Query 006711
Match_columns 634
No_of_seqs 180 out of 847
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 13:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2065 Gamma-tubulin ring com 100.0 5.1E-83 1.1E-87 630.4 40.3 568 1-634 1-576 (679)
2 KOG2001 Gamma-tubulin complex, 100.0 1.1E-74 2.4E-79 597.8 39.0 519 1-633 97-619 (734)
3 PF04130 Spc97_Spc98: Spc97 / 100.0 1.5E-67 3.3E-72 588.5 45.7 523 4-634 1-532 (542)
4 KOG2000 Gamma-tubulin complex, 100.0 2.4E-52 5.2E-57 457.3 32.6 499 1-633 207-720 (879)
5 KOG4344 Uncharacterized conser 99.9 3.6E-26 7.8E-31 234.4 24.1 574 51-634 330-1010(1121)
6 PF14609 GCP5-Mod21: gamma-Tub 81.5 6.1 0.00013 41.8 8.0 59 1-78 185-244 (653)
7 KOG4344 Uncharacterized conser 42.7 4.8 0.0001 43.8 -1.7 125 112-236 453-582 (1121)
8 PF14689 SPOB_a: Sensor_kinase 26.5 1.6E+02 0.0034 22.1 4.7 35 391-425 19-53 (62)
9 KOG2000 Gamma-tubulin complex, 22.5 2.4E+02 0.0053 33.2 7.3 96 501-616 588-684 (879)
10 PF14966 DNA_repr_REX1B: DNA r 19.1 5.4E+02 0.012 21.3 10.2 45 110-154 36-81 (97)
No 1
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-83 Score=630.37 Aligned_cols=568 Identities=39% Similarity=0.635 Sum_probs=464.4
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006711 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDIS-FIEPSERDLLEKIITLGFYYREIDRFASK 79 (634)
Q Consensus 1 mv~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~-~l~~s~~~ll~~i~~~g~~~~~l~~fv~~ 79 (634)
||||+|+||.|++|+.|.+.... + +...+.++| +++||||+++++++.+|.+|+.+.+|.+-
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~---~--------------GLa~~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtsw 63 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARF---N--------------GLAETTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSW 63 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhc---c--------------ccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997621 1 223345555 89999999999999999999999999855
Q ss_pred hhccccccccCCCchhhHhhhhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhHhhhhhh
Q 006711 80 ARNLSWIRSANASPLERAAELSK-SKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVL 158 (634)
Q Consensus 80 ~~~~~~i~s~~~~~~~~~~~~~~-~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~sL~~l~~~l~~~~~~ 158 (634)
+ ++.-.+|+.+++++++ .....+|.|.+|||.||.+.|++|+..|..||+.++.++.++|+++...|..++..
T Consensus 64 I------rsvTsH~~~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~L 137 (679)
T KOG2065|consen 64 I------RSVTSHSSGRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPL 137 (679)
T ss_pred H------HHhccCcccccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhh
Confidence 3 3332345444444332 33456899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCC
Q 006711 159 FPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD 238 (634)
Q Consensus 159 l~~L~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~~~~~ 238 (634)
++.++++|.+|...+++||+||+.||++ +||.|+++..+.++++.|..++++++..||.+|.|.||++||||+......
T Consensus 138 fp~~~~vi~eI~~~~irGcqlL~~l~k~-HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~ 216 (679)
T KOG2065|consen 138 FPFMRNVITEIHVLNIRGCQLLHNLHKQ-HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDA 216 (679)
T ss_pred hHHHHHHHHHHHhcccchhHHHHHHHHh-ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCC
Confidence 9999999999988899999999999998 799999999999999999999999999999999999999999999988887
Q ss_pred cccCCCcccchHHhh--hhcc-CCCCccccccceeeecCCCCcccChHHHHHHHhhhhHHHHhhCCCccc--h-hhhhhh
Q 006711 239 TEHCSSHSDVSEKLA--RLST-DYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAF--R-FQDQLI 312 (634)
Q Consensus 239 ~~~~~~~~~~~~~l~--~~~~-~~~~~~~W~~~f~l~~~~lP~fl~~~~a~~Il~~GK~l~~L~~~~~~~--~-~~~~~~ 312 (634)
.+..|..++..++|. ++.. .........-.|..+....|.|.+-..+.+.|++|+...+.+.....- . ..++.+
T Consensus 217 ~d~ss~~ee~~e~L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~ 296 (679)
T KOG2065|consen 217 VDGSSFSEEATESLLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLA 296 (679)
T ss_pred CCcccCchhhhhhhhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccceeeeeccCCchh
Confidence 777777777666653 1110 001111123356666677888887788899999999888877532110 0 001111
Q ss_pred hhcccccccccccccccccchhhhhhhcccCCCcccHHHHHHHHhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 006711 313 TRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVR 392 (634)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~ 392 (634)
.+|..++.++.+.++++ ..+++++.++.+|++.+.|+...|+..|+.++..++.+||++++++
T Consensus 297 ----------------~~e~eld~dlt~G~ll~-~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e 359 (679)
T KOG2065|consen 297 ----------------AKEAELDSDLTYGQLLS-GREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNE 359 (679)
T ss_pred ----------------hHHhhccccchhhhhcC-CChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11222334444556888 4459999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHHhhhcccccccCCceeEEecCCCcccC
Q 006711 393 ANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVK 472 (634)
Q Consensus 393 ~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~~s~~~~d~~~~~l~~~~~~~~~~~~ 472 (634)
.+|.+||++||+|||||+|||++.|++.+...|+.|++..+ +++++..|+.|...+..++|++++++++.+...+-++.
T Consensus 360 ~DL~gqlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~t-E~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~ 438 (679)
T KOG2065|consen 360 VDLEGQLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERT-EKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEP 438 (679)
T ss_pred HhHHhHHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhc-ccccchhhhhhhhhccccccccccceEEEecccCCCCc
Confidence 99999999999999999999999999999999999999888 89999999999999999999999999999987652221
Q ss_pred CCccchhhhhcccCCCCCCccCCCCCCCCccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 006711 473 SPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWA 552 (634)
Q Consensus 473 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~ 552 (634)
.|..+. .+ |-+ ......+..|||++.|.|+|+|||+++|||.++++||.||+||+++||+++.|+++|.
T Consensus 439 ---aD~~~~---~t---Gka--~ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA 507 (679)
T KOG2065|consen 439 ---ADTSDF---NT---GKA--FLTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWA 507 (679)
T ss_pred ---cchhhh---cc---Ccc--cccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11 211 2223567899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhhcccccccccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCHHHHHhhh
Q 006711 553 SVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFH 632 (634)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~ldei~~~H 632 (634)
.+|.+++..- .++..+ +.++ |.+|+.|.+|+++||+|+++||||++|..++..++...||++|..+|
T Consensus 508 ~qm~r~h~~s-----~q~~d~------~~I~--WRlRnhmaFl~~NlQyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH 574 (679)
T KOG2065|consen 508 KQMWRAHSAS-----DQPPDN------KIIT--WRLRNHMAFLLNNLQYYIQVDVLESQFGILMNVIKSRSDFEVIQRAH 574 (679)
T ss_pred HHHHHHHhhc-----cCCCCC------ccch--HHHHHHHHHHHhhhheeeeehhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9998876511 110000 1222 99999999999999999999999999999999999999999999999
Q ss_pred cC
Q 006711 633 QE 634 (634)
Q Consensus 633 ~~ 634 (634)
++
T Consensus 575 ~~ 576 (679)
T KOG2065|consen 575 TV 576 (679)
T ss_pred HH
Confidence 74
No 2
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=1.1e-74 Score=597.80 Aligned_cols=519 Identities=23% Similarity=0.393 Sum_probs=428.2
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006711 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA 80 (634)
Q Consensus 1 mv~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~ 80 (634)
+++|+|+||.|++|.++.++....+.+. .-......|.|.|+ ++-+.|.++++++++|.+|..++.|++..
T Consensus 97 li~dLl~af~Gv~~ryV~~Q~~~~s~~~------~~~~~~~~F~v~~~---fd~~ir~la~eilpl~~yy~~v~~fie~~ 167 (734)
T KOG2001|consen 97 LIDDLLYAFVGVEGRYVSPQYMIISEAY------EKWIDSIFFMVLPR---FDLAIRELAEEILPLASYYLLVQDFIEET 167 (734)
T ss_pred HHHHHHHHHcCCCcceeecchhhhhhhh------hhhccCcceeeccc---hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999764322110 00113678888887 56799999999999999999999999983
Q ss_pred hccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhHhhhhhhhh
Q 006711 81 RNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFP 160 (634)
Q Consensus 81 ~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~sL~~l~~~l~~~~~~l~ 160 (634)
. ....|.+.+|+|+|++++|.+|+..|.++|.+...+ .+|++++...++|+...++
T Consensus 168 s-----------------------~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~~-~lslq~L~~y~qP~m~~m~ 223 (734)
T KOG2001|consen 168 S-----------------------FFEYGQVNHALAAALRELLYDYYELISQLEQELRTN-RLSLQDLWFYMQPMMRSMR 223 (734)
T ss_pred c-----------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHhhhHHHHH
Confidence 1 114799999999999999999999999999999776 6899999999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHhhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCC
Q 006711 161 PLYELVLEIERDDIRGGQLLNLLHKRC--HCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRD 238 (634)
Q Consensus 161 ~L~~iv~~i~~~~~~g~~LL~~L~~~~--~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~~~~~ 238 (634)
.|+..+..+..+..+||.+|+.|++.+ ..||+..+.++.++++.+.+||+.|+..|+..|.+.|||+||||..+....
T Consensus 224 ~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k 303 (734)
T KOG2001|consen 224 RLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDNLITK 303 (734)
T ss_pred HHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhcchhh
Confidence 887777766667889999999999998 689999999999999999999999999999999999999999999983322
Q ss_pred cccCCCcccchHHhhhhccCCCCccccccceeeecCCCCcccChHHHHHHHhhhhHHHHhhCCCccchhhhhhhhhcccc
Q 006711 239 TEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITRSSQK 318 (634)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~f~l~~~~lP~fl~~~~a~~Il~~GK~l~~L~~~~~~~~~~~~~~~~~~~~ 318 (634)
... ..++.+++|..+|+|+++.+|.|+. +.|+|||.+||++|++|.|+....++-+
T Consensus 304 ~~l---------------~ed~~d~YW~~RY~ir~dqiP~fL~-~~adkIL~tGKYLNVvReC~~~v~~p~~-------- 359 (734)
T KOG2001|consen 304 EDL---------------PEDYTDKYWDQRYTIRKDQIPGFLL-SEADKILRTGKYLNVVRECGKIVTIPQS-------- 359 (734)
T ss_pred hcC---------------chhhhHHHHHHhheechhhcchHHH-HHHHHHHHhhhHHHHHHHhCccCCCCcc--------
Confidence 211 3567799999999999999999996 9999999999999999999865321100
Q ss_pred cccccccccccccchhhhhhhcccCCCcccHHHHHHHHhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhcHHHH
Q 006711 319 IQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRANLNGH 398 (634)
Q Consensus 319 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~~~L~~~ 398 (634)
.+++. ....++...++..|+++|..++..++++|+++++|..|
T Consensus 360 ------------------------------~n~~~-------~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~h 402 (734)
T KOG2001|consen 360 ------------------------------SNEIN-------DPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGH 402 (734)
T ss_pred ------------------------------hhhhc-------cccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 00000 01123346789999999999999999999999999999
Q ss_pred HHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHHh-hhcccccccCCceeEEecCCCcccCCCccc
Q 006711 399 LKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAI-KTISEEDKYFSRVSLRMPSFGITVKSPHVD 477 (634)
Q Consensus 399 L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~-~s~~~~d~~~~~l~~~~~~~~~~~~~~~~~ 477 (634)
|+.||+||||.+|||+.+|++.++++|.++.+.++ +.+|+++|+.|++ .+.+.+||+.+.+.+.+....+..+
T Consensus 403 LrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~-p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~q----- 476 (734)
T KOG2001|consen 403 LRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENIS-PEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQ----- 476 (734)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcC-HHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHH-----
Confidence 99999999999999999999999999999998888 8899999999999 5667789999999999865332100
Q ss_pred hhhhhcccCCCCCCc-cCCCCCCCCccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 006711 478 LLKAKAYADGTSGAA-LSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMH 556 (634)
Q Consensus 478 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~ 556 (634)
.....++.+...+++ .+...-.....|++.+.|+|+||||||+||++++|.+||.|||++|.+|++++.|+.+|..+..
T Consensus 477 l~~~l~ie~~e~~ans~~dP~~~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~ 556 (734)
T KOG2001|consen 477 LSHILAIEPEEESANSQADPLEHLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSK 556 (734)
T ss_pred HHHHHhcCccccccccccCcchhccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000001111111111 1111112578899999999999999999999999999999999999999999999999998643
Q ss_pred hhchhhhcccccccccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCHHHHHhhhc
Q 006711 557 QDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQ 633 (634)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~ldei~~~H~ 633 (634)
.+.. + ...+++.|..+.||++|++||.+|.+|++.+||||+|..|...+++++++|+++.-|+
T Consensus 557 ~r~~------~--------~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he 619 (734)
T KOG2001|consen 557 ARSS------N--------TKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHE 619 (734)
T ss_pred hhcc------c--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHH
Confidence 2110 1 1223678999999999999999999999999999999999999999999999999996
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=1.5e-67 Score=588.54 Aligned_cols=523 Identities=29% Similarity=0.481 Sum_probs=350.6
Q ss_pred HHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006711 4 ELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDI--SFIEPSERDLLEKIITLGFYYREIDRFASKAR 81 (634)
Q Consensus 4 dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~--~~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~~ 81 (634)
|+|+||+|++|.+|.+++. ..+|.+.+++ +.+++++++++++++++|++|++|++|++.+.
T Consensus 1 dll~~L~G~~s~~f~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~ 63 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKD-----------------SDRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVS 63 (542)
T ss_dssp HHHHHHTT---SSSEEETT------------------TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHccCCCCceEEEeCC-----------------CCeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999873 4789998886 45789999999999999999999999999742
Q ss_pred ccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhHhhhhhhhhH
Q 006711 82 NLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFPP 161 (634)
Q Consensus 82 ~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~sL~~l~~~l~~~~~~l~~ 161 (634)
.. ....|++.+||+++|+++|.+|+..|..+|+++..++.+||..+...++++..+++.
T Consensus 64 ~~---------------------~~~~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~ 122 (542)
T PF04130_consen 64 SS---------------------SSERGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRLEA 122 (542)
T ss_dssp -------------------------S-SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHHHH
T ss_pred cC---------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 10 113699999999999999999999999999999887789999999999999999999
Q ss_pred HHHHHHHH----hcCCCccchHHHHHHhhc---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEee
Q 006711 162 LYELVLEI----ERDDIRGGQLLNLLHKRC---HCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQ 234 (634)
Q Consensus 162 L~~iv~~i----~~~~~~g~~LL~~L~~~~---~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~ 234 (634)
|++++..+ .....+|++||+.||+.. .+|++..++++..|+..+++||++++..||.+|+|.||++||||+++
T Consensus 123 L~~l~~~~~~~~~~~~~~g~~lL~~L~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~ 202 (542)
T PF04130_consen 123 LADLIQEIIQLSLSQNLRGGQLLSILYERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRN 202 (542)
T ss_dssp HHHHHHHH----HHHT--THHHHHHHHHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE-
T ss_pred HHHHHHHHhhhccccCCcHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeec
Confidence 99999986 346789999999999999 78999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCcccchHHhhhhccCCCCccccccceeeecCCCCcccChHHHHHHHhhhhHHHHhhCCCccchhhhhhhhh
Q 006711 235 EDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQLITR 314 (634)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~f~l~~~~lP~fl~~~~a~~Il~~GK~l~~L~~~~~~~~~~~~~~~~ 314 (634)
.... ......+|.++|.++.+++|.|++.++|++|+.+||++++|+.++..........
T Consensus 203 ~~~~-------------------~~~~~~~w~~~f~l~~~~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~-- 261 (542)
T PF04130_consen 203 KESN-------------------SESSEDFWDDRFVLRESRVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQE-- 261 (542)
T ss_dssp ----------------------------------EEE-GGGS-TTS-HHHHHHHHHHHHHHHT------S------TT--
T ss_pred cccc-------------------CcccchhhccCEEECcccCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhcc--
Confidence 4321 1234789999999999999999988999999999999999999976521100000
Q ss_pred cccccccccccccccccchhhhhhhcccCCCcccHHHHHHHHhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006711 315 SSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVVVRAN 394 (634)
Q Consensus 315 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~~~ 394 (634)
. .. . ... . ..............+.....++..|++.+..+++.++++++++++
T Consensus 262 ----------~-------~~-~------~~~-~--~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~ 314 (542)
T PF04130_consen 262 ----------L-------SS-D------LCL-S--DKESSESSSLQPFEPLDQDKLESKIESQYKLVNKSLLDLLFEDYN 314 (542)
T ss_dssp ------------------SH-H------H-------HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ----------c-------hh-h------hhh-h--hhhhhhHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 00 0 000 0 000000011112234567889999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHHhhhcccccccCCceeEEecCCCcccCCC
Q 006711 395 LNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMPSFGITVKSP 474 (634)
Q Consensus 395 L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~~s~~~~d~~~~~l~~~~~~~~~~~~~~ 474 (634)
|.+||+++|+||||++|||+..|++.+++.+.++..... ...++..++.++........+...... . ... ....
T Consensus 315 l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~---~~~~ 388 (542)
T PF04130_consen 315 LLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSS-DSNLNSILQEALRASSADWSDESSNLR-S-GEI---SSST 388 (542)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTH-HHHHHHHHHHHHHHTT---TTSGGGEE-E-----------
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccc-hhhHHHHHHHHHHhCccccccchhhhh-h-ccc---cccc
Confidence 999999999999999999999999999999988876665 677788888888765432221111110 0 000 0000
Q ss_pred ccchhhhhcccCCCCCCccCCCCCCCCccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006711 475 HVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASV 554 (634)
Q Consensus 475 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~ 554 (634)
....+... ............+..+|+.+.|+|++||||++|||+++|.+|++||+|||++|++++.|+++|...
T Consensus 389 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~w~~~ 462 (542)
T PF04130_consen 389 SLSSNLSS------NDSSSRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSVWRQL 462 (542)
T ss_dssp -----------------------------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhh------hhhhcccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000001122345788999999999999999999999999999999999999999999999999987
Q ss_pred HhhhchhhhcccccccccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCHHHHHhhhcC
Q 006711 555 MHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE 634 (634)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~ldei~~~H~~ 634 (634)
+...+..... . ...+...++++.+|++|.||+++|++|++++||++.|.+|+++|++++|+|+|+++|++
T Consensus 463 ~~~~~~~~~~--~--------~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~ 532 (542)
T PF04130_consen 463 RRLSRKFGKP--D--------RQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDD 532 (542)
T ss_dssp TSGGG------------------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HHHhhhccch--h--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 6443210000 0 00113457789999999999999999999999999999999999999999999999973
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=2.4e-52 Score=457.28 Aligned_cols=499 Identities=23% Similarity=0.369 Sum_probs=401.3
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006711 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA 80 (634)
Q Consensus 1 mv~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~ 80 (634)
+|++++++|+|+.|.++..... ...|.+...++ +..+...++..+.++|.+|.++..|+...
T Consensus 207 lvk~v~yvl~gv~~~~~~~~~~-----------------~~~~~~k~~~~-~~~~~~~l~~~lSelg~l~~~~~~~~~~~ 268 (879)
T KOG2000|consen 207 LVKDVLYVLQGVDGALFSFDSE-----------------LECFVVKGPVH-LPRGISGLLYLLSELGVLYQRVSTFSDQL 268 (879)
T ss_pred HHHHHHHHHhhhhhceeecccH-----------------Hhhhhhhcccc-chhhHHHHHHHHHHHhHHHHhhhhhcchh
Confidence 3789999999999999999763 45666655554 55788999999999999999999999874
Q ss_pred hccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC---------CchHHHHH
Q 006711 81 RNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSE-TM---------PILATVTQ 150 (634)
Q Consensus 81 ~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~-~~---------~sL~~l~~ 150 (634)
.-.. ....|++.|||+.++++.|++|+..+..+..++..+ .. ++|..+..
T Consensus 269 ~l~~--------------------~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la 328 (879)
T KOG2000|consen 269 VLDN--------------------PYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLA 328 (879)
T ss_pred hhhh--------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHH
Confidence 2100 112599999999999999999999999887776332 11 12333333
Q ss_pred hHhhhhhhhhHHHHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcce
Q 006711 151 GLNKFFVLFPPLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFF 230 (634)
Q Consensus 151 ~l~~~~~~l~~L~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFF 230 (634)
.+-....+++.++.++..+ ...+|++++..++.+..+|++.++.+...++...+.||.+++..|+..|.+.|+|+|||
T Consensus 329 ~~~~~~~rl~i~~~l~e~~--~~~~g~~l~~~~~~f~~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFf 406 (879)
T KOG2000|consen 329 WIYEPGIRLQILCKLVEHC--QVPKGGKLLSAVHEFLTHGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFF 406 (879)
T ss_pred HHhhcchhhhHHHHHHHHh--cccCCCcchHHHHHHHHhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceE
Confidence 3333445677777777765 56789999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCcccCCCcccchHHhhhhccCCCCccccccceeeecCCCCcccChHHHHHHHhhhhHHHHhhCCCccchhhhh
Q 006711 231 IRRQEDRDTEHCSSHSDVSEKLARLSTDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAFRFQDQ 310 (634)
Q Consensus 231 I~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~f~l~~~~lP~fl~~~~a~~Il~~GK~l~~L~~~~~~~~~~~~ 310 (634)
|.+++..+. -..+..|++.|.++.+++|.||+.++|.+||.|||++++|+.||..+.|.+.
T Consensus 407 V~~~~~~~~-------------------~~~d~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e 467 (879)
T KOG2000|consen 407 VAENPDPGS-------------------VKDDRLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDE 467 (879)
T ss_pred EeccCCCCc-------------------cccccccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccc
Confidence 999987553 1237899999999999999999999999999999999999999976433211
Q ss_pred hhhhcccccccccccccccccchhhhhhhcccCCCcccHHHHHHHHhcccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 006711 311 LITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHLWQLVV 390 (634)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~l~~~l~ 390 (634)
.. ..... .. ...+++ ..-....|+..|+++|....+++.++|.
T Consensus 468 ~~---------------------~~~~~----~~--s~~~~l----------~~~~~~~l~~~v~~ay~e~inhl~~ll~ 510 (879)
T KOG2000|consen 468 ID---------------------AKASV----EE--SSTRDL----------EYASDVGLLGSVSEAYSEIVNHLNDILE 510 (879)
T ss_pred hh---------------------HHHHH----hh--hhhhhh----------ccCCChhHHHHHhhhhccchHHHHHHHH
Confidence 10 00000 00 000011 0123467899999999999999999999
Q ss_pred hhhcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHHhhh-cccc--cccCCceeEEecCC
Q 006711 391 VRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKT-ISEE--DKYFSRVSLRMPSF 467 (634)
Q Consensus 391 ~~~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~~s-~~~~--d~~~~~l~~~~~~~ 467 (634)
+.+++.+|+.++|+|.|+|+|||+..++|.+...+..|..... +++++..++.|+|++ .+.. +..+.|+.+++.+.
T Consensus 511 ~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~-~~~lt~~ldsaiR~s~na~yd~~~vL~Rld~~~~~~ 589 (879)
T KOG2000|consen 511 EVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLP-EHKLTGVLDSAVRSSLNAQYDDRDVLNRLDVRVLKL 589 (879)
T ss_pred HHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhh-HhHHHHHHHHHHhhhhccccCChhhhhhhhhHhhhc
Confidence 9999999999999999999999999999999999999887666 899999999999998 5543 33456776666431
Q ss_pred CcccCCCccchhhhhcccCCCCCCccCCCCCCCCccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHHHH
Q 006711 468 GITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMEL 547 (634)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~~L 547 (634)
..++.+||.++|+|.+..|+++++|++++.+|-+||+|||++||+++.|
T Consensus 590 -------------------------------~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~~L 638 (879)
T KOG2000|consen 590 -------------------------------SHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEFLL 638 (879)
T ss_pred -------------------------------cCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHhhhchhhhcccccccccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-H
Q 006711 548 -EKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHD-F 625 (634)
Q Consensus 548 -~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~-l 625 (634)
.+.|+..|...+. ....+.. .+ ......++++..+..+|.||+.++|+|+.++|||.+|..|..+++.+.+ +
T Consensus 639 ~~~i~k~~m~~~~~-~~~~~~~----~i-~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~l 712 (879)
T KOG2000|consen 639 ELHIWKMLMKDCNV-AKRDRLL----KI-PEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPL 712 (879)
T ss_pred HHHHHHhhhhhhcc-cccchhc----ch-HHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCch
Confidence 8899998732110 0000111 11 1223466888999999999999999999999999999999999999998 9
Q ss_pred HHHHhhhc
Q 006711 626 TELVGFHQ 633 (634)
Q Consensus 626 dei~~~H~ 633 (634)
|..+++|+
T Consensus 713 d~~~eah~ 720 (879)
T KOG2000|consen 713 DFQLEAHR 720 (879)
T ss_pred HHHHhhcc
Confidence 99999996
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3.6e-26 Score=234.35 Aligned_cols=574 Identities=18% Similarity=0.181 Sum_probs=343.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 006711 51 FIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAV 130 (634)
Q Consensus 51 ~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l 130 (634)
..+|+.+..++.+..+|...+.|..|+......+. +.-.++.-..++.-+..+-.+-+||..++-+..-.|.+.+
T Consensus 330 lahpcdnfaleqiaalghnafgLlafidekmghep-----cllleglfmfpkkascafFefdkAfmralvkdfisfkeel 404 (1121)
T KOG4344|consen 330 LAHPCDNFALEQIAALGHNAFGLLAFIDEKMGHEP-----CLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEEL 404 (1121)
T ss_pred cccchHHHHHHHHHHhhhhHHHHHhccchhccCCc-----hHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHH
Confidence 56799999999999999999999999988642210 0001111112222244566778999999999999999999
Q ss_pred HHHHHHHhcC-CCCchHHHHHhHhhhhhh--hhHHHHHHH----HH---hcCCCccchHHHHHHhhc----cCCcHHH--
Q 006711 131 LLIEQKLLSE-TMPILATVTQGLNKFFVL--FPPLYELVL----EI---ERDDIRGGQLLNLLHKRC----HCGMPEL-- 194 (634)
Q Consensus 131 ~~lE~~~~~~-~~~sL~~l~~~l~~~~~~--l~~L~~iv~----~i---~~~~~~g~~LL~~L~~~~----~~g~~~~-- 194 (634)
+++++-+.++ ..+.|..+...|.+.... +..++.+.. +. +........|++.+++.+ ..|+..-
T Consensus 405 aeIckcianndqnflLadVVdaLadmlelrhiidlHklffhGVaetppdeffavgardLlnpickaiiaYddrgeadeak 484 (1121)
T KOG4344|consen 405 AEICKCIANNDQNFLLADVVDALADMLELRHIIDLHKLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAK 484 (1121)
T ss_pred HhHHhhhhcCCceeeHHHHHHHHHHHHhhHHHHHHHHHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCccc
Confidence 9999987654 567788887777765433 444444432 11 112234568999999987 3454221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCCcccCCCcccchHHhhh--h--ccCC--CCcccccc
Q 006711 195 -QACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTEHCSSHSDVSEKLAR--L--STDY--TSVTDWHL 267 (634)
Q Consensus 195 -~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~l~~--~--~~~~--~~~~~W~~ 267 (634)
..++..|......|+++.++.|..+|.|+|...||.|++....-.++....-.....++. . +... ...+-|..
T Consensus 485 ntlilFsiefeehfpqLqlldElaedghLddGaaefiiarlknrlvkHrdfqyaphqklataekfeneekmcdiadassg 564 (1121)
T KOG4344|consen 485 NTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFIIARLKNRLVKHRDFQYAPHQKLATAEKFENEEKMCDIADASSG 564 (1121)
T ss_pred ceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHHHHHHhccccccchhhhccHHHHHHHHHhhhHHHHhhhhccccc
Confidence 234445667788999999999999999999999999998876544332210000000000 0 0000 00111211
Q ss_pred ceeee---cCCCCcccChHHHHHHHhhhhHHHHhhCC--Cccchh-----------------hhhhhhhccc-----ccc
Q 006711 268 GFHIF---LDMLPEYIHMRIAESILFAGKAVRVLRNP--SSAFRF-----------------QDQLITRSSQ-----KIQ 320 (634)
Q Consensus 268 ~f~l~---~~~lP~fl~~~~a~~Il~~GK~l~~L~~~--~~~~~~-----------------~~~~~~~~~~-----~~~ 320 (634)
+-..- .+-+-.|.. +.-..|.+.||..+.|.+. -.+-.| .+...++|.. ..+
T Consensus 565 raagedhlqefiVeFck-eedaniimagkrkqllgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlcspn 643 (1121)
T KOG4344|consen 565 RAAGEDHLQEFIVEFCK-EEDANIIMAGKRKQLLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLCSPN 643 (1121)
T ss_pred cccChHHHHHHHHHHHH-HHHHHHHHhhhHHHhhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccccCHH
Confidence 11100 011234664 5566688999999999853 111111 1111122210 000
Q ss_pred cccccccccccc-hhhh--h----------hhcc------cCCCcccHHHHHHHHhc--ccC---C--------CCCchh
Q 006711 321 GVTGRFSIQKEP-LLDM--K----------LIGE------ELLPQSDADKIEAMLQG--LKE---P--------SEFHKR 368 (634)
Q Consensus 321 ~~~~~~~~~~e~-~~~~--~----------~~~~------~~~~~~~~~~i~~~l~~--l~~---~--------~~~~~~ 368 (634)
..+.-.+.++|. +.+. . .+.. .-.| ++..+++++.-. +.. + ..|-..
T Consensus 644 tLsEmlqankEiqLmklhdeaeshffalddVhcgadaidfadep-eedkDfedkfacgdvcvdrsqeirncelFaiflqp 722 (1121)
T KOG4344|consen 644 TLSEMLQANKEIQLMKLHDEAESHFFALDDVHCGADAIDFADEP-EEDKDFEDKFACGDVCVDRSQEIRNCELFAIFLQP 722 (1121)
T ss_pred HHHHHHhhccccchhhHHHHHHHhHHHHhhccCcccccchhhCC-CccccHHHhhccccccccccccceehhhHHHHhhh
Confidence 000000111111 0000 0 0000 0000 001111111100 000 0 012234
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHhhhcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHH
Q 006711 369 SFECAVDSIR--AIAASHLWQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAA 446 (634)
Q Consensus 369 ~l~~~I~~~~--~~~s~~l~~~l~~~~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~ 446 (634)
-++..|++.+ ...+..|+.-+.+++.+.+.|.+.+.||++.+||.+..|+-.++..++...++.+ -...+..|++|+
T Consensus 723 clephidkQrerLdccgnLManikKdlelsecLQakreffeaegedlmrdfwlaiedaIRakckeqn-VaekmrfLqeam 801 (1121)
T KOG4344|consen 723 CLEPHIDKQRERLDCCGNLMANIKKDLELSECLQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQN-VAEKMRFLQEAM 801 (1121)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHh-HHHHHHHHHHHh
Confidence 4667788884 4578999999999999999999999999999999999999999988876666554 456667788876
Q ss_pred h--hhcccccccCCceeEEecCCCcccC------CCc---cc---hhhhhcccCCCCCCccCCCCCCCCccccceeeeee
Q 006711 447 I--KTISEEDKYFSRVSLRMPSFGITVK------SPH---VD---LLKAKAYADGTSGAALSSGNSDISLDGWDGIALEY 512 (634)
Q Consensus 447 ~--~s~~~~d~~~~~l~~~~~~~~~~~~------~~~---~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~l~L~y 512 (634)
. ....- -++.+++.+++....-..+ |.+ +- .|+..-|.-.. -.++-.+.+-....++|++.|+|
T Consensus 802 glekrYlf-vedsnaLfirfEnvdnakkaLgsvltsklcavllphypqlahylhvk-lisqinsnsikvveaLdaieLdf 879 (1121)
T KOG4344|consen 802 GLEKRYLF-VEDSNALFIRFENVDNAKKALGSVLTSKLCAVLLPHYPQLAHYLHVK-LISQINSNSIKVVEALDAIELDF 879 (1121)
T ss_pred hhhhcccc-cccccceeEEeecccchhhhcchhhhhhhhhhhcccchhhhhHHHHH-HHhhhcccchhhhhhhhheeecc
Confidence 5 22211 1345788888752110000 000 00 01000000000 00001122234567899999999
Q ss_pred e--cCCccccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-hhhhccc--cccc----ccchhhhhhhccc
Q 006711 513 S--VDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASVMHQDH-TYFAKHR--NDRI----NYSKSQQRRQTCR 583 (634)
Q Consensus 513 ~--v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~~ 583 (634)
+ ++||..+|+|+.+|+.||++|+.|+++||+.|.|.++-+--..+.. .+.++.+ ..+. .+...+.++..++
T Consensus 880 erpmamhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIh 959 (1121)
T KOG4344|consen 880 ERPMAMHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIH 959 (1121)
T ss_pred cCCcccchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHH
Confidence 9 9999999999999999999999999999999999986553221110 0011110 0000 0112234556789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCHHHHHhhhcC
Q 006711 584 PMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDFTELVGFHQE 634 (634)
Q Consensus 584 ~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~ldei~~~H~~ 634 (634)
|+..+|.+++|||++|+.|+|..|+++...+|+.++++|+|+|+++.+|.|
T Consensus 960 RleilRfkLiffiNnLHahIMeailhStgleFehqieEaKdldeLiiiHde 1010 (1121)
T KOG4344|consen 960 RLEILRFKLIFFINNLHAHIMEAILHSTGLEFEHQIEEAKDLDELIIIHDE 1010 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhcCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999975
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=81.46 E-value=6.1 Score=41.77 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=46.2
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCCCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 006711 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPS-ERDLLEKIITLGFYYREIDRFAS 78 (634)
Q Consensus 1 mv~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s-~~~ll~~i~~~g~~~~~l~~fv~ 78 (634)
|++|.+++|.|++|-+|... ++.|+..|.+..++.. ++.++..++..|.-+..+++-..
T Consensus 185 ~~~e~IymL~Gy~~~~f~~v-------------------e~~l~~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva~ 244 (653)
T PF14609_consen 185 WKYEIIYMLMGYQGHIFTCV-------------------EEILRHAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVAN 244 (653)
T ss_pred hHHHHHHHHhcCcchhhhhh-------------------HhhhcccccccchHHHHHHHHHHHhhccccchHHHHHHhC
Confidence 68999999999999999654 4567666766555554 78899999999999988885433
No 7
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.74 E-value=4.8 Score=43.85 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHhHhhhhhhhhHHHHHHHHH----hcCCCccchHHHHHHhh
Q 006711 112 RRAIANGIVEILSVYRSAVLLIEQKLLSETMP-ILATVTQGLNKFFVLFPPLYELVLEI----ERDDIRGGQLLNLLHKR 186 (634)
Q Consensus 112 ~~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~-sL~~l~~~l~~~~~~l~~L~~iv~~i----~~~~~~g~~LL~~L~~~ 186 (634)
-.-|+-+++.+|+...+.|...+.....++.- ++.-+....+..+..|+.|.+++... .+.......+++.++++
T Consensus 453 deffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaefiiarlknrlvkH 532 (1121)
T KOG4344|consen 453 DEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFIIARLKNRLVKH 532 (1121)
T ss_pred chhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHHHHHHhcccccc
Confidence 35677889999999999998888776655421 22222223455566666777766532 01112334566666665
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecC
Q 006711 187 CHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQED 236 (634)
Q Consensus 187 ~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~~~ 236 (634)
..--....+.+.........+-|+..++.|.......|...||+|.....
T Consensus 533 rdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFcke 582 (1121)
T KOG4344|consen 533 RDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCKE 582 (1121)
T ss_pred chhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHHH
Confidence 53222234566677777888999999999999999999999999987644
No 8
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.54 E-value=1.6e+02 Score=22.05 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=29.3
Q ss_pred hhhcHHHHHHHhhhhhcccCCchHHHHHHHHHHhh
Q 006711 391 VRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLM 425 (634)
Q Consensus 391 ~~~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l 425 (634)
..+++..||..+..+.=+|+.|=+...+..+...+
T Consensus 19 ~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 19 QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999998888888876554
No 9
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=22.53 E-value=2.4e+02 Score=33.22 Aligned_cols=96 Identities=16% Similarity=-0.004 Sum_probs=71.9
Q ss_pred CccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-Hhhhchhhhcccccccccchhhhhh
Q 006711 501 SLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQMELEKSWASV-MHQDHTYFAKHRNDRINYSKSQQRR 579 (634)
Q Consensus 501 ~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (634)
...++|.-...|++..++.-.++.- -. ..+|..+|++.+-.|++.+.|+.. .+..+. . .+
T Consensus 588 ~~~~gd~gwdvfsl~y~v~~p~s~v--~t-~~~~~~ylrif~flwrlkR~e~~L~~~i~k~---~--m~----------- 648 (879)
T KOG2000|consen 588 KLSHGDDGWDVFSLDYAVDGPLSLV--LT-RELMLKYLRVFNFLWKLKRVEFLLELHIWKM---L--MK----------- 648 (879)
T ss_pred hccCCcccceeeeecceecccHHHH--hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h--hh-----------
Confidence 4568888999999999999999873 33 999999999999999999999987 322211 0 00
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006711 580 QTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQ 616 (634)
Q Consensus 580 ~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~ 616 (634)
.....-..|..|.|++.+...++...+.|-.|..-+
T Consensus 649 -~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq 684 (879)
T KOG2000|consen 649 -DCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQ 684 (879)
T ss_pred -hhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHh
Confidence 001133567788999999999999888887775543
No 10
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=19.05 E-value=5.4e+02 Score=21.31 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHhHhh
Q 006711 110 VYRRAIANGIVEILSVYRSAVLLIEQKLLS-ETMPILATVTQGLNK 154 (634)
Q Consensus 110 ~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~-~~~~sL~~l~~~l~~ 154 (634)
...+++|..|.......-..|..+|..+.. ...+.++.+...++.
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~ 81 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQE 81 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 556778888888888889999999999862 234456666555543
Done!