Query 006711
Match_columns 634
No_of_seqs 180 out of 847
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:56:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 3.3E-83 1.1E-87 724.5 52.3 547 1-634 1-562 (677)
2 3t98_B Nucleoporin NUP58/NUP45 64.3 31 0.0011 27.2 7.8 57 107-163 5-64 (93)
3 4e17_B Catenin alpha-1; four h 24.2 64 0.0022 20.9 2.8 17 112-128 21-37 (40)
4 3d19_A Conserved metalloprotei 21.0 5.5E+02 0.019 24.5 11.7 97 51-166 165-267 (283)
5 4e18_B Catenin alpha-1; four h 13.3 1.4E+02 0.0049 21.1 2.8 17 112-128 40-56 (59)
6 4hti_A Receptor-type tyrosine- 10.7 3.9E+02 0.013 21.1 4.9 55 3-80 30-84 (99)
7 1wgn_A UBAP1, ubiquitin associ 10.6 2E+02 0.0068 20.6 2.8 30 51-80 14-43 (63)
8 3ldz_A STAM-1, signal transduc 8.9 5.7E+02 0.019 21.3 5.8 45 162-206 26-70 (140)
9 3he5_B Synzip2; heterodimeric 8.4 4.4E+02 0.015 17.0 3.5 24 116-139 26-49 (52)
10 2rpa_A Katanin P60 ATPase-cont 8.2 2.4E+02 0.0082 21.3 2.7 35 393-427 10-44 (78)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-83 Score=724.49 Aligned_cols=547 Identities=33% Similarity=0.632 Sum_probs=430.9
Q ss_pred ChHHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006711 1 MLHELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA 80 (634)
Q Consensus 1 mv~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~ 80 (634)
||||||+||+|++|++|++.+ .++|+|++++++++|++++++++|+++|++|++|++|++..
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~------------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~ 62 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK------------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQY 62 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET------------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCCCCceEecC------------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999964 45799999998899999999999999999999999999974
Q ss_pred hccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhHhhhhhhhh
Q 006711 81 RNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVLFP 160 (634)
Q Consensus 81 ~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~sL~~l~~~l~~~~~~l~ 160 (634)
.. ++.+.+.+|. +.+.....|+|.+|||++|+++|.+|+..|+++|++++.++.+||+.+...++++..+|+
T Consensus 63 ~~--~~~~~~~~~~------~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~ 134 (677)
T 3rip_A 63 TG--HVQQQDHHPS------QQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFP 134 (677)
T ss_dssp SC--C-------------------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHH
T ss_pred cc--cccCcccccc------cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 21 1111111110 000122369999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCcceEEeecCCCcc
Q 006711 161 PLYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQDQHGEFFIRRQEDRDTE 240 (634)
Q Consensus 161 ~L~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~Dp~~EFFI~~~~~~~~~ 240 (634)
.|++|+.++.....+||+||+.||+++.+|+|.+++++.+|+.+|++||++||..||.+|+|.|||+||||++++..+..
T Consensus 135 ~L~~l~~~~~~~~~~G~~lL~~L~~~~~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~ 214 (677)
T 3rip_A 135 SVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNV 214 (677)
T ss_dssp HHHHHHHHHHHHTCCTHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEeccccccc
Confidence 99999998876778999999999999999999999999999999999999999999999999999999999998654321
Q ss_pred cCCCcccchHHhh----------hh-----ccCCCCccccccceeeecCCCCcccChHHHHHHHhhhhHHHHhhCCCccc
Q 006711 241 HCSSHSDVSEKLA----------RL-----STDYTSVTDWHLGFHIFLDMLPEYIHMRIAESILFAGKAVRVLRNPSSAF 305 (634)
Q Consensus 241 ~~~~~~~~~~~l~----------~~-----~~~~~~~~~W~~~f~l~~~~lP~fl~~~~a~~Il~~GK~l~~L~~~~~~~ 305 (634)
...+.+.++++. ++ ..++....+|.++|.++.+++|+||++++|+|||.|||++++||.++...
T Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~ 293 (677)
T 3rip_A 215 -SAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNL 293 (677)
T ss_dssp ---------------------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSC
T ss_pred -cccccccccccccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCC
Confidence 001111111110 00 00111234799999999999999999889999999999999999965431
Q ss_pred hhhhhhhhhcccccccccccccccccchhhhhhhcccCCCcccHHHHHHHHhcccCCCCCchhhHHHHHHHHHHHHHHHH
Q 006711 306 RFQDQLITRSSQKIQGVTGRFSIQKEPLLDMKLIGEELLPQSDADKIEAMLQGLKEPSEFHKRSFECAVDSIRAIAASHL 385 (634)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~l~~~I~~~~~~~s~~l 385 (634)
...+ ..++ ....++.+.+.+++..++++...|+.+|+++|..+|+.|
T Consensus 294 ------~~~~--------------------------~~~~-~~~~~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~L 340 (677)
T 3rip_A 294 ------TRKG--------------------------SILK-NQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHL 340 (677)
T ss_dssp ------C-----------------------------CTTC-SHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------Cccc--------------------------cccc-chHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 0000 1222 223456666777777778888899999999999999999
Q ss_pred HHHHHhhhcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcCCCCCCcchhccchHHHHHHhhhcccccccCCceeEEec
Q 006711 386 WQLVVVRANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRLPPRQSTAEADLMVPFQLAAIKTISEEDKYFSRVSLRMP 465 (634)
Q Consensus 386 ~~~l~~~~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~~l~~~l~~a~~~s~~~~d~~~~~l~~~~~ 465 (634)
+++|+++++|.+||++||+||||++|||+..|++.++++|++|+.+.+ +++|+.+|+.|++.+..+++++.+++.+.+.
T Consensus 341 l~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~-~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~ 419 (677)
T 3rip_A 341 WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVT-EHDVNVAFQQSAHKVLLDDDNLLPLLHLTIE 419 (677)
T ss_dssp HHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTH-HHHHHHHHHHHHHHTTCCCTTTGGGEEEEEC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCcccC-HHHHHHHHHHHHHHccCCchhhHhcceEEee
Confidence 999999999999999999999999999999999999999999988877 8999999999999887777778899999886
Q ss_pred CCCcccCCCccchhhhhcccCCCCCCccCCCCCCCCccccceeeeeeecCCccccccCHHHHHHHHHHHHHHHHhhHHHH
Q 006711 466 SFGITVKSPHVDLLKAKAYADGTSGAALSSGNSDISLDGWDGIALEYSVDWPLQLFFTQEVLSKYCKVFQYLLRLKRTQM 545 (634)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~~~~Y~~IFr~Ll~lk~~~~ 545 (634)
..+.... +.+.. . .+.+........+..+||.|.|+|+|||||++|||+++|.+|++||+|||++||+++
T Consensus 420 ~~~~~~~----~~~~~---~---~~~~~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~ 489 (677)
T 3rip_A 420 YHGKEHK----DATQA---R---EGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQA 489 (677)
T ss_dssp CCC---------------------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc----ccccc---c---cccccccccccCCccchheEEEEEeCCChHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432110 00000 0 000001112235678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhchhhhcccccccccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCH
Q 006711 546 ELEKSWASVMHQDHTYFAKHRNDRINYSKSQQRRQTCRPMWRVREHMAFLIRNLQFYIQVDVIETQWNILQAHIQESHDF 625 (634)
Q Consensus 546 ~L~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~L~~Y~~~~VIe~~~~~l~~~l~~a~~l 625 (634)
.|+++|+.++..++. .+ .. ...++ +.+|++|+|||++|++|++++||+++|.+|++++++++|+
T Consensus 490 ~L~~~w~~~~~~~~~------~~----~~-----~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~ 553 (677)
T 3rip_A 490 ELQHCWALQMQRKHL------KS----NQ-----TDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDF 553 (677)
T ss_dssp HHHHHHHHHTSGGGC------CS----SH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHhcccc------CC----Cc-----hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCH
Confidence 999999987543321 11 00 11123 8999999999999999999999999999999999999999
Q ss_pred HHHHhhhcC
Q 006711 626 TELVGFHQE 634 (634)
Q Consensus 626 dei~~~H~~ 634 (634)
|+|+.+|++
T Consensus 554 d~l~~~H~~ 562 (677)
T 3rip_A 554 ESIRLAHDH 562 (677)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999973
No 2
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=64.26 E-value=31 Score=27.23 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHHhHhhhhhhhhHHH
Q 006711 107 RPSVYRRAIANGIVEILSVYRSAVLLIEQKLLSE---TMPILATVTQGLNKFFVLFPPLY 163 (634)
Q Consensus 107 ~~g~~~~A~~~~l~~~L~~y~~~l~~lE~~~~~~---~~~sL~~l~~~l~~~~~~l~~L~ 163 (634)
.+..|.+-++.-.++.|..|+..|..+|+.+... ...|...|...|+.....+-.|+
T Consensus 5 ~P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLA 64 (93)
T 3t98_B 5 APADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALA 64 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999998542 24566666666665544444443
No 3
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=24.20 E-value=64 Score=20.85 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006711 112 RRAIANGIVEILSVYRS 128 (634)
Q Consensus 112 ~~A~~~~l~~~L~~y~~ 128 (634)
++|+-++|+.+|.+|..
T Consensus 21 CnavrqALQdLlseY~~ 37 (40)
T 4e17_B 21 CNAVRQALQDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56777888888888864
No 4
>3d19_A Conserved metalloprotein; structural genomics, unknown function, PSI-2, protein struct initiative, nysgxrc; 2.30A {Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Probab=21.01 E-value=5.5e+02 Score=24.54 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 006711 51 FIEPSERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAV 130 (634)
Q Consensus 51 ~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l 130 (634)
.++|+|+.++++--.++..|..+-.-.....++ + .....-+.+..|..-+......|+.+.
T Consensus 165 ~LDp~Ek~lI~~A~~F~~~Fd~L~~ka~~~~~~---~----------------~~~~~~p~l~~~~~e~~~~~~~~r~Fk 225 (283)
T 3d19_A 165 LLDPSERKLVDTARNFSNDFDELMYQAIDLESM---K----------------PQSQTAPLLDQFLDQNRVSVASLRDFK 225 (283)
T ss_dssp HBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT---T----------------TTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcC---C----------------cCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999887665543332110 0 012234468899999999999999999
Q ss_pred HHHHHHHhcCCC---Cc--h-HHHHHhHhhhhhhhhHHHHHH
Q 006711 131 LLIEQKLLSETM---PI--L-ATVTQGLNKFFVLFPPLYELV 166 (634)
Q Consensus 131 ~~lE~~~~~~~~---~s--L-~~l~~~l~~~~~~l~~L~~iv 166 (634)
..+++....... ++ + -++..+...+..+|..+....
T Consensus 226 ~~~~e~~l~ckI~s~l~PllaDHm~REa~~YL~~L~~~~~~~ 267 (283)
T 3d19_A 226 KTARDLIEQCKIKSIIHPLLADHVFREADRFLEIIDMYDVHL 267 (283)
T ss_dssp HHHHHHHHTTCSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhchHhhhcCcHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888877766542 11 2 234444444555555554433
No 5
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=13.27 E-value=1.4e+02 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006711 112 RRAIANGIVEILSVYRS 128 (634)
Q Consensus 112 ~~A~~~~l~~~L~~y~~ 128 (634)
++|+-++|+++|.+|..
T Consensus 40 CnavrqALQdLlsEY~~ 56 (59)
T 4e18_B 40 CNAVRQALQDLLSEYMG 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56777778888888863
No 6
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=10.67 E-value=3.9e+02 Score=21.10 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCCCceeeccccccCCCCCCCCCCCCCCCCceeeCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006711 3 HELLLALLGYTGDLIIDEREHQNSAATPLSGDAPISEECSFKLAPDISFIEPSERDLLEKIITLGFYYREIDRFASKA 80 (634)
Q Consensus 3 ~dlL~aL~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~ 80 (634)
-+.|.-++|++..+|....--. ..-+|+|++|.+-++.+ ++.+.+.. ++..++..
T Consensus 30 ~~~la~~l~l~~~~F~~isV~g--------------~aVTFrV~~N~~n~taa--dVA~~a~~-------~K~~Le~~ 84 (99)
T 4hti_A 30 VEDVARLLQVPSSAFADVEVLG--------------PAVTFKVSANVQNVTTE--DVEKATVD-------NKDKLEET 84 (99)
T ss_dssp HHHHHHHTTCCGGGEEEEEEET--------------TEEEEEECCCTTCCCHH--HHHHHHHH-------THHHHHHH
T ss_pred HHHHHHHhCCchhheeeeeecC--------------ceEEEEeccCCCCCCHH--HHHHHHHH-------HHHHHHHh
Confidence 4678889999987777643211 26789999997655554 56555554 45555553
No 7
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=10.61 E-value=2e+02 Score=20.59 Aligned_cols=30 Identities=30% Similarity=0.620 Sum_probs=26.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006711 51 FIEPSERDLLEKIITLGFYYREIDRFASKA 80 (634)
Q Consensus 51 ~l~~s~~~ll~~i~~~g~~~~~l~~fv~~~ 80 (634)
-++|+|.+.+..|..+|..+...++-.+.+
T Consensus 14 ~ls~se~e~V~~LvsMGFs~~qA~kALKat 43 (63)
T 1wgn_A 14 MLSPSERQCVETVVNMGYSYECVLRAMKKK 43 (63)
T ss_dssp TCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhCcchHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 378999999999999999999988887774
No 8
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=8.89 E-value=5.7e+02 Score=21.34 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHH
Q 006711 162 LYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGH 206 (634)
Q Consensus 162 L~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~ 206 (634)
..+|++.|......+...+..|.+++.+++|.+.-....|+..|.
T Consensus 26 ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~v 70 (140)
T 3ldz_A 26 ILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACV 70 (140)
T ss_dssp HHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 345556554333344567777888888888876665555555543
No 9
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=8.38 E-value=4.4e+02 Score=16.97 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 006711 116 ANGIVEILSVYRSAVLLIEQKLLS 139 (634)
Q Consensus 116 ~~~l~~~L~~y~~~l~~lE~~~~~ 139 (634)
-+.+++++...+..|+.+|.++.+
T Consensus 26 eqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 26 EQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777888888888877643
No 10
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=8.17 E-value=2.4e+02 Score=21.26 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=29.2
Q ss_pred hcHHHHHHHhhhhhcccCCchHHHHHHHHHHhhcC
Q 006711 393 ANLNGHLKALKDYFLLEKGDFFQCFLEESRQLMRL 427 (634)
Q Consensus 393 ~~L~~~L~~l~~~fLl~~Gdf~~~f~~~~~~~l~~ 427 (634)
..+.++++.-|.|-|+|+-|-...|++.+-+.+.+
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999998888666543
Done!