Query 006710
Match_columns 634
No_of_seqs 366 out of 2521
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 7.9E-31 2.7E-35 287.7 39.1 451 64-613 8-478 (491)
2 2xut_A Proton/peptide symporte 100.0 9.3E-32 3.2E-36 297.6 21.6 482 67-616 10-512 (524)
3 4gc0_A D-xylose-proton symport 100.0 6.3E-30 2.2E-34 280.3 25.8 421 104-629 54-485 (491)
4 1pw4_A Glycerol-3-phosphate tr 100.0 8.8E-28 3E-32 259.8 26.2 403 66-609 25-436 (451)
5 3o7q_A L-fucose-proton symport 100.0 4.9E-25 1.7E-29 237.4 40.1 357 65-565 22-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 2.7E-23 9.1E-28 219.4 22.5 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.9 6.6E-23 2.2E-27 220.2 15.6 394 70-611 8-404 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 4.8E-13 1.6E-17 143.9 17.7 178 69-278 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.7E-11 5.8E-16 131.3 20.0 166 70-273 259-426 (438)
10 2cfq_A Lactose permease; trans 99.3 1.3E-11 4.4E-16 132.0 16.6 173 71-278 222-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.3E-10 4.3E-15 126.7 12.0 185 71-282 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 1.7E-08 5.7E-13 109.7 23.5 184 71-285 278-468 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.3E-09 4.6E-14 114.0 5.7 164 69-266 199-363 (375)
14 2xut_A Proton/peptide symporte 98.4 1.1E-06 3.9E-11 96.0 13.6 137 418-605 57-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=7.9e-31 Score=287.65 Aligned_cols=451 Identities=19% Similarity=0.223 Sum_probs=305.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchhH
Q 006710 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYW 137 (634)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr-~~GRr~ 137 (634)
.+++++.++.+.+..++..+++|++..+++.|++++ +|.+..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345677889999999999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC
Q 006710 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (634)
Q Consensus 138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~ 217 (634)
++.++.++..++.++++++ .+.+.++++|+++|++.+...+...++++|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 9999999999998888775 567889999999999999999999999999999
Q ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccC---CC-CCCcH
Q 006710 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LP-GGSPL 293 (634)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~-~~~~~ 293 (634)
+++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...++...+ ++ +....
T Consensus 139 ~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
T 4aps_A 139 EHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP 214 (491)
T ss_dssp SCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH
T ss_pred ccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcccc
Confidence 88733 777888899999999999999999999999999999998877666666555443332211 11 11111
Q ss_pred HHHHHHHHH--------HHhhhcccccccccccccccCCCccccCCCcccccCCc-chHHHHHHhhhccccCCCCCCccc
Q 006710 294 TRVAQVLVA--------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD-FRCLDKAALELKEDVINPSPWKLC 364 (634)
Q Consensus 294 ~~~~~v~~~--------a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ 364 (634)
.+..+.... +..... +...++. ..++... .............. ..|+..
T Consensus 215 ~~~~~~~~~~g~~l~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 272 (491)
T 4aps_A 215 EEVKPLLVKVSLAVAGFIAIIVV----------MNLVGWN--------SLPAYINLLTIVAIAIPVFYFA----WMISSV 272 (491)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHH----------HHHHSSC--------CTTHHHHHHHHHHHHHHHHHHH----HHC---
T ss_pred chhHHHHHHHHHHHHHHHHHHHH----------HHhccCc--------ccccchhhhhHHHHHHHHHHHH----HHhhcc
Confidence 111110000 000000 0000000 0000000 00000000000000 000000
Q ss_pred cchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhh-cccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhh
Q 006710 365 TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLC 443 (634)
Q Consensus 365 ~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 443 (634)
.. ...++++......+++....++..+.+..+.+..+... .+.. ....+.+..++.+..++..++.+++.||++
T Consensus 273 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 273 KV-TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred cc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 00 01233444444555566666777776666654443322 1211 134667778888888899999999999998
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 006710 444 RRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGL 523 (634)
Q Consensus 444 rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~ 523 (634)
||. ......+.+|.++.+++++++....... + ...+ .+.+++++.+++.++++++..+..
T Consensus 348 ~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~ 407 (491)
T 4aps_A 348 KNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGK-VSPLWLVGSWALVILGEMLISPVG 407 (491)
T ss_dssp TC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTT-CCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred ccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCC-ccHHHHHHHHHHHHHHHHHHhHHH
Confidence 873 3455667788888888887766554220 0 0001 366778888899999999999999
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHH
Q 006710 524 LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF 603 (634)
Q Consensus 524 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~ 603 (634)
++++.+.+|++.||.++|+.++..++|+.+++.+.+.+.+.. +...|+++++++++..++.
T Consensus 408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS-------------------EVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-------------------TTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765421 2356777888888777777
Q ss_pred HHhhccceec
Q 006710 604 LYSAYRYKYR 613 (634)
Q Consensus 604 ~~~~~~~~~~ 613 (634)
+++.++.+++
T Consensus 469 ~~~~~~~~~~ 478 (491)
T 4aps_A 469 VFLSKRIQGL 478 (491)
T ss_dssp HHC-------
T ss_pred HHHHHHHHHH
Confidence 7776655543
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.98 E-value=9.3e-32 Score=297.64 Aligned_cols=482 Identities=21% Similarity=0.335 Sum_probs=289.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 006710 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (634)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~ 140 (634)
+++.++.+.+..++.++++|++..+++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44556778888999999999999999999999999 999999999999999999999999999999559999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCC
Q 006710 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (634)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~ 219 (634)
++.++..++.++++++ . +.+.++++|+++|++.+...+...++++|++|++
T Consensus 90 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp HHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 9999999998888876 4 6788999999999999999999999999999998
Q ss_pred Ccchhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHH
Q 006710 220 SKDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296 (634)
Q Consensus 220 ~~~~~~~r~~---~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (634)
+ |++ .+++++.+.++|..++|.+++++.+..||++.|++.++..++..+.++...+..+.+++++++..+.
T Consensus 142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (524)
T 2xut_A 142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215 (524)
T ss_dssp T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence 8 754 4555888999999999999999998899999999988877666665554444333322222221121
Q ss_pred HHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHH---hhhccccCCCCCCc-------cccc
Q 006710 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA---LELKEDVINPSPWK-------LCTV 366 (634)
Q Consensus 297 ~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~-------~~~~ 366 (634)
.+.+..+.+++..+.+ .... +..... .........+.+....+.... ....+ .....+|+ ....
T Consensus 216 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 289 (524)
T 2xut_A 216 LPVIRSALLTKVEGKG-NIGL-VLALIG---GVSAAYALVNIPTLGIVAGLCCAMVLVMG-FVGAGASLQLERARKSHPD 289 (524)
T ss_dssp -----------CTTHH-HHHH-HHHHHH---HHHHHHTGGGTTTTCSSHHHHHHHHHHHH-HHHTGGGTHHHHSCCSCCS
T ss_pred HHHHHHHHhhhhcccC-ccch-hhhhhh---hhhhhhhhcccchhhhhhhhhhhhhhhhc-ccccchhhHHhhhhccccH
Confidence 1222222221110000 0000 000000 000000000000000000000 00000 00001110 0011
Q ss_pred hhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccc
Q 006710 367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRI 446 (634)
Q Consensus 367 ~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~ 446 (634)
...+++++......++.....++..+.+..+.+..+...++... + .+.+.+..++.+..++..++.+++..+..+|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (524)
T 2xut_A 290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERM 366 (524)
T ss_dssp SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence 11123344444444444455555555565566655554443321 1 13444555555666666666665543333332
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006710 447 TGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF 526 (634)
Q Consensus 447 ~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~ 526 (634)
.++ .+..+.+.+|+++.+++++++....... .+ ... .+.+++++.+++.++++++..+..+++
T Consensus 367 ~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~--------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 367 GVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----DG--------GSA-LSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp -------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----TT--------TCC-CCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----cC--------CCC-cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 4556667788888888776655432100 00 001 356777888999999999999999999
Q ss_pred HHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccc-CCccchhhHHHHHHHHHHHHHHHHHHH
Q 006710 527 LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLY 605 (634)
Q Consensus 527 ~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~~~~v~~~~~~~ 605 (634)
+.+.+|++.||+++|++++..++|+.+++.+.+.+.+.++ .+|... +.+. ..+.|++.+++++++.+++++
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765221 123211 0111 123377788888888888777
Q ss_pred hhccceecccc
Q 006710 606 SAYRYKYRSEQ 616 (634)
Q Consensus 606 ~~~~~~~~~~~ 616 (634)
+.+++++++.+
T Consensus 502 ~~~~~~~~~~~ 512 (524)
T 2xut_A 502 YARSYQMQDHY 512 (524)
T ss_dssp -----------
T ss_pred HHHHhccchhh
Confidence 77776655443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=6.3e-30 Score=280.32 Aligned_cols=421 Identities=14% Similarity=0.067 Sum_probs=248.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcc
Q 006710 104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (634)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (634)
..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++............ -...-
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~----------~~~~~ 122 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNT----------VPVYL 122 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSS----------CCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhH----------HHHHH
Confidence 45678899999999999999999999998 99999999999999999999864211100000000 00001
Q ss_pred chhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 006710 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 255 (634)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~-------- 255 (634)
..+..+++++|+++|+|.|+..+..+++++|..|++. |++..++++.+..+|..+++.++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 1678999999999999999999999999999999999 99999999999999999998877666432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCccc
Q 006710 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI 335 (634)
Q Consensus 256 ~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 335 (634)
.+|++.+.+..+..++.++..+. .||+|+| +..+++.+++.+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~-L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRW-LMSRGKQEQAEGILRKI 243 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHH-HHHTTCHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHH-HHHcCchhHHHHhHHHh
Confidence 23666555544443333322211 4666666 55544443332222211
Q ss_pred ccCCcch--HHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-HHHHHHHHHHHHhhhhHHHHHHhhcccCCCC
Q 006710 336 AHTDDFR--CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVILTEFLTLSVQQAYTMNTHMGK 412 (634)
Q Consensus 336 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (634)
...+... ..+......... +.... ......++....... ++.+.........+.+ ...+..+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----- 310 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHGR--KTGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAP-EVFKTLGAS----- 310 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHSSCC-----
T ss_pred cCCchhHHHHHHHHHHHHhhh--hhhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcch-HHHHhcCCC-----
Confidence 1110000 000000000000 00000 000001111111111 1111111111111111 111111111
Q ss_pred ccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccc
Q 006710 413 LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS 492 (634)
Q Consensus 413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (634)
.........+..+..++...+..++.||++||. .+..+...++++++.++.....
T Consensus 311 -~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~------------- 365 (491)
T 4gc0_A 311 -TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT------------- 365 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc-------------
Confidence 111222344455666677778888999998884 3566777777776665544321
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCC
Q 006710 493 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQ 572 (634)
Q Consensus 493 ~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~ 572 (634)
. . .+...++..+++.........+..+.+..|.+|.+.|++++|+.+..+++++++++.+.+.+.+..
T Consensus 366 ---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~------- 433 (491)
T 4gc0_A 366 ---Q-A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS------- 433 (491)
T ss_dssp ---T-C-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------
T ss_pred ---c-c-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 0 1 122223322332333333345677889999999999999999999999999999999888764311
Q ss_pred CCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceeccccCCCCchhhhhhcc
Q 006710 573 PNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKL 629 (634)
Q Consensus 573 ~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (634)
|.. ...+....|+++++++++..++.+++.+|+|+|++||+++.++++..+.
T Consensus 434 --~~~---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 434 --WLV---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp --HHH---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred --HHH---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence 100 0001235688899999999999999999999999999888887654443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=8.8e-28 Score=259.81 Aligned_cols=403 Identities=12% Similarity=0.006 Sum_probs=262.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006710 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (634)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~ 145 (634)
.+|+.++...+..+...+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 4466677777777777776665555555 445567 9999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHH----hhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCc
Q 006710 146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (634)
Q Consensus 146 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (634)
..++.+++++ + .+.+.++++|+++|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE- 152 (451)
T ss_dssp HHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred HHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence 9999999888 5 567789999999999999999999999999999988
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHH
Q 006710 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300 (634)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 300 (634)
|++.+++++.+.++|..++|.+++++.+..| |++.|++.++..++..++.+...++.+.+....+
T Consensus 153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 218 (451)
T 1pw4_A 153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP--------- 218 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---------
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---------
Confidence 9999999999999999999999999888888 9999999887766655554444333211110000
Q ss_pred HHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh
Q 006710 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP 380 (634)
Q Consensus 301 ~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~ 380 (634)
.+++ +....+ ..... ..+...++.....+....+.+....
T Consensus 219 -------------~~~~---~~~~~~-------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (451)
T 1pw4_A 219 -------------IEEY---KNDYPD-------DYNEK----------------AEQELTAKQIFMQYVLPNKLLWYIA- 258 (451)
T ss_dssp -------------CTTT---CCC------------------------------------CCTHHHHHHTSSCHHHHHHH-
T ss_pred -------------hhhh---cccccc-------cchhh----------------hhcccccccchHHHHHcCHHHHHHH-
Confidence 0000 000000 00000 0000000000000000011221111
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhh--hccccCCCCCCChhHH
Q 006710 381 IPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPL--CRRITGHPRGASQLQR 458 (634)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~rr~~~~~~~~~~~~~ 458 (634)
+.....+..+......+..+ +....+.-....+.+.....+..++..++.+++.||+ .+|. .
T Consensus 259 --~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~ 322 (451)
T 1pw4_A 259 --IANVFVYLLRYGILDWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------A 322 (451)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH---BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------H
T ss_pred --HHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------h
Confidence 11111111111111222211 1111110011223445555666777788888888887 5552 2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 006710 459 VGIGLAVSI-LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 537 (634)
Q Consensus 459 i~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 537 (634)
+.++.++.. ++++++.... . .+.+.+....++.|++.....+....++.+.+|++.||
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 381 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMNP--------------------A-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG 381 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------------------T-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------------c-cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh
Confidence 444444433 4443332211 0 24555666677788888888888899999999999999
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 006710 538 IGSAYAALAGGL-GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 609 (634)
Q Consensus 538 ~~~g~~~~~~~i-g~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~ 609 (634)
+++|+.+...++ |..+++.+.+.+.+..+ +...|++.+++.+++.++.++..++
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSC------------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999 99999999998876432 3466777777777777766655443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=4.9e-25 Score=237.45 Aligned_cols=357 Identities=8% Similarity=-0.042 Sum_probs=241.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006710 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (634)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~ 144 (634)
+++++.++.+.+..+...+....+... ..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 455666777777777777766544444 5557889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHH---HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCc
Q 006710 145 IYLAGLTGI---TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (634)
Q Consensus 145 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~ 221 (634)
+..++.+++ ..+ .+.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI----------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-
T ss_pred HHHHHHHHHHhcccc----------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh-
Confidence 999999888 443 578899999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHHHHHH
Q 006710 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNML 275 (634)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~-~~~g-------------------------w~~~f~~~~~~~~i~~~~ 275 (634)
|++.+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..++
T Consensus 151 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 151 -----GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5444 999998766655544444
Q ss_pred HHHhc-cccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccc
Q 006710 276 FFIGT-PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354 (634)
Q Consensus 276 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 354 (634)
++..+ ++.+.+++++ + ++. +..+....
T Consensus 226 ~~~~~~p~~~~~~~~~-----------------------------------~-----------~~~-~~~~~~~~----- 253 (438)
T 3o7q_A 226 IMLTKFPALQSDNHSD-----------------------------------A-----------KQG-SFSASLSR----- 253 (438)
T ss_dssp HHHCCCCCCTTTCCCC-----------------------------------S-----------STT-SHHHHHHH-----
T ss_pred HHHHcCCccccccccc-----------------------------------c-----------ccc-chhhhHHH-----
Confidence 33321 1100000000 0 000 00000000
Q ss_pred cCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHH
Q 006710 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSL 434 (634)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 434 (634)
.. ++++.....+..++..........+.+.++..+..+.+. ...+.+..+..+..++..++
T Consensus 254 ---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~ 314 (438)
T 3o7q_A 254 ---------LA----RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFT 314 (438)
T ss_dssp ---------HT----TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HH----hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHH
Confidence 00 001111111111111111111212221221222112221 12334455556667777888
Q ss_pred HHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHH
Q 006710 435 YYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGI 514 (634)
Q Consensus 435 ~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~ 514 (634)
.+++.||+.||. .+.++.++.+++++++.... + .+.+..+++.++
T Consensus 315 ~g~l~~r~~~~~-----------~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~g~ 359 (438)
T 3o7q_A 315 GTWLISRFAPHK-----------VLAAYALIAMALCLISAFAG-----------------------G-HVGLIALTLCSA 359 (438)
T ss_dssp HHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHCC-----------------------H-HHHHHHHHHHHH
T ss_pred HHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHcC-----------------------C-cHHHHHHHHHHH
Confidence 888888877663 35666666666655443321 2 233444577788
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc
Q 006710 515 AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 565 (634)
Q Consensus 515 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~ 565 (634)
+.+...+...++..+..|++ ++.+.++.. ...+|+.+++.+.+.+.+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 360 FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999977 999999888 67799999999999887743
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=2.7e-23 Score=219.42 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006710 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (634)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~ 151 (634)
+.+.+..++..+......+.++. +.+++|.+.++.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 44555666666666555555554 5678999999999999999999999999999999998 999999999999999998
Q ss_pred HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006710 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (634)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (634)
++.++ .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88886 678899999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 006710 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (634)
Q Consensus 232 ~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~ 274 (634)
++++.+.++|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887766544443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=6.6e-23 Score=220.23 Aligned_cols=394 Identities=11% Similarity=-0.033 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006710 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (634)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~ 149 (634)
..+......++..+++..+.++++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 456666666666677777778999999999999999999999999999999999999999998 9999999988876553
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006710 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (634)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (634)
...+...... ... ..++.++++.+++.+...+...+...+..++.. ..|+
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 3222111000 000 012233444444433333333333333332211 0156
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhc
Q 006710 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH 308 (634)
Q Consensus 229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~ 308 (634)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+...++ +++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~----------------- 195 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSA----------------- 195 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSS-----------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----ccccc-----------------
Confidence 66677777788999999999999876 589999887655433322221111111 00000
Q ss_pred ccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHH
Q 006710 309 AAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388 (634)
Q Consensus 309 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~ 388 (634)
+ . ++.. + ...++.+..+.... + .+ +.+.............
T Consensus 196 -------~--~-----~~~~-~-----~~~~~~~~~~~~~~--------------~-----~~-~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 196 -------T--V-----ANAV-G-----ANHSAFSLKLALEL--------------F-----RQ-PKLWFLSLYVIGVSCT 235 (417)
T ss_dssp -------C--S-----SSSS-S-----SCCCCCCHHHHHHH--------------T-----TC-HHHHHHHHHHHHHHHH
T ss_pred -------c--c-----cccc-c-----cccccccHHHHHHH--------------h-----cC-CchhhHHHHHHHHHHH
Confidence 0 0 0000 0 00000000000000 0 01 1111111111111112
Q ss_pred HHHHHhhhhHHHHHHhhcccCCCCc-cccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHH
Q 006710 389 NVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467 (634)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~ 467 (634)
+..+.+....+.... .... +. ....+.+..++.+..++...+.+++.||++||. .+.++.++.+
T Consensus 236 ~~~~~~~~~~~~~~~--~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~ 300 (417)
T 2cfq_A 236 YDVFDQQFANFFTSF--FATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHT--SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHH
Confidence 222222222222111 1100 00 001123344455556667778888889888773 2555666665
Q ss_pred HHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHH
Q 006710 468 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALA 546 (634)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~ 546 (634)
++++.+... .+.+.+++..++.+++.....+....+..+..|++.||++.++ ++..
T Consensus 301 ~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 357 (417)
T 2cfq_A 301 VRIIGSSFA-----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF 357 (417)
T ss_dssp HHHHHHTTC-----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 554433221 1334444455556677777777788999999999999999999 4888
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccce
Q 006710 547 GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 611 (634)
Q Consensus 547 ~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~ 611 (634)
+++|+.+++.+.+.+.+.. ++...|++.+++.+++.++.++..++++
T Consensus 358 ~~lg~~~gp~l~G~l~~~~------------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 358 KQLAMIFMSVLAGNMYESI------------------GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHTHHHHTHHHHS------------------HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HhHHHHHhhhhHHHHHHhc------------------CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 8999999999999776522 2345677778887777776666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=4.8e-13 Score=143.89 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Q 006710 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL 147 (634)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~-GRr~~i~~~~~~~~ 147 (634)
+.++...+..++..+.++++..+++.|+++.+|++..++++..+.+.++..++.+++|+++||+. |||+.+.++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45777888888888899999999999999889999999999999999999999999999999942 88888887776655
Q ss_pred -HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006710 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (634)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~ 226 (634)
++.+++.+. +. .+.+.+.+..++.|++.+...+...+++.|.+|++.
T Consensus 332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 379 (451)
T 1pw4_A 332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 379 (451)
T ss_dssp HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence 444433332 10 255667777788999999989999999999999998
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006710 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (634)
Q Consensus 227 r~~~~~~~~~~~~l-g~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 278 (634)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999888777666665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=1.7e-11 Score=131.28 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006710 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (634)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~ 148 (634)
.++...+..++.....+++..+++.| +++.+|.+..++++..+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 36666667777777888888999999 8888899999999999999999999999999999998 999999999988888
Q ss_pred HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006710 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (634)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (634)
+.+++.+. .+... ++..++.|++.+...+...++..|.+|++ |+
T Consensus 338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77766664 23333 33447889999999999999999999854 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHH
Q 006710 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN 273 (634)
Q Consensus 229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~ 273 (634)
.+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.+
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5555544 556999999999999999988 9988887665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=1.3e-11 Score=132.00 Aligned_cols=173 Identities=10% Similarity=0.053 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006710 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (634)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~ 147 (634)
++...+..+.....++....+++.|+.+.++.. ....+...+...++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333334444455555566788887766532 34456666677777888899999999998 99999988887777
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006710 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (634)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (634)
++..++++. .+.+.+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 665554432 344556666677788777777778899999999998 9
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006710 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (634)
Q Consensus 228 ~~~~~~-~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 278 (634)
+++.++ ++.+..+|..++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 999998 577888999999999999988888888888877766666555443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.14 E-value=1.3e-10 Score=126.69 Aligned_cols=185 Identities=12% Similarity=0.006 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-----HHHHH
Q 006710 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI 145 (634)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~-----~~~~~ 145 (634)
.+...+..++....++....+++.|+.+.++.+..+.++..+...++..++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455555555666666677788999988888877888888888899999999999999998 9986554 56666
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006710 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (634)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (634)
..++.+++.+........+ ..+.+.+++..++.|++.+...+...++..|.+|++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----- 419 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSG-------------------KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----- 419 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCT-------------------TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHHHHHhcCCCC-------------------CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence 5555555544311000000 0245667777889999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 006710 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (634)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~ 282 (634)
|+++.++++...++|..++|.+.+++.+ .++.+.|++.++..++..++.+...++
T Consensus 420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 -NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp -SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988865 456667777666666655555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.05 E-value=1.7e-08 Score=109.68 Aligned_cols=184 Identities=9% Similarity=-0.031 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006710 71 ALFIFGNEMAER-MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (634)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~ 149 (634)
........++.. .+.+.+. +...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 333333333333 3344443 445566677888888888777888888899999999999998 9999999998888877
Q ss_pred HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006710 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (634)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~ 229 (634)
.+.+...... .. .....+....+..+....+..+....+.+|++|++. |++
T Consensus 356 ~~~l~~~~~~---~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~ 406 (491)
T 4gc0_A 356 MFSLGTAFYT---QA--------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGK 406 (491)
T ss_dssp HHHHHHHHHT---TC--------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHH
T ss_pred HHHHHHHHhc---cc--------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHH
Confidence 7666554220 00 122222222222222223345777889999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 006710 230 FFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (634)
Q Consensus 230 ~~~~~~~~~~lg~~~~p~i~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~ 285 (634)
++++.+....+|+.+++.+...+.+ ..++.+.|++.+++.+++.+..++..|+.+.
T Consensus 407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 407 ALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 9999988888988888877665533 3455667777777777776666666665543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.86 E-value=1.3e-09 Score=114.04 Aligned_cols=164 Identities=12% Similarity=-0.095 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-HH
Q 006710 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (634)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~-~~ 147 (634)
+.++...+..++...+.+.+..+++.|+++.+|.+..+++...+...++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3466677777788888888888999999998999999999999999999999999999999998 872 2333322 22
Q ss_pred HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006710 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (634)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (634)
.+......... + ..+.+.+++..++.|++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0355666777788999999999999999999998 66 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 006710 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (634)
Q Consensus 228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~ 266 (634)
++..++++...++|..++|.+.+++.+..++...+++..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988777877776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.44 E-value=1.1e-06 Score=96.03 Aligned_cols=137 Identities=12% Similarity=0.006 Sum_probs=101.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhh-hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCC
Q 006710 418 TCMPVFPGLSIFLILSLYYSTFVPL-CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA 496 (634)
Q Consensus 418 ~~~~~~~~~~~~l~~~~~~~~~~~l-~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (634)
+.+.....+..++..++.+++.||+ +||. .+.++.++.+++.++..+..
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~~------------------- 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----------TILWLSLIYCVGHAFLAIFE------------------- 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----------HHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHhc-------------------
Confidence 3445556667778888999999998 7773 36677777777766554321
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH---HHHHhHHHHHHHHHHHHHhhcccCCCCCCCC
Q 006710 497 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQP 573 (634)
Q Consensus 497 ~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~ 573 (634)
.+.+.+++..++.|++.+...+...+++.+.+|++.|+.+.++ .+...++|..+++.+.+.+.+..
T Consensus 107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 1456677778889999999999999999999999999877666 88888999999998888765522
Q ss_pred CccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 006710 574 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLY 605 (634)
Q Consensus 574 ~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~ 605 (634)
+| ...|++.+++.++..+..++
T Consensus 176 g~----------~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GA----------AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CH----------HHHHHHHHHHHHHHHHHHHS
T ss_pred cH----------HHHHHHHHHHHHHHHHHHHH
Confidence 24 55677777666665555443
Done!