Query 006711
Match_columns 634
No_of_seqs 180 out of 847
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 06:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006711.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006711hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i10a2 a.121.1.1 (A:79-194) P 21.4 49 0.0035 24.8 4.6 63 161-224 10-73 (116)
2 d2hyja2 a.121.1.1 (A:83-200) P 19.7 1.6E+02 0.012 21.6 7.8 48 175-223 25-72 (118)
3 d1pb6a2 a.121.1.1 (A:86-211) H 15.4 69 0.005 24.3 4.1 34 190-223 36-69 (126)
4 d1rkta2 a.121.1.1 (A:83-205) H 15.1 2.2E+02 0.016 21.2 7.8 65 155-222 3-69 (123)
5 d1dvpa1 a.118.9.2 (A:1-145) Hr 11.1 2.3E+02 0.016 21.9 6.3 46 162-207 26-71 (145)
6 d1st6a3 a.24.9.1 (A:253-371) V 10.5 3.2E+02 0.023 20.5 7.5 26 106-131 91-116 (119)
7 d1st6a4 a.24.9.1 (A:372-488) V 10.1 3.3E+02 0.024 20.3 8.4 52 56-132 57-108 (117)
8 d2bbha1 d.328.1.1 (A:13-244) M 9.2 3E+02 0.021 22.8 6.9 21 121-141 171-191 (232)
9 d2a0ba_ a.24.10.1 (A:) Aerobic 7.8 3.7E+02 0.027 19.3 10.2 92 113-218 22-115 (118)
10 d1mhqa_ a.118.9.2 (A:) ADP-rib 7.2 2.9E+02 0.021 21.2 5.3 45 163-207 23-67 (143)
No 1
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=21.42 E-value=49 Score=24.79 Aligned_cols=63 Identities=11% Similarity=-0.072 Sum_probs=46.1
Q ss_pred HHHHHHHHH-hcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceecC
Q 006711 161 PLYELVLEI-ERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQD 224 (634)
Q Consensus 161 ~L~~iv~~i-~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~D 224 (634)
.|...+... .+...+||-+.+...+.. ..++.++..+...+......+...|..-...|+|.+
T Consensus 10 ~l~~~i~~~~~~~~p~GCl~~~~~~E~~-~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 10 FLTGRVEVFTAPGQPFGCMTVQAGLASG-EPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp HHHHHHHHHC------CCCCSSCBTTTB-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHcCCCCCCCCHHHHhHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344445443 234568998888776644 467999999999999999999999999999999864
No 2
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=19.74 E-value=1.6e+02 Score=21.57 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=39.1
Q ss_pred ccchHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 006711 175 RGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQVMYNQLASWMVYGILQ 223 (634)
Q Consensus 175 ~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~ 223 (634)
.||-+.+..-+. ...++.+++.+...+.....-+.+.|..-...|++.
T Consensus 25 ~GC~~~~~~~E~-~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 25 GGCLLTAALSEY-DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TSCHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCChhHhHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 467776666554 456778999999999999999999999999999873
No 3
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=15.36 E-value=69 Score=24.34 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcceec
Q 006711 190 GMPELQACIQRLLWHGHQVMYNQLASWMVYGILQ 223 (634)
Q Consensus 190 g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L~ 223 (634)
|.+.....+...+........+.|..|+..|.+.
T Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 36 GAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 3344455566666777777888999999999874
No 4
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=15.11 E-value=2.2e+02 Score=21.20 Aligned_cols=65 Identities=11% Similarity=-0.040 Sum_probs=42.7
Q ss_pred hhhhhhHHHHHHHHHhcCCCccchHHHHHHhhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccee
Q 006711 155 FFVLFPPLYELVLEIERDDIRGGQLLNLLHKRC--HCGMPELQACIQRLLWHGHQVMYNQLASWMVYGIL 222 (634)
Q Consensus 155 ~~~~l~~L~~iv~~i~~~~~~g~~LL~~L~~~~--~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~~G~L 222 (634)
|..++..+..++..+...+ -.+--..++.. ..-||.++..+...+......+...|...+..|.+
T Consensus 3 w~~~~~~~d~~~~~l~~~~---~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~ 69 (123)
T d1rkta2 3 WASISSYLDELTEGLRDVA---DTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEF 69 (123)
T ss_dssp HHHHHHHHHHHHHHTTTGG---GSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4445555666666553222 22233333444 23589999999999999888888888888888876
No 5
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.10 E-value=2.3e+02 Score=21.91 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q 006711 162 LYELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQ 207 (634)
Q Consensus 162 L~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~ 207 (634)
+.+|++.|......+...+..|.+++.+++|.+.-....|+..|..
T Consensus 26 il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vk 71 (145)
T d1dvpa1 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVK 71 (145)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455555533333445678888999999999877776666665543
No 6
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.55 E-value=3.2e+02 Score=20.47 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 006711 106 ERPSVYRRAIANGIVEILSVYRSAVL 131 (634)
Q Consensus 106 ~~~g~~~~A~~~~l~~~L~~y~~~l~ 131 (634)
...+|-.++++..|.+-|.+....|.
T Consensus 91 ~G~sPeA~~lA~qi~~kL~~L~~~v~ 116 (119)
T d1st6a3 91 QGATPMAMQKAQQVSQGLDLLTAKVE 116 (119)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999988777664
No 7
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.06 E-value=3.3e+02 Score=20.32 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCchhhHhhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 006711 56 ERDLLEKIITLGFYYREIDRFASKARNLSWIRSANASPLERAAELSKSKTERPSVYRRAIANGIVEILSVYRSAVLL 132 (634)
Q Consensus 56 ~~~ll~~i~~~g~~~~~l~~fv~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~l~~~L~~y~~~l~~ 132 (634)
-.+|+..+-++..+-..|-++... -...+|-.++++..|.+-|.+....|..
T Consensus 57 r~~il~lc~ei~~lt~qLadLr~~-------------------------GkG~sPeA~~lA~qi~~kL~~L~~~v~~ 108 (117)
T d1st6a4 57 RDDILRSLGEISALTAKLSDLRRH-------------------------GKGDSPEARALAKQIATSLQNLQSKTNR 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------------------SCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------------------------cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665554 2346888999999999999887777653
No 8
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.16 E-value=3e+02 Score=22.76 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 006711 121 EILSVYRSAVLLIEQKLLSET 141 (634)
Q Consensus 121 ~~L~~y~~~l~~lE~~~~~~~ 141 (634)
..+..+...+..+|..+..++
T Consensus 171 ~~l~~l~~~id~lE~~v~~~~ 191 (232)
T d2bbha1 171 VLLEKIDDEIDVLEEEVLERP 191 (232)
T ss_dssp HHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 345566666666666665443
No 9
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=7.82 E-value=3.7e+02 Score=19.26 Aligned_cols=92 Identities=11% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHhHhhhhhh--hhHHHHHHHHHhcCCCccchHHHHHHhhccCC
Q 006711 113 RAIANGIVEILSVYRSAVLLIEQKLLSETMPILATVTQGLNKFFVL--FPPLYELVLEIERDDIRGGQLLNLLHKRCHCG 190 (634)
Q Consensus 113 ~A~~~~l~~~L~~y~~~l~~lE~~~~~~~~~sL~~l~~~l~~~~~~--l~~L~~iv~~i~~~~~~g~~LL~~L~~~~~~g 190 (634)
..+..-+..++++....+..++.-+..+..-.+....|.|...... +..|+.++..++ .....|
T Consensus 22 ~~~~~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH~LKgsa~~~G~~~l~~~~~~lE--------------~~~~~~ 87 (118)
T d2a0ba_ 22 KLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQ--------------SPDLPA 87 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT--------------CTTSTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH--------------HHHHcC
Confidence 3556667777777777777777776554322344444444432221 233444444442 222334
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006711 191 MPELQACIQRLLWHGHQVMYNQLASWMV 218 (634)
Q Consensus 191 ~~~~~~~l~~Ll~~~~~p~~~~l~~Wl~ 218 (634)
+...-..+..-+.......++.|..|+.
T Consensus 88 ~~~~~~~~l~~l~~~~~~~~~~L~~~l~ 115 (118)
T d2a0ba_ 88 WEDNVGEWIEEMKEEWRHDVEVLKAWVA 115 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332222233345566666777888875
No 10
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.20 E-value=2.9e+02 Score=21.21 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCccchHHHHHHhhccCCcHHHHHHHHHHHHHHHH
Q 006711 163 YELVLEIERDDIRGGQLLNLLHKRCHCGMPELQACIQRLLWHGHQ 207 (634)
Q Consensus 163 ~~iv~~i~~~~~~g~~LL~~L~~~~~~g~~~~~~~l~~Ll~~~~~ 207 (634)
.+|++.|......+...+..|.+++.+|+|.+.-....|+..|..
T Consensus 23 l~icD~I~~~~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vk 67 (143)
T d1mhqa_ 23 QNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMN 67 (143)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344554432322344578888888999998877666666655543
Done!