BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006711
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 180/602 (29%), Positives = 295/602 (49%), Gaps = 82/602 (13%)
Query: 38 SEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERA 97
++ +++ D F+ PSE +L ++ LG Y F + ++ + P ++
Sbjct: 20 NKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTG--HVQQQDHHPSQQG 77
Query: 98 AELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFV 157
+ +Y RA G+ +L YR A+L +EQ+ L + ++ V L++F +
Sbjct: 78 ------QGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQL 131
Query: 158 LFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWM 217
LFP + +V +I+ I G Q+L ++K G+P +++ ++++L H VMY QL++WM
Sbjct: 132 LFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWM 191
Query: 218 VYGILQDQHGEFFIRR---------QEDRDTEHCSSHSDVSEKL-----ARLSTDYTSVT 263
++G+L DQH EFFI++ Q + D E ++L RL + +
Sbjct: 192 LHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLA 251
Query: 264 DWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQKIQGVT 323
F + +++LP YI +R+AE ILF G++V++ N Q+ +TR
Sbjct: 252 PSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFEN-------QNVNLTRKG------- 297
Query: 324 GRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAAS 383
SI K + D A L LK+ F FE VD IR+ A
Sbjct: 298 ---SILK----------------NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAE 338
Query: 384 HLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQ 443
HLW+L+V ++L G LK +KD++LL +G+ FQ F++ ++ +++ PP T E D+ V FQ
Sbjct: 339 HLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVT-EHDVNVAFQ 397
Query: 444 LAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLD 503
+A K + ++D + L + G H D +A+ G + + +
Sbjct: 398 QSAHKVLLDDDNLLPLLHLTIEYHG----KEHKDATQAR------EGPSRETSPREAPAS 447
Query: 504 GWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDHTYFA 563
GW + L Y V WPL + FT VL KY VF+YLL ++R Q EL+ WA M + H
Sbjct: 448 GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL--- 504
Query: 564 KHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESH 623
+ QT WR+R HMAFL+ NLQ+Y+QVDV+E+Q++ L I +
Sbjct: 505 -------------KSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTR 551
Query: 624 DF 625
DF
Sbjct: 552 DF 553
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 408 LEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSF 467
L+K D +C E+ ++ P + ADL + LA ++ I E DKY R + + F
Sbjct: 98 LDKVDLIKCE-EKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDF 156
Query: 468 GITVK 472
+T K
Sbjct: 157 KLTTK 161
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 442 FQLAAIKTISEEDKYFSRVSLRMPSFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDIS 501
+ LAA+ E K S L PSF I VK+ A ++G+ + + ++
Sbjct: 167 YLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN---------AISNGSVKEEIDAVK-NVP 216
Query: 502 LDGWDGIALEYSVDWP----LQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQ 557
+ D I E + W LQ+ +L + F + +LE+ WA++
Sbjct: 217 VLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTS----NYSFADLERKWATIKGS 272
Query: 558 DHTYFAKHRNDRINY 572
D T+ AK +R+ Y
Sbjct: 273 DETWQAKRVMERVRY 287
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 482 KAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQE--VLSKYCKVFQ 535
K Y SG A++ N+D S++G+ + + ++D L LF + + +L KY F+
Sbjct: 185 KVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFK 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,632,084
Number of Sequences: 62578
Number of extensions: 687435
Number of successful extensions: 1255
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 5
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)