 Aligned_cols=126 Identities=28% Similarity=0.552 Sum_probs=102.3
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEE-ECCeEEEEEEEeeecCCCeEEEEEEEECCCCcC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRG 527 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~-~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rg 527 (634)
..+|+++++|.+.+.+++..+.............+.+....+++++ .++++||++.+.+. ....++|..++|+|+|||
T Consensus 6 i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~-~~~~~~i~~l~V~p~~rg 84 (169)
T PRK07922 6 ITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVM-WEDLAEIRTVAVDPAARG 84 (169)
T ss_pred ceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeec-CCCceEEEEEEECHHHhC
Confidence 4799999999999999988766544433334444445556788888 89999999988754 345688999999999999
Q ss_pred CCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecccccchh
Q 006709 528 QGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPE 601 (634)
Q Consensus 528 qGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~~~~~~ 601 (634)
+|+|++|| +++++.+++.|++.+++.+. +.+||+|+||+..+....+.
T Consensus 85 kGiG~~Ll-------------------------~~~~~~a~~~g~~~l~~~~~-~~~fY~k~GF~~~~~~~~~~ 132 (169)
T PRK07922 85 RGVGHAIV-------------------------ERLLDVARELGLSRVFVLTF-EVEFFARHGFVEIDGTPVTP 132 (169)
T ss_pred CCHHHHHH-------------------------HHHHHHHHHcCCCEEEEEec-cHHHHHHCCCEECccccCCh
Confidence 99999999 99999999999999988763 57899999999987655443
No 74
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.51 E-value=1.7e-13 Score=157.67 Aligned_cols=136 Identities=29% Similarity=0.556 Sum_probs=115.3
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgq 528 (634)
..||+++++|++.+.+++..+.......+++.+++......++|++.+|++|||+.+.+. ....++|..++|+|+||||
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~~~g~IVG~~~l~~~-~~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAEHHGEVTGCASLYIY-DSGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEEECCEEEEEEEEEEc-CCCeEEEEEEEECHHHcCC
Confidence 469999999999999998776555444556777777777889999999999999998753 3456899999999999999
Q ss_pred CHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecccccchhHhhhhcc
Q 006709 529 GQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRIN 608 (634)
Q Consensus 529 GiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~ 608 (634)
|||++|| +++++++++.|++.+++.+ .+..||+|+||+.++..++|+.....-.
T Consensus 543 GIGk~Ll-------------------------~~l~~~ak~~g~~~i~l~~-~a~~FYek~GF~~~~~~~~~~~~~~~~~ 596 (614)
T PRK12308 543 GQGSALV-------------------------QYLVEKARQMAIKKVFVLT-RVPEFFMKQGFSPTSKSLLPEKVLKDCD 596 (614)
T ss_pred CHHHHHH-------------------------HHHHHHHHHCCCCEEEEee-CcHHHHHHCCCEECCcccCChHHHHhhc
Confidence 9999999 9999999999999998876 4679999999999999999987766555
Q ss_pred CCC
Q 006709 609 LSR 611 (634)
Q Consensus 609 ~~~ 611 (634)
+.+
T Consensus 597 ~~~ 599 (614)
T PRK12308 597 QCP 599 (614)
T ss_pred cCC
Confidence 443
No 75
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.47 E-value=3.7e-12 Score=134.14 Aligned_cols=200 Identities=19% Similarity=0.187 Sum_probs=120.6
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCc------cc------------------
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHE------AK------------------ 155 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~------~~------------------ 155 (634)
++|.|+||+.+.+.+ ++++++-|..-.+.+.++|+|.++-..++..|.++-.. ..
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~ 80 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEV 80 (295)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 368999999998866 67777766543345677888877643333322111000 00
Q ss_pred ---------------ccCCc---cCCCHHHHHHHHHHHhHH-HHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCce
Q 006709 156 ---------------YLGRY---RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNF 216 (634)
Q Consensus 156 ---------------~~~G~---RvT~~~~l~~~~~a~G~i-n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~ 216 (634)
...+. ...++...+.+. +.|+. ...|++. .|++.|++ +..+.+.+ +
T Consensus 81 ~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~-s~GE~lSa~lla~--------~L~~~Gi~----a~~ld~~~--~ 145 (295)
T cd04259 81 DADALLANDLAQLQRWLTGISLLKQASPRTRAEVL-ALGELMSTRLGAA--------YLEAQGLK----VKWLDARE--L 145 (295)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHH-HHHHHHHHHHHHH--------HHHhCCCC----eEEEcHHH--h
Confidence 00000 011233333333 34443 4555555 48899998 55554433 2
Q ss_pred eeeee-cccccCccccccceE-EEecHHHHHHHHcC-CcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEEE
Q 006709 217 LAAKR-KGVVDGVDYGATGEV-KKVDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLI 289 (634)
Q Consensus 217 l~ak~-~g~~~g~d~g~~G~v-~~vd~~~I~~LLd~-G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI 289 (634)
+.... .+.- ..+|+ ...+ .......|.+.++. +.|||+.+. +.+..|++..+ ++|.+|+.+|.+|+||.|+
T Consensus 146 i~~~~~~~~~-~~~~~-~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~ 223 (295)
T cd04259 146 LTATPTLGGE-TMNYL-SARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCE 223 (295)
T ss_pred eeeccccccc-ccccc-cceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEE
Confidence 22111 0000 00111 1111 11234567766665 679999986 77788887654 8999999999999999999
Q ss_pred Eeeccccc---C----CCCccccccCHHHHHHHHH
Q 006709 290 CIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 290 ~LTDVdgl---d----~~gklI~~ls~~e~~~li~ 317 (634)
++|||+|+ | +++++|++++.+|+.++..
T Consensus 224 i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~ 258 (295)
T cd04259 224 IWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIAT 258 (295)
T ss_pred EEECCCccccCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 99999997 3 3689999999999988864
No 76
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.45 E-value=1.4e-12 Score=135.25 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=97.8
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccC-CHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~-~~~~~~~~l---~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~ 524 (634)
..||+++++|++.+.+|+....... ..+. ..+.+.+.+ ..+++++.+|++||++.+........++|..++|+|+
T Consensus 116 ~~IR~a~~~D~~~l~~L~~~v~~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~ 194 (266)
T TIGR03827 116 FTLRIATEDDADAMAALYRKVFPTY-PFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPE 194 (266)
T ss_pred eEEEECCHHHHHHHHHHHHHHhccC-CCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHH
Confidence 4699999999999999987754322 2122 233344443 2577888999999999875444456789999999999
Q ss_pred CcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 525 CRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 525 ~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
|||||+|++|| +.+++++++.|+..+++.+ .++..+|+++||+.++.
T Consensus 195 yRG~GiG~~Ll-------------------------~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 195 YRGKGLAKILL-------------------------AAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred HcCCCHHHHHH-------------------------HHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 99999999999 9999999999999998877 35788999999999886
No 77
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.42 E-value=7.7e-12 Score=131.73 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=120.9
Q ss_pred EEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCccccc-------------------CCc-
Q 006709 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYL-------------------GRY- 160 (634)
Q Consensus 102 iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~~-------------------~G~- 160 (634)
.|.|+||+.+.+.+ +..+++-|.... .+.++|+|.++-..++..|.++....... +.+
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~iI~~~~-~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~l~ 80 (294)
T cd04257 2 KVLKFGGTSLANAERIRRVADIILNAA-KQEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKHLDLITELL 80 (294)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Confidence 59999999998865 777777666443 46788888887555554443321100000 000
Q ss_pred -----------------------------cCCCHHHHHHHHHHHhH-HHHHHHHhcCCCCchhhHHhcCCCCcceeEEee
Q 006709 161 -----------------------------RITDSESLAAAMEAAGG-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVS 210 (634)
Q Consensus 161 -----------------------------RvT~~~~l~~~~~a~G~-in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~ 210 (634)
+-.++...+.+ .+.|+ +...|++. .|++.|++ +..++
T Consensus 81 ~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i-ls~GE~lSa~lla~--------~L~~~Gi~----a~~ld 147 (294)
T cd04257 81 SGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKV-LSFGERLSARLLSA--------LLNQQGLD----AAWID 147 (294)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhh-eeHHHHHHHHHHHH--------HHHhCCCC----eEEEc
Confidence 00011112222 22333 33445554 48889988 66666
Q ss_pred ccCCceeeeeecccccCccccccceEEE-ecHHHHHHHHcC-CcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcC
Q 006709 211 VASGNFLAAKRKGVVDGVDYGATGEVKK-VDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIE 284 (634)
Q Consensus 211 ~~dg~~l~ak~~g~~~g~d~g~~G~v~~-vd~~~I~~LLd~-G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~ 284 (634)
+.+. +.+.. +++. ..+.. ...+.++.+++. +.|||+.+. +.+..|++..+ .+|.+|+.+|..|+
T Consensus 148 ~~~~-i~t~~--------~~~~-a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~ 217 (294)
T cd04257 148 AREL-IVTDG--------GYLN-AVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLD 217 (294)
T ss_pred hHHe-eEecC--------CCCc-eEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhC
Confidence 6552 33211 1221 12211 224677777776 899999986 66677887654 58999999999999
Q ss_pred CCEEEEeeccccc---C----CCCccccccCHHHHHHHHH
Q 006709 285 ADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 285 AdkLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~ 317 (634)
||.++++|||||+ | +++++|+.|+.+|+.++..
T Consensus 218 a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~ 257 (294)
T cd04257 218 ADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSY 257 (294)
T ss_pred CCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHh
Confidence 9999999999997 3 4689999999999888754
No 78
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.41 E-value=9.5e-13 Score=119.59 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=87.8
Q ss_pred ccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhc--CcEEEEEECCeEEEEEEEeeec----C--CCeEEEEEEEE
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--DSFYVVEREGQIIACAALFPFF----K--EKCGEVAAIGV 521 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l--~~~~V~~~~g~iiG~~~l~~~~----~--~~~~ei~~l~V 521 (634)
+||+++++|++++.+|+...........+........+ ..+++++++++|||++.+.|.. + -..+.+..++|
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 48999999999999998655543332210111222222 5789999999999999998752 1 13588999999
Q ss_pred CCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeec
Q 006709 522 SPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFREC 594 (634)
Q Consensus 522 ~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~ 594 (634)
+|+|||||+|++|+ +.+.+.+++.|+..+++.. ...+||+++||+.+
T Consensus 81 ~p~~R~~Gl~~~L~-------------------------~~~~~~~~~~g~~~~~l~~-~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLM-------------------------RALLERARERGVPFIFLFP-SSPPFYRRFGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHH-------------------------HHHHHHHHHTT-SEEEEE--SSHHHHHHTTEEEE
T ss_pred CHHHcCCCHHHHHH-------------------------HHHHHHHHhCCCCEEEEec-CChhhhhcCCCEEC
Confidence 99999999999999 9999999999999888776 45889999999863
No 79
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.40 E-value=1.2e-11 Score=131.85 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=65.9
Q ss_pred EecHHHHHHHHcCCcEEEEcCCccCCCCceeee---chHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccc
Q 006709 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 307 (634)
Q Consensus 238 ~vd~~~I~~LLd~G~IPVv~~v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgld-------~~gklI~~l 307 (634)
..+.+.+..+++.|.|||+++...+.+|...++ ++|.+|+.+|.+|+||.++++|||||+. +++++|+++
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 446788899999999999998655667776654 7999999999999999999999999972 357899999
Q ss_pred CHHHHHHH
Q 006709 308 TLQEADSL 315 (634)
Q Consensus 308 s~~e~~~l 315 (634)
+.+|+.++
T Consensus 224 sy~Ea~el 231 (327)
T TIGR02078 224 SYEEIKIA 231 (327)
T ss_pred CHHHHHHH
Confidence 99887654
No 80
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.40 E-value=1e-11 Score=130.65 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=66.7
Q ss_pred HHHHHHHHcC-CcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccC
Q 006709 241 VTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLT 308 (634)
Q Consensus 241 ~~~I~~LLd~-G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgl---d----~~gklI~~ls 308 (634)
.+.++.+++. +.|||+.+. +.+..|++..+ ++|.+|+.+|..|+||+++++|||||+ | +++++|++++
T Consensus 168 ~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls 247 (293)
T cd04243 168 KERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELS 247 (293)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeC
Confidence 3578888887 899999985 66778888765 589999999999999999999999997 3 4689999999
Q ss_pred HHHHHHHHHh
Q 006709 309 LQEADSLIRQ 318 (634)
Q Consensus 309 ~~e~~~li~~ 318 (634)
.+|+.++...
T Consensus 248 ~~ea~~l~~~ 257 (293)
T cd04243 248 YDEAMELAYF 257 (293)
T ss_pred HHHHHHHHhC
Confidence 9999888654
No 81
>PHA00673 acetyltransferase domain containing protein
Probab=99.39 E-value=4.5e-12 Score=120.99 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=90.8
Q ss_pred ccCccchHHHHHHhHHHHHHccc---C-ccCCHHHHHhhc-----CcEEEEEECCeEEEEEEEeeecC-----CCeEEEE
Q 006709 452 RTAKVTDLSGIKQIIQPLVESGA---L-VRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFK-----EKCGEVA 517 (634)
Q Consensus 452 R~a~~~D~~~i~~l~~~~~~~~~---~-~~~~~~~~~~~l-----~~~~V~~~~g~iiG~~~l~~~~~-----~~~~ei~ 517 (634)
--|+.+|++.|.+|+........ . .+.+.....+.+ ..++|++++|++|||+.+...+. ...+.|.
T Consensus 10 ~~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 10 AFAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred hhccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 34789999999999765211111 0 111111111222 37889999999999998864332 2457899
Q ss_pred EEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecH---HhHHHHHhCCCeec
Q 006709 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTT---RTADWFKSRGFREC 594 (634)
Q Consensus 518 ~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~---~a~~~Y~k~GF~~~ 594 (634)
.++|+|++||||||++|+ ++++++|++.|+..+++..| ++.+||.++|+++.
T Consensus 90 ~l~V~~~~RGqGIG~~Ll-------------------------~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~ 144 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALL-------------------------RATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRET 144 (154)
T ss_pred EEEEChhccCCCHHHHHH-------------------------HHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhh
Confidence 999999999999999999 99999999999999999985 48999999999987
Q ss_pred cc
Q 006709 595 SI 596 (634)
Q Consensus 595 ~~ 596 (634)
..
T Consensus 145 ~~ 146 (154)
T PHA00673 145 NR 146 (154)
T ss_pred ch
Confidence 54
No 82
>PRK03624 putative acetyltransferase; Provisional
Probab=99.38 E-value=4.4e-12 Score=115.43 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=91.0
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCC--HHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRT--DEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 522 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~--~~~~~~~l----~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~ 522 (634)
..+|+++++|++.+.+++... ....++. ...+...+ ..++++..++++||++.+.. ......+..++|+
T Consensus 3 ~~ir~~~~~d~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~--~~~~~~i~~i~v~ 77 (140)
T PRK03624 3 MEIRVFRQADFEAVIALWERC---DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGY--DGHRGWAYYLAVH 77 (140)
T ss_pred eEEEEcccccHHHHHHHHHhc---CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeec--cCCCceEEEEEEC
Confidence 358999999999999997654 2222221 11222222 25788888999999998763 2244677789999
Q ss_pred CCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeecccc
Q 006709 523 PECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 597 (634)
Q Consensus 523 p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~~ 597 (634)
|+|||||+|++|| .++++.+++.+++.+.+.+ ..+.+||+++||+..+..
T Consensus 78 p~~rg~Gig~~ll-------------------------~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 78 PDFRGRGIGRALV-------------------------ARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred HHHhCCCHHHHHH-------------------------HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 9999999999999 8889999999999998877 468999999999986653
No 83
>PRK09831 putative acyltransferase; Provisional
Probab=99.37 E-value=5.9e-12 Score=118.31 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=85.2
Q ss_pred ccccCccchHHHHHHhHHHHHHcccCccCCHHHH-----------Hhhc--CcEEEEEECCeEEEEEEEeeecCCCeEEE
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEEL-----------LKAL--DSFYVVEREGQIIACAALFPFFKEKCGEV 516 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~-----------~~~l--~~~~V~~~~g~iiG~~~l~~~~~~~~~ei 516 (634)
.||+++++|++.+.+++...+........+.+++ .+.+ ..++|++.+|+++|++.+.. .++
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~------~~i 75 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE------HYI 75 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh------cee
Confidence 5899999999999999887665433322233222 2222 36888999999999988862 357
Q ss_pred EEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeeccc
Q 006709 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 596 (634)
Q Consensus 517 ~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~ 596 (634)
..++|+|+|||||+|++|| +++++.+.++ .+.. ...+.+||+++||+.++.
T Consensus 76 ~~~~v~p~~~g~GiG~~Ll-------------------------~~~~~~~~~l---~v~~-~~~a~~~Y~k~Gf~~~g~ 126 (147)
T PRK09831 76 DMLFVDPEYTRRGVASALL-------------------------KPLIKSESEL---TVDA-SITAKPFFERYGFQTVKQ 126 (147)
T ss_pred eeEEECHHHcCCCHHHHHH-------------------------HHHHHHhhhe---Eeec-chhhHHHHHHCCCEEeec
Confidence 7899999999999999999 7777777552 2222 257899999999999887
Q ss_pred cc
Q 006709 597 EM 598 (634)
Q Consensus 597 ~~ 598 (634)
..
T Consensus 127 ~~ 128 (147)
T PRK09831 127 QR 128 (147)
T ss_pred cc
Confidence 54
No 84
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.37 E-value=1e-11 Score=110.63 Aligned_cols=103 Identities=31% Similarity=0.495 Sum_probs=81.0
Q ss_pred hHHHHHHhHHHHHHcccCc---------cCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCC
Q 006709 458 DLSGIKQIIQPLVESGALV---------RRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (634)
Q Consensus 458 D~~~i~~l~~~~~~~~~~~---------~~~~~~~~~~l----~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~ 524 (634)
|+++|.+|+...+...... ..+.+.+.+.+ ..++|++.++++||++.+. +..+|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-----~~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-----PDGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-----TCEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-----CCCeEEEEEEChh
Confidence 7889999988766553321 13455555554 2689999999999999986 3445999999999
Q ss_pred CcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCC
Q 006709 525 CRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGF 591 (634)
Q Consensus 525 ~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF 591 (634)
|||+|+|++|+ +++++.+++ |++.+.+.. ..+..||+++||
T Consensus 76 ~r~~Gig~~Ll-------------------------~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALL-------------------------DAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHH-------------------------HHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHH-------------------------HHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 99999999999 999999877 999888887 579999999998
No 85
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.35 E-value=8.5e-11 Score=123.41 Aligned_cols=192 Identities=15% Similarity=0.132 Sum_probs=125.2
Q ss_pred EEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchH-------HHHHHHHHc-CCcc------ccc---------
Q 006709 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHV-------QIDKLLSER-GHEA------KYL--------- 157 (634)
Q Consensus 102 iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~-------~I~~~l~~l-g~~~------~~~--------- 157 (634)
.|.|+||+.+.+.+ ++.+++-|. ..+.++|+|.++-. -+...|.++ .... ...
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~ii~---~~~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~~~~~~~~~~i~~~h~~ 78 (288)
T cd04245 2 KVVKFGGSSLASAEQFQKVKAIVK---ADPERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAGEDTESIFEAIVDRYAE 78 (288)
T ss_pred EEEEECcCccCCHHHHHHHHHHHH---hcCCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 58999999998865 666666554 23567888888743 244333211 0000 000
Q ss_pred -----------------------CCccCCCHHHHHHHHHHHhHH-HHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccC
Q 006709 158 -----------------------GRYRITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVAS 213 (634)
Q Consensus 158 -----------------------~G~RvT~~~~l~~~~~a~G~i-n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~d 213 (634)
......++...+.+ .+.|+. +..+++. .|++.|++ +..+++.+
T Consensus 79 ~~~~L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~d~i-~s~GE~lSa~ll~~--------~L~~~Gi~----a~~ld~~~ 145 (288)
T cd04245 79 IADELGLPMSILEEIAEILENLANLDYANPDYLLDAL-KARGEYLNAQLMAA--------YLNYQGID----ARYVIPKD 145 (288)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhccCCHHHHHHH-HHHhHHHHHHHHHH--------HHHHCCCC----eEEEcHHH
Confidence 00000122233333 334443 4555555 48889988 55665554
Q ss_pred CceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEEE
Q 006709 214 GNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLI 289 (634)
Q Consensus 214 g~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI 289 (634)
-.+++.. .++. ..+.....+.+.++++.+.|||+.+. +.+.+|++..+ .+|..|+.+|.+|+||.+.
T Consensus 146 ~~i~t~~--------~~~~-a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~ 216 (288)
T cd04245 146 AGLVVTD--------EPGN-AQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYE 216 (288)
T ss_pred CceeecC--------Cccc-cccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEE
Confidence 4344322 1211 12223356788888899999999985 77788999888 8999999999999999999
Q ss_pred Eeeccccc---C----CCCccccccCHHHHHHHHHh
Q 006709 290 CIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 290 ~LTDVdgl---d----~~gklI~~ls~~e~~~li~~ 318 (634)
+.|||||+ | ++++.|++|+.+|+.++...
T Consensus 217 i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~ 252 (288)
T cd04245 217 NFTDVDGIYAANPRIVANPKPISEMTYREMRELSYA 252 (288)
T ss_pred EEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHC
Confidence 99999997 3 57899999999999988643
No 86
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.34 E-value=1e-11 Score=116.50 Aligned_cols=123 Identities=22% Similarity=0.305 Sum_probs=100.1
Q ss_pred cccccCccchHHHHHHhHHHHHHccc---CccCCHHHHHhh--c----CcEEEEEE---CCeEEEEEEEeeecC----CC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGA---LVRRTDEELLKA--L----DSFYVVER---EGQIIACAALFPFFK----EK 512 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~---~~~~~~~~~~~~--l----~~~~V~~~---~g~iiG~~~l~~~~~----~~ 512 (634)
..||.++++|.+.+.+++.++.+-.- .+..+.+.+... + .+++|+.. ++.++|++.+++... ..
T Consensus 4 ~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~ 83 (163)
T KOG3216|consen 4 IRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQ 83 (163)
T ss_pred eEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccccc
Confidence 46999999999999999987765332 234466666664 2 25666665 789999999876543 24
Q ss_pred eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHh
Q 006709 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKS 588 (634)
Q Consensus 513 ~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k 588 (634)
..+|..|+|.|+|||+|+|++|+ +.+-+.|..+|+.++.+.+ .+|+.||++
T Consensus 84 ~iYleDlyV~e~yR~kG~Gs~Ll-------------------------~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k 138 (163)
T KOG3216|consen 84 GIYLEDLYVREQYRGKGIGSKLL-------------------------KFVAEEADKLGTPRVEWVVLDWNHRAILLYEK 138 (163)
T ss_pred eEEEEeeEecchhcccChHHHHH-------------------------HHHHHHHHHcCCCcEEEEEeccchhHHHHHHH
Confidence 57999999999999999999999 9999999999999999988 589999999
Q ss_pred CCCeeccc
Q 006709 589 RGFRECSI 596 (634)
Q Consensus 589 ~GF~~~~~ 596 (634)
.|++....
T Consensus 139 ~gaq~l~~ 146 (163)
T KOG3216|consen 139 VGAQDLKE 146 (163)
T ss_pred hCccccce
Confidence 99987543
No 87
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.33 E-value=1.2e-11 Score=103.74 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=68.9
Q ss_pred EEECCeEEEEEEEeeecCC----CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH
Q 006709 493 VEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA 568 (634)
Q Consensus 493 ~~~~g~iiG~~~l~~~~~~----~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 568 (634)
++.+|+|||++.+.+.... ...+|..++|+|+|||+|+|++|+ +++++.++
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~-------------------------~~~~~~~~ 55 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLL-------------------------QAAEEWAR 55 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHH-------------------------HHHHHHHH
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhh-------------------------hhhhhhHH
Confidence 5789999999999877654 689999999999999999999999 99999999
Q ss_pred HcCCcEEEEec----HHhHHHHHhCCCe
Q 006709 569 SLGLDMLFLLT----TRTADWFKSRGFR 592 (634)
Q Consensus 569 ~~g~~~l~l~t----~~a~~~Y~k~GF~ 592 (634)
+.|++.+.+.+ +.+.+||+++||+
T Consensus 56 ~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 56 KRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp HTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred hcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 99999999988 4689999999996
No 88
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.33 E-value=7.2e-12 Score=117.38 Aligned_cols=122 Identities=25% Similarity=0.397 Sum_probs=90.3
Q ss_pred cccccCccchHH-HHHHhHHHHHHcccCccCCHHHHHhhc----C-----cEEEEEE--CCeEEEEEEEeeec-----CC
Q 006709 449 EGTRTAKVTDLS-GIKQIIQPLVESGALVRRTDEELLKAL----D-----SFYVVER--EGQIIACAALFPFF-----KE 511 (634)
Q Consensus 449 e~iR~a~~~D~~-~i~~l~~~~~~~~~~~~~~~~~~~~~l----~-----~~~V~~~--~g~iiG~~~l~~~~-----~~ 511 (634)
..||+++++|++ .+..++..+... .+++.+.+.+.+ . .+++++. ++++||++.+.+.. ..
T Consensus 7 ~~ir~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (150)
T PLN02706 7 FKVRRLEISDKSKGFLELLQQLTVV---GDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCG 83 (150)
T ss_pred eEEeEhhhcccchHHHHHHHhccCC---CCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCC
Confidence 359999999998 488776543221 234544444433 1 2455665 68999999885221 12
Q ss_pred CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCC
Q 006709 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRG 590 (634)
Q Consensus 512 ~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~G 590 (634)
..++|..++|+|+|||||+|++|+ +.++++|+++|+..|.+.+ .....||+++|
T Consensus 84 ~~~~i~~i~V~~~~rg~GiG~~ll-------------------------~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~G 138 (150)
T PLN02706 84 KVGHIEDVVVDSAARGKGLGKKII-------------------------EALTEHARSAGCYKVILDCSEENKAFYEKCG 138 (150)
T ss_pred cEEEEEEEEECHHHcCCCHHHHHH-------------------------HHHHHHHHHcCCCEEEEEeccccHHHHHHCc
Confidence 346777899999999999999999 9999999999999999988 33457999999
Q ss_pred Ceeccccc
Q 006709 591 FRECSIEM 598 (634)
Q Consensus 591 F~~~~~~~ 598 (634)
|+..+..|
T Consensus 139 F~~~g~~~ 146 (150)
T PLN02706 139 YVRKEIQM 146 (150)
T ss_pred CEEehhhe
Confidence 99987655
No 89
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.31 E-value=2.2e-11 Score=119.78 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=91.8
Q ss_pred cccccCccchHHHHHHhHHHHHHcc-cCccC-CHH---H-HH----hhc----Cc--EEEEEECCeEEEEEEEeeecCCC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESG-ALVRR-TDE---E-LL----KAL----DS--FYVVEREGQIIACAALFPFFKEK 512 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~-~~~~~-~~~---~-~~----~~l----~~--~~V~~~~g~iiG~~~l~~~~~~~ 512 (634)
..||+++++|++.+.+++....... ...++ +.+ . +. ..+ .. +++++.+|++||++.+.... ..
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~-~~ 122 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN-DT 122 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC-CC
Confidence 4799999999999999987654321 11111 111 1 11 111 12 23445678999999997553 34
Q ss_pred eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHh
Q 006709 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKS 588 (634)
Q Consensus 513 ~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k 588 (634)
.++|..++|+|+|||||+|++|+ +.++++++++|+..|.+.+ ..+.+||+|
T Consensus 123 ~~~i~~l~V~p~~rGkG~G~~ll-------------------------~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k 177 (191)
T TIGR02382 123 DARIGLLAVFPGAQSRGIGAELM-------------------------QTALNWCYARGLTRLRVATQMGNTAALRLYIR 177 (191)
T ss_pred ceEEEEEEECHHHcCCCHHHHHH-------------------------HHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH
Confidence 57898999999999999999999 9999999999999999987 479999999
Q ss_pred CCCeeccc
Q 006709 589 RGFRECSI 596 (634)
Q Consensus 589 ~GF~~~~~ 596 (634)
+||+..+.
T Consensus 178 lGF~~~~~ 185 (191)
T TIGR02382 178 SGANIEST 185 (191)
T ss_pred cCCccccc
Confidence 99998764
No 90
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.31 E-value=3.2e-11 Score=112.65 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=91.1
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcC-c--EEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCC
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALD-S--FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC 525 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~-~--~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~ 525 (634)
..||+++.+|++.+.++... ....+++.+.+..... . .++++.++++||++.+.+.. ...++..++|+|+|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~ 75 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQR----AHAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDY 75 (146)
T ss_pred cchhcCChhhhHHHHHHHHh----cCCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHH
Confidence 46999999999999998532 2223455555544332 2 23456789999999887543 34567789999999
Q ss_pred cCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 526 RGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 526 rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
||+|+|+.|+ +.+++.+++.++..+++.+ .++.+||++.||+..+.
T Consensus 76 rg~G~g~~ll-------------------------~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~ 125 (146)
T PRK09491 76 QRQGLGRALL-------------------------EHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTI 125 (146)
T ss_pred ccCCHHHHHH-------------------------HHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeee
Confidence 9999999999 8888999899999999876 46899999999998764
No 91
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=3.7e-11 Score=116.39 Aligned_cols=123 Identities=28% Similarity=0.339 Sum_probs=101.3
Q ss_pred cccccCccchHHHHHHhHHHHHHcccC----ccCCHHHHHhhc----C---cEEEEEEC-CeEEEEEEEeeecCCC----
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGAL----VRRTDEELLKAL----D---SFYVVERE-GQIIACAALFPFFKEK---- 512 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~----~~~~~~~~~~~l----~---~~~V~~~~-g~iiG~~~l~~~~~~~---- 512 (634)
+.||+++..|++.|..|++..++++.. .+.+.+.+.+.. . +++|++.+ |+++|++.+.+|....
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 468999999999999999999988764 344666666544 1 56777665 9999999999886543
Q ss_pred eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHh
Q 006709 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKS 588 (634)
Q Consensus 513 ~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k 588 (634)
.+|. +++|+|++||+|+|++|| +.+.+.+..+|+..+.... ..+..++++
T Consensus 82 tve~-SiYv~~~~~g~GiG~~Ll-------------------------~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~ 135 (169)
T COG1247 82 TVEL-SIYLDPAARGKGLGKKLL-------------------------QALITEARALGVRELVAGIESDNLASIALHEK 135 (169)
T ss_pred EEEE-EEEECcccccccHHHHHH-------------------------HHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHH
Confidence 2555 999999999999999999 8999999999998877766 358899999
Q ss_pred CCCeecccc
Q 006709 589 RGFRECSIE 597 (634)
Q Consensus 589 ~GF~~~~~~ 597 (634)
+||++++..
T Consensus 136 ~GF~~~G~~ 144 (169)
T COG1247 136 LGFEEVGTF 144 (169)
T ss_pred CCCEEeccc
Confidence 999999863
No 92
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.29 E-value=3e-11 Score=115.43 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=87.0
Q ss_pred cccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhc-CcEEEEE-ECCeEEEEEEEeeec-CCCeEEEEEEEECCCCcC
Q 006709 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DSFYVVE-REGQIIACAALFPFF-KEKCGEVAAIGVSPECRG 527 (634)
Q Consensus 451 iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l-~~~~V~~-~~g~iiG~~~l~~~~-~~~~~ei~~l~V~p~~rg 527 (634)
||+++.+|++.|.+|+................+.+.. ..+++++ .++++||++.+.+.. .....++..++|+|+|||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 7999999999999997643111110001111122222 3466777 468999998765332 234578889999999999
Q ss_pred CCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeec
Q 006709 528 QGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFREC 594 (634)
Q Consensus 528 qGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~ 594 (634)
||+|++|+ +.+++++++.++..+.+.+ +.+++||+|+||+..
T Consensus 81 ~GiG~~L~-------------------------~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~ 126 (157)
T TIGR02406 81 KGLARRLL-------------------------EALLERVACERVRHLETTITPDNQASRALFKALARRRG 126 (157)
T ss_pred CcHHHHHH-------------------------HHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccC
Confidence 99999999 8888999899999998877 578999999999873
No 93
>PRK09084 aspartate kinase III; Validated
Probab=99.29 E-value=6.9e-11 Score=131.39 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=121.8
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCccc----c-------------------
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK----Y------------------- 156 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~----~------------------- 156 (634)
++|.|+||+.+.+.+ ++.+++-|.. .+.++|+|.++-..++..|.++..... +
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~l~ 77 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQYAILDRLG 77 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999865 6666665543 577888888885445444332210000 0
Q ss_pred -------------------cCCcc-CCCHHHHHHHHHHHhH-HHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCc
Q 006709 157 -------------------LGRYR-ITDSESLAAAMEAAGG-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGN 215 (634)
Q Consensus 157 -------------------~~G~R-vT~~~~l~~~~~a~G~-in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~ 215 (634)
..+.. ..++...+.+ .+.|+ +...+++. .|++.|++ +..+++.+-
T Consensus 78 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~i-~s~GE~lSa~l~~~--------~L~~~Gi~----a~~l~~~~~- 143 (448)
T PRK09084 78 DPNVVREEIERLLENITVLAEAASLATSPALTDEL-VSHGELMSTLLFVE--------LLRERGVQ----AEWFDVRKV- 143 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhhh-hhHHHHHHHHHHHH--------HHHhCCCC----cEEEchHHe-
Confidence 00000 0122233333 23443 34555555 48899998 566655442
Q ss_pred eeeeeecccccCccccccceE-----EEecHHHHHHHHcCCcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCC
Q 006709 216 FLAAKRKGVVDGVDYGATGEV-----KKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEAD 286 (634)
Q Consensus 216 ~l~ak~~g~~~g~d~g~~G~v-----~~vd~~~I~~LLd~G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~Ad 286 (634)
+++.. +|+. .++ .....+.+..+++.+ |||+.+. +.+..|++..+ .+|..|+.+|..|+||
T Consensus 144 i~t~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~ 213 (448)
T PRK09084 144 MRTDD--------RFGR-AEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNAS 213 (448)
T ss_pred EEecC--------CCCc-ccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCC
Confidence 33311 1221 111 111124566677888 9999985 67788887765 8999999999999999
Q ss_pred EEEEeeccccc---C----CCCccccccCHHHHHHHHHh
Q 006709 287 KLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 287 kLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~~ 318 (634)
.+++.|||||+ | |++++|++++.+|+.++...
T Consensus 214 ~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~ 252 (448)
T PRK09084 214 RVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATF 252 (448)
T ss_pred EEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhC
Confidence 99999999997 3 46899999999999888643
No 94
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.29 E-value=6.2e-11 Score=111.20 Aligned_cols=120 Identities=27% Similarity=0.423 Sum_probs=89.3
Q ss_pred cccCccchHHHHHHhHHHHHHcccCcc----CCHHHHHhhc--------CcEEEEEE-CCeEEEEEEEeeecCC-CeEEE
Q 006709 451 TRTAKVTDLSGIKQIIQPLVESGALVR----RTDEELLKAL--------DSFYVVER-EGQIIACAALFPFFKE-KCGEV 516 (634)
Q Consensus 451 iR~a~~~D~~~i~~l~~~~~~~~~~~~----~~~~~~~~~l--------~~~~V~~~-~g~iiG~~~l~~~~~~-~~~ei 516 (634)
||+++++|++.|.+++........... .+.+.+.+.+ ..++++.. +|++||++.+.+.... ..+++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 699999999999999976443333211 1222222222 24555555 9999999999876543 45666
Q ss_pred EEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHH-HHcCCcEEEEec----HHhHHHHHhCCC
Q 006709 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGF 591 (634)
Q Consensus 517 ~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a-~~~g~~~l~l~t----~~a~~~Y~k~GF 591 (634)
+++|.|+||++|+|+.|+ +.+++.| ++.|++.|++.+ ..+..||+++||
T Consensus 81 -~~~v~~~~~~~gig~~l~-------------------------~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF 134 (155)
T PF13420_consen 81 -SIYVSPDYRGKGIGRKLL-------------------------DELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGF 134 (155)
T ss_dssp -EEEEEGGGTTSSHHHHHH-------------------------HHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTE
T ss_pred -eeEEChhHCCCcHHHHHH-------------------------HHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCC
Confidence 689999999999999999 9999999 999999999988 579999999999
Q ss_pred eeccc
Q 006709 592 RECSI 596 (634)
Q Consensus 592 ~~~~~ 596 (634)
+..+.
T Consensus 135 ~~~g~ 139 (155)
T PF13420_consen 135 EEEGE 139 (155)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 95
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.29 E-value=4.6e-11 Score=117.63 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=93.4
Q ss_pred ccccccCccchHHHHHHhHHHHHH-cccCccC-CHH-------HHHhh-c----C-cEEEEE-ECCeEEEEEEEeeecCC
Q 006709 448 YEGTRTAKVTDLSGIKQIIQPLVE-SGALVRR-TDE-------ELLKA-L----D-SFYVVE-REGQIIACAALFPFFKE 511 (634)
Q Consensus 448 Ye~iR~a~~~D~~~i~~l~~~~~~-~~~~~~~-~~~-------~~~~~-l----~-~~~V~~-~~g~iiG~~~l~~~~~~ 511 (634)
-..||+++++|++.+.+++..... ..+..++ +.+ ++... . . .++|+. .++++||++.+... ..
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~-~~ 124 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLREL-ND 124 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEec-CC
Confidence 367999999999999999876533 2222111 111 11111 1 1 355555 46899999998754 33
Q ss_pred CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHH
Q 006709 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFK 587 (634)
Q Consensus 512 ~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~ 587 (634)
..++|..++|+|+|||||+|++|+ ..+++++++.|++.+.+.+ +++.+||+
T Consensus 125 ~~~~i~~~~V~p~~rg~Gig~~Ll-------------------------~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye 179 (194)
T PRK10975 125 TDARIGLLAVFPGAQGRGIGARLM-------------------------QAALNWCQARGLTRLRVATQMGNLAALRLYI 179 (194)
T ss_pred CceEEEEEEEChhhcCCCHHHHHH-------------------------HHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH
Confidence 458898899999999999999999 8999999999999999887 47899999
Q ss_pred hCCCeeccccc
Q 006709 588 SRGFRECSIEM 598 (634)
Q Consensus 588 k~GF~~~~~~~ 598 (634)
|+||+..++.+
T Consensus 180 k~Gf~~~~~~~ 190 (194)
T PRK10975 180 RSGANIESTAY 190 (194)
T ss_pred HCCCeEeEEEe
Confidence 99999977643
No 96
>PRK05925 aspartate kinase; Provisional
Probab=99.28 E-value=6.1e-11 Score=131.31 Aligned_cols=192 Identities=16% Similarity=0.088 Sum_probs=116.7
Q ss_pred CCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHc-CCccc------------c---cCCc-
Q 006709 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSER-GHEAK------------Y---LGRY- 160 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~l-g~~~~------------~---~~G~- 160 (634)
+.++|.|+||+.+.+.+ +.++++-|.. ..++|+|.++-..++..|.++ ..... + ....
T Consensus 1 ~~~~V~KFGGtSv~~~e~i~~v~~ii~~----~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~i~~~~~~~~~~l~ 76 (440)
T PRK05925 1 MAPLVYKFGGTSLGTAESIRRVCDIICK----EKPSFVVVSAVAGVTDLLEEFCRLSKGKREALTEKIREKHEEIAKELG 76 (440)
T ss_pred CCcEEEEECccccCCHHHHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999855 5555555432 356788888754444443221 10000 0 0000
Q ss_pred ------------------cCCCHHHHHHHHHHHhH-HHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCCceeeeee
Q 006709 161 ------------------RITDSESLAAAMEAAGG-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKR 221 (634)
Q Consensus 161 ------------------RvT~~~~l~~~~~a~G~-in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg~~l~ak~ 221 (634)
...++...+.+. +.|+ +...+++. .|++.|++ +..+++.+- +++..
T Consensus 77 ~~~~~~~~~~~L~~~~~~~~~~~~~~d~i~-s~GE~~Sa~l~a~--------~L~~~Gi~----a~~ld~~~~-i~t~~- 141 (440)
T PRK05925 77 IEFSLSPWWERLEHFEDVEEISSEDQARIL-AIGEDISASLICA--------YCCTYVLP----LEFLEARQV-ILTDD- 141 (440)
T ss_pred cchhhhHHHHHHHHHHHhCcCCchhhhhhe-ehhHHHHHHHHHH--------HHHhCCCC----eEEEcHHHh-EeecC-
Confidence 001122233332 3343 35556665 48889987 555554432 22211
Q ss_pred cccccCccccccceE--EEecHHHHHHHHcCCcEEEEcCC-ccCCCCcee---eechHHHHHHHHHHcCCCEEEEeeccc
Q 006709 222 KGVVDGVDYGATGEV--KKVDVTRMRERLDGGCLVILSNL-GYSSSGEVL---NCNTYEVATACALAIEADKLICIIDGP 295 (634)
Q Consensus 222 ~g~~~g~d~g~~G~v--~~vd~~~I~~LLd~G~IPVv~~v-~~~~~Gei~---nid~D~lAa~LA~aL~AdkLI~LTDVd 295 (634)
.|+. ..+ ..+.....+..++.+.|||+.+. +.+.+|++. ..++|.+|+.+|..|+||.++++||||
T Consensus 142 -------~~~~-a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVd 213 (440)
T PRK05925 142 -------QYLR-AVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVN 213 (440)
T ss_pred -------Cccc-cccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCC
Confidence 1110 111 11222333335677889999986 778888866 458999999999999999999999999
Q ss_pred cc---C----CCCccccccCHHHHHHHHH
Q 006709 296 IL---D----ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 296 gl---d----~~gklI~~ls~~e~~~li~ 317 (634)
|+ | +++++|++++.+|+.++..
T Consensus 214 GvytaDP~~~~~A~~i~~is~~ea~ela~ 242 (440)
T PRK05925 214 GIYTMDPKIIKDAQLIPELSFEEMQNLAS 242 (440)
T ss_pred ccCCCCcCCCCCCeEeeEECHHHHHHHHh
Confidence 97 3 4689999999999888753
No 97
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.28 E-value=5.5e-11 Score=141.83 Aligned_cols=203 Identities=16% Similarity=0.074 Sum_probs=120.4
Q ss_pred CCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCccc---c--------------cCCc
Q 006709 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK---Y--------------LGRY 160 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~---~--------------~~G~ 160 (634)
++++|.|+||+.+.+.+ ++++++-|..-.+.+.++|+|.++...++..|.++-.... + ...+
T Consensus 7 ~~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 86 (861)
T PRK08961 7 DRWVVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQRHRELLAEL 86 (861)
T ss_pred CCcEEEEECccccCCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999998866 7777777665445678888888875444433322210000 0 0000
Q ss_pred -------------------------cCCCHHHHHHHHHHHhHH-HHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccCC
Q 006709 161 -------------------------RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASG 214 (634)
Q Consensus 161 -------------------------RvT~~~~l~~~~~a~G~i-n~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~dg 214 (634)
+-.++...+.+ .+.|+. +..|+++ .|++.|++ +..+++.+-
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i-~s~GE~lSa~lla~--------~L~~~Gi~----a~~ld~~~~ 153 (861)
T PRK08961 87 GVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEV-LGQGELLSTTLGAA--------YLEASGLD----MGWLDAREW 153 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheE-EEehHHHHHHHHHH--------HHHhCCCC----cEEEcHHHh
Confidence 00011111111 123322 3444444 58889988 444443332
Q ss_pred ceeeeeec-ccccCccccccceE-EEecHHHHHHHHcCC-cEEEEcCC-ccCCCCceee---echHHHHHHHHHHcCCCE
Q 006709 215 NFLAAKRK-GVVDGVDYGATGEV-KKVDVTRMRERLDGG-CLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADK 287 (634)
Q Consensus 215 ~~l~ak~~-g~~~g~d~g~~G~v-~~vd~~~I~~LLd~G-~IPVv~~v-~~~~~Gei~n---id~D~lAa~LA~aL~Adk 287 (634)
+..... .......+. ...+ ...+...++.+++.+ .|||+.+. +.+..|++.. .++|.+|+.+|.+|+||+
T Consensus 154 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~ 230 (861)
T PRK08961 154 --LTALPQPNQSEWSQYL-SVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASR 230 (861)
T ss_pred --EeecCccccccccccc-cceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCE
Confidence 221110 000000000 0011 113456777777766 49999986 6777887664 489999999999999999
Q ss_pred EEEeeccccc---C----CCCccccccCHHHHHHHHH
Q 006709 288 LICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 288 LI~LTDVdgl---d----~~gklI~~ls~~e~~~li~ 317 (634)
|+++|||+|+ | +++++|++|+.+|+.++..
T Consensus 231 ~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~ 267 (861)
T PRK08961 231 VEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIAT 267 (861)
T ss_pred EEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHH
Confidence 9999999997 3 3678999999999988764
No 98
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.28 E-value=4.5e-11 Score=112.46 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=90.6
Q ss_pred cccccCccchHHHHHHhHHHHHH-cc--cCccCCHHHHHhhc-----CcEEEEEECCeEEEEEEEeeecCC---CeEEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVE-SG--ALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFKE---KCGEVA 517 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~-~~--~~~~~~~~~~~~~l-----~~~~V~~~~g~iiG~~~l~~~~~~---~~~ei~ 517 (634)
..+|+++.+|++.+.++...... .. .....+.+.+...+ ..+++++.++++||++.+.....+ ..+++
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~- 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF- 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE-
Confidence 35899999999999999753210 00 11122444554443 146788889999999998754221 23555
Q ss_pred EEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHH-cCCcEEEEec----HHhHHHHHhCCCe
Q 006709 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFR 592 (634)
Q Consensus 518 ~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~-~g~~~l~l~t----~~a~~~Y~k~GF~ 592 (634)
.++|+|+|||||+|+.|+ +.+.+++.+ .++..+.+.+ +++.+||+++||+
T Consensus 83 ~~~v~p~~rg~Gig~~ll-------------------------~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~ 137 (162)
T PRK10140 83 GICVDSRWKNRGVASALM-------------------------REMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFE 137 (162)
T ss_pred EEEECHHHcCCCHHHHHH-------------------------HHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCE
Confidence 699999999999999999 888888877 6889888877 5799999999999
Q ss_pred eccc
Q 006709 593 ECSI 596 (634)
Q Consensus 593 ~~~~ 596 (634)
.++.
T Consensus 138 ~~g~ 141 (162)
T PRK10140 138 IEGT 141 (162)
T ss_pred EEee
Confidence 9775
No 99
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.23 E-value=9.6e-11 Score=98.58 Aligned_cols=75 Identities=36% Similarity=0.709 Sum_probs=63.9
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH
Q 006709 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA 568 (634)
Q Consensus 489 ~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 568 (634)
.+++++++++++|++.+.+. +...+|..++|+|+|||||+|++|+ +++.+.+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~--~~~~~i~~~~v~~~~rg~Gig~~ll-------------------------~~~~~~~- 55 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPN--EDFAYIGYLAVDPEYRGKGIGSKLL-------------------------NYLLEKA- 55 (79)
T ss_dssp EEEEEEETTEEEEEEEEEET--TTEEEEEEEEE-GGGTTSSHHHHHH-------------------------HHHHHHH-
T ss_pred EEEEEEECCEEEEEEEEEEc--CCEEEEEEEEECHHHcCCCHHHHHH-------------------------HHHHHHc-
Confidence 57899999999999999754 3588999999999999999999999 8887777
Q ss_pred HcCCcEEEEec-HHhHHHHHhCCCee
Q 006709 569 SLGLDMLFLLT-TRTADWFKSRGFRE 593 (634)
Q Consensus 569 ~~g~~~l~l~t-~~a~~~Y~k~GF~~ 593 (634)
+.+.+++.+ ..+.+||+++||++
T Consensus 56 --~~~~i~l~~~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 56 --KSKKIFLFTNPAAIKFYEKLGFEE 79 (79)
T ss_dssp --TCSEEEEEEEHHHHHHHHHTTEEE
T ss_pred --CCCcEEEEEcHHHHHHHHHCcCCC
Confidence 446677776 67899999999985
No 100
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.23 E-value=4.7e-10 Score=118.06 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=60.5
Q ss_pred cCCcEEEEcCC-ccCCCCceee---echHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHH
Q 006709 249 DGGCLVILSNL-GYSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 249 d~G~IPVv~~v-~~~~~Gei~n---id~D~lAa~LA~aL~AdkLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~ 317 (634)
..+.|||+.+. +.+..|++.. .++|..|+.+|..|+|+.+++.|||+|+ | +++++|+.++.+|+.++..
T Consensus 176 ~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~ 255 (292)
T cd04258 176 LAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMAT 255 (292)
T ss_pred hcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 45689999985 6677888774 5899999999999999999999999997 3 4689999999999998865
Q ss_pred hh
Q 006709 318 QR 319 (634)
Q Consensus 318 ~~ 319 (634)
.|
T Consensus 256 ~G 257 (292)
T cd04258 256 FG 257 (292)
T ss_pred CC
Confidence 43
No 101
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.20 E-value=2.5e-10 Score=102.79 Aligned_cols=108 Identities=24% Similarity=0.382 Sum_probs=83.1
Q ss_pred hHHHHHHhHHHHHHcccCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHH
Q 006709 458 DLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 533 (634)
Q Consensus 458 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l----~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~ 533 (634)
|++.+.++.... +..+++.+.+...+ ..++++..++++||++.+... ....++..++|+|+|||||+|++
T Consensus 1 d~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~i~~~~v~~~~rg~G~g~~ 74 (131)
T TIGR01575 1 DLKAVLEIEAAA----FAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIV--LDEAHILNIAVKPEYQGQGIGRA 74 (131)
T ss_pred CHHHHHHHHHhh----CCCCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEec--CCCeEEEEEEECHHHcCCCHHHH
Confidence 566677764332 22345555555554 245667778999999997743 24567889999999999999999
Q ss_pred HHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 534 LLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 534 Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
|+ +++++.+.+.+++.+.+.+ ..+.+||+++||+..+.
T Consensus 75 ll-------------------------~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 75 LL-------------------------RELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred HH-------------------------HHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 99 9999999999999998876 46889999999998765
No 102
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.20 E-value=1.1e-10 Score=109.71 Aligned_cols=126 Identities=25% Similarity=0.275 Sum_probs=90.6
Q ss_pred cccCc-cchHHHHHHhHHHHH-HcccCccCC---HHHHHhhcC-----cEEEEEECCeEEEEEEEeeec-----CCCeEE
Q 006709 451 TRTAK-VTDLSGIKQIIQPLV-ESGALVRRT---DEELLKALD-----SFYVVEREGQIIACAALFPFF-----KEKCGE 515 (634)
Q Consensus 451 iR~a~-~~D~~~i~~l~~~~~-~~~~~~~~~---~~~~~~~l~-----~~~V~~~~g~iiG~~~l~~~~-----~~~~~e 515 (634)
+|+++ .+|++.|.++++... ...+...++ .+++.+.+. ..+|++.+|+++|++.+.... .+....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 69999 999999999986442 222222222 334444442 589999999999999886421 334567
Q ss_pred EEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHc-CCcEEEEec----HHhHHHHHhCC
Q 006709 516 VAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASL-GLDMLFLLT----TRTADWFKSRG 590 (634)
Q Consensus 516 i~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~-g~~~l~l~t----~~a~~~Y~k~G 590 (634)
+..++|+|+|||||+|++++ ..+.+.+.+. +++.|.+.+ .+++++|+|.|
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~-------------------------~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~G 135 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAML-------------------------RALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAG 135 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHH-------------------------HHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT
T ss_pred EeeeeechhhcCCCHHHHHH-------------------------HHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcC
Confidence 88889999999999999999 6666776655 899999988 57999999999
Q ss_pred Ceecccccchh
Q 006709 591 FRECSIEMIPE 601 (634)
Q Consensus 591 F~~~~~~~~~~ 601 (634)
|+.++.-.+|.
T Consensus 136 F~~~g~~~~~~ 146 (152)
T PF13523_consen 136 FRKVGEFEFPD 146 (152)
T ss_dssp -EEEEEEEESS
T ss_pred CEEeeEEECCC
Confidence 99999877764
No 103
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.18 E-value=4.9e-10 Score=132.84 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=62.8
Q ss_pred HHHHHH-HcCCcEEEEcCC-ccCCCCceeeec---hHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCH
Q 006709 242 TRMRER-LDGGCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTL 309 (634)
Q Consensus 242 ~~I~~L-Ld~G~IPVv~~v-~~~~~Gei~nid---~D~lAa~LA~aL~AdkLI~LTDVdgl---d----~~gklI~~ls~ 309 (634)
..|+++ .+.+.|||+.+. +.+..|++..+. +|.+|+.+|..|+||.++++|||||+ | +++++|++++.
T Consensus 172 ~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy 251 (819)
T PRK09436 172 RRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSY 251 (819)
T ss_pred HHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecH
Confidence 455554 456899999986 667788877664 89999999999999999999999997 3 46899999999
Q ss_pred HHHHHHH
Q 006709 310 QEADSLI 316 (634)
Q Consensus 310 ~e~~~li 316 (634)
+|+.++.
T Consensus 252 ~ea~el~ 258 (819)
T PRK09436 252 QEAMELS 258 (819)
T ss_pred HHHHHHH
Confidence 9988874
No 104
>PRK09034 aspartate kinase; Reviewed
Probab=99.18 E-value=1.6e-09 Score=120.70 Aligned_cols=194 Identities=15% Similarity=0.140 Sum_probs=123.7
Q ss_pred eEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchH-------HHHHHHHHcCC-ccc----------------
Q 006709 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHV-------QIDKLLSERGH-EAK---------------- 155 (634)
Q Consensus 101 ~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~-------~I~~~l~~lg~-~~~---------------- 155 (634)
+.|.|+||+.+.+.+ ++.+++-|. +.+.++|+|.++-. .++..|.++.. ..+
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~---~~~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (454)
T PRK09034 1 MKVVKFGGSSLASAEQFKKVLNIVK---SDPERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAGEDYEDIFEAIIARYA 77 (454)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHh---ccCCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 368999999998854 555555443 34667888888632 23333322110 000
Q ss_pred ----------------------ccCCccCCCHHHHHHHHHHHh-HHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeecc
Q 006709 156 ----------------------YLGRYRITDSESLAAAMEAAG-GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVA 212 (634)
Q Consensus 156 ----------------------~~~G~RvT~~~~l~~~~~a~G-~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~ 212 (634)
........++..++.+. +.| .++..+++. .|++.|++ +..+++.
T Consensus 78 ~~~~~L~~~~~~~~~~~~~l~~l~~~~~~~~~~~~d~l~-s~GE~~S~~l~a~--------~L~~~g~~----a~~~~~~ 144 (454)
T PRK09034 78 EIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFK-ARGEDLNAKLIAA--------YLNYEGIP----ARYVDPK 144 (454)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHH--------HHHhCCCC----cEEEchH
Confidence 00000111233344333 344 335556665 47889988 5555555
Q ss_pred CCceeeeeecccccCccccccceEEEecHHHHHHHHcCCcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEE
Q 006709 213 SGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKL 288 (634)
Q Consensus 213 dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LLd~G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkL 288 (634)
+-.+++.. +++. ..+.....+.+..++..+.|||+.+. +.+..|++..+ .+|..|+.+|.+|+||.+
T Consensus 145 ~~~~~t~~--------~~~~-a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~ 215 (454)
T PRK09034 145 EAGIIVTD--------EPGN-AQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLY 215 (454)
T ss_pred HceEEecC--------CcCc-eeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEE
Confidence 44344322 1221 12323356777777778889999985 77888887755 689999999999999999
Q ss_pred EEeeccccc---C----CCCccccccCHHHHHHHHHhh
Q 006709 289 ICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 319 (634)
Q Consensus 289 I~LTDVdgl---d----~~gklI~~ls~~e~~~li~~~ 319 (634)
.+.|||||+ | |+++++++++.+|+.++...|
T Consensus 216 ~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~G 253 (454)
T PRK09034 216 ENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAG 253 (454)
T ss_pred EEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCC
Confidence 999999997 4 578999999999999986443
No 105
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.17 E-value=2.9e-10 Score=108.67 Aligned_cols=123 Identities=23% Similarity=0.306 Sum_probs=94.0
Q ss_pred ccccccccCccchHH--HHHHhHHHHHHcccC--ccCCHHHHHhhc----CcEEEEEE---CC----eEEEEEEEeeecC
Q 006709 446 DLYEGTRTAKVTDLS--GIKQIIQPLVESGAL--VRRTDEELLKAL----DSFYVVER---EG----QIIACAALFPFFK 510 (634)
Q Consensus 446 D~Ye~iR~a~~~D~~--~i~~l~~~~~~~~~~--~~~~~~~~~~~l----~~~~V~~~---~g----~iiG~~~l~~~~~ 510 (634)
.....+|++..+|+. .+..+.. ..+. .+|+.+.+...+ ..++++.. ++ +++|++.......
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~ 84 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEA----RTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDG 84 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhh----hcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecC
Confidence 445679999999999 6666632 2232 456777776666 35666665 33 5999999863333
Q ss_pred C----CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCC-cEEEEec----HH
Q 006709 511 E----KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGL-DMLFLLT----TR 581 (634)
Q Consensus 511 ~----~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~-~~l~l~t----~~ 581 (634)
. ..++|..|+|+|+|||+|||++|+ +.+++.+++.+. ..+.|.+ ..
T Consensus 85 ~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll-------------------------~~~~~~~~~~~~~~~~~L~V~~~N~~ 139 (177)
T COG0456 85 RPSADHEGHIYNLAVDPEYRGRGIGRALL-------------------------DEALERLRERGLADKIVLEVRESNEA 139 (177)
T ss_pred CccccCccEEEEEEEChHhhcCCHHHHHH-------------------------HHHHHHHHhcCCCceEEEEEecCChH
Confidence 2 278999999999999999999999 888888888886 8888888 57
Q ss_pred hHHHHHhCCCeecccc
Q 006709 582 TADWFKSRGFRECSIE 597 (634)
Q Consensus 582 a~~~Y~k~GF~~~~~~ 597 (634)
|+.||+++||+...+.
T Consensus 140 Ai~lY~~~GF~~~~~~ 155 (177)
T COG0456 140 AIGLYRKLGFEVVKIR 155 (177)
T ss_pred HHHHHHHcCCEEEeee
Confidence 9999999999997653
No 106
>PRK10314 putative acyltransferase; Provisional
Probab=99.15 E-value=3.4e-10 Score=108.06 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=84.4
Q ss_pred cccCccchHHHHHHhHHHHH--HcccCccCCHHHHHhh----cCcEEEEEECCeEEEEEEEeeecCC-CeEEEEEEEECC
Q 006709 451 TRTAKVTDLSGIKQIIQPLV--ESGALVRRTDEELLKA----LDSFYVVEREGQIIACAALFPFFKE-KCGEVAAIGVSP 523 (634)
Q Consensus 451 iR~a~~~D~~~i~~l~~~~~--~~~~~~~~~~~~~~~~----l~~~~V~~~~g~iiG~~~l~~~~~~-~~~ei~~l~V~p 523 (634)
+...+.+++..+..|-.... +.+... +++... ....+++..++++||++.+.+.... ..++|..++|+|
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~----~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~ 84 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPY----QDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSE 84 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCc----cccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECH
Confidence 45666777777777755443 223321 122111 1235566789999999999864322 357899999999
Q ss_pred CCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHc-CCcEEEEec-HHhHHHHHhCCCeecccc
Q 006709 524 ECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASL-GLDMLFLLT-TRTADWFKSRGFRECSIE 597 (634)
Q Consensus 524 ~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~-g~~~l~l~t-~~a~~~Y~k~GF~~~~~~ 597 (634)
+|||+|+|++|| +.+++.+++. +...+++.+ ..+..||+++||+..+..
T Consensus 85 ~~rG~GiG~~Lm-------------------------~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~~g~~ 135 (153)
T PRK10314 85 ALRGEKVGQQLM-------------------------SKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIPVTEV 135 (153)
T ss_pred HHhCCCHHHHHH-------------------------HHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEECCCc
Confidence 999999999999 7777777664 778888887 457899999999997753
No 107
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.14 E-value=4.3e-10 Score=127.99 Aligned_cols=120 Identities=19% Similarity=0.263 Sum_probs=93.5
Q ss_pred cccccC-ccchHHHHHHhHHHHHHcccCccCCHHHHHhhc----CcEEEEEE--CCeEEEEEEEeee-----cCCCeEEE
Q 006709 449 EGTRTA-KVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER--EGQIIACAALFPF-----FKEKCGEV 516 (634)
Q Consensus 449 e~iR~a-~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l----~~~~V~~~--~g~iiG~~~l~~~-----~~~~~~ei 516 (634)
..||++ +.+|++.|.+|++.. + ..+++.+.+...+ ..++|++. +|++|||+..... .....++|
T Consensus 83 ~~IR~~~~~~D~~~I~~L~~~~---~-~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i 158 (547)
T TIGR03103 83 FTVRRLRGPADVDAINRLYAAR---G-MVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSL 158 (547)
T ss_pred cEEEeCCChhHHHHHHHHHHhc---C-CCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEE
Confidence 578997 789999999998652 2 2344555554443 25788875 6999999976422 11234789
Q ss_pred EEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCe
Q 006709 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFR 592 (634)
Q Consensus 517 ~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~ 592 (634)
..|+|+|+|||||+|++|| +.+++.+++.|+..+++.+ ..|.+||+++||+
T Consensus 159 ~~l~V~P~~Rg~GIG~~Ll-------------------------~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~ 213 (547)
T TIGR03103 159 WCLAVDPQAAHPGVGEALV-------------------------RALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFR 213 (547)
T ss_pred EEEEECHHHcCCCHHHHHH-------------------------HHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCE
Confidence 9999999999999999999 9999999999999999887 4789999999999
Q ss_pred ecccc
Q 006709 593 ECSIE 597 (634)
Q Consensus 593 ~~~~~ 597 (634)
.....
T Consensus 214 ~~~~y 218 (547)
T TIGR03103 214 RIPVF 218 (547)
T ss_pred EeeEE
Confidence 87653
No 108
>PRK10514 putative acetyltransferase; Provisional
Probab=99.14 E-value=5.5e-10 Score=103.73 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=79.4
Q ss_pred cccccCccchHHHHHHhHHHHHHc--ccCccCCHHHHHhhc------CcEEEEE-ECCeEEEEEEEeeecCCCeEEEEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVES--GALVRRTDEELLKAL------DSFYVVE-REGQIIACAALFPFFKEKCGEVAAI 519 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~--~~~~~~~~~~~~~~l------~~~~V~~-~~g~iiG~~~l~~~~~~~~~ei~~l 519 (634)
..||+++++|++.+.+++...... ....+.+.+.+.+.+ ..++++. .++++||++.+.+ .++..+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~------~~~~~~ 75 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG------GHMEAL 75 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec------CcEeEE
Confidence 358999999999999998754321 122222333333222 2344554 5899999998763 246689
Q ss_pred EECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeecc
Q 006709 520 GVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 595 (634)
Q Consensus 520 ~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~ 595 (634)
+|+|+|||||+|++|+ +++.+.+. .+.+.+ +++.+||+|+||+.++
T Consensus 76 ~v~p~~rgkGig~~Ll-------------------------~~~~~~~~-----~i~~~v~~~N~~a~~~yek~Gf~~~~ 125 (145)
T PRK10514 76 FVDPDVRGCGVGRMLV-------------------------EHALSLHP-----ELTTDVNEQNEQAVGFYKKMGFKVTG 125 (145)
T ss_pred EECHHhccCCHHHHHH-------------------------HHHHHhcc-----ccEEEeecCCHHHHHHHHHCCCEEec
Confidence 9999999999999999 77766542 333333 5799999999999987
Q ss_pred ccc
Q 006709 596 IEM 598 (634)
Q Consensus 596 ~~~ 598 (634)
...
T Consensus 126 ~~~ 128 (145)
T PRK10514 126 RSE 128 (145)
T ss_pred ccc
Confidence 643
No 109
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.13 E-value=2.5e-09 Score=113.17 Aligned_cols=70 Identities=21% Similarity=0.256 Sum_probs=59.8
Q ss_pred CCcEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHHh
Q 006709 250 GGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 250 ~G~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~~ 318 (634)
.+.|||+.+. +.+..|++..+ .+|..|+.+|..|+|+.+++.|||+|+ | +++++|++|+.+|+.++...
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~ 268 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYY 268 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhC
Confidence 5779999986 66777887755 689999999999999999999999997 3 46899999999999988654
Q ss_pred h
Q 006709 319 R 319 (634)
Q Consensus 319 ~ 319 (634)
+
T Consensus 269 G 269 (306)
T cd04247 269 G 269 (306)
T ss_pred c
Confidence 3
No 110
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.13 E-value=5.9e-10 Score=105.86 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=74.3
Q ss_pred cEEEEEECCe--EEEEEEEeee--cCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHH
Q 006709 489 SFYVVEREGQ--IIACAALFPF--FKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIE 564 (634)
Q Consensus 489 ~~~V~~~~g~--iiG~~~l~~~--~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 564 (634)
.++++..|++ .||++...-- .+..+++|..++|+++|||||||++|+ +.++
T Consensus 56 ~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLv-------------------------r~aI 110 (165)
T KOG3139|consen 56 CFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALV-------------------------RKAI 110 (165)
T ss_pred eEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHH-------------------------HHHH
Confidence 4555554433 4887776421 123579999999999999999999999 8999
Q ss_pred HHHHHcCCcEEEEec----HHhHHHHHhCCCeecccccchhHhhhhccCCCCceEEEe
Q 006709 565 KKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMK 618 (634)
Q Consensus 565 ~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~~~s~~~~k 618 (634)
+.+++.|+..|.|.| ..|.++|+++||+..... .+|.+.+...+.|+
T Consensus 111 d~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~-------~~YYlng~dA~rl~ 161 (165)
T KOG3139|consen 111 DAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRL-------FRYYLNGMDALRLK 161 (165)
T ss_pred HHHHHCCCcEEEEeccccchHHHHHHHhcCceEecce-------eEEEECCcceEEEE
Confidence 999999999999999 469999999999885532 24555555555554
No 111
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.09 E-value=7.7e-10 Score=102.07 Aligned_cols=122 Identities=24% Similarity=0.389 Sum_probs=98.8
Q ss_pred cccccCccchHHH-HHHhHHHHHHcccCccCCHHHHHhhc-------CcEEE--EEE--CCeEEEEEEEeeec-----CC
Q 006709 449 EGTRTAKVTDLSG-IKQIIQPLVESGALVRRTDEELLKAL-------DSFYV--VER--EGQIIACAALFPFF-----KE 511 (634)
Q Consensus 449 e~iR~a~~~D~~~-i~~l~~~~~~~~~~~~~~~~~~~~~l-------~~~~V--~~~--~g~iiG~~~l~~~~-----~~ 511 (634)
.++|++..+|+.. ..++..++...+.. +++++.+.+ +.+++ +++ .++|||.+.+..-. -.
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~v---t~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g 83 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVV---TREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCG 83 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhcccc---CHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccc
Confidence 4799999999996 78888777777776 556665554 22333 333 48999999997422 23
Q ss_pred CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCC
Q 006709 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRG 590 (634)
Q Consensus 512 ~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~G 590 (634)
.++.|..+.|+++||||++|+.|+ +.+.+.++++|+-.+.|.+ +....||+|+|
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv-------------------------~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG 138 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLV-------------------------ETLVDLAKSLGCYKIILDCDPKNVKFYEKCG 138 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHH-------------------------HHHHHHHHhcCcEEEEEecchhhhhHHHHcC
Confidence 568999999999999999999999 9999999999999999999 66899999999
Q ss_pred Ceeccccc
Q 006709 591 FRECSIEM 598 (634)
Q Consensus 591 F~~~~~~~ 598 (634)
|...+.+|
T Consensus 139 ~s~~~~~M 146 (150)
T KOG3396|consen 139 YSNAGNEM 146 (150)
T ss_pred ccccchhh
Confidence 99877665
No 112
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.08 E-value=1.2e-09 Score=116.33 Aligned_cols=119 Identities=14% Similarity=0.210 Sum_probs=94.4
Q ss_pred cccccCccchHHHHHHhHHHHHHcc-cCccCCHHHHHhhcC--cEEEEEE-----CCeEEEEEEEeeecCCCeEEEEEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESG-ALVRRTDEELLKALD--SFYVVER-----EGQIIACAALFPFFKEKCGEVAAIG 520 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~-~~~~~~~~~~~~~l~--~~~V~~~-----~g~iiG~~~l~~~~~~~~~ei~~l~ 520 (634)
.+||+++++|++.+.+|.+...... ...+++.+++.+.+. .++++.. ++.+||++.+.+ .....+|..++
T Consensus 187 ~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~~~~~~~~~d~~gd~givG~~~~~~--~~~~~~I~~l~ 264 (320)
T TIGR01686 187 LNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKEEIVTVSMSDRFGDSGIIGIFVFEK--KEGNLFIDDLC 264 (320)
T ss_pred EEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCCCEEEEEEEecCCCCceEEEEEEEe--cCCcEEEEEEE
Confidence 4699999999999999986542221 124567777777663 3444442 578999998764 34567899999
Q ss_pred ECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec------HHhHHHHHhCCCeec
Q 006709 521 VSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFREC 594 (634)
Q Consensus 521 V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t------~~a~~~Y~k~GF~~~ 594 (634)
|+|++||+|+|++|| .++.+.|++.|++.+++.+ .+|++||+++||+..
T Consensus 265 vs~r~~grGig~~Ll-------------------------~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 265 MSCRALGRGVETRML-------------------------RWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EcHhHhcCcHHHHHH-------------------------HHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 999999999999999 9999999999999998865 469999999999863
No 113
>PLN02551 aspartokinase
Probab=99.07 E-value=5.8e-09 Score=117.83 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=122.0
Q ss_pred CeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHc-------CCcc-----------------
Q 006709 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSER-------GHEA----------------- 154 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~l-------g~~~----------------- 154 (634)
-++|.|+||+.+.+.+ ++++++-|..- ...++|+|.++-.-++..|-++ +.+.
T Consensus 52 ~~~V~KFGGtSv~~~e~i~~v~~iI~~~--~~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 129 (521)
T PLN02551 52 LTVVMKFGGSSVASAERMREVADLILSF--PDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRT 129 (521)
T ss_pred ceEEEEECCCccCCHHHHHHHHHHHHhc--CCCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Confidence 4679999999999866 77777666542 2345778887633333333221 0000
Q ss_pred --------c-----------ccCCc---cCCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeecc
Q 006709 155 --------K-----------YLGRY---RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVA 212 (634)
Q Consensus 155 --------~-----------~~~G~---RvT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~ 212 (634)
. ...|. +..++...+.+......+...|+++ .|++.|++ +..+++.
T Consensus 130 ~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~--------~L~~~Gi~----a~~lda~ 197 (521)
T PLN02551 130 ADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAA--------YLNKIGVK----ARQYDAF 197 (521)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHH--------HHHHCCCC----cEEechH
Confidence 0 00010 0112233333332222334556665 47889988 5666655
Q ss_pred CCceeeeeecccccCccccccceEEEecHHHHHHHH-----cCCcEEEEcCC-ccC-CCCceeee---chHHHHHHHHHH
Q 006709 213 SGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL-----DGGCLVILSNL-GYS-SSGEVLNC---NTYEVATACALA 282 (634)
Q Consensus 213 dg~~l~ak~~g~~~g~d~g~~G~v~~vd~~~I~~LL-----d~G~IPVv~~v-~~~-~~Gei~ni---d~D~lAa~LA~a 282 (634)
+-.+++.. .|+. ..+.......+.+.+ +.+.|||+.+. +.+ .+|++..+ -+|..|+.+|.+
T Consensus 198 ~~gi~t~~--------~~~~-a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~ 268 (521)
T PLN02551 198 DIGFITTD--------DFTN-ADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKA 268 (521)
T ss_pred HcceEecC--------CCCc-cchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHH
Confidence 54444422 2221 122223334444443 45689999986 777 78988765 589999999999
Q ss_pred cCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHHhh
Q 006709 283 IEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 319 (634)
Q Consensus 283 L~AdkLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~~~ 319 (634)
|+|+.+.+.|||||+ | +++++|++|+.+|+.++..-|
T Consensus 269 L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~G 312 (521)
T PLN02551 269 LGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFG 312 (521)
T ss_pred cCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCC
Confidence 999999999999997 4 478999999999999886544
No 114
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.05 E-value=3.3e-09 Score=103.08 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=105.8
Q ss_pred ccccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhc--------CcEEEEEECCeEEEEEEEeeecCC----CeEE
Q 006709 448 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--------DSFYVVEREGQIIACAALFPFFKE----KCGE 515 (634)
Q Consensus 448 Ye~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l--------~~~~V~~~~g~iiG~~~l~~~~~~----~~~e 515 (634)
++.||+.++.|++.|.++....+.. ....++.+++ ..-+|++++|++||++.+++..-. ...-
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~~-----~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~ 77 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFGP-----GREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLG 77 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhhc-----chHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEE
Confidence 4679999999999999997655542 1223333333 256889999999999999886433 3356
Q ss_pred EEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeecc
Q 006709 516 VAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECS 595 (634)
Q Consensus 516 i~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~ 595 (634)
++-|+|+|+|||||||++|+ ...++.++..|...+.+.- ...+|.+.||+.+.
T Consensus 78 LaPLaV~p~~qg~GIG~~Lv-------------------------r~~le~a~~~G~~~v~vlG--dp~YY~rfGF~~~~ 130 (171)
T COG3153 78 LAPLAVDPEYQGQGIGSALV-------------------------REGLEALRLAGASAVVVLG--DPTYYSRFGFEPAA 130 (171)
T ss_pred EEeEEEchhhcCCcHHHHHH-------------------------HHHHHHHHHCCCCEEEEec--CcccccccCcEEcc
Confidence 78899999999999999999 8888999999999988774 46799999999988
Q ss_pred cccchhHhhhhccCCCCceEEEeecCC
Q 006709 596 IEMIPEERRKRINLSRNSKYYMKKLLP 622 (634)
Q Consensus 596 ~~~~~~~~~~~~~~~~~s~~~~k~l~~ 622 (634)
...++... ...+..++.+.|..
T Consensus 131 ~~~l~~p~-----~~~~~~fl~~~L~~ 152 (171)
T COG3153 131 GAKLYAPG-----PVPDERFLALELGD 152 (171)
T ss_pred ccccccCC-----CCCCceEEEEEccC
Confidence 77666321 13466666687764
No 115
>PRK01346 hypothetical protein; Provisional
Probab=99.03 E-value=2.4e-09 Score=117.40 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=91.3
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHh---hc--CcEEEEEECCeEEEEEEEeeec-----C--CCeEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLK---AL--DSFYVVEREGQIIACAALFPFF-----K--EKCGEV 516 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~---~l--~~~~V~~~~g~iiG~~~l~~~~-----~--~~~~ei 516 (634)
..||+++.+|++++.+|........ .+.+.+.. .. ..+++++.+++++|++.+.++. . .+.++|
T Consensus 7 ~~iR~~~~~D~~~i~~L~~~~f~~~----~~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i 82 (411)
T PRK01346 7 ITIRTATEEDWPAWFRAAATGFGDS----PSDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGV 82 (411)
T ss_pred ceeecCCHHHHHHHHHHHHHHcCCC----CChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEE
Confidence 4699999999999999976443221 12222222 22 3578888999999999987653 1 145889
Q ss_pred EEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeeccc
Q 006709 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 596 (634)
Q Consensus 517 ~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~ 596 (634)
..++|+|+|||||+|++|| +++++.+++.|+..+.+... ...||+++||..+..
T Consensus 83 ~~v~V~P~~RgrGig~~Ll-------------------------~~~l~~a~~~g~~~~~L~~~-~~~~Y~r~Gf~~~~~ 136 (411)
T PRK01346 83 TAVTVAPTHRRRGLLTALM-------------------------REQLRRIRERGEPVAALTAS-EGGIYGRFGYGPATY 136 (411)
T ss_pred EEEEEChhhcCCCHHHHHH-------------------------HHHHHHHHHCCCcEEEEECC-chhhHhhCCCeeccc
Confidence 9999999999999999999 89999999999988877763 357999999988754
No 116
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.00 E-value=1.3e-08 Score=98.47 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=51.1
Q ss_pred cCCcEEEEcCC----ccCCCCceeeechHHHHHHHHHHcCCCEEEEeecccccC---CCCccccccCHHHHH
Q 006709 249 DGGCLVILSNL----GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---ESGHLIRFLTLQEAD 313 (634)
Q Consensus 249 d~G~IPVv~~v----~~~~~Gei~nid~D~lAa~LA~aL~AdkLI~LTDVdgld---~~gklI~~ls~~e~~ 313 (634)
..+.+||+-|- -.|.--..+-+-+|.+|.++|.+++|.++|+.|||||+. ++++++++|+..|+.
T Consensus 91 ~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl~ 162 (212)
T COG2054 91 KPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDLK 162 (212)
T ss_pred CcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhcc
Confidence 45667777653 234445678899999999999999999999999999973 567899988876654
No 117
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.00 E-value=4.5e-09 Score=109.42 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=82.8
Q ss_pred ccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhc-------CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCC
Q 006709 452 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (634)
Q Consensus 452 R~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l-------~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~ 524 (634)
.+++++|+++|.+|+..........+++.+. ...+ ...+++..++++||++.+.+.. ....++..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~-~~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQV-LRGLREPGAGHTRHLVAVDSDPIVGYANLVPAR-GTDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHH-HhhccccCCCCceEEEEEECCEEEEEEEEEcCC-CCcceEEEEEECHh
Confidence 3578899999999987655543333444433 3333 1467888899999999988653 23467889999999
Q ss_pred CcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 525 CRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 525 ~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
|||||+|++|| +.+++.+. ..+.+.+ ..|++||+++||+....
T Consensus 82 ~rg~GiG~~Ll-------------------------~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 82 HRRRGIGRALI-------------------------RALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred hcCCCHHHHHH-------------------------HHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 99999999999 66666653 3344444 46899999999987653
No 118
>PRK10562 putative acetyltransferase; Provisional
Probab=98.99 E-value=6.3e-09 Score=97.29 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=76.8
Q ss_pred ccccCccchHHHHHHhHHHHHHc-ccCccC-----CHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEE
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVES-GALVRR-----TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIG 520 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~-~~~~~~-----~~~~~~~~l---~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~ 520 (634)
.||+++.+|++.+.+++...... ...... ..+.+.+.. ..++++..++++||++.+... .++..++
T Consensus 1 ~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-----~~i~~~~ 75 (145)
T PRK10562 1 MIREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-----RFVGALF 75 (145)
T ss_pred CcccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-----cEEEEEE
Confidence 38999999999999997532111 000000 011111111 246778888999999988632 3577899
Q ss_pred ECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 521 VSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 521 V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
|+|+|||+|+|+.|+ +++++.+ ..+.+.+ ..+.+||+|+||+.++.
T Consensus 76 v~~~~rg~G~g~~ll-------------------------~~~~~~~-----~~~~~~v~~~N~~s~~~y~k~Gf~~~~~ 125 (145)
T PRK10562 76 VAPKAVRRGIGKALM-------------------------QHVQQRY-----PHLSLEVYQKNQRAVNFYHAQGFRIVDS 125 (145)
T ss_pred ECHHHcCCCHHHHHH-------------------------HHHHhhC-----CeEEEEEEcCChHHHHHHHHCCCEEccc
Confidence 999999999999999 6666643 3344434 57899999999999875
No 119
>PHA01807 hypothetical protein
Probab=98.99 E-value=6.5e-09 Score=99.65 Aligned_cols=111 Identities=20% Similarity=0.174 Sum_probs=78.3
Q ss_pred CccchHHHHHHhHHHHHHcccCc-cC-CHHH----HHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEE---EEEEE
Q 006709 454 AKVTDLSGIKQIIQPLVESGALV-RR-TDEE----LLKAL----DSFYVVEREGQIIACAALFPFFKEKCGE---VAAIG 520 (634)
Q Consensus 454 a~~~D~~~i~~l~~~~~~~~~~~-~~-~~~~----~~~~l----~~~~V~~~~g~iiG~~~l~~~~~~~~~e---i~~l~ 520 (634)
|+.+|++.+..|......+.... ++ +.++ +.+.+ ...++++.++++||++.+.+.......+ +..|+
T Consensus 9 ~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lY 88 (153)
T PHA01807 9 AKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQY 88 (153)
T ss_pred hhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEE
Confidence 56778888888765443332211 01 1122 22111 2357788899999999987544332333 45579
Q ss_pred ECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhC
Q 006709 521 VSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSR 589 (634)
Q Consensus 521 V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~ 589 (634)
|+|+|||+|+|++|| +.+++.|++.|+..|.+.+ .+|..||++.
T Consensus 89 V~pe~RG~GiG~~Ll-------------------------~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 89 VLPEYRNAGVAREFL-------------------------RELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred ECHHHcCCCHHHHHH-------------------------HHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 999999999999999 9999999999999998888 4689999973
No 120
>PRK13688 hypothetical protein; Provisional
Probab=98.99 E-value=1.8e-09 Score=103.75 Aligned_cols=108 Identities=19% Similarity=0.357 Sum_probs=77.5
Q ss_pred ccccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeec---------CCCeEEEEE
Q 006709 448 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFF---------KEKCGEVAA 518 (634)
Q Consensus 448 Ye~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~---------~~~~~ei~~ 518 (634)
+.+||++..+|+++|.++....... ..-..++++..++++||++.+.... .....+|..
T Consensus 17 ~~~~~~~~~~dl~~l~~l~~~~f~~------------~~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~ 84 (156)
T PRK13688 17 FKKFREFGNQELSMLEELQANIIEN------------DSESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWK 84 (156)
T ss_pred HHHHHHhcHHHHHHHHhhhhhEeec------------CCCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEE
Confidence 3468999999999998884332211 0123678888999999998774321 234578999
Q ss_pred EEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeecccc
Q 006709 519 IGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 597 (634)
Q Consensus 519 l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~~ 597 (634)
++|+|+|||||+|++|+ +++. +.++. +.+.. ..+.+||+|+||+..+..
T Consensus 85 l~V~p~~rgkGiG~~Ll-------------------------~~a~----~~~~~-~~~~~~~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 85 LEVLPKYQNRGYGEMLV-------------------------DFAK----SFQLP-IKTIARNKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred EEECHHHcCCCHHHHHH-------------------------HHHH----HhCCe-EEEEeccchHHHHHhCCCEEeEEe
Confidence 99999999999999999 5433 33443 33332 468899999999988765
No 121
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.97 E-value=8.3e-09 Score=96.70 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=88.6
Q ss_pred ccccCccchHHHHHHhHHHHHHcccC---ccCCHHHHH---hhc-----CcEEEEEECCeEEEEEEEeeecC-CCeEEEE
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGAL---VRRTDEELL---KAL-----DSFYVVEREGQIIACAALFPFFK-EKCGEVA 517 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~~---~~~~~~~~~---~~l-----~~~~V~~~~g~iiG~~~l~~~~~-~~~~ei~ 517 (634)
.+|+++++|++.+.++........+. ...+.++.. +.+ ..++++..+|++||++.+..... ...+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~- 80 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFW- 80 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEE-
Confidence 58999999999999987532222211 112322221 222 14778888999999999985432 234666
Q ss_pred EEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHH-cCCcEEEEec----HHhHHHHHhCCCe
Q 006709 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFR 592 (634)
Q Consensus 518 ~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~-~g~~~l~l~t----~~a~~~Y~k~GF~ 592 (634)
.++++|++| +|+|++++ ..+.+.+.+ .+++.+.+.+ .++++||+++||+
T Consensus 81 g~~~~~~~~-~G~g~~~~-------------------------~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~ 134 (156)
T TIGR03585 81 GIYANPFCK-PGVGSVLE-------------------------EAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFE 134 (156)
T ss_pred EEEeChhhh-cCchHHHH-------------------------HHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCe
Confidence 566999999 99999999 888888864 6999999877 5799999999999
Q ss_pred ecccc
Q 006709 593 ECSIE 597 (634)
Q Consensus 593 ~~~~~ 597 (634)
.++..
T Consensus 135 ~~g~~ 139 (156)
T TIGR03585 135 REGVF 139 (156)
T ss_pred Eeeee
Confidence 98753
No 122
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.96 E-value=2.2e-09 Score=113.21 Aligned_cols=76 Identities=26% Similarity=0.507 Sum_probs=68.0
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH
Q 006709 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA 568 (634)
Q Consensus 489 ~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 568 (634)
.+++.++++++|||+.+.. .+|..++|+|+|||+|+|++|| +++++.++
T Consensus 7 ~~~v~~~~~~iVG~~~l~~------~~I~~vaV~p~~Rg~GiG~~Ll-------------------------~~l~~~a~ 55 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG------NVLKCVAVCPKYQGEGLALKIV-------------------------SELINKAY 55 (297)
T ss_pred EEEEEEECCEEEEEEEecc------CEEEEEEECHHHcCCCHHHHHH-------------------------HHHHHHHH
Confidence 4677778899999998863 2589999999999999999999 99999999
Q ss_pred HcCCcEEEEec-HHhHHHHHhCCCeecc
Q 006709 569 SLGLDMLFLLT-TRTADWFKSRGFRECS 595 (634)
Q Consensus 569 ~~g~~~l~l~t-~~a~~~Y~k~GF~~~~ 595 (634)
+.|++.+++.+ +.+..||+++||+..+
T Consensus 56 ~~g~~~i~L~t~~~~~~fYek~GF~~~~ 83 (297)
T cd02169 56 EEGIFHLFLFTKPKNAKFFRGLGFKELA 83 (297)
T ss_pred HCCCCEEEEEEcccHHHHHHHCCCEEec
Confidence 99999999998 4578999999999888
No 123
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=98.95 E-value=1.8e-08 Score=97.37 Aligned_cols=123 Identities=12% Similarity=0.115 Sum_probs=90.2
Q ss_pred cccccCccchHHHHHHhHH--HHHHcc---cC-ccCCHHHHHhhcC-----------cEEEEEECCeEEEEEEEeeecC-
Q 006709 449 EGTRTAKVTDLSGIKQIIQ--PLVESG---AL-VRRTDEELLKALD-----------SFYVVEREGQIIACAALFPFFK- 510 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~--~~~~~~---~~-~~~~~~~~~~~l~-----------~~~V~~~~g~iiG~~~l~~~~~- 510 (634)
..+|+++++|++.+.+++. ...... +. ...+.++..+.+. .+++++.++++||++.+.....
T Consensus 11 l~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~ 90 (179)
T PRK10151 11 LELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIEPL 90 (179)
T ss_pred EEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeeccC
Confidence 3589999999999999973 211111 11 1123344333331 2577778999999999875432
Q ss_pred CCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH-HcCCcEEEEec----HHhHHH
Q 006709 511 EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA-SLGLDMLFLLT----TRTADW 585 (634)
Q Consensus 511 ~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~-~~g~~~l~l~t----~~a~~~ 585 (634)
...++| .++++|+|||||+|++++ ..+.+++. ..++++|.+.+ .+++++
T Consensus 91 ~~~~~i-g~~i~~~~~g~G~~tea~-------------------------~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v 144 (179)
T PRK10151 91 NKTAYI-GYWLDESHQGQGIISQAL-------------------------QALIHHYAQSGELRRFVIKCRVDNPASNQV 144 (179)
T ss_pred CCceEE-EEEEChhhcCCcHHHHHH-------------------------HHHHHHHHhhCCccEEEEEEcCCCHHHHHH
Confidence 345788 678999999999999999 77778775 46899998877 579999
Q ss_pred HHhCCCeecccc
Q 006709 586 FKSRGFRECSIE 597 (634)
Q Consensus 586 Y~k~GF~~~~~~ 597 (634)
|+|+||+.+++.
T Consensus 145 ~ek~Gf~~~g~~ 156 (179)
T PRK10151 145 ALRNGFTLEGCL 156 (179)
T ss_pred HHHCCCEEEeEe
Confidence 999999998874
No 124
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.94 E-value=1.1e-08 Score=99.39 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=88.0
Q ss_pred ccccCccchHHHHHHhHHHHH-HcccC-ccC-CHHHH----Hhhc----CcEEEEEECCeEEEEEEEeeecC-CCeEEEE
Q 006709 450 GTRTAKVTDLSGIKQIIQPLV-ESGAL-VRR-TDEEL----LKAL----DSFYVVEREGQIIACAALFPFFK-EKCGEVA 517 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~-~~~~~-~~~-~~~~~----~~~l----~~~~V~~~~g~iiG~~~l~~~~~-~~~~ei~ 517 (634)
.+|+++++|++.+.++.+... ...+. .+. ...+. ...+ ...|++..+|++||++.+.+... ...+++
T Consensus 8 ~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~~- 86 (186)
T PRK15130 8 KLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEF- 86 (186)
T ss_pred EEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEEE-
Confidence 589999999999999865332 11111 111 11111 1111 24677788999999999875432 345677
Q ss_pred EEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH-HcCCcEEEEec----HHhHHHHHhCCCe
Q 006709 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA-SLGLDMLFLLT----TRTADWFKSRGFR 592 (634)
Q Consensus 518 ~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~-~~g~~~l~l~t----~~a~~~Y~k~GF~ 592 (634)
.++|+|+|||+|+|++++ ..+.+++. ..++.+|.+.+ .++.++|+++||+
T Consensus 87 ~~~v~~~~~g~G~g~~l~-------------------------~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~ 141 (186)
T PRK15130 87 QIIISPEYQGKGLATRAA-------------------------KLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFE 141 (186)
T ss_pred EEEECHHHcCCCHHHHHH-------------------------HHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCE
Confidence 699999999999999999 77778775 57999998877 4789999999999
Q ss_pred eccc
Q 006709 593 ECSI 596 (634)
Q Consensus 593 ~~~~ 596 (634)
..+.
T Consensus 142 ~~~~ 145 (186)
T PRK15130 142 VEGE 145 (186)
T ss_pred EEEE
Confidence 9765
No 125
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.94 E-value=1.5e-08 Score=105.43 Aligned_cols=122 Identities=18% Similarity=0.211 Sum_probs=87.4
Q ss_pred ccccCc-cchHHHHHHhHHHHHHcccC-ccCCHHHHHhhc-------CcEEEEEE--CCeEEEEEEEeeecC-CCeEEEE
Q 006709 450 GTRTAK-VTDLSGIKQIIQPLVESGAL-VRRTDEELLKAL-------DSFYVVER--EGQIIACAALFPFFK-EKCGEVA 517 (634)
Q Consensus 450 ~iR~a~-~~D~~~i~~l~~~~~~~~~~-~~~~~~~~~~~l-------~~~~V~~~--~g~iiG~~~l~~~~~-~~~~ei~ 517 (634)
.+|+++ ..|.+.+.++.......... ..++.+.+.... ..++++.. ++++||++.+..... ...++|.
T Consensus 151 ~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~ 230 (292)
T TIGR03448 151 TVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALGEVY 230 (292)
T ss_pred EeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCceeEEE
Confidence 577775 45888887775543332211 234555554321 24667766 689999976553221 2346787
Q ss_pred EEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCee
Q 006709 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRE 593 (634)
Q Consensus 518 ~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~ 593 (634)
.++|+|+|||||+|++|+ ..+.+++++.|+..+.+.+ ..+.+||+|+||+.
T Consensus 231 ~~~V~p~~rg~GiG~~ll-------------------------~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~ 285 (292)
T TIGR03448 231 VVGVDPAAQGRGLGDALT-------------------------LIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTV 285 (292)
T ss_pred EEEECHHHcCCCHHHHHH-------------------------HHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEE
Confidence 789999999999999999 8888999888999988877 46899999999998
Q ss_pred ccc
Q 006709 594 CSI 596 (634)
Q Consensus 594 ~~~ 596 (634)
...
T Consensus 286 ~~~ 288 (292)
T TIGR03448 286 AEV 288 (292)
T ss_pred ccc
Confidence 654
No 126
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.86 E-value=2.6e-08 Score=117.89 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=123.0
Q ss_pred CCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHc-CCccc---c---------------cC
Q 006709 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSER-GHEAK---Y---------------LG 158 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~l-g~~~~---~---------------~~ 158 (634)
|+++|.|+||+.+.+.+ ++++++-|..-.+.+ +|+|.++...++..|..+ ..... . ..
T Consensus 10 M~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~--~vVVVSA~~~~Td~L~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~ 87 (810)
T PRK09466 10 MGRQLHKFGGSSLADAKCYRRVAGILAEYSQPD--DLVVVSAAGKTTNQLISWLKLSQTDRLSAHQVQQTLRRYQQDLIE 87 (810)
T ss_pred ceeEEEEECccccCCHHHHHHHHHHHhhhccCC--EEEEEcCCCCCHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Confidence 45789999999999876 777776665433323 566666533333332211 10000 0 00
Q ss_pred Cc-------------------------cCCCHHHHHHHHHHHhHHHHHHHHhcCCCCchhhHHhcCCCCcceeEEeeccC
Q 006709 159 RY-------------------------RITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVAS 213 (634)
Q Consensus 159 G~-------------------------RvT~~~~l~~~~~a~G~in~~Lv~~L~~~~~~~~L~~~Gi~~~~~av~l~~~d 213 (634)
.+ ...++...+.+......+...|++. .|++.|++ +..+++.+
T Consensus 88 ~L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~--------~L~~~G~~----a~~ld~~~ 155 (810)
T PRK09466 88 GLLPAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAA--------LLNQQGLP----AAWLDARS 155 (810)
T ss_pred HhhcchhhhHHHHHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHH--------HHHhCCCC----cEEEcHHH
Confidence 00 0011122233222222334555555 48889988 56665443
Q ss_pred CceeeeeecccccCccccccceE-EEecHHHHHHHHcCC--cEEEEcCC-ccCCCCceeee---chHHHHHHHHHHcCCC
Q 006709 214 GNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRERLDGG--CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEAD 286 (634)
Q Consensus 214 g~~l~ak~~g~~~g~d~g~~G~v-~~vd~~~I~~LLd~G--~IPVv~~v-~~~~~Gei~ni---d~D~lAa~LA~aL~Ad 286 (634)
+++... + +...+ .....+.++++++.+ .|||+.+. +.+..|++..+ -+|..|+.+|.+|+|+
T Consensus 156 --~i~~~~--------~-~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~ 224 (810)
T PRK09466 156 --FLRAER--------A-AQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVE 224 (810)
T ss_pred --heecCC--------C-CCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCC
Confidence 343321 1 11222 122346788877654 79999985 67788887765 4899999999999999
Q ss_pred EEEEeeccccc---C----CCCccccccCHHHHHHHHHhhc
Q 006709 287 KLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (634)
Q Consensus 287 kLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~~~~ 320 (634)
.+.+.|||||+ | +++++|++|+.+|+.+|...|+
T Consensus 225 ~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~Ga 265 (810)
T PRK09466 225 RVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAA 265 (810)
T ss_pred EEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCc
Confidence 99999999997 4 5789999999999999987776
No 127
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.83 E-value=4.9e-08 Score=95.68 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=85.9
Q ss_pred ccccCccchHHHHHHhHHHHHH--cccCccC-----CHHH-------HHhhc----CcEEEEEE--CCeEEEEEEEeeec
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVE--SGALVRR-----TDEE-------LLKAL----DSFYVVER--EGQIIACAALFPFF 509 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~--~~~~~~~-----~~~~-------~~~~l----~~~~V~~~--~g~iiG~~~l~~~~ 509 (634)
.+|+++++|++.+.+++..... ..+.... ..++ +.... ...|++.. ++++||++.+....
T Consensus 19 ~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~~ 98 (194)
T PRK10809 19 VVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSNVV 98 (194)
T ss_pred EEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEeec
Confidence 5999999999999998764111 1111100 0111 11111 12344433 67999999997553
Q ss_pred CC--CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHH-cCCcEEEEec----HHh
Q 006709 510 KE--KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAAS-LGLDMLFLLT----TRT 582 (634)
Q Consensus 510 ~~--~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~-~g~~~l~l~t----~~a 582 (634)
.. ..+++ .+.|+|+|||||+|+.++ ..+.+++.+ +|+++|.+.+ .++
T Consensus 99 ~~~~~~~ei-g~~i~~~~~G~G~~~ea~-------------------------~~ll~~~~~~l~l~~i~~~v~~~N~~S 152 (194)
T PRK10809 99 RGSFHACYL-GYSLGQKWQGQGLMFEAL-------------------------QAAIRYMQRQQHMHRIMANYMPHNKRS 152 (194)
T ss_pred CCCeeeEEE-EEEECHHHcCCCHHHHHH-------------------------HHHHHHHHhcCCceEEEEEeeCCCHHH
Confidence 21 34677 789999999999999999 888899865 6999999998 579
Q ss_pred HHHHHhCCCeeccc
Q 006709 583 ADWFKSRGFRECSI 596 (634)
Q Consensus 583 ~~~Y~k~GF~~~~~ 596 (634)
+++|+|+||+.+++
T Consensus 153 ~~l~ek~Gf~~~g~ 166 (194)
T PRK10809 153 GDLLARLGFEKEGY 166 (194)
T ss_pred HHHHHHCCCcEEee
Confidence 99999999998775
No 128
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.81 E-value=3e-08 Score=106.30 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=70.7
Q ss_pred hcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHH
Q 006709 486 ALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEK 565 (634)
Q Consensus 486 ~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~ 565 (634)
.++.+++++++|++|||+.+.. ..|.+++|+|+|||+|+|++|+ .++++
T Consensus 29 ~~d~~vv~~~~~~lVg~g~l~g------~~ik~vaV~~~~rG~Glg~~L~-------------------------~~L~~ 77 (332)
T TIGR00124 29 PLEIFIAVYEDEEIIGCGGIAG------NVIKCVAIDESLRGEGLALQLM-------------------------TELEN 77 (332)
T ss_pred CCCEEEEEEECCEEEEEEEEec------CEEEEEEEcHHHcCCCHHHHHH-------------------------HHHHH
Confidence 3567888889999999999862 2488999999999999999999 99999
Q ss_pred HHHHcCCcEEEEecH-HhHHHHHhCCCeeccc
Q 006709 566 KAASLGLDMLFLLTT-RTADWFKSRGFRECSI 596 (634)
Q Consensus 566 ~a~~~g~~~l~l~t~-~a~~~Y~k~GF~~~~~ 596 (634)
.+++.|+..+++.|. ....||+++||.+...
T Consensus 78 ~a~~~G~~~l~l~Tk~~~~~fy~klGF~~i~~ 109 (332)
T TIGR00124 78 LAYELGRFHLFIFTKPEYAALFEYCGFKTLAE 109 (332)
T ss_pred HHHHcCCCEEEEEECchHHHHHHHcCCEEeee
Confidence 999999999999993 4678999999999775
No 129
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.75 E-value=1.1e-07 Score=87.20 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=83.3
Q ss_pred ccccCccchHHHHHHhHHHHHHcccC---cc-CCHHHHHhhcC-----------cEEEEEE-C-CeEEEEEEEeee-cCC
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGAL---VR-RTDEELLKALD-----------SFYVVER-E-GQIIACAALFPF-FKE 511 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~~---~~-~~~~~~~~~l~-----------~~~V~~~-~-g~iiG~~~l~~~-~~~ 511 (634)
.+|+++++|++.+.++++.-....+. .. .+.++..+.+. .+|++.. + +++||++.+... ...
T Consensus 3 ~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~~ 82 (142)
T PF13302_consen 3 TLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKNN 82 (142)
T ss_dssp EEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETTT
T ss_pred EEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccCC
Confidence 58999999999999997421111111 11 24444333321 2344444 3 479999999533 346
Q ss_pred CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHH-HHcCCcEEEEec----HHhHHHH
Q 006709 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKA-ASLGLDMLFLLT----TRTADWF 586 (634)
Q Consensus 512 ~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a-~~~g~~~l~l~t----~~a~~~Y 586 (634)
..+++ .+.|.|+|||+|+|+.++ ..+.+++ .+.|+..+.+.+ .++++++
T Consensus 83 ~~~ei-g~~i~~~~~g~G~~~~~~-------------------------~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~ 136 (142)
T PF13302_consen 83 NWAEI-GYWIGPDYRGKGYGTEAL-------------------------KLLLDWAFEELGLHRIIATVMADNEASRRLL 136 (142)
T ss_dssp TEEEE-EEEEEGGGTTSSHHHHHH-------------------------HHHHHHHHHTSTSSEEEEEEETT-HHHHHHH
T ss_pred Ccccc-ccchhHHHHhhhHHHHHH-------------------------HHHHHHHHhcCCcEEEEEEECcCCHHHHHHH
Confidence 77898 699999999999999999 8888888 689999999888 5799999
Q ss_pred HhCCCe
Q 006709 587 KSRGFR 592 (634)
Q Consensus 587 ~k~GF~ 592 (634)
+|.||+
T Consensus 137 ~k~GF~ 142 (142)
T PF13302_consen 137 EKLGFE 142 (142)
T ss_dssp HHTT-E
T ss_pred HHcCCC
Confidence 999996
No 130
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.58 E-value=9.3e-08 Score=90.55 Aligned_cols=124 Identities=18% Similarity=0.181 Sum_probs=84.6
Q ss_pred ccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEE-ECCeEEEEEEEeeec----CCCeEEEEEEEECCC
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFF----KEKCGEVAAIGVSPE 524 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~-~~g~iiG~~~l~~~~----~~~~~ei~~l~V~p~ 524 (634)
-||.|+++|+-.+...--....+.+...........+-...||++ .+|+||||+...-+. .+..+.|.+|+|.-.
T Consensus 3 ~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs 82 (193)
T KOG3235|consen 3 NIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRS 82 (193)
T ss_pred ccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhh
Confidence 589999999988766411101111111101111111224578888 579999998876333 234589999999999
Q ss_pred CcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHH-hCCCeecccc
Q 006709 525 CRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFK-SRGFRECSIE 597 (634)
Q Consensus 525 ~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~-k~GF~~~~~~ 597 (634)
||+.|+|++|+++++ .++.+.. +.+.+.|.+ ..|..+|+ .+||++|+++
T Consensus 83 ~RrlGla~kLm~qa~---------------------rAm~E~~---~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 83 YRRLGLAQKLMNQAS---------------------RAMVEVY---EAKYVSLHVRKSNRAALHLYKNTLGFVVCEVE 136 (193)
T ss_pred HHHhhHHHHHHHHHH---------------------HHHHHhh---cceEEEEeeecccHHHHHhhhhccceEEeecc
Confidence 999999999997666 5555544 667777777 35888999 8999999876
No 131
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.38 E-value=1.1e-06 Score=84.54 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=70.1
Q ss_pred EECCeEEEEEEEeeecCCC-eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCC
Q 006709 494 EREGQIIACAALFPFFKEK-CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGL 572 (634)
Q Consensus 494 ~~~g~iiG~~~l~~~~~~~-~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~ 572 (634)
|....++|-..+.+....+ ...+..+.|+.+.||+|+|+.|| +..+++++..|+
T Consensus 63 E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lM-------------------------k~~E~~~R~~gf 117 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLM-------------------------KSTEKWMREKGF 117 (225)
T ss_pred ccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHH-------------------------HHHHHHHHHhhh
Confidence 4557899999999876554 47899999999999999999999 999999999999
Q ss_pred cEEEEecHHhHHHHHhCCCeeccc
Q 006709 573 DMLFLLTTRTADWFKSRGFRECSI 596 (634)
Q Consensus 573 ~~l~l~t~~a~~~Y~k~GF~~~~~ 596 (634)
+.++|.|..-.+||+++||+.|..
T Consensus 118 ~~~yLsT~DQ~~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 118 NEAYLSTDDQCRFYESLGYEKCDP 141 (225)
T ss_pred hheeeecccchhhhhhhcccccCc
Confidence 999999987889999999999874
No 132
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.31 E-value=4.4e-06 Score=72.35 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=45.7
Q ss_pred EEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhC
Q 006709 514 GEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSR 589 (634)
Q Consensus 514 ~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~ 589 (634)
++|..++|+|+|||+|+|+.|+ ..+.+.+.+.|..- ++.+ ..++.+|+|+
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv-------------------------~~l~~~~~~~g~~~-~l~v~~~N~~s~~ly~kl 75 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALV-------------------------AALARELLERGKTP-FLYVDADNEASIRLYEKL 75 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHH-------------------------HHHHHHHHHTTSEE-EEEEETT-HHHHHHHHHC
T ss_pred cEEEEEEECHHHcCCCHHHHHH-------------------------HHHHHHHHhCCCcE-EEEEECCCHHHHHHHHHc
Confidence 7899999999999999999999 78878887777654 3333 4789999999
Q ss_pred CCeeccc
Q 006709 590 GFRECSI 596 (634)
Q Consensus 590 GF~~~~~ 596 (634)
||+.+..
T Consensus 76 Gf~~~~~ 82 (86)
T PF08445_consen 76 GFREIEE 82 (86)
T ss_dssp T-EEEEE
T ss_pred CCEEEEE
Confidence 9998753
No 133
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.31 E-value=3.6e-06 Score=64.59 Aligned_cols=62 Identities=34% Similarity=0.483 Sum_probs=52.9
Q ss_pred EEEEECCeEEEEEEEeeecC-CCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHH
Q 006709 491 YVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAAS 569 (634)
Q Consensus 491 ~V~~~~g~iiG~~~l~~~~~-~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~ 569 (634)
+++..+++++|++.+.+... .+..++..++|+|+|||+|+|++++ ..+.+.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~-------------------------~~~~~~~~~ 56 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALL-------------------------EAAEEEARE 56 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHH-------------------------HHHHHHHHH
Confidence 55667899999999986532 4678998899999999999999999 888888888
Q ss_pred cCCcEEEE
Q 006709 570 LGLDMLFL 577 (634)
Q Consensus 570 ~g~~~l~l 577 (634)
.+++.+.+
T Consensus 57 ~~~~~v~~ 64 (65)
T cd04301 57 RGAKRLRL 64 (65)
T ss_pred cCCcEEEe
Confidence 89888875
No 134
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.31 E-value=2.9e-06 Score=79.68 Aligned_cols=89 Identities=25% Similarity=0.346 Sum_probs=68.0
Q ss_pred hcCcEEEEEECCeEEEEEEEeeecCC-CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHH
Q 006709 486 ALDSFYVVEREGQIIACAALFPFFKE-KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIE 564 (634)
Q Consensus 486 ~l~~~~V~~~~g~iiG~~~l~~~~~~-~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 564 (634)
.-.++++...+|++++|+.+.|-... ....|..+.|+|++||+|+|.+|| ..+.
T Consensus 48 ~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm-------------------------~~AL 102 (155)
T COG2153 48 DTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLM-------------------------EKAL 102 (155)
T ss_pred ccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHH-------------------------HHHH
Confidence 33577777779999999999864322 225699999999999999999999 5555
Q ss_pred HHHHHc-CCcEEEEec-HHhHHHHHhCCCeecccccc
Q 006709 565 KKAASL-GLDMLFLLT-TRTADWFKSRGFRECSIEMI 599 (634)
Q Consensus 565 ~~a~~~-g~~~l~l~t-~~a~~~Y~k~GF~~~~~~~~ 599 (634)
+.+... +-+.+.+.. ...++||.++||..++.+..
T Consensus 103 ~~~~~~~p~~~v~l~AQahLq~fYa~~GFv~~~e~yl 139 (155)
T COG2153 103 ETAGREWPDKPVYLGAQAHLQDFYASFGFVRVGEEYL 139 (155)
T ss_pred HHHHhhCCCCCeEEehHHHHHHHHHHhCcEEcCchhh
Confidence 555443 355567776 56899999999999987543
No 135
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.25 E-value=1.2e-06 Score=86.33 Aligned_cols=122 Identities=17% Similarity=0.234 Sum_probs=81.4
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCC---------eEEEEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEK---------CGEVAAI 519 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~---------~~ei~~l 519 (634)
..+|..++.|+.++.+|-+.+....+... ..+++...-+..-+|..++..+|-.++....... ..+|..+
T Consensus 17 ~~l~~it~~nl~~~~~l~~~~fP~~y~~k-fy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~L 95 (187)
T KOG3138|consen 17 IELRLITPNNLKQLKQLNEDIFPISYVDK-FYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILSL 95 (187)
T ss_pred eeeccCCcchHHHHHHHhccccCcchHHH-HHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEee
Confidence 56899999999999999554433332211 1111111112222233334444444433211111 3779999
Q ss_pred EECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcC-CcEEEEec----HHhHHHHHhCCCeec
Q 006709 520 GVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLG-LDMLFLLT----TRTADWFKSRGFREC 594 (634)
Q Consensus 520 ~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g-~~~l~l~t----~~a~~~Y~k~GF~~~ 594 (634)
.|.|.||.+|||++|| +++.+.+.... ++.+++.+ ..|..||+++||+..
T Consensus 96 gvl~~yR~~gIGs~Ll-------------------------~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~ 150 (187)
T KOG3138|consen 96 GVLPRYRNKGIGSKLL-------------------------EFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIV 150 (187)
T ss_pred cccHHHHhcchHHHHH-------------------------HHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEe
Confidence 9999999999999999 99999998888 88888887 369999999999986
Q ss_pred cc
Q 006709 595 SI 596 (634)
Q Consensus 595 ~~ 596 (634)
..
T Consensus 151 ~~ 152 (187)
T KOG3138|consen 151 ER 152 (187)
T ss_pred ec
Confidence 64
No 136
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.23 E-value=5.8e-06 Score=80.86 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=83.0
Q ss_pred chHHHHHHhHHH----HH-Hcc--cCccCCHHHHHhhcCcEEEEEECC-eEEEEEEEeeecCC--CeEEEEEEEECCCCc
Q 006709 457 TDLSGIKQIIQP----LV-ESG--ALVRRTDEELLKALDSFYVVEREG-QIIACAALFPFFKE--KCGEVAAIGVSPECR 526 (634)
Q Consensus 457 ~D~~~i~~l~~~----~~-~~~--~~~~~~~~~~~~~l~~~~V~~~~g-~iiG~~~l~~~~~~--~~~ei~~l~V~p~~r 526 (634)
+|++-..+|+.. .. ... +..+.-..++...-..|+++..++ +++||+.+....+- .+.+...+-|.|.||
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR 133 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYR 133 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhh
Confidence 677777777643 11 111 211112344444445778887766 89999998743332 356777889999999
Q ss_pred CCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 527 GQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 527 gqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
|+|||+.|| +.++..+.+...+.|.|.+ .+|..||+++||.....
T Consensus 134 ~kGiGk~LL-------------------------~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~ 182 (202)
T KOG2488|consen 134 GKGIGKFLL-------------------------DTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEE 182 (202)
T ss_pred ccChHHHHH-------------------------HHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCC
Confidence 999999999 9999999888888777776 68999999999988554
No 137
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.18 E-value=7.4e-06 Score=92.80 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=66.0
Q ss_pred cEEEEE--ECCeEEEEEEEeeecC-------CCeEEEEEEE-----------ECCCCcCCCHHHHHHhhhcccccccccc
Q 006709 489 SFYVVE--REGQIIACAALFPFFK-------EKCGEVAAIG-----------VSPECRGQGQGDKLLGLCIWPLLSETRY 548 (634)
Q Consensus 489 ~~~V~~--~~g~iiG~~~l~~~~~-------~~~~ei~~l~-----------V~p~~rgqGiG~~Ll~~~i~~~~~~~~~ 548 (634)
.|.-.+ .++.++|++.+..... ..++.|..|. ++|+|||+|+|++||
T Consensus 413 ~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll------------- 479 (522)
T TIGR01211 413 FFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLL------------- 479 (522)
T ss_pred EEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHH-------------
Confidence 344444 2578999999974321 1245555555 359999999999999
Q ss_pred cccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeeccccc
Q 006709 549 DHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIEM 598 (634)
Q Consensus 549 ~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~~~ 598 (634)
+++++.|++.|++.+.+.+ ..|++||+++||+..+..|
T Consensus 480 ------------~~ae~~Ar~~G~~~i~v~s~~~A~~FY~klGf~~~g~ym 518 (522)
T TIGR01211 480 ------------EEAERIAAEEGSEKILVISGIGVREYYRKLGYELDGPYM 518 (522)
T ss_pred ------------HHHHHHHHHCCCCEEEEeeCchHHHHHHHCCCEEEccee
Confidence 9999999999999999866 5799999999999877654
No 138
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.17 E-value=5.4e-06 Score=78.76 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=87.6
Q ss_pred ccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEE-CCeEEEEEEEeee--cCCCeEEEEEEEECCCCc
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPF--FKEKCGEVAAIGVSPECR 526 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~-~g~iiG~~~l~~~--~~~~~~ei~~l~V~p~~r 526 (634)
++|+.+.+|+-..-.+--.-..+++..+....++...-+.|.+++. .++|-|++.-..- ..+-.+++.++.|.|+||
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~R 82 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYR 82 (173)
T ss_pred ccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHH
Confidence 5899999998877666332233445555566777777778888875 4788898876411 112347899999999999
Q ss_pred CCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeecc
Q 006709 527 GQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 595 (634)
Q Consensus 527 gqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~ 595 (634)
++|+|++|| +.+++-....+.--+.+.+ +-|+++|+++||...-
T Consensus 83 rl~la~~lm-------------------------~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR 130 (173)
T KOG3234|consen 83 RLGLAAKLM-------------------------DTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYR 130 (173)
T ss_pred HHHHHHHHH-------------------------HHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEE
Confidence 999999999 8888887665444444433 5699999999998743
No 139
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.08 E-value=4.8e-05 Score=75.78 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=66.6
Q ss_pred CHHHHHhhcC----cEEEEEECC--eEEEEEEEeeec------------------------------------CCCeEEE
Q 006709 479 TDEELLKALD----SFYVVEREG--QIIACAALFPFF------------------------------------KEKCGEV 516 (634)
Q Consensus 479 ~~~~~~~~l~----~~~V~~~~g--~iiG~~~l~~~~------------------------------------~~~~~ei 516 (634)
+++++...+| ..|+...++ +|+|++.+..-. .-....|
T Consensus 14 sPnDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RI 93 (196)
T PF13718_consen 14 SPNDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARI 93 (196)
T ss_dssp -HHHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEE
T ss_pred CHHHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeE
Confidence 4555554443 678888888 999999874110 0012578
Q ss_pred EEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHH-------------------------HHcC
Q 006709 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKA-------------------------ASLG 571 (634)
Q Consensus 517 ~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a-------------------------~~~g 571 (634)
-.|+|||++|++|+|++|| +.+++++ +..+
T Consensus 94 vRIAvhP~~q~~G~Gs~lL-------------------------~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 148 (196)
T PF13718_consen 94 VRIAVHPDLQRMGYGSRLL-------------------------QQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPG 148 (196)
T ss_dssp EEEEE-CCC-SSSHHHHHH-------------------------HHHHHT-----------------------------S
T ss_pred EEEEEChhhhcCCHHHHHH-------------------------HHHHHHHhhhcccccccccccccccccccccccccC
Confidence 8999999999999999999 7777777 3557
Q ss_pred CcEEEEec---HHhHHHHHhCCCeecccccchhHhhhhccCCCCceEEEeec
Q 006709 572 LDMLFLLT---TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKL 620 (634)
Q Consensus 572 ~~~l~l~t---~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~~~s~~~~k~l 620 (634)
++.+-..- ....+||.|.||...-...-+++. -..-|.+++|.|
T Consensus 149 vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~~~n~~-----SGe~S~imlr~l 195 (196)
T PF13718_consen 149 VDYLGTSFGATPELLKFWQKNGFVPVYLGQTRNEA-----SGEHSAIMLRPL 195 (196)
T ss_dssp -SEEEEEEE--HHHHHHHHCTT-EEEEE-SS--TT-----T---EEEEEEE-
T ss_pred CCEEEeccCCCHHHHHHHHHCCcEEEEEecCcccc-----cCceeeeEEeec
Confidence 77654332 568899999999997765444321 123455666765
No 140
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.06 E-value=1.6e-05 Score=81.72 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=61.5
Q ss_pred EEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCC
Q 006709 493 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGL 572 (634)
Q Consensus 493 ~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~ 572 (634)
.+.+|+||+.+... .....++.|..++++|+|||+|+++.|+ ..+-...-..|.
T Consensus 182 ~~~d~~iVa~A~t~-a~~~~~~~I~gV~T~peyR~kGyAt~lv-------------------------a~L~~~lL~eGk 235 (268)
T COG3393 182 LEGDGKIVAKAETA-AENPAYAQINGVYTHPEYRGKGYATALV-------------------------ATLAAKLLAEGK 235 (268)
T ss_pred EccCCcEEEeeecc-ccCCcceEEEEEEcCHHHccccHHHHHH-------------------------HHHHHHHHhCCC
Confidence 34456999999887 3456789999999999999999999999 666666555565
Q ss_pred c-EEEEec--HHhHHHHHhCCCeeccc
Q 006709 573 D-MLFLLT--TRTADWFKSRGFRECSI 596 (634)
Q Consensus 573 ~-~l~l~t--~~a~~~Y~k~GF~~~~~ 596 (634)
+ .++..+ +.|.+.|++.||+..+.
T Consensus 236 ~~~L~~~~~N~~A~~iY~riGF~~~g~ 262 (268)
T COG3393 236 IPCLFVNSDNPVARRIYQRIGFREIGE 262 (268)
T ss_pred eeEEEEecCCHHHHHHHHHhCCeecce
Confidence 4 455533 56899999999999773
No 141
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.01 E-value=3.4e-05 Score=79.91 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=88.5
Q ss_pred ccccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEEC-CeEEEEEEEeeecCCCeEEEEEEEECCCCc
Q 006709 448 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVERE-GQIIACAALFPFFKEKCGEVAAIGVSPECR 526 (634)
Q Consensus 448 Ye~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~~-g~iiG~~~l~~~~~~~~~ei~~l~V~p~~r 526 (634)
|..++...++|...+.++-+-+..++.. +...++.+.++..+ ++||+|..+.-. -|.+++|+|.+|
T Consensus 3 ~~~~~~v~~~e~~k~~~i~~fL~~~~l~-------~d~~ve~~v~~~~~~~~iiacGsiaGn------vikcvAvs~s~q 69 (352)
T COG3053 3 NYTFSRVKRSEKKKMAEIAEFLHQNDLR-------VDTTVEYFVAIYRDNEEIIACGSIAGN------VIKCVAVSESLQ 69 (352)
T ss_pred ceEEEEEccchhhHHHHHHHHHhhcCce-------ecccceEEEEEEcCCCcEEEecccccc------eeEEEEechhcc
Confidence 4456777778888888875555555442 33446667766665 999999988732 378999999999
Q ss_pred CCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeeccc
Q 006709 527 GQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 596 (634)
Q Consensus 527 gqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~ 596 (634)
|-|+.-+|+ .++.+.+.++|...+|+.| +....||+.+||.+...
T Consensus 70 GeGl~lkl~-------------------------TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i~~ 115 (352)
T COG3053 70 GEGLALKLV-------------------------TELINLAYERGRTHLFIYTKPEYAALFKQCGFSEIAS 115 (352)
T ss_pred cccHHHHHH-------------------------HHHHHHHHHcCCceEEEEechhHHHHHHhCCceEeec
Confidence 999999999 9999999999999999999 56788999999998653
No 142
>PRK09181 aspartate kinase; Validated
Probab=97.92 E-value=0.00037 Score=78.49 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=64.4
Q ss_pred HHHHHHHHc----CCcEEEEcCCccCCCCceeee---chHHHHHHHHHHcCCCEEEEeeccccc--C------CCCcccc
Q 006709 241 VTRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL--D------ESGHLIR 305 (634)
Q Consensus 241 ~~~I~~LLd----~G~IPVv~~v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgl--d------~~gklI~ 305 (634)
.+.++..++ .+.|||+.+...+..|++..+ -+|..|+.+|.+|+||.+.+-|||+.+ | +++++|+
T Consensus 182 ~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~I~taDPriV~~~~A~~i~ 261 (475)
T PRK09181 182 DERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYHLSSADPKLVGEDKVVPIG 261 (475)
T ss_pred HHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCccccCCCCcCCCCCCeEcC
Confidence 355666555 478999999765667887765 589999999999999999999999733 3 4688999
Q ss_pred ccCHHHHHHHHHhhc
Q 006709 306 FLTLQEADSLIRQRV 320 (634)
Q Consensus 306 ~ls~~e~~~li~~~~ 320 (634)
+|+.+|+.+|..-|+
T Consensus 262 ~lsy~Ea~ELA~~GA 276 (475)
T PRK09181 262 RTNYDVADQLANLGM 276 (475)
T ss_pred ccCHHHHHHHHHcCc
Confidence 999999999865543
No 143
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.00016 Score=68.57 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=62.7
Q ss_pred CeEEEEEEEeeecC---CCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH-HcCC
Q 006709 497 GQIIACAALFPFFK---EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA-SLGL 572 (634)
Q Consensus 497 g~iiG~~~l~~~~~---~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~-~~g~ 572 (634)
+++||++.+..... ...+++ ...++|+|+|||+|+..+ ..+.+++. ..++
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~i-g~~l~~~~~g~G~~tea~-------------------------~~~l~~~f~~~~l 130 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEI-GYWLDPEYWGKGYATEAL-------------------------RALLDYAFEELGL 130 (187)
T ss_pred CeEEEEEEEEEeccccccceEEE-EEEEChHHhcCchHHHHH-------------------------HHHHHHhhhhcCc
Confidence 58999999987652 556777 777899999999999999 66666653 5899
Q ss_pred cEEEEec----HHhHHHHHhCCCeeccccc
Q 006709 573 DMLFLLT----TRTADWFKSRGFRECSIEM 598 (634)
Q Consensus 573 ~~l~l~t----~~a~~~Y~k~GF~~~~~~~ 598 (634)
.+|.+.+ .++++.++|+||+..+...
T Consensus 131 ~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~ 160 (187)
T COG1670 131 HRIEATVDPENEASIRVYEKLGFRLEGELR 160 (187)
T ss_pred eEEEEEecCCCHHHHHHHHHcCChhhhhhh
Confidence 9999988 5799999999999987643
No 144
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=97.91 E-value=0.00012 Score=62.51 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=56.4
Q ss_pred EEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcC
Q 006709 492 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLG 571 (634)
Q Consensus 492 V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g 571 (634)
.+..+|+.+|++.+.. .++...|....|.|++||||+|++|+ +.+.+++++.|
T Consensus 3 ~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~-------------------------~~~l~~a~~~~ 55 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLV-------------------------EAALDYARENG 55 (78)
T ss_dssp EEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHH-------------------------HHHHHHHHHTT
T ss_pred EEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHH-------------------------HHHHHHHHHCC
Confidence 3445688999999874 66788899999999999999999999 99999999988
Q ss_pred CcEEEEecHHhHHHHHhC
Q 006709 572 LDMLFLLTTRTADWFKSR 589 (634)
Q Consensus 572 ~~~l~l~t~~a~~~Y~k~ 589 (634)
.+ |...+.-+..|++++
T Consensus 56 ~k-v~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 56 LK-VVPTCSYVAKYFRRH 72 (78)
T ss_dssp -E-EEETSHHHHHHHHH-
T ss_pred CE-EEEECHHHHHHHHhC
Confidence 65 456777788888774
No 145
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=97.87 E-value=0.00047 Score=73.06 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=59.1
Q ss_pred CCcEEEEcCCccCCCCceeee---chHHHHHHHHHHcCCCEEEEeeccccc--C------CCCccccccCHHHHHHHHHh
Q 006709 250 GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL--D------ESGHLIRFLTLQEADSLIRQ 318 (634)
Q Consensus 250 ~G~IPVv~~v~~~~~Gei~ni---d~D~lAa~LA~aL~AdkLI~LTDVdgl--d------~~gklI~~ls~~e~~~li~~ 318 (634)
.+.|||+.+.+.+.+|++..+ -+|..|+.||.+|+|+.+.+-|||+.. | +++++|++++.+|+.+|..-
T Consensus 189 ~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~i~taDPriV~~~~A~~i~~lsY~EA~ELA~~ 268 (304)
T cd04248 189 RDELPIVTGYAKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFHLSSADPKLVGEDKARPIGRTNYDVADQLANL 268 (304)
T ss_pred CCcEEEeCCccCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCceecCCCCccCCCCceEeCccCHHHHHHHHHc
Confidence 578999999866667887765 589999999999999999999999733 3 36789999999999998654
Q ss_pred hc
Q 006709 319 RV 320 (634)
Q Consensus 319 ~~ 320 (634)
|+
T Consensus 269 Ga 270 (304)
T cd04248 269 GM 270 (304)
T ss_pred Ch
Confidence 43
No 146
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=97.63 E-value=0.00049 Score=66.71 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=65.8
Q ss_pred cEEEEEECCeEEEEEEEeeecCC----CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHH
Q 006709 489 SFYVVEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIE 564 (634)
Q Consensus 489 ~~~V~~~~g~iiG~~~l~~~~~~----~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~ 564 (634)
.||.+..|++++|++.+.....+ ..++| .-.|.|+.||+|+|+.+| ..+.
T Consensus 70 ~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emL-------------------------kl~L 123 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEML-------------------------KLAL 123 (174)
T ss_pred eEEEEecCCcEEEEEEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHH-------------------------HHHH
Confidence 45555567999999999743222 24677 678999999999999999 9999
Q ss_pred HHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 565 KKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 565 ~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
++|+++|++.|.+.+ ..+++--+++|=...++
T Consensus 124 ~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~ 159 (174)
T COG3981 124 EKARELGIKKVLVTCDKDNIASRKVIEANGGILENE 159 (174)
T ss_pred HHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEEeEE
Confidence 999999999999988 35777888888766554
No 147
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.57 E-value=0.00066 Score=79.35 Aligned_cols=132 Identities=20% Similarity=0.231 Sum_probs=86.9
Q ss_pred chHHHHHHhHHHHHHcccCccCCHHHHHhhcC----cEEEEEECC-eEEEEEEEeeecCC--------------------
Q 006709 457 TDLSGIKQIIQPLVESGALVRRTDEELLKALD----SFYVVEREG-QIIACAALFPFFKE-------------------- 511 (634)
Q Consensus 457 ~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~----~~~V~~~~g-~iiG~~~l~~~~~~-------------------- 511 (634)
.|-+.+.++|.-++..++- -++.++...++ +++++..++ ++++++.+.. .+.
T Consensus 437 ~~ee~Lr~~~gllV~AHYR--nsP~DL~~L~DaP~h~~~al~~~~~~~va~~qva~-EG~l~~~~i~~~~~g~r~~GnlI 513 (758)
T COG1444 437 FDEELLRQVYGLLVSAHYR--NSPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAE-EGGLSDELIDIWLGGRRPRGNLI 513 (758)
T ss_pred hCHHHHHHHHhHHhhhhcc--CCHHHHHHHhcCCCCeeEEEEcCCCceEEEEEeec-cCCCcHHHHHHHhcCCCCCCccc
Confidence 3444445555545555442 35556655553 688888766 7777777631 100
Q ss_pred ----------------CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEE
Q 006709 512 ----------------KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDML 575 (634)
Q Consensus 512 ----------------~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l 575 (634)
....|-.|+|||++|++|||++|| +.+.++|+ .+++-+
T Consensus 514 p~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q~~GiGsrlL-------------------------~~l~~~a~-~~~Dwl 567 (758)
T COG1444 514 PDLLAKHHRDPEFAKLVGWRIVRIAVHPELQRMGIGSRLL-------------------------ALLIEEAR-KGLDWL 567 (758)
T ss_pred HHHHHHhhcchhhcccceeeEEEEEeCHHHHhcCHHHHHH-------------------------HHHHHHHh-cCCCEE
Confidence 114678999999999999999999 88888885 567765
Q ss_pred EEec---HHhHHHHHhCCCeecccccchhHhhhhccCC--CCceEEEeecCCCC
Q 006709 576 FLLT---TRTADWFKSRGFRECSIEMIPEERRKRINLS--RNSKYYMKKLLPDT 624 (634)
Q Consensus 576 ~l~t---~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~--~~s~~~~k~l~~~~ 624 (634)
-..- ....+|+.++||.+..+..-- |.+ --|.+++|.|++..
T Consensus 568 gvsFG~t~~L~rFW~rnGF~pVhls~~r-------n~~SGeys~i~lkpLs~~~ 614 (758)
T COG1444 568 GVSFGYTEELLRFWLRNGFVPVHLSPTR-------NASSGEYTAIVLKPLSDAG 614 (758)
T ss_pred eeccCCCHHHHHHHHHcCeEEEEecCcc-------CcCCCceeEEEEecCCHHH
Confidence 4433 568899999999997654322 222 34666778887543
No 148
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.39 E-value=0.0024 Score=59.28 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=66.2
Q ss_pred cccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcC
Q 006709 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRG 527 (634)
Q Consensus 451 iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l---~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rg 527 (634)
+-.++++|.-.+..|+ ...+.+.+...+ ..+|++.-+++++|.+.+.. ....++|..|+|+|--|+
T Consensus 7 l~~ls~Qd~iDL~KIw---------p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~--~~~~~~L~~l~VRevTRr 75 (128)
T PF12568_consen 7 LTTLSEQDRIDLAKIW---------PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTI--SGQQAELSDLCVREVTRR 75 (128)
T ss_dssp -SS--HHHHHHHHHH----------TTS----------SSEEEEEEEETTEEEEEEEEEE--ETTEEEEEEEEE-TT-SS
T ss_pred cCCCCHHHHHHHHHhC---------CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEE--cCcceEEeeEEEeecccc
Confidence 3456778888888885 122334444444 47999999999999999984 457899999999999999
Q ss_pred CCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecH--------HhHHHHHhCCCeecc
Q 006709 528 QGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTT--------RTADWFKSRGFRECS 595 (634)
Q Consensus 528 qGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~--------~a~~~Y~k~GF~~~~ 595 (634)
+|+|..|+ +.+...+ -.++...+... ....|...+||...+
T Consensus 76 RGVG~yLl-------------------------ee~~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 76 RGVGLYLL-------------------------EEVLRQL--PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp SSHHHHHH-------------------------HHHHHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred ccHHHHHH-------------------------HHHHHHC--CCCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 99999999 6666655 34555555442 245689999996643
No 149
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.26 E-value=0.00099 Score=59.45 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=56.8
Q ss_pred CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHH
Q 006709 488 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKA 567 (634)
Q Consensus 488 ~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a 567 (634)
..+|+...+|+.+|.+..++ .++....|.+-+|+|++||||+|++|+ ..+.+.|
T Consensus 15 ~~~y~~~~~G~~~~e~~y~~-~~~~~i~i~HT~V~d~lrGqGia~~L~-------------------------~~al~~a 68 (99)
T COG2388 15 NGRYVLTDEGEVIGEATYYD-RGENLIIIDHTYVPDELRGQGIAQKLV-------------------------EKALEEA 68 (99)
T ss_pred ceEEEEecCCcEEEEEEEec-CCCCEEEEecCcCCHHHcCCcHHHHHH-------------------------HHHHHHH
Confidence 57899999999999998884 355778899999999999999999999 8999999
Q ss_pred HHcCCcEEEEec
Q 006709 568 ASLGLDMLFLLT 579 (634)
Q Consensus 568 ~~~g~~~l~l~t 579 (634)
++.|.+-+-+..
T Consensus 69 r~~g~kiiP~Cs 80 (99)
T COG2388 69 REAGLKIIPLCS 80 (99)
T ss_pred HHcCCeEcccch
Confidence 999987655444
No 150
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=97.22 E-value=0.0009 Score=65.47 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCcccccccc-ccccccCccc-hHHHHHHhHHHHHHcccCccCCHHHHHhhcCcEEEEEECCeEEEEEEEe
Q 006709 429 LLLELFKRDGMGTMVASDL-YEGTRTAKVT-DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF 506 (634)
Q Consensus 429 ll~el~~~~g~GT~I~~D~-Ye~iR~a~~~-D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~ 506 (634)
|..||||..|.||+|.+-. .........- |.+.|.+++.........+....+.+...+...|+ +|..-|.+.+.
T Consensus 2 L~kELFt~sgagTlirrG~~i~~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~---d~~y~~~AIVt 78 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGYKILKHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYV---DEDYEGAAIVT 78 (170)
T ss_dssp HHHHHHSSSTSSEEEE----EEEESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEE---ETTSSEEEEEE
T ss_pred ccchhcCCCCCceEEecCeeeEEecCccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEE---eCCceEEEEEE
Confidence 6789999999999997643 2344555555 99999999765442222233233333333333333 34455566664
Q ss_pred e---ecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec---H
Q 006709 507 P---FFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT---T 580 (634)
Q Consensus 507 ~---~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t---~ 580 (634)
+ ......++|..++|.|..||.|++..+. ..|.+.. ..|++.+ .
T Consensus 79 ~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf-------------------------~~i~~d~-----p~L~Wrsr~~n 128 (170)
T PF04768_consen 79 PEGPDSNGPVPYLDKFAVSKSAQGSGVADNVF-------------------------NAIRKDF-----PKLFWRSREDN 128 (170)
T ss_dssp EE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHH-------------------------HHHHHH------SSEEEEEETT-
T ss_pred ecCCCCCCCCeEEEEEEecchhhhcCHHHHHH-------------------------HHHHHhc-----cceEEEecCCC
Confidence 3 2334579999999999999999999999 7776655 3466666 4
Q ss_pred HhHHHHHh
Q 006709 581 RTADWFKS 588 (634)
Q Consensus 581 ~a~~~Y~k 588 (634)
+...||-+
T Consensus 129 ~~~~Wyf~ 136 (170)
T PF04768_consen 129 PNNKWYFE 136 (170)
T ss_dssp TTHHHHHH
T ss_pred CcccEEEE
Confidence 56788753
No 151
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=97.21 E-value=0.00021 Score=67.87 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=77.7
Q ss_pred cccccCccchHHHHHHhHHHHHHcccCcc-C-CHHHHHhhcC------cEEEE-------EECCeEEEEEEEeeecCC--
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGALVR-R-TDEELLKALD------SFYVV-------EREGQIIACAALFPFFKE-- 511 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~~~-~-~~~~~~~~l~------~~~V~-------~~~g~iiG~~~l~~~~~~-- 511 (634)
..||+.-++|.+++..| ...++..+ + +.+-+.+.+- .-+.. ..++.+||.+.-.....+
T Consensus 12 ~~irp~i~e~~q~~~~L----ea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~E~l 87 (190)
T KOG4144|consen 12 PRIRPGIPESCQRRHTL----EASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDKERL 87 (190)
T ss_pred ccCCCCChHHHHHHhcc----ccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcchhh
Confidence 45899999998888877 33344311 1 1122222221 11111 126788888765433222
Q ss_pred ------------CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec
Q 006709 512 ------------KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT 579 (634)
Q Consensus 512 ------------~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t 579 (634)
....|.+++|+|+||.||.|..|| .+|++..+.+--..++.|.+
T Consensus 88 t~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll------------------------~~ylq~l~~q~i~~r~~Li~ 143 (190)
T KOG4144|consen 88 TQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILL------------------------WRYLQHLGSQPIVRRAALIC 143 (190)
T ss_pred hHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHH------------------------HHHHHHhhcCccccceeeee
Confidence 226789999999999999999999 26677776544444555555
Q ss_pred -HHhHHHHHhCCCeeccccc
Q 006709 580 -TRTADWFKSRGFRECSIEM 598 (634)
Q Consensus 580 -~~a~~~Y~k~GF~~~~~~~ 598 (634)
.....||++.||+..+...
T Consensus 144 h~pLvPFYEr~gFk~vgp~~ 163 (190)
T KOG4144|consen 144 HDPLVPFYERFGFKAVGPCA 163 (190)
T ss_pred cCCccchhHhcCceeecccc
Confidence 6788999999999877633
No 152
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.02 E-value=0.001 Score=54.68 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=39.2
Q ss_pred EEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCC
Q 006709 519 IGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGF 591 (634)
Q Consensus 519 l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF 591 (634)
++|+|+|||+|+|++|+ +.+.+.++..|+. ....+..+|.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll-------------------------~~~~~~~~~~g~~----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALL-------------------------EAALEWARKRGIS----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHH-------------------------HHHHHHHHHcCce----ehHHHHHHHHhcCC
Confidence 89999999999999999 8899999888876 44567889999999
No 153
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.90 E-value=0.0086 Score=62.60 Aligned_cols=90 Identities=20% Similarity=0.239 Sum_probs=61.9
Q ss_pred CHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcc
Q 006709 479 TDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPF 558 (634)
Q Consensus 479 ~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~ 558 (634)
+.+++.+. ..-|++..+|+||+-|.-. +..+...|| .|.++|+|||||+++.+-
T Consensus 157 s~e~Fl~~-G~Gf~i~~~~~iVs~~~s~-~~~~~~~EI-~I~T~~~yR~kGLA~~~a----------------------- 210 (265)
T PF12746_consen 157 SYEDFLKN-GFGFCILHDGEIVSGCSSY-FVYENGIEI-DIETHPEYRGKGLATAVA----------------------- 210 (265)
T ss_dssp SHHHHHHH---EEEEEETTEEEEEEEEE-EEETTEEEE-EEEE-CCCTTSSHHHHHH-----------------------
T ss_pred CHHHHHhc-CcEEEEEECCEEEEEEEEE-EEECCEEEE-EEEECHHhhcCCHHHHHH-----------------------
Confidence 45555444 3456677788887644333 234566888 899999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeeccc
Q 006709 559 LRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 596 (634)
Q Consensus 559 ~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~ 596 (634)
..+...|.+.|+.-.+-.. ..+.++=+|+||+....
T Consensus 211 --a~~I~~Cl~~~l~P~WDc~N~~S~~lA~kLGf~~~~~ 247 (265)
T PF12746_consen 211 --AAFILECLENGLYPSWDCHNLASIALAEKLGFHFDFE 247 (265)
T ss_dssp --HHHHHHHHHTT-EEE-EESSHHHHHHHHHCT--EEEE
T ss_pred --HHHHHHHHHCCCCcCeeCCCHHHHHHHHHcCCcccce
Confidence 8888889898987755433 56889999999987554
No 154
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=96.76 E-value=0.011 Score=63.78 Aligned_cols=146 Identities=20% Similarity=0.347 Sum_probs=71.8
Q ss_pred ccccCccchHHHHHHhHHHHHHccc-CccCCHHHHHhhc----------------C--cEEEEEE--CCeEEEEEEEe--
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKAL----------------D--SFYVVER--EGQIIACAALF-- 506 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~-~~~~~~~~~~~~l----------------~--~~~V~~~--~g~iiG~~~l~-- 506 (634)
.|||++.+|+++|.+|-+..- .++ ..+.+.+.+.+.+ + .++|.|+ .|+|+|++.+.
T Consensus 3 viRp~~~~Dl~aL~~LA~~sg-~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a~ 81 (342)
T PF04958_consen 3 VIRPARPSDLDALYALARESG-PGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEAA 81 (342)
T ss_dssp EEEE--GGGHHHHHHHHHHS--TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEESS
T ss_pred EEecCchhhHHHHHHHHHHcC-CCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEec
Confidence 589999999999999954211 111 2344555554444 1 4677785 59999999873
Q ss_pred -----eec----------------------------CCCeEEEEEEEECCCCcCCCHHHHHHhhhccccccccccccccc
Q 006709 507 -----PFF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST 553 (634)
Q Consensus 507 -----~~~----------------------------~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~ 553 (634)
||+ -..+.||..|+++|+||+-|.|+.|- .+-
T Consensus 82 vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLS-r~R-------------- 146 (342)
T PF04958_consen 82 VGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLS-RSR-------------- 146 (342)
T ss_dssp TTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHH-HHH--------------
T ss_pred cCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHH-HHH--------------
Confidence 111 12347999999999999999998776 111
Q ss_pred CCCcchHHHHHHHHHHcCCcEEEEec------HHhHHHHHhCCCeecccccchhHhhhhccCCC-CceEEEeecCCC
Q 006709 554 NGFPFLRDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSIEMIPEERRKRINLSR-NSKYYMKKLLPD 623 (634)
Q Consensus 554 ~~~~~~~~~i~~~a~~~g~~~l~l~t------~~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~~-~s~~~~k~l~~~ 623 (634)
=-......+.=-++|..+. ...-.||+..|=+-.+...-..+. ++. .+|-++..|-|.
T Consensus 147 -------fLFiA~~~~rF~~~viAElrG~~De~G~SPFWdalG~~FF~mdF~eAD~-----Lsg~~~k~FIaeLMP~ 211 (342)
T PF04958_consen 147 -------FLFIAQHRERFADRVIAELRGVSDEDGRSPFWDALGRHFFDMDFQEADY-----LSGIGNKQFIAELMPR 211 (342)
T ss_dssp -------HHHHHH-GGGS-SEEEEE--B---TT---HHHHHTGGGTS---HHHHHH-----HHHH------------
T ss_pred -------HHHHHhChhhcchheeeeccCCcCCCCCCchHHHhhccccCCCHHHHHH-----HHcCCcchHHHHhCCC
Confidence 1222233444557788777 235668888886665543222221 222 455666666554
No 155
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=96.73 E-value=0.0014 Score=60.71 Aligned_cols=124 Identities=20% Similarity=0.237 Sum_probs=87.4
Q ss_pred ccccCccchHHHHHHhHHHHHHcccCc-cCCHHHHHhhcCcEEEEEECCeEEEEEEEeee-----------c---CCCeE
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESGALV-RRTDEELLKALDSFYVVEREGQIIACAALFPF-----------F---KEKCG 514 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~~~g~iiG~~~l~~~-----------~---~~~~~ 514 (634)
.+|.....|...+..+-+. ..... ....+.+...+...|+++++|.+.|+..-+.. + -+...
T Consensus 9 ~~~D~~apd~aavLaLNNe---ha~elswLe~erL~~l~~eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe~F~ 85 (167)
T COG3818 9 LIRDVRAPDLAAVLALNNE---HALELSWLELERLYRLYKEAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYENFF 85 (167)
T ss_pred ehhhhcCCchhhHHhccch---hhhhccccCHHHHHHHHHHHHHHhhccchhhheeeccccccCCCCceeehhhhCCceE
Confidence 3555566688777777431 11111 22455555555555688888887777654311 1 12347
Q ss_pred EEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecH------HhHHHHHh
Q 006709 515 EVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTT------RTADWFKS 588 (634)
Q Consensus 515 ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~------~a~~~Y~k 588 (634)
+|..+.|....||.|+|+.|. +.+.+.|+..|...+..++. .+..|.-.
T Consensus 86 YvDRvVVA~~aRGrG~aRalY-------------------------~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaa 140 (167)
T COG3818 86 YVDRVVVASRARGRGVARALY-------------------------ADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAA 140 (167)
T ss_pred EEEEEEEEecccccchHHHHH-------------------------HHHHHHHHhcCCceEEEEecCCCCChHHHHHhhh
Confidence 899999999999999999999 99999999999999888872 35557789
Q ss_pred CCCeecccccchh
Q 006709 589 RGFRECSIEMIPE 601 (634)
Q Consensus 589 ~GF~~~~~~~~~~ 601 (634)
+||.+.+...+..
T Consensus 141 lGF~eVG~a~ihg 153 (167)
T COG3818 141 LGFHEVGQATIHG 153 (167)
T ss_pred cCceEccceEEec
Confidence 9999999866653
No 156
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.017 Score=62.51 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=54.5
Q ss_pred CCcEEEEcCC-c-cCCCCcee---eechHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccCHHHHHHHHH
Q 006709 250 GGCLVILSNL-G-YSSSGEVL---NCNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (634)
Q Consensus 250 ~G~IPVv~~v-~-~~~~Gei~---nid~D~lAa~LA~aL~AdkLI~LTDVdgl---d----~~gklI~~ls~~e~~~li~ 317 (634)
.+.|||+.+. + .-.+|-+. -+-+|..|+.+|.+|++|.+-+-.||||+ | |.+++++.++.+|+.+|.-
T Consensus 258 en~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaY 337 (559)
T KOG0456|consen 258 ENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAY 337 (559)
T ss_pred CCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHh
Confidence 4679999863 4 22333322 34689999999999999999999999997 3 5799999999999988754
Q ss_pred hh
Q 006709 318 QR 319 (634)
Q Consensus 318 ~~ 319 (634)
-|
T Consensus 338 fG 339 (559)
T KOG0456|consen 338 FG 339 (559)
T ss_pred hh
Confidence 33
No 157
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=96.41 E-value=0.0045 Score=66.14 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=68.8
Q ss_pred CcEEEEEECCeEEEEEEEeeec---CC---CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHH
Q 006709 488 DSFYVVEREGQIIACAALFPFF---KE---KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRD 561 (634)
Q Consensus 488 ~~~~V~~~~g~iiG~~~l~~~~---~~---~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~ 561 (634)
..++|...+.++++.....||. +. +.+.|..+++.|+|||+|.-++|| .
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll-------------------------~ 93 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALL-------------------------A 93 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHH-------------------------H
Confidence 4789999999999988887642 22 347889999999999999999999 8
Q ss_pred HHHHHHHHcCCcEEEEecHHhHHHHHhCCCeeccc
Q 006709 562 YIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 596 (634)
Q Consensus 562 ~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~ 596 (634)
+..+..++.|+.-.+|.. -...||+|.||...+.
T Consensus 94 ~sLre~~~kG~p~s~L~P-~s~~iYrKfGye~asn 127 (389)
T COG4552 94 HSLREIARKGYPVSALHP-FSGGIYRKFGYEYASN 127 (389)
T ss_pred HHHHHHHHcCCeeEEecc-CchhhHhhccccccce
Confidence 888888899988766654 5688999999998764
No 158
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.35 E-value=0.01 Score=63.72 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=57.8
Q ss_pred cccCccchHHHHHHhHHHHHHcc---cCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEe---
Q 006709 451 TRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALF--- 506 (634)
Q Consensus 451 iR~a~~~D~~~i~~l~~~~~~~~---~~~~~~~~~~~~~l----------------~~~~V~~~--~g~iiG~~~l~--- 506 (634)
|||++.+|+++|.+|-. ..+ ...+.+.+.+.+.+ ..+||.|+ .|+|+|++.+.
T Consensus 2 vRPv~~~Dl~aL~~LA~---~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~v 78 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQ---STGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAV 78 (336)
T ss_pred cccCccccHHHHHHHHH---HcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecc
Confidence 79999999999999843 333 22455555555554 15677775 59999999873
Q ss_pred ----eec----------------------------CCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 507 ----PFF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 507 ----~~~----------------------------~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
||+ -..+.||..|+++|+||+-|.|+.|=
T Consensus 79 G~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLS 139 (336)
T TIGR03244 79 GLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLS 139 (336)
T ss_pred cCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHH
Confidence 211 01236899999999999999887654
No 159
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.18 E-value=0.012 Score=63.07 Aligned_cols=82 Identities=20% Similarity=0.408 Sum_probs=56.9
Q ss_pred cccCccchHHHHHHhHHHHHHcc---cCccCCHHHHHhhc-----------------CcEEEEEE--CCeEEEEEEEe--
Q 006709 451 TRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL-----------------DSFYVVER--EGQIIACAALF-- 506 (634)
Q Consensus 451 iR~a~~~D~~~i~~l~~~~~~~~---~~~~~~~~~~~~~l-----------------~~~~V~~~--~g~iiG~~~l~-- 506 (634)
|||++.+|+++|.+|-. ..+ ...+.+.+.+.+.+ ..+||.|+ .|+|+|++.+.
T Consensus 2 iRpv~~~Dl~aL~~LA~---~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~ 78 (336)
T TIGR03245 2 VRPSRFADLPAIERLAN---ESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVAS 78 (336)
T ss_pred cccCccccHHHHHHHHH---HcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEec
Confidence 79999999999999843 333 12444555554444 15677775 59999999873
Q ss_pred -----eec----------------------------CCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 507 -----PFF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 507 -----~~~----------------------------~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
||+ -..+.||..|+++|+||+-|.|+.|=
T Consensus 79 vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLS 140 (336)
T TIGR03245 79 AGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLS 140 (336)
T ss_pred ccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHH
Confidence 211 01236899999999999999887654
No 160
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.16 E-value=0.086 Score=47.88 Aligned_cols=64 Identities=23% Similarity=0.126 Sum_probs=53.6
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH
Q 006709 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA 568 (634)
Q Consensus 489 ~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 568 (634)
.++++..+|++||++.... .....+.....++|+|+..+.|..|+ ..+.++|.
T Consensus 72 ~l~~~~~~g~~va~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~l~-------------------------~~~i~~a~ 124 (142)
T PF13480_consen 72 RLFVLYDGGEPVAFALGFR--HGGTLYYWYGGYDPEYRKYSPGRLLL-------------------------WEAIRWAI 124 (142)
T ss_pred EEEEEEECCEEEEEEEEEE--ECCEEEEEEEEECHhhHhCCHHHHHH-------------------------HHHHHHHH
Confidence 5677888999999987763 34566777888999999999999999 88889999
Q ss_pred HcCCcEEEEec
Q 006709 569 SLGLDMLFLLT 579 (634)
Q Consensus 569 ~~g~~~l~l~t 579 (634)
+.|++.+-+..
T Consensus 125 ~~g~~~~d~g~ 135 (142)
T PF13480_consen 125 ERGLRYFDFGG 135 (142)
T ss_pred HCCCCEEEECC
Confidence 99998887665
No 161
>PRK10456 arginine succinyltransferase; Provisional
Probab=96.12 E-value=0.012 Score=63.31 Aligned_cols=83 Identities=20% Similarity=0.414 Sum_probs=58.7
Q ss_pred ccccCccchHHHHHHhHHHHHHcc---cCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEe--
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALF-- 506 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~~---~~~~~~~~~~~~~l----------------~~~~V~~~--~g~iiG~~~l~-- 506 (634)
.|||++.+|+++|.+|-+ ..+ ...+.+.+.+.+.+ ..+||.|+ .|+|+|++.+.
T Consensus 3 vvRpv~~~Dl~aL~~LA~---~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~ 79 (344)
T PRK10456 3 VIRPVERSDLAALMQLAG---KTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVA 79 (344)
T ss_pred EEecCccccHHHHHHHHH---HcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEec
Confidence 589999999999999943 333 22455556555554 15677775 59999999873
Q ss_pred -----eec----------------------------CCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 507 -----PFF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 507 -----~~~----------------------------~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
||+ -..+.||..|+++|+||+-|.|+.|=
T Consensus 80 vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLS 141 (344)
T PRK10456 80 VGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLS 141 (344)
T ss_pred ccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHH
Confidence 211 01236899999999999999887654
No 162
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.08 E-value=0.015 Score=62.39 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=56.3
Q ss_pred cccCccchHHHHHHhHHHHHHcc---cCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEe---
Q 006709 451 TRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALF--- 506 (634)
Q Consensus 451 iR~a~~~D~~~i~~l~~~~~~~~---~~~~~~~~~~~~~l----------------~~~~V~~~--~g~iiG~~~l~--- 506 (634)
|||++.+|+++|.+|-+ ..+ ...+.+.+.+.+.+ ..+||.|+ .|+|+|++.+.
T Consensus 2 vRpv~~~Dl~aL~~LA~---~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~v 78 (335)
T TIGR03243 2 VRPVRTSDLDALMQLAR---ESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAV 78 (335)
T ss_pred cccCccccHHHHHHHHH---HcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecc
Confidence 79999999999999843 233 12344444444443 14667775 59999999873
Q ss_pred ----eec----------------------------CCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 507 ----PFF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 507 ----~~~----------------------------~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
||+ -..+.||..|+++|+||+-|.|+.|=
T Consensus 79 G~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLS 139 (335)
T TIGR03243 79 GLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLS 139 (335)
T ss_pred cCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHH
Confidence 211 01236899999999999999887654
No 163
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=95.75 E-value=0.078 Score=54.72 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=61.7
Q ss_pred cEEEEEE-CCeEEEEEEEeeec-----------------------------CCCeEEEEEEEECCCCcCC--------C-
Q 006709 489 SFYVVER-EGQIIACAALFPFF-----------------------------KEKCGEVAAIGVSPECRGQ--------G- 529 (634)
Q Consensus 489 ~~~V~~~-~g~iiG~~~l~~~~-----------------------------~~~~~ei~~l~V~p~~rgq--------G- 529 (634)
++++... +|++|||+.+.|.. .....|+..++|+|+||++ |
T Consensus 57 h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~ 136 (241)
T TIGR03694 57 HSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGV 136 (241)
T ss_pred EEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccc
Confidence 4444433 58999999987520 0234799999999999974 2
Q ss_pred -------------------HHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhC
Q 006709 530 -------------------QGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSR 589 (634)
Q Consensus 530 -------------------iG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~ 589 (634)
+...|+ ..+.+.|.+.|++.++..+ ....+++++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~L~-------------------------~~~~~~a~~~Gi~~~~~v~~~~l~r~l~r~ 191 (241)
T TIGR03694 137 GVIETEAPFSESERRRFPHIPLGLY-------------------------LGLIALSSANGITHWYAIMEPRLARLLSRF 191 (241)
T ss_pred cccccccccchhhcccCchHHHHHH-------------------------HHHHHHHHHCCCcEEEEEeCHHHHHHHHHh
Confidence 234455 8889999999999999888 4567789999
Q ss_pred CCeeccc
Q 006709 590 GFRECSI 596 (634)
Q Consensus 590 GF~~~~~ 596 (634)
|+.....
T Consensus 192 G~~~~~l 198 (241)
T TIGR03694 192 GIQFRQV 198 (241)
T ss_pred CCceEEc
Confidence 9877544
No 164
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=95.66 E-value=0.027 Score=60.63 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=51.2
Q ss_pred chHHHHHHhHHHHHHcccCccCCHHHHHhhcC----cEEEEEECCeEEEEEEEeee--cCCCeEEEEEEEECCCCcC-CC
Q 006709 457 TDLSGIKQIIQPLVESGALVRRTDEELLKALD----SFYVVEREGQIIACAALFPF--FKEKCGEVAAIGVSPECRG-QG 529 (634)
Q Consensus 457 ~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~----~~~V~~~~g~iiG~~~l~~~--~~~~~~ei~~l~V~p~~rg-qG 529 (634)
=|++.++.|++..+..+.. ..++++.+. ..+|. |.--|.+.+... ..++..++..++|.++.|| -|
T Consensus 345 Ldl~r~q~LI~~SFkRTLd----~h~y~~r~~~~La~~iVs---gdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~g 417 (495)
T COG5630 345 LDLPRLQHLIQSSFKRTLD----PHYYETRINTPLARAIVS---GDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEG 417 (495)
T ss_pred cCcHHHHHHHHHHHhhccC----HHHHHHhccCcceeEEee---ccceeeEEEEeeccCCCCCcceeeeeccccccccch
Confidence 3888999998877766554 345555543 44444 445566666532 2346789999999999999 99
Q ss_pred HHHHHH
Q 006709 530 QGDKLL 535 (634)
Q Consensus 530 iG~~Ll 535 (634)
|++.++
T Consensus 418 isd~vf 423 (495)
T COG5630 418 ISDAVF 423 (495)
T ss_pred HHHHHH
Confidence 999999
No 165
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=95.63 E-value=0.031 Score=48.99 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=58.1
Q ss_pred EEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCC
Q 006709 493 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGL 572 (634)
Q Consensus 493 ~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~ 572 (634)
...+|++|-..... ..+|+..-+.-|+|||||+.+.++ ....+.+.++|+
T Consensus 4 lgpeG~PVSW~lmd-----qtge~rmgyTlPeyR~~G~~~~v~-------------------------~~~~~~L~~~g~ 53 (89)
T PF08444_consen 4 LGPEGNPVSWSLMD-----QTGEMRMGYTLPEYRGQGLMSQVM-------------------------YHLAQYLHKLGF 53 (89)
T ss_pred cCCCCCEeEEEEec-----ccccccccccCHhHhcCCHHHHHH-------------------------HHHHHHHHHCCC
Confidence 34578888776655 568898999999999999999999 888888888898
Q ss_pred cEEEEec----HHhHHHHHhCCCeecc
Q 006709 573 DMLFLLT----TRTADWFKSRGFRECS 595 (634)
Q Consensus 573 ~~l~l~t----~~a~~~Y~k~GF~~~~ 595 (634)
.. +..+ ...++..+++||....
T Consensus 54 P~-Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 54 PF-YGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred Ce-EeehHhccHHHHHHHHHCCCeecC
Confidence 74 5555 4588899999998743
No 166
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=95.23 E-value=0.21 Score=49.39 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=62.7
Q ss_pred cEEEEEECCeEEEEEEEeeecC--------------------CCeEEEEEEEECCCCcC------CCHHHHHHhhhcccc
Q 006709 489 SFYVVEREGQIIACAALFPFFK--------------------EKCGEVAAIGVSPECRG------QGQGDKLLGLCIWPL 542 (634)
Q Consensus 489 ~~~V~~~~g~iiG~~~l~~~~~--------------------~~~~ei~~l~V~p~~rg------qGiG~~Ll~~~i~~~ 542 (634)
.++++..+|+++||+.+.|... ....|+..++|+|+.++ .-+...|+
T Consensus 46 ~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~------- 118 (182)
T PF00765_consen 46 VYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELL------- 118 (182)
T ss_dssp EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHH-------
T ss_pred eEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHH-------
Confidence 4566678899999999976421 24489999999999542 23566778
Q ss_pred cccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeeccc
Q 006709 543 LSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 596 (634)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~ 596 (634)
..+.++|.+.|++.+...+ ....++|++.||...-.
T Consensus 119 ------------------~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 119 ------------------LGMVEFALSNGIRHIVGVVDPAMERILRRAGWPVRRL 155 (182)
T ss_dssp ------------------HHHHHHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEES
T ss_pred ------------------HHHHHHHHHCCCCEEEEEEChHHHHHHHHcCCceEEC
Confidence 8999999999999998888 56788999999987654
No 167
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=94.83 E-value=0.34 Score=48.90 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=61.3
Q ss_pred cEEEEE-ECCeEEEEEEEeeec--------------------CCCeEEEEEEEECCCCc---CCC----HHHHHHhhhcc
Q 006709 489 SFYVVE-REGQIIACAALFPFF--------------------KEKCGEVAAIGVSPECR---GQG----QGDKLLGLCIW 540 (634)
Q Consensus 489 ~~~V~~-~~g~iiG~~~l~~~~--------------------~~~~~ei~~l~V~p~~r---gqG----iG~~Ll~~~i~ 540 (634)
++++.. .+|+++||+.+.|.. .+...|+..++|+|+++ +.+ +...|+
T Consensus 54 ~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~----- 128 (207)
T PRK13834 54 TYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMF----- 128 (207)
T ss_pred EEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHH-----
Confidence 455544 468999999885431 12358999999999864 222 445667
Q ss_pred cccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecH-HhHHHHHhCCCeeccc
Q 006709 541 PLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSI 596 (634)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~-~a~~~Y~k~GF~~~~~ 596 (634)
..+.+++...|++.+...++ ...+.|++.||.....
T Consensus 129 --------------------~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~~l 165 (207)
T PRK13834 129 --------------------AGIIEWSMANGYTEIVTATDLRFERILARAGWPMQRL 165 (207)
T ss_pred --------------------HHHHHHHHHCCCCEEEEEECHHHHHHHHHcCCCeEEC
Confidence 89999999999999998884 4667899999977543
No 168
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.41 Score=45.75 Aligned_cols=74 Identities=24% Similarity=0.274 Sum_probs=54.5
Q ss_pred eEEEEEEEeeecCCC---------eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH
Q 006709 498 QIIACAALFPFFKEK---------CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA 568 (634)
Q Consensus 498 ~iiG~~~l~~~~~~~---------~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~ 568 (634)
..||-+.++....+. .+|+.-+.--|.+||+|+|++.+ ..+..++.
T Consensus 83 ~MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav-------------------------~~ml~y~~ 137 (185)
T KOG4135|consen 83 HMVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAV-------------------------RAMLAYAY 137 (185)
T ss_pred hhccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHH-------------------------HHHHHHHH
Confidence 467877776433222 37776666679999999999999 77777774
Q ss_pred H-cCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 569 S-LGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 569 ~-~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
+ +++.+-++.. .+..++|+|++|.....
T Consensus 138 s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~ 170 (185)
T KOG4135|consen 138 SVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFY 170 (185)
T ss_pred HHhhhheEEEEecCCCchHHHHHHHhhheeeee
Confidence 3 5777766655 46899999999988654
No 169
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=94.39 E-value=0.31 Score=48.25 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=49.1
Q ss_pred CCeEEEEEEEeeecC------CCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHH-HHHH
Q 006709 496 EGQIIACAALFPFFK------EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIE-KKAA 568 (634)
Q Consensus 496 ~g~iiG~~~l~~~~~------~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~a~ 568 (634)
..++|+.+.+..+.. .....+.-.+++|+|||+|+++ |+ ..+. +...
T Consensus 55 T~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~-------------------------~~~~~~~~~ 108 (181)
T PF06852_consen 55 TDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQ-------------------------DDICMDELD 108 (181)
T ss_pred CCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HH-------------------------HHHHHHHhc
Confidence 467999888865432 3467888899999999999995 55 3333 3343
Q ss_pred HcCCcEEEEecHHhHHHHHh-CCCeeccc
Q 006709 569 SLGLDMLFLLTTRTADWFKS-RGFRECSI 596 (634)
Q Consensus 569 ~~g~~~l~l~t~~a~~~Y~k-~GF~~~~~ 596 (634)
..+-..+...+..+.+||.+ .||..++.
T Consensus 109 ~~~~N~~~~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 109 SVDDNSVAQGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred cCCCceeeecCHHHHHHHHHHhCCCCCcc
Confidence 33333333333567777765 79887664
No 170
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=93.29 E-value=0.1 Score=57.86 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=46.2
Q ss_pred CCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeeccccc
Q 006709 522 SPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIEM 598 (634)
Q Consensus 522 ~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~~~ 598 (634)
...||.||+|++|| +.++..|++.+.++|.+.. -.++++|+|+||+.++..|
T Consensus 459 ~~~~QH~G~G~~L~-------------------------~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~gpYm 511 (515)
T COG1243 459 EDEWQHRGYGRELL-------------------------EEAERIAREEGAKKILVISGIGVREYYRKLGYELDGPYM 511 (515)
T ss_pred cchhhcccHHHHHH-------------------------HHHHHHHHhhccccEEEEecccHHHHHHHhCccccCCcc
Confidence 47899999999999 9999999999998888777 5799999999999887644
No 171
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=92.80 E-value=0.2 Score=52.39 Aligned_cols=83 Identities=22% Similarity=0.432 Sum_probs=54.7
Q ss_pred cccccCccchHHHHHHhHHHHHHcccC---ccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEe-
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGAL---VRRTDEELLKAL----------------DSFYVVER--EGQIIACAALF- 506 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~---~~~~~~~~~~~l----------------~~~~V~~~--~g~iiG~~~l~- 506 (634)
..+||+...|++++.++- ...+.- .|.+.+.+.+.+ ..++|.|+ .|+++|++++.
T Consensus 2 lvvRP~~~aDl~al~~LA---~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a 78 (336)
T COG3138 2 LVVRPVERADLEALMELA---VKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEA 78 (336)
T ss_pred cccccccccCHHHHHHHH---HhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEE
Confidence 358999999999999884 233221 333444444433 25778887 79999998873
Q ss_pred ------eecC----------------------------CCeEEEEEEEECCCCcCCCHHHHH
Q 006709 507 ------PFFK----------------------------EKCGEVAAIGVSPECRGQGQGDKL 534 (634)
Q Consensus 507 ------~~~~----------------------------~~~~ei~~l~V~p~~rgqGiG~~L 534 (634)
||++ ..+.|+..+|++||||.-+.|+.|
T Consensus 79 ~vGl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Ll 140 (336)
T COG3138 79 AVGLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLL 140 (336)
T ss_pred eeccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhh
Confidence 2211 122578899999999977777544
No 172
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.31 E-value=0.22 Score=55.71 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=86.8
Q ss_pred cccccCccchHHHHHHhHHHHHHcccC-ccCCHHHHHhhc--CcEEEEE-------ECCeEEEEEEEeeecCCCeEEEEE
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKAL--DSFYVVE-------REGQIIACAALFPFFKEKCGEVAA 518 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~-~~~~~~~~~~~l--~~~~V~~-------~~g~iiG~~~l~~~~~~~~~ei~~ 518 (634)
..++.+.+.+++.|.+|.+....-... .+.+.+++.+.. ..|+|.. -|.-+||++.+.. ++...+|..
T Consensus 414 l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~k--k~~~w~IDt 491 (574)
T COG3882 414 LTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEK--KESEWFIDT 491 (574)
T ss_pred EEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEe--cCCeEEhHH
Confidence 468889999999999997643322222 344777777733 3455443 2567999988873 445666666
Q ss_pred EEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecH------HhHHHHHhCCCe
Q 006709 519 IGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTT------RTADWFKSRGFR 592 (634)
Q Consensus 519 l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~------~a~~~Y~k~GF~ 592 (634)
+..+-.-=|+++-..|| ..+++.|.+.|+..++..-. .-.+||+++||+
T Consensus 492 ~lmSCRVlgRkvE~~l~-------------------------~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~ 546 (574)
T COG3882 492 FLMSCRVLGRKVEQRLM-------------------------NSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFK 546 (574)
T ss_pred HHHHHHHHHHHHHHHHH-------------------------HHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhccc
Confidence 66555555889999999 99999999999999987652 367899999999
Q ss_pred ecc
Q 006709 593 ECS 595 (634)
Q Consensus 593 ~~~ 595 (634)
..+
T Consensus 547 l~~ 549 (574)
T COG3882 547 LKG 549 (574)
T ss_pred ccc
Confidence 654
No 173
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=91.61 E-value=0.75 Score=42.52 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=54.7
Q ss_pred HhhcCcEEEEEECCeEEEEEEEeeecC---CCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchH
Q 006709 484 LKALDSFYVVEREGQIIACAALFPFFK---EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR 560 (634)
Q Consensus 484 ~~~l~~~~V~~~~g~iiG~~~l~~~~~---~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~ 560 (634)
......-|....+|.+||++.+..... +-.--+..+++-..|||+|+|++..
T Consensus 33 ~~~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aa------------------------- 87 (143)
T COG5628 33 RDPVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAA------------------------- 87 (143)
T ss_pred cCcccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHH-------------------------
Confidence 333445666778899999998753211 1223466789999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEec--HHhHHHHHhCCC
Q 006709 561 DYIEKKAASLGLDMLFLLT--TRTADWFKSRGF 591 (634)
Q Consensus 561 ~~i~~~a~~~g~~~l~l~t--~~a~~~Y~k~GF 591 (634)
+.|-..+ .|+-.|-..- ++|+.||++.=+
T Consensus 88 K~If~~~--~g~w~Va~i~EN~PA~~fwK~~~~ 118 (143)
T COG5628 88 KAIFGSA--WGVWQVATVRENTPARAFWKRVAE 118 (143)
T ss_pred HHHHHHh--hceEEEEEeccCChhHHHHHhhhc
Confidence 6665544 3444333222 689999998644
No 174
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=91.08 E-value=0.19 Score=42.17 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEEECCCCcCCCHHHHHH
Q 006709 514 GEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 514 ~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
+-|..|.|+|.+|++||+++||
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Ll 27 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLL 27 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHH
Confidence 4578999999999999999999
No 175
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.60 E-value=4.1 Score=41.15 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=61.6
Q ss_pred cEEEE-EECCeEEEEEEEeeecC--------------------CCeEEEEEEEECC--CCcCCC----HHHHHHhhhccc
Q 006709 489 SFYVV-EREGQIIACAALFPFFK--------------------EKCGEVAAIGVSP--ECRGQG----QGDKLLGLCIWP 541 (634)
Q Consensus 489 ~~~V~-~~~g~iiG~~~l~~~~~--------------------~~~~ei~~l~V~p--~~rgqG----iG~~Ll~~~i~~ 541 (634)
.++++ ..+|+|+||+.+-|... ....|...++|++ .-+..| ++..|+
T Consensus 53 ~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~------ 126 (209)
T COG3916 53 VYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELF------ 126 (209)
T ss_pred eEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHH------
Confidence 44555 57899999999865321 1347888999997 333333 356677
Q ss_pred ccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCeeccc
Q 006709 542 LLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 596 (634)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~ 596 (634)
..+.+++...|++.|...| +...+.+++.||...-+
T Consensus 127 -------------------~g~ie~a~~~G~~~IvtVt~~~meril~r~Gw~~~ri 163 (209)
T COG3916 127 -------------------AGMIEYALARGITGIVTVTDTGMERILRRAGWPLTRI 163 (209)
T ss_pred -------------------HHHHHHHHHcCCceEEEEEchHHHHHHHHcCCCeEEc
Confidence 8899999999999999888 45677899999977554
No 176
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=89.15 E-value=0.54 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEEEEECCCCcCCCHHHHHHhh
Q 006709 514 GEVAAIGVSPECRGQGQGDKLLGL 537 (634)
Q Consensus 514 ~ei~~l~V~p~~rgqGiG~~Ll~~ 537 (634)
+.|-.|+|||+|++.|+|++-++.
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqL 638 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQL 638 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHH
Confidence 567899999999999999999943
No 177
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=87.65 E-value=1.4 Score=39.52 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=35.8
Q ss_pred EEEEEECCeEEEEEEEeeec-CCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 490 FYVVEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 490 ~~V~~~~g~iiG~~~l~~~~-~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
.+-+..++...||+.+.+-. .....+|..++|.|..||+|+|+.|+
T Consensus 10 ~~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf 56 (99)
T cd04264 10 LHAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALW 56 (99)
T ss_pred ceEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHH
Confidence 34444556688888887421 23678999999999999999999999
No 178
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=87.37 E-value=1.4 Score=39.52 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=33.5
Q ss_pred EEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 491 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 491 ~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
+-+..++..=||+.+.+-......+|..++|.|..||+|+|+.|+
T Consensus 12 ~~~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf 56 (99)
T cd04265 12 HTIYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALW 56 (99)
T ss_pred eEEEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHH
Confidence 334444556667767642213678999999999999999999999
No 179
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=84.55 E-value=7.2 Score=39.01 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=74.1
Q ss_pred cccccCccchHHHHHHhHHHHHHcccC-ccCCHHHHHhhcC------cEEEEEECC-eEEEEEEEeeecC-----CCe--
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALD------SFYVVEREG-QIIACAALFPFFK-----EKC-- 513 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~-~~~~~~~~~~~l~------~~~V~~~~g-~iiG~~~l~~~~~-----~~~-- 513 (634)
..+|+++++|++++..+++.+.+.--+ ...+.|++..++. ..||+++++ +|-.++.++..+. ++.
T Consensus 29 ~glR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~ 108 (190)
T PF02799_consen 29 PGLRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKT 108 (190)
T ss_dssp TTEEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSE
T ss_pred CccccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccc
Confidence 458999999999999999988776443 3347888888873 467777764 8999988864432 212
Q ss_pred ---EEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhC
Q 006709 514 ---GEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSR 589 (634)
Q Consensus 514 ---~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~ 589 (634)
+++ -.++.... =-..|+ ..+.-.|++.|++...+.. -.-..|.+.+
T Consensus 109 l~aAY~-fY~~~~~~----~l~~Lm-------------------------~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~l 158 (190)
T PF02799_consen 109 LKAAYS-FYYVATST----RLKELM-------------------------NDALILAKNEGFDVFNALDLMDNSSFLEDL 158 (190)
T ss_dssp EEEEEE-EEEEESSS----HHHHHH-------------------------HHHHHHHHHTTESEEEEESTTTGGGTTTTT
T ss_pred eeeeee-eeeeecCC----CHHHHH-------------------------HHHHHHHHHcCCCEEehhhhccchhhHhhC
Confidence 333 22333331 122344 6666788999999887776 2344678889
Q ss_pred CCeec
Q 006709 590 GFREC 594 (634)
Q Consensus 590 GF~~~ 594 (634)
.|.+-
T Consensus 159 KFg~G 163 (190)
T PF02799_consen 159 KFGPG 163 (190)
T ss_dssp T-EEE
T ss_pred CccCC
Confidence 99763
No 180
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=84.54 E-value=12 Score=36.53 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred ccCccchHHHHHHhHHHHHHccc-------CccCCHHHHHhhcC------cEEE-EE--ECCeEEEEEEEeeec------
Q 006709 452 RTAKVTDLSGIKQIIQPLVESGA-------LVRRTDEELLKALD------SFYV-VE--REGQIIACAALFPFF------ 509 (634)
Q Consensus 452 R~a~~~D~~~i~~l~~~~~~~~~-------~~~~~~~~~~~~l~------~~~V-~~--~~g~iiG~~~l~~~~------ 509 (634)
.....+|-.++.+++.-+.++.+ -...+.+-+.-.+. .+-+ +. ..+++|||+...|..
T Consensus 27 ~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~ 106 (162)
T PF01233_consen 27 STLDLNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDK 106 (162)
T ss_dssp EE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTE
T ss_pred EecCCCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeee
Confidence 44455566666666654444332 13445555554553 2222 32 369999999887642
Q ss_pred CCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcE
Q 006709 510 KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDM 574 (634)
Q Consensus 510 ~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~ 574 (634)
..+..+|.-|+||+.+|+++++--|+ +++...+...|+-.
T Consensus 107 ~~~~~eINFLCVhKklRskrlAPvLI-------------------------kEItRRvn~~gI~q 146 (162)
T PF01233_consen 107 VIKMVEINFLCVHKKLRSKRLAPVLI-------------------------KEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEE-GGGTTSSHHHHHH-------------------------HHHHHHHHTTT--E
T ss_pred EeeeeeEEEEeecHhHhhcCCcHHHH-------------------------HHHHHHhhhcCcee
Confidence 12458999999999999999999999 88888887777644
No 181
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=82.89 E-value=8.9 Score=41.67 Aligned_cols=115 Identities=18% Similarity=0.225 Sum_probs=73.7
Q ss_pred cccccCccchHHHHHHhHHHHHHcccC-ccCCHHHHHhhcC------cEEEEEE-CCeEEEEEEEeeecC-----C--C-
Q 006709 449 EGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALD------SFYVVER-EGQIIACAALFPFFK-----E--K- 512 (634)
Q Consensus 449 e~iR~a~~~D~~~i~~l~~~~~~~~~~-~~~~~~~~~~~l~------~~~V~~~-~g~iiG~~~l~~~~~-----~--~- 512 (634)
..+|++++.|++++.+|+..+...-.+ ...+.|++..++. ..||++. +|+|-++++++..+. . +
T Consensus 261 ~G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~kt 340 (421)
T KOG2779|consen 261 PGLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKT 340 (421)
T ss_pred CCcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCcce
Confidence 468999999999999999887765444 3346788887763 4566665 899999998874332 1 1
Q ss_pred --eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhC
Q 006709 513 --CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSR 589 (634)
Q Consensus 513 --~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~ 589 (634)
.+++ .-.|+.+-+ =..|+ .-+.-.++..|++-..+.. -.-..|++.+
T Consensus 341 l~aaYl-yY~v~~~t~----~~~lv-------------------------nDalilak~~gfDVFNAld~meN~~fl~~L 390 (421)
T KOG2779|consen 341 LQAAYL-YYNVATSTP----LLQLV-------------------------NDALILAKQKGFDVFNALDLMENESFLKDL 390 (421)
T ss_pred eeeeeE-EEeccCCcc----HHHHH-------------------------HHHHHHHHhcCCceeehhhhhhhhhHHHhc
Confidence 1333 223433310 12233 4444467788888665544 3456688999
Q ss_pred CCee
Q 006709 590 GFRE 593 (634)
Q Consensus 590 GF~~ 593 (634)
+|-+
T Consensus 391 kFg~ 394 (421)
T KOG2779|consen 391 KFGP 394 (421)
T ss_pred CcCc
Confidence 9965
No 182
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=82.65 E-value=8.5 Score=41.15 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=58.8
Q ss_pred cEEEEE-ECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHH
Q 006709 489 SFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKA 567 (634)
Q Consensus 489 ~~~V~~-~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a 567 (634)
.+++++ .+|++||.+.+... .+.......+.+++++..+-+..|+ -.+.++|
T Consensus 196 ~l~~a~~~~g~~va~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~lL~-------------------------w~~i~~a 248 (330)
T TIGR03019 196 EVLTVRLGDGVVASAVLSFYF--RDEVLPYYAGGLREARDVAANDLMY-------------------------WELMRRA 248 (330)
T ss_pred EEEEEEeCCCCEEEEEEEEEe--CCEEEEEeccChHHHHhhChHHHHH-------------------------HHHHHHH
Confidence 356667 68999988776633 2333322456789999999999999 8888999
Q ss_pred HHcCCcEEEEecH----HhHHHHHhCCCeeccc
Q 006709 568 ASLGLDMLFLLTT----RTADWFKSRGFRECSI 596 (634)
Q Consensus 568 ~~~g~~~l~l~t~----~a~~~Y~k~GF~~~~~ 596 (634)
.+.|++..-+... ...+|-++.||++...
T Consensus 249 ~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l 281 (330)
T TIGR03019 249 CERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPL 281 (330)
T ss_pred HHCCCcEEEcCCCCCCCccHHHHhcCCCeeccc
Confidence 9999998877652 3555667789988654
No 183
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=81.04 E-value=4.1 Score=40.66 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=26.6
Q ss_pred eEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 498 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 498 ~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
.++||-.=... ....--+++|.|-|.||++|+|+.|+
T Consensus 66 h~vGyFSKEk~-s~~~~NLsCIl~lP~yQrkGyG~~LI 102 (188)
T PF01853_consen 66 HIVGYFSKEKE-SWDNNNLSCILTLPPYQRKGYGRFLI 102 (188)
T ss_dssp EEEEEEEEESS--TT-EEESEEEE-GGGTTSSHHHHHH
T ss_pred eeEEEEEEEec-ccCCeeEeehhhcchhhhcchhhhhh
Confidence 47777655422 22335789999999999999999999
No 184
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=79.59 E-value=2.3 Score=45.88 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=42.2
Q ss_pred CCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHH-HcCCcEEEEec-HHhHHHHHhCCCeeccccc
Q 006709 523 PECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAA-SLGLDMLFLLT-TRTADWFKSRGFRECSIEM 598 (634)
Q Consensus 523 p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~-~~g~~~l~l~t-~~a~~~Y~k~GF~~~~~~~ 598 (634)
..||.||+|..|| +.++..|+ +.|-.++-+.. -.++.+|.|+||+..+..|
T Consensus 497 ~KfQHQG~GtLLm-------------------------eEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPYM 549 (554)
T KOG2535|consen 497 TKFQHQGFGTLLM-------------------------EEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPYM 549 (554)
T ss_pred hhhhhcchhhHHH-------------------------HHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChhH
Confidence 3699999999999 99999996 46777777666 5789999999999877544
No 185
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=78.94 E-value=17 Score=37.32 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=49.9
Q ss_pred EEEEEE-CCeEEEEEEEeeec-CCC-eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHH
Q 006709 490 FYVVER-EGQIIACAALFPFF-KEK-CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKK 566 (634)
Q Consensus 490 ~~V~~~-~g~iiG~~~l~~~~-~~~-~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 566 (634)
.+-+.. ||++||...-+|-. ... +-+=+.++|.|++++.|+|-+|= ..-.++
T Consensus 48 vlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~sglg~aLK-------------------------~~Qre~ 102 (266)
T COG3375 48 VLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKGSGLGVALK-------------------------MKQRER 102 (266)
T ss_pred EEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhccccccccchhhhhH-------------------------HHHHHH
Confidence 444444 56999999888732 333 34455789999999999999998 777788
Q ss_pred HHHcCCcEEEEecH
Q 006709 567 AASLGLDMLFLLTT 580 (634)
Q Consensus 567 a~~~g~~~l~l~t~ 580 (634)
+.+.|+..+.+.-.
T Consensus 103 a~~~G~tli~WTfD 116 (266)
T COG3375 103 ALSMGYTLIAWTFD 116 (266)
T ss_pred HHhcCeeeEEEecc
Confidence 99999998876553
No 186
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=77.66 E-value=1.7 Score=48.34 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=40.2
Q ss_pred EEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEe-----c----HHhHH
Q 006709 514 GEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLL-----T----TRTAD 584 (634)
Q Consensus 514 ~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~-----t----~~a~~ 584 (634)
+.|+.+.||||||+-|+|..-+ ..+.+|..+.-+...+-. + .+-..
T Consensus 242 ariarvvvhpdyr~dglg~~sv-------------------------~~a~ewI~eRriPEmr~rkHlvetiaqmarynp 296 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSV-------------------------IAALEWIIERRIPEMRPRKHLVETIAQMARYNP 296 (593)
T ss_pred hheeEEEeccccccCccchhHH-------------------------HHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCc
Confidence 5689999999999999999999 666666665555544332 1 12234
Q ss_pred HHHhCCCeec
Q 006709 585 WFKSRGFREC 594 (634)
Q Consensus 585 ~Y~k~GF~~~ 594 (634)
||++.||+..
T Consensus 297 ffe~~gfkyl 306 (593)
T COG2401 297 FFEKVGFKYL 306 (593)
T ss_pred hhhhhceeee
Confidence 8999999753
No 187
>PRK14852 hypothetical protein; Provisional
Probab=76.14 E-value=16 Score=45.00 Aligned_cols=121 Identities=11% Similarity=0.122 Sum_probs=80.1
Q ss_pred cccC-ccchHHHHHHhH-HHHHHcccCccCCHHHHHhhc---C--cEEEEEECCeEEEEEEEeeecC-------------
Q 006709 451 TRTA-KVTDLSGIKQII-QPLVESGALVRRTDEELLKAL---D--SFYVVEREGQIIACAALFPFFK------------- 510 (634)
Q Consensus 451 iR~a-~~~D~~~i~~l~-~~~~~~~~~~~~~~~~~~~~l---~--~~~V~~~~g~iiG~~~l~~~~~------------- 510 (634)
+|.| +.+|+.++..|. ..|...++..+-+...+.... . ..|++-..+++++...+.+-..
T Consensus 31 ~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~e 110 (989)
T PRK14852 31 IKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPE 110 (989)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHH
Confidence 4554 577888888875 457778887443333222222 1 3466666577777776653211
Q ss_pred --------CCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HH
Q 006709 511 --------EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TR 581 (634)
Q Consensus 511 --------~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~ 581 (634)
...+|+..|+++|+.|.+-+=-.|+ +.+..++...+++.+.+.+ .+
T Consensus 111 Ld~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~-------------------------~~~~~y~~~~~~dd~~i~VnPk 165 (989)
T PRK14852 111 VDALRAQGRNVVEVGALATQYSRRWTNLMVFLA-------------------------KAMFQYSMMSEVDDILVTVNPK 165 (989)
T ss_pred HHHHHHcCCeEEeeehheechhhcccchhHHHH-------------------------HHHHHHHHHcCCCeEEEEECcc
Confidence 1338999999999888766555666 5555556667999988888 56
Q ss_pred hHHHHHh-CCCeeccc
Q 006709 582 TADWFKS-RGFRECSI 596 (634)
Q Consensus 582 a~~~Y~k-~GF~~~~~ 596 (634)
=..||++ +||+..+.
T Consensus 166 H~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 166 HVKFYTDIFLFKPFGE 181 (989)
T ss_pred hHHHHHHHhCCccccc
Confidence 7889996 79988764
No 188
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=72.90 E-value=7.8 Score=41.06 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=29.3
Q ss_pred CeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhc
Q 006709 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (634)
Q Consensus 497 g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i 539 (634)
-.+|||-.=.... ...--+++|.|-|.||++|+|+-|++.+-
T Consensus 140 ~h~vGYFSKEK~s-~~~nNLaCIltLPpyQrkGyG~~LI~fSY 181 (290)
T PLN03238 140 SHIVGYFSKEKVS-AEDYNLACILTLPPYQRKGYGKFLISFAY 181 (290)
T ss_pred cEEEEEeceeccc-cCCCcEEEEEecChhhhccHhHhHHHHHh
Confidence 4577765433211 12245899999999999999999995544
No 189
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=72.32 E-value=5.4 Score=35.27 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=33.4
Q ss_pred cEEEEEECCeEEEEEEEeeec----------------------CCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 489 SFYVVEREGQIIACAALFPFF----------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 489 ~~~V~~~~g~iiG~~~l~~~~----------------------~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
+++|...+.++||++.+.+.. ....+||..++|+|+||+...-..|+
T Consensus 32 h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 32 HLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred EEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 455554444599999874211 12448999999999999998877775
No 190
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=63.47 E-value=1.2e+02 Score=31.50 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCHHHHHhhcC------cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhccccccccccccc
Q 006709 478 RTDEELLKALD------SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI 551 (634)
Q Consensus 478 ~~~~~~~~~l~------~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~ 551 (634)
.+.+++...+. .++-...+|++||++.+-.. .+...-| -.+-||++-..++|+-.+
T Consensus 128 ~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l-~d~lSAV-Y~FyDPd~~~~SLG~~~i---------------- 189 (240)
T PRK01305 128 PSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVL-DDGLSAV-YTFYDPDEEHRSLGTFAI---------------- 189 (240)
T ss_pred CCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEecc-CCceeeE-EEeeCCCccccCCHHHHH----------------
Confidence 34555554442 23334468999999988643 3333344 457799999999999988
Q ss_pred ccCCCcchHHHHHHHHHHcCCcEEEEec
Q 006709 552 STNGFPFLRDYIEKKAASLGLDMLFLLT 579 (634)
Q Consensus 552 ~~~~~~~~~~~i~~~a~~~g~~~l~l~t 579 (634)
-.-++.|+++|++-+++--
T Consensus 190 ---------L~qI~~ak~~gl~y~YLGY 208 (240)
T PRK01305 190 ---------LWQIELAKRLGLPYVYLGY 208 (240)
T ss_pred ---------HHHHHHHHHcCCCeEeeeE
Confidence 6777889999999888754
No 191
>PLN03239 histone acetyltransferase; Provisional
Probab=62.77 E-value=15 Score=39.94 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=31.9
Q ss_pred cEEEEE-EC---CeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhc
Q 006709 489 SFYVVE-RE---GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (634)
Q Consensus 489 ~~~V~~-~~---g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i 539 (634)
.|||.. .| -.++||-.=... .....-+++|.|-|.||++|+|+-|++.+-
T Consensus 186 lFYVl~e~D~~g~h~vGYFSKEK~-s~~~~NLaCIltLPpyQrkGyG~lLI~fSY 239 (351)
T PLN03239 186 LFYVLCEVDERGFHPVGYYSKEKY-SDVGYNLACILTFPAHQRKGYGRFLIAFSY 239 (351)
T ss_pred EEEEEEEecCCceEEEEEeeeccc-CCCCCceEEEEecChhhhcchhhhhHhhhh
Confidence 355554 32 346666433311 111235899999999999999999995444
No 192
>PTZ00064 histone acetyltransferase; Provisional
Probab=62.50 E-value=14 Score=42.00 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=32.7
Q ss_pred cEEEEE-EC---CeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhc
Q 006709 489 SFYVVE-RE---GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (634)
Q Consensus 489 ~~~V~~-~~---g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i 539 (634)
.|||.. .| -.+|||..=... .....-|++|.|-|.||++|+|+.|++..-
T Consensus 357 lFYVLtE~D~~G~HiVGYFSKEK~-S~~~nNLACILtLPpyQRKGYGklLIdfSY 410 (552)
T PTZ00064 357 LFYIVTEVDEEGCHIVGYFSKEKV-SLLHYNLACILTLPCYQRKGYGKLLVDLSY 410 (552)
T ss_pred EEEEEEEecCCCcEEEEEeccccc-CcccCceEEEEecchhhhcchhhhhhhhhh
Confidence 355553 33 367776443311 112236899999999999999999995444
No 193
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=61.96 E-value=15 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=18.6
Q ss_pred EEEEEECCCCcCCCHHHHHH
Q 006709 516 VAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 516 i~~l~V~p~~rgqGiG~~Ll 535 (634)
|-.++|++.+|++|+|++|+
T Consensus 49 vLDFyVhes~QR~G~Gk~LF 68 (120)
T PF05301_consen 49 VLDFYVHESRQRRGYGKRLF 68 (120)
T ss_pred eeeEEEEeceeccCchHHHH
Confidence 45889999999999999999
No 194
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.14 E-value=8.9 Score=39.36 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEEEEECCCCcCCCHHHHHH
Q 006709 515 EVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 515 ei~~l~V~p~~rgqGiG~~Ll 535 (634)
-|-.+|||+.+|++|.|.+|+
T Consensus 110 cILDFyVheS~QR~G~G~~lf 130 (264)
T KOG4601|consen 110 CILDFYVHESEQRSGNGFKLF 130 (264)
T ss_pred eEEEEEeehhhhhcCchHHHH
Confidence 355999999999999999999
No 195
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=56.25 E-value=14 Score=41.63 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=33.3
Q ss_pred cEEEEE-EC---CeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhc
Q 006709 489 SFYVVE-RE---GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (634)
Q Consensus 489 ~~~V~~-~~---g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i 539 (634)
.|||.. .| -.+|||..=.... ....-|++|.|.|-||++|+|+.|++..-
T Consensus 279 lFYvl~e~d~~g~h~vGyFSKEk~s-~~~~NLaCIltlP~yQrkGyG~~LI~~SY 332 (450)
T PLN00104 279 LFYVLCECDDRGCHMVGYFSKEKHS-EEDYNLACILTLPPYQRKGYGKFLIAFSY 332 (450)
T ss_pred EEEEEEEecCCCcEEEEEecccccC-cCCCceEEEEecchhhhcchhheehhhee
Confidence 355553 32 3677875443211 11235899999999999999999996554
No 196
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=56.23 E-value=1.8e+02 Score=27.34 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=45.6
Q ss_pred EEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHc
Q 006709 491 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASL 570 (634)
Q Consensus 491 ~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~ 570 (634)
+-...+|++||++.+-.. .+...-| -.+-||++....+|+-.+ -.-++.|++.
T Consensus 42 ~~~~~~~kLiav~v~D~l-~~glSaV-Y~fyDPd~~~~SlG~~~i-------------------------L~eI~~a~~~ 94 (128)
T PF04377_consen 42 LEYRLDGKLIAVAVVDIL-PDGLSAV-YTFYDPDYSKRSLGTYSI-------------------------LREIELAREL 94 (128)
T ss_pred EEEEeCCeEEEEEEeecc-cchhhhe-eeeeCCCccccCcHHHHH-------------------------HHHHHHHHHc
Confidence 334578999999877633 2333334 346699999999999998 6777889999
Q ss_pred CCcEEEEe
Q 006709 571 GLDMLFLL 578 (634)
Q Consensus 571 g~~~l~l~ 578 (634)
|++-+.+-
T Consensus 95 ~l~y~YLG 102 (128)
T PF04377_consen 95 GLPYYYLG 102 (128)
T ss_pred CCCEEeeC
Confidence 99988764
No 197
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=53.82 E-value=34 Score=28.74 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=26.6
Q ss_pred CeEEEEECCccCCCCChHHHHHHHHHHHhCCCeEEEEeCch
Q 006709 100 GTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTH 140 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~l~~la~dIa~L~~~G~kvVLVHGGG 140 (634)
.+.|+--||.-.+| .+.+...|..++..--.++|||||.
T Consensus 3 g~rVli~GgR~~~D--~~~i~~~Ld~~~~~~~~~~lvhGga 41 (71)
T PF10686_consen 3 GMRVLITGGRDWTD--HELIWAALDKVHARHPDMVLVHGGA 41 (71)
T ss_pred CCEEEEEECCcccc--HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 35677778888776 4455555555555445688999997
No 198
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=52.96 E-value=1.1e+02 Score=32.08 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=39.9
Q ss_pred cEEEEEE-CCeEEEEEEEeeecCCCeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHH
Q 006709 489 SFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKA 567 (634)
Q Consensus 489 ~~~V~~~-~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a 567 (634)
..+++.. +|+|+|++.+.|..+.....+.-.-=+|+ -=+|+-..|+ ..+.+.+
T Consensus 181 ~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~-------------------------~~~~~~~ 234 (299)
T PF09924_consen 181 RGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLN-------------------------VEFAEHL 234 (299)
T ss_dssp EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHH-------------------------HHHHHHS
T ss_pred eEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHH-------------------------HHHHHhh
Confidence 5667777 99999999999886433333322233455 4578888888 7777888
Q ss_pred HHcCCcEEEEec
Q 006709 568 ASLGLDMLFLLT 579 (634)
Q Consensus 568 ~~~g~~~l~l~t 579 (634)
++.|++.+.|..
T Consensus 235 ~~~g~~~lnLg~ 246 (299)
T PF09924_consen 235 KAEGVEYLNLGF 246 (299)
T ss_dssp --TT--EEE---
T ss_pred hhCCceEEEccc
Confidence 777888887554
No 199
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=50.93 E-value=2.4e+02 Score=27.27 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=63.3
Q ss_pred ccccCccchHHHHHHhHHHHHHc------cc-------CccCCHHHH--HhhcCcEEEEE-ECCeEEEEEEEeeecCC--
Q 006709 450 GTRTAKVTDLSGIKQIIQPLVES------GA-------LVRRTDEEL--LKALDSFYVVE-REGQIIACAALFPFFKE-- 511 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~l~~~~~~~------~~-------~~~~~~~~~--~~~l~~~~V~~-~~g~iiG~~~l~~~~~~-- 511 (634)
.+|+.++.|++.|..+-...... .. -.+.+...+ .....+.||++ .+|++.||+.....+..
T Consensus 2 ~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQGdr 81 (161)
T PF09390_consen 2 RYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQGDR 81 (161)
T ss_dssp EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE-SSS
T ss_pred cccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhcCCC
Confidence 47999999999999882111000 00 011122222 22235788888 88999999877654432
Q ss_pred CeEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHH-hHHHHHhCC
Q 006709 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTR-TADWFKSRG 590 (634)
Q Consensus 512 ~~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~-a~~~Y~k~G 590 (634)
....+..|.++|. +....-.-|| ..+.+-|-..++-.|.+..++ ...--+..|
T Consensus 82 ptVlV~ri~~~~~-~~~~~~~GLL-------------------------rAvvKSAYDa~VYEv~l~l~p~l~~A~~a~~ 135 (161)
T PF09390_consen 82 PTVLVRRILLAPG-EPEEVYEGLL-------------------------RAVVKSAYDAGVYEVHLHLDPELEAAARAEG 135 (161)
T ss_dssp EEEEEEEE---EE-SSHHHHHHHH-------------------------HHHHHHHHHTT-SEEEE---THHHHHHHHTT
T ss_pred ceEEEEEeecCCC-CcHHHHHHHH-------------------------HHHHHhhhccceEEEEeeCCHHHHHHHhhcc
Confidence 3467777766654 5567788889 888899999999999988854 223345667
Q ss_pred Ceecc
Q 006709 591 FRECS 595 (634)
Q Consensus 591 F~~~~ 595 (634)
|...+
T Consensus 136 ~~~~~ 140 (161)
T PF09390_consen 136 FRLGG 140 (161)
T ss_dssp ----S
T ss_pred cccCC
Confidence 76533
No 200
>PTZ00063 histone deacetylase; Provisional
Probab=50.16 E-value=55 Score=36.97 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhh-hHHHhhcCCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHH
Q 006709 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQ 142 (634)
Q Consensus 80 ~~~~v~~~r~a~-pYi~~~r~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~ 142 (634)
...|...|++.. |-+..|+...|||-.|.-++..+. .+...+-+..+.+.+.++++|-|||-.
T Consensus 231 D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~ 301 (436)
T PTZ00063 231 DDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYT 301 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCC
Confidence 678999999875 778999999999999999887643 355555556677778899999888643
No 201
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=48.71 E-value=52 Score=34.10 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCcEEEEecH-HhHHHHHhCCCeecccccchhHhhhhccCCCCceEEE-eecCCC
Q 006709 561 DYIEKKAASLGLDMLFLLTT-RTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYM-KKLLPD 623 (634)
Q Consensus 561 ~~i~~~a~~~g~~~l~l~t~-~a~~~Y~k~GF~~~~~~~~~~~~~~~~~~~~~s~~~~-k~l~~~ 623 (634)
..+.+.|++.|+.+|++.+. ...++|++.||.+.+. +|. .|+. ...|+| |.|.++
T Consensus 28 ~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e~~--i~~----~f~g--~~~~~~~~~~~~~ 84 (266)
T TIGR03827 28 PDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEEAK--IPG----YFNG--HDAYFMSKYLDED 84 (266)
T ss_pred HHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEEEe--ccc----ccCC--CceEEEEEcCchH
Confidence 99999999999999999994 5678999999999764 441 2332 355666 666543
No 202
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=48.42 E-value=58 Score=34.98 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=46.4
Q ss_pred CeEEEEECCccCCCCC-h----HHHHHHHHHHHhCCCeEEEEeCc-hHHHHHHHHHcCCccc
Q 006709 100 GTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAK 155 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l----~~la~dIa~L~~~G~kvVLVHGG-G~~I~~~l~~lg~~~~ 155 (634)
+.+|.-+.|.+++++. + ..+.+-|..|++.|+++.|+.+| ...+...++.+|+..-
T Consensus 129 ~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~y 190 (303)
T PHA03398 129 HVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGY 190 (303)
T ss_pred cEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcc
Confidence 6889999999998865 3 56788899999999999999966 5667888888888643
No 203
>PHA01733 hypothetical protein
Probab=47.22 E-value=30 Score=33.51 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=59.9
Q ss_pred ccccCccchHHHHHH-hHHHH-HHcccCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECC
Q 006709 450 GTRTAKVTDLSGIKQ-IIQPL-VESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 523 (634)
Q Consensus 450 ~iR~a~~~D~~~i~~-l~~~~-~~~~~~~~~~~~~~~~~l----~~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p 523 (634)
.||++|.+|+..+.+ +-+.- .+-..+-. +...+...+ +..+.+..+|+++|.+.+.+-.....+.+.-+..+-
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~-~p~~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~~ 82 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH-SPLALHLSLDVSENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTPA 82 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC-CcccchhhhhccccceEEEecCCcEEEEecccccccCCCCceeEEecHH
Confidence 389999999866555 32211 11111111 111222111 243666678999999988863233444453333322
Q ss_pred CCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec----HHhHHHHHhCCCeeccc
Q 006709 524 ECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 596 (634)
Q Consensus 524 ~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t----~~a~~~Y~k~GF~~~~~ 596 (634)
=.+ +-+.++..|- ..+.+ ...+..|+=.+ ..+++|-+.+||+....
T Consensus 83 v~k---~~~~f~re~r---------------------~~l~e---~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~ 132 (153)
T PHA01733 83 IEK---NPIALLRGAK---------------------WWLPK---SRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRY 132 (153)
T ss_pred hHh---CCHHHHHHHH---------------------HHHHH---hccccHHHHhHhcccHHHHHHHHHcCceeecc
Confidence 112 3344553333 33333 22223222222 46899999999987543
No 204
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=46.09 E-value=67 Score=34.48 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=46.9
Q ss_pred CCeEEEEECCccCCCCC-h----HHHHHHHHHHHhCCCeEEEEeCch-HHHHHHHHHcCCccc
Q 006709 99 GGTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEAK 155 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~-l----~~la~dIa~L~~~G~kvVLVHGGG-~~I~~~l~~lg~~~~ 155 (634)
.+.||.=+.|.+++++. + +.+.+.|..|++.|++++|+++++ ..+...++++|+..-
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~Y 188 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRY 188 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcc
Confidence 47899999999999865 2 678889999999999999998765 456778888888753
No 205
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=45.98 E-value=61 Score=33.81 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=35.4
Q ss_pred hcCcEEEEEECCeEEEEEEEeeec---------------------------CCCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 486 ALDSFYVVEREGQIIACAALFPFF---------------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 486 ~l~~~~V~~~~g~iiG~~~l~~~~---------------------------~~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
....|+++..+..+|||....|.. ++-.+-|..+.|.+-.|.+||+++|+
T Consensus 129 ~~k~~lFIS~rk~~VGcLvaE~Is~a~~~i~~~~~~~~~~s~~~~~~s~~~~~~~~GIsRIWV~s~~Rr~gIAs~ll 205 (257)
T KOG3014|consen 129 KIKTFLFISVRKIVVGCLVAEPISQAFRVIESPGVTDSYDSQKAWQNSPLPEPAICGISRIWVSSLRRRKGIASLLL 205 (257)
T ss_pred ceeEEEEEEecceeeeEEEehhhhhhhhhccCcCcccchhhHHHhccCCCCCCcEeeeEEEEeehhhhhhhhHHHHH
Confidence 344566555555689987754321 11225678999999999999999999
No 206
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=45.47 E-value=2.2e+02 Score=31.47 Aligned_cols=112 Identities=18% Similarity=0.076 Sum_probs=65.1
Q ss_pred ccchHHHHHHhHHHHHHcccCcc----CCHHHHHhhcC---cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEECCCCcC
Q 006709 455 KVTDLSGIKQIIQPLVESGALVR----RTDEELLKALD---SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRG 527 (634)
Q Consensus 455 ~~~D~~~i~~l~~~~~~~~~~~~----~~~~~~~~~l~---~~~V~~~~g~iiG~~~l~~~~~~~~~ei~~l~V~p~~rg 527 (634)
+++|++.+..+++.........+ ...+.+.+.+. .++++..+|++||++.+.. +++..+=.......++.+
T Consensus 211 ~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~--~~~~LyGRYwG~~~~~~~ 288 (370)
T PF04339_consen 211 TDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLR--GDDTLYGRYWGCDEEIPF 288 (370)
T ss_pred CHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEE--eCCEEEEeeecccccccC
Confidence 44577777777765444332211 12334444442 3566778999999998873 334433333444455544
Q ss_pred CCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecHHhHHHHHhCCCeeccc
Q 006709 528 QGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 596 (634)
Q Consensus 528 qGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~~a~~~Y~k~GF~~~~~ 596 (634)
.- ++.|- =..+++|.+.|++.+..-+.. +-=..+||.+...
T Consensus 289 LH-----Fe~cY---------------------Yq~Ie~aI~~Gl~~f~~GaqG--EHK~~RGf~P~~t 329 (370)
T PF04339_consen 289 LH-----FELCY---------------------YQGIEYAIEHGLRRFEPGAQG--EHKIARGFEPVPT 329 (370)
T ss_pred cc-----hHHHH---------------------HHHHHHHHHcCCCEEECCcch--hHHHHcCCccccc
Confidence 22 33444 567788999999997776532 2224678887643
No 207
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=43.56 E-value=1.1e+02 Score=30.42 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=45.0
Q ss_pred EEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec-HHhHHHHHhCCCe
Q 006709 514 GEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFR 592 (634)
Q Consensus 514 ~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t-~~a~~~Y~k~GF~ 592 (634)
.||..|+.. +.|.+..|+ ..+.......|++.+.... .+.+.++.++|+.
T Consensus 88 vEvGnLAs~----~~g~~~~l~-------------------------~~l~~~L~~~g~~w~vfTaT~~lr~~~~rlgl~ 138 (179)
T PF12261_consen 88 VEVGNLASF----SPGAARLLF-------------------------AALAQLLAQQGFEWVVFTATRQLRNLFRRLGLP 138 (179)
T ss_pred eEeechhhc----CcccHHHHH-------------------------HHHHHHHHHCCCCEEEEeCCHHHHHHHHHcCCC
Confidence 678777754 588999999 8888999999999876655 4678899999998
Q ss_pred eccccc
Q 006709 593 ECSIEM 598 (634)
Q Consensus 593 ~~~~~~ 598 (634)
......
T Consensus 139 ~~~La~ 144 (179)
T PF12261_consen 139 PTVLAD 144 (179)
T ss_pred ceeccc
Confidence 776533
No 208
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=41.89 E-value=94 Score=34.12 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=51.3
Q ss_pred cCccchHHHHHHhHHHHHHcccC-------ccCCHHHHHhhcC------cE-EEEE--ECCeEEEEEEEeeec----C--
Q 006709 453 TAKVTDLSGIKQIIQPLVESGAL-------VRRTDEELLKALD------SF-YVVE--REGQIIACAALFPFF----K-- 510 (634)
Q Consensus 453 ~a~~~D~~~i~~l~~~~~~~~~~-------~~~~~~~~~~~l~------~~-~V~~--~~g~iiG~~~l~~~~----~-- 510 (634)
....+|..++.+++.-+.++.+. .+.+.|-+.-.+. .+ ..+. ...++|||+...|.. +
T Consensus 85 tldv~~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~ 164 (421)
T KOG2779|consen 85 TLDVSDFKDLEELYNLLNENYVEDDDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKV 164 (421)
T ss_pred ccCCccHhHHHHHHhhcccCCCCccccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccce
Confidence 34455666666665443333221 2334444433342 22 2222 357999999876532 1
Q ss_pred CCeEEEEEEEECCCCcCCCHHHHHH
Q 006709 511 EKCGEVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 511 ~~~~ei~~l~V~p~~rgqGiG~~Ll 535 (634)
-+.++|.-|+||...|+++++--|+
T Consensus 165 vk~veINFLCVHKkLRSKRlaPvLI 189 (421)
T KOG2779|consen 165 VKMVEINFLCVHKKLRSKRLAPVLI 189 (421)
T ss_pred eeeeeEEEEEEehhhhccccccHHH
Confidence 2468999999999999999999999
No 209
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=41.56 E-value=23 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred EEEEEEEECCCCcCCCHHHHHHhhh
Q 006709 514 GEVAAIGVSPECRGQGQGDKLLGLC 538 (634)
Q Consensus 514 ~ei~~l~V~p~~rgqGiG~~Ll~~~ 538 (634)
.-+++|-|.|-||++|+|+.|++..
T Consensus 261 yNlaCILtLPpyQRkGYGklLIdFS 285 (396)
T KOG2747|consen 261 YNLACILTLPPYQRKGYGKLLIDFS 285 (396)
T ss_pred cceeeeeecChhhhcccchhhhhhh
Confidence 3489999999999999999999443
No 210
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=41.56 E-value=1.5e+02 Score=25.86 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=47.4
Q ss_pred HHHHHHh-hhHHHhhcCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcc
Q 006709 84 VKWFREA-WPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (634)
Q Consensus 84 v~~~r~a-~pYi~~~r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~ 154 (634)
+..|++. ...+.+...+.+|+-+.+-..-|.. +..+.+-+..++..|.+++++ |-.+++.+.++..|+..
T Consensus 25 a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~-g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 25 AEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILT-GIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHHHhCCCh
Confidence 3345443 2444444557899999776655533 667777777788889887666 55678888998888764
No 211
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=41.28 E-value=90 Score=33.40 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=43.0
Q ss_pred chHHHHHHHHHhh-hHHHhhcCCeEEEEECCccCCCCC----------hHHHHHHHHHHHh-CCCeEEEEeCchH
Q 006709 79 EDEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY----------LDPILKDIAFLHH-LGIRFVLVPGTHV 141 (634)
Q Consensus 79 ~~~~~v~~~r~a~-pYi~~~r~k~iVIKLGGsvL~~~~----------l~~la~dIa~L~~-~G~kvVLVHGGG~ 141 (634)
....|...|++.. |-+.+|+...|||-.|--+...+. +..+.+.|..+.. ...++|+|.+||-
T Consensus 220 ~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY 294 (311)
T PF00850_consen 220 GDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGY 294 (311)
T ss_dssp BHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-S
T ss_pred chHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 3678999999997 889999999999999988876542 3444454444322 1238999999973
No 212
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=39.96 E-value=2.3e+02 Score=27.20 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=43.3
Q ss_pred HHhhcCCeEEEEECCccCCCCC---hHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHcCCc
Q 006709 94 LWAHRGGTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTH--VQIDKLLSERGHE 153 (634)
Q Consensus 94 i~~~r~k~iVIKLGGsvL~~~~---l~~la~dIa~L~~~G~kvVLVHGGG--~~I~~~l~~lg~~ 153 (634)
+.++.-+.+|+-+.|.....+. +..+.+-|..|++.|++++|+.++. ..+...++.+++.
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred HHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE
Confidence 3445557888999888775443 5677777888999999999999875 3345555677764
No 213
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=39.57 E-value=1e+02 Score=32.54 Aligned_cols=69 Identities=23% Similarity=0.185 Sum_probs=49.2
Q ss_pred EEEEEECCeEEEEEEEeeecCCCeEEE--EEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHH
Q 006709 490 FYVVEREGQIIACAALFPFFKEKCGEV--AAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKA 567 (634)
Q Consensus 490 ~~V~~~~g~iiG~~~l~~~~~~~~~ei--~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a 567 (634)
-.|..-+|++||+-.+.....+...++ -.-++||+|+.--.|+-|+=.=+ +.+.+.|
T Consensus 175 G~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni---------------------~~A~~~~ 233 (264)
T PF07395_consen 175 GSVLFLNGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSILMWLNI---------------------QDAWEYC 233 (264)
T ss_pred eeEEEECCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEEEEeeH---------------------HHHHHHH
Confidence 356778999999988876555444333 36689999999999999982223 5566677
Q ss_pred HHcCCcEEEEec
Q 006709 568 ASLGLDMLFLLT 579 (634)
Q Consensus 568 ~~~g~~~l~l~t 579 (634)
+++|....+-.-
T Consensus 234 ~~~~k~lrfSfG 245 (264)
T PF07395_consen 234 RAQGKPLRFSFG 245 (264)
T ss_pred HHhCCceEEEcC
Confidence 777766665443
No 214
>PTZ00346 histone deacetylase; Provisional
Probab=39.14 E-value=1e+02 Score=34.71 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=48.3
Q ss_pred chHHHHHHHHHhh-hHHHhhcCCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCch
Q 006709 79 EDEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTH 140 (634)
Q Consensus 79 ~~~~~v~~~r~a~-pYi~~~r~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG 140 (634)
....|...|++.. |-+.+|+...|||-.|--+...+- .+.+.+-+..+.+.+.++++|-|||
T Consensus 248 ~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGG 317 (429)
T PTZ00346 248 TDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGG 317 (429)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3678999999875 778999999999999998886543 3455555555667788999998886
No 215
>PF09582 AnfO_nitrog: Iron only nitrogenase protein AnfO (AnfO_nitrog); InterPro: IPR014287 Proteins in this entry include Anf1 from Rhodobacter capsulatus (Rhodopseudomonas capsulata) and AnfO from Azotobacter vinelandii. They are found exclusively in species which contain the iron-only nitrogenase, and are encoded immediately downstream of the structural genes for the nitrogenase enzyme in these species.
Probab=38.54 E-value=48 Score=33.53 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=51.7
Q ss_pred cccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecH--H-hHHHHHhCCCeecccccchh
Q 006709 539 IWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTT--R-TADWFKSRGFRECSIEMIPE 601 (634)
Q Consensus 539 i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~--~-a~~~Y~k~GF~~~~~~~~~~ 601 (634)
.|.+.+|..+.-....|-+++|..+.+....++-.++++... . +-.++++.||.....+..|.
T Consensus 31 ~W~~~~e~~f~~~~~~~l~~iR~~~~~li~~L~dCkifV~~~v~Gi~y~~Le~~g~~iWe~~G~p~ 96 (202)
T PF09582_consen 31 KWKVIREIPFELCDAKGLAEIRQKISELIEFLGDCKIFVAKSVSGIPYSLLEKAGFSIWESEGNPL 96 (202)
T ss_pred ceEEeEEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccccCccHHHHHHCCcEEEEECCCHH
Confidence 488888888888888899999999999999999999988762 2 45567999999887765554
No 216
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=37.45 E-value=46 Score=36.58 Aligned_cols=42 Identities=14% Similarity=0.364 Sum_probs=31.1
Q ss_pred eEEEEEEEeeecCC---CeEEEEEEEECCCCcCCCHHHHHHhhhc
Q 006709 498 QIIACAALFPFFKE---KCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (634)
Q Consensus 498 ~iiG~~~l~~~~~~---~~~ei~~l~V~p~~rgqGiG~~Ll~~~i 539 (634)
.++|+.+++.+..- ....|..+-+-|.||++|+|+.|++..+
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~ 243 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIA 243 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHH
Confidence 46788877754321 2356778899999999999999994444
No 217
>PHA00432 internal virion protein A
Probab=36.70 E-value=2.2e+02 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=13.7
Q ss_pred HHhHHHHHhCCCeecc
Q 006709 580 TRTADWFKSRGFRECS 595 (634)
Q Consensus 580 ~~a~~~Y~k~GF~~~~ 595 (634)
..+++|-+.+||+...
T Consensus 105 ~~hir~Lk~lGf~f~~ 120 (137)
T PHA00432 105 KSHIRFLKSIGAVFHN 120 (137)
T ss_pred HHHHHHHHHcCeeeec
Confidence 5799999999998754
No 218
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=34.63 E-value=1.3e+02 Score=32.22 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=35.4
Q ss_pred EEEEEECCeEEEEEEEeeecCCCeE--EEEEEEECCCCcCCCHHHHHH
Q 006709 490 FYVVEREGQIIACAALFPFFKEKCG--EVAAIGVSPECRGQGQGDKLL 535 (634)
Q Consensus 490 ~~V~~~~g~iiG~~~l~~~~~~~~~--ei~~l~V~p~~rgqGiG~~Ll 535 (634)
-.|..-+|++||+-.+......... +.-.-+|||+|..--.|+-|+
T Consensus 205 G~VLfl~~~PcA~qlv~k~eSp~wi~~D~iNgG~Dpe~~~~spGSIL~ 252 (298)
T PRK15312 205 GHILYIEGIPCAFDIVLKSESQMNVYFDVPNGAVKNECMPLSPGSILM 252 (298)
T ss_pred eeEEEECCcceEEEEEEEecCCCcEEEecccCccCcccccCCCccEEE
Confidence 3567789999999888755444433 333678999999999999998
No 219
>PHA02769 hypothetical protein; Provisional
Probab=31.42 E-value=42 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCcEEEEec--HHhHHHHHhCCCeecccc
Q 006709 561 DYIEKKAASLGLDMLFLLT--TRTADWFKSRGFRECSIE 597 (634)
Q Consensus 561 ~~i~~~a~~~g~~~l~l~t--~~a~~~Y~k~GF~~~~~~ 597 (634)
.++.++++.-|+.-++..- ..+..+|++.||++.+..
T Consensus 102 ~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~t 140 (154)
T PHA02769 102 NDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQT 140 (154)
T ss_pred HHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhccc
Confidence 3666777888888877665 357889999999997753
No 220
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=29.35 E-value=1.6e+02 Score=29.08 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=38.7
Q ss_pred EEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCchHH-HHHHHHHcCCc
Q 006709 102 FVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (634)
Q Consensus 102 iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGGG~~-I~~~l~~lg~~ 153 (634)
|+.=+.|.+++++. .....+.|..|++.|++++++.|-.+. +...++.+++.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 56668888887644 556778888899999999999998543 45556666654
No 221
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=29.20 E-value=1.8e+02 Score=31.28 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=40.3
Q ss_pred CCeEEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCchH-HHHHHHHHcCCc
Q 006709 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGGG~-~I~~~l~~lg~~ 153 (634)
+|.|+.=|.|.++.... .+...+.|..|++.|+.||+..|-.. .+..+.+++++.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 46788899999998544 56778889999999999999988632 234444555543
No 222
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=27.89 E-value=1.8e+02 Score=28.75 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=41.2
Q ss_pred CeEEEEECCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCchHH-HHHHHHHcCCc
Q 006709 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l-~~la~dIa~L~~~G~kvVLVHGGG~~-I~~~l~~lg~~ 153 (634)
|.++.=+.|.++.+.. + +...+.|..|++.|++++++.|=... +...++.++++
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 6778889999997654 3 67788899999999999999987543 34455666664
No 223
>TIGR02940 anfO_nitrog Fe-only nitrogenase accessory protein AnfO. Members of this protein family, called Anf1 in Rhodobacter capsulatus and AnfO in Azotobacter vinelandii, are found only in species with the Fe-only nitrogenase and are encoded immediately downstream of the structural genes in the above named species.
Probab=27.87 E-value=94 Score=31.80 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=48.7
Q ss_pred ccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEec--HH-hHHHHHhCCCeecccccch
Q 006709 540 WPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLT--TR-TADWFKSRGFRECSIEMIP 600 (634)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t--~~-a~~~Y~k~GF~~~~~~~~~ 600 (634)
|.+.+|..+.-....|-.++|..+.+...+++=.++++.. .. +..+++++||.....+.-|
T Consensus 31 W~~~~ei~~~v~~~~gl~~iR~~~~~~v~~L~dCkifva~~v~Gi~y~~Le~~g~~iWe~~G~~ 94 (214)
T TIGR02940 31 WKVLTRIENAVCPAKGLAAVRASLADMVKQLDDVRVFLASDIRGIANGLLQAMGVQIWLSEGPL 94 (214)
T ss_pred EEEEEEEEeccCcccCHHHHHHHHHHHHHhcCCcEEEEEeecCCccHHHHHHCCceEEEeCCCH
Confidence 7777777777777788888899999999999999998877 22 5667899999987664444
No 224
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=26.58 E-value=1.9e+02 Score=29.65 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=41.7
Q ss_pred CeEEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCchHH-HHHHHHHcCCc
Q 006709 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGGG~~-I~~~l~~lg~~ 153 (634)
|.++.=+.|.++.++. -+...+.|..|++.|++++++.|=... +...++++++.
T Consensus 3 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 6788889999997654 367788899999999999999887543 44556666664
No 225
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=25.65 E-value=1.8e+02 Score=29.62 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=44.2
Q ss_pred CeEEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCchH-HHHHHHHHcCCcc
Q 006709 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA 154 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGGG~-~I~~~l~~lg~~~ 154 (634)
|.+++=+.|-++.+.. -+...+.|..+++.|++++|+.|-.. .+...++++++..
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 4 KLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred eEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 6678889999988755 46778888889999999999999864 4667777888764
No 226
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=25.62 E-value=2e+02 Score=29.71 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=42.3
Q ss_pred CCeEEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCch-HHHHHHHHHcCCc
Q 006709 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHE 153 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGGG-~~I~~~l~~lg~~ 153 (634)
-|.++.=+.|.++.+.. .....+.|..|++.|++++|+.|-. ..+...++++++.
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 46788889999997443 5667778888999999999999874 3456667777765
No 227
>PLN02645 phosphoglycolate phosphatase
Probab=25.48 E-value=2e+02 Score=30.64 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=42.7
Q ss_pred CeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCch----HHHHHHHHHcCCc
Q 006709 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHE 153 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG----~~I~~~l~~lg~~ 153 (634)
+.+++=+.|-++.+.. +....+.|..|++.|++++++.+++ .++.+.++.+|++
T Consensus 29 ~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 29 ETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred CEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 7889899998887655 6778888999999999999999976 3344445677775
No 228
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=25.32 E-value=2e+02 Score=32.03 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=41.3
Q ss_pred CCCcchHHHHHHHHHhhhHHHhhcCCeEEEEECCc--------cCCCCChHHHHHHHHH-HHhCCCeEEEEeCch
Q 006709 75 YNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGE--------IVSSPYLDPILKDIAF-LHHLGIRFVLVPGTH 140 (634)
Q Consensus 75 g~~~~~~~~v~~~r~a~pYi~~~r~k~iVIKLGGs--------vL~~~~l~~la~dIa~-L~~~G~kvVLVHGGG 140 (634)
|-.+++++.+..+.+.+..-+.+.+++++|--|+. .|++..--.+-..|+. +...|.+|++|||-+
T Consensus 161 g~~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 161 GRLAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred CCCCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 34556777777776655332447889988877764 2333221224444554 667899999999875
No 229
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=25.16 E-value=3.3e+02 Score=29.37 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=62.0
Q ss_pred HHhhcCcEEEEEECCeEEEEEEEeeecCCC-----eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCc
Q 006709 483 LLKALDSFYVVEREGQIIACAALFPFFKEK-----CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFP 557 (634)
Q Consensus 483 ~~~~l~~~~V~~~~g~iiG~~~l~~~~~~~-----~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~ 557 (634)
+.+..+.-.++.-.+.+|+.+.+.|..... ...|..+.|..-|..-|+=..|+
T Consensus 164 l~~~~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~Li---------------------- 221 (304)
T PF11124_consen 164 LLENGKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLI---------------------- 221 (304)
T ss_pred hhhcCCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHH----------------------
Confidence 334444444444457899999998764332 26788999999999999999999
Q ss_pred chHHHHHHHHHH---------cCCcEEEEec------HHhHHHHHhCCCeecc-cccchh
Q 006709 558 FLRDYIEKKAAS---------LGLDMLFLLT------TRTADWFKSRGFRECS-IEMIPE 601 (634)
Q Consensus 558 ~~~~~i~~~a~~---------~g~~~l~l~t------~~a~~~Y~k~GF~~~~-~~~~~~ 601 (634)
+++.-++++ .|. .+.+.+ ....+..++.||+..+ ...+.+
T Consensus 222 ---dWA~~Rtr~l~~ey~k~k~~~-si~ll~d~YSFD~~~~k~L~~~gF~~i~ss~~ln~ 277 (304)
T PF11124_consen 222 ---DWAMLRTRQLYKEYLKGKKGC-SIKLLVDVYSFDKDMKKTLKKKGFKKISSSFKLNE 277 (304)
T ss_pred ---HHHHHHHHHHHHHhccccccc-eEEEEEEeeeccHHHHHHHHHCCCeeeecceecCC
Confidence 555333332 122 344433 4578899999999987 444443
No 230
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=25.11 E-value=1.4e+02 Score=29.63 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=37.9
Q ss_pred eEEEEEEEECCCCcCCCHHHHHHhhhcccccccccccccccCCCcchHHHHHHHHHHcCCcEEEEecH-HhHHHHHhCC
Q 006709 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRDYIEKKAASLGLDMLFLLTT-RTADWFKSRG 590 (634)
Q Consensus 513 ~~ei~~l~V~p~~rgqGiG~~Ll~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~g~~~l~l~t~-~a~~~Y~k~G 590 (634)
.+|+.-.+|.||.+|.||+..+- .+--..+++|+.--|-.+. ..++.|++++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~r--------------------------~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSMR--------------------------VMYPVLQELGVPFGFGTVRHALRNHVERLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhhh--------------------------hhhhHHHhcCCCeecccchHHHHHHHHHHh
Confidence 37888889999999999998654 4555666788888777773 3445566554
No 231
>PTZ00174 phosphomannomutase; Provisional
Probab=24.68 E-value=1.2e+02 Score=30.88 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCeEEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCc
Q 006709 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGT 139 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGG 139 (634)
.|.|+.=+.|.++.++. -+...+.|..+++.|+++||..|-
T Consensus 5 ~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR 47 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGS 47 (247)
T ss_pred CeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46788899999998755 366788899999999999999886
No 232
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=24.62 E-value=1.9e+02 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCcEEEEec---HHhHHHHHhCCCeecccccchh
Q 006709 571 GLDMLFLLT---TRTADWFKSRGFRECSIEMIPE 601 (634)
Q Consensus 571 g~~~l~l~t---~~a~~~Y~k~GF~~~~~~~~~~ 601 (634)
++..+-+.+ ..+.+||+++||+......++.
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~ 36 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEG 36 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccCh
Confidence 355666666 5789999999998876554443
No 233
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=24.44 E-value=1.6e+02 Score=27.44 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCeEEEEECCccCCCCC--------hHHHHHHHHHHHhCCCeEEEEeCc
Q 006709 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGT 139 (634)
Q Consensus 99 ~k~iVIKLGGsvL~~~~--------l~~la~dIa~L~~~G~kvVLVHGG 139 (634)
+|.+++=+.|.++.+.. .....+.|..|++.|+++|+++|=
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR 49 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSR 49 (126)
T ss_pred CCEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 47888999998886421 356777788888899999998875
No 234
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=24.42 E-value=3.1e+02 Score=25.05 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=30.7
Q ss_pred EECCeEEEEEEEeeec-----CCCeEEEEEEEECCCCcC-CCHHHHHH
Q 006709 494 EREGQIIACAALFPFF-----KEKCGEVAAIGVSPECRG-QGQGDKLL 535 (634)
Q Consensus 494 ~~~g~iiG~~~l~~~~-----~~~~~ei~~l~V~p~~rg-qGiG~~Ll 535 (634)
..++..=|++.+.+-. ....++|..++|.+.-|| .|+++.+.
T Consensus 15 y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf 62 (108)
T cd04266 15 IIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILF 62 (108)
T ss_pred EEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHH
Confidence 3345555566665321 145689999999999997 89999999
No 235
>PRK10976 putative hydrolase; Provisional
Probab=23.90 E-value=2.2e+02 Score=28.94 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=41.5
Q ss_pred CeEEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCchHH-HHHHHHHcCCc
Q 006709 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGGG~~-I~~~l~~lg~~ 153 (634)
|.+++=+.|-++.+.. -+...+.|..|++.|++++|+.|=... +...++.+++.
T Consensus 3 kli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 6788889999997644 366788899999999999999987543 34456667665
No 236
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=23.87 E-value=4.7e+02 Score=23.31 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=51.1
Q ss_pred HHHHHHhhh-HHHhhcCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCcccc
Q 006709 84 VKWFREAWP-YLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY 156 (634)
Q Consensus 84 v~~~r~a~p-Yi~~~r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~~~~ 156 (634)
+..|++... ++..-..+.+||=+.+-..-+.. +..++.....++..|.+++|+ |-.|.+.+.+...|+...+
T Consensus 28 a~~~~e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~-~i~p~v~~~~~~~gl~~~~ 101 (117)
T COG1366 28 APALKETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLV-GIQPEVARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHHHHhCchhhc
Confidence 344555444 55655556688888876554433 777888888888899887776 6779999999999987543
No 237
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=23.76 E-value=2.2e+02 Score=28.93 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=41.7
Q ss_pred CeEEEEECCccCCCCC--hHHHHHHHHHHHhCCCeEEEEeCchHH-HHHHHHHcCCc
Q 006709 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~--l~~la~dIa~L~~~G~kvVLVHGGG~~-I~~~l~~lg~~ 153 (634)
|.|+.=+.|-++.++. -....+.|..+++.|++++|..|=... +...++++++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 4 RVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred cEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 6788899999997654 456788899999999999999986543 44556666654
No 238
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=1.6e+02 Score=34.26 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=37.6
Q ss_pred cccccccCccchHHHHHHhHHHHH-HcccCccCC-HHHH-Hhhc---------CcEEEEEEC-CeEEEEEEEe
Q 006709 447 LYEGTRTAKVTDLSGIKQIIQPLV-ESGALVRRT-DEEL-LKAL---------DSFYVVERE-GQIIACAALF 506 (634)
Q Consensus 447 ~Ye~iR~a~~~D~~~i~~l~~~~~-~~~~~~~~~-~~~~-~~~l---------~~~~V~~~~-g~iiG~~~l~ 506 (634)
+|-.|||.+..|-+.+..+.+.+. ..+...+.. ...+ .+.+ +.++|++++ ++||||+...
T Consensus 678 ~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~ 750 (891)
T KOG3698|consen 678 MFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAH 750 (891)
T ss_pred eeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeee
Confidence 455799999999999999876654 444433321 1122 2222 356666654 6699998753
No 239
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=23.41 E-value=44 Score=36.41 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCccccccccccccccCccchHHHHHHhHHHHHHcccCccCCHHHHHhhcC--cEEEEEECC----eEEEEEEEeeecCC
Q 006709 438 GMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALD--SFYVVEREG----QIIACAALFPFFKE 511 (634)
Q Consensus 438 g~GT~I~~D~Ye~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~--~~~V~~~~g----~iiG~~~l~~~~~~ 511 (634)
-.|-.+++|.|..++...-.-..-.-+=+. +...-++.. ..+.-..+ -|||..+-| ++|||..=.. ...
T Consensus 186 pPG~eiYrD~~iS~~EiDG~~q~~~CrnLC-LlsKlFLd~---KtLYyDVDpflFYvl~~~~~~~~h~vGyFSKEK-~S~ 260 (395)
T COG5027 186 PPGNEIYRDKYISFFEIDGRKQRLYCRNLC-LLSKLFLDH---KTLYYDVDPFLFYVLTERGDTGCHLVGYFSKEK-ESE 260 (395)
T ss_pred CCCceeeecCceEEEEEcCcchhhHHHHHH-HHHHHHhcC---ceeEEeccceEEEEEEEcCCcceeeeeeechhh-ccc
Confidence 457777888887776654432222111000 001111111 11111223 356655422 3566544331 122
Q ss_pred CeEEEEEEEECCCCcCCCHHHHHHhhhc
Q 006709 512 KCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (634)
Q Consensus 512 ~~~ei~~l~V~p~~rgqGiG~~Ll~~~i 539 (634)
...-+++|-+.|-||++|+|+-|++..-
T Consensus 261 ~~yNLaCILtLP~yQRrGYG~lLIdFSY 288 (395)
T COG5027 261 QDYNLACILTLPPYQRRGYGKLLIDFSY 288 (395)
T ss_pred ccCceEEEEecChhHhcccceEeeeeee
Confidence 3356889999999999999999995544
No 240
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.16 E-value=1.3e+02 Score=30.51 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCchH-HHHHHHHHcCCcc
Q 006709 119 ILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA 154 (634)
Q Consensus 119 la~dIa~L~~~G~kvVLVHGGG~-~I~~~l~~lg~~~ 154 (634)
..+-++.+++.|++++||+||-. .+..+.+.+|++.
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 44445567889999999999976 4577777888764
No 241
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=23.08 E-value=4.2e+02 Score=24.57 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCch----------------HHHHHHHHHcCCc
Q 006709 116 LDPILKDIAFLHHLGIRFVLVPGTH----------------VQIDKLLSERGHE 153 (634)
Q Consensus 116 l~~la~dIa~L~~~G~kvVLVHGGG----------------~~I~~~l~~lg~~ 153 (634)
...+.+-|..|++.|++++|+.++. ..+...++.+++.
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 3456777888899999999999864 2455667778875
No 242
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.03 E-value=2.3e+02 Score=29.15 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=40.7
Q ss_pred CeEEEEECCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCchHH-HHHHHHHcCCc
Q 006709 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l-~~la~dIa~L~~~G~kvVLVHGGG~~-I~~~l~~lg~~ 153 (634)
+.|+.=+.|.++.++. + +...+.|..|++.|+++||..|-... +...+++++++
T Consensus 8 ~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 8 LLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred eEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 5677789999997654 3 66778899999999999999987532 44456666653
No 243
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=22.36 E-value=2.6e+02 Score=27.50 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=33.3
Q ss_pred CeEEEEECCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCch
Q 006709 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTH 140 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l-~~la~dIa~L~~~G~kvVLVHGGG 140 (634)
|.++.=+.|.++.+.. + +...+.|..|++.|++++++.|-.
T Consensus 2 k~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~ 44 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNT 44 (215)
T ss_pred cEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 5677788999987644 3 677888999999999999999874
No 244
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=21.98 E-value=1.9e+02 Score=32.11 Aligned_cols=65 Identities=9% Similarity=0.217 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhh-hHHHhhcCCeEEEEECCccCCCCC-------hHHHHHHHHHHHhCCCeEEEEeCchHHHH
Q 006709 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQID 144 (634)
Q Consensus 80 ~~~~v~~~r~a~-pYi~~~r~k~iVIKLGGsvL~~~~-------l~~la~dIa~L~~~G~kvVLVHGGG~~I~ 144 (634)
++.+-..|+-.. |-+..|+..-||+..|+-.|..+. ++...+-+...++.+..+.+|=|||-.+.
T Consensus 233 D~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~r 305 (425)
T KOG1342|consen 233 DESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLR 305 (425)
T ss_pred cHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchh
Confidence 566777666543 557889999999999999987654 57888888899999988777766664443
No 245
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.57 E-value=5.2e+02 Score=22.16 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=38.5
Q ss_pred cCCeEEEEECCccCCCCC-hHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHcCCc
Q 006709 98 RGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHE 153 (634)
Q Consensus 98 r~k~iVIKLGGsvL~~~~-l~~la~dIa~L~~~G~kvVLVHGGG~~I~~~l~~lg~~ 153 (634)
..+.+|+-+.+-..-|.. +..+.+-+..+++.|.+++++ +-.+++...++..|+.
T Consensus 38 ~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~-~~~~~v~~~l~~~gl~ 93 (100)
T cd06844 38 AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLT-GISPAVRITLTESGLD 93 (100)
T ss_pred CCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEE-CCCHHHHHHHHHhCch
Confidence 357888888765444433 666666666788889887776 4557888888877765
No 246
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=21.11 E-value=1.5e+02 Score=30.16 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=40.8
Q ss_pred CeEEEEECCccCCCCC-h-HHHHHHHHHHHhCCCeEEEEeCchHH-HHHHHHHcCCc
Q 006709 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (634)
Q Consensus 100 k~iVIKLGGsvL~~~~-l-~~la~dIa~L~~~G~kvVLVHGGG~~-I~~~l~~lg~~ 153 (634)
|.++.=+.|.++.+.. + +...+.|..|++.|++++|+.|-... +...++++++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 4 KLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred EEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 6788899999997654 3 66788899999999999999886433 34455666653
No 247
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.59 E-value=2.9e+02 Score=30.20 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=47.3
Q ss_pred chHHHHHHHHH-hhhHHHhhcCCeEEEEECCccCCCCC----------hHHHHHHHHHHHh-CCCeEEEEeCchHH
Q 006709 79 EDEQFVKWFRE-AWPYLWAHRGGTFVVIISGEIVSSPY----------LDPILKDIAFLHH-LGIRFVLVPGTHVQ 142 (634)
Q Consensus 79 ~~~~~v~~~r~-a~pYi~~~r~k~iVIKLGGsvL~~~~----------l~~la~dIa~L~~-~G~kvVLVHGGG~~ 142 (634)
....|...|.+ +.|-+..|+...|||-.|--+...+. +..+.+.|..+.. .+.+++.|-+||-.
T Consensus 219 ~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~ 294 (340)
T COG0123 219 GDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYN 294 (340)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCC
Confidence 36789999999 78899999999999999988775532 3344444444322 26789999999643
Done!