Citrus Sinensis ID: 006712

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630----
Protein Sequence
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccccHHHHccHHHHccccccccccccccccccccccEEccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHcccccccccccEEEEcccHHHccccccccccccccEHHccEEEEcccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccc
Coil and Loop (DISEMBL)
mgsreikspeslqetpatssshqrkKLSVYFIESDNrrmalgrgytggttpvnvhgkpiadlsktggWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfRCLDKAALELkedvinpspwklctvTQVEEVKTLVrlvpipacTIMLNVILTEFLTLSVQQAYTMNthmgklklpvtcmpvfpgLSIFLILSLYYSTfvplcrritghprgasqLQRVGIGLAVSILSVIWAGIFERYRRNYAIshgyefsfltampdlSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSvtgnpkkgqpnwlaqnintgRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Flexible Loop (DISEMBL)
mgsreikspeslqetpatssshqrkkLSVYFIESDNRRMALGRgytggttpvnvhgkpiadlsktGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELkedvinpspwklctvtQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVtgnpkkgqpnWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRseqkhgndyevmenklydspi
Low Complexity Region (SEG)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGlsiflilslyysTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIgsayaalagglgcfaasILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered region (IsUnstruct)
***************************SVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR*********************
Disordered Region (DISOPRED)
*************************************************TPVNVHG*********GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC*************KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS*D*KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSS****************************RCLDKA***************LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY************************
Disordered Region (DISEMBL)
************************KKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Disordered Region (DISPRO)
*****************************Y*****************GTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA*KGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDSPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	634	2.2.26 [Sep-21-2011]
Q9LYR6	624	Probable peptide/nitrate	yes	no	0.965	0.980	0.814	0.0
Q9M390	570	Peptide transporter PTR1	no	no	0.862	0.959	0.418	1e-129
Q9LFB8	570	Peptide transporter PTR5	no	no	0.870	0.968	0.412	1e-123
P46032	585	Peptide transporter PTR2	no	no	0.865	0.938	0.408	1e-118
Q93Z20	590	Probable peptide/nitrate	no	no	0.861	0.925	0.402	1e-114
Q84WG0	545	Probable peptide/nitrate	no	no	0.804	0.935	0.371	1e-102
Q9SX20	596	Probable nitrite transpor	no	no	0.872	0.927	0.365	3e-99
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.903	0.984	0.361	4e-97
Q9SZY4	577	Nitrate transporter 1.4 O	no	no	0.870	0.956	0.374	1e-96
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.908	0.982	0.353	5e-96

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/614 (81%), Positives = 557/614 (90%), Gaps = 2/614 (0%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
           WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 480
           PVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YR
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480

Query: 481 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
           R+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 541 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 600
           AYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598

Query: 601 CAFLYSAYRYKYRS 614
           C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  464 bits (1193), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/566 (41%), Positives = 350/566 (61%), Gaps = 19/566 (3%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  A ++N V
Sbjct: 13  VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P   N D 
Sbjct: 72  TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K     FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  DKAA+E 
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302

Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           + D I     +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V Q  TM+ 
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362

Query: 409 HMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467
           HMGK  ++P   + +F  +S+     +Y    +PL R+ T + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422

Query: 468 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 527
            ++I AG+ E  R +Y  +H    ++      +S +W + QY LIG AEVF  +G LEF 
Sbjct: 423 FAMITAGVLEVVRLDYVKTHN---AYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFF 479

Query: 528 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 587
           Y++APDAM+S+ SA +     LG + +++L +++  +T   K G+P W+  N+N G  DY
Sbjct: 480 YDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLNRGHLDY 537

Query: 588 LYWLLAVLSVINFCAFLYSAYRYKYR 613
            ++LLA LS +NF  +L+ + RYKY+
Sbjct: 538 FFYLLATLSFLNFLVYLWISKRYKYK 563

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  441 bits (1135), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/572 (41%), Positives = 340/572 (59%), Gaps = 20/572 (3%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+     +S +V
Sbjct: 14  LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
           +N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P    C  
Sbjct: 73  SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                G    A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           PLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      DKAA+E 
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302

Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           + D       S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V Q  T++ 
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362

Query: 409 HMG-KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467
           HMG   K+P   + +F  LS+     +Y    VP  R+ TGH RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422

Query: 468 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 527
            S++ AGI E  R NY  +H     +      ++ +W + QY L+G AEVF  +G LEF 
Sbjct: 423 FSMVSAGILEVARLNYVQTHNL---YNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFF 479

Query: 528 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 587
           Y++APDAM+S+ SA +  A   G + ++ L +++  VT +   G+P W+A+N+N G  DY
Sbjct: 480 YDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLNNGHLDY 537

Query: 588 LYWLLAVLSVINFCAFLYSAYRYKYRSEQKHG 619
            +WLLA LS +NF  +L+ A  Y Y+    H 
Sbjct: 538 FFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  427 bits (1097), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/565 (40%), Positives = 338/565 (59%), Gaps = 16/565 (2%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct: 30  VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct: 89  TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
           I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN 
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query: 409 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
            +G  +LP   +  F   S+ + + LY    VPL R+ TG  +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query: 469 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY 528
            +  A I E  R + A   G   S   A   +S  W + QY ++G AEVF  +G LEF Y
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVES--GAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFY 498

Query: 529 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYL 588
           +++PDAM+S+ SA A L   LG + +S++ +++   T   + GQ  W++ N+N+G  DY 
Sbjct: 499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYF 556

Query: 589 YWLLAVLSVINFCAFLYSAYRYKYR 613
           +WLLA LS++N   + +SA RYK +
Sbjct: 557 FWLLAGLSLVNMAVYFFSAARYKQK 581

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/571 (40%), Positives = 333/571 (58%), Gaps = 25/571 (4%)

Query: 33  ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
           E +N    L      G+  ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct: 24  EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query: 93  VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
           +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct: 81  ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
           +TL A++ V  P              C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
           ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
              FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315

Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
            KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R+ PI A  I+ 
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374

Query: 389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 448
           +V+ ++  TL VQQ  +MN  +   ++P     VF  L + + + +Y    VP  RR TG
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434

Query: 449 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 508
            P+G + LQR+GIGL +S+LS+  A I E  R   A           AM   S +W + Q
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD-------FVAM---SIFWQIPQ 484

Query: 509 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 568
           Y L+GIAEVF  +G +EF Y+E+PDAM+S+ SA A L   +G + +S++ +++   T   
Sbjct: 485 YILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA-- 542

Query: 569 KKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 599
             G+  W+  ++N G  DY +WLL  L ++N
Sbjct: 543 LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 316/563 (56%), Gaps = 53/563 (9%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++HG P      TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct: 31  IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P       
Sbjct: 90  MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142

Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
            ++ +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
           FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
           SP+T V QVLVAA+RK +            +VP   +                       
Sbjct: 262 SPITSVCQVLVAAYRKSN-----------LKVPEDST----------------------- 287

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
             E   N +PWKLCTVTQVEEVK L+RLVPI A  I+ +V+ ++  TL VQQ   M   +
Sbjct: 288 -DEGDANTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346

Query: 411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSV 470
           G  ++P   + +F   S+ + + +Y    VPL RR TG  +G ++LQR+GIGL VS+LS+
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406

Query: 471 IWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE 530
            +A I E  R   A     +      +  L+ +W + QY L+G A VF  VG +EF YE+
Sbjct: 407 TFAAIVETVRLQLA--RDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQ 464

Query: 531 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLY 589
           +PD+M+S+ SA+A L   LG + +S++ +++  ++     G+  W+ + NIN G  DY +
Sbjct: 465 SPDSMRSLCSAWALLTTTLGNYLSSLIITLVAYLS-----GKDCWIPSDNINNGHLDYFF 519

Query: 590 WLLAVLSVINFCAFLYSAYRYKY 612
           WLL  L  +N   F++ + +Y +
Sbjct: 520 WLLVSLGSVNIPVFVFFSVKYTH 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  363 bits (931), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 209/572 (36%), Positives = 317/572 (55%), Gaps = 19/572 (3%)

Query: 53  NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN 112
            +HG+P       GG I   FIF NE+ E++A  G   NM++++   +H     ++N + 
Sbjct: 15  QLHGRPN---RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172
           NF G S  + +LG F+AD++ GR+WTI   + IY  G+T +T+ A +    P     + +
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232
                 C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN
Sbjct: 132 ------CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN 185

Query: 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSP 292
           ++Y  +    ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP
Sbjct: 186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245

Query: 293 LTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELK 352
            TR+ QV VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +
Sbjct: 246 FTRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE 304

Query: 353 EDVIN----PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
           ED +     P+ W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN 
Sbjct: 305 EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNR 364

Query: 409 HM-GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI 467
           H+    ++P   M VF  +++   +  Y   FV + R+ TG  RG + L R+GIG  +SI
Sbjct: 365 HLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISI 424

Query: 468 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 527
           ++ + AG  E  R++ AI HG      T +P +S  WL+ QY L G+AE F  +G LEF 
Sbjct: 425 IATLVAGFVEVKRKSVAIEHGLLDKPHTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFF 483

Query: 528 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFD 586
           Y++AP++M+S  +A   +A  +G + +++L +++   +  P     NWL   N+N GR +
Sbjct: 484 YDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLE 541

Query: 587 YLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 618
           Y YWL+ VL  +N   +L+ A  Y Y+  Q H
Sbjct: 542 YFYWLITVLQAVNLVYYLWCAKIYTYKPVQVH 573

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  356 bits (913), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 328/589 (55%), Gaps = 16/589 (2%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G P+   S  G W A  F+   E+ ERMAY+G+S N+  +M   +
Sbjct: 6   VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ DA LGRY T  I   IY +G+  +TL  T+ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFD   
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              KT    FFN++  S+  G + A T++VY+Q   GW   +G   + + IS  +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
           P YRH+LP GSP T++A+V+VA+FRK +A   + ++   +E+P      KG+  I  T  
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
            R LD+A+L+   +      W LCT T+VEE K ++R++P+   T + +++L +  TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354

Query: 401 QQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV 459
           +Q  T++  + G   +P   +  F  LS+ + + LY   FV + R+ TG+PRG + LQR+
Sbjct: 355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414

Query: 460 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFC 519
           GIGL   IL +I A + ERYR   A  HG        +P L+ + LL Q+ L+G+A+ F 
Sbjct: 415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLP-LTIFALLPQFVLMGMADSFL 473

Query: 520 IVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 579
            V  LEF Y++AP++MKS+G++Y+  +  +G F +S L S +  +T   KK    W+  N
Sbjct: 474 EVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEIT---KKRGRGWILNN 530

Query: 580 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 628
           +N  R DY Y   AVL+++NF  FL     Y YR+E     D + +E K
Sbjct: 531 LNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  354 bits (908), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 328/587 (55%), Gaps = 35/587 (5%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct: 13  VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            +F+G S    +LGGFLAD++LGR+ TI IF+TI   G   + +   +    P    C  
Sbjct: 72  TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
           P+ ++ QV+ AAFRKR      S ++ LYE       I    +I HTD F  LDKAA+  
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGI----RIEHTDQFHLLDKAAIVA 298

Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
           + D       V  P+PWKL +VT+VEEVK +VRL+PI A TI+      + +T SV+QA 
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query: 405 TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA 464
           TM  ++G  K+P   + VF   +I + L++Y    +P  ++  G P G S LQR+ IGL 
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLV 417

Query: 465 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLL 524
           +S   +  A + E+ R + A S   +      +P +S + L+ Q+ L+G  E F   G L
Sbjct: 418 LSTAGMAAAALVEQKRLSVAKSSSQK-----TLP-ISVFLLVPQFFLVGAGEAFIYTGQL 471

Query: 525 EFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR 584
           +F   ++P  MK++ +        LG F +S L SI+K VT         WLA NIN GR
Sbjct: 472 DFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNINHGR 529

Query: 585 FDYLYWLLAVLSVINF-----CAFLYSAYRYKYRSEQKHGNDYEVME 626
            DY YWLL +LS INF     CA  +   + K   E+++G  + V +
Sbjct: 530 LDYFYWLLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSVED 576

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  352 bits (903), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 210/594 (35%), Positives = 334/594 (56%), Gaps = 18/594 (3%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct: 6   VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
            LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298

Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
            R L++A+L+      +   W+LCT+T+VEE K +++++P+   T + +++L + +TL +
Sbjct: 299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354

Query: 401 QQAYTMNTHM-GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV 459
           +Q  T++  +     +P   +  F   S+ + + +Y   FV   R++TG+PRG + LQR+
Sbjct: 355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414

Query: 460 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP-DLSAYWLLIQYCLIGIAEVF 518
           GIG+ + IL +I A I ERYR   A  HG   +  TA+P  LS + LL QY L+G+A+ F
Sbjct: 415 GIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPIPLSIFTLLPQYVLMGLADAF 472

Query: 519 CIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 578
             +  LEF Y++AP++MKS+G++Y + +  +G F +SIL S +  +T    +G   W+  
Sbjct: 473 IEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQGRG---WIQN 529

Query: 579 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDS 632
           N+N  R D  Y   AVL+++NF  FL     Y+YR++     + E  E  + D+
Sbjct: 530 NLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKEPNMVDN 583

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
224053581	638	predicted protein [Populus trichocarpa]	0.988	0.982	0.852	0.0
225425292	640	PREDICTED: probable peptide/nitrate tran	0.990	0.981	0.819	0.0
449468910	637	PREDICTED: probable peptide/nitrate tran	0.992	0.987	0.813	0.0
356569101	631	PREDICTED: probable peptide/nitrate tran	0.974	0.979	0.822	0.0
357501519	638	Peptide transporter-like protein [Medica	0.974	0.968	0.800	0.0
147771745	612	hypothetical protein VITISV_040927 [Viti	0.955	0.990	0.816	0.0
147866216	626	hypothetical protein VITISV_008303 [Viti	0.971	0.984	0.808	0.0
297811451	625	proton-dependent oligopeptide transport	0.976	0.990	0.808	0.0
15240621	624	putative peptide/nitrate transporter [Ar	0.965	0.980	0.814	0.0
296085541	606	unnamed protein product [Vitis vinifera]	0.936	0.980	0.775	0.0

>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa]

 Score = 1120 bits (2896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/632 (85%), Positives = 580/632 (91%), Gaps = 5/632 (0%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           MGS EIKSPE L ETPAT    S+    KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1   MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F  SSNAVNNFLG
Sbjct: 61  KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q  CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
           +PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+G LKLP
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420

Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 476
           VT MPVFP LSIFLILSLYYS FVP+ RRITGHPRGASQLQRVGIGLA SILSV WA IF
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480

Query: 477 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 536
           ERYRR YAI HGYEFSFLT MP+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540

Query: 537 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 596
           SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINTGRF+Y YWLL VLS
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINTGRFEYFYWLLTVLS 600

Query: 597 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 628
            INFCAFLYSA RYKYR+EQK G   EV+ NK
Sbjct: 601 AINFCAFLYSARRYKYRAEQKFGIQ-EVVTNK 631

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera]

 Score = 1091 bits (2822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/632 (81%), Positives = 569/632 (90%), Gaps = 4/632 (0%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420

Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 476
           VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480

Query: 477 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 536
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540

Query: 537 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 596
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 600

Query: 597 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 628
           VINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 601 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus]

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/637 (81%), Positives = 571/637 (89%), Gaps = 8/637 (1%)

Query: 1   MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
           MGSREIKS   + ETP        S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1   MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60

Query: 55  HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
            GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH  F  SS+AVNNF
Sbjct: 61  RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120

Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
           LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+  F+PNQ  CD++S 
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180

Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
           LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240

Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
           YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300

Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
           RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360

Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLK 414
             NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+G+LK
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420

Query: 415 LPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAG 474
           LPVTCMPVFPGLSIFLILSLYYS FVPL RRITGHP GASQLQRVGIGLA+SILSV WAG
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480

Query: 475 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 534
            FERYRRN+AI  GYE SFL+ MP+LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540

Query: 535 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV 594
           MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P    P+WL+QNINTGRFDY YWLL V
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINTGRFDYFYWLLTV 600

Query: 595 LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 631
           +S+INFC FLYSA++YKYR + + G    +MEN ++D
Sbjct: 601 MSIINFCIFLYSAHKYKYRKDHEVGEG--IMENGMHD 635

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max]

 Score = 1072 bits (2773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/618 (82%), Positives = 556/618 (89%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M S EIKSP    +     +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I 
Sbjct: 1   MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+  F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED  NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
           W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+G+LKLPVTCM
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420

Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 480
           PVFPGLS+FLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WA IFERYR
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480

Query: 481 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
           RNYAI HGY  SFLTAMP+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 541 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 600
           AYAALAGGLGCF A+I+N+IIKS TGN  KGQP+WL+QNINTGRFDY YWLL  LS+INF
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINTGRFDYFYWLLTALSIINF 600

Query: 601 CAFLYSAYRYKYRSEQKH 618
             F+YSA+RYKYR  Q H
Sbjct: 601 AIFVYSAHRYKYREHQVH 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula]

 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/628 (80%), Positives = 563/628 (89%), Gaps = 10/628 (1%)

Query: 1   MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
           M + EIKSPE+ Q+ TP TS S  RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1   MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58

Query: 60  ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
            DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59  EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118

Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAA+RKR  +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D  NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358

Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
            W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+GKLKLPVTC
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418

Query: 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 479
           MPVFPGLS+FLIL+LYY TFVPL +RITGHP GASQLQR+GIGL VSILSV WA IFE+Y
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478

Query: 480 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 539
           RRNYAI + +E SFLT MP+LSAYWLLIQYCLIG+AEVFCIVGLLEFLYEEAPDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538

Query: 540 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 599
           SAYAALAGGLGCF A+ +NS++KS TGN  K Q +WL+QNINTG+FDY YW+L  LS++N
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVN 598

Query: 600 FCAFLYSAYRYKYRSEQ-------KHGN 620
           FC FLYSA+RYKYR++        KH N
Sbjct: 599 FCIFLYSAHRYKYRTQHVYEMESIKHDN 626

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera]

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/620 (81%), Positives = 555/620 (89%), Gaps = 14/620 (2%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR          +D  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410

Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 476
           VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470

Query: 477 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 536
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530

Query: 537 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 596
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 590

Query: 597 VINFCAFLYSAYRYKYRSEQ 616
           VINFC FLYSA RYKYR+ Q
Sbjct: 591 VINFCIFLYSAQRYKYRAFQ 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera]

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/627 (80%), Positives = 557/627 (88%), Gaps = 11/627 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DL K        +  GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413

Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 476
           VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG+F
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473

Query: 477 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 536
           ERYRRNYAI  GYEF+FLT MP LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533

Query: 537 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 596
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 593

Query: 597 VINFCAFLYSAYRYKYRSEQKHGNDYE 623
           VINFC FLYSA RYKYR  Q+   + E
Sbjct: 594 VINFCIFLYSAQRYKYRVAQEGTMEEE 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/622 (80%), Positives = 561/622 (90%), Gaps = 3/622 (0%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           SSVLGGFLADAYLGRYWTIAIFTT+YL   L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
           LVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+DDF  LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360

Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTC 419
           PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTC
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420

Query: 420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY 479
           MPVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE Y
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480

Query: 480 RRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 539
           RR+YAI HG+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540

Query: 540 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 599
           SAYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +N
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLN 598

Query: 600 FCAFLYSAYRYKYRSEQKHGND 621
           FC FL+SA+RYKYR+ +   + 
Sbjct: 599 FCVFLWSAHRYKYRAIESEEDK 620

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/614 (81%), Positives = 557/614 (90%), Gaps = 2/614 (0%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
           WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTCM
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query: 421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 480
           PVFPGLSIFLILSLYYS FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YR
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480

Query: 481 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
           R+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query: 541 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 600
           AYAALAGGLGCFAA+ILN+I+K+ T +      +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598

Query: 601 CAFLYSAYRYKYRS 614
           C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera]

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/632 (77%), Positives = 539/632 (85%), Gaps = 38/632 (6%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED  
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360

Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP 416
            PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G+LKLP
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420

Query: 417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIF 476
           VTCMPVFPGLSIFLILSLYYS FVP+ RRITGHP GASQLQRVGIGLAVSILSV WAG  
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAG-- 478

Query: 477 ERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 536
                                           YCLIGIAEVFCIVGLLEFLYEEAPDAM+
Sbjct: 479 --------------------------------YCLIGIAEVFCIVGLLEFLYEEAPDAMR 506

Query: 537 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 596
           SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++  P+WL+QNINTGRFDYLYWLL V S
Sbjct: 507 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 566

Query: 597 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 628
           VINFC FLYSA RYKYR  Q+   + E +  K
Sbjct: 567 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	634
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.965	0.980	0.770	2.7e-258
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.872	0.970	0.408	3.9e-115
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.878	0.977	0.404	4.8e-110
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.865	0.938	0.391	6.5e-106
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.862	0.927	0.394	1.8e-103
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.388	0.451	0.417	2.3e-93
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.870	0.926	0.364	5e-92
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.867	0.953	0.370	2.7e-91
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.908	0.982	0.345	3.5e-91
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.903	0.984	0.348	8.3e-90

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 2486 (880.2 bits), Expect = 2.7e-258, P = 2.7e-258
 Identities = 473/614 (77%), Positives = 530/614 (86%)

Query:     1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
             M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct:     1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query:    61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
             +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct:    61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query:   121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
             SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct:   121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query:   181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
              AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct:   181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query:   241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
             GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct:   241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query:   301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
             VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF  LDKAALELKED + PSP
Sbjct:   301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360

Query:   361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM 420
             WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+  LKLPVTCM
Sbjct:   361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420

Query:   421 PVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR 480
             PVFPG             FVP+ RRITG+P GASQLQRVGIGLAVSI+SV WAG+FE YR
Sbjct:   421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480

Query:   481 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXX 540
             R+YAI +G+EF+FLT MPDL+AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI  
Sbjct:   481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540

Query:   541 XXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 600
                            ILN+I+K+ T +   G+ +WL+QNINTGRFD LYWLL +LS +NF
Sbjct:   541 AYAALAGGLGCFAATILNNIVKAATRD-SDGK-SWLSQNINTGRFDCLYWLLTLLSFLNF 598

Query:   601 CAFLYSAYRYKYRS 614
             C FL+SA+RYKYR+
Sbjct:   599 CVFLWSAHRYKYRA 612

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 234/573 (40%), Positives = 340/573 (59%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  
Sbjct:     7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
             A ++N V N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P
Sbjct:    65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                N D       +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K
Sbjct:   125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR
Sbjct:   177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
              + PGGSPLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+ +  
Sbjct:   237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295

Query:   345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
             DKAA+E + D I     +PW+LC+VTQVEE+K+++ L+P+ A  I+   + ++  T+ V 
Sbjct:   296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355

Query:   402 QAYTMNTHMGK-LKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVG 460
             Q  TM+ HMGK  ++P   + +F                +PL R+ T + RG +QLQR+G
Sbjct:   356 QGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMG 415

Query:   461 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCI 520
             IGL VSI ++I AG+ E  R +Y  +H    ++      +S +W + QY LIG AEVF  
Sbjct:   416 IGLVVSIFAMITAGVLEVVRLDYVKTHN---AYDQKQIHMSIFWQIPQYLLIGCAEVFTF 472

Query:   521 VGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNI 580
             +G LEF Y++APDAM+S+                 +L +++  +T   K G+P W+  N+
Sbjct:   473 IGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNL 530

Query:   581 NTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 613
             N G  DY ++LLA LS +NF  +L+ + RYKY+
Sbjct:   531 NRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 234/578 (40%), Positives = 335/578 (57%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+   
Sbjct:     8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
               +S +V+N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P
Sbjct:    66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                 C        +C  A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K
Sbjct:   126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
              + PGGSPLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT      
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295

Query:   345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
             DKAA+E + D       S WKLCTVTQVEE+K L+RL+PI A  I+   + ++  T+ V 
Sbjct:   296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355

Query:   402 QAYTMNTHMG-KLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVG 460
             Q  T++ HMG   K+P   + +F                VP  R+ TGH RG +QLQR+G
Sbjct:   356 QGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIG 415

Query:   461 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCI 520
             IGL +SI S++ AGI E  R NY  +H   ++  T +P ++ +W + QY L+G AEVF  
Sbjct:   416 IGLVISIFSMVSAGILEVARLNYVQTHNL-YNEET-IP-MTIFWQVPQYFLVGCAEVFTF 472

Query:   521 VGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNI 580
             +G LEF Y++APDAM+S+                  L +++  VT +   G+P W+A+N+
Sbjct:   473 IGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSG--GRPGWIAKNL 530

Query:   581 NTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 618
             N G  DY +WLLA LS +NF  +L+ A  Y Y+    H
Sbjct:   531 NNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGH 568

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 221/565 (39%), Positives = 324/565 (57%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct:    30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct:    89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
             I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct:   145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct:   202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD + LDKAA+  
Sbjct:   262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query:   352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
             +E+  +    + W+LCTVTQVEE+K L+R+ PI A  I+ + +  +  T+ VQQ   MN 
Sbjct:   321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query:   409 HMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
              +G  +LP   +  F                VPL R+ TG  +G +++QR+GIGL VS+L
Sbjct:   381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query:   469 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY 528
              +  A I E  R + A   G   S    +P +S  W + QY ++G AEVF  +G LEF Y
Sbjct:   441 CMAAAAIVEIIRLHMANDLGLVESG-APVP-ISVLWQIPQYFILGAAEVFYFIGQLEFFY 498

Query:   529 EEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYL 588
             +++PDAM+S+                 ++ +++   T   + GQ  W++ N+N+G  DY 
Sbjct:   499 DQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYF 556

Query:   589 YWLLAVLSVINFCAFLYSAYRYKYR 613
             +WLLA LS++N   + +SA RYK +
Sbjct:   557 FWLLAGLSLVNMAVYFFSAARYKQK 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 225/571 (39%), Positives = 323/571 (56%)

Query:    33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
             E  N  +  G   T     ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct:    23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query:    93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
             +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct:    81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query:   153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
             +TL A++ V  P    C  ++  L  C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct:   141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query:   213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
             ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct:   197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query:   273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
                FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct:   257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315

Query:   333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
              KI HTD ++ LDKAA+    E K    + +PWKLCTVTQVEEVKTL+R+ PI A  I+ 
Sbjct:   316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374

Query:   389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITG 448
             +V+ ++  TL VQQ  +MN  +   ++P     VF                VP  RR TG
Sbjct:   375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434

Query:   449 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQ 508
              P+G + LQR+GIGL +S+LS+  A I E  R   A     +F    AM   S +W + Q
Sbjct:   435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLA----QDF---VAM---SIFWQIPQ 484

Query:   509 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNP 568
             Y L+GIAEVF  +G +EF Y+E+PDAM+S+                 ++ +++   T   
Sbjct:   485 YILMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA-- 542

Query:   569 KKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 599
               G+  W+  ++N G  DY +WLL  L ++N
Sbjct:   543 LGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
 Identities = 107/256 (41%), Positives = 156/256 (60%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             +++HG P    + TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct:    31 IDIHGNPPLKQT-TGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P +  C  
Sbjct:    90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAE--C-- 145

Query:   172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
                 +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct:   146 ----IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query:   231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
             FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct:   202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query:   291 SPLTRVAQVLVAAFRK 306
             SP+T V QVLVAA+RK
Sbjct:   262 SPITSVCQVLVAAYRK 277

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 208/571 (36%), Positives = 306/571 (53%)

Query:    54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
             +HG+P  +  K GG I   FIF NE+ E++A  G   NM++++   +H     ++N + N
Sbjct:    16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72

Query:   114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
             F G S  + +LG F+AD++ GR+WTI   + IY  G+T +T+ A +    P     + + 
Sbjct:    73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131

Query:   174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
                  C  A + Q+  LY  L +   G+ GIRPCV +FGADQFDE   +  T    +FN+
Sbjct:   132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186

Query:   234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
             +Y  +    ++A T++V+IQ   GWG   G   +AM +S + F  G  LYRH +P GSP 
Sbjct:   187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246

Query:   294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
             TR+ QV VAAFRKR     S   + LY      + I   GK+ HT     LDKAA+  +E
Sbjct:   247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305

Query:   354 DVINPS--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
             D + P   P  W+L TV +VEE+K+++R+ PI A  I+L     +  T S+QQA TMN H
Sbjct:   306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365

Query:   410 M-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLAVSIL 468
             +    ++P   M VF               FV + R+ TG  RG + L R+GIG  +SI+
Sbjct:   366 LTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISII 425

Query:   469 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY 528
             + + AG  E  R++ AI HG      T +P +S  WL+ QY L G+AE F  +G LEF Y
Sbjct:   426 ATLVAGFVEVKRKSVAIEHGLLDKPHTIVP-ISFLWLIPQYGLHGVAEAFMSIGHLEFFY 484

Query:   529 EEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQN-INTGRFDY 587
             ++AP++M+S                  +L +++   +  P  G  NWL  N +N GR +Y
Sbjct:   485 DQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPD-GS-NWLPDNNLNRGRLEY 542

Query:   588 LYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 618
              YWL+ VL  +N   +L+ A  Y Y+  Q H
Sbjct:   543 FYWLITVLQAVNLVYYLWCAKIYTYKPVQVH 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 217/585 (37%), Positives = 316/585 (54%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct:    13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
              +F+G S    +LGGFLAD++LGR+ TI IF+TI   G TG    AT K+       C  
Sbjct:    72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                   +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct:   130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct:   186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
             P+ ++ QV+ AAFRKR      S ++ LYE       I+    I HTD F  LDKAA+  
Sbjct:   246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298

Query:   352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
             + D       V  P+PWKL +VT+VEEVK +VRL+PI A TI+      + +T SV+QA 
Sbjct:   299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358

Query:   405 TMNTHMGKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRVGIGLA 464
             TM  ++G  K+P   + VF                +P  ++  G P G S LQR+ IGL 
Sbjct:   359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLV 417

Query:   465 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLL 524
             +S   +  A + E+ R + A S   +      +P +S + L+ Q+ L+G  E F   G L
Sbjct:   418 LSTAGMAAAALVEQKRLSVAKSSSQK-----TLP-ISVFLLVPQFFLVGAGEAFIYTGQL 471

Query:   525 EFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQNINTGR 584
             +F   ++P  MK++                  L SI+K VT         WLA NIN GR
Sbjct:   472 DFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNINHGR 529

Query:   585 FDYLYWLLAVLSVINF-----CAFLYSAYRYKYRSEQKHGNDYEV 624
              DY YWLL +LS INF     CA  +   + K   E+++G  + V
Sbjct:   530 LDYFYWLLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSV 574

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 205/594 (34%), Positives = 320/594 (53%)

Query:    41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
             +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct:     6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query:   101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
             H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct:    64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query:   161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
                P +  C   +  + +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct:   124 GLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query:   221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
                K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct:   180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query:   281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
              LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct:   240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSS 298

Query:   341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
              R L++A+L+      +   W+LCT+T+VEE K +++++P+   T + +++L + +TL +
Sbjct:   299 LRFLNRASLKTG----STHKWRLCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFI 354

Query:   401 QQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRV 459
             +Q  T++  +     +P   +  F               FV   R++TG+PRG + LQR+
Sbjct:   355 KQGTTLDRRLTNNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRM 414

Query:   460 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP-DLSAYWLLIQYCLIGIAEVF 518
             GIG+ + IL +I A I ERYR   A  HG   +  TA+P  LS + LL QY L+G+A+ F
Sbjct:   415 GIGMILHILIMIIASITERYRLKVAAEHG--LTHQTAVPIPLSIFTLLPQYVLMGLADAF 472

Query:   519 CIVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQ 578
               +  LEF Y++AP++MKS+                 IL S +  +T   K+G+  W+  
Sbjct:   473 IEIAKLEFFYDQAPESMKSLGTSYTSTSMAVGYFMSSILLSSVSQIT--KKQGR-GWIQN 529

Query:   579 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYDS 632
             N+N  R D  Y   AVL+++NF  FL     Y+YR++     + E  E  + D+
Sbjct:   530 NLNESRLDNYYMFFAVLNLLNFILFLVVIRFYEYRADVTQSANVEQKEPNMVDN 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 205/589 (34%), Positives = 313/589 (53%)

Query:    41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
             +G  YT   T V++ G P+   S  G W A  F+   E+ ERMAY+G+S N+  +M   +
Sbjct:     6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63

Query:   101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
             H+    SSN V N++G S  + +LG ++ DA LGRY T  I   IY +G+  +TL  T+ 
Sbjct:    64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123

Query:   161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
                P +  C   +  + +CE A   Q+   +  LY    G  G +P +S+ GADQFD   
Sbjct:   124 GIKPPE--CSTTN--VENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query:   221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
                KT    FFN++  S+  G + A T++VY+Q   GW   +G   + + IS  +F +GT
Sbjct:   180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query:   281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
             P YRH+LP GSP T++A+V+VA+FRK +A  +  ++   +E+P      KG+  I  T  
Sbjct:   240 PFYRHKLPTGSPFTKMARVIVASFRKANAPMTH-DITSFHELPSLEYERKGAFPIHPTPS 298

Query:   341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
              R LD+A+L+   +      W LCT T+VEE K ++R++P+   T + +++L +  TL V
Sbjct:   299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354

Query:   401 QQAYTMNTHM-GKLKLPVTCMPVFPGXXXXXXXXXXXXTFVPLCRRITGHPRGASQLQRV 459
             +Q  T++  + G   +P   +  F               FV + R+ TG+PRG + LQR+
Sbjct:   355 KQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRM 414

Query:   460 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFC 519
             GIGL   IL +I A + ERYR   A  HG        +P L+ + LL Q+ L+G+A+ F 
Sbjct:   415 GIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLP-LTIFALLPQFVLMGMADSFL 473

Query:   520 IVGLLEFLYEEAPDAMKSIXXXXXXXXXXXXXXXXXILNSIIKSVTGNPKKGQPNWLAQN 579
              V  LEF Y++AP++MKS+                  L S +  +T   K+G+  W+  N
Sbjct:   474 EVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEIT--KKRGR-GWILNN 530

Query:   580 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 628
             +N  R DY Y   AVL+++NF  FL     Y YR+E     D + +E K
Sbjct:   531 LNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYR6	PTR49_ARATH	No assigned EC number	0.8143	0.9652	0.9807	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	634
pfam00854	372	pfam00854, PTR2, POT family	3e-59
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-17
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	5e-15
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	4e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  202 bits (517), Expect = 3e-59
 Identities = 110/414 (26%), Positives = 180/414 (43%), Gaps = 46/414 (11%)

Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
           + TI + + IY  G   +TL A      P Q                    +   Y  LY
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40

Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
           +   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A  +  Y+Q  
Sbjct: 41  LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97

Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
            G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA + R      
Sbjct: 98  VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157

Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
                LY    K++    S    HT        A + +                 V  ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207

Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPVFPGLSIFLIL 432
            ++ ++PI A  I+ + + T+  TL V+Q  TM+  +  L ++P      F  L++ ++L
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILL 267

Query: 433 SLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS 492
            +      PL R      RG +  QR G+G+ + I++   A I E  R  YA + G    
Sbjct: 268 PILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSP 323

Query: 493 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALA 546
             T    L   W L +  + G+       G LEF  +  P +M S+ +  +A A
Sbjct: 324 GWTVP--LFILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
           IF  E+ ER +Y+G+   ++ +++Y +          ++   + +  +   + ++GG+LA
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
           D  LG   TI +   +   G   + + +                                
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119

Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
           LY  L +   G    +P +SS   + + +         D  F  FY+ + +G+++A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
             + + +GW   FG  A+ M I  ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 78.3 bits (193), Expect = 5e-15
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)

Query: 92  MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
           M T +  Y+++    +   A N    F  +   + ++G  +AD++LG++ TI   + +Y+
Sbjct: 6   MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65

Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
            G    +L A   +  P  D       L+G                L +   G  GI+PC
Sbjct: 66  VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105

Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
           VS+FG DQF+ER    +    RFF+FFY ++  G++ +  +       V     +  +  
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162

Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
           AFG   I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
           +F  E+ ER +Y+G+   +  ++       F+   +      +  +    + +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
             G   T+          L GI L                   +LG    A S   +Y  
Sbjct: 75  VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103

Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            + Y  G    G+   +   SS     ++   +      D  F  FY+S+ +G+ ++  L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
              I   +G+   F   A+ M I  + FF G  + R 
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)

Query: 72  LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
           L +F       +    LS  +       +  S + +   V+ F       S+L G+L+D 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
           + GR   + +   ++  G   +                            A S  +L + 
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93

Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
             L   G G   + P  ++  A+ F  +         R    F     +GA++   L   
Sbjct: 94  RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145

Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
           +    GW   F  LAI   +  +L      L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)

Query: 83  MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
           +    L   +  ++   +  S  +    +  F      +  L G L+D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
             ++  GL  +   +                          S  +L +  VL   G G  
Sbjct: 69  LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100

Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
            + P  ++  AD F            R          +GA +   L   +    GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154

Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
             LAI   ++ +L  +  P          P       LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	634
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
PRK12382	392	putative transporter; Provisional	99.95
PRK10504	471	putative transporter; Provisional	99.95
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.94
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.94
TIGR00900	365	2A0121 H+ Antiporter protein.	99.94
TIGR00893	399	2A0114 d-galactonate transporter.	99.94
KOG0569	485	consensus Permease of the major facilitator superf	99.94
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.93
TIGR00891	405	2A0112 putative sialic acid transporter.	99.93
PRK12307	426	putative sialic acid transporter; Provisional	99.93
PRK09952	438	shikimate transporter; Provisional	99.93
PRK09705	393	cynX putative cyanate transporter; Provisional	99.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.93
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.93
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.93
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.93
KOG0254	513	consensus Predicted transporter (major facilitator	99.93
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.92
PRK10091	382	MFS transport protein AraJ; Provisional	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.92
PRK03699	394	putative transporter; Provisional	99.92
TIGR00898	505	2A0119 cation transport protein.	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
PRK03633	381	putative MFS family transporter protein; Provision	99.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
PRK15075	434	citrate-proton symporter; Provisional	99.91
PRK03893	496	putative sialic acid transporter; Provisional	99.91
TIGR00895	398	2A0115 benzoate transport.	99.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.91
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.9
PRK11043	401	putative transporter; Provisional	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.9
KOG2532	466	consensus Permease of the major facilitator superf	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
PRK10133	438	L-fucose transporter; Provisional	99.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.87
PRK11010	491	ampG muropeptide transporter; Validated	99.87
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.87
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.85
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.84
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.84
TIGR00901	356	2A0125 AmpG-related permease.	99.83
PRK11902	402	ampG muropeptide transporter; Reviewed	99.82
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.81
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.81
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.79
PRK09848	448	glucuronide transporter; Provisional	99.78
PRK10429	473	melibiose:sodium symporter; Provisional	99.77
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.77
PRK09669	444	putative symporter YagG; Provisional	99.77
TIGR00805	633	oat sodium-independent organic anion transporter.	99.75
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.75
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.75
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.75
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.75
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.73
PF13347	428	MFS_2: MFS/sugar transport protein	99.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.73
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.73
KOG2615	451	consensus Permease of the major facilitator superf	99.72
PRK11462	460	putative transporter; Provisional	99.72
PTZ00207	591	hypothetical protein; Provisional	99.72
KOG2533	495	consensus Permease of the major facilitator superf	99.7
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.7
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.7
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.59
COG2211	467	MelB Na+/melibiose symporter and related transport	99.57
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.5
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.49
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.48
PRK09952	438	shikimate transporter; Provisional	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.43
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.43
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
PRK05122	399	major facilitator superfamily transporter; Provisi	99.4
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.4
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.39
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.39
PRK03699	394	putative transporter; Provisional	99.39
TIGR00893	399	2A0114 d-galactonate transporter.	99.38
PRK11663	434	regulatory protein UhpC; Provisional	99.37
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.36
PRK09874	408	drug efflux system protein MdtG; Provisional	99.35
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
KOG2563	480	consensus Permease of the major facilitator superf	99.35
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.34
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.34
PRK03545	390	putative arabinose transporter; Provisional	99.33
PRK09528	420	lacY galactoside permease; Reviewed	99.32
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
PRK03893	496	putative sialic acid transporter; Provisional	99.31
PRK12382	392	putative transporter; Provisional	99.31
TIGR00891	405	2A0112 putative sialic acid transporter.	99.31
PRK10489	417	enterobactin exporter EntS; Provisional	99.3
PRK15075	434	citrate-proton symporter; Provisional	99.3
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.28
KOG3626	735	consensus Organic anion transporter [Secondary met	99.28
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.27
PRK03633	381	putative MFS family transporter protein; Provision	99.27
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.25
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.23
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.22
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.21
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.18
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.16
PLN00028	476	nitrate transmembrane transporter; Provisional	99.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.14
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.14
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.14
TIGR00900	365	2A0121 H+ Antiporter protein.	99.14
PRK12307	426	putative sialic acid transporter; Provisional	99.14
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.12
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.12
PRK10504	471	putative transporter; Provisional	99.11
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.09
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.09
PRK10091	382	MFS transport protein AraJ; Provisional	99.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.07
TIGR00895	398	2A0115 benzoate transport.	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.07
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.03
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.02
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.02
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.02
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.02
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.02
PRK10133	438	L-fucose transporter; Provisional	99.01
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.99
PRK11902	402	ampG muropeptide transporter; Reviewed	98.99
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.98
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.98
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.97
PRK10054	395	putative transporter; Provisional	98.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.88
TIGR00898	505	2A0119 cation transport protein.	98.87
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.85
TIGR00901	356	2A0125 AmpG-related permease.	98.85
PRK09848	448	glucuronide transporter; Provisional	98.85
KOG0569	485	consensus Permease of the major facilitator superf	98.84
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.8
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.79
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.79
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.79
PF13347	428	MFS_2: MFS/sugar transport protein	98.78
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.77
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.75
KOG3762	618	consensus Predicted transporter [General function	98.75
PRK11043	401	putative transporter; Provisional	98.74
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.74
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.72
PRK10429	473	melibiose:sodium symporter; Provisional	98.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.68
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.66
PRK09669	444	putative symporter YagG; Provisional	98.64
KOG2532	466	consensus Permease of the major facilitator superf	98.64
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.57
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.57
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.56
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.55
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.54
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.52
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.47
COG0477	338	ProP Permeases of the major facilitator superfamil	98.46
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.43
PRK11462	460	putative transporter; Provisional	98.42
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.41
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.36
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.34
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.34
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.29
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.28
KOG0637	498	consensus Sucrose transporter and related proteins	98.26
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.24
COG2211	467	MelB Na+/melibiose symporter and related transport	98.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.2
PTZ00207	591	hypothetical protein; Provisional	98.18
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.15
KOG3762	618	consensus Predicted transporter [General function	98.14
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.1
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.06
KOG2533	495	consensus Permease of the major facilitator superf	98.05
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.01
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.0
PF12832	77	MFS_1_like: MFS_1 like family	97.91
KOG0254	513	consensus Predicted transporter (major facilitator	97.9
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.89
TIGR00805	633	oat sodium-independent organic anion transporter.	97.88
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.87
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.65
KOG2615	451	consensus Permease of the major facilitator superf	97.51
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.41
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.38
PRK03612	521	spermidine synthase; Provisional	97.15
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.12
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.06
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.95
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.92
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.86
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.79
KOG2563	480	consensus Permease of the major facilitator superf	96.6
KOG3626	735	consensus Organic anion transporter [Secondary met	96.34
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.28
KOG3810	433	consensus Micronutrient transporters (folate trans	96.15
KOG0637	498	consensus Sucrose transporter and related proteins	95.89
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.71
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.69
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.42
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.2
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.09
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.63
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.22
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.58
KOG3097	390	consensus Predicted membrane protein [Function unk	92.31
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.24
COG3202	509	ATP/ADP translocase [Energy production and convers	90.98
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	90.96
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.37
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.88
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	88.31
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	86.4
COG0477	338	ProP Permeases of the major facilitator superfamil	85.33

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=3.5e-55  Score=479.26  Aligned_cols=546  Identities=44%  Similarity=0.748  Sum_probs=485.7

Q ss_pred             CccccCCCCccccc---cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHH
Q 006712           50 TPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG  126 (634)
Q Consensus        50 ~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G  126 (634)
                      +..++++++. .+.   +++.|+++.++++.+.++++++|++..++..|++.++|.+...+...++.|.....+.+++++
T Consensus        16 ~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~   94 (571)
T KOG1237|consen   16 TSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA   94 (571)
T ss_pred             ceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence            4456665555 444   789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhh
Q 006712          127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRP  206 (634)
Q Consensus       127 ~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~  206 (634)
                      +++|.|+||++++.++.++..+|+.++.+++..+.+.|.  .| ...+....|+.+.+.....++.++.+..+|.|+.+|
T Consensus        95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~  171 (571)
T KOG1237|consen   95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP  171 (571)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC
Confidence            999999999999999999999999999999888888876  33 111123469999999999999999999999999999


Q ss_pred             hHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccC
Q 006712          207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (634)
Q Consensus       207 ~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~  286 (634)
                      +..++.+|||++..+.++..+.++|+|+|+..++|..++-++..|++++.||.+.|.++.+++++++++++...+.|+++
T Consensus       172 ~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~  251 (571)
T KOG1237|consen  172 CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK  251 (571)
T ss_pred             cchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee
Confidence            99999999999777667777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccc---cCCCCCCcc
Q 006712          287 LPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWKL  363 (634)
Q Consensus       287 ~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~  363 (634)
                      ++.++|+.++.+++..+.++++...+.++.. +      +..........++++.+++|+++.+...+   .....||+.
T Consensus       252 ~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~l  324 (571)
T KOG1237|consen  252 KPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRL  324 (571)
T ss_pred             CCCCCchhHHHHHHHHHHHHHhccCCCcchh-c------cccccccccccCCcccchhhHhhccCCcccccccccCCccC
Confidence            9999999999999999999998877665433 2      11111122334466778888887665432   235688999


Q ss_pred             ccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCC-ccccCccccchhHHHHHHHHHHHHHHHhhh
Q 006712          364 CTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPL  442 (634)
Q Consensus       364 ~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  442 (634)
                      |+.+++|+.|++++.+++|++.+.+++.+.|+.+.+++|+..|+++.++ +.+|++.++.+..+..++..|+++++..|+
T Consensus       325 ct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~  404 (571)
T KOG1237|consen  325 CTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPF  404 (571)
T ss_pred             CCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhh
Confidence            9999999999999999999999999999999999999999999999987 999999999999999999999999999999


Q ss_pred             hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 006712          443 CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVG  522 (634)
Q Consensus       443 ~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~  522 (634)
                      .||..+++.+++.++++++|+++..++|...+.+|.+|++.+.+.     ....++ +|.+|+++||+++|++|++..++
T Consensus       405 ~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~-----~~~~~~-mSi~W~iPQyvLig~~Evf~~vg  478 (571)
T KOG1237|consen  405 ARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL-----LVETNP-MSILWQIPQYVLLGAGEVFTSVG  478 (571)
T ss_pred             hhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc-----cCCCCC-eeHHHHHHHHHHHHHHHHHHhhh
Confidence            999988777899999999999999999999999999998877661     111345 99999999999999999999999


Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccc-cCCccchhhHHHHHHHHHHHHHHH
Q 006712          523 LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFC  601 (634)
Q Consensus       523 ~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~a~~~~v~~~  601 (634)
                      .++|.++++|++||+.+++++.+..++|++++..++.++...++  +  ..+|++ +++|..+++++||+++.+..++..
T Consensus       479 ~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~  554 (571)
T KOG1237|consen  479 GLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFL  554 (571)
T ss_pred             hHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999887663  2  457999 999999999999999999999999


Q ss_pred             HHHHhhccceecccc
Q 006712          602 AFLYSAYRYKYRSEQ  616 (634)
Q Consensus       602 ~~~~~~~~~~~~~~~  616 (634)
                      .+.++.++|+++..+
T Consensus       555 ~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  555 YFLICAKRYDYKDDK  569 (571)
T ss_pred             heEEEEEeeeecccc
Confidence            999999999887544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=8e-43  Score=362.97  Aligned_cols=462  Identities=18%  Similarity=0.258  Sum_probs=357.6

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhH
Q 006712           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW  137 (634)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~  137 (634)
                      ...-+|||.++.++..+++||++|||+...+..|+..+++    +|.+++.-+.+.|....++.+++|||+|||++|+|+
T Consensus        14 ~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~   93 (498)
T COG3104          14 MKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR   93 (498)
T ss_pred             cccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence            3445689999999999999999999999999999999998    999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC
Q 006712          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (634)
Q Consensus       138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (634)
                      ++..+.+++++|.++++.+..                          .....++++..++++|.|+++++..++++|++|
T Consensus        94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~  147 (498)
T COG3104          94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP  147 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence            999999999999999998620                          245789999999999999999999999999999


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCC--CCCCcHH-
Q 006712          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLT-  294 (634)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~-  294 (634)
                      +++++    |..+++++|++.|+|+.++|++.+++.+++||+.+|.++++.+.++++.+.+.++......  ++.++.. 
T Consensus       148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~  223 (498)
T COG3104         148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF  223 (498)
T ss_pred             CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence            99987    9999999999999999999999999999999999999999999999999998887765442  2222221 


Q ss_pred             -----HHHHHHHHHHhhh-cccccccccccccccCCCccccCCCcccccCCcchH-HHHHHhhhcc-ccCCCCCCccccc
Q 006712          295 -----RVAQVLVAAFRKR-HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAALELKE-DVINPSPWKLCTV  366 (634)
Q Consensus       295 -----~~~~v~~~a~~~~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~-~~~~~~~~~~~~~  366 (634)
                           ....++....... ..         +                ...+..+. +......... .-.....|   .+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~---------~----------------l~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~  275 (498)
T COG3104         224 NFLLPVLGGLVVMILAALLTL---------L----------------LNQNTFSGVLLVISILIAIIYFAEAFRS---PK  275 (498)
T ss_pred             hhhhhhHHHHHHHHHHHHHHH---------H----------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc---Cc
Confidence                 1111111111110 00         0                00000000 0000000000 00000011   11


Q ss_pred             hhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHh-hcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhcc
Q 006712          367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR  445 (634)
Q Consensus       367 ~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr  445 (634)
                      .. +++||++..++++++.++||+++.|+.+.+..++. ..+++..|+++++++++++|++.++++.|+..++..|++++
T Consensus       276 ~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~  354 (498)
T COG3104         276 VF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG  354 (498)
T ss_pred             cH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcC
Confidence            22 67899999999999999999999999998877764 44555456899999999999999999999999999998877


Q ss_pred             ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 006712          446 ITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLE  525 (634)
Q Consensus       446 ~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~  525 (634)
                      .    +.++...++++|+++++++++++........   ..+          +..|.+|+++.|++.++||.+.+|.+++
T Consensus       355 ~----~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---~~~----------~~~s~~~lil~y~l~s~gEL~iSpvGLs  417 (498)
T COG3104         355 N----KQPSTPIKFALGLILAGLGFLILLLAGIWFG---GPS----------GLVSVWWLVLSYVLQSFGELFISPVGLS  417 (498)
T ss_pred             C----CCCCcchHHHHHHHHHHHHHHHHHHHHHhhc---CCC----------CCcCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            4    2488899999999999999988877643310   001          1268999999999999999999999999


Q ss_pred             HHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 006712          526 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLY  605 (634)
Q Consensus       526 ~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~  605 (634)
                      ++++.+|+.+++.+|+.|.+.+..|+.++..+.+.... ++      .     ..+..+...+|+.++...++.....+.
T Consensus       418 ~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~------~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         418 MVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD------P-----AYTAFIEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-cc------h-----hhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888773221 00      0     001112335788887777766666665


Q ss_pred             hhccce
Q 006712          606 SAYRYK  611 (634)
Q Consensus       606 ~~~~~~  611 (634)
                      ..++.+
T Consensus       486 ~~~~~~  491 (498)
T COG3104         486 LSPKLN  491 (498)
T ss_pred             hhHHHH
Confidence            555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=1.5e-38  Score=348.55  Aligned_cols=463  Identities=12%  Similarity=0.167  Sum_probs=336.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      ++|||.++.+++.++++++++|++..+++.|+++++|++.++++++.+.|....++.++++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      ++.++.++++++.                           .....++++|+++|+|.|...|+..++++|+||+++++  
T Consensus        90 ~~~~g~~~~~~~~---------------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~--  140 (489)
T PRK10207         90 VLAIGYFMTGMSL---------------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR--  140 (489)
T ss_pred             HHHHHHHHHHHhc---------------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh--
Confidence            9999999998862                           11234668899999999999999999999999987532  


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccC--CCCCCcHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVLVA  302 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~  302 (634)
                        |++.++++|++.|+|..+||.+++++.++.|||+.|++..+.++++++.+...++.+++.  ++++++.+ ..+.+..
T Consensus       141 --~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~  217 (489)
T PRK10207        141 --LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMS-FSKLLLV  217 (489)
T ss_pred             --hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchh-hhhHHHH
Confidence              688999999999999999999999999999999999998776666666666655444332  22222221 1111100


Q ss_pred             HHhhhcccccccccccccccCCCccccCCCcccccCCcchH-HHHHH------hhhccccCCCCCCccccchhhhHHHHH
Q 006712          303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAA------LELKEDVINPSPWKLCTVTQVEEVKTL  375 (634)
Q Consensus       303 a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~------~~~~~~~~~~~~~~~~~~~~~~~~k~~  375 (634)
                      ....-......  .+ ..+               +...... .....      ....+          ...+ ..++++.
T Consensus       218 ~~~~~~~~~~~--~~-~~~---------------~~~~~~~~~~~~~~i~~~~f~~~~----------~~~~-~~~r~r~  268 (489)
T PRK10207        218 LLGSVVMIFVC--AW-LMH---------------NVEVANLVLIVLSIVVTIIFFREA----------FKLD-KTGRNKM  268 (489)
T ss_pred             HHHHHHHHHHH--HH-HHh---------------hhhHHHHHHHHHHHHHHHHHHHHH----------hcCC-HHHHHHH
Confidence            00000000000  00 000               0000000 00000      00000          0011 2335555


Q ss_pred             HhHhhHHHHHHHHHHHHHhhhhHHHHHHh-hcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCC
Q 006712          376 VRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGAS  454 (634)
Q Consensus       376 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~  454 (634)
                      +....+++....+|..+.|..+.+..+.. ..+....++.+++.+++++|++.++++.|+.+++.+|+.+|..    .++
T Consensus       269 ~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~----~~~  344 (489)
T PRK10207        269 FVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK----DLS  344 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC----CCC
Confidence            55666677788999999998776665554 4666666788888999999999999999999999988887743    378


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 006712          455 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA  534 (634)
Q Consensus       455 ~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~  534 (634)
                      +..++.+|+++.+++++.+...+...   ...++         . .+.+|+++.+++.++||++.+|+.++++.+.+|++
T Consensus       345 ~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~~---------~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~  411 (489)
T PRK10207        345 MPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQG---------L-TSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH  411 (489)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCC---------c-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH
Confidence            99999999999999987665433210   00000         1 57899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceec
Q 006712          535 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  613 (634)
Q Consensus       535 ~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~  613 (634)
                      ++|.++|++++.+++|+.+|..+........    ....+.    .....+..+|..+++..++..++++++.++.++.
T Consensus       412 ~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~----~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        412 LMGFILGMWFLTQAAAFLLGGYVATFTAVPD----NITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887553200    000000    0011245678888888887777777776665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=2e-36  Score=327.00  Aligned_cols=418  Identities=16%  Similarity=0.190  Sum_probs=314.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      +||+.++.+++.++++++++|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            48889999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.+++....                           .+...++++..+.++|.|...++..++++|+||+++++   
T Consensus        86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~---  135 (493)
T PRK15462         86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR---  135 (493)
T ss_pred             HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence            999887665431                           12233555566677888888899999999999987433   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCC-CCCCcH--HHHH----H
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPL--TRVA----Q  298 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~--~~~~----~  298 (634)
                       |.++++++|...|+|++++|.+++++.+.+||++.|.++++.++++++.++..++.+.+.. .+.++.  ++..    .
T Consensus       136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  214 (493)
T PRK15462        136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG  214 (493)
T ss_pred             -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence             9999999999999999999999999999999999999988877777777766555443321 111111  1110    0


Q ss_pred             HH-HHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHH-HH---hhhccccCCCCCCccccchhhhHHH
Q 006712          299 VL-VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK-AA---LELKEDVINPSPWKLCTVTQVEEVK  373 (634)
Q Consensus       299 v~-~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~---~~~~~~~~~~~~~~~~~~~~~~~~k  373 (634)
                      .+ ....-...          +...           .... ......-. ..   ...-.... .      .....+|+|
T Consensus       215 ~~~~~~~~~~~----------~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~er~  265 (493)
T PRK15462        215 WLLVLLVATPA----------LITV-----------LFWK-EWSVYALIVATIIGLGVLAKIY-R------KAENQKQRK  265 (493)
T ss_pred             HHHHHHHHHHH----------HHHH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHH-H------hcCCHHHHh
Confidence            00 00000000          0000           0000 00000000 00   00000000 0      001235788


Q ss_pred             HHHhHhhHHHHHHHHHHHHHhhhhHHHHHH-hhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 006712          374 TLVRLVPIPACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRG  452 (634)
Q Consensus       374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~  452 (634)
                      ++...+++++..++||..+.|.++.+...+ .+.|+++.++.+|+++++++|++.++++.|+..++..++.||.    +.
T Consensus       266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~----~~  341 (493)
T PRK15462        266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN----RT  341 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC----CC
Confidence            888999999999999999999998665554 5688888899999999999999999999999998887775542    13


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          453 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  532 (634)
Q Consensus       453 ~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P  532 (634)
                      ++...|+.+|++++++++.++.+....    ...+|         . +|.+|++..|++.++||.+.+|..++++.+.+|
T Consensus       342 ~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~---------~-~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP  407 (493)
T PRK15462        342 VRIWGKFALGLGLMSAGFCILTLSARW----SAMYG---------H-SSLPLMVLGLAVMGFAELFIDPVAMSQITRIEI  407 (493)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCC---------C-cCHHHHHHHHHHHHHHHHHHChHHHHHHHHhCh
Confidence            788899999999999999887665422    11111         1 578999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHh-HHHHHHHHHHHHHh
Q 006712          533 DAMKSIGSAYAALAG-GLGCFAASILNSII  561 (634)
Q Consensus       533 ~~~rg~~~g~~~~~~-~ig~~lg~~l~~~v  561 (634)
                      ++.+|++||++.+.. .+|+.++..+....
T Consensus       408 ~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        408 PGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999998854 78888888877755

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2.1e-36  Score=331.44  Aligned_cols=453  Identities=13%  Similarity=0.151  Sum_probs=334.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~  142 (634)
                      .+|++.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++.+++++++|+++||++|||++++++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            46788899999999999999999999999999988  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcc
Q 006712          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (634)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~  222 (634)
                      .++..++.++++++                            .+...++++|++.|+|.|...|+..++++|++|+++.+
T Consensus        86 ~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~  137 (475)
T TIGR00924        86 GIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP  137 (475)
T ss_pred             HHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence            99999998888875                            45667888999999999999999999999999876421


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHH----HH-H
Q 006712          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT----RV-A  297 (634)
Q Consensus       223 ~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~-~  297 (634)
                         .|+++++++|.+.|+|..+||.+++++.++.||++.|++.++.++++++.+...++.+++.++++++.+    +. .
T Consensus       138 ---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (475)
T TIGR00924       138 ---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGK  214 (475)
T ss_pred             ---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHH
Confidence               188899999999999999999999999998999999999887777776666665655543332222111    00 0


Q ss_pred             --HH----HHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhH
Q 006712          298 --QV----LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE  371 (634)
Q Consensus       298 --~v----~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  371 (634)
                        ..    +....+.... .......               ...     ......+........ ...|    ..+. .+
T Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~-~~~~----~~~~-~~  267 (475)
T TIGR00924       215 LLLALLAALALVFFCAWL-MHHVVIA---------------NIL-----LMTVTLAVIIFFFRL-AFKP----RLDA-VA  267 (475)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhccHHH---------------HHH-----HHHHHHHHHHHHHHH-HHhc----cCCH-HH
Confidence              00    0001111000 0000000               000     000000000000000 0001    0011 23


Q ss_pred             HHHHHhHhhHHHHHHHHHHHHHhhhhHHHH-HHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCC
Q 006712          372 VKTLVRLVPIPACTIMLNVILTEFLTLSVQ-QAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHP  450 (634)
Q Consensus       372 ~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~  450 (634)
                      +++....++++++..++|+.+.|..+.+.. +...++.+++++.+++++++++|++.+++++|+..++..++.||.    
T Consensus       268 ~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----  343 (475)
T TIGR00924       268 RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----  343 (475)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----
Confidence            444455778888899999999998886544 445577777788899999999999999999999887766666652    


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          451 RGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE  530 (634)
Q Consensus       451 ~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~  530 (634)
                      .+++...++.+|+++.+++++.+++....    ..+         ..+ ++++|+++++++.++||.+..|..++++++.
T Consensus       344 ~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---------~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~  409 (475)
T TIGR00924       344 KDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA---------GGL-TSPWFMVLIYLFQTLGELMISPLGLSWWTKI  409 (475)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            23677788999999999999888765311    111         112 6899999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          531 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  610 (634)
Q Consensus       531 ~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~  610 (634)
                      +|+++||+++|++.+...+|+.+++.+........        +|          ..+|..++.+.++..+++++..++.
T Consensus       410 aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       410 APQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ--------GV----------TGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ch----------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887654321        12          3467777777776666666666554


Q ss_pred             e
Q 006712          611 K  611 (634)
Q Consensus       611 ~  611 (634)
                      +
T Consensus       472 ~  472 (475)
T TIGR00924       472 N  472 (475)
T ss_pred             H
Confidence            3

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.4e-35  Score=326.75  Aligned_cols=459  Identities=15%  Similarity=0.207  Sum_probs=331.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      ++++.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+....+..++++|+++||++|||++++++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            57778999999999999999999999999999999999999999999988888888899999999944999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      +.++..+++++.                           .+...++++|+++|+|.|...++..++++|++|+++.+   
T Consensus        98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~---  147 (500)
T PRK09584         98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR---  147 (500)
T ss_pred             HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh---
Confidence            999988887751                           23456778899999999999999999999999876532   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccC--CCCCCcHHH------HH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR------VA  297 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~------~~  297 (634)
                       |.++++++|++.++|+.+||.+++++.++.||++.|++.++..+++++.++..++..+++  ++++++.+.      ..
T Consensus       148 -~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (500)
T PRK09584        148 -LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIV  226 (500)
T ss_pred             -hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHH
Confidence             667889999999999999999999999999999999998877666666555544433322  222222221      11


Q ss_pred             HHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHh
Q 006712          298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR  377 (634)
Q Consensus       298 ~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  377 (634)
                      .+.........          .....  +        . ..................       ..+.. +..++++++.
T Consensus       227 ~~~~~~~~~~~----------~~~~~--~--------~-~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~  277 (500)
T PRK09584        227 GVVALIAIATW----------LLHNQ--E--------I-ARMALGVVALGIVVIFGK-------EAFAM-KGAARRKMIV  277 (500)
T ss_pred             HHHHHHHHHHH----------HHhcc--h--------H-HHHHHHHHHHHHHHHHHH-------HHhhc-CHHHHHHHHH
Confidence            11111111100          00000  0        0 000000000000000000       00011 1235566666


Q ss_pred             HhhHHHHHHHHHHHHHhhhhHHHHHHh-hcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChh
Q 006712          378 LVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQL  456 (634)
Q Consensus       378 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~  456 (634)
                      .+.+++..+++|..+.|.++.+..++. ..++++.++.+++++++++|++.++++.|+.+++..|+.+|       .+..
T Consensus       278 ~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~  350 (500)
T PRK09584        278 AFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMP  350 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcH
Confidence            677778889999999999998777654 35666677888899999999999999999999877666665       5678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 006712          457 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK  536 (634)
Q Consensus       457 ~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r  536 (634)
                      +++.+|+++++++++.+......    ..+++         . ++.+|+++.+++.++||++.+|...+++.+.+|+++|
T Consensus       351 ~~~~~G~~l~~l~f~~l~~~~~~----~~~~~---------~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        351 HKFAIGMVLCSGAFLVLPLGAKF----ANDAG---------I-VSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----cCCCC---------c-cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHH
Confidence            89999999999999887665421    11111         2 5788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceec
Q 006712          537 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  613 (634)
Q Consensus       537 g~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~  613 (634)
                      |+++|++.+...+|+.++..+......-    .......    ....++..+|..+++++++..++.+...++.++.
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~----~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVANLMAVP----DNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988887643210    0000000    0112256778888877776666666666655543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=1.2e-30  Score=291.44  Aligned_cols=336  Identities=24%  Similarity=0.416  Sum_probs=276.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006712           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (634)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (634)
                      ++||++...+..|+++.+|++.+.+..+.+.|....++.++++|+++|+++||++++.++.++..+|.+++++++..+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999988875321111


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 006712          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (634)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~  242 (634)
                      .+                    .....+++++.+.++|.|+++|+..++.+|++++++.   +.|.++++++|+++|+|+
T Consensus        81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS  137 (654)
T TIGR00926        81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS  137 (654)
T ss_pred             cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence            11                    2345577888999999999999999999999986542   238999999999999999


Q ss_pred             HHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccc
Q 006712          243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE  315 (634)
Q Consensus       243 ~~~p~i~~~l~~~~-------gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~  315 (634)
                      .+++++.+++.+..       +|+.+|.+++++++++++++...++.++.+++.+++..+..++++.+.+++....++  
T Consensus       138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~--  215 (654)
T TIGR00926       138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE--  215 (654)
T ss_pred             HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc--
Confidence            99999999998543       699999999999999999999888888877788887777778877777654321100  


Q ss_pred             cccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhh
Q 006712          316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF  395 (634)
Q Consensus       316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~  395 (634)
                                            ....+|++.+...             ...+.++++|++++++++++..+++|..+.|.
T Consensus       216 ----------------------~~~~~~ld~a~~~-------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~  260 (654)
T TIGR00926       216 ----------------------HWPLHWLDYAKDK-------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ  260 (654)
T ss_pred             ----------------------ccchhHHHHhccc-------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                  0012344433221             11234678899999999999999999999999


Q ss_pred             hhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 006712          396 LTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGI  475 (634)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~  475 (634)
                      .+.+..|+..++.+++++.+++.+++.+|++.++++.|++++.+.|..+|...   .+++.+++++|+++++++++++..
T Consensus       261 ~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~  337 (654)
T TIGR00926       261 GSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAAL  337 (654)
T ss_pred             hhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888889999999999999999999999766666666432   378999999999999999999888


Q ss_pred             HHHHHH
Q 006712          476 FERYRR  481 (634)
Q Consensus       476 ~~~~~~  481 (634)
                      .+..+.
T Consensus       338 ve~~~~  343 (654)
T TIGR00926       338 VQLKVN  343 (654)
T ss_pred             HHHHHh
Confidence            776543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=3.4e-27  Score=266.80  Aligned_cols=176  Identities=14%  Similarity=0.054  Sum_probs=141.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      +|+.++.+.+..+...+-. .+...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++.
T Consensus       165 ~~~l~~i~~l~~~~~g~d~-~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~  242 (742)
T TIGR01299       165 QWALFFVLGLALMADGVEV-FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            4444444444444333333 3344556677889999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .++.++++++                            .+.+.++++|+++|++.|+..+...++++|.+|++.      
T Consensus       243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------  288 (742)
T TIGR01299       243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------  288 (742)
T ss_pred             HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence            9988888876                            578899999999999999999999999999999998      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHHHHHHH
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~-------------~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      |++.++++.....+|.++++.++.++...             .+||+.|++.++..++.+++.++
T Consensus       289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~  353 (742)
T TIGR01299       289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF  353 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877665432             36899888877766555544433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.95  E-value=8.4e-25  Score=234.48  Aligned_cols=375  Identities=13%  Similarity=0.066  Sum_probs=251.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      ++|..++.+.+..++.....+...+. ...+.+++|.|.++.++..+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   83 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGL-LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL   83 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcc-hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            45655666666666654444433333 3567889999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.+.+.++                            .+.+.++++|+++|++.+...+...+++.|++|+++     
T Consensus        84 ~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~-----  130 (390)
T PRK03545         84 FIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK-----  130 (390)
T ss_pred             HHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence            99998888886                            678899999999999999999999999999999988     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHh
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~  305 (634)
                       |++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..+...++.+++  ++++.++          
T Consensus       131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~----------  197 (390)
T PRK03545        131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS----------  197 (390)
T ss_pred             -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH----------
Confidence             999999999999999999999999999889999999998876655544433322221100  0000000          


Q ss_pred             hhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhH-hhHHHH
Q 006712          306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL-VPIPAC  384 (634)
Q Consensus       306 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-l~~~~~  384 (634)
                                                              ..                    +....+.+... ...+..
T Consensus       198 ----------------------------------------~~--------------------~~~~~~~~~~~~~~~~~~  217 (390)
T PRK03545        198 ----------------------------------------LP--------------------LLFRRPALVSLYLLTVVV  217 (390)
T ss_pred             ----------------------------------------HH--------------------HHHhCcHHHHHHHHHHHH
Confidence                                                    00                    00000111111 111111


Q ss_pred             HHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHH
Q 006712          385 TIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA  464 (634)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~  464 (634)
                      ....+........ +.....+.+..      ..+.+.....+..++...+.+++.||..+|            .+..+..
T Consensus       218 ~~~~~~~~~~~~~-~l~~~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~  278 (390)
T PRK03545        218 VTAHFTAYSYIEP-FVQQVAGLSEN------FATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIA  278 (390)
T ss_pred             HHHHHHHHHHHHH-HHHHhcCCCcc------HHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHH
Confidence            1111212111111 11111122211      122333344455566666677766665433            2444555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 006712          465 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA  544 (634)
Q Consensus       465 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  544 (634)
                      +..+++.......                      .+.+.+++..++.|++.+...+.....+.+..| +.|++++|+++
T Consensus       279 ~~~~~~~~l~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~  335 (390)
T PRK03545        279 LLLVCLLLLLPAA----------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFS  335 (390)
T ss_pred             HHHHHHHHHHHHh----------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            4444443332221                      134555566777788888777888888888877 58899999999


Q ss_pred             HHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 006712          545 LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  608 (634)
Q Consensus       545 ~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~  608 (634)
                      ...++|..+|+.+.+.+.+..+                  +...|+..+++.++++++.++..+
T Consensus       336 ~~~~~g~~~G~~~~G~~~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        336 GIFNIGIGAGALLGNQVSLHLG------------------LSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhccC------------------hhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999998876433                  346688888888887777766553

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=1.4e-24  Score=233.49  Aligned_cols=377  Identities=12%  Similarity=0.023  Sum_probs=254.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      .++.+..+....++..++.....+.++.|+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||+++++.++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            445577788888888888888888899999999999999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .++.+.+.++...... +                   ..+...+++.|+++|++.+...+...+++.|.+|+++      
T Consensus        92 ~~~~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------  145 (399)
T PRK05122         92 ALSGLLYLLAGLLAAW-P-------------------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------  145 (399)
T ss_pred             HHHHHHHHHhhhhhcc-c-------------------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------
Confidence            8877766654211000 0                   0256688999999999999999999999999999998      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      |++.++++..+.++|..++|.+++++.+..||++.+++..+..++.++.   ..+. +..++++++              
T Consensus       146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~--------------  207 (399)
T PRK05122        146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARPR-PAVPPVKGE--------------  207 (399)
T ss_pred             hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---HhcC-CCCCCCCcc--------------
Confidence            9999999999999999999999999999899999887765543332221   1110 000000000              


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhH-hhHHHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL-VPIPACT  385 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-l~~~~~~  385 (634)
                                                       +.++.                         +..|..... ....+..
T Consensus       208 ---------------------------------~~~~~-------------------------~~~~~~~~~~~~~~~~~  229 (399)
T PRK05122        208 ---------------------------------RLPFR-------------------------RVLGRVWPYGMGLALAS  229 (399)
T ss_pred             ---------------------------------chhHH-------------------------HHHHHHHHHHHHHHHHH
Confidence                                             00000                         000111100 0011111


Q ss_pred             HHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHH
Q 006712          386 IMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAV  465 (634)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l  465 (634)
                      ..+....... ..+..+ .+.+        ..+.......+..++..++.+++.||+.+|           +.+..+.++
T Consensus       230 ~~~~~~~~~~-~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~  288 (399)
T PRK05122        230 IGFGTIATFI-TLYYAA-RGWD--------GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLV  288 (399)
T ss_pred             HHHHHHHHHH-HHHHHH-cccc--------cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHH
Confidence            1111111111 111111 1110        112222334444555667777777776554           235566666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 006712          466 SILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL  545 (634)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  545 (634)
                      .+++++......                       +.+.+++..++.|++.+...+.......+..|++.||+++|+++.
T Consensus       289 ~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  345 (399)
T PRK05122        289 EILGLLLLWLAP-----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSV  345 (399)
T ss_pred             HHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            666655444321                       334455667788999988888888888899999999999999999


Q ss_pred             HhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 006712          546 AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  608 (634)
Q Consensus       546 ~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~  608 (634)
                      ...+|..+++.+.+.+.+..+                  ++..|++.+++.+++++..+++.+
T Consensus       346 ~~~~g~~~~~~~~g~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        346 FLDLSLGITGPLAGLVASWFG------------------YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC------------------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999988887765322                  356777777777777666555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=1e-25  Score=249.52  Aligned_cols=450  Identities=11%  Similarity=0.003  Sum_probs=247.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~  140 (634)
                      .+++.+.++.+..+...+-...+....+ .+..+     .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~   90 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYG   90 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHH
Confidence            4455555555555655555433333333 33332     234566778999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCC
Q 006712          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (634)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~  220 (634)
                      ++++++.++.++++++..   ..+                   ..+...++++|+++|++.|+..+..+.+++|.+|++.
T Consensus        91 ~~~~~~~v~~~~~~~~~~---~~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~  148 (502)
T TIGR00887        91 MELIIMIIATVASGLSPG---SSP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW  148 (502)
T ss_pred             HHHHHHHHHHHHHHHccC---ccc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh
Confidence            999999999888777511   000                   0236789999999999999999999999999999999


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----------------------ccchHHHHHHHHHHHHHHHHHHH
Q 006712          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~-----------------------~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                            |+++.++++....+|..+++.++.++..                       ..+||+.|.+.++..++.++..+
T Consensus       149 ------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~  222 (502)
T TIGR00887       149 ------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRL  222 (502)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHH
Confidence                  9999999999999999999888765432                       24799999877766554444332


Q ss_pred             HhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCcc-ccCCCcccccCCcchHH-HHHHhhhcccc
Q 006712          278 IGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS-AIKGSGKIAHTDDFRCL-DKAALELKEDV  355 (634)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~a~~~~~~~~  355 (634)
                      .                                .||+|+| +.+++++++ +.+...+..+.+..+.. +..+..... +
T Consensus       223 ~--------------------------------lpESpr~-l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~  268 (502)
T TIGR00887       223 T--------------------------------IPETPRY-TADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAV-E  268 (502)
T ss_pred             h--------------------------------CCCCHHH-HHHhCcchHHHHHHHHHHhccccccCcccccchhccc-c
Confidence            2                                3444444 332222211 11000000000000000 000000000 0


Q ss_pred             CCCCCCccccchh--hhHHHHHHhHhhHHHHH-HHHHHHHHhhhhHHHHHHhhcccCCCCcc-c-----cCccccchhHH
Q 006712          356 INPSPWKLCTVTQ--VEEVKTLVRLVPIPACT-IMLNVILTEFLTLSVQQAYTMNTHMGKLK-L-----PVTCMPVFPGL  426 (634)
Q Consensus       356 ~~~~~~~~~~~~~--~~~~k~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~  426 (634)
                      ....+|+++....  ...+++++.....++.. +.++....+.+ .+. +..+++....+.. .     .......+..+
T Consensus       269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p-~i~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (502)
T TIGR00887       269 VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQK-VIL-SAIGYSPPAATNNAYEELYKTAVGNLIIALA  346 (502)
T ss_pred             chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccH-HHH-HHHcCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence            0001232221110  01111111111111111 11111111111 222 2223322100000 0     00001112222


Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHH
Q 006712          427 SIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLL  506 (634)
Q Consensus       427 ~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv  506 (634)
                      ..++...+..++.||++||..           +.++.+++++++++.+......                 +  +...++
T Consensus       347 ~~i~g~~~~~~l~dr~gRR~~-----------l~~~~~~~~~~~~~l~~~~~~~-----------------~--~~~~~~  396 (502)
T TIGR00887       347 GTVPGYWVTVFLVDIIGRKPI-----------QLMGFFILTVLFFVLGFAYNHL-----------------S--THGFLA  396 (502)
T ss_pred             HHHHHHHHHHHHhhhhcchhH-----------HHHHHHHHHHHHHHHHHHHHhc-----------------c--hhHHHH
Confidence            334455667788899888732           4556666666655544332110                 0  111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhh
Q 006712          507 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD  586 (634)
Q Consensus       507 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~  586 (634)
                      ...++..++.....+..+.+..|.+|++.|+++.|+.+..+++++++++.+.+.+.+..+  .  ..++ .   ...++.
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~--~~~~-~---~~~~~~  468 (502)
T TIGR00887       397 IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGD--P--TKGY-P---TGIWMG  468 (502)
T ss_pred             HHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccc--c--cccc-c---ccccch
Confidence            111111222222345667788999999999999999999999999999999997765221  0  0000 0   001123


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccceeccccCCCC
Q 006712          587 YLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGN  620 (634)
Q Consensus       587 ~~f~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~  620 (634)
                      ..|++++++++++.+++ ++.+++++++.||+++
T Consensus       469 ~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       469 HVLEIFALFMFLGILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence            56777777777766544 5668888887766543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.95  E-value=7.1e-25  Score=242.30  Aligned_cols=402  Identities=13%  Similarity=0.029  Sum_probs=255.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      +|..+..+.+..++..+-...+...+| .+.+++|.+.++.+|+.+.|.++..++.+++|+++||+ |||++++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            466677777777777777766665555 45678999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccC-CCCCcchhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKT  225 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~-~~~~~~~~~  225 (634)
                      .++.++++++                            .+.+.++++|+++|+|.++..+.....+.+.+ |+++     
T Consensus        82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~-----  128 (495)
T PRK14995         82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ-----  128 (495)
T ss_pred             HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence            9999999987                            67899999999999999999988888887877 4566     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHH-HHHH---H--
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT-RVAQ---V--  299 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~---v--  299 (634)
                       |+++++++....++|..+||.+++++.++.||||.|++...+.++.+++.....++.+.++.++.+.. .+..   .  
T Consensus       129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~  207 (495)
T PRK14995        129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILL  207 (495)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHH
Confidence             99999999999999999999999999999999999999877766665555444443322211111111 1100   0  


Q ss_pred             HHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHh
Q 006712          300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV  379 (634)
Q Consensus       300 ~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l  379 (634)
                      +.....+..    . ..+             ........--............+. ....|....   +.-..+.+....
T Consensus       208 l~~~~~~~~----~-~~~-------------~~~~~~~~~~~~~~~l~~f~~~e~-~~~~p~~~~---~lf~~~~~~~~~  265 (495)
T PRK14995        208 LVYSAKTAL----K-GFL-------------SLWVTSLTLLTGALLLGLFIRTQL-AASRPMIDM---RLFTHRIILSGV  265 (495)
T ss_pred             HHHHHHhcc----c-cCC-------------chHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcCH---HHhCCcccHHHH
Confidence            011111000    0 000             000000000000000000000000 011121110   000011111111


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHH
Q 006712          380 PIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV  459 (634)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i  459 (634)
                      ...++..........+...+.+...+.+.      ...+.+.....+...+..++.+++.||+++|           +.+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~------~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~  328 (495)
T PRK14995        266 VMAMTAMITLVGFELLMAQELQFVHGLSP------LEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVA  328 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHH
Confidence            11111111111111122223232223221      1233344445566677788888888877655           236


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 006712          460 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG  539 (634)
Q Consensus       460 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~  539 (634)
                      ..|+++.+++++.+......                    .+.+......++.|+|.++..++....+.+.+|++.++.+
T Consensus       329 ~~g~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~  388 (495)
T PRK14995        329 TGGMALSALSFYGLAMTDFS--------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAA  388 (495)
T ss_pred             HHHHHHHHHHHHHHHHhcCC--------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchH
Confidence            67777777776554433210                    2344455667888999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhhc
Q 006712          540 SAYAALAGGLGCFAASILNSIIKS  563 (634)
Q Consensus       540 ~g~~~~~~~ig~~lg~~l~~~v~~  563 (634)
                      ++++++.+++|+.+|+.+.+.+..
T Consensus       389 ~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        389 GAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997754

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=1.8e-24  Score=233.01  Aligned_cols=359  Identities=16%  Similarity=0.080  Sum_probs=241.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +++|..+....+..+++.+..+...... ..+.+++|.+.++.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            4678778888888888877776655554 456678999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+++.++                            .+.+.+++.|++.|++.+...+...+++.|.+|+++    
T Consensus        89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  136 (406)
T PRK11551         89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL----  136 (406)
T ss_pred             HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence            888887777765                            567888999999999999999999999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF  304 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~  304 (634)
                        |++.+++++.+.++|..++|.+++.+.+..+|++.|++.+++.++..+......++.+...+++..            
T Consensus       137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------  202 (406)
T PRK11551        137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA------------  202 (406)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc------------
Confidence              999999999999999999999998888888999999887765444444333322221100000000            


Q ss_pred             hhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh-HHH
Q 006712          305 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPA  383 (634)
Q Consensus       305 ~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~-~~~  383 (634)
                                          .            .+.....+.                 ..+ + ...+....... .+.
T Consensus       203 --------------------~------------~~~~~~~~~-----------------~~~-~-~~~~~~~~~~~~~~~  231 (406)
T PRK11551        203 --------------------G------------KQRAPVLRA-----------------LFG-E-GRATATLLLWISYFF  231 (406)
T ss_pred             --------------------c------------hhhhhhHHH-----------------Hhh-h-hhhhHHHHHHHHHHH
Confidence                                0            000000000                 000 0 00111111111 111


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHH
Q 006712          384 CTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL  463 (634)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~  463 (634)
                      ....++....+.+ .+. +..+.+.      ...+.......+..++...+.+++.||+++|.           .+.++.
T Consensus       232 ~~~~~~~~~~~~p-~~~-~~~g~s~------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~  292 (406)
T PRK11551        232 TLIVLYFLLNWLP-SLL-VGQGLSR------SQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-----------VVLLIY  292 (406)
T ss_pred             HHHHHHHHHHHHH-HHH-HhCCCCh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHH
Confidence            1111222211111 111 1112211      12334444455666777788888888877662           133344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 006712          464 AVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA  543 (634)
Q Consensus       464 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  543 (634)
                      +..++++..+....                       +.+.+....++.+++.....+...++..+.+|++.|++++|+.
T Consensus       293 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  349 (406)
T PRK11551        293 AGILASLAALAAAP-----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAA  349 (406)
T ss_pred             HHHHHHHHHHHhcC-----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHH
Confidence            44444433332211                       3344445556677777777888899999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhcc
Q 006712          544 ALAGGLGCFAASILNSIIKSV  564 (634)
Q Consensus       544 ~~~~~ig~~lg~~l~~~v~~~  564 (634)
                      +....+|..+++.+.+.+.+.
T Consensus       350 ~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        350 VAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             HHhhhHHHHHHhhhHhhhhcc
Confidence            999999999999999987653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=1.7e-25  Score=246.34  Aligned_cols=438  Identities=14%  Similarity=0.112  Sum_probs=250.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT  138 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--------~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~  138 (634)
                      +.+.++...+..+...+....+... ...+++.+        +.+..+.+++.+.+.++..++++++|+++||+ |||++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~   87 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGT-VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS   87 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHh-HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence            4455555555555544443322222 23345555        88999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC
Q 006712          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (634)
Q Consensus       139 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (634)
                      ++++.+++.++.+.++++........                .++......++++|+++|++.|+..+...++++|++|+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~  151 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIG----------------PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA  151 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccc----------------ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh
Confidence            99999999888877776321000000                01113467788999999999999999999999999999


Q ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 006712          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG  290 (634)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~  290 (634)
                      ++      |++.++++..+..+|..+++.++..+.        +..|||+.|++.++..++..+..++ .++.++.....
T Consensus       152 ~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~-l~~s~~~l~~~  224 (479)
T PRK10077        152 HI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF-VPETPRYLMSR  224 (479)
T ss_pred             hh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHc
Confidence            98      999999999999999999987766543        3568999999877666555444333 22211100000


Q ss_pred             CcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhh
Q 006712          291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE  370 (634)
Q Consensus       291 ~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  370 (634)
                      +..++..+..    + +           ...               ..+..+..+........              +.+
T Consensus       225 ~~~~~~~~~~----~-~-----------~~~---------------~~~~~~~~~~~~~~~~~--------------~~~  259 (479)
T PRK10077        225 GKQEQAEGIL----R-K-----------IMG---------------NTLATQALQEIKHSLDH--------------GRK  259 (479)
T ss_pred             CCHHHHHHHH----H-H-----------HcC---------------ChhHHHHHHHHHHHHHH--------------hhh
Confidence            0000000000    0 0           000               00000000000000000              000


Q ss_pred             HHHHHHhHhhHHHHHHHHHHHHHhhhh--------HHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhh
Q 006712          371 EVKTLVRLVPIPACTIMLNVILTEFLT--------LSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPL  442 (634)
Q Consensus       371 ~~k~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l  442 (634)
                      ..+..+......+........+.+...        ....+..+++..      ..........+..++..++.+++.||+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~------~~~~~~~~~~~~~~i~~~~~g~l~dr~  333 (479)
T PRK10077        260 TGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTD------IALLQTIIVGVINLTFTVLAIMTVDKF  333 (479)
T ss_pred             hhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000000000000000000011111110        011111111111      122233334555667777888888888


Q ss_pred             hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHH-HHH
Q 006712          443 CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF-CIV  521 (634)
Q Consensus       443 ~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~-~~~  521 (634)
                      +||.           .+..|.++++++++.+......                  . ....+.+...++.+.+... ..|
T Consensus       334 g~r~-----------~~i~~~~~~~v~~~~l~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~  383 (479)
T PRK10077        334 GRKP-----------LQIIGALGMAIGMFSLGTAFYT------------------Q-APGIVALLSMLFYVAAFAMSWGP  383 (479)
T ss_pred             cChH-----------HHHHhHHHHHHHHHHHHHHHhc------------------C-cccHHHHHHHHHHHHHHhccccc
Confidence            7763           3677777777777666543211                  0 1222333333444444443 336


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHH
Q 006712          522 GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC  601 (634)
Q Consensus       522 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~  601 (634)
                      ..+.++.+.+|++.|++++|+.+...++++.+++.+.+.+..         .+|+.++   .+....|++.+++++++++
T Consensus       384 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~  451 (479)
T PRK10077        384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK---------NSWLVAH---FHNGFSYWIYGCMGVLAAL  451 (479)
T ss_pred             hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh---------ccchhhh---ccCccHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999988876542         1121111   1112456777777777777


Q ss_pred             HHHHhhccceeccccCCCCch
Q 006712          602 AFLYSAYRYKYRSEQKHGNDY  622 (634)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~  622 (634)
                      +.+++.+++|+++.||.++.+
T Consensus       452 ~~~~~~~e~~~~~~~~~~~~~  472 (479)
T PRK10077        452 FMWKFVPETKGKTLEEMEALW  472 (479)
T ss_pred             HHHhccccCCCCCHHHHHHHH
Confidence            777777777776655444333

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=6.2e-24  Score=227.86  Aligned_cols=372  Identities=12%  Similarity=0.025  Sum_probs=247.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .++.+.+..++..++.....+.++.|+.+++|.|.++.+++.+.+.++..++.++.|+++||+ ||||+++++.++..++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA   94 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence            456666667777777777778888899999999999999999999999999999999999998 9999999998877766


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+...+....+.. .                   ..+...++++|+++|++.+...+...+++.|.+|+++      |++
T Consensus        95 ~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (392)
T PRK12382         95 GLAYLLAAILPVS-A-------------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK  148 (392)
T ss_pred             HHHHHhhhccccc-h-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence            5443332111100 0                   0467889999999999999988989999999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~  309 (634)
                      +++++..+.++|..++|.+++++.+..||++.+.+..+..++.+   ...+ +.++.+++++.                 
T Consensus       149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~-----------------  207 (392)
T PRK12382        149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNG-TVRKVPAHAGE-----------------  207 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHH-hccCCCCCccc-----------------
Confidence            99999999999999999999999888999987665544322222   1111 11110000000                 


Q ss_pred             cccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHh-HhhHHHHHHHH
Q 006712          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVR-LVPIPACTIML  388 (634)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~l~~~~~~~~~  388 (634)
                                                    +.+..                         +..|.+.. .+...+....+
T Consensus       208 ------------------------------~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~  232 (392)
T PRK12382        208 ------------------------------RPSLW-------------------------SVVGLIWKPGLGLALQGVGF  232 (392)
T ss_pred             ------------------------------CchHH-------------------------HHHHHHHHhHHHHHHHHHHH
Confidence                                          00000                         00000000 00111111111


Q ss_pred             HHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHH
Q 006712          389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSIL  468 (634)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~  468 (634)
                      ....... ..+..+     .+.   . ..+.......+..++..++.+++.||+.+|+.           +..+.++.++
T Consensus       233 ~~~~~~~-~~~~~~-----~~~---~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-----------~~~~~~~~~~  291 (392)
T PRK12382        233 AVIGTFV-SLYFAS-----KGW---A-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-----------AIVSLLVETV  291 (392)
T ss_pred             hHHHHHH-HHHHHh-----cCC---c-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-----------hHHHHHHHHH
Confidence            1111111 111111     110   1 11222223444456667778888887776632           5556666666


Q ss_pred             HHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhH
Q 006712          469 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG  548 (634)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  548 (634)
                      +++......                       +.++..+..++.+++.+...+.......+.+|++.||++.|+++....
T Consensus       292 ~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  348 (392)
T PRK12382        292 GLLLLWLAP-----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQD  348 (392)
T ss_pred             HHHHHHHcc-----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            655443321                       334455567778889888888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 006712          549 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS  606 (634)
Q Consensus       549 ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~  606 (634)
                      +|+.+++.+.+.+.+..+        |          ...|.+.+++.+++.++.++.
T Consensus       349 ~g~~ig~~~~g~l~~~~g--------~----------~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        349 IAYGVSGPLAGMLATSFG--------Y----------PSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHHHhC--------c----------hHHHHHHHHHHHHHHHHHHhh
Confidence            999999999998876432        3          466777777777776665544

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=5.4e-24  Score=234.03  Aligned_cols=401  Identities=11%  Similarity=0.008  Sum_probs=248.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      .+.++.+.+..++..+..+.+.+.++.+.. ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            345777888888888888888887777664 6999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++.+++.++                            .+.+.++++|+++|++.+...+...+++.|.+|+++      |
T Consensus        87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~  132 (471)
T PRK10504         87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y  132 (471)
T ss_pred             HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence            888777665                            567888999999999999999999999999999888      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHH-HHHHHHhh
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ-VLVAAFRK  306 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~a~~~  306 (634)
                      ++.+++++...++|..++|.+++++.+..||++.|++......+..+......++.+.++.. ........ ........
T Consensus       133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~  211 (471)
T PRK10504        133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRR-FDLSGFLLLAVGMATLT  211 (471)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998776665555554444332222111 11111100 00000000


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcc-hHHH-----HHHhhhccccCCCCCCccccchhhhHHHHHHhHhh
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDF-RCLD-----KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP  380 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~  380 (634)
                      ...  .+.+.             ..   . ..... ....     .......+. ....+..   ..+....|.+...+.
T Consensus       212 ~~~--~~~~~-------------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~~~~~~~~~l~  268 (471)
T PRK10504        212 LAL--DGSKG-------------LG---L-SPLAIAGLVAVGVVALLLYLLHAR-NNNRALF---SLKLFRTRTFSLGLA  268 (471)
T ss_pred             HHH--hcCCc-------------CC---c-chHHHHHHHHHHHHHHHHHHHHHh-cCCCCcc---CHHHhcccchHHHHH
Confidence            000  00000             00   0 00000 0000     000000000 0001100   000111122222211


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHH
Q 006712          381 IPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG  460 (634)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~  460 (634)
                      ..++.............++.++..+.+.      ...+.+.....+..++..++.+++.||+++|.           .+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~-----------~~~  331 (471)
T PRK10504        269 GSFAGRIGSGMLPFMTPVFLQIGLGFSP------FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR-----------VLV  331 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----------HHH
Confidence            1111111111122222233322222211      11222223333444455567777777776652           355


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 006712          461 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS  540 (634)
Q Consensus       461 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~  540 (634)
                      .|.++.+++..++.....                   . .+.+++...+++.|++.++..+..+....+.+|++.++.++
T Consensus       332 ~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  391 (471)
T PRK10504        332 ATTLGLALVSLLFMLVAL-------------------L-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGN  391 (471)
T ss_pred             HHHHHHHHHHHHHHhccc-------------------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchH
Confidence            566656555444433210                   0 12333344566778899999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhccc
Q 006712          541 AYAALAGGLGCFAASILNSIIKSVT  565 (634)
Q Consensus       541 g~~~~~~~ig~~lg~~l~~~v~~~~  565 (634)
                      |++++.+.+|..+|+.+.+.+.+..
T Consensus       392 ~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        392 SLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999876643

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=1.3e-23  Score=231.90  Aligned_cols=175  Identities=18%  Similarity=0.133  Sum_probs=131.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-HHH-----HHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-~~~-----~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~  141 (634)
                      ++.++...+..+++.+-+. +..+...++.++++.+.+. ..+     +.+++.++..++.+++|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            4556666677777776664 4556677888888644322 122     24667788889999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCc
Q 006712          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (634)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~  221 (634)
                      +++++.++.++++++..+..+..                    .....++++|+++|++.|+..+...++++|.+|+++ 
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g~--------------------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIGI--------------------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHH--------------------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence            99999999999988721100000                    011248899999999999999999999999999998 


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHH
Q 006712          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG  270 (634)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~--------~~~gw~~~f~~~~~~~~  270 (634)
                           |++..++...+..+|..+|+.+...+.        ..+|||+.|++.++..+
T Consensus       152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence                 999999988888888888876654432        25799999998765443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=6.1e-24  Score=229.92  Aligned_cols=391  Identities=15%  Similarity=0.047  Sum_probs=245.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 006712           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~  153 (634)
                      +....++..++.......++.+. ++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence            33445555566544455555554 56778999999999999999999999999999998 99999999888777766655


Q ss_pred             HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH
Q 006712          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (634)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  233 (634)
                      ......    ..                   .+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++
T Consensus       100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (417)
T PRK10489        100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI  150 (417)
T ss_pred             HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence            432110    00                   456778889999999998888999999999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCC-CCCCcHHHHHHHHHHHHhhhccccc
Q 006712          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTRVAQVLVAAFRKRHAAFS  312 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~a~~~~~~~~p  312 (634)
                      .+...++|..+||.+++++.+..+|++.|++.++..++..+..+.. ++.+.++ +..++..                  
T Consensus       151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~------------------  211 (417)
T PRK10489        151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALPPPPQPREHPLR------------------  211 (417)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCCcccccchH------------------
Confidence            9999999999999999999888899999988776655554443322 2111000 0000000                  


Q ss_pred             ccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHH
Q 006712          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL  392 (634)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~  392 (634)
                                                   +..+....                   ....+.+........+........
T Consensus       212 -----------------------------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~  243 (417)
T PRK10489        212 -----------------------------SLLAGFRF-------------------LLASPVVGGIALLGGLLTMASAVR  243 (417)
T ss_pred             -----------------------------HHHHHHHH-------------------HHcChHHHHHHHHHHHHHHHHhHH
Confidence                                         00000000                   000011111111111111111111


Q ss_pred             HhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 006712          393 TEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIW  472 (634)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~  472 (634)
                      .. ...+..+..+.+.      ...+.+.....+..++...+.+++.|+..           +.+.+..+.++.+++++.
T Consensus       244 ~~-~p~~~~~~~g~~~------~~~g~~~~~~~~g~~ig~~~~~~l~~~~~-----------~~~~l~~~~~~~~~~~~~  305 (417)
T PRK10489        244 VL-YPALADEVWQMGA------AQIGLLYAAVPLGAALGALTSGWLAHSAR-----------PGLLMLLSTLGSFLAVGL  305 (417)
T ss_pred             Hh-hHHHHHhccCCCh------hHhHHHHHHHHHHHHHHHHHHHHhhhccC-----------cchHHHHHHHHHHHHHHH
Confidence            11 1112221112111      11223333344444455555555444311           122355666666666554


Q ss_pred             HHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHH
Q 006712          473 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF  552 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  552 (634)
                      +....                       +.+......++.|++.+...+...++..+..|++.||+++|+++....+|..
T Consensus       306 ~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  362 (417)
T PRK10489        306 FGLMP-----------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDA  362 (417)
T ss_pred             HHccc-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHh
Confidence            43221                       3444555667778888888888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceeccccCCCCc
Q 006712          553 AASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND  621 (634)
Q Consensus       553 lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~  621 (634)
                      +|+.+.+.+.+..+                  ....++..+++.++..++.+...+++|++++||+++|
T Consensus       363 ~g~~l~G~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        363 IGAALLGGLGAMMT------------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHHHHHHHHHHHhc------------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            99999998876433                  1245666666666666666666677777776665543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=1.5e-23  Score=225.37  Aligned_cols=348  Identities=14%  Similarity=0.128  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~  151 (634)
                      ++++...++..++.+.+.+.++.|+++++|+|..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            6667888899999999999999999999999999999999999999999999999999998 999999999999999888


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      .+.+.                            .+.+.+++.|+++|++.+...|...+++.|.+|+++      |++++
T Consensus        92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~  137 (400)
T PRK11646         92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF  137 (400)
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence            88765                            567888999999999999889999999999999988      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccc
Q 006712          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAF  311 (634)
Q Consensus       232 ~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~  311 (634)
                      ++++...++|..+||.+++++. .++|++.|++.+...++..++.....++.+.+ +..++                   
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~-------------------  196 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTP-------------------  196 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchh-------------------
Confidence            9999999999999999999998 67999999987766555444333322211000 00000                   


Q ss_pred             cccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHH
Q 006712          312 SSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVI  391 (634)
Q Consensus       312 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~  391 (634)
                                                     ..+.              ++.    -.++++ +......   ...++..
T Consensus       197 -------------------------------~~~~--------------~~~----~~~~~~-~~~~~~~---~~~~~~~  223 (400)
T PRK11646        197 -------------------------------VREG--------------MTR----VLRDKR-FVTYVLT---LTGYYML  223 (400)
T ss_pred             -------------------------------hHHH--------------HHH----HHcCch-HHHHHHH---HHHHHHH
Confidence                                           0000              000    000111 1111111   1111111


Q ss_pred             HHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHH
Q 006712          392 LTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVI  471 (634)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~  471 (634)
                      ..+....++.+...  ..  +.....+.+..+..+.........+++.|+   |       ....+.+..+.++.++++.
T Consensus       224 ~~~~~~~~p~~~~~--~~--~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~---r-------~~~~~~~~~~~~~~~~~~~  289 (400)
T PRK11646        224 AVQVMLMLPIMVND--IA--GSPSAVKWMYAIEACLSLTLLYPIARWSEK---R-------FRLEHRLMAGLLIMSLSMF  289 (400)
T ss_pred             HHHHHHhhhhhHHh--hc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHH---h-------cchhHHHHHHHHHHHHHHH
Confidence            11211111111111  00  001112222222333222222222333322   2       1222345666666666665


Q ss_pred             HHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHH
Q 006712          472 WAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGC  551 (634)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~  551 (634)
                      .++...                       +.++++...++.+++++...|...+.+.+.+|++.||+++|+.++...+|.
T Consensus       290 ~l~~~~-----------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  346 (400)
T PRK11646        290 PIGMVS-----------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGG  346 (400)
T ss_pred             HHHHhh-----------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHH
Confidence            554332                       233444455677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc
Q 006712          552 FAASILNSIIKSVT  565 (634)
Q Consensus       552 ~lg~~l~~~v~~~~  565 (634)
                      .+|+.+.+.+.+.+
T Consensus       347 ~ig~~l~G~l~~~~  360 (400)
T PRK11646        347 AIGYIGGGWLFDLG  360 (400)
T ss_pred             HhcccchHHHHHHH
Confidence            99999999987754

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=1.3e-23  Score=228.38  Aligned_cols=169  Identities=11%  Similarity=0.041  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      +..+..++..++..+..+.+...++. +.+++|+|.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~  100 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence            33444444555555544455555554 4567999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +.+++.++                            .+.+.+++.|++.|++.|...+...+++.|++|+++      |+
T Consensus       101 ~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg  146 (434)
T PRK11663        101 INILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG  146 (434)
T ss_pred             HHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence            88888776                            577888899999999999989999999999999988      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~  273 (634)
                      +.+++++.+.++|..++|.+++++.+.+|||+.|++.++..++..
T Consensus       147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998999999988776544443

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=5.2e-24  Score=228.58  Aligned_cols=356  Identities=12%  Similarity=0.071  Sum_probs=237.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      .+|+++.+.+..++..++.+.+.++++.|+++++|+|..+++++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHH
Confidence            445678888889999999999999999999999999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .++.+++.++                            ++.+.+++++.+.|.+.+...++..++.+|.+|+++      
T Consensus        84 ~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------  129 (395)
T PRK10054         84 ASGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------  129 (395)
T ss_pred             HHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------
Confidence            8887777765                            566777778888888888888899999999999888      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      |++.+++.+...++|..++|.+++++.+ .+|+..|++.+++.++.++......++.+  ++++++...           
T Consensus       130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~-----------  195 (395)
T PRK10054        130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE--KAIATETGS-----------  195 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc--cccccchhh-----------
Confidence            9999999999999999999999998875 78999999887776665544333222111  000000000           


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHh-hHHHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV-PIPACT  385 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l-~~~~~~  385 (634)
                               .+                           +.     .               +....|.+.... ..++..
T Consensus       196 ---------~~---------------------------~~-----~---------------~~~~~~~~~~~~~~~~l~~  219 (395)
T PRK10054        196 ---------VW---------------------------SP-----S---------------VLLQDKALLWFTCSGFLAS  219 (395)
T ss_pred             ---------hh---------------------------hh-----h---------------hhccCceehHHHHHHHHHH
Confidence                     00                           00     0               000001111111 111111


Q ss_pred             HHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHH
Q 006712          386 IMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAV  465 (634)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l  465 (634)
                      .......... ..+.....  +....  ....+.+..++.+......+..+++.|+..+|           ..+.+|+++
T Consensus       220 ~~~~~~~~~~-~~~~~~~~--~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~l~~~~~~  283 (395)
T PRK10054        220 FVSGAFASCI-SQYVMVVA--DSDFA--EKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR-----------PLMTAGTLC  283 (395)
T ss_pred             HHHHHhhhhH-HHHHHHhc--ccchH--HHHHHHHHHhhhhheeeehhHHHHHHccCCch-----------hHHHHHHHH
Confidence            1111111111 11111111  11100  00112222333333334444445555444333           346677766


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 006712          466 SILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL  545 (634)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  545 (634)
                      .++++..+....                      .+.+.+.+..++.++|+....|...+.+.+.+|++.++.+.+..+ 
T Consensus       284 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-  340 (395)
T PRK10054        284 FVIGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-  340 (395)
T ss_pred             HHHHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-
Confidence            666665544321                      133434456678899999999999999999999999999998766 


Q ss_pred             HhHHHHHHHHHHHHHhhcccC
Q 006712          546 AGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       546 ~~~ig~~lg~~l~~~v~~~~~  566 (634)
                      ..++|..+|+.+.+.+.+..+
T Consensus       341 ~~~~G~~~Gp~~~G~l~~~~g  361 (395)
T PRK10054        341 LGWLGAAINPLVSGVILTTLP  361 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            567999999999999887543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=5.5e-23  Score=212.93  Aligned_cols=378  Identities=15%  Similarity=0.119  Sum_probs=264.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +..|..++.+.+..|.....-+.... +.+-+.+++|.|..++|+.++.|..+..++.|+...++||+ .||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~g-LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVG-LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHh-chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            34566778888888877777765554 45568899999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +++++.++++++                            +|+..+.++|++.|+..|.+++...++.+++.|+++    
T Consensus        87 lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~----  134 (394)
T COG2814          87 LFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK----  134 (394)
T ss_pred             HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----
Confidence            999999999998                            789999999999999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCC--CCCcHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP--GGSPLTRVAQVLVA  302 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~  302 (634)
                        |++++++...+..++..+|..++.++.+.+|||..|++..+..++.++..+...|  +.+.+  .+.++.+..++   
T Consensus       135 --~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~~~---  207 (394)
T COG2814         135 --RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLLRL---  207 (394)
T ss_pred             --hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHHHH---
Confidence              9999999999999999999999999999999999999988887777777666555  11100  00000000000   


Q ss_pred             HHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHH
Q 006712          303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP  382 (634)
Q Consensus       303 a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~  382 (634)
                                                                                   +     ++.+.....+..+
T Consensus       208 -------------------------------------------------------------l-----~~p~v~~~l~~t~  221 (394)
T COG2814         208 -------------------------------------------------------------L-----RRPGVLLGLLATF  221 (394)
T ss_pred             -------------------------------------------------------------h-----cCchHHHHHHHHH
Confidence                                                                         0     0001111122222


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHH
Q 006712          383 ACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIG  462 (634)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G  462 (634)
                      +.....+..|++...++ .+..+++..      ..++......+..++...+.+++.||..++            .+...
T Consensus       222 l~~~g~F~~ftYi~P~L-~~v~g~s~~------~vs~~Ll~~Gv~~~~Gn~~gGrl~dr~~~~------------~l~~~  282 (394)
T COG2814         222 LFMTGHFALYTYIRPFL-ESVAGFSVS------AVSLVLLAFGIAGFIGNLLGGRLADRGPRR------------ALIAA  282 (394)
T ss_pred             HHHcchhhhHHhHHHHH-HHccCCCHh------HHHHHHHHHHHHHHHHHHHHhhhccccchh------------HHHHH
Confidence            33333344444443332 222222211      223344445566667777777777762222            24555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 006712          463 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY  542 (634)
Q Consensus       463 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~  542 (634)
                      .++.++.++.+.+..                      -+.+..+...++.+++........+.-..+.+ ++.++.++++
T Consensus       283 ~~l~a~~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl  339 (394)
T COG2814         283 LLLLALALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSL  339 (394)
T ss_pred             HHHHHHHHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHH
Confidence            566666666555443                      13333344444455555555555555555533 4789999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          543 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  609 (634)
Q Consensus       543 ~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~  609 (634)
                      +....++|..+|..+++.+.+..+                  +....+..+++.++++++.+...++
T Consensus       340 ~~aa~nlgia~GA~lGG~v~~~~g------------------~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         340 NVAAFNLGIALGAALGGLVLDALG------------------YAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc------------------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999877432                  3556777777777776666555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.94  E-value=5.2e-23  Score=221.82  Aligned_cols=354  Identities=12%  Similarity=0.042  Sum_probs=227.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 006712           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (634)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~  152 (634)
                      .+.+.+++..+....+.+.++ .+.+++|.|..+.++..+.+.++..++.++.|+++||+ ||||++.++.++..++.++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~   94 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLA   94 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence            333334443444444444444 35678999999999999999999999999999999998 9999999999988888888


Q ss_pred             HHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHH
Q 006712          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (634)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  232 (634)
                      +..+                            .+.+.+++.|+++|++.+...+...+++.|.+|+++      |.+.++
T Consensus        95 ~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~  140 (406)
T PRK15402         95 ILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITA  140 (406)
T ss_pred             HHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHH
Confidence            7775                            567888999999999999988999999999999988      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccccc
Q 006712          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFS  312 (634)
Q Consensus       233 ~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p  312 (634)
                      +.+....+|..++|.+++++.+..+|++.|++.++..++..+..+...++.+.+++++.+..                  
T Consensus       141 ~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  202 (406)
T PRK15402        141 LMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLK------------------  202 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHH------------------
Confidence            98888888999999999999888899999988777766655544333222111000000000                  


Q ss_pred             ccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHH
Q 006712          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL  392 (634)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~  392 (634)
                                                   +..+.....                  ..+++.....+...+...... .+
T Consensus       203 -----------------------------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-~~  234 (406)
T PRK15402        203 -----------------------------ELGRDYKLV------------------LKNRRFVAGALALGLVSLPLL-AW  234 (406)
T ss_pred             -----------------------------HHHHHHHHH------------------HcCcHHHHHHHHHHHHHHHHH-HH
Confidence                                         000000000                  001111111111111111111 11


Q ss_pred             HhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 006712          393 TEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIW  472 (634)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~  472 (634)
                      ......+..+..+.+.      ...+.......+..++..++.+++.||+.+|           +.+.++.++.+++++.
T Consensus       235 ~~~~p~~~~~~~g~~~------~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~-----------~~~~~~~~~~~~g~~~  297 (406)
T PRK15402        235 IALSPVILISGEQLSS------YEYGLLQVPVFGALIAGNLTLARLTSRRPLR-----------SLIRMGLWPMVAGLLL  297 (406)
T ss_pred             HHHhHHHHHHHhCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHH
Confidence            1111112111111111      1112222222334445566666666665554           3366777777777666


Q ss_pred             HHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHH
Q 006712          473 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF  552 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  552 (634)
                      +......                . + .+.++++...++.++|++...+..+...... +++.+|+..+++++.+.++..
T Consensus       298 ~~~~~~~----------------~-~-~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~  358 (406)
T PRK15402        298 AALATVI----------------S-S-HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFT  358 (406)
T ss_pred             HHHHHHc----------------c-c-ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHH
Confidence            5543211                0 0 2456677778889999998888877766544 458999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 006712          553 AASILNSIIKSV  564 (634)
Q Consensus       553 lg~~l~~~v~~~  564 (634)
                      +|+.+.+.+.+.
T Consensus       359 ~g~~~~~~l~~~  370 (406)
T PRK15402        359 VGIELSKHAYLG  370 (406)
T ss_pred             HHHHHHHhcccC
Confidence            999999887653

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.94  E-value=3.2e-23  Score=218.94  Aligned_cols=358  Identities=14%  Similarity=0.017  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 006712           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~  153 (634)
                      ++...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            445566666666556666676665 5899999999999999999999999999999998 99999999999888877777


Q ss_pred             HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH
Q 006712          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (634)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  233 (634)
                      .+....    +.                   .+.+.++++|+++|++.+...+...++++|++|+++      |++.+++
T Consensus        82 ~~~~~~----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  132 (365)
T TIGR00900        82 PFVALL----GG-------------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL  132 (365)
T ss_pred             HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence            665210    00                   277889999999999999999999999999999988      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccc
Q 006712          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSS  313 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~  313 (634)
                      ++.+.++|..++|.+++++.+..+|++.|++.++..++..+..+..+.+...+++ .++.+                   
T Consensus       133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------------  192 (365)
T TIGR00900       133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-IQALS-------------------  192 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-ccccc-------------------
Confidence            9999999999999999999988999999988776655554443332211110000 00000                   


Q ss_pred             cccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-HHHHHHHHHHH
Q 006712          314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVIL  392 (634)
Q Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~~~~~~~~  392 (634)
                                             .+   ...+..+           .++     ...+.+.+...... ++....+....
T Consensus       193 -----------------------~~---~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (365)
T TIGR00900       193 -----------------------NA---VLRDTRE-----------GIK-----FVLKNPLLRTLLLLALLFNLVFAPAI  230 (365)
T ss_pred             -----------------------hh---HHHHHHh-----------HHH-----HHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence                                   00   0000000           000     00000111111111 11111111111


Q ss_pred             HhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 006712          393 TEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIW  472 (634)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~  472 (634)
                      ......+..+..+.+.      ...+.+.....+..++..++.+++.|+..||           +.+..+.++.+++++.
T Consensus       231 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~  293 (365)
T TIGR00900       231 VALFPYVQSKYLGRGS------THYGWVLAAFGLGALLGALLLGLLGRYFKRM-----------ALMTGAIFVIGLAILV  293 (365)
T ss_pred             HHHhHHHHHHHhCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----------HHHHHHHHHHHHHHHH
Confidence            1111222221112211      1123333444455556666666665555443           3345555555555554


Q ss_pred             HHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHH
Q 006712          473 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF  552 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  552 (634)
                      .....                      .+.+.+.+..++.|++.+...+...++..+..|++.|++++|+.+....++..
T Consensus       294 ~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  351 (365)
T TIGR00900       294 VGLTP----------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP  351 (365)
T ss_pred             HHhhc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            44321                      02455566778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 006712          553 AASILNSIIKS  563 (634)
Q Consensus       553 lg~~l~~~v~~  563 (634)
                      +++.+.+.+.+
T Consensus       352 ~g~~~~g~l~~  362 (365)
T TIGR00900       352 LGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHH
Confidence            99999987765

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.94  E-value=2.4e-23  Score=221.76  Aligned_cols=383  Identities=16%  Similarity=0.094  Sum_probs=235.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 006712           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (634)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (634)
                      ....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..+++++              
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~--------------   79 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA--------------   79 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH--------------
Confidence            344568889999999999999999999999999999999998 99999999999999888888876              


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006712          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (634)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~  250 (634)
                                    .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++++...++|..++|.+++
T Consensus        80 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        80 --------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             --------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence                          578899999999999999999999999999999988      999999999999999999999999


Q ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccC
Q 006712          251 YIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIK  330 (634)
Q Consensus       251 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~  330 (634)
                      ++.+..+|++.|++.++..++..+..+...++.+.++....+..            +..         ..+....+.   
T Consensus       140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---------~~~~~~~~~---  195 (399)
T TIGR00893       140 WILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEE------------KYI---------VVGGLLAEQ---  195 (399)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHH------------Hhh---------cchhhcccc---
Confidence            99888999999998877665555444433332211111000000            000         000000000   


Q ss_pred             CCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCC
Q 006712          331 GSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM  410 (634)
Q Consensus       331 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (634)
                             .+             .. .....+...  .+....+++.............+..+....+.+..+..+.+   
T Consensus       196 -------~~-------------~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  249 (399)
T TIGR00893       196 -------QG-------------KG-PSTPKKYQI--KELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLS---  249 (399)
T ss_pred             -------cc-------------cc-ccCCCccch--HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc---
Confidence                   00             00 000000000  00001112221111111111111111112222222222222   


Q ss_pred             CCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc
Q 006712          411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE  490 (634)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~  490 (634)
                         ....+.+.....+..++..++.+++.||+.||...          +........++.+.........          
T Consensus       250 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----------  306 (399)
T TIGR00893       250 ---ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS----------LVFARKTAIIAGLVLSLLMFAT----------  306 (399)
T ss_pred             ---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------hhHHHHHHHHHHHHHHHHHHHh----------
Confidence               11234445556666778888899999998887311          1111111111111111000000          


Q ss_pred             ccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCC
Q 006712          491 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK  570 (634)
Q Consensus       491 ~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~  570 (634)
                           ... .+.+..+....+.+.+.+ ..+...++..+..|++.|++++|+.+...++|+.+++.+.+.+.+..+    
T Consensus       307 -----~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g----  375 (399)
T TIGR00893       307 -----NYV-NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG----  375 (399)
T ss_pred             -----ccc-hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC----
Confidence                 000 122233333333333333 788999999999999999999999999999999999999998765322    


Q ss_pred             CCCCccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 006712          571 GQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLY  605 (634)
Q Consensus       571 ~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~  605 (634)
                                   ++...|++.+++.+++.+..++
T Consensus       376 -------------~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       376 -------------SFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             -------------chhHHHHHHHHHHHHHHHHHHH
Confidence                         1345677777766666555543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2.1e-24  Score=230.00  Aligned_cols=401  Identities=14%  Similarity=0.071  Sum_probs=266.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhH
Q 006712          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM  187 (634)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (634)
                      +.++++|.++.+++..+.|+++||+ |||..++++.++.+++.++..++...                         ...
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~  116 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF  116 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence            6788899999999999999999998 99999999999988888877776321                         567


Q ss_pred             HHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHhhccchHHHHHHH
Q 006712          188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV--YIQMEHGWGSAFGAL  265 (634)
Q Consensus       188 ~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~--~l~~~~gw~~~f~~~  265 (634)
                      .+++++|++.|+..|......+.++.|..|.+-      ||..-.+...+.++|..++..++.  .+.....|++.+.+.
T Consensus       117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~  190 (485)
T KOG0569|consen  117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP  190 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence            899999999999999999999999999999999      999999999999999999966552  233455699998888


Q ss_pred             HHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccc-cCCCccccCCCcccccCCcchH-
Q 006712          266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRC-  343 (634)
Q Consensus       266 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-  343 (634)
                      .+..++.+++..+                                +||||+| ++. ++++++|.+..+..+..++++- 
T Consensus       191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence            8877766666544                                6889998 655 6677776666555544433221 


Q ss_pred             HHHH-HhhhccccC--CCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccc
Q 006712          344 LDKA-ALELKEDVI--NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM  420 (634)
Q Consensus       344 ~~~a-~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (634)
                      .+.. .....++..  +...+++..+.+ ..|+.+...+.+.+++..........++..+....++...      .+...
T Consensus       238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~-~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~------~a~~a  310 (485)
T KOG0569|consen  238 IEEMLREIEEEELEKKKQISLRQLLKNP-TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPE------EAQYA  310 (485)
T ss_pred             HHHHHHHHHHhccccccCCcHHHHhcCc-chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHH------HHHHH
Confidence            1111 111111111  112221111111 1222232333333333333222222223333322222211      12233


Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcc
Q 006712          421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  500 (634)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (634)
                      +.....+.++...+..+++||++||..           +.++..++.++.+++...........             +-+
T Consensus       311 n~~~g~v~~~~t~~~~~lid~~gRRpL-----------ll~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~  366 (485)
T KOG0569|consen  311 NLGIGIVNLLSTLVSPFLIDRLGRRPL-----------LLISLSLMAVALLLMSIALFLSNSFG-------------SWL  366 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhh-------------hHH
Confidence            344455556666777789999998843           66677666666655554432210000             001


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCC
Q 006712          501 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  580 (634)
Q Consensus       501 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~  580 (634)
                      ++..++..+++...-.....|..+-+..|.+|++.|+.++++..+.+++.+++.....+.+.+..|              
T Consensus       367 ~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--------------  432 (485)
T KOG0569|consen  367 SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--------------  432 (485)
T ss_pred             HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence            122223333333334445578889999999999999999999999999999999999999887655              


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHhhccceeccccCCCCchh
Q 006712          581 NTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYE  623 (634)
Q Consensus       581 ~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  623 (634)
                           .++|+++++.+++..+..++..+|+|+|+.+|+.+..+
T Consensus       433 -----~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  433 -----PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             -----chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence                 25788889999999999999999999998766554444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.94  E-value=5.1e-26  Score=242.09  Aligned_cols=365  Identities=32%  Similarity=0.455  Sum_probs=246.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhcc
Q 006712          136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ  215 (634)
Q Consensus       136 r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~  215 (634)
                      +|+++++.+++++|.+++.+++..+....                   +.+...++++++++++|.|+.+|++.++++||
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~-------------------~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq   61 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLPS-------------------GIQLGLFYIGLALIAVGTGGIKPNISPFGADQ   61 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhhh-------------------hHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            48999999999999999888765433311                   14567899999999999999999999999999


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccC-CCCCCcHH
Q 006712          216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT  294 (634)
Q Consensus       216 ~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~  294 (634)
                      +++++   ...|.++++++|++.|+|+.+++.+.+++++++||.+.|.++.+.+++++++++..++.++.+ ++.+++..
T Consensus        62 ~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~  138 (372)
T PF00854_consen   62 YDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT  138 (372)
T ss_dssp             SSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred             hcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence            99873   133999999999999999999999999999999999999999999999999999999998887 67777777


Q ss_pred             H-HHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCc-cccchhhhHH
Q 006712          295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV  372 (634)
Q Consensus       295 ~-~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~  372 (634)
                      + ...+...+.+++....|....+ +........    .......  ..... +.......   ...|. .++.+++++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~--~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~  207 (372)
T PF00854_consen  139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS----ERSIFGI--IVFIR-AAVIFFPE---IFFWALFCQVQRVEEL  207 (372)
T ss_dssp             --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC----CCCCCCC--CCHHH-HHHHHCCC---HHHHTTTSSTTTHHHC
T ss_pred             hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh----hhhhhhh--hhhcc-chhhhhhh---hhhcccCCccceeeee
Confidence            6 4555566666665544433222 111100000    0000000  00000 00000000   00011 1234456677


Q ss_pred             HHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCC-ccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCC
Q 006712          373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPR  451 (634)
Q Consensus       373 k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~  451 (634)
                      |.+.+.++.+.+.+.++....+...+...+...++..+++ +.+++.+++++|.+.++++.|+.+++++|+.|+.    .
T Consensus       208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~----~  283 (372)
T PF00854_consen  208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRG----I  283 (372)
T ss_dssp             CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred             eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhc----c
Confidence            7777888888778888888888877777877777777877 8999999999999999999999999999999832    3


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006712          452 GASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEA  531 (634)
Q Consensus       452 ~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~  531 (634)
                      ..+...++.+|++++.+++++...++..|.....+.+.          .+.+|.++.+++..++|.+..+...+..++.+
T Consensus       284 ~~~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a  353 (372)
T PF00854_consen  284 QPSPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCGK----------VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFA  353 (372)
T ss_dssp             ----HHHHHHH-HHHHHHHHTTTHHHH---HH----TT------------THHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence            48899999999999999999988888766655555442          34578889999999999999999999888888


Q ss_pred             chhhHHHHHHHHHHHh
Q 006712          532 PDAMKSIGSAYAALAG  547 (634)
Q Consensus       532 P~~~rg~~~g~~~~~~  547 (634)
                      |++..+.++|++....
T Consensus       354 ~~~~p~~m~~~~~~~~  369 (372)
T PF00854_consen  354 PSRAPSSMMGIWFALS  369 (372)
T ss_dssp             TTT-SSSSTHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHh
Confidence            8887777777777654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=7.2e-23  Score=220.50  Aligned_cols=380  Identities=12%  Similarity=0.050  Sum_probs=246.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      .........++..+++....+.++.|++ ++|.+..+     .+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   92 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence            3555566777777887777788888875 58888654     48888999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+++...                            .+.+.+++.|++.|++.+ ..+...+++.|.+|+++    
T Consensus        93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~----  139 (408)
T PRK09874         93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK----  139 (408)
T ss_pred             HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence            888887777665                            567889999999999865 46777888999999888    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF  304 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~  304 (634)
                        |++..++++.+.++|..++|.+++++.+..+|++.|++..+..++..+..+...++.....++++.            
T Consensus       140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  205 (408)
T PRK09874        140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM------------  205 (408)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh------------
Confidence              999999999999999999999999998888999999988776655554443332221100000000            


Q ss_pred             hhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHH
Q 006712          305 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC  384 (634)
Q Consensus       305 ~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~  384 (634)
                                                          .+..+...   .           .     ++.+.....+..   
T Consensus       206 ------------------------------------~~~~~~~~---~-----------~-----~~~~~~~~~~~~---  227 (408)
T PRK09874        206 ------------------------------------LHMREVVT---S-----------L-----KNPKLVLSLFVT---  227 (408)
T ss_pred             ------------------------------------hHHHHHHH---h-----------C-----cCCchHHHHHHH---
Confidence                                                00000000   0           0     000111111111   


Q ss_pred             HHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHH
Q 006712          385 TIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA  464 (634)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~  464 (634)
                      ...+..........+..+...............+.+..+..+..++..++.+++.||+.||.           .+..+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~  296 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-----------ILITALI  296 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----------hHHHHHH
Confidence            11111111111111111111110000000000112223334455566777788888776662           2455555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 006712          465 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA  544 (634)
Q Consensus       465 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  544 (634)
                      +.+++++......                       +.+.+.+..++.|++.+...+...+...+..|++.+|..+++++
T Consensus       297 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  353 (408)
T PRK09874        297 FSVLLLIPMSFVQ-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQ  353 (408)
T ss_pred             HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHH
Confidence            5555444333221                       33444555677889999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 006712          545 LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  608 (634)
Q Consensus       545 ~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~  608 (634)
                      ....+|..+|+.+.+.+.+..+                  +...|++.+++.+++.+..++..+
T Consensus       354 ~~~~~g~~~gp~~~G~l~~~~g------------------~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISANYG------------------FRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHhhcc------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998765322                  346788888877777766655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=2.6e-24  Score=235.65  Aligned_cols=413  Identities=15%  Similarity=0.140  Sum_probs=235.0

Q ss_pred             HHHHHHhCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 006712           94 TFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN  165 (634)
Q Consensus        94 ~yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (634)
                      ..+..+++++        ..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++.+++.+...       
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~-------  123 (481)
T TIGR00879        52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF-------  123 (481)
T ss_pred             hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            3444555555        89999999999999999999999999998 9999999999999998888866421       


Q ss_pred             CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 006712          166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (634)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~  245 (634)
                                        ..+.+.++++|+++|++.+...+...++++|.+|+++      |++.+++++.+.++|..++
T Consensus       124 ------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~  179 (481)
T TIGR00879       124 ------------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVA  179 (481)
T ss_pred             ------------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHH
Confidence                              0345688999999999999999999999999999999      9999999999999999999


Q ss_pred             HHHH---HHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccccccccccccccc
Q 006712          246 FTLV---VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEV  322 (634)
Q Consensus       246 p~i~---~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~  322 (634)
                      |.++   +.+.+..+||+.|++.++..++.++..++..+..+....++. .....+..    ++..            ..
T Consensus       180 ~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~----~~~~------------~~  242 (481)
T TIGR00879       180 YGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSL----ARLR------------GT  242 (481)
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC-hHHHHHHH----HHHh------------CC
Confidence            9988   666677899999999666555444443332221100000000 00000000    0000            00


Q ss_pred             CCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhh--HHH
Q 006712          323 PGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLT--LSV  400 (634)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~--~~~  400 (634)
                      ++.+.      .  ..+..+..+.......  ......|...........+......  .+..............  .+.
T Consensus       243 ~~~~~------~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  310 (481)
T TIGR00879       243 SGEDK------E--LLDELELIDIKRSIEK--RSVQPSWGSLFSSTRRIRRRLFLGV--VLQWFQQFTGINAIMYYSPTI  310 (481)
T ss_pred             CCCcH------H--HHHHHHHHHHHHHHHH--hhccccHHHHHhcCchhHHHHHHHH--HHHHHHHHhCCeehHHHHHHH
Confidence            00000      0  0000000000000000  0000001110000000001111000  0000000000000001  111


Q ss_pred             HHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006712          401 QQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR  480 (634)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~  480 (634)
                      .+..+.+.      .....+.....+..++..++.+++.||++||.           .+.+++++++++++++.......
T Consensus       311 ~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  373 (481)
T TIGR00879       311 FENAGVST------DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP-----------LLLIGAAGMAICLFVLGILGASF  373 (481)
T ss_pred             HHHcCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHHhhcc
Confidence            11111111      11233444455566677778888888887763           25566666666666655322110


Q ss_pred             HhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006712          481 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  560 (634)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~  560 (634)
                           ...       ..+..+..+++...++.+.......+....+..+..|++.|+.++|+.+...++|+.+++.+.+.
T Consensus       374 -----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       374 -----VTG-------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             -----cCC-------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 000       00001223333333333333333446667778999999999999999999999999999999987


Q ss_pred             hhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceecc
Q 006712          561 IKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS  614 (634)
Q Consensus       561 v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~  614 (634)
                      +.+..+        |          ...|+++++++++..++.+++.++.|+++
T Consensus       442 ~~~~~~--------~----------~~~f~~~~~~~~~~~i~~~~~~~~~~~~~  477 (481)
T TIGR00879       442 MLESIG--------V----------GGVFIFFGGLNVLGLIFVYFFLPETKGRT  477 (481)
T ss_pred             HHHhcC--------c----------cceehhHHHHHHHHHHHHheecccCCCCC
Confidence            765322        2          34577888888877777766666655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.93  E-value=3.4e-23  Score=223.59  Aligned_cols=180  Identities=15%  Similarity=0.072  Sum_probs=152.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      .+|+.++.+.+..+++.+....+.. ....+++++|++.++.+++.+.+.++..++.++.|+++||+ |||+++..++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence            4677677776666666666654444 45589999999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      +.++.++++++                            .+...++++|+++|++.+...|....++.|.+|+++     
T Consensus        83 ~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~-----  129 (412)
T TIGR02332        83 WGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF-----  129 (412)
T ss_pred             HHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH-----
Confidence            99999988886                            577899999999999999999999999999999988     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                       |++.+++++.+..+|..++|.+++++.+      ..|||+.|++.++..++..++.++..+
T Consensus       130 -rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       130 -RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence             9999999999999999999999998864      368999999977665554444444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.93  E-value=3.5e-22  Score=214.36  Aligned_cols=175  Identities=13%  Similarity=0.118  Sum_probs=151.5

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 006712           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (634)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~  142 (634)
                      ..|..|+.+..+.+..++.....|.....++. +.+++|+++++.++..+.+.++..++.++.|+++||+ |||+++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~   91 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF   91 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence            34557777677766666666666655555554 5678999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcc
Q 006712          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (634)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~  222 (634)
                      .++..++.+++.++                            .+.+.+++.|+++|++.+...+...+++.|++|+++  
T Consensus        92 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~--  141 (394)
T PRK10213         92 AVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT--  141 (394)
T ss_pred             HHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH--
Confidence            99999988888775                            678999999999999999999999999999999998  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 006712          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (634)
Q Consensus       223 ~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~  273 (634)
                          |+++.+++..+.++|..++|.+++++.+..||++.|++.++..++..
T Consensus       142 ----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        142 ----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence                99999999999999999999999999999999999998776554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.93  E-value=2.9e-23  Score=228.88  Aligned_cols=400  Identities=16%  Similarity=0.118  Sum_probs=249.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      +..+.+..++..+....+. ....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVN-VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            4445555555555554444 445567788999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      +++..+                            .+...++++|+++|++.+...+...+++.|.+|+++      |+++
T Consensus        82 ~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  127 (485)
T TIGR00711        82 LLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRA  127 (485)
T ss_pred             HHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHH
Confidence            888776                            578889999999999999999999999999999988      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccc
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAA  310 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~  310 (634)
                      +++++....+|..++|.+++++.++.+|++.|++.....++..+......++.++++.  ++.+.....+......... 
T Consensus       128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~-  204 (485)
T TIGR00711       128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLL-  204 (485)
T ss_pred             HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999998877665555554444433221111  1111111111000000000 


Q ss_pred             ccccccccccccCCCccccCCCcccccCCcchHHH------HHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHH
Q 006712          311 FSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD------KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC  384 (634)
Q Consensus       311 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~  384 (634)
                      ..      +.+.+ .+       ....+.......      .......+. ....|....  +-..+++.....+..++.
T Consensus       205 ~~------~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~  267 (485)
T TIGR00711       205 YG------LSEGP-ER-------GWFDSNEILILSITGLVAIIAFVVWEL-TDDNPLVDL--RLFKYRNFTIGCVYMSLL  267 (485)
T ss_pred             HH------HhhCC-CC-------CCCCchHHHHHHHHHHHHHHHHHHHHH-cCCCCccCH--HHHcCCChHHHHHHHHHH
Confidence            00      00000 00       000000000000      000000000 001111100  000111111111111111


Q ss_pred             HHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHH
Q 006712          385 TIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA  464 (634)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~  464 (634)
                      ...++.... +...+.++..+.+.      ...+.......+..++..++.+++.||+.+|           +.+.+|.+
T Consensus       268 ~~~~~~~~~-~~p~~~~~~~g~s~------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~  329 (485)
T TIGR00711       268 GLGLYGSFY-LLPLYLQQVLGYTA------LQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLI  329 (485)
T ss_pred             HHHHHHHHH-HHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHH
Confidence            111111111 11222222122211      1233444555666777888888888877665           23666777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 006712          465 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA  544 (634)
Q Consensus       465 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  544 (634)
                      +.++++.++.....                   ++.+.+.++...++.|+|.++..++......+..|++.++.++|+.+
T Consensus       330 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  390 (485)
T TIGR00711       330 LYAVGFYWRAFTFT-------------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSN  390 (485)
T ss_pred             HHHHHHHHHhccCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHH
Confidence            77666655442110                   11345556666788899999998888888899999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhhc
Q 006712          545 LAGGLGCFAASILNSIIKS  563 (634)
Q Consensus       545 ~~~~ig~~lg~~l~~~v~~  563 (634)
                      +.+.+|+.+|+.+.+.+.+
T Consensus       391 ~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       391 FTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.93  E-value=5.1e-23  Score=220.90  Aligned_cols=175  Identities=13%  Similarity=0.197  Sum_probs=152.3

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 006712           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (634)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~  142 (634)
                      ..+++|+.+....+..+...+..+.+... ...+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            34577888888888888888888665555 4567889999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcc
Q 006712          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (634)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~  222 (634)
                      .++..++.+++.++                            .+.+.+++.|++.|++.+...+...+++.|.+|+++  
T Consensus        84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--  133 (405)
T TIGR00891        84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--  133 (405)
T ss_pred             HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence            99988888888775                            567889999999999999999999999999999988  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHH
Q 006712          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISN  273 (634)
Q Consensus       223 ~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g--w~~~f~~~~~~~~i~~  273 (634)
                          |++..++++.+..+|..+++.+++.+.+..+  |++.|++.++..++.+
T Consensus       134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence                9999999999999999999999998887666  9999987665544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=1.3e-22  Score=220.12  Aligned_cols=168  Identities=16%  Similarity=0.185  Sum_probs=146.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +.+|+.+....+..+...+..+.. .++..++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            345666666666666666666544 4455677889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+.+.++                            .+.+.++++|+++|++.+...+....++.|.+|+++    
T Consensus        92 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~----  139 (426)
T PRK12307         92 AYSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL----  139 (426)
T ss_pred             HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH----
Confidence            999998888876                            678899999999999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~  268 (634)
                        |+++.+++..+..+|..++|.+.+++.+..+|++.|++..+.
T Consensus       140 --r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        140 --KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             --hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence              999999999999999999999999998889999999875543

>PRK09952 shikimate transporter; Provisional

Probab=99.93  E-value=3.1e-22  Score=217.81  Aligned_cols=396  Identities=13%  Similarity=0.099  Sum_probs=227.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHhhhccchhH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYW  137 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~~~~~~-----~~~~~~~~~~~l~~G~lsDr~~GRr~  137 (634)
                      .++|+.++...+..+++.+-...+....+.++.+++  +.++.+ +++.     ++..++..++.++.|+++||+ |||+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~   95 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence            344566666666777776666544444455666665  677663 4433     233344567788899999998 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC
Q 006712          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (634)
Q Consensus       138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (634)
                      +++++.+++.++.++++++..+....                    -.....+++.|+++|++.|+..+....++.|.+|
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  155 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP  155 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence            99999999999999988862110000                    0112368889999999999999999999999999


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 006712          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPG  289 (634)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  289 (634)
                      +++      |+...+....+..+|..++..+..++.        ..+|||+.|++.++..++.+   +. ++.       
T Consensus       156 ~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~---~l-~~~-------  218 (438)
T PRK09952        156 KNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL---WV-RNG-------  218 (438)
T ss_pred             CCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH---HH-HHh-------
Confidence            998      999999888888899888877766654        25799999998766543322   11 111       


Q ss_pred             CCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhh
Q 006712          290 GSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQV  369 (634)
Q Consensus       290 ~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  369 (634)
                                           .||+|++ ....++.++         ..+                  ..++.   +.-.
T Consensus       219 ---------------------~~es~~~-~~~~~~~~~---------~~~------------------~~~~~---~~l~  246 (438)
T PRK09952        219 ---------------------MEESAEF-EQQQHEQAA---------AKK------------------RIPVI---EALL  246 (438)
T ss_pred             ---------------------CCCChhH-HHHHhhccc---------ccc------------------cCCHH---HHHH
Confidence                                 1111111 000000000         000                  00000   0000


Q ss_pred             hHHHHHHhHhhH-HHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccC
Q 006712          370 EEVKTLVRLVPI-PACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG  448 (634)
Q Consensus       370 ~~~k~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~  448 (634)
                      ++++........ +.....++....+.++ +..+..+++..      .......+.....++..++.+++.||++||+. 
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~g~s~~------~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~-  318 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALN-YSTQNLGLPRE------LFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV-  318 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-
Confidence            111111111111 1112222222222222 22222222211      00112223344456667788899998887732 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006712          449 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY  528 (634)
Q Consensus       449 ~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~  528 (634)
                                +..+.++..++.+.+......                  . .+.+.++...++.+++.+...+..+.+..
T Consensus       319 ----------~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  369 (438)
T PRK09952        319 ----------YITGALIGTLSAFPFFMALEA------------------Q-SIFWIVFFSIMLANIAHDMVVCVQQPMFT  369 (438)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHc------------------C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      444444444433222221100                  0 12333344455567777777888899999


Q ss_pred             hhcchhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 006712          529 EEAPDAMKSIGSAYAALA-GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFL  604 (634)
Q Consensus       529 ~~~P~~~rg~~~g~~~~~-~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~  604 (634)
                      |.+|.+.|+.+.|+.+.. +.+++.++|.+.+.+.+.++      .+|          ...+..++++.+++++..+
T Consensus       370 e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~------~~~----------~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        370 EMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG------GSW----------HSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCc----------hHHHHHHHHHHHHHHHHHH
Confidence            999999999999996544 55899999999988766332      123          3345555566666555544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.93  E-value=1.6e-22  Score=217.00  Aligned_cols=371  Identities=11%  Similarity=0.021  Sum_probs=238.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 006712           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~  153 (634)
                      ..++.+..+..++.+.+.+| .+.+++|+|.++.+++.+.+.++..++.++.|+++||+ |||+++..+..++.++.+++
T Consensus        14 ~~~~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~   91 (393)
T PRK09705         14 LVLIGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMR   91 (393)
T ss_pred             HHHHHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence            33333444444444554444 57789999999999999999999999999999999998 99999999999999999999


Q ss_pred             HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH
Q 006712          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (634)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  233 (634)
                      +++                            +++..++++|+++|++.+...+....++.|.+| ++      |++.+++
T Consensus        92 ~~a----------------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~  136 (393)
T PRK09705         92 ELY----------------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGL  136 (393)
T ss_pred             HHC----------------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHH
Confidence            987                            677889999999999999999999999999997 66      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccccc
Q 006712          234 FYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFS  312 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p  312 (634)
                      +..+.++|..+++.+++++.++. +||+.+.+.++..++.++.++...++   ++++++                     
T Consensus       137 ~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------  192 (393)
T PRK09705        137 WSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR---EVASSH---------------------  192 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCcccc---------------------
Confidence            99999999999999999988775 79988766554433333322221111   000000                     


Q ss_pred             ccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHH
Q 006712          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL  392 (634)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~  392 (634)
                       ++..                                         .+.+..     .+.+.....+........++...
T Consensus       193 -~~~~-----------------------------------------~~~~~l-----~~~~~~~l~~~~~~~~~~~~~~~  225 (393)
T PRK09705        193 -KTTT-----------------------------------------TPVRVV-----FTPRAWTLGVYFGLINGGYASLI  225 (393)
T ss_pred             -CCCc-----------------------------------------CCcccc-----cCHhHHHHHHHHHHHHHHHHHHH
Confidence             0000                                         000000     01111111111112222222222


Q ss_pred             HhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 006712          393 TEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIW  472 (634)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~  472 (634)
                      .+.+.++ .+ .+.+..      ..+....+..+..++..++.+++.||..+|           +.+.+++.+..+++..
T Consensus       226 ~~lp~~l-~~-~g~s~~------~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~  286 (393)
T PRK09705        226 AWLPAFY-IE-IGASAQ------YSGSLLALMTLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCG  286 (393)
T ss_pred             HHHHHHH-HH-cCCChh------hhhHHHHHHHHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHH
Confidence            2232222 22 222211      233344455556666666777666665544           3355566666665544


Q ss_pred             HHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHH
Q 006712          473 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGC  551 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~ig~  551 (634)
                      +....                      .+...+  ..++.+++.+...+.......+..+ ++.++...|+.+....++.
T Consensus       287 ~~~~~----------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~  342 (393)
T PRK09705        287 FIWLP----------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIA  342 (393)
T ss_pred             HHHcc----------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            33222                      111111  1234567777777777777777774 6789999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcccee
Q 006712          552 FAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  612 (634)
Q Consensus       552 ~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~  612 (634)
                      .+++.+.+.+.+.++       +          +...|.+.++..++.....+.+.++++.
T Consensus       343 ~~gp~~~G~l~~~~g-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        343 GLAPWFSGVLRSISG-------N----------YLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHHHHHHhC-------C----------chHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999998887544       1          2345666666666666665666555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.93  E-value=3.1e-22  Score=217.55  Aligned_cols=176  Identities=16%  Similarity=0.193  Sum_probs=131.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHH---HHHHHHHHHhhhccchhHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLGISQ---ASSVLGGFLADAYLGRYWTIAI  141 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~---~~~l~~G~lsDr~~GRr~~i~~  141 (634)
                      ++.+....+..+++.+.+.. ...+..++.++++   .+..+.+.+...+.....   ++.+++|+++||+ |||+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~   98 (432)
T PRK10406         21 IWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHH
Confidence            33444455556677666654 5566778888884   555554444444444444   8999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCc
Q 006712          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (634)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~  221 (634)
                      +.+++.++.++++++..+....                    ......+++.|+++|++.|+..+...++++|.+|+++ 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~-  157 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR-  157 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc-
Confidence            9999999999888762110000                    0234578899999999999999999999999999998 


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHHHHHH
Q 006712          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI  271 (634)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~--------~~~gw~~~f~~~~~~~~i  271 (634)
                           |++..++.+.+.+.|..+++.+...+.        ..+|||+.|++.++..++
T Consensus       158 -----rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        158 -----KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence                 999999988888888888887655543        257999999987665443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=2.4e-22  Score=213.04  Aligned_cols=154  Identities=14%  Similarity=0.106  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCc
Q 006712           89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (634)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (634)
                      .......+.+++|+|.++.+++.+.+.+++.++.++.|+++||+ |||+++..+......+.. +....           
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~-----------   76 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP-----------   76 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-----------
Confidence            34445567889999999999999999999999999999999998 999887655544444332 22210           


Q ss_pred             ccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006712          169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (634)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i  248 (634)
                                      .+...++++|+++|++.+. ........+|.+|+++      |++.+++.+.+..+|..+++++
T Consensus        77 ----------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~  133 (368)
T TIGR00903        77 ----------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAA  133 (368)
T ss_pred             ----------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                            3678999999999999986 4555666799999988      9999999999999999999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          249 VVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       249 ~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      ++++.+..|||+.|++.+++.++..++.+.
T Consensus       134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999866665555444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.93  E-value=7.9e-23  Score=223.55  Aligned_cols=156  Identities=11%  Similarity=0.069  Sum_probs=125.4

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 006712           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (634)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (634)
                      ....|+.++ |++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+.++++...           
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~-----------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA-----------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence            344577777 99999999999999999999999999999998 99999999999988888777764110           


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 006712          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV  249 (634)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~~p~i~  249 (634)
                                   ..+...+++.|++.|++.+...+.....+.|++|+++      |++++++++.+.++|+. .+|+++
T Consensus       117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~  177 (452)
T PRK11273        117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL  177 (452)
T ss_pred             -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence                         0356778889999999999988888889999999998      99999999999998875 455544


Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          250 VYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       250 ~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      ..+....+||+.|++.++..++..++...
T Consensus       178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~~  206 (452)
T PRK11273        178 LGMAWFNDWHAALYMPAFAAILVALFAFA  206 (452)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            34434458999999877665554443333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.93  E-value=4.9e-23  Score=226.10  Aligned_cols=155  Identities=15%  Similarity=0.073  Sum_probs=128.1

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccc
Q 006712           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (634)
Q Consensus        93 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (634)
                      ...+.+++|++.++.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++...++.....             
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------  117 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------  117 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            4567889999999999999999999999999999999998 99999999888877776665542100             


Q ss_pred             ccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006712          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (634)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l  252 (634)
                                ...+...+++.|+++|++.+...|...++++|++|+++      |++.++++..+.++|..+++.+..++
T Consensus       118 ----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        118 ----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             ----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHH
Confidence                      00578899999999999999999999999999999999      99999999999999999999888777


Q ss_pred             hhcc---chHHHHHHHHHHHHHHHHHHH
Q 006712          253 QMEH---GWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       253 ~~~~---gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      .+..   +|+..|.+.++..++..++.+
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~  209 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGFIGL  209 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence            6543   588888776665544433333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.93  E-value=3.5e-22  Score=212.45  Aligned_cols=365  Identities=12%  Similarity=0.057  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH-HHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGIT  154 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~-~~~~~~~~~~~~~  154 (634)
                      +..++..++.....+.++.|+++++|.|.++.+++.+.+.+...+..++.|+++||+ ||||.+++ +.++..++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            456777788888888899999999999999999999999999999999999999998 99887655 4454455556666


Q ss_pred             HhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH--HH
Q 006712          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--FN  232 (634)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~--~~  232 (634)
                      .+                            .+.+.+++.|+++|.+.+...|...++..|..|++.      |...  .+
T Consensus        83 ~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~  128 (375)
T TIGR00899        83 WN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSS  128 (375)
T ss_pred             hc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHH
Confidence            54                            567778888888888888888888888889887665      5544  56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccccc
Q 006712          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFS  312 (634)
Q Consensus       233 ~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p  312 (634)
                      +.+.+.++|..++|.+++++.+..+|++.|++.++..++..+..+...++.++++++..                     
T Consensus       129 ~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  187 (375)
T TIGR00899       129 VMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---------------------  187 (375)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---------------------
Confidence            77778899999999999999988999999999887665555544333332111000000                     


Q ss_pred             ccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHH
Q 006712          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL  392 (634)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~  392 (634)
                                                .+.+..+              .+   .   ..+.+.+.  ...++....... +
T Consensus       188 --------------------------~~~~~~~--------------~~---~---~~~~~~~~--~~~~~~~~~~~~-~  218 (375)
T TIGR00899       188 --------------------------TRLEVRG--------------LL---A---SRDTRLLF--VACTLMWGCNIL-Y  218 (375)
T ss_pred             --------------------------Ccchhhh--------------hh---c---CcchHHHH--HHHHHHHHHHHH-H
Confidence                                      0000000              00   0   00111111  101111111111 1


Q ss_pred             HhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 006712          393 TEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIW  472 (634)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~  472 (634)
                      ......+..+..+.+..      ..+.+.....+..++..++.+++.||+.+|.           .+.++.++..+.+..
T Consensus       219 ~~~~~~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----------~~~~~~~~~~~~~~~  281 (375)
T TIGR00899       219 IINMPLLIIHELGLPDK------LAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-----------LMLLAALAGVAFYTG  281 (375)
T ss_pred             HhhhHHHHHHHcCCCHH------HHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-----------HHHHHHHHHHHHHHH
Confidence            11112222222222211      1122223333444555667778877776652           244444444333332


Q ss_pred             HHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHH
Q 006712          473 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF  552 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  552 (634)
                      .....                       +.+.++...++.+++.+...+....+..+..|++ ++.++++.+...++|..
T Consensus       282 ~~~~~-----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~  337 (375)
T TIGR00899       282 LAADN-----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWI  337 (375)
T ss_pred             HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHH
Confidence            22211                       3344445566678888888888888888888865 57999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 006712          553 AASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFL  604 (634)
Q Consensus       553 lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~  604 (634)
                      +++.+.+.+.+..+                  ++..|++.+++.+++.++..
T Consensus       338 ~g~~~~g~~~~~~g------------------~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       338 IAGSVGGILAERWS------------------YHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHhcc------------------chhHHHHHHHHHHHHHHHHh
Confidence            99999998766332                  24567777777666666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.93  E-value=1.4e-22  Score=221.52  Aligned_cols=352  Identities=11%  Similarity=0.023  Sum_probs=214.7

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccc
Q 006712           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (634)
Q Consensus        93 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (634)
                      ...+.+++|.+.++.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++++                
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~----------------  104 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS----------------  104 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence            3456789999999999999999999999999999999998 99999999999998888888776                


Q ss_pred             ccccCCCCCccchhHHHHHH-HHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006712          173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (634)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~  251 (634)
                                  .+.+.+++ .|++.|++.+...+...+++.+.++ ++      |++..++++.+..+|..++|.++++
T Consensus       105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~  165 (455)
T TIGR00892       105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY  165 (455)
T ss_pred             ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence                        45666654 4688999998776677788889885 56      9999999999999999999999999


Q ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCC
Q 006712          252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG  331 (634)
Q Consensus       252 l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~  331 (634)
                      +.+.+|||+.|++.+++.++..+..++.++..........                     +..     +..+.+.  ..
T Consensus       166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------------~~~-----~~~~~~~--~~  217 (455)
T TIGR00892       166 LFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKS---------------------KSK-----EGLPPDG--ST  217 (455)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc---------------------ccc-----ccCCCCC--cc
Confidence            9999999999999887766555444433322110000000                     000     0000000  00


Q ss_pred             CcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh-HHHHHHHHHHHHHhhhhHHHHHHhhcccCC
Q 006712          332 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPACTIMLNVILTEFLTLSVQQAYTMNTHM  410 (634)
Q Consensus       332 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (634)
                       .+...   ....+.           ..++..+   +.-..+.+...+. .++....++........ +..+ .+.+   
T Consensus       218 -~~~~~---~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~-~g~s---  274 (455)
T TIGR00892       218 -KKLSK---KSTAEK-----------INRFLDF---SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVP-YAKD-KGVD---  274 (455)
T ss_pred             -ccccc---cchhhh-----------hhhhcch---HHhcCchHHHHHHHHHHHHHHccchHHHHHH-HHHH-cCCC---
Confidence             00000   000000           0000000   0000111111111 11111111111111111 1111 1111   


Q ss_pred             CCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc
Q 006712          411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYE  490 (634)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~  490 (634)
                         ....+.+..+..+..++..++.+++.|+...+       ..+...+.+++++.++++++....              
T Consensus       275 ---~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~l~~ll~~~~--------------  330 (455)
T TIGR00892       275 ---EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR-------PHVQYLFSFALLFNGLTHLLCALA--------------  330 (455)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------HHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence               11223344445555666677777777642111       111122333333333333332221              


Q ss_pred             ccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Q 006712          491 FSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV  564 (634)
Q Consensus       491 ~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~  564 (634)
                               .+.+++++..++.|++.+...+...+.+.+.+|++.++.++|+.++..++|+.+|+.+.+.+.+.
T Consensus       331 ---------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  395 (455)
T TIGR00892       331 ---------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA  395 (455)
T ss_pred             ---------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence                     13455566677788999899999999999999999999999999999999999999999877653

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.93  E-value=9.8e-23  Score=216.06  Aligned_cols=355  Identities=11%  Similarity=-0.007  Sum_probs=227.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      |+.+.......+.. ...|.. ..+..++.+++|+|.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~   79 (377)
T TIGR00890         3 WYVLVGTVIMCFTS-GYVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYG   79 (377)
T ss_pred             EEEeHHHHHHHHHh-hHHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHH
Confidence            44333333333333 224443 3456778889999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++.++++++                            .+.+.++++|++.|++.+...+.....+.+.+| ++      |
T Consensus        80 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~  124 (377)
T TIGR00890        80 LGFTFYAIA----------------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------R  124 (377)
T ss_pred             HHHHHHHHH----------------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------c
Confidence            999888887                            678899999999999999888888888888886 45      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhh
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR  307 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~  307 (634)
                      ++..+++..+.++|..+++.+.+.+.+..+||+.|++.++..++..+..+...++.++++..++                
T Consensus       125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  188 (377)
T TIGR00890       125 GLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN----------------  188 (377)
T ss_pred             HHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC----------------
Confidence            9999999999999988777677777777899999998887665555444333221110000000                


Q ss_pred             cccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHH
Q 006712          308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIM  387 (634)
Q Consensus       308 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~  387 (634)
                                       .+        . ..++.+..   +               .    ..+++ ........+....
T Consensus       189 -----------------~~--------~-~~~~~~~~---~---------------~----~~~~~-~~~~~~~~~~~~~  219 (377)
T TIGR00890       189 -----------------IE--------V-SVKDYTVW---E---------------M----LRTPQ-FWVLYLSFFLNAV  219 (377)
T ss_pred             -----------------cc--------c-chhhhhHH---H---------------H----HcCcc-HHHHHHHHHHHhH
Confidence                             00        0 00000000   0               0    00011 1111111111111


Q ss_pred             HHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHH
Q 006712          388 LNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI  467 (634)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~  467 (634)
                      ...........+. +..+.+      ....+.+..+..+..++..++.+++.||+.||..           +.++.++.+
T Consensus       220 ~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------~~~~~~~~~  281 (377)
T TIGR00890       220 SGLLLIGLYKPYG-QSLGLS------DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT-----------MSIVFGISA  281 (377)
T ss_pred             HHHHHHHHHHHHH-HHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHH
Confidence            1111111111111 111111      1112334455666677788888999998877632           555666666


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHh
Q 006712          468 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAG  547 (634)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  547 (634)
                      ++++.......                     .+...++...++.+++.+...+....+..+..|++.|+++.|+.+...
T Consensus       282 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  340 (377)
T TIGR00890       282 VGMAAMLFIPM---------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAK  340 (377)
T ss_pred             HHHHHHHHccc---------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHH
Confidence            66554433220                     112222233445566666666667788889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 006712          548 GLGCFAASILNSIIKSV  564 (634)
Q Consensus       548 ~ig~~lg~~l~~~v~~~  564 (634)
                      .+|..+++.+.+.+.+.
T Consensus       341 ~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       341 AVAGIFGGLIASHALTE  357 (377)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999987653

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=231.01  Aligned_cols=403  Identities=14%  Similarity=0.111  Sum_probs=260.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccch
Q 006712          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (634)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (634)
                      +.+++.+.+.++..++.++.|+++|++ |||++++++.+++.+|.++++++                            .
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------------~  140 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------------P  140 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence            448999999999999999999999998 99999999999999999999998                            7


Q ss_pred             hHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHH
Q 006712          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA  264 (634)
Q Consensus       186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~-~gw~~~f~~  264 (634)
                      +..+++++|+++|+|.|+.....+.+++|..|++.      |+...+.++...++|..++..++....+. .+||..+++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~  214 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL  214 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence            89999999999999999999999999999999999      99999999999999999995444444332 489988888


Q ss_pred             HHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCccccc-CCc--c
Q 006712          265 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH-TDD--F  341 (634)
Q Consensus       265 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~-~~~--~  341 (634)
                      ..+..++..+..++                                .||+|+| +.+.++.+++.....++.. +++  .
T Consensus       215 ~~i~~~~~~~~~~~--------------------------------~pesp~~-L~~~g~~~~a~~~l~~l~g~~~~~~~  261 (513)
T KOG0254|consen  215 ALIPAVILALGMLF--------------------------------LPESPRW-LIEKGRLEEAKRSLKRLRGLSPEDVE  261 (513)
T ss_pred             HHHHHHHHHHHHHh--------------------------------CCCChHH-HHHcCChHHHHHHHHHHhCCCCcchH
Confidence            77766655555333                                3455555 5554444444333322222 111  1


Q ss_pred             hHHHHHH---hhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCc
Q 006712          342 RCLDKAA---LELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT  418 (634)
Q Consensus       342 ~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (634)
                      ...+...   ........+...|+++..  ...+|+....+.+..++.........+++..+.+..+...       +..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~-------~~~  332 (513)
T KOG0254|consen  262 VELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS-------DTF  332 (513)
T ss_pred             HHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC-------chH
Confidence            1111111   000000011112222222  1233444333333333333322222222222233222221       113


Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCC
Q 006712          419 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  498 (634)
Q Consensus       419 ~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (634)
                      ....+..+...+...+...++||++||.           .+..|.+.+.+++++++.............          .
T Consensus       333 ~~~~~~~~v~~~~t~~~~~lvd~~gRr~-----------lll~s~~~m~~~~~~~~~~~~~~~~~~~~~----------~  391 (513)
T KOG0254|consen  333 LASIILGVVNFLGTLVATYLVDRFGRRK-----------LLLFGAAGMSICLVILAVVGVFALYYPNSS----------K  391 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHH-----------HHHHhHHHHHHHHHHHHHHHHHhccCCCcc----------c
Confidence            3344444555555556678889998884           378888888888887776553311000000          0


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccc
Q 006712          499 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ  578 (634)
Q Consensus       499 ~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~  578 (634)
                      ...++.++...++.........+..+.+..+.+|.+.|+.+.++....+++.+++-...........+            
T Consensus       392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~------------  459 (513)
T KOG0254|consen  392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG------------  459 (513)
T ss_pred             chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc------------
Confidence            02344445555555555666677778899999999999999999999999999998777665544210            


Q ss_pred             CCccchhhHHHHHHHHHHHHHHH-HHHHhhccceeccccCCCCchhh
Q 006712          579 NINTGRFDYLYWLLAVLSVINFC-AFLYSAYRYKYRSEQKHGNDYEV  624 (634)
Q Consensus       579 ~~~~~~~~~~f~~~a~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~  624 (634)
                            ....|+.+++++.+... +++++.+++|+++.||+++.++.
T Consensus       460 ------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  460 ------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             ------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence                  01346666666666666 78889999999998877665543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.92  E-value=1e-21  Score=209.55  Aligned_cols=354  Identities=14%  Similarity=0.061  Sum_probs=232.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      +++.++.+.+..+...++.....+.+ .++.+++|.|.++.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            44555666666666666665555544 456788999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .++.+++..+                            .+.+.+++.|++.|++.+...+...+++.|.+|+++      
T Consensus        81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------  126 (385)
T TIGR00710        81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------  126 (385)
T ss_pred             HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence            9888888776                            567888999999999999999999999999999888      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      |++.+++++....+|..++|.+++++.+..+|++.|++.++..++..+..+...++.+.++.+ +...            
T Consensus       127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------  193 (385)
T TIGR00710       127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEAR-IQIS------------  193 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc-CCHH------------
Confidence            999999999999999999999999999889999999887776655555444333321111000 0000            


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-HHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACT  385 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~  385 (634)
                                                        ..+.+..                    +....+++...... .+..
T Consensus       194 ----------------------------------~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~  219 (385)
T TIGR00710       194 ----------------------------------TYFETFL--------------------LLLKSKMFWGYALIYGASF  219 (385)
T ss_pred             ----------------------------------HHHHHHH--------------------HHHcCchhHHHHHHHHHHH
Confidence                                              0000000                    00000111111111 1111


Q ss_pred             HHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHH
Q 006712          386 IMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAV  465 (634)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l  465 (634)
                      ..++. +......+..+..+.+..      ..+.+.....+..++..++.+++.||+.+|           +.+..+.++
T Consensus       220 ~~~~~-~~~~~~~~~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~-----------~~~~~~~~~  281 (385)
T TIGR00710       220 GGFFA-FFSGAPFVYIDIMGVSPS------VFGLLFALNIIAMIFGGFLNGRFIKKWGAK-----------SLLRMGLIL  281 (385)
T ss_pred             HHHHH-HHHcChHHHHHHcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHH
Confidence            11111 111112222222222211      223344445566677777888888777665           235556666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 006712          466 SILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL  545 (634)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  545 (634)
                      ..++.+++......                . . .+...++...++.+++.+...+....+..+..| +.+++++++.+.
T Consensus       282 ~~~~~~~~~~~~~~----------------~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  342 (385)
T TIGR00710       282 FAVSAVLLEITAIL----------------G-L-GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGT  342 (385)
T ss_pred             HHHHHHHHHHHHHh----------------c-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHH
Confidence            66655544433211                0 0 123344555667888999999999999888887 679999999988


Q ss_pred             HhHHHHHHHHHHHHH
Q 006712          546 AGGLGCFAASILNSI  560 (634)
Q Consensus       546 ~~~ig~~lg~~l~~~  560 (634)
                      ....++.+.+.+.+.
T Consensus       343 ~~~~~g~i~~~~~~~  357 (385)
T TIGR00710       343 LRLVLGAIVGYLVSL  357 (385)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            877666565555553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.92  E-value=5.3e-22  Score=212.18  Aligned_cols=172  Identities=13%  Similarity=0.098  Sum_probs=150.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      +.++...+..+...+..+...+.++ .+.+++|.+.++.++..+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            3466777777777777766666655 46778999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +.++++++                            .+.+.+++.|++.|++.+...+....++.|.+|+++      |+
T Consensus        81 ~~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~  126 (382)
T PRK10091         81 GNAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT  126 (382)
T ss_pred             HHHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence            99888876                            678999999999999999988888899999999888      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (634)
                      +.++++..+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus       127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI  174 (382)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988999999998877655554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.92  E-value=5.1e-22  Score=218.31  Aligned_cols=176  Identities=15%  Similarity=0.075  Sum_probs=135.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      ++++.+.......++..+..+.+... ..++.+++|++.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~  110 (476)
T PLN00028         33 PHMRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLML  110 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            34555555555555555555554433 4467889999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.++++++                            .+...++++|+++|++.+...+ ...+++|.+|+++     
T Consensus       111 ~~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~-----  156 (476)
T PLN00028        111 TAPAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI-----  156 (476)
T ss_pred             HHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh-----
Confidence            88888777775                            5677888899999999887544 5567899999998     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHh----h-----ccchHHHHHHHHHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~----~-----~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                       |++++++.+...++|..+++.+.+.+.    +     ..|||+.|++.+++.++..+..++
T Consensus       157 -rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        157 -VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             -eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence             999999988777777777766554432    2     248999999888766555444433

>PRK03699 putative transporter; Provisional

Probab=99.92  E-value=7.5e-22  Score=211.96  Aligned_cols=174  Identities=7%  Similarity=0.047  Sum_probs=145.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      +|||..+...+..++.....+.+...++ .+.+++|+|.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            4667777777776666666555555544 46788999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.+++.++                            .+.+.+++.|+++|++.|...+...+++.|.+|+++     
T Consensus        82 ~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~-----  128 (394)
T PRK03699         82 MILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ-----  128 (394)
T ss_pred             HHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch-----
Confidence            88888888775                            567888999999999999988999999999999888     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~-~~gw~~~f~~~~~~~~i~~~~  275 (634)
                       |++.++..+....+|+.++|.+.+++.. ..+||+.|++.++..++..++
T Consensus       129 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        129 -RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence             9999998888888999999999888754 579999998877665544433

>TIGR00898 2A0119 cation transport protein

Probab=99.92  E-value=2.3e-23  Score=231.18  Aligned_cols=387  Identities=11%  Similarity=0.042  Sum_probs=234.1

Q ss_pred             HHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccc
Q 006712           95 FMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (634)
Q Consensus        95 yl~~~~~~s---~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (634)
                      .+.+++|++   ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++++++               
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---------------  177 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---------------  177 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence            466789998   89999999999999999999999999998 99999999999999888888776               


Q ss_pred             cccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006712          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (634)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~  251 (634)
                                   .+.+.+++.|++.|++.++..+...+++.|.+|+++      |+...+++..+..+|..++|.++.+
T Consensus       178 -------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  238 (505)
T TIGR00898       178 -------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYF  238 (505)
T ss_pred             -------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         678899999999999999999999999999999998      9999999988999999999988776


Q ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCC
Q 006712          252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG  331 (634)
Q Consensus       252 l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~  331 (634)
                      +.+   ||+.|++.++..++..+..++..+..+....++ ...+..+.+....+......++.    ...          
T Consensus       239 ~~~---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~-~~~~a~~~l~~~~~~~~~~~~~~----~~~----------  300 (505)
T TIGR00898       239 IPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQG-RIEEALKILQRIAKINGKKLPAE----VLS----------  300 (505)
T ss_pred             hhH---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCC-CHHHHHHHHHHHHHHcCCCCCHH----HHh----------
Confidence            654   999999887766655555433222111000111 11111111111111110000000    000          


Q ss_pred             CcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCC
Q 006712          332 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG  411 (634)
Q Consensus       332 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (634)
                                  ....+.. ... .+...++...+    + +.+.....   .....+.....     .++.......  
T Consensus       301 ------------~~~~~~~-~~~-~~~~~~~~l~~----~-~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~--  351 (505)
T TIGR00898       301 ------------LSLEKDL-SSS-KKQYSFLDLFR----T-PNLRKTTL---CLMMLWFTTAF-----SYYGLVLDLG--  351 (505)
T ss_pred             ------------hhhhhhh-hhc-cCCCcHHHHhC----C-hHHHHHHH---HHHHHHHHHHH-----HHHHHhcccc--
Confidence                        0000000 000 00001100000    0 11111110   01111111110     0010000000  


Q ss_pred             CccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccc
Q 006712          412 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF  491 (634)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (634)
                      ...........+..+..+....+..++.||++||.           .+.+++++.+++++.+.....             
T Consensus       352 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~-----------~~~~~~~~~~~~~l~~~~~~~-------------  407 (505)
T TIGR00898       352 NLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRY-----------TMAASLLLAGVALLLLLFVPV-------------  407 (505)
T ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-----------HHHHHHHHHHHHHHHHHHcCC-------------
Confidence            00111112223344445556666778888887763           356666666666655444320             


Q ss_pred             cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCC
Q 006712          492 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG  571 (634)
Q Consensus       492 ~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~  571 (634)
                              ...++.+...++.+++.....+..+.+..|.+|++.|+.++|+.+....+|+.+++.+.+ +....      
T Consensus       408 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~------  472 (505)
T TIGR00898       408 --------DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKW------  472 (505)
T ss_pred             --------CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHH------
Confidence                    122344444556667777778888999999999999999999999999999999999888 33210      


Q ss_pred             CCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceecccc
Q 006712          572 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ  616 (634)
Q Consensus       572 ~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~~~  616 (634)
                                   ....+++++++.+++.++.+ +.++++++.++
T Consensus       473 -------------~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~  503 (505)
T TIGR00898       473 -------------LFLPLVLFGGLALLAGILTL-FLPETKGVPLP  503 (505)
T ss_pred             -------------HhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCC
Confidence                         12345666666666655544 44676665544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=4.3e-22  Score=208.74  Aligned_cols=347  Identities=20%  Similarity=0.224  Sum_probs=260.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 006712           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (634)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~  152 (634)
                      .+....+...+..+......+.|. +++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            445566777777777777777766 56799999999999999999999999999999998 9999999999999999888


Q ss_pred             HHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHH
Q 006712          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (634)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  232 (634)
                      +.+.                            .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.++
T Consensus        81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  126 (352)
T cd06174          81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG  126 (352)
T ss_pred             HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence            8876                            567889999999999999999999999999999988      999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccccc
Q 006712          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFS  312 (634)
Q Consensus       233 ~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p  312 (634)
                      +.+...++|..++|.+++++.+..+|++.|++..+..++..+......                                
T Consensus       127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  174 (352)
T cd06174         127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--------------------------------  174 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence            999999999999999999999988999999988877666555443311                                


Q ss_pred             ccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHH
Q 006712          313 SSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVIL  392 (634)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~  392 (634)
                                                                                  |.+................+
T Consensus       175 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~  194 (352)
T cd06174         175 ------------------------------------------------------------RLLLLLALAFFLLSFGYYGL  194 (352)
T ss_pred             ------------------------------------------------------------HHHHHHHHHHHHHHhHHHHH
Confidence                                                                        00001111111111111111


Q ss_pred             HhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 006712          393 TEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIW  472 (634)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~  472 (634)
                      ......+..+..+.+      ....+.+.....+..++..++.+++.||..+|..          .+..+.++..++.+.
T Consensus       195 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~~  258 (352)
T cd06174         195 LTYLPLYLQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL----------LLLIGLLLAALGLLL  258 (352)
T ss_pred             HHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHHHH
Confidence            111122222111111      1123445566677777888888888888777630          366777777777666


Q ss_pred             HHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHH
Q 006712          473 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCF  552 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~  552 (634)
                      .....                       +.+.+.+..++.+++.+...+...++..+..|++.|++.+|+.+....++..
T Consensus       259 ~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (352)
T cd06174         259 LALAP-----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA  315 (352)
T ss_pred             HHHhc-----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence            55432                       3566677788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHH
Q 006712          553 AASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFL  604 (634)
Q Consensus       553 lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~  604 (634)
                      +++.+.+.+.+..+        |          ...|++.+++.++..++.+
T Consensus       316 i~~~i~g~l~~~~~--------~----------~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         316 LGPLLAGLLLDTGG--------Y----------GGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHhcccC--------c----------chHHHHHHHHHHHHHHHhe
Confidence            99999998765221        2          3567777777766655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=9.8e-23  Score=214.25  Aligned_cols=351  Identities=20%  Similarity=0.201  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 006712           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (634)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~  154 (634)
                      ++..++..+........++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            3455666677766666666688999999999999999999999999999999999998 999999999999999855555


Q ss_pred             HhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHH
Q 006712          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (634)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  234 (634)
                      ++                            .+.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.
T Consensus        81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~  126 (352)
T PF07690_consen   81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL  126 (352)
T ss_dssp             HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred             hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence            54                            345689999999999999999999999999999988      99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccccccc
Q 006712          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSS  314 (634)
Q Consensus       235 ~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~  314 (634)
                      +.+.++|..++|.+++++.+..+|++.|++.++..++..++.....++.+.++++.++                      
T Consensus       127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~----------------------  184 (352)
T PF07690_consen  127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP----------------------  184 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS----------------------
T ss_pred             cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccc----------------------
Confidence            9999999999999999999888999999998888777766433332221111110000                      


Q ss_pred             ccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHh
Q 006712          315 ELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTE  394 (634)
Q Consensus       315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~  394 (634)
                                .+            ++    ...          ..+++.. .+...+.+.+...+...+.....+.....
T Consensus       185 ----------~~------------~~----~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (352)
T PF07690_consen  185 ----------KE------------SE----SKK----------PKPLKPG-FKSLFKNPVLWILLIAFFLFFFVFSGFSF  227 (352)
T ss_dssp             ----------TT------------TT------H----------HHCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cc------------cc----ccc----------ccccccc-cccccccchhhhhhhhhhHHHHHHHHhhc
Confidence                      00            00    000          0000000 00011111111111111111111111111


Q ss_pred             hhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 006712          395 FLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAG  474 (634)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~  474 (634)
                      ....+..+..+.+ .    ....+.+..+..+..++..++.+++.||+.+|.           ...+......++.+.+.
T Consensus       228 ~~~~~l~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  228 FLPLYLQEVLGFS-G----PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-----------RLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHHHCCHHHHCC-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHC
T ss_pred             ccchhhhhccCCC-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHHHHHHHHHHHHHH
Confidence            1111111222222 0    011223344455555666777888877766542           23333333333333322


Q ss_pred             HHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHH
Q 006712          475 IFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAA  554 (634)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg  554 (634)
                      .....                    .+..+.....++.|++.+...+...+++.+.+|++.+|++.|+.+...+++..++
T Consensus       292 ~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig  351 (352)
T PF07690_consen  292 LLPFS--------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG  351 (352)
T ss_dssp             CSHHH--------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            22211                    1345566677788999999999999999999999999999999999999999988


Q ss_pred             H
Q 006712          555 S  555 (634)
Q Consensus       555 ~  555 (634)
                      |
T Consensus       352 P  352 (352)
T PF07690_consen  352 P  352 (352)
T ss_dssp             H
T ss_pred             C
Confidence            6

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=3.4e-21  Score=206.79  Aligned_cols=173  Identities=12%  Similarity=0.073  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHH-HHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA-IFTTIYL  147 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~lsDr~~GRr~~i~-~~~~~~~  147 (634)
                      ..+......++..++...+.+.++.|+.+++|.|.++.+++.+.+.+ +..++++++|+ +||+ ||||.++ .+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence            35666667888888888888999999999999999999999876655 55566666666 9998 9988755 4455444


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++..+++++                            .+.+.+++.+.+.+...+...|...++..|..++++      |
T Consensus        94 ~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  139 (393)
T PRK15011         94 LACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------R  139 (393)
T ss_pred             HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------c
Confidence            555555554                            455665555544444445667888888888776654      4


Q ss_pred             h--hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          228 D--RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       228 ~--~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      .  ...++.+.+.++|..++|.+++++.++.|||+.|++.++..++..+....
T Consensus       140 ~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        140 EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            3  34467888999999999999999999899999999887765555444443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.92  E-value=2.5e-21  Score=206.87  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=138.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      .+.++.++...++..+....+.+.+|.|+. ++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            356788888888988888888888888776 6899999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++...++++                            .+.+.++++|+++|++.+...+...+.+.|..++++      |
T Consensus        83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~  128 (381)
T PRK03633         83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R  128 (381)
T ss_pred             HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence            888887776                            578889999999999999998888888889988887      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG  259 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~  259 (634)
                      ++.+++++.+.++|..+||.+++++.+...|.
T Consensus       129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            99999999999999999999999987654333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.92  E-value=4.8e-21  Score=206.82  Aligned_cols=148  Identities=15%  Similarity=0.080  Sum_probs=132.8

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccc
Q 006712           95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ  174 (634)
Q Consensus        95 yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (634)
                      .+.+++|.+.+++++.+++|.++..++.+++|+++||+ |||++++.+.+++.++.+++.++                  
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------  101 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------  101 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc------------------
Confidence            36789999999999999999999999999999999998 99999999999999998888876                  


Q ss_pred             ccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                                .+.+.++++|+++|++.+...+...+++.|.+|+++      |.+.+++++.+.++|..+||.+++++.+
T Consensus       102 ----------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403        102 ----------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      578899999999999998777777888999999988      9999999999999999999999999988


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHH
Q 006712          255 EHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       255 ~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      ..||++.|++.++..++..+..+
T Consensus       166 ~~gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        166 FVHWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHH
Confidence            88999999988877666555433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=7.1e-22  Score=216.88  Aligned_cols=378  Identities=14%  Similarity=0.085  Sum_probs=229.1

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 006712           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (634)
Q Consensus        99 ~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (634)
                      +++++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++.++..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999988888777655411                    


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 006712          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G  257 (634)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~-g  257 (634)
                            .+...+++.|+++|++.+...+....+++|.+|+++      |++.+++++.+.++|..++|.+++++.+.. +
T Consensus       129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g  196 (465)
T TIGR00894       129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG  196 (465)
T ss_pred             ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                  345678999999999999999999999999999999      999999999999999999999999998884 9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCccccc
Q 006712          258 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH  337 (634)
Q Consensus       258 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~  337 (634)
                      |++.|++.++..++..++++...++.+++.+..++. ..                                         
T Consensus       197 w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~-----------------------------------------  234 (465)
T TIGR00894       197 WPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKF-EK-----------------------------------------  234 (465)
T ss_pred             CCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHH-HH-----------------------------------------
Confidence            999999988776555554444332211111100000 00                                         


Q ss_pred             CCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh-HHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCcccc
Q 006712          338 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP  416 (634)
Q Consensus       338 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (634)
                          +..+...........+..+|+..     ...+.+..... .+.....++....+.+. +..+..+.+..      .
T Consensus       235 ----~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~g~s~~------~  298 (465)
T TIGR00894       235 ----KYINSSLQGQKGSTRQSLPIKAI-----PKSLPVWAIWFAIFGHFWLYTILPTYLPT-FISWVLRVSGK------E  298 (465)
T ss_pred             ----HHHHhhcccccCCCCCCCCHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcChH------H
Confidence                00000000000000001112111     01111111111 11222222222222322 32332333321      2


Q ss_pred             CccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCC
Q 006712          417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA  496 (634)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (634)
                      .+.+..+..+..++..++.+++.|++.+|...+   .....++..+..+...+...+.....                  
T Consensus       299 ~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  357 (465)
T TIGR00894       299 NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS---LTAARKIFNGIGGLGPGIFAYALPYL------------------  357 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHc------------------
Confidence            344555667777888889999999987663321   11111222222211111111111110                  


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 006712          497 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  576 (634)
Q Consensus       497 ~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~  576 (634)
                       . .+..+.+..+.+.+.+..+..+.......+..|. .+|.++|+.++...+++.+++.+.+.+.+...        | 
T Consensus       358 -~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~--------~-  425 (465)
T TIGR00894       358 -S-AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDS--------K-  425 (465)
T ss_pred             -C-CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC--------c-
Confidence             0 1233333344444445455555555566666765 89999999999999999999999886654211        1 


Q ss_pred             ccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 006712          577 AQNINTGRFDYLYWLLAVLSVINFCAFLYS  606 (634)
Q Consensus       577 ~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~  606 (634)
                            +.+...|++.+++.+++.+++.+.
T Consensus       426 ------~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       426 ------NVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHHeeee
Confidence                  123556777777777776665543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.91  E-value=1.7e-21  Score=211.98  Aligned_cols=176  Identities=15%  Similarity=0.092  Sum_probs=130.7

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH-HHHHHHH-----HHHHHHHHHHHhhhccchhH
Q 006712           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA-VNNFLGI-----SQASSVLGGFLADAYLGRYW  137 (634)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~-~~~~~~~-----~~~~~l~~G~lsDr~~GRr~  137 (634)
                      +..||+......+..+++.+-...+. ....++.++++.+..+.+.. .+....+     ..++.++.|+++||+ |||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~   87 (434)
T PRK15075         10 RESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRK   87 (434)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHH
Confidence            34556667777777777777775544 44557888999887765433 3332222     235788999999998 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC
Q 006712          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (634)
Q Consensus       138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (634)
                      +++.+.+++.++.++++++.....+.                    ......++++|+++|++.+...+....+++|.+|
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  147 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT  147 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence            99999999999999888862100000                    0001257889999999999999999999999999


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHHHHHHHH
Q 006712          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAI  267 (634)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~--------~~~gw~~~f~~~~~  267 (634)
                      +++      |++.++++....++|..+++.+++.+.        +..|||+.|++..+
T Consensus       148 ~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        148 PGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            999      999999988888888888887776652        46799999987543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.91  E-value=9.1e-22  Score=217.78  Aligned_cols=168  Identities=14%  Similarity=0.214  Sum_probs=146.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +.+|+.+..+.+..++..+..+.+. .+..++.+++|++..+.++..+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4566766666666666666665444 445667889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+++.++                            .+.+.++++|++.|++.++..+...+++.|.+|+++    
T Consensus        94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  141 (496)
T PRK03893         94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL----  141 (496)
T ss_pred             HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence            999888888876                            578889999999999999999999999999999998    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~  268 (634)
                        |++.+++++.+.++|..++|.+.+++.+..+|++.|++..+.
T Consensus       142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence              999999999999999999999999999999999999875443

>TIGR00895 2A0115 benzoate transport

Probab=99.91  E-value=2.4e-21  Score=207.11  Aligned_cols=384  Identities=15%  Similarity=0.088  Sum_probs=234.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +.+|+.+....+..+...+..+. ......++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAA-MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence            34555555555555555555543 34445667788999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+++.++                            .+.+.+++.+++.|++.+...+...++++|.+|+++    
T Consensus        91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----  138 (398)
T TIGR00895        91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----  138 (398)
T ss_pred             HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence            888887777765                            567788899999999999999999999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF  304 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~  304 (634)
                        |++.+++++.+..+|..++|.+++++.+..+|++.|++.++...+..++.....++......++++ ....+..... 
T Consensus       139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-  214 (398)
T TIGR00895       139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAI-  214 (398)
T ss_pred             --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHHHH-
Confidence              999999999999999999999999999989999999887654444444333333322111000000 0000000000 


Q ss_pred             hhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-HH
Q 006712          305 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PA  383 (634)
Q Consensus       305 ~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~  383 (634)
                      ..+      .    ..+   .++.  . .. ...+.....              ..++.... . ...+........ +.
T Consensus       215 ~~~------~----~~~---~~~~--~-~~-~~~~~~~~~--------------~~~~~~~~-~-~~~~~~~~~~~~~~~  261 (398)
T TIGR00895       215 APQ------M----QAE---AQSA--L-PE-QKATQGTKR--------------SVFKALFQ-G-KTARITVLLWLLYFM  261 (398)
T ss_pred             HHh------c----ccc---cccc--c-cc-cccccchhh--------------HHHHHHhc-c-hhHHHHHHHHHHHHH
Confidence            000      0    000   0000  0 00 000000000              00000000 0 001111111111 11


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHH
Q 006712          384 CTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL  463 (634)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~  463 (634)
                      ....++...... . +..+..+.+      ....+.+.....+..++..++.+++.||+.+|.            +..+.
T Consensus       262 ~~~~~~~~~~~~-~-~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~  321 (398)
T TIGR00895       262 LLVGVYFLTNWL-P-KLMVELGFS------LSLAATGGALFNFGGVIGSIIFGWLADRLGPRV------------TALLL  321 (398)
T ss_pred             HHHHHHHHHHHH-H-HHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH------------HHHHH
Confidence            111111111111 1 111111111      112233444455666777777888877766541            33333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 006712          464 AVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA  543 (634)
Q Consensus       464 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  543 (634)
                      .+.++...+.....                      .+........++.+++.+...+...++..+.+|++.|+.++|+.
T Consensus       322 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  379 (398)
T TIGR00895       322 LLGAVFAVLVGSTL----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWA  379 (398)
T ss_pred             HHHHHHHHHHHHHh----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            33333332222211                      13344555667788999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHh
Q 006712          544 ALAGGLGCFAASILNSII  561 (634)
Q Consensus       544 ~~~~~ig~~lg~~l~~~v  561 (634)
                      +....+|..+++.+.+.+
T Consensus       380 ~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       380 IGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHhHHhc
Confidence            999999999999998754

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.91  E-value=1e-20  Score=203.03  Aligned_cols=174  Identities=14%  Similarity=0.105  Sum_probs=145.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      +.+|..+......++..+..+...+.+ .++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            356666666666666666665444443 456688999999999999999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.+++..+                            .+.+.+++.|++.|++.+...+....+..|.++.++     
T Consensus        83 ~~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  129 (394)
T PRK11652         83 FILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ-----  129 (394)
T ss_pred             HHHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH-----
Confidence            88888877765                            567889999999999999888888889999998887     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (634)
                       |++..+++..+..++..++|.+++++.+..||++.|++.++..++..+.
T Consensus       130 -~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        130 -LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999988889999999877655444333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.91  E-value=8.9e-21  Score=203.43  Aligned_cols=162  Identities=14%  Similarity=0.056  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++.+....++..++...+...++ .+.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||++++++.+++.++.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAI-ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC   82 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence            45566666776666544444444 34678999999999999999999999999999999998 99999999999998887


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      +.+.++                            .+.   ++.|+++|++.+...|...+++.|.+|+++      |+++
T Consensus        83 ~~~~~~----------------------------~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a  125 (393)
T PRK11195         83 LLMLFG----------------------------IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA  125 (393)
T ss_pred             HHHHHH----------------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            776654                            232   678999999999999999999999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~  272 (634)
                      .++.....++|..+||.++|++.+. .|+..+++.....+++
T Consensus       126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999874 4776666655444333

>TIGR00897 2A0118 polyol permease family

Probab=99.91  E-value=1.1e-20  Score=203.30  Aligned_cols=391  Identities=12%  Similarity=-0.002  Sum_probs=238.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      -+-||.+....+..++..++.+....+++.|+ +++|.+.++.++..+.+.++..++.+++|+++||+ ||||++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            34566777788888888888777777888887 57899999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+++.....     ..                   .+.+.+++.|++.|++.+...+...+.+.+.+|+++    
T Consensus        87 ~~~~~~~~~~~~~~-----~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~----  138 (402)
T TIGR00897        87 LWCVGHAAFIVFGL-----GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN----  138 (402)
T ss_pred             HHHHHHHHHHHHhc-----cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH----
Confidence            98887665532110     00                   356777889999999988888888888999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA  303 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~-~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a  303 (634)
                        |++++++++.+.++|. .++|.+++++.+..||+..++.......+..++.+...++.+ ++++.++           
T Consensus       139 --~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------  204 (402)
T TIGR00897       139 --LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIF-TPQHMQT-----------  204 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCC-CcccccC-----------
Confidence              9999999999999996 589999999888888765555444333333222222222110 0000000           


Q ss_pred             HhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHH
Q 006712          304 FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPA  383 (634)
Q Consensus       304 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~  383 (634)
                                           ++       +     ..+..+.              ++..    .++++.....+..++
T Consensus       205 ---------------------~~-------~-----~~~~~~~--------------~~~~----~~~~~~~~~~~~~~~  233 (402)
T TIGR00897       205 ---------------------RE-------K-----FSELGKA--------------ATIL----FTNPNVLLGGMVRII  233 (402)
T ss_pred             ---------------------Cc-------c-----hhhHHHH--------------HHHH----HcChhHHHHHHHHHH
Confidence                                 00       0     0000000              0000    001111111111111


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHH
Q 006712          384 CTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL  463 (634)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~  463 (634)
                      ....++....+.+ .+..+ .+++..      ..+.+..+..+..++..++.+++.||+.||..          .+..+.
T Consensus       234 ~~~~~~~~~~~~p-~~~~~-~g~s~~------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~----------~~~~~~  295 (402)
T TIGR00897       234 NTIGLFGFAVFLP-MFVAE-LGFSTS------EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT----------VRWFGG  295 (402)
T ss_pred             HHHHHHHHHHHHH-HHHHH-cCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH----------HHHHHH
Confidence            1122222222222 22221 222211      12233344556667778888888888876621          011222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 006712          464 AVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA  543 (634)
Q Consensus       464 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  543 (634)
                      +..+++.+.+......                . . .+.+..++..++.|++.....+ ......+. +++.||+++|+.
T Consensus       296 l~~~~~~~~l~~~~~~----------------~-~-~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~  355 (402)
T TIGR00897       296 VGCGIFTLALYYIPQH----------------F-G-HSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVL  355 (402)
T ss_pred             HHHHHHHHHHHHHHHc----------------c-C-CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHH
Confidence            2222222222211100                0 0 1344445556667777666544 34455555 456899999999


Q ss_pred             HHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 006712          544 ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS  606 (634)
Q Consensus       544 ~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~  606 (634)
                      ++...+++.+++.+.+.+.+..+                  +...|++.+++.+++.+...+.
T Consensus       356 ~~~~~lg~~~gp~i~g~l~~~~g------------------~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       356 NLSAGLSAFLAPAIAVLFIGFFG------------------AIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998876433                  2456777777777766665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.91  E-value=3.4e-21  Score=209.84  Aligned_cols=156  Identities=12%  Similarity=0.059  Sum_probs=128.0

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccc
Q 006712           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (634)
Q Consensus        92 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (634)
                      ...++++ +|.+.++.++..+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.....   .  .      
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~---~--~------  115 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW---A--T------  115 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc---c--c------
Confidence            3456665 599999999999999999999999999999998 9999999998888887776655311   0  0      


Q ss_pred             cccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006712          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (634)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~  251 (634)
                                   .+...+++.|++.|++.|...+.....+.|.+|+++      |++++++++.+.++|+.++|.+.+.
T Consensus       116 -------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       116 -------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             -------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHH
Confidence                         345677888999999999999989999999999999      9999999999999999999887775


Q ss_pred             Hh-hccchHHHHHHHHHHHHHHHHHHHHh
Q 006712          252 IQ-MEHGWGSAFGALAIAMGISNMLFFIG  279 (634)
Q Consensus       252 l~-~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (634)
                      +. ...+||+.|++.++..++..+..++.
T Consensus       177 ~~~~~~~w~~~f~~~~~~~~i~~~~~~~~  205 (438)
T TIGR00712       177 GMAWFNDWHAALYFPAICAIIVALFAFAM  205 (438)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            44 45689999999887766654444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=7.6e-22  Score=201.66  Aligned_cols=397  Identities=12%  Similarity=0.059  Sum_probs=254.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      +.++...++.+.+||.+.-+   ...++.++.++|.+|.+.+.+.+.+.+.++-.+.|.+|||. +.|+.+.+++++..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            56777778888888887644   55788899999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      ..+++.++                            .+...+.+..++.|..+|.-+|.+...++.+|++++      ||
T Consensus       107 ~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG  152 (448)
T COG2271         107 VNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG  152 (448)
T ss_pred             HHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence            99999987                            677888888899999999999999999999999999      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~--~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      +..++++.+-|+|+++.|.+.  +++..+.+||..|+++++++++..+..+...+..+++    .-              
T Consensus       153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs----~G--------------  214 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS----EG--------------  214 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc----cC--------------
Confidence            999999999999999999999  8999888999999999987665555544433322111    10              


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTI  386 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~  386 (634)
                          .|.-.++   ..+..|..    ++.++++.                 ...|+.+. +-+-..|.+   ..+.+..+
T Consensus       215 ----LP~ie~~---~~d~~e~~----~~~~~~~~-----------------ls~~~i~~-~YVL~Nk~i---W~la~a~v  262 (448)
T COG2271         215 ----LPPIEEY---RGDPLEIY----EEEKENEG-----------------LTAWQIFV-KYVLKNKLI---WLLALANV  262 (448)
T ss_pred             ----CCCHHHh---hcCchhhh----hhhccCCC-----------------ccHHHHHH-HHHHcChHH---HHHHHHHH
Confidence                1111111   00000000    00000000                 00010000 001111111   11122222


Q ss_pred             HHHHH---HHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHH
Q 006712          387 MLNVI---LTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL  463 (634)
Q Consensus       387 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~  463 (634)
                      ..|+.   .......++.+..+.+..      .+.+...+.-...+....+.++++|++.+...           ...++
T Consensus       263 fvYivR~gi~dW~p~YL~e~k~~s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR-----------~p~~~  325 (448)
T COG2271         263 FVYVVRYGINDWGPLYLSEVKGFSLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKGRR-----------GPMAL  325 (448)
T ss_pred             HHHHHHHHHhhhHHHHHHHhcCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhccccc-----------chHHH
Confidence            22221   122334555555555432      33333444455667788889999999975411           12222


Q ss_pred             HH---HHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcchhhHHH
Q 006712          464 AV---SILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVG--LLEFLYEEAPDAMKSI  538 (634)
Q Consensus       464 ~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~--~~~~~~~~~P~~~rg~  538 (634)
                      ++   ..+++..+...                     ++.+.+...+.+.  .+|.....|.  .-..+.|.+|++-.|+
T Consensus       326 i~~~~i~~~~~~~w~~---------------------~~~~~~l~~~~l~--~iGf~IyGPqmLiGl~a~e~~pK~AaGt  382 (448)
T COG2271         326 IFMLLITASLVLYWLA---------------------PNGSYLLDAILLF--IIGFLIYGPQMLIGLAAAEFVPKKAAGT  382 (448)
T ss_pred             HHHHHHHHHHHHHHcC---------------------CCccHHHHHHHHH--HHHHHHhhHHHHHHHHHhccccHhhccc
Confidence            22   22222222111                     1123333333333  3333333333  2345678899999999


Q ss_pred             HHHHHHHHhHH-HHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccce
Q 006712          539 GSAYAALAGGL-GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  611 (634)
Q Consensus       539 ~~g~~~~~~~i-g~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~  611 (634)
                      +.|+..++..+ |..++....+.+.+..        +|          +..|.++.+.++++.++++...+..+
T Consensus       383 A~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~--------gW----------~g~Fi~~~~~a~l~~lll~~~~~~~~  438 (448)
T COG2271         383 ATGFVGLFAYLIGAALAGLPLGYIADTW--------GW----------DGGFIVLSIAALLAILLLLPVWNAEE  438 (448)
T ss_pred             hhchhhhHHHHhhHHhcCCcceeeEecC--------CC----------cchHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999988 8888877777765532        36          45677777777777777666655433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.90  E-value=4.5e-20  Score=197.93  Aligned_cols=172  Identities=16%  Similarity=0.113  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      +....+..+....+.+...+.+| .+.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+.++++.+++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence            33444555556666655555444 55678999999999999999999999999999999998 99999999999988888


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .++..+                            .+...++++|+++|++.+...+...+++.|.+|+++      |++.
T Consensus        83 ~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~  128 (392)
T PRK10473         83 LLCSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKV  128 (392)
T ss_pred             HHHHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHH
Confidence            887765                            466788899999999999999999999999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      +++++...++|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus       129 ~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        129 LSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888889999998887665555544433

>PRK11043 putative transporter; Provisional

Probab=99.90  E-value=5.1e-20  Score=198.17  Aligned_cols=160  Identities=16%  Similarity=0.241  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHH--HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 006712           83 MAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK  160 (634)
Q Consensus        83 ~~~~~~~~~l~~y--l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~  160 (634)
                      ++++....++|.+  +.+++|.+.++.++..+++.++..++.+++|+++||+ |||+++..+.++..++..++.++    
T Consensus        17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~----   91 (401)
T PRK11043         17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV----   91 (401)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh----
Confidence            3333344444433  6789999999999999999999999999999999998 99999999998888888777765    


Q ss_pred             ccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHH
Q 006712          161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (634)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l  240 (634)
                                              .+.+.+++.|+++|++.+...+...+++.|.+|+++      +.+.++..+...++
T Consensus        92 ------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  141 (401)
T PRK11043         92 ------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVAL  141 (401)
T ss_pred             ------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHH
Confidence                                    567888999999999988888888899999999887      88888888888899


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006712          241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       241 g~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      |..++|.+++++.+..||++.|++..+..++..+..+
T Consensus       142 ~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        142 SPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999989999999887766655544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.90  E-value=8e-21  Score=205.76  Aligned_cols=393  Identities=10%  Similarity=-0.002  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .++......++..++++...++++.|+++++|+|..+.+++.+.+.++..+++++.|+++||+ |||++++++..+..++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~   89 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL   89 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            467777788888888888899999999999999999999999999999999999999999998 9999998876665554


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ...+......+....                    ......+++.++.|.+.....+....+. +..+ ++      ++.
T Consensus        90 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~------~g~  141 (420)
T PRK09528         90 FGPFFIYVFAPLLQY--------------------NILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVS-RR------SGF  141 (420)
T ss_pred             HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHhhhhhccchhhhhhHH-HHHH-hh------ccc
Confidence            432222100000000                    0111112223333333333333333332 1111 22      566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~  309 (634)
                      .++..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+..+++.++++...+                  
T Consensus       142 ~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  202 (420)
T PRK09528        142 EYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN------------------  202 (420)
T ss_pred             cchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc------------------
Confidence            7777778889999999999998876 589999988776665555544433222111000000                  


Q ss_pred             cccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHH
Q 006712          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (634)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~  389 (634)
                                      ++. .      .++.....+... .             .     + .+.+.............+
T Consensus       203 ----------------~~~-~------~~~~~~~~~~~~-~-------------l-----~-~~~~~~l~l~~~~~~~~~  239 (420)
T PRK09528        203 ----------------ALG-A------NASAVSLKDALA-L-------------L-----K-LPKFWFLVLYVIGVACFY  239 (420)
T ss_pred             ----------------chh-c------ccccccHHHHHH-H-------------c-----c-CCCeEeehHHHHHHHHHH
Confidence                            000 0      000000000000 0             0     0 001111111111111122


Q ss_pred             HHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHH
Q 006712          390 VILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS  469 (634)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~  469 (634)
                      ..+.+....+..+.. .+...+  ....+.+..++.+...+..++.+++.||+++|.           .+.++.++.+++
T Consensus       240 ~~~~~~~~~~~~~~~-~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~l~~~~  305 (420)
T PRK09528        240 DVFDQQFPNFFASFF-ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-----------ALLLAGTIMAVR  305 (420)
T ss_pred             HHHHHHHHHHHHHHH-hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-----------hhHHHHHHHHHH
Confidence            222222222221111 111100  011233444455566677888888888888773           256666666666


Q ss_pred             HHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhH
Q 006712          470 VIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGG  548 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~  548 (634)
                      .+.+++..                       +.++++...++.+++.....+....++.+..|++.++...++ +++...
T Consensus       306 ~~l~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  362 (420)
T PRK09528        306 IIGSGFAT-----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQ  362 (420)
T ss_pred             HHHHHhcc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHH
Confidence            65554432                       445566667778888888888888999999999999987665 677789


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 006712          549 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  608 (634)
Q Consensus       549 ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~  608 (634)
                      +|+.+++.+.+.+.+..+        |          ...|++.+++.++..++.++..+
T Consensus       363 lg~~ig~~~~G~l~~~~G--------~----------~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        363 LGAVFLSTLAGNLYDSIG--------F----------QGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHHHHHHHHhhC--------c----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999998876332        3          45677777777666665555444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.90  E-value=5.6e-20  Score=196.58  Aligned_cols=363  Identities=10%  Similarity=-0.000  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH----HHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA----IFTTIY  146 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~----~~~~~~  146 (634)
                      .+.+.+..++...++....++++.|+. ++|+|.++.+++.+.+.+...++.++.|+++||+ ||+....    ++..++
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence            344555566666666666678888885 6899999999999999999999999999999998 9854332    222211


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .+  ..+..+                            ++.+.+++.|++++.+.+...|...++..|.  .++      
T Consensus        84 ~~--~~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------  125 (382)
T TIGR00902        84 AA--AFSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------  125 (382)
T ss_pred             HH--HHHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------
Confidence            11  122222                            5678888999999999888888888876543  344      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      |++.++......++|..++|.+++++.+.+||+..|++..+..++.++. +...++.   +++++.              
T Consensus       126 ~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~---~~~~~~--------------  187 (382)
T TIGR00902       126 FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLIG-FLIKPTI---PPKDAI--------------  187 (382)
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHcCCCC---CCCccc--------------
Confidence            7888999999999999999999999999999999988765543332222 2221110   000000              


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh-HHHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPACT  385 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~-~~~~~  385 (634)
                                .       .+         +.+...+.                       .+.-..|++...+. .++..
T Consensus       188 ----------~-------~~---------~~~~~~~~-----------------------~~~l~~~~~~~~l~~~~l~~  218 (382)
T TIGR00902       188 ----------P-------ED---------ESQGDSAF-----------------------IALLKNPMNLRFLAAVCLIQ  218 (382)
T ss_pred             ----------c-------cc---------ccccchhH-----------------------HHHHcChHHHHHHHHHHHHH
Confidence                      0       00         00000000                       00001122222111 11112


Q ss_pred             HHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHH
Q 006712          386 IMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAV  465 (634)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l  465 (634)
                      ......+... +.+.+. .+.+.      ...+.+..+..+..++...+    .+++.+|       .+.++.+.+|.++
T Consensus       219 ~~~~~~~~~~-~~~l~~-~g~s~------~~~g~l~~~~~~~~i~~~~~----~~~l~~r-------~g~~~~l~~~~~~  279 (382)
T TIGR00902       219 GAHAAYYGFS-AIYWQA-AGISA------SATGLLWGIGVLAEIIIFAF----SNKLFQN-------CSARDLLLISAIA  279 (382)
T ss_pred             HHHHHHHHHH-HHHHHH-CCCCH------hHHHHHHHHHHHHHHHHHHH----hHHHHhh-------CCHHHHHHHHHHH
Confidence            2222222211 122211 11111      11222223333333344444    4444554       3445667888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-
Q 006712          466 SILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-  544 (634)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-  544 (634)
                      .++..+.+...+                       +.+.++..-++.++..++..+....++.+. |++.+++++++++ 
T Consensus       280 ~~~~~~~~~~~~-----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~  335 (382)
T TIGR00902       280 CVGRWAIIGAIE-----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNA  335 (382)
T ss_pred             HHHHHHHHHhHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHH
Confidence            888877665543                       455566667889999999999999999988 9999999999987 


Q ss_pred             HHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHH
Q 006712          545 LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA  602 (634)
Q Consensus       545 ~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~  602 (634)
                      ...++|..+++.+.|.+.+..+                   ...|++.+++.++++++
T Consensus       336 ~~~g~g~~~g~~~~G~l~~~~g-------------------~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       336 LAMGGLIAIFTAFAGFIYPTLG-------------------AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-------------------HHHHHHHHHHHHHHHHH
Confidence            5678999999999998877433                   14577777777766444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.90  E-value=4.4e-20  Score=197.95  Aligned_cols=392  Identities=7%  Similarity=-0.066  Sum_probs=233.3

Q ss_pred             ccccCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 006712           61 DLSKTGGW---IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY  136 (634)
Q Consensus        61 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr  136 (634)
                      -|..+++.   |.++...+..+...... .+.+.+..++.+ ++|+|.+|.+++.+++.+.+.++.++.|++.||+ |.|
T Consensus        23 ~w~~~~~~~a~r~l~~s~~~f~~~F~~w-~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R  100 (462)
T PRK15034         23 FWENKGKHIARRNLWISVSCLLLAFCVW-MLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGR  100 (462)
T ss_pred             HHhhcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCh
Confidence            34444444   55555444444433333 344445556554 8999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccC
Q 006712          137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF  216 (634)
Q Consensus       137 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~  216 (634)
                      +++.++.++..+.+++++++...    ..                   .++..+++.|++.|++ +...+.....++++|
T Consensus       101 ~v~~~~~ll~~i~~~~~~~a~~~----~~-------------------~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf  156 (462)
T PRK15034        101 RWTVFSTAILIIPCVWLGIAVQN----PN-------------------TPFGIFIVIALLCGFA-GANFASSMGNISFFF  156 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc----cC-------------------CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC
Confidence            99999999988888877764110    00                   4678999999999998 667888999999999


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----h-------------ccchHHHHHHHHHHHHHHHHHHHH
Q 006712          217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~-----~-------------~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      |+++      |+++++++....++|..+++++...+.     .             ..+|+.++++..+..++..++.++
T Consensus       157 p~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        157 PKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             CHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999      999999986556666655544443221     2             234676666666655555544444


Q ss_pred             hccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCC
Q 006712          279 GTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINP  358 (634)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  358 (634)
                      ..+..+   +.+..+.+..++    .|                                                     
T Consensus       231 ~~~~~~---~~~~~~~~~~~v----lk-----------------------------------------------------  250 (462)
T PRK15034        231 GMNDIA---SSRASIADQLPV----LQ-----------------------------------------------------  250 (462)
T ss_pred             hCCCcc---ccccCHHHHHHH----hC-----------------------------------------------------
Confidence            322211   011111110000    00                                                     


Q ss_pred             CCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHH
Q 006712          359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYST  438 (634)
Q Consensus       359 ~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  438 (634)
                                  +.+. .....+.++....+..+......+...  ..+.      ........+-.+...+..|+.+++
T Consensus       251 ------------~~~~-Wllslly~~tFG~fvg~s~~lp~~~~~--~~~~------~~~l~~~~l~~l~~~l~rplgG~L  309 (462)
T PRK15034        251 ------------RLHL-WLLSLLYLATFGSFIGFSAGFAMLAKT--QFPD------VNILRLAFFGPFIGAIARSVGGAI  309 (462)
T ss_pred             ------------CCch-hHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCh------HHHHHHHHHHHHHHHHHHHhhHHH
Confidence                        0011 111111122222222222221222211  1110      011112233456677888999999


Q ss_pred             HhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHH
Q 006712          439 FVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVF  518 (634)
Q Consensus       439 ~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~  518 (634)
                      .||+++++           .+.++.+.+.++...+......                ... .+.+.....++.+.++.++
T Consensus       310 ADRiG~~~-----------vl~~~~i~~~i~~~~~~l~lp~----------------~~~-~~~~~~~~~~~~l~~~~G~  361 (462)
T PRK15034        310 SDKFGGVR-----------VTLINFIFMAIFSALLFLTLPG----------------TGS-GNFIAFYAVFMGLFLTAGL  361 (462)
T ss_pred             HHhcCchH-----------HHHHHHHHHHHHHHHHHHHhcc----------------ccc-cHHHHHHHHHHHHHHHhcc
Confidence            99988773           2455555444443322221100                000 2344444444444455555


Q ss_pred             HHHHHHHHHHhhcch---------------------hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 006712          519 CIVGLLEFLYEEAPD---------------------AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA  577 (634)
Q Consensus       519 ~~~~~~~~~~~~~P~---------------------~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~  577 (634)
                      .+....-.+.+.+|+                     +..|.+.|+......+|+++.|.+.+...+.++           
T Consensus       362 gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-----------  430 (462)
T PRK15034        362 GSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-----------  430 (462)
T ss_pred             cchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-----------
Confidence            555555555555553                     267889999999999999999988887776554           


Q ss_pred             cCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          578 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  610 (634)
Q Consensus       578 ~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~  610 (634)
                            ++...|+.+.+..++++.+.|..+.|.
T Consensus       431 ------~~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        431 ------SPVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             ------CcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                  124567778888888888888777554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.90  E-value=6.4e-20  Score=195.47  Aligned_cols=158  Identities=17%  Similarity=0.215  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 006712           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (634)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~  164 (634)
                      .....+.++.+. +++|+|.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++...+.++        
T Consensus         7 ~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~--------   76 (377)
T PRK11102          7 IDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA--------   76 (377)
T ss_pred             HHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH--------
Confidence            334445556555 57999999999999999999999999999999998 99999999999999988888776        


Q ss_pred             CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 006712          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (634)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~  244 (634)
                                          .+.+.+++.|+++|++.+...+...+++.|.+|+++      |++.+++++....+|..+
T Consensus        77 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~  130 (377)
T PRK11102         77 --------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLL  130 (377)
T ss_pred             --------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHH
Confidence                                567888999999999999999999999999999988      999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       245 ~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      +|.+++++.+..+|++.|++.++..++..+....
T Consensus       131 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        131 APIIGGWLLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999889999998877766555444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.2e-21  Score=211.23  Aligned_cols=378  Identities=15%  Similarity=0.173  Sum_probs=253.2

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 006712           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (634)
Q Consensus        99 ~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (634)
                      +++++.++-+++.+.+..|+.+++..+|+++||+ |-|+++.++.++..+++++..++..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6888999999999999999999999999999998 9999999999999999999998754                    


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Q 006712          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG  257 (634)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~-~g  257 (634)
                            .+.+.+++.|+++|++.|...|+...+.+.+.|+++      |+++.++.+.+..+|.+++-.++|++.+. .|
T Consensus       126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G  193 (466)
T KOG2532|consen  126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG  193 (466)
T ss_pred             ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence                  445578999999999999999999999999999999      99999999999999999999999999988 99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCccccc
Q 006712          258 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH  337 (634)
Q Consensus       258 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~  337 (634)
                      |+++|++.+++.++..++++......+.+.+.-+.                       .                     
T Consensus       194 W~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~-----------------------~---------------------  229 (466)
T KOG2532|consen  194 WPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISE-----------------------K---------------------  229 (466)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCH-----------------------H---------------------
Confidence            99999999988877777766644322211110000                       0                     


Q ss_pred             CCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHh-hHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCcccc
Q 006712          338 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLV-PIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLP  416 (634)
Q Consensus       338 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (634)
                        +.+..+..+...........||+......     .+...+ ..+.-...+++...+.+ .|..+..+++..      .
T Consensus       230 --El~~I~~~k~~~~~~~~~~vP~~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~P-tY~~~VL~f~v~------~  295 (466)
T KOG2532|consen  230 --ELKYIEKGKSEAHVKKKPPVPYKAILTSP-----PVWAIWISAFGGNWGFYLLLTYLP-TYLKEVLGFDVR------E  295 (466)
T ss_pred             --HHHHHHhcccccccCCCCCCCHHHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhCCChh------h
Confidence              00000000000000001245654322111     111111 11122223333333333 344455566544      5


Q ss_pred             CccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccc
Q 006712          417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV--GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFL  494 (634)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i--~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (634)
                      .+.+.+++.+..++...+.+.+.|++.+| ...   .+..+++  .++....+++++.+++....               
T Consensus       296 ~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~~~---------------  356 (466)
T KOG2532|consen  296 TGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTSDE---------------  356 (466)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecCCC---------------
Confidence            67788899999999999999999999887 321   3344444  44555555555554444310               


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 006712          495 TAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPN  574 (634)
Q Consensus       495 ~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~  574 (634)
                            +.+..++ .+.++.+.......+..-......+++.+..+|+.+....++.+++|.+++.+.. .   . +..+
T Consensus       357 ------~~~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~---~-t~~e  424 (466)
T KOG2532|consen  357 ------HRLLAVI-LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D---N-TREE  424 (466)
T ss_pred             ------cchHHHH-HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C---C-CHHH
Confidence                  1112222 2222222222222232233333135889999999999999999999999997763 1   0 2234


Q ss_pred             ccccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 006712          575 WLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  608 (634)
Q Consensus       575 w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~  608 (634)
                      |          ..+|++.+++.++..+++.++..
T Consensus       425 W----------~~VF~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  425 W----------RIVFLIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             H----------HHHHHHHHHHHHHhchheeEeec
Confidence            5          67899999999998888877763

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=5.7e-21  Score=202.67  Aligned_cols=152  Identities=13%  Similarity=0.066  Sum_probs=134.2

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccc
Q 006712           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (634)
Q Consensus        92 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (634)
                      ...++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.++               
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---------------   80 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS---------------   80 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence            34578889999999999999999999999999999999998 99999999999999998888876               


Q ss_pred             cccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 006712          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV  250 (634)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p-~i~~  250 (634)
                                   .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+++++.+.++|..++| ++++
T Consensus        81 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        81 -------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             -------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence                         577889999999999999999999999999999988      99999999999999999999 5677


Q ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          251 YIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       251 ~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      .+.+..+|++.|++.+++.++..+..+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881       142 GIAELYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence            7777789999998877665554444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.89  E-value=1.8e-19  Score=195.86  Aligned_cols=155  Identities=13%  Similarity=-0.031  Sum_probs=126.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      +....+..+....+...+........+| .+++++|.|..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~  100 (438)
T PRK10133         23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            3444556666666666666654444444 56899999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      +.++.+++.....                         ..+...++++|+++|+|.|...+...++++|..|+++     
T Consensus       101 ~~~~~~l~~~~~~-------------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~-----  150 (438)
T PRK10133        101 YALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS-----  150 (438)
T ss_pred             HHHHHHHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh-----
Confidence            9999887642210                         0577899999999999999999999999999866665     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~  253 (634)
                       |...++++.....+|..+||.+++.+.
T Consensus       151 -~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        151 -GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             666788888888999999998877554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.4e-22  Score=207.08  Aligned_cols=182  Identities=18%  Similarity=0.221  Sum_probs=163.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +..++.+.++.++.+++++--|.+.. ...-.++.+|++++..|++.+.|.+...+..|++|+|+||| .||+++.+|..
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence            34456688889999999999987766 45667888999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      ++.+++++++++                            ..++++.+.|.+.|+|.+.+.|..+++++|.||.+.    
T Consensus       107 iW~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----  154 (493)
T KOG1330|consen  107 IWTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----  154 (493)
T ss_pred             HHHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh----
Confidence            999999999998                            678999999999999999999999999999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhccc
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                        |++.++++|+++++|.++|.+++.++....+ |||+|+..+++.++..++.++..++
T Consensus       155 --Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  155 --RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             --hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence              9999999999999999999999999988776 9999999888877766666555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.89  E-value=9.4e-20  Score=195.80  Aligned_cols=390  Identities=11%  Similarity=0.008  Sum_probs=234.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .+|......++...+...+.++++.|+++++|.+..+.+++.+.+.+...++.++.|+++||+ |||+.++.+.+...++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            467788888888898888889999999999999999999999999999999999999999998 9999999887766554


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ...+......+.. .                   ......+++.+++.|++.+...+....+..|..+  +      ++.
T Consensus        82 ~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~  133 (396)
T TIGR00882        82 FAPFFIYVFGPLL-Q-------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF  133 (396)
T ss_pred             HHHHHHHHhhhHH-H-------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence            4332211000000 0                   0123345666788888888888888877766432  2      344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~  309 (634)
                      .++......++|..++|.+++.+.+ .+|++.|++.+++.++..+..+...++.    ++++...            +  
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------------~--  194 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVA------------N--  194 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhh------------c--
Confidence            5566777789999999999998765 5999999988776655544433322211    0000000            0  


Q ss_pred             cccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHH
Q 006712          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (634)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~  389 (634)
                               -.+.              .++..+..+..+.                   .++ |.+...+.........+
T Consensus       195 ---------~~~~--------------~~~~~~~~~~~~~-------------------l~~-~~~~~~~l~~~~~~~~~  231 (396)
T TIGR00882       195 ---------ALGA--------------NASAFSLKLALEL-------------------FRQ-RKFWMFVLYVVGVACVY  231 (396)
T ss_pred             ---------cccc--------------ccCCCCHHHHHHH-------------------HcC-CcHHHHHHHHHHHHHHH
Confidence                     0000              0000000000000                   001 11111111111111111


Q ss_pred             HHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHH
Q 006712          390 VILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS  469 (634)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~  469 (634)
                      ....+....+...... +...+  ....+....+..+...+.....+++.||+++|.           .+.++.++.+++
T Consensus       232 ~~~~~~~~~y~~~~~~-~~~~~--~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-----------~l~~~~~l~~l~  297 (396)
T TIGR00882       232 DVFDQQFANFFTSFFA-TPQQG--TRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-----------ALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHHhcc-ccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------hHHHHHHHHHHH
Confidence            1111111222211110 11100  001223344445555666677777777777663           256666666665


Q ss_pred             HHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHHhH
Q 006712          470 VIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGG  548 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~  548 (634)
                      +......                       .+.+++++..++.+++..........+..+..|++.++++.+. ++....
T Consensus       298 ~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~  354 (396)
T TIGR00882       298 IIGSSFA-----------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQ  354 (396)
T ss_pred             HHHHHhc-----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHH
Confidence            5443322                       1445556666777887777766777788888888888887666 678889


Q ss_pred             HHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 006712          549 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLY  605 (634)
Q Consensus       549 ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~  605 (634)
                      +|+.+++.+.+.+.+..+                  +...|.+.+++.++..++..+
T Consensus       355 lg~~~~~~l~G~l~~~~G------------------~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       355 LAMIFLSTLAGNMYDSIG------------------FQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHhHHHHHHhcc------------------cHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998876433                  356777777776666555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.88  E-value=2.3e-19  Score=218.50  Aligned_cols=361  Identities=14%  Similarity=0.092  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      .+...++..++..+...+....+..++...++.+.  ...+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus        10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~   88 (1146)
T PRK08633         10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV   88 (1146)
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence            44555556666666555555555666666666654  3468899999999999999999999998 99999999987766


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++.+++.++...                         .+.+.++++|+++|++.+...+...++++|.+|+++      |
T Consensus        89 ~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r  137 (1146)
T PRK08633         89 GLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L  137 (1146)
T ss_pred             HHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c
Confidence            665555443210                         457889999999999999999999999999999998      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhc--------c-chHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQME--------H-GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ  298 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~--------~-gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (634)
                      +++++++..+.++|.++||.+++++.+.        . +|++.+.+..+..++..+++.+..++.+.......       
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  210 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-------  210 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-------
Confidence            9999999999999999999999998765        2 34444433333322222222222221110000000       


Q ss_pred             HHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhH
Q 006712          299 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL  378 (634)
Q Consensus       299 v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  378 (634)
                                               +.+         ...........              ++     .....+.+...
T Consensus       211 -------------------------~~~---------~~~~~~~~~~~--------------~~-----~l~~~~~~~~~  237 (1146)
T PRK08633        211 -------------------------DKK---------KYLFPKLLWRN--------------LK-----LLRSDRVLWLA  237 (1146)
T ss_pred             -------------------------ccc---------ccccHHHHHHH--------------HH-----HHhcCcHHHHH
Confidence                                     000         00000000000              00     00000111111


Q ss_pred             h-hHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhH
Q 006712          379 V-PIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ  457 (634)
Q Consensus       379 l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~  457 (634)
                      + ...+...........+ ..+.....+.+..     ...+.+.....+..++...+.+++.|++.++           .
T Consensus       238 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~-----~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~-----------~  300 (1146)
T PRK08633        238 IIGLSYFWFISQLAQANF-PAYAKEVLGLDNT-----FQVQYLLAASAIGIGIGSLLAGRLSGRHIEL-----------G  300 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhh-HHHHHHHhCCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCceEc-----------c
Confidence            1 1111111111111111 1122211111110     0122333334444455555666655554433           2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 006712          458 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  537 (634)
Q Consensus       458 ~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  537 (634)
                      .+.++.++++++++++....                       +.+++++..++.|++.++..+...+++.+.+|++.||
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg  357 (1146)
T PRK08633        301 LVPLGALGLALSLFLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG  357 (1146)
T ss_pred             chhHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh
Confidence            25556666666655554332                       4455666678889999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhh
Q 006712          538 IGSAYAALAGGLGCFAASILNSIIK  562 (634)
Q Consensus       538 ~~~g~~~~~~~ig~~lg~~l~~~v~  562 (634)
                      .++|+.++...+|..+++.+.+.+.
T Consensus       358 ~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        358 KVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877766553

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=1e-18  Score=188.83  Aligned_cols=388  Identities=12%  Similarity=0.030  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGL  150 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GR-r~~i~~~~~~~~~~~  150 (634)
                      ..+.+..++...++-...++++.|+.+++|++.++.|++.+.+.++..++++++|.++||+ || |+++.++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence            3455666666677766668999999999999999999999999999999999999999997 65 778888777776666


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhh--------ccCCCCCcc
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA--------DQFDERSKD  222 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a--------d~~~~~~~~  222 (634)
                      .++.+.                            .+.+.+++.|++.|++.+...+...+...        |......  
T Consensus        84 ~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~--  133 (418)
T TIGR00889        84 FFAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP--  133 (418)
T ss_pred             HHHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--
Confidence            666554                            45677788888888887776666555432        2222222  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHH
Q 006712          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA  302 (634)
Q Consensus       223 ~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  302 (634)
                          |.+.++      .+|.++||.+++.+.....|. +|++.++..++..+..+ ..++.+..+++++.          
T Consensus       134 ----~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~----------  191 (418)
T TIGR00889       134 ----PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKM----------  191 (418)
T ss_pred             ----Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCcccccc----------
Confidence                444444      378888898888884433454 45555544444333322 22221100000000          


Q ss_pred             HHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-
Q 006712          303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-  381 (634)
Q Consensus       303 a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-  381 (634)
                                                     ...+....+..   . .                  .++ +++...... 
T Consensus       192 -------------------------------~~~~~~~~~~~---~-~------------------~k~-~~~~~~~~~~  217 (418)
T TIGR00889       192 -------------------------------SIKVMLGLDAF---I-L------------------FKN-KRMAIFFFFS  217 (418)
T ss_pred             -------------------------------CHHHHhhhhHH---H-H------------------hcC-CCeeeHHHHH
Confidence                                           00000000000   0 0                  000 011111111 


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhhcccCCC-Ccc-ccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHH
Q 006712          382 PACTIMLNVILTEFLTLSVQQAYTMNTHMG-KLK-LPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV  459 (634)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i  459 (634)
                      ++......... .....+... .+.+...+ ++. ...+....+..+..++...+.+++.||+++|+           .+
T Consensus       218 ~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-----------~l  284 (418)
T TIGR00889       218 MLLGAPLQITN-IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-----------VM  284 (418)
T ss_pred             HHHHhHHHHHH-HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HH
Confidence            11111111111 111111111 11111100 000 11233344455556666777777888777663           36


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 006712          460 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG  539 (634)
Q Consensus       460 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~  539 (634)
                      .++.++.++++.++......                  . .+.+.+++..++.++++++..+....++.+.+|++.|+++
T Consensus       285 ~~~~~~~~v~~~l~~~~~~~------------------~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~  345 (418)
T TIGR00889       285 LLSLVAWALRFGFFAYGDPE------------------Y-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASA  345 (418)
T ss_pred             HHHHHHHHHHHHHHHHcCcc------------------h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            77777777766555432100                  0 1233445567788999999999999999999999999999


Q ss_pred             HHHHH-HHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          540 SAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  610 (634)
Q Consensus       540 ~g~~~-~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~  610 (634)
                      +|+.+ ....+|+.+|+.+.+.+.+..+  .+..-          +++..|.+.+++.+++.+.++++.++.
T Consensus       346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g--~~~~~----------~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       346 QGLFTLMCNGFGSLLGYILSGVMVEKMF--AYGTF----------DWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhc--cccCC----------chHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99997 6788999999999998877543  10001          235677888888787777777777654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.87  E-value=5.1e-20  Score=195.26  Aligned_cols=158  Identities=16%  Similarity=0.099  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+...+..+......+...+.++.++++++|+|..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            45566666666777777777777789999999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ++++++                            . +.+.+++.|+++|++.+. .+...++++|.+|+++      |++
T Consensus        82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~  126 (366)
T TIGR00886        82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT  126 (366)
T ss_pred             HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence            888876                            5 778899999999999665 4567889999999998      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA  264 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~----------~~gw~~~f~~  264 (634)
                      ..+++....++|..+++.+++.+..          ..+|++.|++
T Consensus       127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            9999887778888877777665543          2479999844

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.87  E-value=1.5e-18  Score=185.50  Aligned_cols=338  Identities=10%  Similarity=0.018  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchh----HHHHHHHHHHHHHHHHH
Q 006712           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGI  153 (634)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr----~~i~~~~~~~~~~~~~~  153 (634)
                      .+...++...+.++++.|++ ++|.|..+.+++.+++.+...++.+++|+++||+ ||+    +.+.+...+.  ....+
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence            34444556666778888885 5899999999999999999999999999999998 984    3332222211  11111


Q ss_pred             HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH
Q 006712          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (634)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  233 (634)
                      ..+                            ++.+.+++.|++.|++.+...|...++..+.  .++      |++.++.
T Consensus        89 ~~~----------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~  132 (382)
T PRK11128         89 FGA----------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGK  132 (382)
T ss_pred             Hhc----------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcch
Confidence            111                            4678888899999999998888888887775  233      6677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccc
Q 006712          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSS  313 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~  313 (634)
                      .....++|.++||.+++++.+++||+..|++.++..++..+..+ ..++   .+++++.                     
T Consensus       133 ~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~---~~~~~~~---------------------  187 (382)
T PRK11128        133 VRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPT---IMPQGES---------------------  187 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCC---CCCcccc---------------------
Confidence            77778899999999999999999999999877754444333222 1111   0110000                     


Q ss_pred             cccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh-HHHHHHHHHHHH
Q 006712          314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP-IPACTIMLNVIL  392 (634)
Q Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~-~~~~~~~~~~~~  392 (634)
                                  ++.       ..+...++.                       +....|.+...+. .++........+
T Consensus       188 ------------~~~-------~~~~~~~~~-----------------------~i~~~~~~~~~~~~~~l~~~~~~~~~  225 (382)
T PRK11128        188 ------------RQQ-------ESAGWPAWK-----------------------ALLKEPTVWRFLLCVSLLQGSHAAYY  225 (382)
T ss_pred             ------------ccc-------cccccchHH-----------------------HHHcChhHHHHHHHHHHHHHHhHhHH
Confidence                        000       000000000                       0001111211111 111111111111


Q ss_pred             HhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHH
Q 006712          393 TEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIW  472 (634)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~  472 (634)
                      ... ..+..+ .+.+.      ...+.+..+..+..++...+.+++.||+.+|           +.+..+.++.+++++.
T Consensus       226 ~~~-~~~~~~-~g~s~------~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~l~~~~~~~~~~~~~  286 (382)
T PRK11128        226 GFS-AIYWQA-AGYSA------STIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----------DLLLLSAICGVVRWGL  286 (382)
T ss_pred             HHH-HHHHHH-CCCCH------hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHHHHHHHHHHH
Confidence            111 112111 11111      1122333334444444445555555544433           4466777777776655


Q ss_pred             HHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhHHHH
Q 006712          473 AGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGC  551 (634)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~  551 (634)
                      +...+                       +.+++++..++.|+++++..+....++.+. |++.+++++++.+ ....+|.
T Consensus       287 ~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~  342 (382)
T PRK11128        287 MGSTT-----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSI  342 (382)
T ss_pred             HHhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHH
Confidence            54332                       445566677788999999999999998887 4555688899886 5567888


Q ss_pred             HHHHHHHHHhhccc
Q 006712          552 FAASILNSIIKSVT  565 (634)
Q Consensus       552 ~lg~~l~~~v~~~~  565 (634)
                      .+|+.+.|.+.+..
T Consensus       343 ~ig~~i~G~l~~~~  356 (382)
T PRK11128        343 AIMTVLSGFLYQHL  356 (382)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887743

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.87  E-value=4.5e-18  Score=187.52  Aligned_cols=383  Identities=11%  Similarity=0.058  Sum_probs=232.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cchhHH-HHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAIFTT  144 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~----~GRr~~-i~~~~~  144 (634)
                      ..+..+...+...+..+.....++.|+.+ .|.|.++.+.. +..... +++.+++|+++||+    +||||. ++++.+
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            35666666677777777777777888654 59999888886 223333 36889999999995    288886 556666


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++...+++..      |.                   .+.+.+.+.+++.+++.+...+...++..|++|+++    
T Consensus        90 ~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~----  140 (491)
T PRK11010         90 LLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE----  140 (491)
T ss_pred             HHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh----
Confidence            6666666665531      11                   467788888999999999999999999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA  303 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~-~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a  303 (634)
                        |+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..+.. ++.+..+++.+..          
T Consensus       141 --rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~~~~----------  207 (491)
T PRK11010        141 --RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVPKTL----------  207 (491)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccccch----------
Confidence              9999999999999999999999999988 4699999999887665554443332 2110000000000          


Q ss_pred             HhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHH
Q 006712          304 FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPA  383 (634)
Q Consensus       304 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~  383 (634)
                                                         .+ ...+              ++++...+  +....+  .+....
T Consensus       208 -----------------------------------~~-~~~~--------------~l~~~~~~--~~~~~~--ll~~~l  233 (491)
T PRK11010        208 -----------------------------------EQ-AVVA--------------PLRDFFGR--NNAWLI--LLLIVL  233 (491)
T ss_pred             -----------------------------------hh-hHHH--------------HHHHHHcC--cCHHHH--HHHHHH
Confidence                                               00 0000              00000000  001111  111111


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCcccc-chhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHH
Q 006712          384 CTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMP-VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIG  462 (634)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G  462 (634)
                      ............ ..+..+..+.+..      ..+.+. ....+..++...+.+++.||+++|.           .+.++
T Consensus       234 ~~~~~~~~~~~~-~~~l~~~~G~s~~------~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-----------~l~i~  295 (491)
T PRK11010        234 YKLGDAFAMSLT-TTFLIRGVGFDAG------EVGLVNKTLGLLATIVGALYGGILMQRLSLFR-----------ALMIF  295 (491)
T ss_pred             HHHHHHHHHHHH-HHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHH
Confidence            111111222222 2222222222211      122222 2333456677778888888887652           23334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 006712          463 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY  542 (634)
Q Consensus       463 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~  542 (634)
                      .++.+++.+.+......                  . .+.+.+....++..+..++..+...++..+..|++.+++..|+
T Consensus       296 ~~l~~l~~l~~~~l~~~------------------~-~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl  356 (491)
T PRK11010        296 GILQGVSNAGYWLLSIT------------------D-KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFAL  356 (491)
T ss_pred             HHHHHHHHHHHHHHHhc------------------c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            44433333222211100                  0 1333344444555555566667778888899999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHh
Q 006712          543 AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS  606 (634)
Q Consensus       543 ~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~  606 (634)
                      .+....+|..+++.+.+.+.+..+                  +..+|.+.+++++++++..+++
T Consensus       357 ~~s~~~lg~~~~~~~~G~l~~~~G------------------~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        357 LSALSAVGRVYVGPVAGWFVEAHG------------------WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888887766332                  3567777777777776666655

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.87  E-value=3.4e-19  Score=216.66  Aligned_cols=341  Identities=14%  Similarity=0.016  Sum_probs=198.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH--HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCc
Q 006712          105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA  182 (634)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (634)
                      ...+++.+++.+...++.+++|+++||+ |||+++.....+  .........+..                         
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------------------------  105 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------------------------  105 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            4578888899999999999999999998 999986442222  221211111110                         


Q ss_pred             cchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 006712          183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (634)
Q Consensus       183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f  262 (634)
                        .+++.++++|+++|++.+...|...+++.|++|+++      |++++++.+.+.++|.++||.++|++....+|++.|
T Consensus       106 --~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814        106 --NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             --hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence              467899999999999999999999999999999998      999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcch
Q 006712          263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR  342 (634)
Q Consensus       263 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  342 (634)
                      ++.+++.++++++.+...+. +..++.....                                           ..   .
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------------------------~~---~  210 (1140)
T PRK06814        178 ALLMGIAVLGWLASLFIPKT-GNAAPDLKID-------------------------------------------RN---I  210 (1140)
T ss_pred             HHHHHHHHHHHHHHhhCCCC-CCCCCCCeec-------------------------------------------cc---h
Confidence            55444444443333322111 1100000000                                           00   0


Q ss_pred             HHHHHHhhhccccCCCCCCccccchhhhHHHHHHhH-hhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCcccc
Q 006712          343 CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL-VPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMP  421 (634)
Q Consensus       343 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (634)
                      ..+.....           +     .....+.+... +..++....+.....+.+ .+..+..+.+      ....+.+.
T Consensus       211 ~~~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~------~~~~g~~~  267 (1140)
T PRK06814        211 IRSTITLL-----------K-----YAKADKRIWLAILGISWFWLVGAVVLSQLP-LLAKETLGGD------ENVATLFL  267 (1140)
T ss_pred             HHHHHHHH-----------H-----HHhcCchHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHcCCc------hHHHHHHH
Confidence            00000000           0     00001111111 111111122222222222 2222222211      11233344


Q ss_pred             chhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcch
Q 006712          422 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  501 (634)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  501 (634)
                      ....+..++...+.+++.++..++.           .+..+.++.+++.+.+.+.................  -... .+
T Consensus       268 ~~~~~g~~ig~~~~g~l~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~  333 (1140)
T PRK06814        268 AVFSVGVAVGSFLASKLSEGRITLL-----------YVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV--FLSK-RH  333 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeee-----------eehHHHHHHHHHHHHHHhcccccccccccccchhh--hhcc-cc
Confidence            4555566666666666654333221           13333333333333222210000000000000000  0000 13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 006712          502 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  563 (634)
Q Consensus       502 ~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~  563 (634)
                      .+.+++.++++|++.++..++..+.+.+.+|++.+|+++|+.++...++..+++.+.+.+..
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777888999999999999999999999999999999999999999999999988754

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=3.5e-18  Score=187.54  Aligned_cols=359  Identities=14%  Similarity=0.065  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      +..+....++.+++.......++- +..++.-|+...+++.....+...+..+++|.++||+ .|||+++.+-++..+..
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~w-lv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAW-LVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVA   89 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHH
Confidence            333445555555555433333333 3345667899999999999999999999999999998 99999999998877665


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      +.+++....    ..                   .+.+.+++.-++.|++.+...|...+++.|+.|+++      ...+
T Consensus        90 ~~L~~l~~~----~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A  140 (524)
T PF05977_consen   90 LLLAVLAFF----GL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAA  140 (524)
T ss_pred             HHHHHHHHh----Cc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHH
Confidence            555543221    00                   467788888899999999999999999999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhccc
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAA  310 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~  310 (634)
                      .++.....|+...+||.++|.+....|-.+.|.+.++..++.++.+...++....++...+   .+.+-+          
T Consensus       141 ~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e---~~~~~l----------  207 (524)
T PF05977_consen  141 NALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPRE---RFFSAL----------  207 (524)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchh---hhhhhH----------
Confidence            9999999999999999999999888888889998887766655444333222111100000   000000          


Q ss_pred             ccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-HHHHHHHH
Q 006712          311 FSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLN  389 (634)
Q Consensus       311 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~~~~~  389 (634)
                                                       .+.-..                   +...+.+...+.. +++.....
T Consensus       208 ---------------------------------~~G~ry-------------------v~~~~~l~~~l~~~~~~~l~~~  235 (524)
T PF05977_consen  208 ---------------------------------REGLRY-------------------VRSSPPLRSVLLRSFLFNLFAS  235 (524)
T ss_pred             ---------------------------------HHHHHH-------------------HhcchHHHHHHHHHHHHHHhhh
Confidence                                             000000                   0000111111111 11111111


Q ss_pred             HHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHH
Q 006712          390 VILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS  469 (634)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~  469 (634)
                      ... .....+..+..+.+..      .-+.+.....+..++..    .+..++.+|       .+..+.+..+.++.+++
T Consensus       236 a~~-aLlPl~a~~~l~~~a~------~yGll~a~~gvGai~Ga----l~~~~l~~~-------~~~~~lv~~~~~~~a~~  297 (524)
T PF05977_consen  236 AVW-ALLPLFARDVLGGGAS------GYGLLLAAFGVGAILGA----LLLPRLRRR-------LSSRRLVLLASLLFALA  297 (524)
T ss_pred             HHH-HhhhHHHHHHhCCcHH------HHHHHHHHHHHHHHHHH----HHHHHhhcc-------cCcchhhHHHHHHHHHH
Confidence            111 1111222221111110      11122222223333333    333333333       23334456677777776


Q ss_pred             HHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHH
Q 006712          470 VIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGL  549 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i  549 (634)
                      ++.+++..                       +.+...+.+++.|++.....+..++.+.+..|+++||++++++.+....
T Consensus       298 ~~~lal~~-----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g  354 (524)
T PF05977_consen  298 LLLLALSP-----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFG  354 (524)
T ss_pred             HHHHhcch-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHH
Confidence            66655442                       4566667778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccC
Q 006712          550 GCFAASILNSIIKSVTG  566 (634)
Q Consensus       550 g~~lg~~l~~~v~~~~~  566 (634)
                      +..+|.++.|.+.+..+
T Consensus       355 ~~~lGsll~G~la~~~g  371 (524)
T PF05977_consen  355 GMPLGSLLWGFLADHFG  371 (524)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999998877543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.86  E-value=4.3e-19  Score=189.32  Aligned_cols=345  Identities=16%  Similarity=0.134  Sum_probs=199.9

Q ss_pred             HHHHHHHHHhC--CChhHHHHHHHH--HHH---HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 006712           91 NMVTFMFYVMH--KSFADSSNAVNN--FLG---ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (634)
Q Consensus        91 ~l~~yl~~~~~--~s~~~~~~~~~~--~~~---~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (634)
                      +...++.++..  .++++.+...+.  +..   ...++.++.|+++||+ |||++++++.++..++.++++++.......
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~   92 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATIG   92 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence            34555555544  334444444332  333   2346789999999998 999999999999999988888762110000


Q ss_pred             CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 006712          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (634)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  243 (634)
                                          ......++++|+++|++.+...+...++++|.+|+++      |++..++.+.+..+|..
T Consensus        93 --------------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~  146 (394)
T TIGR00883        93 --------------------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLL  146 (394)
T ss_pred             --------------------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHH
Confidence                                0112367889999999999999999999999999998      99999999999999999


Q ss_pred             HHHHHHHHHh--------hccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccc
Q 006712          244 VAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE  315 (634)
Q Consensus       244 ~~p~i~~~l~--------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~  315 (634)
                      +++.++..+.        +..+|++.|++.++..++..+..... ++   .++..+.            +++        
T Consensus       147 i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~------------~~~--------  202 (394)
T TIGR00883       147 LAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNL-EE---TPVFEKA------------QEK--------  202 (394)
T ss_pred             HHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhc-CC---ChhHHHH------------Hhc--------
Confidence            9998776653        35689999988766554443332111 11   0000000            000        


Q ss_pred             cccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHH-HHHHHHHHHHHh
Q 006712          316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP-ACTIMLNVILTE  394 (634)
Q Consensus       316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~-~~~~~~~~~~~~  394 (634)
                               .+           ...                  .+++...   ...++.+....... .....++.....
T Consensus       203 ---------~~-----------~~~------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (394)
T TIGR00883       203 ---------HK-----------KKR------------------GPIRETL---TKHRKPFLLGLGLVIATTTTFYLITTY  241 (394)
T ss_pred             ---------cc-----------ccc------------------CCHHHHH---HhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     00           000                  0000000   00111121111111 111111111111


Q ss_pred             hhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHH-HHHHHHHHHHHHH
Q 006712          395 FLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG-IGLAVSILSVIWA  473 (634)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~-~G~~l~~~~~~~~  473 (634)
                      . ..+..+..+.+..      ..+.......+..++..++.+++.||++||..           +. .+.+....+....
T Consensus       242 ~-~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-----------~~~~~~~~~~~~~~~~  303 (394)
T TIGR00883       242 L-PTYLTQTLGLSAN------SALLVLMLSLILFFITIPLSGALSDRIGRRPV-----------LIIFTVLAALLAVPLL  303 (394)
T ss_pred             H-HHHHHHhcCCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-----------HHHHHHHHHHHHHHHH
Confidence            1 1222121122111      12233344555667777888888888876631           22 2222222221121


Q ss_pred             HHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHhHHHHH
Q 006712          474 GIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCF  552 (634)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~  552 (634)
                      .....                   . .+.+.++...++.+++.+...+...+++.+.+|++.|++++++. +..+.+|..
T Consensus       304 ~~~~~-------------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~  363 (394)
T TIGR00883       304 MALLD-------------------S-GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGG  363 (394)
T ss_pred             HHHhc-------------------C-CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhh
Confidence            11110                   0 13344445566778888888889999999999999999999984 566678888


Q ss_pred             HHHHHHHHhhccc
Q 006712          553 AASILNSIIKSVT  565 (634)
Q Consensus       553 lg~~l~~~v~~~~  565 (634)
                      +++.+.+.+.+..
T Consensus       364 ~~p~~~g~l~~~~  376 (394)
T TIGR00883       364 FAPYIAAALVAMT  376 (394)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999887643

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=8.4e-19  Score=190.77  Aligned_cols=355  Identities=14%  Similarity=0.117  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchhH-HHHHHHHHHHHHHHHHH
Q 006712           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT  154 (634)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~---~GRr~-~i~~~~~~~~~~~~~~~  154 (634)
                      +...+....+..+++.|+++++|+++.+++++.++..+...+..|+.|+++||.   +|||| .++++.++..++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            445556666778899999999999999999999999999999999999999983   38754 67777777777777666


Q ss_pred             HhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC-CCCcchhhhhhhHHHH
Q 006712          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDRFFNF  233 (634)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~r~~~~~~  233 (634)
                      ....   ...                   ......+++.+++.+++.+.......++.+|+.+ +++      |++..++
T Consensus        89 ~~~~---~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~  140 (437)
T TIGR00792        89 TTPD---FSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF  140 (437)
T ss_pred             hCCC---CCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence            5411   000                   0235666777788888888888888889999885 455      9999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-------hccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          234 FYLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i~~~l~-------~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      ...+.++|..+++.+.+.+.       +..+|++.+++.+++..+..+..+...++.+++.++.+               
T Consensus       141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~---------------  205 (437)
T TIGR00792       141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI---------------  205 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc---------------
Confidence            88888888877776655543       24579998887777655555444333222110000000               


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTI  386 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~  386 (634)
                                                     +++.+..+.-+                   .....|.+...+..   ..
T Consensus       206 -------------------------------~~~~~~~~~~~-------------------~l~~~~~~~~~~~~---~~  232 (437)
T TIGR00792       206 -------------------------------EKKLSLKQIFK-------------------ALFKNDQLLILCLA---YL  232 (437)
T ss_pred             -------------------------------ccCCCHHHHHH-------------------HHhCCHHHHHHHHH---HH
Confidence                                           00000000000                   00001111111111   11


Q ss_pred             HHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHH
Q 006712          387 MLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVS  466 (634)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~  466 (634)
                      ..+.............   .....+. ....+.+..+..+..++..++.+++.||+++|.           .+.+|.++.
T Consensus       233 ~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-----------~~~~~~~~~  297 (437)
T TIGR00792       233 FYNLAFNIKNGVQVYY---FTYVLGD-PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-----------LFAGGILLM  297 (437)
T ss_pred             HHHHHHHHHcchhhee---EeeecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----------HHHHHHHHH
Confidence            1111111111111110   0001110 111122334445666777788888887777663           356677666


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhhHHHH
Q 006712          467 ILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIG  539 (634)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~  539 (634)
                      +++++.+.+..                      .+.+.+++..++.+++.+...+..+++..+..|       ++.+|.+
T Consensus       298 ~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  355 (437)
T TIGR00792       298 VLGYLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLV  355 (437)
T ss_pred             HHHHHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHH
Confidence            66665544322                      123444556677888888888888999888765       5678999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhhcccC
Q 006712          540 SAYAALAGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       540 ~g~~~~~~~ig~~lg~~l~~~v~~~~~  566 (634)
                      .|++++...+|..+++.+.+.+.+..+
T Consensus       356 ~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       356 YSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999998877544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.85  E-value=7.1e-26  Score=247.49  Aligned_cols=398  Identities=17%  Similarity=0.128  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccch
Q 006712          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (634)
Q Consensus       106 ~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (634)
                      ..++..+.+.++..++.+++|+++||+ |||++++++.++..++.++..++...                         .
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~  100 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------------N  100 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence            467889999999999999999999998 99999999999999999998887110                         1


Q ss_pred             hHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---ccchHHHH
Q 006712          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF  262 (634)
Q Consensus       186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~---~~gw~~~f  262 (634)
                      +...+.++|+++|++.|+..+..+.++.|..|++.      |+...++.+.+..+|..++..++..+..   ..+||+.+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            78899999999999999999999999999999999      9999999999889998888866544433   24599888


Q ss_pred             HHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcch
Q 006712          263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR  342 (634)
Q Consensus       263 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  342 (634)
                      ++..+..++.++....                                .||||+| +..+++.+++.+..++.++.+..+
T Consensus       175 ~~~~~~~l~~~~~~~~--------------------------------~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~~  221 (451)
T PF00083_consen  175 IFGAIPSLLVLLLRFF--------------------------------LPESPRW-LLSKGRDEEAEKVLRKLRGKEIED  221 (451)
T ss_pred             cccccccccccccccc--------------------------------cccccce-eccccccccccccccccccccccc
Confidence            8777665443332221                                6999999 888888888877776644332211


Q ss_pred             -HHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHH-HHHHHHhhhhHHHHHHhhcccCCCCccccCccc
Q 006712          343 -CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIM-LNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCM  420 (634)
Q Consensus       343 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (634)
                       ..+.......+.++....|+.+...+. .+++++..+.+...+.. .+....++.+.+... .+.+..        -..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--------~~~  291 (451)
T PF00083_consen  222 EEIEEIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--------FLA  291 (451)
T ss_pred             ccccccccccccccccceeeeecccccc-ccccccccccccccccccccccccccccccccc-cccccc--------ccc
Confidence             011100000000000122333322211 12333322222222211 111111111111111 111111        111


Q ss_pred             cchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcCccccccCCCCc
Q 006712          421 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAG-IFERYRRNYAISHGYEFSFLTAMPD  499 (634)
Q Consensus       421 ~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  499 (634)
                      ..+..+..++...+...+.|+++||..           +..|.++++++++.++ .....      .+    .   ... 
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~GRr~~-----------~i~~~~~~~~~~~~~~~~~~~~------~~----~---~~~-  346 (451)
T PF00083_consen  292 TLILGLVNFLGTLLAIFLIDRFGRRKL-----------LIIGLLLMAICSLILGIIFFLG------VS----S---SSW-  346 (451)
T ss_pred             ccccccccccccccccccccccccccc-----------cccccccccccccccccccccc------cc----c---ccc-
Confidence            222223333344444477788888743           5566666666655553 11100      00    0   000 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccC
Q 006712          500 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  579 (634)
Q Consensus       500 ~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~  579 (634)
                      .+...++...+..........+..+.+..|.+|.+.|+.++|+.....++++.+++.+.+.+.+..+       .     
T Consensus       347 ~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-------~-----  414 (451)
T PF00083_consen  347 WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG-------G-----  414 (451)
T ss_pred             cccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------c-----
Confidence            1222222222222233334456677888999999999999999999999999998888766543211       1     


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHhhccceeccccCCCCc
Q 006712          580 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGND  621 (634)
Q Consensus       580 ~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~  621 (634)
                            ...|++.++++++..++.+++.+++|++++||++++
T Consensus       415 ------~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  415 ------WGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             ------cccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence                  145777788888888888899999999998877654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00896 CynX cyanate transporter

Probab=99.85  E-value=1.7e-18  Score=183.13  Aligned_cols=326  Identities=13%  Similarity=0.093  Sum_probs=209.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccc
Q 006712           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (634)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (634)
                      .+...+.+++|+|.++++++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+ .+              
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~--------------   84 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA--------------   84 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh--------------
Confidence            344567889999999999999999999999999999999998 99999999988877776665 33              


Q ss_pred             ccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006712          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (634)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~  250 (634)
                                    .+.+.+++.|++.|++.+...+....+..|.+| ++      |++.+++++.+.++|..+++.+++
T Consensus        85 --------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~  143 (355)
T TIGR00896        85 --------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATV  143 (355)
T ss_pred             --------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence                          456788899999999999988888888989886 46      999999999999999999999998


Q ss_pred             HHhhcc--chHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccc
Q 006712          251 YIQMEH--GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSA  328 (634)
Q Consensus       251 ~l~~~~--gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~  328 (634)
                      .+.+..  +||+.|.+.++..++..... .  ++.++++++..                       +.            
T Consensus       144 ~l~~~~~~~w~~~f~~~~~~~~~~~~~~-~--~~~~~~~~~~~-----------------------~~------------  185 (355)
T TIGR00896       144 PLAQHSGGHWQQALAWWALPALLALLAW-I--PQVRRRVAANQ-----------------------TT------------  185 (355)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHH-h--hhhccccCCCC-----------------------CC------------
Confidence            887664  38988876655433332221 1  11110000000                       00            


Q ss_pred             cCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-HHHHHHHHHHHHhhhhHHHHHHhhcc
Q 006712          329 IKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVILTEFLTLSVQQAYTMN  407 (634)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (634)
                                ..                 ..+++..     ++ +........ .+....++....+.+. +... .+.+
T Consensus       186 ----------~~-----------------~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~lp~-~~~~-~g~~  230 (355)
T TIGR00896       186 ----------TR-----------------LTPVRIW-----RS-PLAWQVTVFFGLQSGLYYSLIGWLPA-ILIS-HGAS  230 (355)
T ss_pred             ----------CC-----------------CCCchhh-----cC-HhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-cCCC
Confidence                      00                 0000000     01 111111111 1111222222222211 2111 1221


Q ss_pred             cCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 006712          408 THMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISH  487 (634)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~  487 (634)
                      .      ...+.+.....+..++..++.+++.||+.+|.          +.+.++.++.+++.+.+.....         
T Consensus       231 ~------~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~----------~~~~~~~~~~~~~~~~~~~~~~---------  285 (355)
T TIGR00896       231 A------ATAGSLLALMQLAQAASALLIPALARRVKDQR----------GIVAVLAVLQLVGLCGLLFAPM---------  285 (355)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----------HHHHHHHHHHHHHHHHHHHhhh---------
Confidence            1      12334445556666777778888777764331          2245666666666655544321         


Q ss_pred             CccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccC
Q 006712          488 GYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       488 ~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~  566 (634)
                                   +..++  ..++.|++.+...+...+...+..+ ++.++..+++.+....++..+++.+.+.+.+.++
T Consensus       286 -------------~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       286 -------------HGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             -------------hHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                         11111  2456789999888888777765554 5778999999999899999999999998877554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.7e-18  Score=177.56  Aligned_cols=393  Identities=13%  Similarity=0.063  Sum_probs=260.5

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 006712           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (634)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~  143 (634)
                      ++.++|.++...... ...+....+...+.+++.+++|+|+.|.++++.+-.+...+..++-|++.||+ |-|++..++.
T Consensus         9 k~~~~~~L~~S~~af-~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~   86 (417)
T COG2223           9 KRIARRNLWLSTLAF-DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSM   86 (417)
T ss_pred             ccchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHH
Confidence            345566555554444 44444445667788899999999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcch
Q 006712          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (634)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (634)
                      ++..+-.+..+++...                         .+.+.+++..++.|++.+. .+...++++..||+++   
T Consensus        87 ~l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~---  137 (417)
T COG2223          87 LLLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK---  137 (417)
T ss_pred             HHHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcccce-ehcccccccccCChhh---
Confidence            9988888888877321                         3457899999999999554 6788889999999999   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHH
Q 006712          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL  300 (634)
Q Consensus       224 ~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  300 (634)
                         +|.+++++. ..|+|..+...++..+....+   |+....+..+..++..+.+++..+...+.++..++..      
T Consensus       138 ---qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~------  207 (417)
T COG2223         138 ---QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL------  207 (417)
T ss_pred             ---hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc------
Confidence               999999999 999999999999988888888   9988888888887777776665544322111111000      


Q ss_pred             HHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh
Q 006712          301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP  380 (634)
Q Consensus       301 ~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~  380 (634)
                                 |                                +.-                   +.+...+....+..
T Consensus       208 -----------~--------------------------------~~~-------------------~~v~~~~~~W~lsl  225 (417)
T COG2223         208 -----------P--------------------------------AQL-------------------KAVFSNKDTWLLSL  225 (417)
T ss_pred             -----------h--------------------------------hHH-------------------HHHhcCcchHHHHH
Confidence                       0                                000                   00000111111211


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHH
Q 006712          381 IPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG  460 (634)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~  460 (634)
                      +-......++.+..+...+.......+      ....+.+....++...+..|+.+++.||++.+..           +.
T Consensus       226 lY~~tFG~Fvgfs~~l~~~~~~~fg~~------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-----------~~  288 (417)
T COG2223         226 LYFATFGGFVGFSAYLPMYLVTQFGLS------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-----------TL  288 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-----------HH
Confidence            222222223333222222222112222      2334466667777888889999999999987732           45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 006712          461 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS  540 (634)
Q Consensus       461 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~  540 (634)
                      +.+..++++..+.......     ..+          + .+....+..++..++..+..+....-.+...+| ++.|.+.
T Consensus       289 ~~f~~~~~~~~~l~~~~~~-----~~~----------~-~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~  351 (417)
T COG2223         289 AVFVGMALAAALLSLFLTG-----FGH----------G-GSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVT  351 (417)
T ss_pred             HHHHHHHHHHHHHHccccc-----ccc----------C-cchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHH
Confidence            5555566655555443211     000          1 133333333343444444444444555555565 4688999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          541 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  610 (634)
Q Consensus       541 g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~  610 (634)
                      |+.....++|++.-|...+...+.++                 .+...|+++..+.+++.+..+..+.|.
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg-----------------~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTG-----------------SYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998887665                 134678888888888888887777654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.84  E-value=8.7e-19  Score=195.24  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=128.3

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccccc
Q 006712           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (634)
Q Consensus        97 ~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (634)
                      .+.++.+.....+..+++.++..+|++++|++|||+ |||+++++++++.+++.++.+++                    
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------  168 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------  168 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence            355677888999999999999999999999999995 99999999999999999999988                    


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (634)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~  256 (634)
                              .++..+++.|++.|++.++...+...+++|+++++.      |+...++ ......++.++|.+++++..  
T Consensus       169 --------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--  231 (521)
T KOG0255|consen  169 --------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--  231 (521)
T ss_pred             --------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--
Confidence                    789999999999999999999999999999999999      9999999 77888888889989998877  


Q ss_pred             chHHHHHHHHHHHHHHHHH
Q 006712          257 GWGSAFGALAIAMGISNML  275 (634)
Q Consensus       257 gw~~~f~~~~~~~~i~~~~  275 (634)
                      +||+.+++..+..++.++.
T Consensus       232 ~Wr~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  232 DWRWLFWIISIPSGLFLLL  250 (521)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            8999999988776666555

>TIGR00901 2A0125 AmpG-related permease

Probab=99.83  E-value=1.6e-17  Score=175.71  Aligned_cols=157  Identities=13%  Similarity=0.124  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHHhhhhccc
Q 006712           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF  162 (634)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~----~GRr~~i-~~~~~~~~~~~~~~~~~~~~~~~  162 (634)
                      +.......+.+++|+|.++.++.... .+...+ .+++|+++||+    +||||.+ +.+.++..+.+..+++..     
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~-----   78 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV-----   78 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence            33444555667889999999998655 333444 88999999997    4899975 556666665555554431     


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 006712          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (634)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~  242 (634)
                       +.                   .+.+.+....++.+++.+...+...++++|++|+++      |+++.++...+.++|.
T Consensus        79 -~~-------------------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~  132 (356)
T TIGR00901        79 -PS-------------------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM  132 (356)
T ss_pred             -cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence             00                   345566666677888888889999999999999988      9999999999999999


Q ss_pred             HHHHHHHHHHhhccc--------hHHHHHHHHHHHHHHHHHHH
Q 006712          243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       243 ~~~p~i~~~l~~~~g--------w~~~f~~~~~~~~i~~~~~~  277 (634)
                      .+++.+++++....+        ||..|++.++..++..+..+
T Consensus       133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999888777        99999988876666554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.82  E-value=2.8e-16  Score=169.21  Aligned_cols=166  Identities=15%  Similarity=0.119  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc----cchhH-HHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAGL  150 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~----~GRr~-~i~~~~~~~~~~~  150 (634)
                      ...+...+.+.-....+|.|+.+ .|+|.++.+++......  .+..+++|+++||+    +|||| .++++.++..++.
T Consensus         6 ~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          6 LLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            34445555555566678889885 59999999998666655  68899999999996    27765 6777777777777


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      ..+++..      +.                   .+.+.+++..++.+++.+...+...+++.|.+|+++      |+++
T Consensus        83 ~~l~~~~------~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~  131 (402)
T PRK11902         83 AAMAFCP------PH-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAG  131 (402)
T ss_pred             HHHHhcC------cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHH
Confidence            7666541      00                   356666767677788888889999999999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~-~gw~~~f~~~~~~~~i~~~~  275 (634)
                      .++...+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       132 ~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        132 AAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888875 49999999877765544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.82  E-value=1.9e-16  Score=170.70  Aligned_cols=172  Identities=11%  Similarity=0.023  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++.+...-+...+.. ++...+...+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||+++.++.+++.++.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            444554445544444 4555556677899999999999999999999999999999999998 99999999999999988


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .++..+..                         ..+.+.+++.|++.|+|.|...+...+++.+..|+++      |++.
T Consensus        83 ~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~  131 (410)
T TIGR00885        83 FLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRR  131 (410)
T ss_pred             HHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHH
Confidence            77654311                         0467889999999999999999999999999999888      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~--------------------------~~gw~~~f~~~~~~~~i~~~~  275 (634)
                      .++.+...++|..++|.+++.+..                          ..+||++|++.++..++..++
T Consensus       132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887642                          236999998777655444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.81  E-value=2.9e-16  Score=169.77  Aligned_cols=442  Identities=12%  Similarity=0.018  Sum_probs=256.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----ccchhHHHHHH-HHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TTI  145 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr----~~GRr~~i~~~-~~~  145 (634)
                      ++.+....+...+++-...++++.|+ +++|.+....+++..+..+...+..|+.|++|||    + ||||.++++ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            56666666777788766677777765 6799999999999999999999999999999995    7 999998875 555


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++..+++++.....+...          . ..+.........++++..+..++....++...++++|++|+++++   
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~---  149 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR---  149 (477)
T ss_pred             HHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH---
Confidence            55555666554221110000          0 000000012234455555667788888889999999999988721   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH--hhcc-------------chHHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QMEH-------------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG  290 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l--~~~~-------------gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~  290 (634)
                       ++.+.++.....++|..+|+.++++.  .+..             +.++.|++.+++.++..++..+..++.+..++++
T Consensus       150 -~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~  228 (477)
T TIGR01301       150 -TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD  228 (477)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc
Confidence             36788999999999999999988865  2111             4678898888777776666555444432111100


Q ss_pred             CcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhh
Q 006712          291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE  370 (634)
Q Consensus       291 ~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  370 (634)
                      .+                    +   . -++..  +         ++.....+.+.                  .+.-+.
T Consensus       229 ~~--------------------~---~-~~~~~--~---------~~~~~~~~~~i------------------~~~~~~  255 (477)
T TIGR01301       229 FI--------------------N---S-EAAPP--S---------KHGEEAFFGEL------------------FGAFKY  255 (477)
T ss_pred             ch--------------------h---h-hcccc--c---------ccchhhhHHHH------------------HHHHHH
Confidence            00                    0   0 00000  0         00000000000                  000001


Q ss_pred             HHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhc-ccCCC-CccccCccccchhHHHHHHHHHHHHHHHhhhhccccC
Q 006712          371 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTM-NTHMG-KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG  448 (634)
Q Consensus       371 ~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~  448 (634)
                      --|.+.++....++..+.|..+..+.+.++-+...- +..-. .++- ...+.....+...+...+++.+..++.|+...
T Consensus       256 mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~-gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~  334 (477)
T TIGR01301       256 LPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDD-GVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA  334 (477)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            112333444445556666666666666655432211 11000 0000 00001111111122222444555556665321


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhc-CccccccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHH
Q 006712          449 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRN--YAISH-GYEFSFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLL  524 (634)
Q Consensus       449 ~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~s-~~~lv~~~~l~g~g~~~~~~~~~  524 (634)
                            ++..-.++.++.+++++...++.....+  ....+ +.      ..+... .+..+..+.+.|+.-+..+..-+
T Consensus       335 ------~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~Gi~~A~~~siPf  402 (477)
T TIGR01301       335 ------GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGES------LPPPTGIKASALIVFAILGIPLAITYSIPF  402 (477)
T ss_pred             ------chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc------cCcchhhHHHHHHHHHHhhHHHHHHHHHhH
Confidence                  1122367888888888777655421000  00000 00      011012 36667788889999999999999


Q ss_pred             HHHHhhcch--hhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHH
Q 006712          525 EFLYEEAPD--AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCA  602 (634)
Q Consensus       525 ~~~~~~~P~--~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~  602 (634)
                      +.+.+..|+  +..|..+|+.|.+..+...+.++..+.+.+..+  .              +....+.+.++..+++.+.
T Consensus       403 al~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g--~--------------~~~~~~~~~gv~~~~aa~~  466 (477)
T TIGR01301       403 ALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG--G--------------GNLPAFVVGAVAAFVSGLL  466 (477)
T ss_pred             HHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC--C--------------CCeeHHHHHHHHHHHHHHH
Confidence            999999995  455999999999999999999988887555433  0              1123566677777788887


Q ss_pred             HHHhhccce
Q 006712          603 FLYSAYRYK  611 (634)
Q Consensus       603 ~~~~~~~~~  611 (634)
                      .++..+|.+
T Consensus       467 ~~~~~~~~~  475 (477)
T TIGR01301       467 ALILLPRPR  475 (477)
T ss_pred             HHHhCCCCC
Confidence            777776654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.81  E-value=1.8e-16  Score=173.67  Aligned_cols=150  Identities=15%  Similarity=0.121  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 006712           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (634)
Q Consensus        90 ~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (634)
                      .....++.+++|-+ ....|+.+.+.++..+..++.|.|||.+ |||..++.+.++.++|.++++.+             
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA-------------  128 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA-------------  128 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence            45567899999865 6678899999999999999999999987 99999999999999999999987             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006712          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (634)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~  249 (634)
                                     ++...++++..+.|+|.|... .....++|+.|.+.      |..+..+...........+|.++
T Consensus       129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia  186 (599)
T PF06609_consen  129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA  186 (599)
T ss_pred             ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence                           788999999999999977655 55666899999988      88777766655555555677777


Q ss_pred             HHHhhccchHHHHHHHHHHHHHHHHHH
Q 006712          250 VYIQMEHGWGSAFGALAIAMGISNMLF  276 (634)
Q Consensus       250 ~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (634)
                      ..+..+.+|||.|++.++...+++++.
T Consensus       187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  187 QLFAAHSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHHHHH
Confidence            766666789999999988766665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.79  E-value=1.1e-16  Score=159.76  Aligned_cols=438  Identities=13%  Similarity=0.022  Sum_probs=249.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      -.|. .....+.....-...-.....+..-+....|.+..+..++......+..++...+|.++|++ |||+...+..+.
T Consensus        75 fq~y-l~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~  152 (528)
T KOG0253|consen   75 FQWY-LFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLV  152 (528)
T ss_pred             chhh-HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHH
Confidence            3444 23333334444444434444455556667788888999999999999999999999999998 999998888776


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..+.-++-..+                            +|+..+.+.|.+.|+|.|+ .|...++-.|..|...     
T Consensus       153 t~v~~~is~~s----------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~-----  198 (528)
T KOG0253|consen  153 TGVFGVISGAS----------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH-----  198 (528)
T ss_pred             HHHHHHhhcCC----------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC-----
Confidence            66555544444                            6888999999999999999 8999999999999888     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHh
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~  305 (634)
                       |....-+. ....+|.++...+.-.+..+.||||..........+.....++..+.-|..-.++++.+.+. .+....+
T Consensus       199 -r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAle-tL~kiAr  275 (528)
T KOG0253|consen  199 -RWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALE-TLHKIAR  275 (528)
T ss_pred             -CCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHH-HHHHHHH
Confidence             77776665 66778888888777777788899988776665444444444444443344444455544333 2333334


Q ss_pred             hhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHH
Q 006712          306 KRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACT  385 (634)
Q Consensus       306 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~  385 (634)
                      ..+.++|.-... .+..++.|+..+.            +|..+....++  ..........  ..-+|+.+....+|+.+
T Consensus       276 mNg~qlplgvl~-~s~~~~~e~e~~~------------~~~~~~~a~ke--~rg~~~nLls--p~lrkttlllw~iwfgn  338 (528)
T KOG0253|consen  276 MNGKQLPLGVLE-SSAIDRQEQEESD------------LDDSKSSAAKE--VRGGTTNLLS--PKLRKTTLLLWRIWFGN  338 (528)
T ss_pred             hcCCCCCcceee-eehhhhhhhhhhc------------hhhhhhccccc--cccchHhhcC--hHHHHHHHHHHHHHHhh
Confidence            333345432221 1111111111000            11111110000  0000000000  12355555555555544


Q ss_pred             HHHHHHHHhhhhHHHHHHhhcccCCCCcccc--------------Ccccc-chhHHHHHHHHHHHHHHHhhhhccccCCC
Q 006712          386 IMLNVILTEFLTLSVQQAYTMNTHMGKLKLP--------------VTCMP-VFPGLSIFLILSLYYSTFVPLCRRITGHP  450 (634)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~l~~~~~~~~~~~l~rr~~~~~  450 (634)
                      ...|.......+- ..|... .-++++...+              ..... .+..+.-+-...+..+++|+++||..   
T Consensus       339 afsyyg~VLltte-lfqsgd-~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT---  413 (528)
T KOG0253|consen  339 AFSYYGSVLLTTE-LFQSGD-ACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT---  413 (528)
T ss_pred             HHHHHHHHHHHHH-HHhccC-ccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH---
Confidence            4333222222221 112110 0000000000              00000 11122222334456788899998854   


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          451 RGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE  530 (634)
Q Consensus       451 ~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~  530 (634)
                              |...+++.++..+........                  . .-..++...    -+.....+...+.|..+.
T Consensus       414 --------Mal~l~~f~iflfll~~c~~r------------------n-~~tvllf~a----rafisg~fqvaYvYtPEV  462 (528)
T KOG0253|consen  414 --------MALSLILFGIFLFLLTTCKTR------------------N-AYTVLLFTA----RAFISGAFQVAYVYTPEV  462 (528)
T ss_pred             --------HHHHHHHHHHHHHHHHHhcCc------------------c-hhHHHHHHH----HHHHhchheEEEEecCcc
Confidence                    666666666555444332210                  0 111222222    222333445678899999


Q ss_pred             cchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          531 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY  610 (634)
Q Consensus       531 ~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~  610 (634)
                      .|...|+.+.|.....+.+|+.+.|.+. +....+                   ....-.+..++++++.+...++-.++
T Consensus       463 yPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s-------------------~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  463 YPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELS-------------------TSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             cchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccc-------------------eeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999999999887 433311                   11123445666777777777777788


Q ss_pred             eeccc
Q 006712          611 KYRSE  615 (634)
Q Consensus       611 ~~~~~  615 (634)
                      |+|..
T Consensus       523 kGR~l  527 (528)
T KOG0253|consen  523 KGRSL  527 (528)
T ss_pred             CCCCC
Confidence            87753

>PRK09848 glucuronide transporter; Provisional

Probab=99.78  E-value=3.1e-16  Score=171.35  Aligned_cols=364  Identities=10%  Similarity=0.013  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHH-HHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIY  146 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~---~GRr~~i-~~~~~~~  146 (634)
                      .+.-.+..+..++.+..+.++++.|+++.+|++..+++.+.....+...+..|+.|+++||.   +||||.+ +++.+..
T Consensus        10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~   89 (448)
T PRK09848         10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL   89 (448)
T ss_pred             HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence            33334456667777777778888999999999999999999999999999999999999995   3777755 5555544


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .+..+++.....  ...+                   ......+++..++.+++.+...+...++..++..+.++     
T Consensus        90 ~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----  143 (448)
T PRK09848         90 MIFSVLVFWVPT--DWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----  143 (448)
T ss_pred             HHHHHHHHhCcC--CCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----
Confidence            444433322100  0000                   02334444555677888888888888888887766432     


Q ss_pred             hhhHHHHHHH-----HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHH
Q 006712          227 LDRFFNFFYL-----SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV  301 (634)
Q Consensus       227 r~~~~~~~~~-----~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  301 (634)
                      |.+..++-.+     ..+++..++|.+.+.........+..+. .+..+++.+..+......+++.+.+..         
T Consensus       144 r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~---------  213 (448)
T PRK09848        144 RARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVA---------  213 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCcc---------
Confidence            7766555443     2445666677665543221111111111 111112222222111111111000000         


Q ss_pred             HHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH
Q 006712          302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI  381 (634)
Q Consensus       302 ~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~  381 (634)
                                                            +....+.-+                   .....|.+....  
T Consensus       214 --------------------------------------~~~~~~~~~-------------------~l~~n~~f~~~~--  234 (448)
T PRK09848        214 --------------------------------------QPSLKISLQ-------------------TLKRNRPLFMLC--  234 (448)
T ss_pred             --------------------------------------CCCHHHHHH-------------------HHhCCchHHHHH--
Confidence                                                  000000000                   000011111111  


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchh-HHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHH
Q 006712          382 PACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFP-GLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVG  460 (634)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~  460 (634)
                       +.....+..+........+..   ...++ .....+.+...+ .+..++..++..++.+|+++|           +.+.
T Consensus       235 -~~~~~~~~~~~~~~~~~~~~~---~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----------~~~~  298 (448)
T PRK09848        235 -IGALCVLISTFAVSASSLFYV---RYVLN-DTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----------NTFL  298 (448)
T ss_pred             -HHHHHHHHHHHHHhhhheeeE---eeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHH
Confidence             111112222111111111110   00111 000011111122 233455566666666655544           4467


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh------
Q 006712          461 IGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA------  534 (634)
Q Consensus       461 ~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~------  534 (634)
                      +|.++.+++.+.+.+..                    . .+.+++.+..++.++|+++..+..++...+..|.+      
T Consensus       299 ~g~~~~~i~~~~~~~~~--------------------~-~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~  357 (448)
T PRK09848        299 IGALLGTCGYLLFFWVS--------------------V-WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGV  357 (448)
T ss_pred             HHHHHHHHHHHHHHHcC--------------------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCc
Confidence            78777777765554321                    0 24455566677889999999999999999988764      


Q ss_pred             -hHHHHHHHHHHHhHHHHHHHHHHHHHhhcccC
Q 006712          535 -MKSIGSAYAALAGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       535 -~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~  566 (634)
                       .+|.++|++++.+.+|..+++.+.+.+....|
T Consensus       358 r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        358 RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             46999999999999999999999998876554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.77  E-value=8.9e-16  Score=168.85  Aligned_cols=363  Identities=13%  Similarity=0.063  Sum_probs=207.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hccch-hHHHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGR-YWTIAIFTTIYLAGL  150 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsD----r~~GR-r~~i~~~~~~~~~~~  150 (634)
                      +..+..++.+..+..+++.|+++.+|++...++.+..+..+.-++..|+.|+++|    |+ || |+.++++.+...++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence            4455667777778889999999999999999999999999999999999999999    65 98 556666777666665


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC-CCCcchhhhhhh
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDR  229 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~-~~~~~~~~~r~~  229 (634)
                      +++...   +..                   ++......+++..++.+++.........++.+|+.+ +++      |.+
T Consensus        92 ~llf~~---p~~-------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~  143 (473)
T PRK10429         92 FLLFSA---HLF-------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQ  143 (473)
T ss_pred             HHHHcC---CCC-------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHH
Confidence            555432   100                   001234445555566778888888888999999985 555      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA  302 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~-------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  302 (634)
                      ..++-....++|+.+.+.+...+..       ..+|+....+.++..++..+..+...++.. .+++..+          
T Consensus       144 l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~-~~~~~~~----------  212 (473)
T PRK10429        144 LVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY-SSDNQVS----------  212 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC-Ccccccc----------
Confidence            8888666677776666554443321       124555555544444433333332222210 0000000          


Q ss_pred             HHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHH
Q 006712          303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIP  382 (634)
Q Consensus       303 a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~  382 (634)
                                                       .++++.+..+.-+..                  .++ |.+...+.. 
T Consensus       213 ---------------------------------~~~~~~~~~~~~~~~------------------~~n-~~~~~ll~~-  239 (473)
T PRK10429        213 ---------------------------------AEGSHLTLKDIVALI------------------YKN-DQLSCLLGM-  239 (473)
T ss_pred             ---------------------------------ccccCCCHHHHHHHH------------------hcC-HHHHHHHHH-
Confidence                                             000000000000000                  011 222222111 


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHH
Q 006712          383 ACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIG  462 (634)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G  462 (634)
                        ....+.......+...+..   ....+. ....+.+..+..+..++..++..++.+|+++|.           .+.++
T Consensus       240 --~~~~~~~~~~~~~~~~y~~---~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-----------~~~~~  302 (473)
T PRK10429        240 --ALAYNIASNIINGFAIYYF---TYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-----------LWAGA  302 (473)
T ss_pred             --HHHHHHHHHHHhhheeeEE---EEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----------HHHHH
Confidence              1111111111111111110   000000 001122333444566677777787777777663           24555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hhh
Q 006712          463 LAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAM  535 (634)
Q Consensus       463 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~  535 (634)
                      .++.+++.+.+......                . + .+.+.+++..++.+++.+...+...++..+..+       .+.
T Consensus       303 ~~~~~~~~~~~~~~~~~----------------~-~-~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~  364 (473)
T PRK10429        303 SIFPVLSCGVLLLMGLA----------------A-P-HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRC  364 (473)
T ss_pred             HHHHHHHHHHHHHHhcc----------------C-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccc
Confidence            55555444443322100                0 1 134455556677889999999999999999877       445


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhcccC
Q 006712          536 KSIGSAYAALAGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       536 rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~  566 (634)
                      .|...|.+.+...++..+++.+.+.+.+..|
T Consensus       365 ~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        365 ESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6779999999999999999999998877654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.77  E-value=9e-16  Score=161.88  Aligned_cols=154  Identities=12%  Similarity=0.031  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 006712           89 SVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (634)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~-~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (634)
                      .+++..|+.+++|++.++ .+.+.++|..++.++.+++|+++||+ |-|+++.++.+.+.+..+++.++           
T Consensus        45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa-----------  112 (511)
T TIGR00806        45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLG-----------  112 (511)
T ss_pred             HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHH-----------
Confidence            345677999999999999 99999999999999999999999998 99999999999999999999987           


Q ss_pred             cccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 006712          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (634)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~  247 (634)
                                       .+...+.+.|++.|++.|... ....++..++|+++      |+++.+++..+..+|.+++++
T Consensus       113 -----------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~  168 (511)
T TIGR00806       113 -----------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSV  168 (511)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             678899999999999999999 99999999999999      999999999999999999999


Q ss_pred             HHHHHhhccchHHHHHH---HHHHHHHHHHHHHHh
Q 006712          248 LVVYIQMEHGWGSAFGA---LAIAMGISNMLFFIG  279 (634)
Q Consensus       248 i~~~l~~~~gw~~~f~~---~~~~~~i~~~~~~~~  279 (634)
                      +++++ ..+||++-+.+   ......+++++.++.
T Consensus       169 L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       169 LGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            99994 56799875544   444455555554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09669 putative symporter YagG; Provisional

Probab=99.77  E-value=9e-16  Score=167.52  Aligned_cols=173  Identities=10%  Similarity=0.056  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchhH-HHHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLT  151 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~---~GRr~-~i~~~~~~~~~~~~  151 (634)
                      +..+..++.+..+..+++.|+++++|++..+++.+..+..+..++..|+.|+++||.   +|||| .++++.+...+..+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            344556666667778899999999999999999999999999999999999999993   38754 55566666666655


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      ++...   |....                   ......+++..++.+++.........++.+|+.++.++     |.+..
T Consensus        96 l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~  148 (444)
T PRK09669         96 LTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQ  148 (444)
T ss_pred             HHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHH
Confidence            44432   11100                   13455666666666777777777788999999854332     88888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHH
Q 006712          232 NFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       232 ~~~~~~~~lg~~~~p~i~~~l~~-------~~gw~~~f~~~~~~~~i~~~~  275 (634)
                      ++.....++|..+++.+...+..       ..+|+..+.+.+++.++..++
T Consensus       149 ~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        149 SWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88877788887777765443322       246776666666554444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.75  E-value=6.9e-16  Score=174.38  Aligned_cols=208  Identities=14%  Similarity=0.103  Sum_probs=155.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      ..+++.+++......+......+........+.++++++.++.+++.+.+.++..++.++.|+++||+ ||||.+.++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence            35566555555545555555556666677788999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhc-cc-------------CCCCCcccccc-----c--ccCCCCCcc--chhHHHHHHHHHHHHHhh
Q 006712          145 IYLAGLTGITLCATMK-VF-------------MPNQDNCDRIS-----Q--LLGSCEPAK--SWQMLYLYTVLYITGFGA  201 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~~-----~--~~~~~~~~~--~~~~~~~~~~~~l~g~g~  201 (634)
                      ++.+|.+++++..... ..             ....+.|...+     +  +...|....  ...+..++++|+++|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            9999999988763211 00             00123453110     0  011233222  124567889999999999


Q ss_pred             hchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------chH
Q 006712          202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG  259 (634)
Q Consensus       202 g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~----------------------gw~  259 (634)
                      +...+...+++.|.+|+++      |+..+++++.+..+|+++|+++++++.+.+                      +||
T Consensus       187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            9999999999999999999      999999999999999999999999887532                      277


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 006712          260 SAFGALAIAMGISNMLFFIG  279 (634)
Q Consensus       260 ~~f~~~~~~~~i~~~~~~~~  279 (634)
                      ..|++.+++.++..+.++..
T Consensus       261 l~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhC
Confidence            78887776665555444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.3e-15  Score=166.48  Aligned_cols=422  Identities=13%  Similarity=0.073  Sum_probs=256.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~---~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      |.+.+..|+.++..+++..   .+-..++++++.+..+++|+.++......+..|+.+.+.||+ |.|.+.+.|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence            5566666666666666553   345667889999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHH-HHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      |.++..++                            .+.+.+++.. ++.|+|.|........+++..|+++       |
T Consensus       124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R  168 (509)
T KOG2504|consen  124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------R  168 (509)
T ss_pred             HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------H
Confidence            99999998                            6777787776 6789999999888888888666544       8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhh
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR  307 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~  307 (634)
                      +.+.++-..+..+|..+-|.+..++.+.+|||+.+++.+.+.+-..+.....++.....++.  ...+..+        .
T Consensus       169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~~--------~  238 (509)
T KOG2504|consen  169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLRN--------S  238 (509)
T ss_pred             HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhcc--------c
Confidence            99999988888999999999999999999999999988777655555555554433222221  0000000        0


Q ss_pred             cccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCc-ccc--chh-hhHHHHHHhHhhHHH
Q 006712          308 HAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCT--VTQ-VEEVKTLVRLVPIPA  383 (634)
Q Consensus       308 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~--~~~-~~~~k~~~~~l~~~~  383 (634)
                      ....+..+..  .+.      ....+...+.+ ...................+-+ ...  +.+ ..++.    .+.+.+
T Consensus       239 ~~~~~~~~~~--~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~----fl~~~~  305 (509)
T KOG2504|consen  239 AASVESTPKP--VEL------RISERDSGLKK-LSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK----FLLLAL  305 (509)
T ss_pred             cccccccccc--ccc------ccccCCCCCCc-ccccchhhhhhCCccccccchhhhhhhhhHHHHcCch----HHHHHH
Confidence            0000000000  000      00000000000 0000000000000000000000 000  000 01111    111111


Q ss_pred             HHHHHHHHHHhhhhHHHHHHh--hcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHH
Q 006712          384 CTIMLNVILTEFLTLSVQQAY--TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGI  461 (634)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~  461 (634)
                      ......+.+......+..++.  +.+      ....+.+..+..+..++..++.+++.|+-..         ..+....+
T Consensus       306 ~~~~~~~g~~~p~~~l~~~~~~~g~~------~~~aa~l~Siigi~~i~gRi~~G~laD~~~~---------~~~~~~~~  370 (509)
T KOG2504|consen  306 SNLFAYLGFNVPFVYLPSYAKSLGLS------SNDAAFLLSIIGVSDIIGRIILGLLADKPGI---------RALVLFLL  370 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC------hhhhHHHHHHHHHhhhhhhhhhhhhcCcccc---------chHHHHHH
Confidence            111111111111112222221  222      2234445556667777778888877775542         23344556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 006712          462 GLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSA  541 (634)
Q Consensus       462 G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g  541 (634)
                      ++++.+++.++....                       .+.+.++...+++|+..+...........+..+.+.-..+.|
T Consensus       371 ~ll~~gl~~~~~p~~-----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~G  427 (509)
T KOG2504|consen  371 TLLIAGLARLFLPFA-----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYG  427 (509)
T ss_pred             HHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHH
Confidence            666666665444433                       255667777788898888888888888999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 006712          542 YAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA  607 (634)
Q Consensus       542 ~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~  607 (634)
                      +..+.+.++..+|+.+.+.+.+.++       +          |+..|...++..+++..+.++..
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg-------~----------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITG-------N----------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccC-------C----------eeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999997777655       1          23445555555555554444433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.75  E-value=1e-15  Score=167.71  Aligned_cols=175  Identities=9%  Similarity=-0.012  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----hhHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTI  145 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~G-----Rr~~i~~~~~~  145 (634)
                      ...+....+.+.+. +.+...++.++.+++|+|.++.+...+...+...+-++ +|+++||+ +     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence            34444567777777 67777888999999999999999998988888888665 99999998 7     77777777655


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      .. ......++..     +                    .......+.+++.+++.+......-++..|..+ ++++   
T Consensus       105 ~~-~~~~~~l~~~-----~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---  154 (468)
T TIGR00788       105 GS-AILYGLLPGK-----V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---  154 (468)
T ss_pred             HH-HHHHHhcccc-----c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---
Confidence            42 1222222200     0                    223334446788999999999999999999998 4421   


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      .++...++.+.+.++|..+|+.++|++.+..+|+..|++.++..++..+...+
T Consensus       155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~  207 (468)
T TIGR00788       155 AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL  207 (468)
T ss_pred             cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence            14445666677788999999999999999899999999887776666443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.75  E-value=3.3e-14  Score=152.48  Aligned_cols=176  Identities=11%  Similarity=-0.025  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH--HHHHHHHHHHHHHHH-HHHhhhccchhHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNA--VNNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~--~~~~~~~~~~~~l~~-G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      ...+....+.+.+.+....+.+|.|++ +.|.|.++.+..  .......-.+..|+. ++.+||+ ||||.+++.+.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            445566677777777777788888886 569999999986  355566665666666 6689997 99999766654322


Q ss_pred             H-HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       148 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      . ....+...  .+.  .                    ....+++....+.++..+...+..-++..|..++++      
T Consensus        81 ~~~~~~~~~~--~~~--~--------------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------  130 (390)
T TIGR02718        81 SACLASLALV--GPD--V--------------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------  130 (390)
T ss_pred             HHHHHHHHcC--Ccc--h--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence            2 12222211  000  0                    112333444455666667777777777778777776      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      ++...+....+..+|..+|+.+.+++.+..||+..|++.++..++..+..+.
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777878889999999988899999999999999888776655554433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.5e-17  Score=170.37  Aligned_cols=225  Identities=19%  Similarity=0.130  Sum_probs=172.3

Q ss_pred             cccccccccccccchhhhhcCCCccCCCCcc-ccCCCCccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006712           22 HQRKKLSVYFIESDNRRMALGRGYTGGTTPV-NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM  100 (634)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~  100 (634)
                      .+++|++++.|+.|+.++|+.+.++++++.. ....+-. .+...+++ -+|++.+..++.++..|++..|.|.|+.+..
T Consensus       206 ~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~-~~YVL~Nk-~iW~la~a~vfvYivR~gi~dW~p~YL~e~k  283 (448)
T COG2271         206 LRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIF-VKYVLKNK-LIWLLALANVFVYVVRYGINDWGPLYLSEVK  283 (448)
T ss_pred             hCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHH-HHHHHcCh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence            3678999999999998866344332111111 0000001 12223333 3899999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhH-HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 006712          101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYW-TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (634)
Q Consensus       101 ~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~-GRr~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (634)
                      |+|..++++..+.|..+...+++++||+|||++ |||. +-++++++.+++.+....+       |.             
T Consensus       284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-------~~-------------  343 (448)
T COG2271         284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-------PN-------------  343 (448)
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-------CC-------------
Confidence            999999999999999999999999999999998 7664 5556666666666555554       21             


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhccc
Q 006712          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHG  257 (634)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l-g~~~~p~i~~~l~~~~g  257 (634)
                            .+..+..++.+++|+..-+++-.+.....|..|++.      -|++.++..++..+ |+.++....+++.+.+|
T Consensus       344 ------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g  411 (448)
T COG2271         344 ------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVGLFAYLIGAALAGLPLGYIADTWG  411 (448)
T ss_pred             ------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence                  456778888899999999999999999999999998      67777776666556 88889888999999899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhc
Q 006712          258 WGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       258 w~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      |...|++..+..+++.+++....
T Consensus       412 W~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         412 WDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHH
Confidence            99999988777766666555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.3e-16  Score=161.44  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=137.5

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCC
Q 006712           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (634)
Q Consensus        99 ~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (634)
                      .++-++++.|++...+.+...+..|+.|.+.||+ |+|-.+++|.++....++++++.                      
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg----------------------  156 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG----------------------  156 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence            3566778999999999999999999999999998 99999999999999999999997                      


Q ss_pred             CCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006712          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (634)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw  258 (634)
                            .++++++++|.++|+|.+....+..++++|.||++..     |++.+|+.--...+|-.+||.++|.+-+..|.
T Consensus       157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk  225 (464)
T KOG3764|consen  157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK  225 (464)
T ss_pred             ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence                  6788999999999999999999999999999998874     89999998889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc
Q 006712          259 GSAFGALAIAMGISNMLFFIGTPLY  283 (634)
Q Consensus       259 ~~~f~~~~~~~~i~~~~~~~~~~~~  283 (634)
                      ..+|.+.++.+++-..+-++..+.+
T Consensus       226 ~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  226 SAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             cCcHHHHHHHHHHHHHHHHheeCcc
Confidence            9999999988887777766655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.73  E-value=6.8e-15  Score=154.50  Aligned_cols=394  Identities=10%  Similarity=0.014  Sum_probs=214.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      .+..+......+...+++-...++.+.+++++.|+|.++.|.+.+...+...+.+|+.|.++||+ |.||-++....+..
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILL   84 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHH
Confidence            34567777777777777777788999999999999999999999999999999999999999998 97666554443332


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHH----HHHhhhchhhhHHHHhhccCCCCCcch
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYI----TGFGAAGIRPCVSSFGADQFDERSKDY  223 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (634)
                      +...........|.+.                     .|   ++++.++    .++......|..-++..+..-.     
T Consensus        85 ~l~~pff~~v~~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~-----  135 (412)
T PF01306_consen   85 LLFGPFFIYVFGPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR-----  135 (412)
T ss_dssp             HTCHHHHHHTHHHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH-----
Confidence            2222222111111111                     11   1222222    2333333344444444322111     


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHH
Q 006712          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAA  303 (634)
Q Consensus       224 ~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a  303 (634)
                         .+-=+|--.+...+|.+++..++|++.+ .+-+..||+.....++..++.+..++...++.+..+            
T Consensus       136 ---~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~------------  199 (412)
T PF01306_consen  136 ---NGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD------------  199 (412)
T ss_dssp             ---HSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST------------
T ss_pred             ---hcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc------------
Confidence               1122233445677999999999999876 455678887665544444443333222111100000            


Q ss_pred             HhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHH
Q 006712          304 FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPA  383 (634)
Q Consensus       304 ~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~  383 (634)
                                        ...           ..+++.+..+..                    +.-..|++...+.+..
T Consensus       200 ------------------~~~-----------~~~~~~~~~~~~--------------------~l~k~~~fw~~~l~v~  230 (412)
T PF01306_consen  200 ------------------ALG-----------AKKDKVSLKDVL--------------------SLFKMRNFWFFVLFVI  230 (412)
T ss_dssp             ------------------TSS-----------S------HHHHH--------------------HHTTSHHHHHHHHHHH
T ss_pred             ------------------ccc-----------cCCCCCcHHHHH--------------------HHhcchhHHHHHHHHH
Confidence                              000           000000000000                    0011223333333333


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHH
Q 006712          384 CTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGL  463 (634)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~  463 (634)
                      .....|..+.|....+.... ..+...+  +...+.+..+..+.-.+...+..++++|++.|           ..+.++.
T Consensus       231 g~~~~Y~vfdqqf~~y~~~~-f~~~~~g--~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----------~~Lllag  296 (412)
T PF01306_consen  231 GVAAIYDVFDQQFPIYFASF-FQSAGQG--NQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----------NLLLLAG  296 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-SSSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcccccC--hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----------hHHHHHH
Confidence            33334444444333222210 0000000  00112222223333334444444554444444           4455555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 006712          464 AVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA  543 (634)
Q Consensus       464 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  543 (634)
                      +++.+=....++..                       +.+++++.=.+.++-..+......-|+.+.+|+++.++...+.
T Consensus       297 ~i~~iRi~~~~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~  353 (412)
T PF01306_consen  297 VIMAIRIIGSGFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVG  353 (412)
T ss_dssp             HHHHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHH
T ss_pred             HHHHHHHHHHhhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence            55555444444332                       5677788888899999999999999999999999999888884


Q ss_pred             -HHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccce
Q 006712          544 -ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  611 (634)
Q Consensus       544 -~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~  611 (634)
                       ++..+++..+.+.+.|.+.+..|                  ++..|++++.+.++..++..+..++.+
T Consensus       354 ~~~~~~~~~~i~s~~~G~lyd~~G------------------~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  354 FQFAKQIGIIILSPLAGYLYDRIG------------------FQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHHHHHHHHhhhHHhhHhhcC------------------cHHHHHHHHHHHHHHHHHheeeecCCC
Confidence             68889999999999998877443                  456899999888877777777665544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.73  E-value=1.1e-15  Score=166.08  Aligned_cols=357  Identities=13%  Similarity=0.065  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hccchhHH-HHHHHHHHHHHHHHH
Q 006712           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWT-IAIFTTIYLAGLTGI  153 (634)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsD----r~~GRr~~-i~~~~~~~~~~~~~~  153 (634)
                      +...+.......+++.|+++.+|+++..++.+.....+..++..|+.|.++|    |+ ||||. ++++.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            5555666666678899999999999999999999999999999999999999    66 97665 446777777776666


Q ss_pred             HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH
Q 006712          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (634)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  233 (634)
                      ....      |              .+.+.......+.+..++..++.........++.+|+.+++++     |.+..++
T Consensus        90 f~~~------p--------------~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~  144 (428)
T PF13347_consen   90 FSPP------P--------------AGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSW  144 (428)
T ss_pred             hccc------c--------------chhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHH
Confidence            6430      0              0001112334456666677899899999999999999986542     8898888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh----c---cchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          234 FYLSVTVGAIVAFTLVVYIQM----E---HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i~~~l~~----~---~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      -.....+|..+...+.+.+.+    .   .+|++.+++.+++.++..++.....|+...+.++.++              
T Consensus       145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~--------------  210 (428)
T PF13347_consen  145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK--------------  210 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc--------------
Confidence            777777777655555544432    1   1588887777766666555555444431100000000              


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTI  386 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~  386 (634)
                                                       ..++.              ..++...    ++ |.+...+...+...
T Consensus       211 ---------------------------------~~~~~--------------~~~~~~~----~n-r~~~~l~~~~~~~~  238 (428)
T PF13347_consen  211 ---------------------------------KISLR--------------DSLRSLF----RN-RPFRILLLAFFLQW  238 (428)
T ss_pred             ---------------------------------ccccc--------------cchhhhc----cc-chHHHHHHHHHHHH
Confidence                                             00000              0000000    01 11111221212221


Q ss_pred             HHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHH
Q 006712          387 MLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVS  466 (634)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~  466 (634)
                      ..+........++..+..+.+.       ..+.+.....+..++..|+..++.+|+++|..           +..+.++.
T Consensus       239 ~~~~~~~~~~~y~~~~vl~~~~-------~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-----------~~~~~~~~  300 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTYVLGNEG-------LISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-----------YIIGLLLA  300 (428)
T ss_pred             hhhhhhhhHHHHHHHHHhcCch-------hhHHHHHHHHHHHHHHHHHHHHHHHHccceee-----------hhhhHHHH
Confidence            2222211121222222222211       12333445566677788888888888877743           67777877


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-------hhHHHH
Q 006712          467 ILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-------AMKSIG  539 (634)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~  539 (634)
                      +++.++..+...                     .+.+++.+..++.|++.+......++...|..+.       +..|..
T Consensus       301 ~~~~~~~~~~~~---------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~  359 (428)
T PF13347_consen  301 ALGFLLLFFLGP---------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMY  359 (428)
T ss_pred             HHHHHHHHHHHh---------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHH
Confidence            777777665541                     1567777888899999999999999999988873       457999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHhhcccC
Q 006712          540 SAYAALAGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       540 ~g~~~~~~~ig~~lg~~l~~~v~~~~~  566 (634)
                      .|++++...++..++..+.+.+....|
T Consensus       360 ~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  360 FSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999998877554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.73  E-value=6.1e-14  Score=141.22  Aligned_cols=349  Identities=15%  Similarity=0.109  Sum_probs=235.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      |--+..++++.+--|-...++- .+...+.+++|.|.++++.+.++-.+...+..++..+++.|+ |..|.+..++++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence            4445555555566666665544 456678999999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      +|.++=..                             .+...++.+-.+.|.|.+......++.+-+-||++.       
T Consensus        89 ~G~~iR~~-----------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------  132 (395)
T COG2807          89 AGILIRSL-----------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------  132 (395)
T ss_pred             HHHHHHhc-----------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence            88766554                             345778888899999999999999999999999874       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhh
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRK  306 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~-gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~  306 (634)
                      +..+++|..+.++|+++++.+...+.++. ||+....+-+...++++++++--..+++....+.+.              
T Consensus       133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~--------------  198 (395)
T COG2807         133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKL--------------  198 (395)
T ss_pred             hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccc--------------
Confidence            88999999999999999999999988877 799988777777766666654321111000000000              


Q ss_pred             hcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHH
Q 006712          307 RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTI  386 (634)
Q Consensus       307 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~  386 (634)
                          .+                                            +..-|+        +.......+.+=+...
T Consensus       199 ----~~--------------------------------------------~~~vw~--------~~~aW~vtLfmGlqS~  222 (395)
T COG2807         199 ----VS--------------------------------------------VRKVWR--------SPLAWQVTLFMGLQSL  222 (395)
T ss_pred             ----cc--------------------------------------------cccccc--------CchhHHHHHHHHhhHH
Confidence                00                                            001111        1111112222234566


Q ss_pred             HHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHH
Q 006712          387 MLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVS  466 (634)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~  466 (634)
                      .+|..+.+++..+.++.  ++..      ..+.+..+..+..+......-.+.+|   +       .+.+........++
T Consensus       223 ~~Y~~~~WLP~ili~~G--~sa~------~aG~llsl~~l~~~~~~ll~P~la~R---~-------~n~r~~~~~~~~~~  284 (395)
T COG2807         223 LYYIVIGWLPAILIDRG--LSAA------EAGSLLSLMQLAQLPTALLIPLLARR---S-------KNQRPLVVLALLLM  284 (395)
T ss_pred             HHHHHHHHHHHHHHHcC--CCHH------HhhhHHHHHHHHHHHHHHHHHHHHHH---h-------cccchHHHHHHHHH
Confidence            77888888887776543  3322      23333333333333333333333332   1       12334445555556


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHH
Q 006712          467 ILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAAL  545 (634)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~  545 (634)
                      .++.+.+.+....                    ..++|    .+++|+|.+..+|..+.++....+ ++..+.-+|..+.
T Consensus       285 l~G~~G~~~~P~~--------------------~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg  340 (395)
T COG2807         285 LVGLVGLLLAPGQ--------------------LPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQG  340 (395)
T ss_pred             HHHHHHHHHhhhh--------------------HHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence            5665555444311                    13334    367899999999999988887654 4456667778888


Q ss_pred             HhHHHHHHHHHHHHHhhcccC
Q 006712          546 AGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       546 ~~~ig~~lg~~l~~~v~~~~~  566 (634)
                      ...+-..+||.+.|.+.+.++
T Consensus       341 ~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         341 VGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             hhHHHHhhhhhhHhHHHHhcC
Confidence            888888899999999998776

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.73  E-value=4.7e-14  Score=144.14  Aligned_cols=151  Identities=15%  Similarity=0.080  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      +..+...-+...+.. .....+.+++++.++++..+++++...+..++.++.+..|++.+|+ |+|+.++.++.++++|.
T Consensus        15 ~v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~   92 (422)
T COG0738          15 FVLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             HHHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence            333433333433433 4566788899999999999999999999999999999999999998 99999999999999998


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .+..-++.                         ..++..++++.++.|.|.+..+....++++.+.+++.      -..-
T Consensus        93 ~lF~pAa~-------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~r  141 (422)
T COG0738          93 ALFWPAAS-------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFR  141 (422)
T ss_pred             HHHhhhhh-------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHH
Confidence            88864422                         1677899999999999999999999999999999976      5666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                      +++.+....+|+.++|.+++++..
T Consensus       142 lnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         142 LNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHH
Confidence            788888889999999999988766

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.72  E-value=3.3e-15  Score=150.50  Aligned_cols=117  Identities=15%  Similarity=0.088  Sum_probs=105.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCC
Q 006712          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (634)
Q Consensus       102 ~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (634)
                      .+..-+|.+-+.|.+...+.++++|.+|||+ |||+++++|++..++...+.+++                         
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-------------------------  118 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-------------------------  118 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            3445689999999999999999999999998 99999999999998888888876                         


Q ss_pred             ccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                         .|+..++++|++.|+..|-. ..+.++++|.+++++      |+.+++....+..+|..+||+++|++..
T Consensus       119 ---~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  119 ---RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ---HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence               67777778899999998874 678899999999998      9999999999999999999999999987

>PRK11462 putative transporter; Provisional

Probab=99.72  E-value=5.3e-14  Score=153.97  Aligned_cols=173  Identities=10%  Similarity=0.056  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHH-HHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYLAGLT  151 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~---~GRr~~i~-~~~~~~~~~~~  151 (634)
                      +..+..++.+..+..++..|.++.+|+++..++.+..+.-+.-++.-|+.|.++||.   +||||..+ ++.+.+.++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            445556666767778899999999999999999999999999999999999999973   49876554 56666776666


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      ++...   |...                   .......+++.-++..++.........++.+|+.+..++     |.+..
T Consensus        96 llf~~---p~~s-------------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~  148 (460)
T PRK11462         96 LAYST---PDLS-------------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQ  148 (460)
T ss_pred             HHHhC---CCCC-------------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHH
Confidence            55543   1110                   012344455555667888888888888999999885443     99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-------cchHHHHHHHHHHHHHHHHH
Q 006712          232 NFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       232 ~~~~~~~~lg~~~~p~i~~~l~~~-------~gw~~~f~~~~~~~~i~~~~  275 (634)
                      ++...+.++|..+++.+...+...       .+|+....+.+++.++...+
T Consensus       149 s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        149 SWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            998888888888887765544332       24665555544444344333

>PTZ00207 hypothetical protein; Provisional

Probab=99.72  E-value=1.2e-13  Score=152.39  Aligned_cols=176  Identities=9%  Similarity=-0.012  Sum_probs=129.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      .++|..+........+... .|++..+ ...+++++|+|.++.+++.++... ..++.++.|+++||+ |||++++++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~-~y~fsv~-s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSF-MYAFNLI-SGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4556645544444444333 3344443 456889999999999998877443 445677789999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      ++.++.++++++...  ...                    .+.+.+++.|++.|+|.+...+.....+.++|| ++    
T Consensus       100 l~~iG~ll~ala~~~--~i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~----  152 (591)
T PTZ00207        100 VFCLGTLLFALTFQE--VIE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN----  152 (591)
T ss_pred             HHHHHHHHHHHHhcc--ccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence            999999999886210  000                    367889999999999999988888899999997 56    


Q ss_pred             hhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~-~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (634)
                        |+...++...+..+|+++ +++..+++.+  +|+..|++.++..++..++
T Consensus       153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        153 --RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHH
Confidence              999999999999999975 5555555543  5777676666554444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.70  E-value=4.7e-14  Score=152.96  Aligned_cols=149  Identities=12%  Similarity=0.065  Sum_probs=125.6

Q ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccC
Q 006712           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (634)
Q Consensus        98 ~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (634)
                      ++.|....+.+.+.++|.++++++.+++|.|.||+ .-.+.+....+++.+..++....                     
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~---------------------  131 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV---------------------  131 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            56788888999999999999999999999999998 86666666666665554444433                     


Q ss_pred             CCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh----
Q 006712          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----  253 (634)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~----  253 (634)
                             .+.+.+++.|++.|+..++.+|+...+++.+|.+++      |+.-+++++.+..+|..+|.+++..+.    
T Consensus       132 -------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  132 -------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             -------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence                   688999999999999999999999999999999999      999999999999999999999887753    


Q ss_pred             --hccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          254 --MEHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       254 --~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                        ...||+|.|++.+++.++..++.++..|
T Consensus       199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             CCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence              3568999999999877666655555444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.70  E-value=1.9e-13  Score=145.85  Aligned_cols=382  Identities=14%  Similarity=0.101  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 006712           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~  153 (634)
                      +....++..+.+-...++++.|+.+ .|+|.+|.|.+.+...+...+.++++|+++||...+||.+.+..++..+.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666667888999976 679999999999999999999999999999998446777777666555544333


Q ss_pred             HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH
Q 006712          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (634)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  233 (634)
                      ...                            .+.+.+++..++..+......|...++.-+...++..+  =+|-|..  
T Consensus        86 ~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~--YG~iRlw--  133 (400)
T PF03825_consen   86 AFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKD--YGRIRLW--  133 (400)
T ss_pred             HHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCC--CCcchhh--
Confidence            332                            34566666666777777777888888777766533211  1233333  


Q ss_pred             HHHHHHHHHHHHHHH-HHHHhhcc---chHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcc
Q 006712          234 FYLSVTVGAIVAFTL-VVYIQMEH---GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i-~~~l~~~~---gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~  309 (634)
                          .++|-.++... ++++....   +..+.+++.++..++... +.+..+..+.++..+...                
T Consensus       134 ----GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~~~----------------  192 (400)
T PF03825_consen  134 ----GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAG-FALFLPKTPPKRSAKESV----------------  192 (400)
T ss_pred             ----hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHH-HHHhCCCCccccccCCCc----------------
Confidence                33444444322 22222222   223345554443322222 112222211000000000                


Q ss_pred             cccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHH
Q 006712          310 AFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN  389 (634)
Q Consensus       310 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~  389 (634)
                                                  + +....+.              ++.+     ++++.+.-.+..++.+....
T Consensus       193 ----------------------------~-~~~~~~~--------------~~ll-----k~~~~~~Fll~~~l~~~~~~  224 (400)
T PF03825_consen  193 ----------------------------K-KLLGLDA--------------LKLL-----KNPRFLVFLLAAFLIGISHA  224 (400)
T ss_pred             ----------------------------c-cccchHH--------------HHHh-----cCccHHHHHHHHHHHHHHHH
Confidence                                        0 0000000              0000     01111111111111122121


Q ss_pred             HHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHH
Q 006712          390 VILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS  469 (634)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~  469 (634)
                      . +..+.+.+..+..+....      ..+....+..+.=+.    .-...+|+.+|       ++.++.+.++.+..++=
T Consensus       225 ~-~~~f~~~yl~~~gg~~~~------~~g~~~~l~~~aEi~----~f~~~~~~~~r-------~g~~~ll~~a~~~~~vR  286 (400)
T PF03825_consen  225 A-YYTFFSIYLQELGGYSGS------TIGILWALGVVAEIP----FFFFSGRFLKR-------FGIKWLLLLALVAYAVR  286 (400)
T ss_pred             H-HHHHHHHHHHHcccchhh------HHHHHHHHHHHHHHH----HHHHHHHHHHh-------cCHHHHHHHHHHHHHHH
Confidence            1 222222232221111100      111111122222122    22334555666       55666677777766665


Q ss_pred             HHHHHHHHHHHHhhhhhcCccccccCCCCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 006712          470 VIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW----LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL  545 (634)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~  545 (634)
                      ..+++...                      .+.++    +...-++.|+..++.......|+.+.+|++.|++++++++.
T Consensus       287 ~~l~a~~~----------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~  344 (400)
T PF03825_consen  287 WLLYAYFS----------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSA  344 (400)
T ss_pred             HHHHHHhc----------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence            55555442                      02222    22223578999999999999999999999999999999885


Q ss_pred             -HhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          546 -AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  609 (634)
Q Consensus       546 -~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~  609 (634)
                       ..++|..+|..+.|.+.+..+  .++.-          .+..++.+.+++.++..++++++.|+
T Consensus       345 ~~~Glg~~iG~~igG~l~~~~g--~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  345 LSFGLGGAIGSLIGGWLYDAFG--ARGMF----------DWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhc--chhhh----------hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence             468999999999998887433  11110          12335566666666666666666543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.70  E-value=3.8e-16  Score=160.78  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=106.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCC
Q 006712          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (634)
Q Consensus       102 ~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (634)
                      ++....+.+..+..++.++++++.||++||+ |||+++...+++.+++++.++++.                     |.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------------~~~  138 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------------GTT  138 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------------CCC
Confidence            5567788899999999999999999999997 999999999999999998766641                     122


Q ss_pred             ccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHhh---
Q 006712          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL----SVTVGAIVAFTLVVYIQM---  254 (634)
Q Consensus       182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~----~~~lg~~~~p~i~~~l~~---  254 (634)
                      +...-+.++...|+++|+|.|+-+|+..+..+|..-.+.      ||...+....    +.-.|+.++-++.+-...   
T Consensus       139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~  212 (538)
T KOG0252|consen  139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN  212 (538)
T ss_pred             CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence            222456788899999999999999999999999999888      8888777433    344444444444333211   


Q ss_pred             --------ccchHHHHHHHHHHHH
Q 006712          255 --------EHGWGSAFGALAIAMG  270 (634)
Q Consensus       255 --------~~gw~~~f~~~~~~~~  270 (634)
                              ..-||..|.+.++..+
T Consensus       213 ~~~~~~~ld~vWRl~~glg~vpa~  236 (538)
T KOG0252|consen  213 GPSTYPHLDGVWRIIFGLGAVPAL  236 (538)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHH
Confidence                    1238888777665443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=3.8e-14  Score=156.70  Aligned_cols=182  Identities=13%  Similarity=0.034  Sum_probs=136.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +++|+.........++..+.+|++..++|.|+++.+|++..+..+......++..++.+++|+++||+ |||+++.++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~  324 (490)
T PRK10642        246 TKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSV  324 (490)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence            34566555555555667788999999999999999999998888888888899999999999999998 99999888876


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+++.....     .                    .+...+++++++.|++.+...+....+..|.+|++.    
T Consensus       325 ~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~----  375 (490)
T PRK10642        325 ALFVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI----  375 (490)
T ss_pred             HHHHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc----
Confidence            55444333222100     0                    245667788888888887777888889999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (634)
                        |++++++.+....+++.++|.+.+++.+..+ |+..+++..+..++.++..++
T Consensus       376 --Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~  428 (490)
T PRK10642        376 --RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT  428 (490)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence              9999998555556667889999999887654 676666555554444444443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.59  E-value=4.1e-11  Score=130.53  Aligned_cols=87  Identities=17%  Similarity=0.220  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCc
Q 006712          502 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  581 (634)
Q Consensus       502 ~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~  581 (634)
                      .+.+.+.-++.|+..+-..+..-++..+..|++..+...|++.+.....+++||++.+.+.+.+++              
T Consensus       380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~--------------  445 (477)
T PF11700_consen  380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS--------------  445 (477)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------
Confidence            344445556789999999999999999999999999999999999999999999999999887651              


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHH
Q 006712          582 TGRFDYLYWLLAVLSVINFCAFLY  605 (634)
Q Consensus       582 ~~~~~~~f~~~a~~~~v~~~~~~~  605 (634)
                         ..+-++.+.++.++++++.+.
T Consensus       446 ---~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  446 ---QRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             ---chhHHHHHHHHHHHHHHHHhh
Confidence               234466667766766666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.57  E-value=6.5e-12  Score=133.44  Aligned_cols=365  Identities=12%  Similarity=0.101  Sum_probs=224.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchhH-HHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYL  147 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~---~GRr~-~i~~~~~~~~  147 (634)
                      +--....+..++.+..+..++..|.++.+|+++..+|.+..+.-+.-++.-|+.|.++||.   +||+| -++++.+.+.
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~   94 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA   94 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence            3344556677778878888999999999999999999999999999999999999999984   48655 5556667777


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      +..+++..+..   .                   ..+.+....++.-.+.+++.....-...++.+|+.++.++     |
T Consensus        95 i~~~l~F~~p~---~-------------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R  147 (467)
T COG2211          95 IVAVLLFITPD---F-------------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----R  147 (467)
T ss_pred             HHHHHHHcCCC---c-------------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----H
Confidence            77777776521   0                   0013445556666788999999988899999999876553     9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL  300 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~-------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  300 (634)
                      .+..++.....++|..+...+...+..       ..||+....+.+++..+.++..+...++...+..            
T Consensus       148 ~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~------------  215 (467)
T COG2211         148 ASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQ------------  215 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccc------------
Confidence            999999888888887666655544432       2356655555555544444444433222111000            


Q ss_pred             HHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh
Q 006712          301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP  380 (634)
Q Consensus       301 ~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~  380 (634)
                                 |.+++                      ...++.+.-...                   ...|.++..+ 
T Consensus       216 -----------~~~~~----------------------~~~~~~~~~~~~-------------------~~Nrp~~~~l-  242 (467)
T COG2211         216 -----------PTKTG----------------------VKLKLKDSFLLI-------------------FKNRPLLLLL-  242 (467)
T ss_pred             -----------cCccc----------------------ccccHHHHHHHH-------------------HccchHHHHH-
Confidence                       00000                      000000000000                   0011111111 


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHH-hhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHH
Q 006712          381 IPACTIMLNVILTEFLTLSVQQA-YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV  459 (634)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i  459 (634)
                        +...+++.......+..+++. ..++..    ...+...........++..++..++..++++|           +..
T Consensus       243 --~~~l~~~~~~~i~~s~~~yy~~y~lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~  305 (467)
T COG2211         243 --LMNLLLFIAFNIRGSIMVYYVTYVLGDP----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLF  305 (467)
T ss_pred             --HHHHHHHHHHHHHhhhhheeEEEEcCCh----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHH
Confidence              112222222222223222221 111111    11122222223333344456666666666666           346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Q 006712          460 GIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------  532 (634)
Q Consensus       460 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P-------  532 (634)
                      .+|.++.+++.+.+.+...                     -+...+++..++.++|.+...+..++.+.+...       
T Consensus       306 ~~~~~~~~i~~~~~~f~~~---------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG  364 (467)
T COG2211         306 LIGLLLLAVGYLLLYFTPA---------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTG  364 (467)
T ss_pred             HHHHHHHHHHHHHHHhhcC---------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhC
Confidence            7777777777766665531                     245666666688899999999999999888654       


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccC
Q 006712          533 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG  566 (634)
Q Consensus       533 ~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~  566 (634)
                      .+..|..-|.+.+++-+|..++..+.+++....|
T Consensus       365 ~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         365 VRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3556888999999999999999999998877544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.52  E-value=1.1e-10  Score=120.74  Aligned_cols=374  Identities=14%  Similarity=0.060  Sum_probs=214.0

Q ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----hh-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 006712           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RY-WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (634)
Q Consensus        96 l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~G-----Rr-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (634)
                      +..|++++....+..+....+... ..+..|+.||+. +     || +-+..+.+++..+..+.+.+...-.- ..    
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~-~~----   78 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAE-SG----   78 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcc-cc----
Confidence            346788888888888777666554 688999999997 6     55 45566777777776666655332110 00    


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006712          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (634)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~  249 (634)
                             .....+.........++..+.|+|.+....+..++++|..|+++      |++..++.+.+.-+|..++.++.
T Consensus        79 -------~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~  145 (403)
T PF03209_consen   79 -------QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF  145 (403)
T ss_pred             -------cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence                   00011111222344455578899999999999999999999999      99999999999999999999999


Q ss_pred             HHHhhccch-HHHHHHH---HHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCC
Q 006712          250 VYIQMEHGW-GSAFGAL---AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK  325 (634)
Q Consensus       250 ~~l~~~~gw-~~~f~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~  325 (634)
                      +.+.+.++- |..-.+.   .+...+.++..+-..++.+...+.                                    
T Consensus       146 g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~------------------------------------  189 (403)
T PF03209_consen  146 GRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAA------------------------------------  189 (403)
T ss_pred             HHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccC------------------------------------
Confidence            988777663 2221222   122222222221111111110000                                    


Q ss_pred             ccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhh
Q 006712          326 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT  405 (634)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (634)
                                .+.++..+.+.....              ..  ..+.+++...+  ++....+++           |..-
T Consensus       190 ----------~~~~~~~f~~a~~~~--------------~~--~~~a~~f~~fl--~l~t~a~~~-----------QD~i  230 (403)
T PF03209_consen  190 ----------AERPRPPFREAWRQV--------------WA--SPQARRFFVFL--FLGTLAFFM-----------QDVI  230 (403)
T ss_pred             ----------CCCCCccHHHHHHHH--------------Hh--CCChhHHHHHH--HHHHHHHHh-----------hHHH
Confidence                      000011111111111              00  01223322221  111111111           1111


Q ss_pred             cccCCCC--cccc---CccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006712          406 MNTHMGK--LKLP---VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYR  480 (634)
Q Consensus       406 ~~~~~~~--~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~  480 (634)
                      + ..+++  +..+   +..++.+.....++...+.+++..   ||       ....+....|.....+++......... 
T Consensus       231 L-EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~~-  298 (403)
T PF03209_consen  231 L-EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGPL-  298 (403)
T ss_pred             c-CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            1 11111  1222   233455555556666666666543   22       222334556777777776554443311 


Q ss_pred             HhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006712          481 RNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  560 (634)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~  560 (634)
                                         -+.+.+....+++|+|.++......+...+..+++..|..+|.|...+.++..++..+.+.
T Consensus       299 -------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~  359 (403)
T PF03209_consen  299 -------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA  359 (403)
T ss_pred             -------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               1456777888999999999999999999999999999999999999999999999999998


Q ss_pred             hhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHH
Q 006712          561 IKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF  603 (634)
Q Consensus       561 v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~  603 (634)
                      +.+...        ++..+-....|..+|.+=+++.++++.+.
T Consensus       360 ~~D~~~--------~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  360 LRDLVR--------ALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHH--------HhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            876432        21111012234445655555555554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.50  E-value=2.9e-12  Score=137.52  Aligned_cols=172  Identities=11%  Similarity=0.090  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+......+.....++....+++.|+++++|++..+++++.+...+...++.+++|+++||+ |||+.+..+.+...+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~  296 (393)
T PRK15011        218 TLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFY  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            33333344444445555667889999999999999999988887788888999999999998 99998887766554443


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      ..+...                            .+.+.+++.+++.+++.|...+....+..|.+|+ +      |+++
T Consensus       297 ~~~~~~----------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~  341 (393)
T PRK15011        297 AGMLMA----------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA  341 (393)
T ss_pred             HHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence            333222                            3455666778888887777777777888898874 5      7889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      .++++...++|..++|.++|++.+..||+..|++..++.+++++..+.
T Consensus       342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999888899999999999999999889999998877777666655543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.49  E-value=1.4e-12  Score=143.27  Aligned_cols=175  Identities=16%  Similarity=0.076  Sum_probs=135.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .+|...+..++....++++..++|.|+++++|+|..++++....+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence            477788888888888888889999999999999999999999999999999999999999998 9998776655444433


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ..++.+...                          .+....++.+++.|++..+..........|.+|++.      |++
T Consensus       338 ~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~  385 (467)
T PRK09556        338 FTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGV  385 (467)
T ss_pred             HHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHH
Confidence            322222100                          234455567777776554544444567779999998      999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHH
Q 006712          230 FFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       230 ~~~~~~~~~~l-g~~~~p~i~~~l~~------------~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      +.++.+...++ |+.++|.+.|++.+            ..+|+..|++..++.+++.+..+
T Consensus       386 a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        386 ANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            99999988886 77999999999998            57899999888777666655544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.48  E-value=3.6e-13  Score=130.19  Aligned_cols=367  Identities=13%  Similarity=0.108  Sum_probs=217.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      .+..+.++..|..+++| ---..+..+...+.+++.++..++.+.|..-..+.+.++||+.||.+|-|..-++-+.+..+
T Consensus        44 m~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~  122 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL  122 (459)
T ss_pred             HHHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence            34444445555555544 23344667777778888888999999999999999999999999998987766666666677


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      |.++.+.-..                         ....+++.++|++.|+|.-........+..-+|..++      .+
T Consensus       123 GqliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln  171 (459)
T KOG4686|consen  123 GQLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LN  171 (459)
T ss_pred             HHHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------cc
Confidence            7777765321                         0578999999999999998888888999999999999      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhc
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH  308 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~  308 (634)
                      ..+++.-....+|..+-..+.+++.+..+--   +-...-..+++.+.+-.+.         ....-++. +..+..+.+
T Consensus       172 ~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~---~~~~ghT~LG~~l~~~~~t---------c~~slica-l~lg~~D~r  238 (459)
T KOG4686|consen  172 FVFGLQLSVARLGSTVNFLLMPFLYDTMGRM---FPGVGHTLLGLWLCFEVKT---------CKQSLICA-LSLGLSDDR  238 (459)
T ss_pred             chhhHHHHHHHhhceeeeeecHHHHHHHHHh---cccchHHHHHHHHHHHHHH---------HHHHHHHH-HHhhhhhhH
Confidence            9999988888888877777777776544311   1011111111111111000         00000000 000000000


Q ss_pred             ccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHH-hHhhHHHHHHH
Q 006712          309 AAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV-RLVPIPACTIM  387 (634)
Q Consensus       309 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~l~~~~~~~~  387 (634)
                      .+     +. +...+                         ...+     ..|       +.++++... ....+.+..+.
T Consensus       239 Ae-----ri-lh~e~-------------------------g~~G-----e~p-------kLtdv~~f~ppfw~~~iicv~  275 (459)
T KOG4686|consen  239 AE-----RI-LHLEE-------------------------GFLG-----EEP-------KLTDVNTFYPPFWVLVIICVL  275 (459)
T ss_pred             HH-----HH-Hhhhc-------------------------Cccc-----CCc-------ccccccccCccHHHHHHHHHH
Confidence            00     00 00000                         0000     000       001111110 11112222334


Q ss_pred             HHHHHHhhhh---HHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHH
Q 006712          388 LNVILTEFLT---LSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA  464 (634)
Q Consensus       388 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~  464 (634)
                      +++..+...+   .+.+.-.+.+      ...++.+.+...+...+..|+.+.++|+.+++..          .+..+.+
T Consensus       276 yyva~fPFi~lg~~fF~~rfGlS------~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~----------wv~~a~~  339 (459)
T KOG4686|consen  276 YYVAWFPFITLGPMFFQKRFGLS------AVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW----------WVASACI  339 (459)
T ss_pred             HHHHHHHHhhhhHHHHHHhhCCC------hhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh----------hHHHHHH
Confidence            4443333222   2222111111      1122223333344556778999999999998853          2444544


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 006712          465 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA  544 (634)
Q Consensus       465 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  544 (634)
                      ...++-..+.+..                      .+.   .....++|++..+..-..+-.+....|++.-|++-|..+
T Consensus       340 ~tl~~H~~l~Ft~----------------------lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~q  394 (459)
T KOG4686|consen  340 LTLLGHSGLFFTF----------------------LSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQ  394 (459)
T ss_pred             HHHHHhhhHHhhh----------------------ccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHH
Confidence            4444443333322                      122   234567888888888889999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHhhcc
Q 006712          545 LAGGLGCFAASILNSIIKSV  564 (634)
Q Consensus       545 ~~~~ig~~lg~~l~~~v~~~  564 (634)
                      ..+++|-.+.+.+.+.+.+.
T Consensus       395 sIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  395 SIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HHHhhhhhHHhhhhheeecC
Confidence            99999999999999988763

>PRK09952 shikimate transporter; Provisional

Probab=99.48  E-value=3e-12  Score=139.47  Aligned_cols=184  Identities=12%  Similarity=-0.005  Sum_probs=135.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +++++.........++..+.+|.+..+++.|+++.+|++......+.....+...++.++.|+++||+ |||++++.+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~  324 (438)
T PRK09952        246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL  324 (438)
T ss_pred             HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence            34555555555566777788899999999999999999988766666666777788889999999998 99999888876


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++.+.+.....     ..                   .....+++..++.+++.+...+...++++|.+|++.    
T Consensus       325 ~~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----  376 (438)
T PRK09952        325 IGTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----  376 (438)
T ss_pred             HHHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch----
Confidence            65544433333210     00                   223344445566688888888888999999999988    


Q ss_pred             hhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHh
Q 006712          225 THLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG  279 (634)
Q Consensus       225 ~~r~~~~~~-~~~~~~lg~~~~p~i~~~l~~~~--gw~~~f~~~~~~~~i~~~~~~~~  279 (634)
                        |+++.++ +..+..+|+.++|.+.+++.+..  +|...+.+..++.+++.+..+..
T Consensus       377 --r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        377 --RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             --hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence              9999999 44456689999999999997743  48888877777766666665443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.43  E-value=2.2e-12  Score=137.46  Aligned_cols=174  Identities=14%  Similarity=0.065  Sum_probs=134.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +++++.++......++....++.+..+++.|+++++|.+..+.+.....+.++..++.+++|+++||+ |||+.+..+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~  293 (394)
T TIGR00883       215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTV  293 (394)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHH
Confidence            34444567777777788888888889999999999999999999999999999999999999999998 99998876655


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..+..........     ..                   .+...+++..++.|++.+...+...+++.|.+|++.    
T Consensus       294 ~~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~----  345 (394)
T TIGR00883       294 LAALLAVPLLMALL-----DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV----  345 (394)
T ss_pred             HHHHHHHHHHHHHh-----cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc----
Confidence            44433211111100     00                   244556667788888888889999999999999998    


Q ss_pred             hhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHH
Q 006712          225 THLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM  269 (634)
Q Consensus       225 ~~r~~~~~~-~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~  269 (634)
                        |++++++ +..+..+|..++|.++|++.+..| |++.++...++.
T Consensus       346 --~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       346 --RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             --eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence              8888888 455677899999999999999888 887766655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.43  E-value=9.5e-12  Score=141.63  Aligned_cols=134  Identities=9%  Similarity=0.002  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHH
Q 006712          109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML  188 (634)
Q Consensus       109 ~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (634)
                      ....+..++..++.+++|+++||+ |||++++++.++..++.+++++.                            .+..
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~  649 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSES  649 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHH
Confidence            334456678889999999999998 99999999998888887777665                            3445


Q ss_pred             HHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 006712          189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (634)
Q Consensus       189 ~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~  268 (634)
                      .+++.+++.|++.++..+...++++|++|++.      |++++++.+....+|+++||.+++++... +...+|++.+++
T Consensus       650 ~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~  722 (742)
T TIGR01299       650 AMIALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAA  722 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence            56677778888888888999999999999999      99999999999999999999999988664 455677776666


Q ss_pred             HHHHHHHHHH
Q 006712          269 MGISNMLFFI  278 (634)
Q Consensus       269 ~~i~~~~~~~  278 (634)
                      .+++.++.++
T Consensus       723 lll~~ll~~~  732 (742)
T TIGR01299       723 LACGGLLALK  732 (742)
T ss_pred             HHHHHHHHHh
Confidence            5555554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.42  E-value=6.6e-12  Score=133.62  Aligned_cols=190  Identities=13%  Similarity=0.040  Sum_probs=145.9

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccch-hHH
Q 006712           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT  138 (634)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GR-r~~  138 (634)
                      ....+.+||.+++..+.+++..+.++...+..-.|+++ +.+.+.+..|+++++..++..++.|..|+.+.|. |+ |+-
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P  104 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP  104 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence            45567899999999999999998888777777788875 4677888899999999999999999999999997 74 777


Q ss_pred             HHHHHHHHHHHHHHH-HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC
Q 006712          139 IAIFTTIYLAGLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (634)
Q Consensus       139 i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (634)
                      ++.+.++.++|.++. .+...     |.                   ...+.++++|++.|+|.|. .+..-+|+++...
T Consensus       105 li~s~ii~~~g~llY~~l~~~-----~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~  159 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYV-----PN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADAST  159 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----cc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccC
Confidence            788888888888887 44321     11                   3678899999999999777 4678899999888


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh----hc---------cchHHHHHHHHHHHHHHHHHHHHhccc
Q 006712          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME---------HGWGSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~----~~---------~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                      .++      |.++++....+..+|..+||.+...+.    ..         .-+..+-|+.++..++.++++.+..++
T Consensus       160 ~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  160 VED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             ccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            888      999998877777777777776654332    11         113456667776666666665555444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=5.7e-12  Score=137.92  Aligned_cols=178  Identities=17%  Similarity=0.137  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHH-HHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIYL  147 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~-GRr~~i-~~~~~~~~  147 (634)
                      .++...+..++.....+++..++|.|++++.|++..+++.....+.++..++.+++|+++||+. |||+.. .....+..
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~  333 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  333 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence            4677777777777888888899999999999999999999999999999999999999999972 334322 22223333


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++.+.+.+.       +.                   .+....++..++.|.+..........+..|.+|++.      |
T Consensus       334 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~  381 (452)
T PRK11273        334 IATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------A  381 (452)
T ss_pred             HHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------h
Confidence            333222221       00                   233334444555555444433444556789999998      9


Q ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 006712          228 DRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~-~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (634)
                      ++++++.+...++|+.+ +|.+.|++.+..||+..|++..+..+++++.....
T Consensus       382 g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        382 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888665 79999999999999999988877766665554433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.40  E-value=2.3e-11  Score=130.77  Aligned_cols=165  Identities=13%  Similarity=0.067  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 006712           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (634)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~  159 (634)
                      +..++++.+..+++.|+.+ .|.  .+.++..+.+.++..++.++.|+++||+ |||+.+..+..+..++..++...   
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---  299 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA---  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh---
Confidence            3455666677778888764 455  3456667788888889999999999998 99999988888777776666554   


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHH
Q 006712          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (634)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  239 (634)
                                               .+.+.+++++++.|++.+...+.......|.+|++.      |++..++++...+
T Consensus       300 -------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  348 (399)
T PRK05122        300 -------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLD  348 (399)
T ss_pred             -------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence                                     345566777889999999888888888889999888      9999999999999


Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 006712          240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       240 lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                      +|..++|.+.|++.+..||++.|++.+++.+++++......++
T Consensus       349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999998999999998887777766665554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.40  E-value=9.6e-12  Score=131.71  Aligned_cols=169  Identities=15%  Similarity=0.076  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+......++..+.......+.+.|. +++|.+..+.+...+.+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence            33344444444455544555556664 56899999999999999999999999999999998 99999999888888777


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .++.+...                          .+...+++..++.|++.+...+..+++..|.+|+++      |++.
T Consensus       285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~  332 (377)
T TIGR00890       285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN  332 (377)
T ss_pred             HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence            66655310                          122334455677888888888888899999999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~  273 (634)
                      +++++...++|..++|.+.+++.+..||++.|++.+++.++++
T Consensus       333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988776655543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.39  E-value=2.8e-11  Score=128.63  Aligned_cols=163  Identities=10%  Similarity=0.041  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 006712           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (634)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~  158 (634)
                      ++..........+++.|+.+++|.+..+.++......+...++.+++|+++||+ |||+++.++.++..++.......  
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--  285 (375)
T TIGR00899       209 TLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD--  285 (375)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH--
Confidence            333333444556778899999999999999888887777788889999999998 99999888776555444333332  


Q ss_pred             hcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHH
Q 006712          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (634)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~  238 (634)
                                                .+.+.+++.+++.|++.+...+....+..|.+|+ +      |++++++++...
T Consensus       286 --------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~  332 (375)
T TIGR00899       286 --------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTG  332 (375)
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHH
Confidence                                      3556666777888998888888888889998875 3      569999999999


Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006712          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       239 ~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      ++|..++|.+++++.+..||+..|++.++..+++.+...
T Consensus       333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       333 RVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999989999999988877666665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.39  E-value=2.3e-11  Score=127.19  Aligned_cols=171  Identities=20%  Similarity=0.233  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhH-HHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG  149 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~-~i~~~~~~~~~~  149 (634)
                      ++......++..........+.+.|+.+.+|.+..+.++......++..++.++.|+++||+ |||+ .+.++.++..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence            34444555666666677777888888888899999999999999999999999999999998 9999 999999888888


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+.+...                            .+...+++..++.|++.+...+...++..|.+|+++      |++
T Consensus       256 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  301 (352)
T cd06174         256 LLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT  301 (352)
T ss_pred             HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence            8777765                            456777888899999999999999999999999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (634)
                      .+++++...++|..++|.+.+++.+..+|++.|++.++..+++.+..
T Consensus       302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988999999998888776666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03699 putative transporter; Provisional

Probab=99.39  E-value=2e-11  Score=131.09  Aligned_cols=171  Identities=15%  Similarity=0.144  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .++...+..++...+.+++..++|.|+++++|+|..+++...+.+.++..++.+++|+++||+ |||+++.....+..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence            355555566666677788889999999999999999999999999999999999999999998 9999888777665554


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ..+....                            .+...+.+..++.|++.+...+...++..|..|.+       +++
T Consensus       285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~  329 (394)
T PRK03699        285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK  329 (394)
T ss_pred             HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence            4444332                            23444555667888888888888888888877643       456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (634)
                      ..++.....++|..++|.+.|++.+..|++..|++..++.+++.++.
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            67777778889999999999999999999999887776665555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.38  E-value=3.6e-11  Score=127.83  Aligned_cols=179  Identities=12%  Similarity=0.001  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYLA  148 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~-i~~~~~~~~~  148 (634)
                      .++......++.....+.+..+++.|+.+.+|.+..+.++......++..++.+++|+++||+ |||+. +........+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~  294 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII  294 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence            466677777888888888888999999999999999999999999999999999999999998 98861 1111111111


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +.+...+.......  .                   .+....+. ..+.+.+..+..+...++.+|.+|+++      |+
T Consensus       295 ~~~~~~~~~~~~~~--~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g  346 (399)
T TIGR00893       295 AGLVLSLLMFATNY--V-------------------NIPYAALA-LVALGFFGLGAGAIGWALISDNAPGNI------AG  346 (399)
T ss_pred             HHHHHHHHHHHhcc--c-------------------hhHHHHHH-HHHHHHhchhhhhHHHHHHHhhcChhH------HH
Confidence            11111111000000  0                   12233333 333333333478999999999999998      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~  277 (634)
                      +.+++++...++|..++|.+.+++.+..| |...|++.++..+++.+..+
T Consensus       347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888 99998887776666555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.37  E-value=2.6e-11  Score=132.04  Aligned_cols=177  Identities=16%  Similarity=0.120  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL  147 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~G--Rr~~i~~~~~~~~  147 (634)
                      .++.+.+..++..+.++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+  |++......+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            35666666666677777888899999998999999999999999999999999999999999732  2332222221111


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      +....+...       +.                   .+.....+..++.|++............+|.+|++.      |
T Consensus       324 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  371 (434)
T PRK11663        324 LSVGSLWLM-------PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A  371 (434)
T ss_pred             HHHHHHHHc-------cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence            121111111       00                   122333333444555444334444567789999888      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      ++..++.+...++|..++|.+.+++.+..||+..|++.+++.+++.+....
T Consensus       372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887776665554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.36  E-value=7.5e-12  Score=112.42  Aligned_cols=132  Identities=20%  Similarity=0.230  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHH
Q 006712          112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (634)
Q Consensus       112 ~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (634)
                      +.+.++..++.++.|+++||+ |||+.+..+..+..++.+.+...                            .+.+.+.
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~   55 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLI   55 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHH
Confidence            445677888999999999998 99999999988888887776664                            4567788


Q ss_pred             HHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 006712          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (634)
Q Consensus       192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i  271 (634)
                      +.+++.|++.+...+...++..|.+|+++      |++..++++....+|..++|.+.+++.+..+|++.|++.....++
T Consensus        56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (141)
T TIGR00880        56 IARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA  129 (141)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence            88999999999999999999999999998      999999999999999999999999999888999999887766655


Q ss_pred             HHHHHHH
Q 006712          272 SNMLFFI  278 (634)
Q Consensus       272 ~~~~~~~  278 (634)
                      ..+....
T Consensus       130 ~~~~~~~  136 (141)
T TIGR00880       130 AFILLAF  136 (141)
T ss_pred             HHHHHhh
Confidence            5554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.35  E-value=5.5e-11  Score=128.01  Aligned_cols=165  Identities=12%  Similarity=0.042  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 006712           79 MAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (634)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~---~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~  155 (634)
                      +........+..+++.|+.+..+....   ..+.+...+.++..++.++.|+++||+ |||+++.++.++..++.+.+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  307 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF  307 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence            333444445566778888765443222   245555666777888899999999998 9999999988877766665554


Q ss_pred             hhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHH
Q 006712          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (634)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  235 (634)
                      .                            .+.+.+++.+++.|++.+...+...+++.+..|++.      |++.+++++
T Consensus       308 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~  353 (408)
T PRK09874        308 V----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQ  353 (408)
T ss_pred             h----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHH
Confidence            3                            345667788889999999999999999999999888      999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       236 ~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      ...++|..+||.++|++.+..||++.|++.+++.+++.+..+.
T Consensus       354 ~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        354 SFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877766665544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=8.1e-11  Score=126.75  Aligned_cols=166  Identities=10%  Similarity=-0.018  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~  155 (634)
                      ...++....++.+..++|.|+.+ .|++..+.+.....+.++..++.++.|+++||+ |||+.+..+.+...++...+..
T Consensus       227 ~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~  304 (406)
T PRK11551        227 ISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAA  304 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHh
Confidence            33444455666777788888865 799999999999999999999999999999998 9999988876665555444443


Q ss_pred             hhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHH
Q 006712          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (634)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  235 (634)
                      .                            .+...+++..++.|++.++..+...++..|.+|+++      |++.+++++
T Consensus       305 ~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~  350 (406)
T PRK11551        305 A----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAV  350 (406)
T ss_pred             c----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHH
Confidence            2                            234455566677888888888889999999999999      999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHH
Q 006712          236 LSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       236 ~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~  277 (634)
                      ....+|..++|.+.|++.+..+ |...+++...+.+++.+..+
T Consensus       351 ~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        351 AVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987654 55566655555555444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.35  E-value=1.9e-10  Score=119.26  Aligned_cols=410  Identities=11%  Similarity=-0.010  Sum_probs=222.4

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Q 006712           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (634)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~  141 (634)
                      +.-+++|.-++...+..+.+.+-. .-......|..+.++ +...+-|...+|++.+......+-|+.|++ |-|.+.++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qW-I~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQW-IQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchh-eeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHH
Confidence            344566765555555555543322 111233456677777 777888999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhH--HHHHHHHHHHHHhhhchhhhHHHHhhccCCCC
Q 006712          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM--LYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (634)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (634)
                      +.++..+|..+=..+.. +...                     +..  ...+.+..+.+...-.+...-+-+-+-+|+++
T Consensus       115 gt~ln~iGa~Ir~iss~-p~v~---------------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~  172 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSL-PFVP---------------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD  172 (480)
T ss_pred             HHHHHHHHHHHhhhccC-cccc---------------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc
Confidence            99999999888776632 1111                     122  25566666766666655555555667789999


Q ss_pred             CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHH--HHHHHHHHHHHHHHHHHhccccccCCCCCC
Q 006712          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSA--FGALAIAMGISNMLFFIGTPLYRHRLPGGS  291 (634)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~------~~gw~~~--f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  291 (634)
                      +      |.++..+-.++..+|.+++.++...+..      ...|...  |+....+.++.+++..+.+++.+..||.  
T Consensus       173 q------ra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps--  244 (480)
T KOG2563|consen  173 Q------RAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS--  244 (480)
T ss_pred             h------hhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc--
Confidence            8      9999888777766776666655544433      2345542  3323333333333333332222211211  


Q ss_pred             cHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhH
Q 006712          292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEE  371 (634)
Q Consensus       292 ~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  371 (634)
                                             ...            .     .+. +.++.                         +.
T Consensus       245 -----------------------~s~------------~-----~~~-~~~f~-------------------------~s  258 (480)
T KOG2563|consen  245 -----------------------ASQ------------A-----ALQ-DASFP-------------------------KS  258 (480)
T ss_pred             -----------------------hhH------------h-----hhh-cCcHH-------------------------HH
Confidence                                   100            0     000 00000                         11


Q ss_pred             HHHHHhHhhHHHHHHHHHHHHHhhhhH--HHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCC
Q 006712          372 VKTLVRLVPIPACTIMLNVILTEFLTL--SVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGH  449 (634)
Q Consensus       372 ~k~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~  449 (634)
                      .++.+.-..+.+..+.+.......+..  ...+... ..+..  +...+.......+..++...+.+.+.||..+-+   
T Consensus       259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~--~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk---  332 (480)
T KOG2563|consen  259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYE--GVFAGYIGALMIVAGMLGALASGIIADKTKKFK---  332 (480)
T ss_pred             HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCC--ccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH---
Confidence            111111111111112222211111111  1111111 11111  123455555666667777777888887643221   


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006712          450 PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYE  529 (634)
Q Consensus       450 ~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~  529 (634)
                             ..+.+-.....++.+++......                  +..+ +++.....++|..+....|...|+..|
T Consensus       333 -------~~~~v~~~~~~v~~~~l~~~t~~------------------~~~~-viv~~t~~~~g~~~~~~~Pig~ElgvE  386 (480)
T KOG2563|consen  333 -------LTTLVLYLFALVGTLMLLTCTLF------------------LGDS-VIVFTTCGLLGFFGTGYLPIGFELGVE  386 (480)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhhcc------------------CCce-EehhhhHHHHHHhhcCCCCcceeeeee
Confidence                   11222222222221111111110                  1022 333444456788888889999999999


Q ss_pred             hcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          530 EAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  609 (634)
Q Consensus       530 ~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~  609 (634)
                      ..=+..-+...|+.++..++.+.+-..+.+...+..     +..+|         ....-+.++..+++.+.+..++..+
T Consensus       387 ~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~-----~~~~~---------~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  387 TTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL-----GPPGN---------TFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             eccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc-----CCCCC---------CccchhHhHHHHHHHHHHHhhhhhh
Confidence            877788899999999998888888887777665421     11222         0111244555666666666777666


Q ss_pred             ceecccc
Q 006712          610 YKYRSEQ  616 (634)
Q Consensus       610 ~~~~~~~  616 (634)
                      ++++..|
T Consensus       453 y~R~~~e  459 (480)
T KOG2563|consen  453 YRRLRAE  459 (480)
T ss_pred             HHhHhhh
Confidence            6665444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.35  E-value=5.1e-11  Score=128.96  Aligned_cols=177  Identities=11%  Similarity=0.045  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      ...+..++..........+.+.|+.+ .|.+        ....+...+...+...++.++.|+++||+ |||+++.++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~  289 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLV  289 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            34444444444444455666778754 4544        35668889999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +..++..++.....                        +..+...+++.+++.|++.+...+....+++|.+|++.    
T Consensus       290 ~~~v~~~l~~~~~~------------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~----  341 (418)
T TIGR00889       290 AWALRFGFFAYGDP------------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI----  341 (418)
T ss_pred             HHHHHHHHHHHcCc------------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----
Confidence            88877666655310                        00234566778899999999988999999999999998    


Q ss_pred             hhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          225 THLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       225 ~~r~~~~~~~~-~~~~lg~~~~p~i~~~l~~~------~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                        |++.+++++ ....+|..+||.++|++.+.      +||++.|.+.+++.++..+++....+
T Consensus       342 --~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       342 --RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence              999999987 56789999999999999886      46999998887776666555544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.34  E-value=9.5e-10  Score=113.68  Aligned_cols=107  Identities=15%  Similarity=-0.005  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhCC---Ch----hHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006712           90 VNMVTFMFYVMHK---SF----ADSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGLTGITLCATMKV  161 (634)
Q Consensus        90 ~~l~~yl~~~~~~---s~----~~~~~~~~~~~~~~~~~~l~~G~lsDr~~G-Rr~~i~~~~~~~~~~~~~~~~~~~~~~  161 (634)
                      ..+|.|+++..+.   ++    +..+...++..+..++..|+-|-++|+. | ||+.+.+..++-++.+..+++...   
T Consensus        36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~---  111 (438)
T COG2270          36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP---  111 (438)
T ss_pred             ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence            3467888877654   33    3456677777888888999999999987 8 555666666666666666666510   


Q ss_pred             cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcc
Q 006712          162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (634)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~  222 (634)
                                            +..++..++...+..++..+......+++.|..++++.+
T Consensus       112 ----------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~  150 (438)
T COG2270         112 ----------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG  150 (438)
T ss_pred             ----------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC
Confidence                                  024455555667788888888899999999999998855

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=1.5e-10  Score=124.22  Aligned_cols=175  Identities=15%  Similarity=0.051  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+.+.+..++..++++++..+++.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence            4555555566677888898999999976 899999999999999999999999999999998 99999988877776665


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC-CCcchhhhhhh
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR  229 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~  229 (634)
                      ..+....                           .+...+.  .++.|++.+...+.......|.+++ ++      |++
T Consensus       285 ~~~~~~~---------------------------~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~  329 (393)
T PRK09705        285 CGFIWLP---------------------------LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGK  329 (393)
T ss_pred             HHHHHcc---------------------------chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHH
Confidence            5443320                           1112222  2456888888888877777888864 45      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhccc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                      .+++.+...+++..++|.+.|++.+..| |...|++.....++.++......++
T Consensus       330 ~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        330 LVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999876 7888888777666666555554443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.34  E-value=1.1e-09  Score=113.43  Aligned_cols=84  Identities=10%  Similarity=0.027  Sum_probs=71.1

Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Q 006712          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------  255 (634)
Q Consensus       185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~---------  255 (634)
                      .++..++++.+++|.|.+..++...++++++.++++      +.+.+++......+|..++|++++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            578899999999999999999999999999999988      99999999999999999999999987632         


Q ss_pred             -------cchHHHHHHHHHHHHHHHH
Q 006712          256 -------HGWGSAFGALAIAMGISNM  274 (634)
Q Consensus       256 -------~gw~~~f~~~~~~~~i~~~  274 (634)
                             ..|+++|++.+....+..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3688888865554433333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.33  E-value=1.7e-10  Score=123.71  Aligned_cols=173  Identities=14%  Similarity=-0.036  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~  151 (634)
                      +...+..++.....++...+++.|+.+.+|.+..++++..+.+.++..++.++.|+++||+ |||+.+ .+..+..++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~  285 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLL  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHH
Confidence            3334444555556666667788899888999999999999999999999999999999998 987654 44444333333


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      ......                           .+...+++..++.|++.+...+...+.+.+..| +.      |++++
T Consensus       286 ~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~  331 (390)
T PRK03545        286 LLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAM  331 (390)
T ss_pred             HHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHH
Confidence            222210                           345666777788888888777777788888766 45      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 006712          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       232 ~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      ++++....+|..+||.++|++.++.|++..|++.+.+.+++++......
T Consensus       332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            9998889999999999999999999999999988887777666655443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.32  E-value=3.7e-11  Score=130.16  Aligned_cols=161  Identities=12%  Similarity=0.089  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 006712           83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (634)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~  159 (634)
                      ..+......++.|+.+.+   +.+..+.+.+.++..++..++.+++|+++||+ |||+.+.++.++..++..++.++   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~---  312 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA---  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc---
Confidence            333344445677776543   56667889999999999999999999999998 99999999888888877777664   


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH-HHHHH
Q 006712          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV  238 (634)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~-~~~~~  238 (634)
                                               .+.+.+++.+++.|++.+...+....++.|.+|++.      |++..+. ++...
T Consensus       313 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~  361 (420)
T PRK09528        313 -------------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK  361 (420)
T ss_pred             -------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence                                     456777888889999988888888899999999888      7777665 67778


Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       239 ~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      .+|..++|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus       362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999877766555544433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=2.2e-10  Score=122.47  Aligned_cols=168  Identities=9%  Similarity=-0.082  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .++...+..++...+.+...++.+.|+++ +|.+..+.+.+.+...++..+..++.|++.||+ |+|+.+.++.++..+.
T Consensus       206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~~  283 (382)
T TIGR00902       206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVGR  283 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHHH
Confidence            35666666777777888888899999965 899999999999999999999999999999998 9999999999999988


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ...++.+                            .+.+.+++..+++|+..+...+....++.+. |+++      |++
T Consensus       284 ~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~  328 (382)
T TIGR00902       284 WAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAK  328 (382)
T ss_pred             HHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHH
Confidence            8877765                            6778888899999999999999999999988 8877      899


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 006712          230 FFNFFYL-SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       230 ~~~~~~~-~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (634)
                      +.++++. +..+|..++|.++|++.+..|+ ..|++.+...++++++
T Consensus       329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999864 6789999999999999999886 5666666655555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.31  E-value=7e-11  Score=130.84  Aligned_cols=149  Identities=16%  Similarity=0.117  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 006712           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (634)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (634)
                      .+..++|.|+++++|++..+++++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++.....       . 
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-------~-  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG-------G-  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc-------c-
Confidence            4567889999989999999999999999999999999999999998 999998887766555443333220       0 


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 006712          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (634)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p  246 (634)
                                        .+.+.+.+..++.++...+..+..++++.|.+|++.      |++.+++++...++|..+||
T Consensus       364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp  419 (496)
T PRK03893        364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP  419 (496)
T ss_pred             ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence                              233334444444444444455677888999999988      99999999999999999999


Q ss_pred             HHHHHHhhccchHHHHHHHHHH
Q 006712          247 TLVVYIQMEHGWGSAFGALAIA  268 (634)
Q Consensus       247 ~i~~~l~~~~gw~~~f~~~~~~  268 (634)
                      .++|++.+..||+..+.+.+..
T Consensus       420 ~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        420 ILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHHHHhccCChHHHHHHHHHH
Confidence            9999999999998877655443

>PRK12382 putative transporter; Provisional

Probab=99.31  E-value=1.1e-10  Score=125.29  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhh
Q 006712           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (634)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~  159 (634)
                      +..+.+..+..+.+.|+.+ .|++.  .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.++..+.   
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~---  299 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA---  299 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc---
Confidence            3345555666777788764 46553  45666777888889999999999998 99999999888888777666553   


Q ss_pred             cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHH
Q 006712          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (634)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~  239 (634)
                                               .+...+++..++.|++.+...+...+...|.+|+++      |++.+++++...+
T Consensus       300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  348 (392)
T PRK12382        300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD  348 (392)
T ss_pred             -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence                                     345666777888999999888888889999999988      9999999999999


Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       240 lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      +|..++|.+.+++.+..||++.|.+.+++.+++.++.+.
T Consensus       349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999888777666665543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.31  E-value=6.9e-11  Score=126.75  Aligned_cols=165  Identities=13%  Similarity=0.058  Sum_probs=128.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      ++|..+.......++..........+++.|+.+++|++..+++++.+.+.++..++.++.|+++||+ |||+.+.++.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~  313 (405)
T TIGR00891       235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA  313 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence            4444444444444455555566777889999999999999999999999999999999999999998 999998888765


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..+........       .                    .+.+.+.++.++.+++.++..+...+++.|.+|++.     
T Consensus       314 ~~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  361 (405)
T TIGR00891       314 GQLLIIPVFAI-------G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ-----  361 (405)
T ss_pred             HHHHHHHHHHh-------C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence            43322222111       0                    244555566667777777778888899999999998     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA  264 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~  264 (634)
                       |++.+++.+...++|..++|.+.|++.+..| |...+..
T Consensus       362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence             9999999999999999999999999999888 7766554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.30  E-value=1.3e-10  Score=125.72  Aligned_cols=162  Identities=12%  Similarity=-0.026  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 006712           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (634)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~  164 (634)
                      .+++..++|.|+.+.+|.+..+.+++.+.+.++..++.++.|+++||. ++++.+..+.++..++.+++.+.        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            345667889999888999999999999999999999999999999986 88888888877777776665543        


Q ss_pred             CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q 006712          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (634)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~  244 (634)
                                          .+.....++.++.|++.+...+...+++.|.+|++.      |++.+++++...++|..+
T Consensus       310 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~  363 (417)
T PRK10489        310 --------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI  363 (417)
T ss_pred             --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence                                445566677788888888877888899999999988      999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       245 ~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                      ||.+.|++.+..|++..+++.+.+..+..++.....+
T Consensus       364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999989888887666554444444433333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.30  E-value=1.7e-10  Score=125.57  Aligned_cols=161  Identities=15%  Similarity=0.068  Sum_probs=115.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      +|+.........++....++.+..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||++++.+.++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~  314 (434)
T PRK15075        236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA  314 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            444343444445556677888889999999998999999999888888899999999999999998 9999888765443


Q ss_pred             HHHHHH-HHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          147 LAGLTG-ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       147 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      .+...+ .....      ..                   .+.....+..++.+++.+...+....+..|.+|++.     
T Consensus       315 ~~~~~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~-----  364 (434)
T PRK15075        315 ILTAYPALSWLV------AA-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV-----  364 (434)
T ss_pred             HHHHHHHHHHHH------cC-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence            322111 11110      00                   222333444455667777767777788999999999     


Q ss_pred             hhhhHHHHHHH-HHHHHHHHHHHHHHHHhhccchH
Q 006712          226 HLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWG  259 (634)
Q Consensus       226 ~r~~~~~~~~~-~~~lg~~~~p~i~~~l~~~~gw~  259 (634)
                       |++++++.+. +..+++.++|.+.+++.+..|+.
T Consensus       365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence             9999998544 44556888999999999988853

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.29  E-value=7.1e-11  Score=128.72  Aligned_cols=182  Identities=15%  Similarity=0.076  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .++...+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            356666666666777788889999999998999999999999999999999999999999998 7544323333222221


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+......    ..+.                   .+.....+..++.|++..+..........|.+|++.      |++
T Consensus       331 ~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  381 (438)
T TIGR00712       331 TIAVIVYW----MNPA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  381 (438)
T ss_pred             HHHHHHHH----hcCC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence            11111100    0000                   122333344455555544433343456789999988      999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          230 FFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       230 ~~~~~~~~~~lg~-~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                      +.++++...++|+ .++|.+.|++.+..||.+.|++..+..+++++..+...+
T Consensus       382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999988877764 689999999999899999998877766666655554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.28  E-value=3.7e-10  Score=122.90  Aligned_cols=180  Identities=11%  Similarity=0.046  Sum_probs=116.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      +++..+......+.....+|++..++|.|+.+.+|++..+++...+...++..++.++.|+++||+ |||+++.++.++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~  319 (432)
T PRK10406        241 NRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLA  319 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence            344333333334445678889999999999999999999999888888888888899999999998 9999887766544


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .+..........     ..                   .+....+....+.+++.+...+....+.+|.+|++.      
T Consensus       320 ~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------  369 (432)
T PRK10406        320 ALFTVPILSALQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------  369 (432)
T ss_pred             HHHHHHHHHHHH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------
Confidence            333322211100     00                   122222222222223334444567788999999999      


Q ss_pred             hhhHHHHHHHH-HHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 006712          227 LDRFFNFFYLS-VTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       227 r~~~~~~~~~~-~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (634)
                      |++++++.+.. ..+++...|.+.+++.. .| |...+++.++..+++++..++
T Consensus       370 r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        370 RALGVGLSYAVANALFGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             cchhhhHHHHHHHHHHHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999996654 44445568888886644 45 555666555555555444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.28  E-value=1.1e-09  Score=121.55  Aligned_cols=202  Identities=14%  Similarity=0.115  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~  155 (634)
                      +..+...+.. +......+-+.+.++++.++.|++.+.|-++..+...+..+.+-|. =|-|.+-++++++.+|.+++++
T Consensus       104 ~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgsll~al  181 (735)
T KOG3626|consen  104 LAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGSLLFAL  181 (735)
T ss_pred             HHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHHHHHhC
Confidence            3334444444 6667778889999999999999999999999999999999999986 6778888999999999999887


Q ss_pred             hhhhc-ccCCCC----------------Cccccc----ccccCCCC---CccchhHHHHHHHHHHHHHhhhchhhhHHHH
Q 006712          156 CATMK-VFMPNQ----------------DNCDRI----SQLLGSCE---PAKSWQMLYLYTVLYITGFGAAGIRPCVSSF  211 (634)
Q Consensus       156 ~~~~~-~~~~~~----------------~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~  211 (634)
                      ..++. .....+                +.|++.    ++.+++|+   ..+..-+.+++++.++.|+|...+++...+|
T Consensus       182 PHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisY  261 (735)
T KOG3626|consen  182 PHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISY  261 (735)
T ss_pred             hHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcc
Confidence            53221 000000                001110    11222332   2222233467788999999999999999999


Q ss_pred             hhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------------------ccc-hHHHHHHHHHHHHHH
Q 006712          212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EHG-WGSAFGALAIAMGIS  272 (634)
Q Consensus       212 ~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~------------------~~g-w~~~f~~~~~~~~i~  272 (634)
                      +=|-..+++      -...+++.+....+|+++|.++++++..                  +.| ||..|++.+.+.++.
T Consensus       262 iDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~  335 (735)
T KOG3626|consen  262 IDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS  335 (735)
T ss_pred             ccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            988888777      7889999999999999999999987642                  133 899999999888888


Q ss_pred             HHHHHHhcccccc
Q 006712          273 NMLFFIGTPLYRH  285 (634)
Q Consensus       273 ~~~~~~~~~~~~~  285 (634)
                      .+.+++..+..++
T Consensus       336 a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  336 AVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHhCcccCcc
Confidence            7777776665443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.27  E-value=4.7e-10  Score=122.29  Aligned_cols=186  Identities=13%  Similarity=0.049  Sum_probs=150.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchh--HHHHHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTI  145 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr--~~i~~~~~~  145 (634)
                      -|.+..-++..++.+-+...+......|.++++|++..+...+.....+...++.+++|++.||+ |-|  ++++++.++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            35667777777888888888999999999999999999999999999999999999999999998 988  888888777


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      +.+..+.-.+. ..+.....                   .+.+.+++.-++.|+..|..++..-++.+|+.|+++     
T Consensus       359 ~~~i~~~g~~G-~~~~~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~-----  413 (477)
T PF11700_consen  359 WIIIPLYGLFG-FWPSFFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR-----  413 (477)
T ss_pred             HHHHHHHHHHH-hhhcccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch-----
Confidence            64322222220 00000000                   355667777789999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                       .+.+|++|.+..-..+.+||++.+.+.+.+| -|+++....++.+++++++....
T Consensus       414 -e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  414 -EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence             9999999999999999999999999998876 88888888877777777765543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.27  E-value=4.2e-10  Score=120.24  Aligned_cols=154  Identities=16%  Similarity=0.139  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006712           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (634)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (634)
                      +.+.....++|.|+++ .|.+.++.+...+.+.++..++.++.|+++||+ |||+++..+.++..++..... .      
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------  284 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------  284 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence            3444455677888865 699999999999999999999999999999998 999999888777766554332 1      


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 006712          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (634)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~  242 (634)
                                            .  ...+..+++.|++.+...|...+...|..|+++      ++...+.++...++|.
T Consensus       285 ----------------------~--~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~  334 (381)
T PRK03633        285 ----------------------Q--AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS  334 (381)
T ss_pred             ----------------------h--HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence                                  1  123345667777777778999999999998877      7777888888899999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 006712          243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       243 ~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (634)
                      .+||.++|++.++++|++.|.+.+.+.++..+.
T Consensus       335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            999999999999999999998877666554433

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=5.6e-10  Score=120.25  Aligned_cols=175  Identities=14%  Similarity=0.050  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAG  149 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~-~~~~~~~~~  149 (634)
                      ++...+..++...++++...++|.|++ ++|++..+.+.+...+.++..++.++.|+++||+ |||+.+. .+.+...++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~  301 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence            555556667777888888999998885 5899999999999999999999999999999998 9888764 233333333


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+.+.....   ...                    .+.+..++..++.|++.+...+. .+...|..| ++      |++
T Consensus       302 ~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g~  350 (402)
T TIGR00897       302 TLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KGA  350 (402)
T ss_pred             HHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hHH
Confidence            222222100   000                    23455566677888887776554 456667654 46      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      .+++++...++|..++|.+++++.+..||...|++.+++.+++.++..+
T Consensus       351 ~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       351 AMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888776665554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.25  E-value=8.2e-10  Score=122.01  Aligned_cols=172  Identities=10%  Similarity=0.070  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHH-HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 006712           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (634)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~-~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~  156 (634)
                      .++..++.+....+.+.|+.+++|++.++.++... ...++..++.+++|+++||+ |||+.+.++.++..++...+...
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l  309 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLL  309 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566677888988889999999999875 55678999999999999998 99998877666555544333221


Q ss_pred             hhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHH
Q 006712          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (634)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~  236 (634)
                      ..    ..                    .+...+.+..++..++.|...+...++..++.+++.      +++.+++.+.
T Consensus       310 ~~----~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s  359 (491)
T PRK11010        310 SI----TD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA  359 (491)
T ss_pred             Hh----cc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence            10    00                    233344445556555556556677888889999888      8888999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 006712          237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       237 ~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      ..++|..+++.+.|++.+..||+..|.+..++.+++++.....+
T Consensus       360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999998888999999999999999888888777766665543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.23  E-value=2e-10  Score=121.66  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH--HHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL  147 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~--~~~  147 (634)
                      .++.+.+..++.....+++..+++.|+.+.+|++..+++...+.+.++..++.++.|+++||..+||+..+....  +..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            356666667777777778888999999999999999999999999999999999999999986344443322211  111


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++.......       +.                   .+.....+..++.|+...+..+....+..|.+|++.      |
T Consensus       297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  344 (379)
T TIGR00881       297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A  344 (379)
T ss_pred             HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence            111111110       00                   234445555667777666666777788999999998      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f  262 (634)
                      +++.++++...++|..++|.+.|++.+..||++.|
T Consensus       345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999999998654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.2e-09  Score=113.97  Aligned_cols=177  Identities=15%  Similarity=0.086  Sum_probs=146.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .++.....+++...+.|...+|+-.|+++..|+|.+..+++...|.++..++.+++|+++||  +.|+++.....+..+.
T Consensus       212 ~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~  289 (394)
T COG2814         212 GVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALA  289 (394)
T ss_pred             hHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHH
Confidence            37888888999999999999999999999999999999999999999999999999999998  7888888887777777


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ...+.+..                           .+.+...+..++.|+..+........-.++ .-++.      ++.
T Consensus       290 ~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~  335 (394)
T COG2814         290 LLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADL  335 (394)
T ss_pred             HHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHH
Confidence            66666542                           344555555566777766665666666666 33455      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                      +.+++..+.|+|..+|..++|.+.+++|+....++.++..++++++.+...+.
T Consensus       336 a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         336 AGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998888888776665443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.22  E-value=3.1e-10  Score=124.32  Aligned_cols=170  Identities=7%  Similarity=-0.023  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHH--
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIY--  146 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~-~GRr~~i~~~~~~~--  146 (634)
                      .++......++..++++....+++.|+.+ +|++..++++..+.+.++..++.+++|+++||. +++|+...++....  
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            35666666677777888888889999864 799999999999999999999999999999984 24454444433222  


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .++.+++...                            .+.+.+++.+++.|++.+...++..+++.|.+|+++      
T Consensus       321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------  366 (455)
T TIGR00892       321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------  366 (455)
T ss_pred             HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence            2333333332                            456777888899999999999999999999999988      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHH
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNM  274 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~-gw~~~f~~~~~~~~i~~~  274 (634)
                      +++.+++++...++|..+||.++|++.+.. +|++.|++.++..+++.+
T Consensus       367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999998877 599999888776555544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.21  E-value=3.5e-10  Score=123.70  Aligned_cols=186  Identities=13%  Similarity=0.007  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++...+..+........+..+ ..++.+++|++..++++....+.++..++.+++|+++||+ |||+.+.++.++..++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       286 FLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence            333333333333333333334 4445567899998889999999999999999999999998 99999999988777776


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      +++.+.....  .+.               .....+...+....++.+....+..+....+..|.+|++.      |+++
T Consensus       364 ~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~  420 (481)
T TIGR00879       364 FVLGILGASF--VTG---------------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKG  420 (481)
T ss_pred             HHHHHHhhcc--cCC---------------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHH
Confidence            6665321100  000               0000122222222223333333344667778899999998      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                      .++.+...++|..++|.+.+++.++.+|++.|++.+++.+++.++.+...+
T Consensus       421 ~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence            999999999999999999999998889999998877776666655544333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01272 gluP glucose/galactose transporter

Probab=99.18  E-value=1.9e-09  Score=111.75  Aligned_cols=161  Identities=11%  Similarity=-0.003  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      ..++..+..++...+-.++..|++.|+.+.  +|++.++++...+.+..+..++.+++++++||+ |+||++.++..+.+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            455555555554445567788999999854  799999999999999999999999999999998 99999988887777


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++.++....                            .+.. ...+.++.|++.+...|...+...+.+|++..     +
T Consensus       220 ~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~  265 (310)
T TIGR01272       220 LLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTS-----Q  265 (310)
T ss_pred             HHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----h
Confidence            666444432                            1111 22355588999999999999999998886541     4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~  268 (634)
                      +++  +. ....+|+.+.|.+.|++.+..|.+.+|++..++
T Consensus       266 asa--i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       266 GSG--IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             hHH--HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            443  43 456689999999999999988988888765544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.16  E-value=9.4e-09  Score=111.42  Aligned_cols=161  Identities=14%  Similarity=0.041  Sum_probs=117.2

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc--cc--hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 006712           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (634)
Q Consensus        92 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~--~G--Rr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (634)
                      ...|+++++|+++++.....+...+... .-++.|.++|.+  +|  ||+-++++.++..++...+++...   .     
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~-----   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S-----   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c-----
Confidence            4567899999999998887776666555 457789999986  35  555666677666555555544311   0     


Q ss_pred             cccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 006712          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (634)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~  247 (634)
                                      ..+.....+..++..+|....-.+.-++..|....+...    |+...++.+....+|..++..
T Consensus        83 ----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~  142 (433)
T PF03092_consen   83 ----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSL  142 (433)
T ss_pred             ----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHH
Confidence                            023344555667788888888899999999988655432    888889999999999999999


Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       248 i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                      ++|++.+..+++..|.+..++..+..+..+...+
T Consensus       143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  143 LSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998887766555554444444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.15  E-value=1.2e-09  Score=120.20  Aligned_cols=175  Identities=11%  Similarity=0.038  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhH-----HHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI  145 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~-----~i~~~~~~  145 (634)
                      +|.+.+..++.....+.+..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+ |||+     ........
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            34444444444555566777889999999999999999999999999999999999999998 8762     22211111


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ...+...+.+...                          .+....++..++.+++.+...+...++..+..| +.     
T Consensus       333 ~l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-----  380 (476)
T PLN00028        333 TLGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS-----  380 (476)
T ss_pred             HHHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence            1111111111100                          233444444556666655555566666666654 45     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                       |+...++.+.+.++|+.++|.+.+ .....+|..+|++.+++.+++.++.++.+
T Consensus       381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence             889999887777778777776543 22344699999988877777776666554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.14  E-value=1.2e-09  Score=112.81  Aligned_cols=182  Identities=14%  Similarity=-0.005  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ..|...+..+...-++-++..+++.|++++++.++.+++.....+.+...+..+++|+||||+ |.+|+.++..+..+++
T Consensus       219 ~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~~  297 (417)
T COG2223         219 DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMALA  297 (417)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHHH
Confidence            478888888888888889999999999999999999999999999999999999999999998 9999888888887777


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      ..+..+...  ....                   ..+...+++..+.+++..|.-.+.+..++...||++       -+.
T Consensus       298 ~~~l~~~~~--~~~~-------------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~  349 (417)
T COG2223         298 AALLSLFLT--GFGH-------------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGA  349 (417)
T ss_pred             HHHHHcccc--cccc-------------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhH
Confidence            776665411  0000                   023444444444555555555556666777777764       588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      ..++.....++|+..-|...+...+..| +...|++...+.+++.+......
T Consensus       350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999888887 88999988887777766554433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.14  E-value=3.9e-09  Score=113.98  Aligned_cols=345  Identities=13%  Similarity=0.095  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHHHhCCChh-HHHHHHHHH----HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006712           88 LSVNMVTFMFYVMHKSFA-DSSNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (634)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~-~~~~~~~~~----~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (634)
                      ...+...+.....+.+.. ..+......    .+...+..++-|.++||+ |||..+.+..+...+..+...+.      
T Consensus        40 ~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------  112 (463)
T KOG2816|consen   40 VMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------  112 (463)
T ss_pred             chhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH------
Confidence            335566666655554332 233333333    567788899999999998 99999999988887776666653      


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhh--hchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHH
Q 006712          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGA--AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (634)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~--g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l  240 (634)
                                             . +++++   +.++..  +.......++++|....++      |...+++.+.+...
T Consensus       113 -----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~  159 (463)
T KOG2816|consen  113 -----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGA  159 (463)
T ss_pred             -----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHH
Confidence                                   2 33333   334333  3456788889999999998      99999999999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-cHHHHHHHHHHHHhhhcccccccccccc
Q 006712          241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS-PLTRVAQVLVAAFRKRHAAFSSSELIGL  319 (634)
Q Consensus       241 g~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~a~~~~~~~~p~~~~~~l  319 (634)
                      +..++|.+++++.+..|....|++..+..++..+-.....++...++.... +.              +...|.+     
T Consensus       160 ~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~--------------~~~~~~~-----  220 (463)
T KOG2816|consen  160 GLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL--------------RELTPGS-----  220 (463)
T ss_pred             HHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc--------------cccCCCc-----
Confidence            999999999999999999999999988877777665555554332222110 00              0000000     


Q ss_pred             cccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHH
Q 006712          320 YEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLS  399 (634)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~  399 (634)
                                          ..++..            ..+++..+.  .+..|..+.+...     .+...........
T Consensus       221 --------------------~~~~~~------------~~~~~~~~~--~~~~r~~l~l~l~-----~~~~~~~~~~~~~  261 (463)
T KOG2816|consen  221 --------------------LDSSHV------------ADAFQSLTK--VGPDRLLLLLLLV-----AFLSSLPEAGGAS  261 (463)
T ss_pred             --------------------ccchhh------------hhhhhhhcc--cCCCccchHHHHH-----HHHHHHHHhcCce
Confidence                                000000            000000011  0111111111111     1111000000000


Q ss_pred             HHHHhhcccCCCCccc-cCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006712          400 VQQAYTMNTHMGKLKL-PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFER  478 (634)
Q Consensus       400 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~  478 (634)
                      -.........+ +|+. ..+.+.........+...+..    ++..+..      .....+.+|++.-.+.++++++...
T Consensus       262 ~~~~~yl~~~f-~w~~~~~s~~~~~~~~~~~i~~l~~~----~~l~~~l------~~~~~i~lGl~~~~~~~~~~af~~~  330 (463)
T KOG2816|consen  262 DVLLLYLKAKF-GWNKKEFSDLLSLVSILGIISQLLLL----PLLSSIL------GEKRLISLGLLSEFLQLLLFAFATE  330 (463)
T ss_pred             eEEEEEEeeec-CcCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------hhhhHhhHHHHHHHHHHHHHHHhcc
Confidence            00000011111 1111 111122222222222222222    2222211      1112588899999999888887641


Q ss_pred             HHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 006712          479 YRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN  558 (634)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~  558 (634)
                                              .|.............+..|...+++.....++.+|...++......+.+.+++.+.
T Consensus       331 ------------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~  386 (463)
T KOG2816|consen  331 ------------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY  386 (463)
T ss_pred             ------------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence                                    23333344556677788899999999999999999999999999999999999999


Q ss_pred             HHhhccc
Q 006712          559 SIIKSVT  565 (634)
Q Consensus       559 ~~v~~~~  565 (634)
                      +.+...+
T Consensus       387 ~~i~~~t  393 (463)
T KOG2816|consen  387 GNIFALT  393 (463)
T ss_pred             HHHHHHH
Confidence            9876544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.14  E-value=2e-09  Score=104.67  Aligned_cols=178  Identities=17%  Similarity=0.119  Sum_probs=138.2

Q ss_pred             ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 006712           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (634)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~  140 (634)
                      ..........+|.+..+.++...+.+-..+.-+.+.++.+|+|+..++.+.+.........+++.|.++|++ ||+-..+
T Consensus       256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv  334 (459)
T KOG4686|consen  256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV  334 (459)
T ss_pred             cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence            444445555688888888888888877778889999999999999999999999999999999999999998 9997766


Q ss_pred             HHHHH-HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCC
Q 006712          141 IFTTI-YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (634)
Q Consensus       141 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (634)
                      .+..+ ..++..+++++                              .+.-+++..++|+..........+.++-+.|++
T Consensus       335 ~~a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~  384 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE  384 (459)
T ss_pred             HHHHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence            65544 45566666654                              223355666778877776666777788888888


Q ss_pred             CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHH
Q 006712          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNML  275 (634)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g---w~~~f~~~~~~~~i~~~~  275 (634)
                      +      .|++++..+...|+|-++.|+++|.+.+.-|   |--.|.+....+.+..+.
T Consensus       385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svg  437 (459)
T KOG4686|consen  385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVG  437 (459)
T ss_pred             H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence            8      9999999999999999999999999987654   555565555444444333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.14  E-value=1.9e-09  Score=113.65  Aligned_cols=152  Identities=9%  Similarity=0.004  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ++......++....+++.. .+.+.|.++.+|.+..+.+.....+.++..++.++.|+++||+ |||+.+..+.++..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence            4445555555566665565 6677777777999999999999999999999999999999998 9999988887666666


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      .....+.                            . +.+.+++..++.|++.+...+...+++.|.+|+++      |+
T Consensus       291 ~~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  336 (365)
T TIGR00900       291 ILVVGLT----------------------------PPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LG  336 (365)
T ss_pred             HHHHHhh----------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HH
Confidence            5555543                            2 35667778889999999999999999999999988      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~g  257 (634)
                      +.+++++...++|..++|.++|++.+..|
T Consensus       337 ~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       337 RVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999987654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.14  E-value=3.6e-09  Score=114.75  Aligned_cols=147  Identities=15%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 006712           84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (634)
Q Consensus        84 ~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~  163 (634)
                      ..+.+..+++.|+.+ .|.+..+.+...+.+.++..++.+++|+++||+ |||+.+..+.++..++..++....      
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~------  317 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP------  317 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc------
Confidence            344566778888876 699999999999999999999999999999998 999999888876655544433220      


Q ss_pred             CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q 006712          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (634)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~  243 (634)
                       .                   .+...+.+..+..+++..+..+..+.++.|.+|++.      |++++++.+....+|+.
T Consensus       318 -~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~  371 (426)
T PRK12307        318 -Q-------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT  371 (426)
T ss_pred             -c-------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence             0                   122222222222333334445667788899999998      99999999988899999


Q ss_pred             HHHHHHHHHhhccchHHHHHH
Q 006712          244 VAFTLVVYIQMEHGWGSAFGA  264 (634)
Q Consensus       244 ~~p~i~~~l~~~~gw~~~f~~  264 (634)
                      ++|.+.+++.+..|+....++
T Consensus       372 ~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        372 FNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHHHHHHHHcccHHHHHHH
Confidence            999999999998886654333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.12  E-value=1.3e-09  Score=117.83  Aligned_cols=164  Identities=8%  Similarity=-0.074  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL  147 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~-i~~~~~~~~  147 (634)
                      .++...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +....++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            46677777778888889999999999977 3477888999999999999999999999999998 87764 333333333


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++. .+....                           .+....+.+..+.++|.....+.......|.+|+++      |
T Consensus       322 ~~~-~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~  367 (412)
T TIGR02332       322 AGW-LLASAT---------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R  367 (412)
T ss_pred             HHH-HHHHhc---------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence            322 111110                           111112222223333333333444455577888888      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA  268 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~  268 (634)
                      ++++++.+...++|..++|.+.+.+.+..| |++.|++.+++
T Consensus       368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999999998775 99988876653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.12  E-value=6.9e-09  Score=110.95  Aligned_cols=165  Identities=7%  Similarity=-0.102  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++......++....+.....+++.|+. +.|.+..+.+...+...++..+..++.|++.||+ |+|+.+.++.++..++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence            455555555555666667777888885 5899999999999988888888999999999998 99999999988887776


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      +++...                            .+.+.+++..++.|++.+...+....+..+. ++++      +++.
T Consensus       285 ~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~  329 (382)
T PRK11128        285 GLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRL  329 (382)
T ss_pred             HHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHH
Confidence            666554                            5677788888999999998888888888776 5555      6777


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Q 006712          231 FNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (634)
Q Consensus       231 ~~~~~-~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~  273 (634)
                      .+++. ....+|..+||.++|++.+..|+. .|+..+++.++++
T Consensus       330 ~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~  372 (382)
T PRK11128        330 QALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence            88765 456788899999999999988874 5555555444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.12  E-value=9.9e-09  Score=110.64  Aligned_cols=171  Identities=11%  Similarity=-0.110  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++...+..++.....+......|.|+.+++|++..+.++......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44444444444455555666678888889999999999888878888889999999999998 99999999988877777


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .+......   ..+                    .+...++++.++.|+|.+...+......... ++++      |++.
T Consensus       296 ~~~~~~~~---~~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~  345 (406)
T PRK15402        296 LLAALATV---ISS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTV  345 (406)
T ss_pred             HHHHHHHH---ccc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHH
Confidence            76665311   000                    2455667778889999888776665555433 3355      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~  272 (634)
                      .+.++....+|..+|+.+.+++.+..++....+...+..++.
T Consensus       346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            999999999999999999999988777665555544443333

>PRK10504 putative transporter; Provisional

Probab=99.11  E-value=5.8e-09  Score=114.78  Aligned_cols=156  Identities=10%  Similarity=-0.026  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      +...+...++..+++.......+.|++..+|.+..++++....+.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            44555666666666655556677888878999999999999888888888889999999998 99999998888777766


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .++.+...      .                   .+...+.+..++.|++.+...+....+..+.+|++.      |+.+
T Consensus       342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  390 (471)
T PRK10504        342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG  390 (471)
T ss_pred             HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence            55554210      0                   223344455677888888888888999999999988      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw  258 (634)
                      +++++....+|..+|+.+++.+.+..|+
T Consensus       391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999887665544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.09  E-value=6.1e-09  Score=114.42  Aligned_cols=179  Identities=17%  Similarity=0.079  Sum_probs=123.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHH-------
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-------  139 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i-------  139 (634)
                      +++.++...+..++....++.+..++|.|+.+.+|++..+.++..+...++..++.+++|+++||+ ++|+..       
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~  337 (465)
T TIGR00894       259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK  337 (465)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence            345678888888999999999999999999999999999999999999999999999999999997 644211       


Q ss_pred             -HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC
Q 006712          140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (634)
Q Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (634)
                       ..+......+..++.....     .                    .+....++...+.+.+.++..+.......|..|.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  392 (465)
T TIGR00894       338 IFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence             1111111111111111100     0                    1223333444444555555555555555566654


Q ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHHH
Q 006712          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~---gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                       .      ++...++.+...++|+.++|.+.+++.+..   +|...|++.++..+++.+....
T Consensus       393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence             5      899999999999999999999999987643   4888888877776666555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.09  E-value=5.5e-09  Score=112.25  Aligned_cols=169  Identities=12%  Similarity=0.081  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      +..++..+.....+.....+.+.|+.+.+   +.+....+...+...+...++.++.|++.||+ |||+.+.++.++..+
T Consensus       218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l  296 (396)
T TIGR00882       218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHH
Confidence            33334444444444445556788887765   45566778888888888888999999999998 999999999888877


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +..+...+                            .+.+.+++..++.|++..........+..+.++++.      ++
T Consensus       297 ~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a  342 (396)
T TIGR00882       297 RIIGSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA  342 (396)
T ss_pred             HHHHHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence            76665543                            456667778888998887776677777888888877      77


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 006712          229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       229 ~~~~~-~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (634)
                      +..+. ++....+|..++|.++|++.+..||+..|.+.+++.++..++
T Consensus       343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            77766 667899999999999999999999999999877766555444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.09  E-value=1.1e-08  Score=109.42  Aligned_cols=170  Identities=11%  Similarity=-0.001  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~  151 (634)
                      +......++...+.+....+++.|+.+.+|++..+.++..+.+.++..++.++.|+++||+ |||+.+.++..+..++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~  280 (382)
T PRK10091        202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence            3443444444455555566778888888999999999999999999999999999999998 999999988887777765


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHH-HhhccCCCCCcchhhhhhhH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~ad~~~~~~~~~~~~r~~~  230 (634)
                      ++....                           .+.+...+..++.+++.++..+.... ...+..+++.      ++..
T Consensus       281 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~  327 (382)
T PRK10091        281 MLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA  327 (382)
T ss_pred             HHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence            544321                           22334444445555655444443333 3334334333      4443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~-~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                        ..+...++|..+||.++|++.+. .+|++.+.+.++..++.+....
T Consensus       328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence              33556789999999999998885 6799888887766555544433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.07  E-value=1.2e-08  Score=109.26  Aligned_cols=174  Identities=7%  Similarity=-0.085  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ++......++...+......+.+.|+.+ .|++.++.+++...... ...++.+++|++.||+ |+|+++.++.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            3444444455556666666777888875 79999999998888764 5667789999999998 9999998877665333


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC-CCcchhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD  228 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~  228 (634)
                      ......... ....                     .+...++....+.+++.+...+...+...+..++ +.      ++
T Consensus       288 ~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g  339 (390)
T TIGR02718       288 ALLWFAQAA-FWLA---------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AG  339 (390)
T ss_pred             HHHHHHHHH-cccC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hH
Confidence            222221100 0000                     1223334444555666777777777777777765 56      89


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~  274 (634)
                      +.+++++...++|..++|.++|++.+..|++..|++.+++.+++.+
T Consensus       340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999989999888877765555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00895 2A0115 benzoate transport

Probab=99.07  E-value=4.5e-09  Score=112.17  Aligned_cols=149  Identities=14%  Similarity=0.024  Sum_probs=116.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      ++..+...+..++....++.+..+++ ++.+++|.+..+++...+.+.++..++.+++|+++||+ |||+.+....+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  326 (398)
T TIGR00895       249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence            34445555555666677777777777 77778999999999999999999999999999999998 99855444433333


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      +...+....                            .+...+++..++.|++.+...+...+++.|.+|++.      |
T Consensus       327 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  372 (398)
T TIGR00895       327 FAVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R  372 (398)
T ss_pred             HHHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence            222222211                            344566677788999999999999999999999998      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYI  252 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l  252 (634)
                      ++++++++....+|..++|.++|++
T Consensus       373 g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       373 ATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999999999875

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.07  E-value=4.1e-09  Score=116.21  Aligned_cols=155  Identities=12%  Similarity=0.092  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++...+..++..+.+++...++|.|+++.+|.+..++++......++..++.+++|+++||+ |||+.+.++..+..++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVGF  335 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHH
Confidence            45556666777788888888999999999999999999999999999999999999999998 99999999888877776


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .++.+..     .+.                   .+.+.++...++.|+|.+...+.......+.+|+++      |+++
T Consensus       336 ~~~~~~~-----~~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~  385 (485)
T TIGR00711       336 YWRAFTF-----TPD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARG  385 (485)
T ss_pred             HHHhccC-----CCC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHH
Confidence            6655321     111                   344556666788999999888777788888899888      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEH  256 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~  256 (634)
                      .++++...++|+.+|+.+.+.+.++.
T Consensus       386 ~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       386 SSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998887643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.03  E-value=5.4e-09  Score=116.02  Aligned_cols=173  Identities=16%  Similarity=0.094  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhhhccchhHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWT  138 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~------------~~~~~~~~~~~~~l~~G~lsDr~~GRr~~  138 (634)
                      .+.+....+...+.+|++..+.|.+++ +.|++..+++.            ......++..++.+++++++||+ |||++
T Consensus       290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~  367 (502)
T TIGR00887       290 LLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPI  367 (502)
T ss_pred             HHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhH
Confidence            333334445556778888888888875 67876543221            12233445556788999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC
Q 006712          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (634)
Q Consensus       139 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (634)
                      ++++.++..++..++.+....   .+                    .+ ..+....+...++..+..+....+.+|.+|+
T Consensus       368 l~~~~~~~~~~~~~l~~~~~~---~~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~  423 (502)
T TIGR00887       368 QLMGFFILTVLFFVLGFAYNH---LS--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPT  423 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---cc--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCch
Confidence            988887777666555543110   00                    11 1111111122222333455667788999999


Q ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHH
Q 006712          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~----------~gw~~~f~~~~~~~~i~~~~  275 (634)
                      +.      |++++++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+.
T Consensus       424 ~~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       424 RY------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             hH------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            99      99999999999999999999999988763          23445666665555544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.02  E-value=7.9e-09  Score=106.94  Aligned_cols=174  Identities=13%  Similarity=0.090  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .+..-+...++.+=+..++......|...++|++..+.......-.+..+++++++|+|.||+ |-|+++.++.+++.+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            455666666776667777888889999999999999999999999999999999999999998 9999999999888776


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+...+.                            .....+++.-++.|+..|+.++..-++.+++.|+++      -++
T Consensus       332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~  377 (438)
T COG2270         332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR  377 (438)
T ss_pred             HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence            5555543                            223444555568999999999999999999999999      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (634)
                      +|++|.+..-..+.+||.+.+.+.+.+| -|..+....++..++++++..
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            9999999999999999999998887665 676766655555555555433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.02  E-value=1.9e-08  Score=110.86  Aligned_cols=163  Identities=9%  Similarity=-0.054  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 006712           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (634)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (634)
                      .+..+.+ ++.+++|.+.....+......+...++.+++|+++||+ |||++++.+.++..++.++++.....    +. 
T Consensus       289 ~~~~~~p-~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~----~~-  361 (479)
T PRK10077        289 VVLYYAP-EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYT----QA-  361 (479)
T ss_pred             HHHHHHH-HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhc----Cc-
Confidence            3333334 44467898887777777778888889999999999998 99999999999888887776643110    00 


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhhc-hhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 006712          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (634)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~  245 (634)
                                        .. .....+.++.+++.+. ..|+..+++.|.+|++.      |++++++.+...++|..++
T Consensus       362 ------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~  416 (479)
T PRK10077        362 ------------------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFV  416 (479)
T ss_pred             ------------------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHH
Confidence                              11 1223333444444443 34778899999999988      9999999888888888777


Q ss_pred             HHHHH------HHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          246 FTLVV------YIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       246 p~i~~------~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                      +.+.+      ++.+..+|++.|++.++..+++.+..+...+
T Consensus       417 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             HHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence            55544      4446788888888877665555555444333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.02  E-value=1.2e-08  Score=110.99  Aligned_cols=160  Identities=16%  Similarity=0.062  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .++..++..++..++++......+.|++..++ +..+.++......++..++.++.|+++||+ |||+++.++.++..++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  300 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG  300 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            35556666666667766655555555555555 566677777888899999999999999998 9999999998888777


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcch-hhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~  228 (634)
                      .+.+.+..                           .+...+++..++.|++.+...+...++++|..+.++.+. ...++
T Consensus       301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  353 (437)
T TIGR00792       301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG  353 (437)
T ss_pred             HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence            66655430                           234556666778899999999999999999876332110 01178


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw  258 (634)
                      ..++++++...+|..+++.+.|++.+..||
T Consensus       354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999998876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.02  E-value=2.8e-08  Score=109.67  Aligned_cols=169  Identities=10%  Similarity=0.045  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 006712           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~  153 (634)
                      +++..++..+....+...+|.+..+.+|.+....|++.+.+.+|..++.++.+++.+|+ ++++.+..+.+++.++.+.+
T Consensus       223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l  301 (524)
T PF05977_consen  223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL  301 (524)
T ss_pred             HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence            33444444444445556678888999999999999999999999999999999999997 99999999988888877777


Q ss_pred             HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHH
Q 006712          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (634)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~  233 (634)
                      +++                            .+.+...+..++.|++.........+.+-+..|++.      ||+.+++
T Consensus       302 al~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si  347 (524)
T PF05977_consen  302 ALS----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI  347 (524)
T ss_pred             hcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence            775                            567777788889999999888888899999999999      9999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006712          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       234 ~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      ++.....+..+|.++.|++.+..|-+..+.+.++..++..++..
T Consensus       348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888877766555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.02  E-value=9e-09  Score=114.05  Aligned_cols=153  Identities=13%  Similarity=0.052  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .+....+..++..+++++...+++.|+++.+|.|+.+++.....+.++..++.+++|++.||+ |||+.+..+.++..++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~  338 (495)
T PRK14995        260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS  338 (495)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            355556666777777888888899999999999999999999999999999999999999998 9999998888887777


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+++.....      .                   .+.+..++..++.|+|.|...+.......+..|+++      ++.
T Consensus       339 ~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~  387 (495)
T PRK14995        339 FYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA  387 (495)
T ss_pred             HHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence            665544210      0                   233445667788999999988888888889999988      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                      +.++++...++|..+|+.+.+.+.+
T Consensus       388 ~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        388 AGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>PRK10133 L-fucose transporter; Provisional

Probab=99.01  E-value=2.2e-08  Score=108.98  Aligned_cols=164  Identities=10%  Similarity=0.022  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 006712           74 IFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (634)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~  152 (634)
                      ..+..++.....++...+++.|+ ++.+|+++.++++....+.++..++.+++|+++||+ |||+++..+.++..++..+
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~  341 (438)
T PRK10133        263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence            33444555566666777888886 557899999999999999999999999999999998 9999998887776655544


Q ss_pred             HHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHH
Q 006712          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (634)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~  232 (634)
                      ..+.                            .+. ..+....+.|++.+...|+..+...+.++++.       +.+.+
T Consensus       342 ~~~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~  385 (438)
T PRK10133        342 SAFA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS  385 (438)
T ss_pred             HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence            4332                            121 22455678999999999999999999987643       33333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHH
Q 006712          233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNML  275 (634)
Q Consensus       233 ~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~  275 (634)
                      +... ..+|+.++|.+.|++.+..| -+..|++..++.+..+..
T Consensus       386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            3332 33678888889999998887 788888766655444433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.00  E-value=4.4e-08  Score=104.32  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~  151 (634)
                      +...+...+....++....+.+.|+.+++|.++.+.+.+...+.++..++.+++|+++||+ |||+.+..+.++..++..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~  287 (385)
T TIGR00710       209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAV  287 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence            3333444445556666777788899889999999999999999999999999999999998 999999988887777766


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      ++......    +.                   .....+++..++.|++.+...+.......|.+| ++      |++..
T Consensus       288 ~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~  337 (385)
T TIGR00710       288 LLEITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTAS  337 (385)
T ss_pred             HHHHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHH
Confidence            66553210    00                   123444555677889989888888888888886 45      88899


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHH
Q 006712          232 NFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGAL  265 (634)
Q Consensus       232 ~~~~~~~~l-g~~~~p~i~~~l~~~~gw~~~f~~~  265 (634)
                      ++++..... |+..+|+ .+.+.+..+|...+...
T Consensus       338 ~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~  371 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSCL  371 (385)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhccccChHHHHHHHH
Confidence            987776544 5555554 45555555555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.99  E-value=7e-08  Score=103.66  Aligned_cols=164  Identities=10%  Similarity=-0.010  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++......++...+.++...+++.++.+++|++..+.+.....+.++..++.++.|++.||. +|+ .++.+.++..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence            44444444555555666666665555567899999999999999999999999999999995 554 4344434333332


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .++....                           .+.+.+.+..++.|++.+...+...+++.+..|+ +      +++.
T Consensus       296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~  341 (394)
T PRK10213        296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKA  341 (394)
T ss_pred             HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHH
Confidence            2222210                           3456666777889999999999888888888874 3      4556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~  270 (634)
                      .+++....++|..+||.++|++.+..|++..++..++..+
T Consensus       342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            6666677789999999999999998898888877665443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.99  E-value=6.3e-08  Score=104.27  Aligned_cols=152  Identities=14%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 006712           91 NMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (634)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (634)
                      +.+.|+.+++|++.++.+++..... ++..++.+++|+++||+ |||+.+.++.++..+..+.+.+....    +     
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~-----  300 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P-----  300 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence            4455777889999999999886654 46788999999999998 99998887777665554433321110    0     


Q ss_pred             cccccccCCCCCccchhHHHHHHHH----HHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 006712          170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (634)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~  245 (634)
                                     .+.+.+++..    +..|++.+...+....++.+.+|.++      +    +++....++|..++
T Consensus       301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~l~~~~~  355 (402)
T PRK11902        301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLSALASVGRVYV  355 (402)
T ss_pred             ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHHHHHHHHHHHH
Confidence                           1234444443    34556666667777777777776554      4    34444445666666


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006712          246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       246 p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      +.++|++.+..||+..|.+.+++.++++++..
T Consensus       356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            66899999999999999988877766655543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.99  E-value=5.1e-11  Score=131.64  Aligned_cols=201  Identities=15%  Similarity=0.109  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~  155 (634)
                      +..+.. ...++......+-+.+.|+++.+++|++.+.+-++..+..++..++++|- -|-|.+-++.++..+|.+++++
T Consensus        10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence            333444 55556666667788999999999999999999999999999999999985 6778888999999999999887


Q ss_pred             hhhhc-ccCCC------------CCccc-----ccccccCCC----CCccchhHHHHHHHHHHHHHhhhchhhhHHHHhh
Q 006712          156 CATMK-VFMPN------------QDNCD-----RISQLLGSC----EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA  213 (634)
Q Consensus       156 ~~~~~-~~~~~------------~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a  213 (634)
                      ..+.. ...+.            .+.|.     +...+...|    +.....-...++++.++.|+|....++...+|+=
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            53321 11000            11120     000001111    1222223467788999999999999999999999


Q ss_pred             ccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---------------------ccc-hHHHHHHHHHHHHH
Q 006712          214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EHG-WGSAFGALAIAMGI  271 (634)
Q Consensus       214 d~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~---------------------~~g-w~~~f~~~~~~~~i  271 (634)
                      |-.+++.      -...+++++.+..+|+++|.++++.+..                     +.| ||.+|.+.+.+.++
T Consensus       168 Dnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l  241 (539)
T PF03137_consen  168 DNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL  241 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999988      7888999999999999999988875431                     123 88888888877666


Q ss_pred             HHHHHHHhccccc
Q 006712          272 SNMLFFIGTPLYR  284 (634)
Q Consensus       272 ~~~~~~~~~~~~~  284 (634)
                      ..+.+++..|+.+
T Consensus       242 ~aipl~~FPk~lp  254 (539)
T PF03137_consen  242 SAIPLFFFPKKLP  254 (539)
T ss_dssp             -------------
T ss_pred             HHHHHHcCCccCC
Confidence            6666665555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.98  E-value=4.2e-08  Score=105.91  Aligned_cols=183  Identities=13%  Similarity=-0.020  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .|...+..++...+|.++..++|.|+++.+  +.........+..+...+..|++|+||||+ |++|++.++.++..++.
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHHH
Confidence            677777777777777777778999988865  333333344556778888999999999998 99999999988777766


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcc--------
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD--------  222 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~--------  222 (634)
                      .++.+..  +..                    ...+...+.+..+.+.++.|.-.+.+..++.+.||+++.+        
T Consensus       331 ~~~~l~l--p~~--------------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~  388 (462)
T PRK15034        331 ALLFLTL--PGT--------------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGS  388 (462)
T ss_pred             HHHHHHh--ccc--------------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccc
Confidence            5443321  100                    0134566666655555666666677777777777741100        


Q ss_pred             -------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 006712          223 -------YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       223 -------~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~  278 (634)
                             .++.-+...++......+|+.+-|.+.+...+..| +...|+...+..++.+++.+.
T Consensus       389 ~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        389 DEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence                   11125667777778888999999977777665544 778888777766655555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.98  E-value=2.1e-08  Score=122.72  Aligned_cols=163  Identities=10%  Similarity=-0.013  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ++..++..++..+..+.+..+++.|+.+.+|++.. +.+++.+.+.++..++.+++|+++||+ ++++++.++.++..++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence            34444444444555556777889999999999999 999999999999999999999999998 9999888888877777


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+++.+.                            .+.+.++++.++.|++.++..+...+++.+.+|++.      |++
T Consensus       313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~  358 (1146)
T PRK08633        313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK  358 (1146)
T ss_pred             HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence            6666654                            455667777788999999988999999999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~-~~gw~~~f~~~~~~  268 (634)
                      +++++++..++|..+++.+++.+.. ..++...|++.+.+
T Consensus       359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999999888877776644 23455555554433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.97  E-value=1.3e-06  Score=89.62  Aligned_cols=156  Identities=17%  Similarity=0.125  Sum_probs=108.6

Q ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccc
Q 006712           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL  175 (634)
Q Consensus        96 l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (634)
                      +-+++|++..+.+.+.........+..++.|.++||+ |||+..++.++++.+..+.--.                    
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~--------------------  118 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS--------------------  118 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc--------------------
Confidence            3467999999999999999999999999999999998 9999999999998877643322                    


Q ss_pred             cCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 006712          176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~-~~~~lg~~~~p~i~~~l~~  254 (634)
                               .+...++++|++-|++......+-.+.+.....++.-+ ....+.-++... +...+-+..+.+++.++.+
T Consensus       119 ---------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~  188 (354)
T PF05631_consen  119 ---------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLAD  188 (354)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence                     57899999999999999999888877764333332211 011333333222 2222334444455556666


Q ss_pred             ccch--HHHHHHHHHHHHHHHHHHHHhccc
Q 006712          255 EHGW--GSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       255 ~~gw--~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                      ..+.  ..+|..+.++.+++.++.....++
T Consensus       189 ~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  189 WFGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            5543  678888887777776665544443

>PRK10054 putative transporter; Provisional

Probab=98.96  E-value=2.1e-08  Score=107.70  Aligned_cols=172  Identities=12%  Similarity=-0.006  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      ++...+..++..+.+.....+.+.|+...  .+.+....+.....+.+......++.|++.||+ |||+.+..+.++..+
T Consensus       208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~  286 (395)
T PRK10054        208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI  286 (395)
T ss_pred             ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence            33344445555555544555666776543  455566677777777777777778889999998 999999999888777


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +...+.+..                           .+.+.+.++.++.|+|.+...|...+++.+..|++.      |+
T Consensus       287 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~  333 (395)
T PRK10054        287 GLVGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KA  333 (395)
T ss_pred             HHHHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ce
Confidence            776665431                           245556667789999998888888899999999888      88


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      +.++... ...+|..+||.++|++.+..|....|++.+....+++++.+
T Consensus       334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            8887654 56689999999999999999988888776665555555444

>TIGR00896 CynX cyanate transporter

Probab=98.95  E-value=3.6e-08  Score=104.17  Aligned_cols=152  Identities=14%  Similarity=0.045  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+......++....++++..++|.|+++ .|.+..+++...+.+.++..++.++.|+++||+-+||+++.++.++..++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  277 (355)
T TIGR00896       199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL  277 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            4555555566677788888899999875 799999999999999999999999999999997245667777777777776


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      ..+.+.                            .+.... ...++.|++.|...+...+...+..++++.     ++..
T Consensus       278 ~~~~~~----------------------------~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~  323 (355)
T TIGR00896       278 CGLLFA----------------------------PMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAAL  323 (355)
T ss_pred             HHHHHh----------------------------hhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHH
Confidence            655553                            111111 134578999999888887777766654331     6788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~g  257 (634)
                      +++.+...++|..++|.+.|++.+..|
T Consensus       324 ~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       324 SAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888888999999999999988776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.95  E-value=4e-08  Score=105.79  Aligned_cols=153  Identities=11%  Similarity=0.025  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 006712           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (634)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (634)
                      ....++|.|+++..+ ++.+.++..+...++...+....+++.||.++.++.+..+.++..++..++...          
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------  294 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------  294 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence            345567888877655 667788887777666655554455555543376777777777777776666554          


Q ss_pred             CcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 006712          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (634)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p  246 (634)
                                        .+...+++...+.+++.+...|...+++.|..|+++      |++.+++++...++|..+||
T Consensus       295 ------------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~  350 (400)
T PRK11646        295 ------------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGY  350 (400)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcc
Confidence                              345556666677888888888899999999999998      99999999999999999999


Q ss_pred             HHHHHHhhcc---c-hHHHHHHHHHHHHHHHH
Q 006712          247 TLVVYIQMEH---G-WGSAFGALAIAMGISNM  274 (634)
Q Consensus       247 ~i~~~l~~~~---g-w~~~f~~~~~~~~i~~~  274 (634)
                      .++|++.+..   + ....+++..+..++..+
T Consensus       351 ~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (400)
T PRK11646        351 IGGGWLFDLGKALNQPELPWMMLGIIGLITLL  382 (400)
T ss_pred             cchHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence            9999998764   2 24455444444444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.88  E-value=1.5e-07  Score=100.05  Aligned_cols=165  Identities=10%  Similarity=-0.034  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchh---HHHHH-HHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTTI  145 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr---~~i~~-~~~~  145 (634)
                      .++.+....++....+|++..|+|.|+.+ .|++.. .+....+..+...   +..++++||. .||   +.... ..++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~~  266 (368)
T TIGR00903       193 DLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAALL  266 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHHH
Confidence            46778888889999999999999999964 678765 4544444444443   4458888886 543   33222 3322


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..+........                            .+....++...+.+++.....+...++.+|.+|++.     
T Consensus       267 ~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-----  313 (368)
T TIGR00903       267 IAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL-----  313 (368)
T ss_pred             HHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh-----
Confidence            22222222221                            122333444456667777777888899999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~  276 (634)
                       |+++.++.+...++|+..+|.+.+.+..  +-...|.+.++..+++.+..
T Consensus       314 -rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       314 -HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             -cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999998887763  55566666655555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00898 2A0119 cation transport protein

Probab=98.87  E-value=4.3e-08  Score=108.90  Aligned_cols=131  Identities=14%  Similarity=0.047  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHH
Q 006712          112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (634)
Q Consensus       112 ~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (634)
                      ....+...++.+++++++||+ |||+++.++.++..++.+++.+...                          ......+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~  414 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRT  414 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHH
Confidence            344566677889999999998 9999999998877777666555310                          1123344


Q ss_pred             HHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 006712          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI  271 (634)
Q Consensus       192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i  271 (634)
                      +..++.+++.+...+....+.+|.+|++.      |++++++.+....+|+.++|.+.+ +. ..++...+++.++..++
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~  486 (505)
T TIGR00898       415 ALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALL  486 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHH
Confidence            44456667777778888999999999998      999999999999999999999888 43 34566666666655555


Q ss_pred             HHHHHH
Q 006712          272 SNMLFF  277 (634)
Q Consensus       272 ~~~~~~  277 (634)
                      +.++.+
T Consensus       487 ~~~~~~  492 (505)
T TIGR00898       487 AGILTL  492 (505)
T ss_pred             HHHHHH
Confidence            544443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.85  E-value=7.2e-08  Score=117.87  Aligned_cols=183  Identities=6%  Similarity=-0.168  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++...+..++..+.++++..++|.|+.+.+|.+..+++++.+.+.++..++.++.|+++|+. ++++.+.++.++..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  305 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLFG  305 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHHH
Confidence            55566666666677777888999999999999999999999999999999999999999987 76666666655554444


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      +.+.+.... ...+..+.+.-      .+=. ...+.+.++++.++.|++.+...+...+++.+.+|++.      |++.
T Consensus       306 ~~l~~~~~~-~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v  371 (1140)
T PRK06814        306 LDLAFASSS-VPAEPAQLKSI------LVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARV  371 (1140)
T ss_pred             HHHHhcccc-cccccccccch------hhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceee
Confidence            433331000 00000000000      0000 00234566777888999999999999999999999999      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~-~~gw~~~f~~~~~~  268 (634)
                      ++.++...++|..+++++.+.+.+ ..++...|++.+++
T Consensus       372 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        372 IAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999999988874 34566665554443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.85  E-value=8.8e-08  Score=101.22  Aligned_cols=145  Identities=10%  Similarity=0.031  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~-~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      .++...+..++..++++....+++.|+.+ +|++.++.+.+.+... ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            35666666677788888888999999987 9999999998888765 56788999999999998 999999888887766


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +..+..+........    +             -+..+.+.++.+.++.+++.+...+...+++.|.+|++.      |+
T Consensus       288 ~~~~~~~~~~~~~~~----~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g  344 (356)
T TIGR00901       288 TNAGFVWLASNGHHD----G-------------ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA  344 (356)
T ss_pred             HHHHHHHHHhcCccc----c-------------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence            655444321000000    0             000134556677788899999999999999999999999      99


Q ss_pred             hHHHHHHHHHH
Q 006712          229 RFFNFFYLSVT  239 (634)
Q Consensus       229 ~~~~~~~~~~~  239 (634)
                      +.+++++...+
T Consensus       345 ~~~g~~~~~~~  355 (356)
T TIGR00901       345 TQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHh
Confidence            99999876654

>PRK09848 glucuronide transporter; Provisional

Probab=98.85  E-value=5.8e-08  Score=106.19  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++.
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~~  308 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCGY  308 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            55555666666677666666667778878888776666555555667778899999999998 99999999998888877


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcch-hhhhhh
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDR  229 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~~  229 (634)
                      +.+.+.       +.                   .+.+.+++..++.|+|.+...+...++.+|..|.++.+. ...++.
T Consensus       309 ~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~  362 (448)
T PRK09848        309 LLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGL  362 (448)
T ss_pred             HHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhH
Confidence            666543       11                   345666677788999999999999999999988653211 111588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw  258 (634)
                      .++.+++...+|.++|+.+.+.+.+..|+
T Consensus       363 ~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        363 TYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88899999999999999998877654443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.84  E-value=1.7e-07  Score=100.99  Aligned_cols=194  Identities=14%  Similarity=0.069  Sum_probs=131.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      +.++..++.+...+...+.......+..+.+-+..|++..++.++.........+..+++.++-||+ |||+.++++..+
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~  344 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL  344 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence            3444566666666666655544444446666778899999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhh-chhhhHHHHhhccCCCCCcchh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      ..+..+++............                   .-....+++.++..++.+ +.-|...-+.+|++|++.    
T Consensus       345 ~~~~~~~~~~~~~l~~~~~~-------------------~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~----  401 (485)
T KOG0569|consen  345 MAVALLLMSIALFLSNSFGS-------------------WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA----  401 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc----
Confidence            88887777765332110000                   011122344433333333 335777888999999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccC
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~  286 (634)
                        |..++++-+....+...+-.+.--.+.+..|- ..|.+..+..++..+..+...|+.+.+
T Consensus       402 --R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  402 --RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence              99999997776666666555555556666664 556555566666666666666665543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.83  E-value=5.4e-08  Score=98.31  Aligned_cols=145  Identities=12%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-----------------VMHKSF--ADSSNAVNNFLGISQASSVLGGFLAD  130 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-----------------~~~~s~--~~~~~~~~~~~~~~~~~~l~~G~lsD  130 (634)
                      ..+....+-|..++.||++.-......+.                 ..+-..  ..--.=..+-.+..+-|.++.|++-|
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence            35666777888899999876542222211                 111111  11111123345566788999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHH
Q 006712          131 AYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS  210 (634)
Q Consensus       131 r~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~  210 (634)
                      |+ |||+++..+.+++.+.++++..+-                       +++ .-..+++.+|+++    .+...+.+.
T Consensus       407 rl-GRKkTMal~l~~f~iflfll~~c~-----------------------~rn-~~tvllf~arafi----sg~fqvaYv  457 (528)
T KOG0253|consen  407 RL-GRKKTMALSLILFGIFLFLLTTCK-----------------------TRN-AYTVLLFTARAFI----SGAFQVAYV  457 (528)
T ss_pred             Hh-cchhHHHHHHHHHHHHHHHHHHhc-----------------------Ccc-hhHHHHHHHHHHH----hchheEEEE
Confidence            97 999999999999998887777641                       111 2224455566544    444566778


Q ss_pred             HhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006712          211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (634)
Q Consensus       211 ~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~  249 (634)
                      |..|.+|+..      |+.+.|.-..+.-+|+.+.|.++
T Consensus       458 YtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  458 YTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             ecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence            9999999999      99999999999999999999888

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.80  E-value=4.4e-07  Score=97.43  Aligned_cols=157  Identities=6%  Similarity=-0.068  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 006712           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (634)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~  162 (634)
                      .........++.|+++.+|.++.+.+.....+.++..++.++.+++.||. ++++++..+..+ .+....+...      
T Consensus       219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------  290 (393)
T PRK11195        219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH------
Confidence            34444555667788888999999999999999999999999999999997 998888777532 2222222222      


Q ss_pred             CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHH
Q 006712          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (634)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~  242 (634)
                                            .+.+...+..++.|++.+...+...+.+.+..|++.     ++++.+++.+...++|.
T Consensus       291 ----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~  343 (393)
T PRK11195        291 ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAM  343 (393)
T ss_pred             ----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHH
Confidence                                  345555666778899988888878888877644432     16899999999999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 006712          243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       243 ~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (634)
                      .++..+.+.+ +..|-++.+++.....++.+.+
T Consensus       344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            9999888865 5677666666655554444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.79  E-value=1.3e-07  Score=103.96  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=146.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIY  146 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~G--Rr~~i~~~~~~~  146 (634)
                      +.++...+...+..++++.-..+++.|.. ..+++..+++.++++..+...++.++.|+++|+. .  ++.+..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            45777888888888999888888898887 8899999999999999999999999999999987 6  334444555555


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .++...+++.                            .++..++..-++.|++.|......+..+.|+...++      
T Consensus       376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------  421 (509)
T KOG2504|consen  376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------  421 (509)
T ss_pred             HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence            5555444444                            566777777789999999999999899999999999      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhc
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      ...++++......++..+||.++|++.+.++ |...|+..++..+++.+..+...
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999988887 99999998888777776655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.79  E-value=3.7e-08  Score=103.29  Aligned_cols=142  Identities=19%  Similarity=0.240  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006712           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (634)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~  151 (634)
                      ......+...+.++....+++.|+.+.+|.+ ..+.+...+...+...++.++.|+++||+ |+|+...+......++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~  288 (352)
T PF07690_consen  210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL  288 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence            3444444555566678888999989999999 78999999999999999999999999998 988888877777666665


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      .+.+....                         .+....++..++.|++.+...+...+++.|.+|+++      |++..
T Consensus       289 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  337 (352)
T PF07690_consen  289 GLLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF  337 (352)
T ss_dssp             HHCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred             HHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            55543210                         244566667788999999999999999999999998      99999


Q ss_pred             HHHHHHHHHHHHHHH
Q 006712          232 NFFYLSVTVGAIVAF  246 (634)
Q Consensus       232 ~~~~~~~~lg~~~~p  246 (634)
                      ++++...++|..+||
T Consensus       338 g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  338 GLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.79  E-value=5.6e-07  Score=91.52  Aligned_cols=168  Identities=15%  Similarity=0.103  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .|.+.+..-+.++.+|.+..|+|.++. +.|+|..++++.++...+......++.-++++|.-.+|+..+..+..+.+|.
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~  288 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL  288 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            677777777888999999999999886 5799999999999999999999999999999987678899999999999998


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      ..+.+..                           .+...+.  .+++|+|.|+..|....++.+..++.+.     -++.
T Consensus       289 ~G~~~~P---------------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~L  334 (395)
T COG2807         289 VGLLLAP---------------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAAL  334 (395)
T ss_pred             HHHHHhh---------------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHH
Confidence            8887751                           1222222  4799999999999999999998776541     3333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN  273 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~  273 (634)
                      -++-+-...+=+++||.+.|++.|..| |....+..+...++..
T Consensus       335 SgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         335 SGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             HHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            444444455667789999999998775 8776665554443333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.78  E-value=3e-07  Score=99.94  Aligned_cols=160  Identities=14%  Similarity=0.102  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ......+..++..++........+.|.+..+|.+ ...+.....+.++..++.++.++++||+ |||+++..+.++..++
T Consensus       226 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  226 PFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAALG  303 (428)
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHHH
Confidence            4666777778888888777777788888888877 5667777888999999999999999998 9999999999999998


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcch-hhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~  228 (634)
                      .++..+...                          .+.+.+++..++.|++.+...+...++++|..+.++.+. +...+
T Consensus       304 ~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g  357 (428)
T PF13347_consen  304 FLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREG  357 (428)
T ss_pred             HHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchH
Confidence            888777621                          367888888899999999999999999999998543221 11257


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~g  257 (634)
                      ..++.+.+...+|.++++.+.+.+.+..|
T Consensus       358 ~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  358 MYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            77888889999999999998887765443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.77  E-value=1.1e-06  Score=93.56  Aligned_cols=147  Identities=10%  Similarity=-0.089  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~  151 (634)
                      +...+..++...+.+....+.+.++.+++|++..+.+.......++..++.+++|+++||+ |||+++.++.++..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~  275 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence            3333444444555556666677788888999999999999999999999999999999998 999999988876544333


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      .+......    +                    .+.+.+.++..+.+.+.+...+.......|..| +.      |++..
T Consensus       276 ~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~  324 (377)
T PRK11102        276 WLVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS  324 (377)
T ss_pred             HHHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence            32221100    0                    233344444444555555556666677778776 55      78888


Q ss_pred             HHHHH-HHHHHHHHHHHHHH
Q 006712          232 NFFYL-SVTVGAIVAFTLVV  250 (634)
Q Consensus       232 ~~~~~-~~~lg~~~~p~i~~  250 (634)
                      ++++. ...+|+.+++++++
T Consensus       325 ~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        325 SLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            87555 34566777765543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.75  E-value=1e-06  Score=94.35  Aligned_cols=69  Identities=13%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 006712           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (634)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~  156 (634)
                      ....+.+.|+.+++|++..+.+.......++..++.++.|+++||+ |||+++.++.++..++.+.+.+.
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444557788888999999999999999999999999999999998 99999999988888877776664

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.75  E-value=1.8e-06  Score=91.87  Aligned_cols=137  Identities=12%  Similarity=0.211  Sum_probs=96.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCC
Q 006712          419 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  498 (634)
Q Consensus       419 ~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (634)
                      ...+.+-..-+++-++..+++.++++-.           .+.+|+.+..+=++.+...+                     
T Consensus       410 v~~a~~~~gEI~~~ffs~klI~kiGHv~-----------v~~lgLa~~~~Rf~~~S~L~---------------------  457 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFKLIEKIGHVN-----------VMYLGLACNVGRFLYYSYLQ---------------------  457 (618)
T ss_pred             ehhhhhccchHHHHHHHHHHHHHhcccc-----------eeeehhhHHHHHHHHHHHhc---------------------
Confidence            3344444444555556666665555442           36677777766666666553                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH-HhHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 006712          499 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL-AGGLGCFAASILNSIIKSVTGNPKKGQPNWLA  577 (634)
Q Consensus       499 ~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~  577 (634)
                        ++|..++.=++.|+..+.+.....+|+...+|++++..+.++... ..++|..+|+++++.+....+           
T Consensus       458 --n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-----------  524 (618)
T KOG3762|consen  458 --NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-----------  524 (618)
T ss_pred             --CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-----------
Confidence              567777878899999999999999999999999999999999884 458888888888887655322           


Q ss_pred             cCCccchhhHHHHHHHHHHHHHHHHHHHhh
Q 006712          578 QNINTGRFDYLYWLLAVLSVINFCAFLYSA  607 (634)
Q Consensus       578 ~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~  607 (634)
                             ....|+..++.+++.++++..+-
T Consensus       525 -------~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  525 -------ARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHHhh
Confidence                   23467777776666655555443

>PRK11043 putative transporter; Provisional

Probab=98.74  E-value=1.7e-06  Score=92.94  Aligned_cols=148  Identities=11%  Similarity=-0.004  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 006712           81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK  160 (634)
Q Consensus        81 ~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~  160 (634)
                      ....++....+.+.|++ ++|++..+.++....+.++..++.++++++.||+ |||+.+....++..++.+.+.+.... 
T Consensus       215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~-  291 (401)
T PRK11043        215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL-  291 (401)
T ss_pred             HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            33445556666777775 5899999999888888888889999999999998 99998776666555554433322110 


Q ss_pred             ccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHH
Q 006712          161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (634)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~l  240 (634)
                         ..                   .+...+++...+.|++.+...+...+...|..| ++      |+++.++++.....
T Consensus       292 ---~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~  342 (401)
T PRK11043        292 ---SH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLG  342 (401)
T ss_pred             ---cc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHH
Confidence               00                   233445555667888888888888888878776 45      89999998887777


Q ss_pred             HHHHHHHHHHHHhhccchHH
Q 006712          241 GAIVAFTLVVYIQMEHGWGS  260 (634)
Q Consensus       241 g~~~~p~i~~~l~~~~gw~~  260 (634)
                      ++.+++.+.+.+.+......
T Consensus       343 ~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        343 LCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHccCCChhHH
Confidence            88888888888876443333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=1.5e-05  Score=85.39  Aligned_cols=80  Identities=20%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHH
Q 006712          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (634)
Q Consensus       111 ~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (634)
                      ..+-.....+..++++.+-|++ |.|..+.++...+....+....                             .|-..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~  105 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL  105 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence            5555666778889999999987 9999999999988877666655                             466888


Q ss_pred             HHHHHHHHHhhhchhhhHHHHhhccCCCCC
Q 006712          191 YTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (634)
Q Consensus       191 ~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~  220 (634)
                      +++-.+.|+|.+..+.-...++.|..+++.
T Consensus       106 yfssallG~Gaallw~GqG~ylt~~st~~t  135 (461)
T KOG3098|consen  106 YFSSALLGFGAALLWTGQGGYLTSNSTRET  135 (461)
T ss_pred             HHHHHHhhhhHHheecccceehhhcCChhh
Confidence            899999999999999999999999998887

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.72  E-value=2.3e-08  Score=104.35  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=122.0

Q ss_pred             cCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccC
Q 006712          416 PVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT  495 (634)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (634)
                      ..+.++....+...++.|+++.+.||+-|+..           +.+|..+-.++++..++..                  
T Consensus        69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-----------~~vG~~iW~~Av~~~~fs~------------------  119 (493)
T KOG1330|consen   69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-----------IAVGIFIWTLAVFASGFSN------------------  119 (493)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHhhcCcceE-----------EeeHHHHHHHHHHHHHHHH------------------
Confidence            34566777777888999999999998877744           8889999988888777663                  


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCc
Q 006712          496 AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW  575 (634)
Q Consensus       496 ~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w  575 (634)
                           ..|.+++.-.+.|+||....|...+++.+.+|...|+++.+++++...+|+.+|......+...++       .|
T Consensus       120 -----~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W  187 (493)
T KOG1330|consen  120 -----HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW  187 (493)
T ss_pred             -----HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce
Confidence                 467777888899999999999999999999999999999999999999999999888877766543       24


Q ss_pred             cccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceecc
Q 006712          576 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS  614 (634)
Q Consensus       576 ~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~  614 (634)
                                ++.|+..+++.++..++..++.++-.++.
T Consensus       188 ----------r~af~~~avl~vi~~~L~~~f~~eP~rga  216 (493)
T KOG1330|consen  188 ----------RWAFRGSAVLGVIVGLLVFLFVREPERGA  216 (493)
T ss_pred             ----------EEEEEeehHHHHHHHHHHHhhccCccccc
Confidence                      56788899999988888877776554433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.69  E-value=1e-06  Score=97.16  Aligned_cols=165  Identities=12%  Similarity=-0.008  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      |.++..++..++..++.+......+.|.+..++ +....+.+.+...++..++.++.++++||+ |||++++++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            556677777777777776666665544443333 555666677767788889999999999998 999999988887666


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcch-hhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHL  227 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r  227 (634)
                      +.+.......    .+.                   .+.+.+++..++.|++.+...+...++++|..+.++.+. +...
T Consensus       309 ~~~~~~~~~~----~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        309 SCGVLLLMGL----AAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             HHHHHHHHhc----cCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence            6555443211    011                   345566666778899999999999999999977432110 0013


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw  258 (634)
                      +..+++..+...+|.++++.+.|++.+..|+
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5577778888999999999999887654443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.68  E-value=9.3e-07  Score=78.93  Aligned_cols=134  Identities=16%  Similarity=0.218  Sum_probs=98.6

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcch
Q 006712          422 VFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS  501 (634)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  501 (634)
                      ....+..++..++.+++.||++||.           .+..+..+..++.+......                       +
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~-----------~~~~~~~~~~~~~~~~~~~~-----------------------~   50 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKP-----------VLLVGLFIFVLSTAMFALSS-----------------------N   50 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhH-----------HHHHHHHHHHHHHHHHHHhc-----------------------c
Confidence            3445666778888888888887763           25566666666655544321                       4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCc
Q 006712          502 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN  581 (634)
Q Consensus       502 ~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~  581 (634)
                      .+.+....++.+++.+...+....++.+..|++.|++++++.+....++..+++.+.+.+.+..        +|      
T Consensus        51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~------  116 (141)
T TIGR00880        51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL--------GW------  116 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc--------ch------
Confidence            4556666788899999999999999999999999999999999999999999999998775422        23      


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhh
Q 006712          582 TGRFDYLYWLLAVLSVINFCAFLYSA  607 (634)
Q Consensus       582 ~~~~~~~f~~~a~~~~v~~~~~~~~~  607 (634)
                          +..|++.+++.++..+..+++.
T Consensus       117 ----~~~~~~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       117 ----RAPFLFLAILALAAFILLAFLL  138 (141)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhhcC
Confidence                4566766666666655555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.67  E-value=3.1e-06  Score=90.69  Aligned_cols=178  Identities=9%  Similarity=0.020  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ++..++..++...+.-....+...|+++.-+.+....+...++..+.-.+.-.+.+++-.|+ |-|++++++.+.+++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33344444555555655667788898765557777778777777888888889999999998 99999999999888876


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .+.+....     |.                  ........++..++|+..|........++.+..|++.      |.++
T Consensus       288 ~l~a~~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~  338 (400)
T PF03825_consen  288 LLYAYFSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATA  338 (400)
T ss_pred             HHHHHhcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHH
Confidence            66665411     00                  0111223344567999999999999999999999999      9999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhhccchH------HHHHHHHHHHHHHHHHHHH
Q 006712          231 FNFFYL-SVTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       231 ~~~~~~-~~~lg~~~~p~i~~~l~~~~gw~------~~f~~~~~~~~i~~~~~~~  278 (634)
                      .+++.. ...+|..+|..++|++.+.+|-+      ..+.+.+...++..+++..
T Consensus       339 Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  339 QGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999877 56899999999999999877643      3444444444444444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.66  E-value=1.4e-06  Score=93.97  Aligned_cols=162  Identities=9%  Similarity=-0.058  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .+...+..++......++.++++.|+.+. .+.+...++...+.+.....++.+++|+++||+ ++|+++.++.++..+.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            33444455555455556778889998653 255555666677777788899999999999998 9999988888777766


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .++..+.                            .+. ....+..+.|++.+.++|...+...+..+++.      +..
T Consensus       313 ~ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~  357 (410)
T TIGR00885       313 CLGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYG  357 (410)
T ss_pred             HHHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhh
Confidence            6666553                            122 23456678889999999999999999998765      322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc------chHHHHHHHHHHHH
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMG  270 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~------gw~~~f~~~~~~~~  270 (634)
                      .. ...++ .+|+++.|.+.|++.|..      +.+..|+++.++.+
T Consensus       358 s~-~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       358 AA-GLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             HH-HHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            22 22223 399999999999999854      47788887766543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09669 putative symporter YagG; Provisional

Probab=98.64  E-value=1.2e-06  Score=95.70  Aligned_cols=160  Identities=11%  Similarity=0.012  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+.+++..++...+...... +..|..+..--+.+..+.......+...++.+++++++||+ |||+.+.++.++..++.
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            33344444444444432223 33444333222334444555566677788889999999998 99999998877655433


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcch-hhhhhh
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDR  229 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~-~~~r~~  229 (634)
                      ....+.       +.                   .+.+.+++..++.|++.+...+...++++|..+.++.+. +...+.
T Consensus       309 ~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~  362 (444)
T PRK09669        309 ALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL  362 (444)
T ss_pred             HHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence            322221       11                   355667777788999999999999999999987443211 111456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw  258 (634)
                      .++.+.+...+|.++|+.++|++.+..|+
T Consensus       363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        363 VFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77888889999999999999988765554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.64  E-value=8.5e-07  Score=96.39  Aligned_cols=182  Identities=16%  Similarity=0.166  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccch----hHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIFTT  144 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GR----r~~i~~~~~  144 (634)
                      ..+|.+.+..+....+++.+..++|.|+.+.+|++..+.|+..++-.+...+..+++|.+|||..-|    +.+..+...
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            3589999999999999999999999999999999999999999999999999999999999997221    112222222


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      +-..+..++.+...   ..+    |.          .. ......+.++..+.|+..++..-+    ..|..|.+     
T Consensus       338 i~~~~~ai~l~~l~---~~~----~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq~-----  390 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLA---FTS----DE----------HR-LLAVILLTIAIGLSGFNISGFYKN----HQDIAPQH-----  390 (466)
T ss_pred             HHHHHHHHHHHeee---ecC----CC----------cc-hHHHHHHHHHHHHcccchhhhHhh----hhhccchH-----
Confidence            21222111111100   111    00          00 011122222222333333332222    22324433     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHHh
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG  279 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~  279 (634)
                        -+..+++.+...++.+.++|.+.+.+..+   ..|+..|++.+++.+++.+.+.+.
T Consensus       391 --a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 --AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence              58889999999999999999999998842   369999999998888777665543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.57  E-value=7e-05  Score=79.00  Aligned_cols=155  Identities=8%  Similarity=-0.011  Sum_probs=107.3

Q ss_pred             HHHHHHHHHH-hCCChhHHH-HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 006712           90 VNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (634)
Q Consensus        90 ~~l~~yl~~~-~~~s~~~~~-~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (634)
                      +++..|++++ .|++..+.. -+.-.+.-......++...++|.. |-|++++++.+..++...++.+.           
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~-----------   91 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG-----------   91 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH-----------
Confidence            5788999987 899998875 333344445556677888899976 99999999988888777776665           


Q ss_pred             cccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 006712          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (634)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~  247 (634)
                                       .+...+-+.-++-|++.+. ..+..+++=-..|+++      =.+..++...+.-+|..++.+
T Consensus        92 -----------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~  147 (412)
T PF01770_consen   92 -----------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSL  147 (412)
T ss_pred             -----------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             5677888888888888766 4455566656666655      445555555566666666666


Q ss_pred             HHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHhc
Q 006712          248 LVVYIQM--EHGWGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       248 i~~~l~~--~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      ++-.+..  ..++....++......+++++.++..
T Consensus       148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6554443  34566777777777767766655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.57  E-value=3e-06  Score=93.32  Aligned_cols=187  Identities=11%  Similarity=0.080  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHH----HHhhhccchhHHH-
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI-  139 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----~~~~~~~~~~~~~~~~l~~G----~lsDr~~GRr~~i-  139 (634)
                      +.++.++...++....+....+.++.|..+..+.+...    .++..+.-.+...+..++..    ++.||-.+.+... 
T Consensus       272 ~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k  351 (475)
T TIGR00924       272 YAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK  351 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence            34455555555666666666777888887765544222    45666655555555555544    4555421333433 


Q ss_pred             -HHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC
Q 006712          140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (634)
Q Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (634)
                       .+|.++..++...+++......  .                 +...+.+++++..++.++|.....|...++.++..|+
T Consensus       352 ~~~G~~l~~~~~~~~~~~~~~~~--~-----------------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~  412 (475)
T TIGR00924       352 FTLGMLFCGASFLTFAASIWFAD--A-----------------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ  412 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcC--C-----------------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence             6778887777777665311100  0                 0115788899999999999999999999999999999


Q ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 006712          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      +.      |++.++++..+..+|..+++.+........+|...|...++.+++..++++...
T Consensus       413 ~~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       413 RL------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            99      999999999999999999998888776666788877776666555555554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.56  E-value=5.6e-07  Score=95.21  Aligned_cols=139  Identities=11%  Similarity=-0.000  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+...+..++.....+.+..+++.|+++.+|++..+++.....+.+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            44444555555566677888899999999999999999999999999999999999999998 99988888777666665


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      .++.+...     +.                   .+...+++..++.+++.|...+...++.+|.+| ++      +++.
T Consensus       306 ~~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~  354 (366)
T TIGR00886       306 FLVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAV  354 (366)
T ss_pred             HHHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccH
Confidence            55544310     00                   144445555556666666666777788888887 45      8999


Q ss_pred             HHHHHHHHHHH
Q 006712          231 FNFFYLSVTVG  241 (634)
Q Consensus       231 ~~~~~~~~~lg  241 (634)
                      .++.+...++|
T Consensus       355 ~g~~~~~~~~g  365 (366)
T TIGR00886       355 SGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHhccCC
Confidence            98877766665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.55  E-value=9.9e-06  Score=86.87  Aligned_cols=140  Identities=12%  Similarity=-0.044  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 006712           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (634)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (634)
                      .....+.|+++.+|.+..+.++.......+..++.++.+++.||+ ||+....  .....++.+.......   . ..  
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~---~-~~--  296 (394)
T PRK11652        226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQS--VICCLLAGLLMWIPGW---F-GV--  296 (394)
T ss_pred             HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHH---h-cc--
Confidence            344556788888999999999988888888888888899999987 7433332  2222222222211100   0 00  


Q ss_pred             cccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 006712          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (634)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~  247 (634)
                                       .+.+.++++..+.|++.+...|...++..|.+|+ +      +++..++.+...++|..+++.
T Consensus       297 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~  352 (394)
T PRK11652        297 -----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAAL  352 (394)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHH
Confidence                             2345566777889999999999999999998874 5      788888988888999999999


Q ss_pred             HHHHHhhccchHH
Q 006712          248 LVVYIQMEHGWGS  260 (634)
Q Consensus       248 i~~~l~~~~gw~~  260 (634)
                      +++++.....+..
T Consensus       353 ~~~~~~~~~~~~~  365 (394)
T PRK11652        353 LSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHccCCchHHH
Confidence            9998876544443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.54  E-value=9.5e-06  Score=85.93  Aligned_cols=177  Identities=8%  Similarity=0.069  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      .+|...+........|+..-...+.|.+..++   .++...|.+.+.-.+.-++.-.+..++-+|+ |.|+.++++.++.
T Consensus       221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~  299 (412)
T PF01306_consen  221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIM  299 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHH
Confidence            45555554444444454444446778876554   3445678888888888889999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      ++=.++++++                            .+.+.+.+.+.+.|+-.+.......-|+++.+|++-      
T Consensus       300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------  345 (412)
T PF01306_consen  300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------  345 (412)
T ss_dssp             HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred             HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence            8888888887                            678889999999999999999999999999999987      


Q ss_pred             hhhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 006712          227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       227 r~~~~~~-~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                      ..+...+ ++.+..+|..+.+.++|++.|+.|.+..|++.+.+++...++..+..+
T Consensus       346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            7788877 466889999999999999999999998998877766555555444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.52  E-value=6e-06  Score=89.28  Aligned_cols=140  Identities=14%  Similarity=0.026  Sum_probs=103.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCc
Q 006712          420 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD  499 (634)
Q Consensus       420 ~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (634)
                      ...+..+...+..++.+.+.||++||.           .+..+.++.+++.+.....                       
T Consensus        56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~-----------~l~~~~~~~~~~~~~~~~a-----------------------  101 (413)
T PRK15403         56 SVSLYLAGGMALQWLLGPLSDRIGRRP-----------VLITGALIFTLACAATLFT-----------------------  101 (413)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHcCchH-----------HHHHHHHHHHHHHHHHHHc-----------------------
Confidence            334445666677888899999998884           3666777766666555433                       


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccC
Q 006712          500 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN  579 (634)
Q Consensus       500 ~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~  579 (634)
                      .+.+++++.-++.|+++++..+.....+.+..|++.+++++++.+....++..+++.+.+.+.+..        +|    
T Consensus       102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~--------gw----  169 (413)
T PRK15403        102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV--------HW----  169 (413)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CH----
Confidence            256677777888899998777777788888999999999999999999999999999988765522        35    


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHhhccce
Q 006712          580 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  611 (634)
Q Consensus       580 ~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~  611 (634)
                            ++.|++.+++.++..+..++..++++
T Consensus       170 ------~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        170 ------KVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence                  56788777777776665555555543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.47  E-value=1.7e-05  Score=78.68  Aligned_cols=181  Identities=10%  Similarity=0.076  Sum_probs=117.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      ||..+.....+..+.. ..|....+ ...+++.+|+|.+|...+...-.++..++ ++.|.+.|++ |.+.++++|.+..
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~   76 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG   76 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence            4554444444433332 33444433 56788999999999999999999999875 8889999998 9999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .+|..++.++..-.  .+.                   ...+.+.+..++.|.+.+...........+.||. +      
T Consensus        77 ~~GY~~~~l~~~~~--i~~-------------------~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------  128 (250)
T PF06813_consen   77 FVGYGLLWLAVSGR--IPS-------------------LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------  128 (250)
T ss_pred             HHHHHHHHHHHhCc--cCc-------------------cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence            99999988763211  010                   3455666666666677666655555666688985 5      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHh
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~  279 (634)
                      ||+..++.--...+++.+-..+...+-....-...+.+.....++.++..++.
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhe
Confidence            89999887666666666555444433333222333333333344444443333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.46  E-value=1.2e-05  Score=81.29  Aligned_cols=140  Identities=21%  Similarity=0.275  Sum_probs=108.4

Q ss_pred             HHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 006712           96 MFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (634)
Q Consensus        96 l~~~~~~s~--~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (634)
                      ...+++.+.  ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+.+.+...               
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------------   91 (338)
T COG0477          28 LLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------------   91 (338)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------------
Confidence            334455454  5789999999999999999999999998 9998888888765555455554310               


Q ss_pred             cccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC-CCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHH
Q 006712          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVY  251 (634)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~-~~~~~~~~r~~~~~~~~~-~~~lg~~~~p~i~~~  251 (634)
                                 .+...+++.|+++|++.+...+...+++.|.+|. +.      |+...+.... ...+|..++|.+++.
T Consensus        92 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T COG0477          92 -----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAGL  154 (338)
T ss_pred             -----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       2467888899889999999999999999999998 44      8888888777 578888888877776


Q ss_pred             Hhhc--cchHHHHHHHHHH
Q 006712          252 IQME--HGWGSAFGALAIA  268 (634)
Q Consensus       252 l~~~--~gw~~~f~~~~~~  268 (634)
                      +...  .+|++.|.+....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         155 LLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHhcchHHHHHHHHHH
Confidence            6543  5788866555444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.43  E-value=0.0012  Score=70.78  Aligned_cols=190  Identities=11%  Similarity=-0.061  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .+.+-...++.+.+--+.-...+.|+..-+.-+---.+..-..-.+...++.+..|..-||. -|.+++..+.+..-+..
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence            45555666666666655555667788776543433333333344555667777888899998 99999998887766555


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCc-cchhHHHHHHHHHHHH-HhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPA-KSWQMLYLYTVLYITG-FGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g-~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      ...+.....-...+.              ... +..-...+++...+.| +..-.......+.=-|+...=..+....+.
T Consensus        83 ~~s~~~~~~l~~~~~--------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La  148 (432)
T PF06963_consen   83 AASCALFLLLLSYPS--------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA  148 (432)
T ss_pred             HHHHHHHHHHHhCCc--------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH
Confidence            444432111111110              000 0011122222222222 222122222223333443211111111133


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~  275 (634)
                      +.-+...-.=.+--.+||++.|.+....+......+.++..++++.+
T Consensus       149 ~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  149 RMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            33333333334567889999999988888877766666665555554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.42  E-value=2.8e-05  Score=85.36  Aligned_cols=157  Identities=10%  Similarity=0.016  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Q 006712           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (634)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~  152 (634)
                      .++...++..++..........|.+..+| +....+.+...+.++..++.+++++++||+ |+|+++..+..+..+..++
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~  309 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLA  309 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence            33334444444443333333333333344 344455677778888889999999999998 9998877555544333333


Q ss_pred             HHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh-hhhHH
Q 006712          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRFF  231 (634)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-r~~~~  231 (634)
                      ..+.       +.                   .+...+++..++.|++.+...+...++++|..+-++-+.-.. -+..+
T Consensus       310 ~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~  363 (460)
T PRK11462        310 MFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISF  363 (460)
T ss_pred             HHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHH
Confidence            2221       10                   223334445566788877777777888888877432111000 23445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Q 006712          232 NFFYLSVTVGAIVAFTLVVYIQMEHG  257 (634)
Q Consensus       232 ~~~~~~~~lg~~~~p~i~~~l~~~~g  257 (634)
                      +.+.+...+|.++++.++|++.+..|
T Consensus       364 a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        364 AGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66667888888888888877654333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=1e-06  Score=90.41  Aligned_cols=146  Identities=17%  Similarity=0.157  Sum_probs=124.6

Q ss_pred             ccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccc
Q 006712          415 LPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFL  494 (634)
Q Consensus       415 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (634)
                      ...+.+....++..++..|+.+.++||++.|..           +.+|++++..+-+++++.+                 
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-----------m~~Gl~vmf~sTilFafg~-----------------  157 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-----------MVAGLFVMFLSTILFAFGN-----------------  157 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccccH-----------HHHHHHHHHHHHHHHHHcc-----------------
Confidence            345666777888899999999999999888854           8999999999999988775                 


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh-HHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCC
Q 006712          495 TAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQP  573 (634)
Q Consensus       495 ~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~  573 (634)
                            ++..+++.-.+.|+|..+..+...+.+.+.+|++. ||.++|+......+|..+|+-+++++++..|       
T Consensus       158 ------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-------  224 (464)
T KOG3764|consen  158 ------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-------  224 (464)
T ss_pred             ------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-------
Confidence                  56678888999999999999999999999999986 6999999999999999999999999988655       


Q ss_pred             CccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcccee
Q 006712          574 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  612 (634)
Q Consensus       574 ~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~  612 (634)
                                 ..--|+++++++++...+-+++.+.++.
T Consensus       225 -----------k~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  225 -----------KSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             -----------CcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence                       1234899999999988888877765543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.36  E-value=3.6e-05  Score=80.34  Aligned_cols=167  Identities=16%  Similarity=0.133  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 006712           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (634)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~  158 (634)
                      ++..++++.-=..+-+|--+.||++..+.......+..+..++..+.|++..|-.+++++..+++.+..++..+..++..
T Consensus       218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~  297 (403)
T PF03209_consen  218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP  297 (403)
T ss_pred             HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445554444556788889999999999999999999999999999998885459999999999998888877777643


Q ss_pred             hcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHH
Q 006712          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (634)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~  238 (634)
                      .                         .+.+.+..+.+++|++.|.+.....+.+-|+..+++      -+..++.|..+.
T Consensus       298 ~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQ  346 (403)
T PF03209_consen  298 L-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQ  346 (403)
T ss_pred             c-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHH
Confidence            1                         456788899999999999999888888999998888      889999999999


Q ss_pred             HHHHHHHHHHHHHHhhc----------cchHHHHHHHHHHHHHHHHHH
Q 006712          239 TVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF  276 (634)
Q Consensus       239 ~lg~~~~p~i~~~l~~~----------~gw~~~f~~~~~~~~i~~~~~  276 (634)
                      .+..++|-.++|.+.|-          .+|..+|.+-++..++++++.
T Consensus       347 A~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  347 AIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888876541          246666666666655555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.34  E-value=0.0067  Score=66.01  Aligned_cols=169  Identities=11%  Similarity=0.014  Sum_probs=104.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhHHHHH
Q 006712           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIAI  141 (634)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~-----s~~~~~~~~~~~~~~~~~~-~l~~G~lsDr~~GRr~~i~~  141 (634)
                      ++.++...+.-|+.-+.|+.+.+     +.+.+..     +.+...++-+...+.+.+. .++.+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            45567777777777777766554     4555555     3356667666665655555 88899999998 99999888


Q ss_pred             HHHHHHHHHHHHHHhhhhc--ccCCCCCcccccccccCCCCCccch------hHHHHHHHHHHHHHhhhchhh-hHHHHh
Q 006712          142 FTTIYLAGLTGITLCATMK--VFMPNQDNCDRISQLLGSCEPAKSW------QMLYLYTVLYITGFGAAGIRP-CVSSFG  212 (634)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~g~g~~~~-~~~~~~  212 (634)
                      ....+.....++++.....  .++|+ +.|++-.    .-.+++-.      +.|...+.-+...+-...... .-.++.
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~~~----~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fa  154 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPT-ALADKLL----SLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFA  154 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCc-HHHHHHH----hhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777766666542210  11111 1111100    00000000      011111111223333333444 677899


Q ss_pred             hccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006712          213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (634)
Q Consensus       213 ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~  253 (634)
                      .|.+..++      -.|.+++++.+.|+|..+++.+..++.
T Consensus       155 ndi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998      889999999999999999999888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.34  E-value=8e-06  Score=90.14  Aligned_cols=109  Identities=11%  Similarity=0.041  Sum_probs=84.1

Q ss_pred             chhHHHHHHHHHHHHHHHhh-hhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcc
Q 006712          422 VFPGLSIFLILSLYYSTFVP-LCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL  500 (634)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~-l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (634)
                      ........+..++.+++.|| ++||+           .+.+|.++.+++.+.+++...                      
T Consensus        57 ~~~~~~~~~~~~~~G~laDr~~G~r~-----------~~~~g~~~~~~g~~~~~~~~~----------------------  103 (489)
T PRK10207         57 GAFAALVYGLISIGGYVGDHLLGTKR-----------TIVLGAIVLAIGYFMTGMSLL----------------------  103 (489)
T ss_pred             HHHHHHHHHHHhhHHHhhhhccchHH-----------HHHHHHHHHHHHHHHHHHhcc----------------------
Confidence            33444555667788999998 78874           378888888888777664321                      


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 006712          501 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--MKSIGSAYAALAGGLGCFAASILNSIIKS  563 (634)
Q Consensus       501 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~ig~~lg~~l~~~v~~  563 (634)
                      ....+....++.++|.++..|...+++.+++|++  .|+.+.+++++..++|..+|+.+.+.+.+
T Consensus       104 ~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        104 KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222335667789999999999999999999887  45778999999999999999999998866

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.29  E-value=4.1e-05  Score=84.86  Aligned_cols=174  Identities=14%  Similarity=0.105  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhCCChh------HHHHHHHHHHHHHHHHHHHH----HHHhhhccchhHHHHHHHHH
Q 006712           78 EMAERMAYFGLSVNMVTFMFY--VMHKSFA------DSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~--~~~~s~~------~~~~~~~~~~~~~~~~~l~~----G~lsDr~~GRr~~i~~~~~~  145 (634)
                      .++....++.+...++.++..  ..+.+..      ..++..+.-.+...++.++.    +++.||+ +..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            335556666666666666543  1112211      13444444454445555555    6666665 777888999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.+.+.+......-      +             ...+.+++++..+++|+|.+...|...+++.+..|++.     
T Consensus       360 ~~l~f~~l~~~~~~~~~------~-------------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~-----  415 (500)
T PRK09584        360 CSGAFLVLPLGAKFAND------A-------------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL-----  415 (500)
T ss_pred             HHHHHHHHHHHHHhcCC------C-------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH-----
Confidence            99888887765321100      0             01345678888999999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~----------~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                       |++.++.+..+..+|+.++..+.+....          ..+..+.|...++..++..++++
T Consensus       416 -rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        416 -MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence             9999999988888887777666543221          11355666655554443333333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.28  E-value=2e-05  Score=86.30  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=91.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHhhh-hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCC
Q 006712          420 MPVFPGLSIFLILSLYYSTFVPL-CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP  498 (634)
Q Consensus       420 ~~~~~~~~~~l~~~~~~~~~~~l-~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (634)
                      +.........+..++.+++.||+ +||+           .+.+|.++.+++.+++....                     
T Consensus        50 i~~~~~~~~~l~~ligG~LaDRilGrrr-----------~iliG~il~~lg~lll~~~~---------------------   97 (493)
T PRK15462         50 LFSAYCSLVYVTPILGGFLADKVLGNRM-----------AVMLGALLMAIGHVVLGASE---------------------   97 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHHHHHHHHhh---------------------
Confidence            33334455566777889999998 7763           36788888877765544221                     


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 006712          499 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  576 (634)
Q Consensus       499 ~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~  576 (634)
                       .+...+.....+..+|.++..+...+++.+.+|++  .|+.+.++++...++|+.+++.+.+.+.+..        +| 
T Consensus        98 -~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~--------Gw-  167 (493)
T PRK15462         98 -IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY--------SW-  167 (493)
T ss_pred             -cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh--------Ch-
Confidence             01122333344555677777777788999999976  7999999999999999999999999876532        24 


Q ss_pred             ccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 006712          577 AQNINTGRFDYLYWLLAVLSVINFCAFLY  605 (634)
Q Consensus       577 ~~~~~~~~~~~~f~~~a~~~~v~~~~~~~  605 (634)
                               ++.|.+.++..+++++.+++
T Consensus       168 ---------~~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        168 ---------AMGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHH
Confidence                     55677655555555554443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.26  E-value=4.3e-05  Score=80.14  Aligned_cols=165  Identities=12%  Similarity=0.058  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHH-HHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTT  144 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~---~GRr~~i~-~~~~  144 (634)
                      +.++.+..+.+...+++..=..+++.|+. .+|.+....+.+-..--+...+.+|+.|..|||.   +||||-++ .+.+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            66777777888888888777778888876 6899988888888888888899999999999985   58877555 4455


Q ss_pred             HHHHHHHHHHHhhhhcc-cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcch
Q 006712          145 IYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~  223 (634)
                      ...++.++...+..+.. +.+.          .  -++........++++..+.=+..-..+...-++++|+...++   
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~----------~--~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~---  175 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDN----------E--RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA---  175 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCC----------c--ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh---
Confidence            56666666666533221 1111          0  011233566677777778888888888999999999998777   


Q ss_pred             hhhhhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 006712          224 KTHLDR-FFNFFYLSVTVGAIVAFTLVVYI  252 (634)
Q Consensus       224 ~~~r~~-~~~~~~~~~~lg~~~~p~i~~~l  252 (634)
                         +.+ +.+++...+.+|..+|..+++|.
T Consensus       176 ---~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  176 ---KKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ---hhhccchhHHHHHHhcceeeeeccccc
Confidence               333 88899999999999988777654

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.24  E-value=6.2e-05  Score=77.98  Aligned_cols=155  Identities=13%  Similarity=0.067  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      .....+..|+..-+=..+.++++.|+.+..|.+..+++..++.+..+.+++..++-++-.|+ -..|++.+.+++..+-.
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            34444444554444445667899999988999999999999999999999999999988887 88888888876555444


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      +...+.                            .+ ..-+.+.++.|+..+.++|.+.+...+..|++.+     ++++
T Consensus       317 ~~~~l~----------------------------~g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~  362 (422)
T COG0738         317 LAVALI----------------------------GG-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSG  362 (422)
T ss_pred             HHHHHh----------------------------cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccce
Confidence            444443                            23 3334456789999999999999999999996552     3332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  263 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~  263 (634)
                         .-.+..+|+++-|.+.|++.|..|-...+.
T Consensus       363 ---~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         363 ---LLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             ---eeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence               222445899999999999999998777666

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.23  E-value=2.2e-05  Score=84.04  Aligned_cols=157  Identities=14%  Similarity=0.037  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      ....++..++...++....+..+.|.+..+|.+.....+.......+..++.++...+++|+ |+|+++.++.++.+++.
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~  316 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY  316 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence            44555566666666666666667777778888888888888888888888899999999998 99999999999999999


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh-hhh
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDR  229 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~-r~~  229 (634)
                      +++.+..       .                   .+..++++..++.++|.+...+...++++|..+-++-+.-+. -|.
T Consensus       317 ~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi  370 (467)
T COG2211         317 LLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGI  370 (467)
T ss_pred             HHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhh
Confidence            8888862       1                   567888888899999999999999999999887443221111 233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                      .++...+..=+|.+++..+.|++..
T Consensus       371 ~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         371 VYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555556666666666665543

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.20  E-value=0.0002  Score=76.85  Aligned_cols=109  Identities=13%  Similarity=0.099  Sum_probs=90.0

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCC
Q 006712          418 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  497 (634)
Q Consensus       418 ~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (634)
                      +.+.........+...+.+++.||++-|.           .+.++++..++..++.++..                    
T Consensus        65 G~I~s~F~ysYal~qIp~GlLaDrlG~K~-----------vL~l~~l~Wsl~t~L~~fa~--------------------  113 (511)
T TIGR00806        65 NEIIPVLPYSHLAVLVPVFLLTDYLRYKP-----------VLVLQALSFVCVWLLLLLGT--------------------  113 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCchH-----------HHHHHHHHHHHHHHHHHHHH--------------------
Confidence            33444455566777888889999888773           37777777777777766653                    


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006712          498 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  561 (634)
Q Consensus       498 ~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v  561 (634)
                         +...+.+.-+++|++|+... ....++++.+|++.|++++|+++....+|.++++.+.+.+
T Consensus       114 ---Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 ---SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               57788888899999999999 9999999999999999999999999999999999999984

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=98.18  E-value=9.2e-05  Score=82.56  Aligned_cols=131  Identities=14%  Similarity=0.071  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHH
Q 006712          430 LILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQY  509 (634)
Q Consensus       430 l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~  509 (634)
                      ++.++.+++.|++++|.           .+.+|.++..++.++.++....                ... .+.+.+.+..
T Consensus        76 ~~~lp~G~L~Dr~G~R~-----------vllig~ll~~iG~ll~ala~~~----------------~i~-~s~~~l~l~r  127 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPRP-----------IFVLSMTVFCLGTLLFALTFQE----------------VIE-GSVVRLSVYN  127 (591)
T ss_pred             HHHHHHHHHHHHhCcHH-----------HHHHHHHHHHHHHHHHHHHhcc----------------ccc-CcHHHHHHHH
Confidence            34456788999988884           3788888888888877764211                001 2567777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHH
Q 006712          510 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLY  589 (634)
Q Consensus       510 ~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f  589 (634)
                      ++.|+|+++..+.....+.+.+| +.||.++|+.....++|+.+.+.+...+.. .        +|          ..+|
T Consensus       128 ~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~--------~~----------~~~f  187 (591)
T PTZ00207        128 GLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D--------NT----------SAYF  187 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------hH----------HHHH
Confidence            89999999999999999999987 679999999999999999865544443322 0        12          3556


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 006712          590 WLLAVLSVINFCAFLYSAY  608 (634)
Q Consensus       590 ~~~a~~~~v~~~~~~~~~~  608 (634)
                      ++++++.++..++.+.+.+
T Consensus       188 l~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        188 FFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHhhee
Confidence            7677776666666555544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.15  E-value=0.00014  Score=80.70  Aligned_cols=139  Identities=12%  Similarity=0.198  Sum_probs=100.8

Q ss_pred             CccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCC
Q 006712          417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA  496 (634)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (634)
                      ..++...+.+...+..|+.+++.|.++||..           +.+|.++..+|+++.+...                   
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-----------~i~g~~l~vvG~Iv~atA~-------------------  129 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-----------FIIGSLLGVVGSIVCATAQ-------------------  129 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcchHH-----------HHHHHHHHHhHHHHhhcCC-------------------
Confidence            4566777888888899999999999999943           7888888888888766432                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcc
Q 006712          497 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL  576 (634)
Q Consensus       497 ~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~  576 (634)
                          +...++....+.|+|.+.... ....+.|..|.+.|..+.++.....-+....++.+...+..        ..+| 
T Consensus       130 ----~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~--------~~~W-  195 (599)
T PF06609_consen  130 ----NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA--------HSGW-  195 (599)
T ss_pred             ----cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc--------CCCc-
Confidence                456677788888888776654 35558999999999998887776555555566666554432        1346 


Q ss_pred             ccCCccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 006712          577 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAY  608 (634)
Q Consensus       577 ~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~  608 (634)
                               .|.|++.+.+..++++..+++++
T Consensus       196 ---------Rw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  196 ---------RWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             ---------chHHHHHHHHHHHHHHHHHHHhC
Confidence                     56777777777777666665554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.14  E-value=1.4e-05  Score=85.27  Aligned_cols=172  Identities=8%  Similarity=-0.090  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 006712           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (634)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~  155 (634)
                      +..++..++.-.+.+++--++ ++.+-.+..-|.....-..+-++.-++.++|-.++ |+-+++.+++..+++=.+....
T Consensus       378 ~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~  455 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY  455 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence            334444444444555554444 45565555566566666677778888999999998 9999999999888876666655


Q ss_pred             hhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHH
Q 006712          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (634)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~  235 (634)
                      .                            +|.|+.+..-+++|+..+.++.++.+|+.+..|++-      |.++-++..
T Consensus       456 L----------------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~  501 (618)
T KOG3762|consen  456 L----------------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQ  501 (618)
T ss_pred             h----------------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHH
Confidence            4                            688999999999999999999999999999999999      899988865


Q ss_pred             H-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhcccc
Q 006712          236 L-SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY  283 (634)
Q Consensus       236 ~-~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~  283 (634)
                      . .-.+|-.+|.+++|.+.+.+|-+..|.+.++.+++.++.+....+..
T Consensus       502 g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  502 GIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             HHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            5 56889999999999999999999999998888877777766554443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.10  E-value=0.0002  Score=69.81  Aligned_cols=152  Identities=17%  Similarity=0.114  Sum_probs=90.2

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccc
Q 006712           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (634)
Q Consensus        93 ~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (634)
                      ..|+-+.+++...+.+.+.-.-.....++..+.|-|+|+- |||+.-+..++.    .+++.+.-.              
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycit----YiLsCiTKh--------------  120 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCIT----YILSCITKH--------------  120 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHH----HHHHHHhhc--------------
Confidence            4567778889888888877777777788888999999997 999986555544    444444311              


Q ss_pred             ccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHH-hhccCCCCCcchhhhhhhHHHH-HHHHHHHHHHHHHHHHH
Q 006712          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF-GADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVV  250 (634)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~ad~~~~~~~~~~~~r~~~~~~-~~~~~~lg~~~~p~i~~  250 (634)
                                 .++.-.++++|++-|+..+.......+. ++|.-.++.=+ ++=...-++- ..++..+-+.++.+.+.
T Consensus       121 -----------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGlfgn  188 (454)
T KOG4332|consen  121 -----------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGLFGN  188 (454)
T ss_pred             -----------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence                       0456788999999999998877666554 46655333211 0001111111 11122233344444445


Q ss_pred             HHhhccc--hHHHHHHHHHHHHHHHHH
Q 006712          251 YIQMEHG--WGSAFGALAIAMGISNML  275 (634)
Q Consensus       251 ~l~~~~g--w~~~f~~~~~~~~i~~~~  275 (634)
                      .+.+..+  -..+|-.++....++..+
T Consensus       189 ~lvd~~slGPVAPFdAAacfLaigmAv  215 (454)
T KOG4332|consen  189 LLVDTFSLGPVAPFDAAACFLAIGMAV  215 (454)
T ss_pred             HHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            5555543  445565554444444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.06  E-value=0.00036  Score=76.14  Aligned_cols=208  Identities=14%  Similarity=-0.012  Sum_probs=142.2

Q ss_pred             cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChh------H----HHHHHHHHHHHHHHHHHHHHHHhh
Q 006712           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------D----SSNAVNNFLGISQASSVLGGFLAD  130 (634)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----~~~~~~~~~~~~~~~~l~~G~lsD  130 (634)
                      +..++-++.++.++..+++..++++.+..+...|+.+ .+|-++.      +    ..+....+.+...+..++--++.+
T Consensus       251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~  330 (477)
T TIGR01301       251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR  330 (477)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457778899999999999999999999998999875 4543221      1    234445555555566667777888


Q ss_pred             hccc-hhHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhH
Q 006712          131 AYLG-RYWTIAIFTTIYLAGLTGITLCATMKVF-MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV  208 (634)
Q Consensus       131 r~~G-Rr~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~  208 (634)
                      |+ | ||++..++.++..+++....+....+.. .+    .++ ++  . --.+.....+..++...+.|+..+.....-
T Consensus       331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~----~~~-~~--~-~~~~~~~~~~~~l~~~~~~Gi~~A~~~siP  401 (477)
T TIGR01301       331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY----YDG-DG--E-SLPPPTGIKASALIVFAILGIPLAITYSIP  401 (477)
T ss_pred             Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc----ccc-cc--c-ccCcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence            87 8 5777789988888887777654321100 00    000 00  0 000011123556666678999999999999


Q ss_pred             HHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHHhccc
Q 006712          209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       209 ~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g--w~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                      .+++++..+++..+    .|..+++++.++.+...+..+..|.+.+..|  -.+.+.+.++.++++.+..+...|+
T Consensus       402 fal~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       402 FALASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999865421    6999999999999999999888777655444  4567778888877777766665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.05  E-value=2.9e-05  Score=84.78  Aligned_cols=163  Identities=13%  Similarity=0.118  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIYL  147 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~---~GRr~~i~~~~~~~~  147 (634)
                      +|...+..++.....|++..++|.|+++..|+|..+++.....+.++..++.+++|+++||.   ..+|..+...+.++.
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            78888889999999999999999999986779999999999999999999999999999993   266666666655544


Q ss_pred             H-HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       148 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      + |.+.+...                            .+......+.+....+.+...++......+....+.+     
T Consensus       355 ~~g~~~l~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----  401 (495)
T KOG2533|consen  355 IIGAISLLAA----------------------------AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----  401 (495)
T ss_pred             HHHHHHHHhh----------------------------ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----
Confidence            3 32333322                            1122222222333344444455555556666655441     


Q ss_pred             hhhHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHH
Q 006712          227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALA  266 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~-~p~i~~~l~~~~gw~~~f~~~~  266 (634)
                      |-+..+.+..+.+.++.+ +++..+.....++|...|+...
T Consensus       402 ~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  402 ALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             hHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            555555555554444444 4444455555678888885433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.01  E-value=3.3e-05  Score=84.85  Aligned_cols=136  Identities=10%  Similarity=-0.152  Sum_probs=106.7

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCccccccccc
Q 006712           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (634)
Q Consensus        97 ~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (634)
                      .+.+|+++.+.|.+.....++..++..+.+.+.+|+ +.|+++.++.++..++.....+....+.....   .       
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g---i-------  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG---I-------  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC---C-------
Confidence            457899999999999999999999999999999987 99999999998888776554321100000000   0       


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (634)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~  256 (634)
                              .+...+...-++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.+..
T Consensus       349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                    112234444578888888888888999999999999      999999999999999999999999998876


Q ss_pred             c
Q 006712          257 G  257 (634)
Q Consensus       257 g  257 (634)
                      |
T Consensus       415 g  415 (468)
T TIGR00788       415 G  415 (468)
T ss_pred             C
Confidence            6

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.00  E-value=3.6e-08  Score=107.76  Aligned_cols=188  Identities=14%  Similarity=0.089  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      .....+....+..+..+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||++++++..+..+.
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            344444444444444433444445555566677666  2222333455556777888999998 9999999998887776


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+.+.....   ..+.               .+...+...+....+.......+..+....+.+|.||++.      |.+
T Consensus       330 ~~~~~~~~~---~~~~---------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~  385 (451)
T PF00083_consen  330 SLILGIIFF---LGVS---------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RST  385 (451)
T ss_pred             ccccccccc---cccc---------------cccccccccceeeeeccccccccccccccccccccccccc------ccc
Confidence            665541000   0000               0000122222211111112222344666688899999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~  284 (634)
                      +.++.+....+++.++|.+..++.+..+-...|++.+++.++..+..++..|+.+
T Consensus       386 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  386 GIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             ccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence            9999888888999999888877777666334555555555555555555455443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.91  E-value=9.7e-05  Score=59.08  Aligned_cols=69  Identities=17%  Similarity=-0.026  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      -...++...+...+.++++.|+.+ .|+|..+.+.+.++..+...++++++|+++||+ ||++.++....+
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            344455556666677889999884 899999999999999999999999999999998 988877766554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.90  E-value=0.00029  Score=78.53  Aligned_cols=196  Identities=13%  Similarity=0.047  Sum_probs=106.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +..++......+..++..++.+....+....+-+..|.+... .+...+......++..++.++-||+ |||+.++.+.+
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence            344555555555555555444333333344445556665443 4555556666677778889999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchh
Q 006712          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (634)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  224 (634)
                      .+.++.++++...........   +            ........+....+.......+..|....+.+|.+|.+.    
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~----  428 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL----  428 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence            999999988876432111000   0            000112222222223333333445566678899999999    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHHHhcccc
Q 006712          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM-LFFIGTPLY  283 (634)
Q Consensus       225 ~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~-~~~~~~~~~  283 (634)
                        |+.+.++-.....+...+-...--.+.+..++...|.+......+..+ ..+...++.
T Consensus       429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence              888888844433333322222222222332234455554444444444 334444443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.89  E-value=1e-05  Score=84.62  Aligned_cols=182  Identities=15%  Similarity=0.044  Sum_probs=124.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH--------HHHHHHHHHH-HHHHHHHHHhhhccchhH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFLGISQ-ASSVLGGFLADAYLGRYW  137 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~--------~~~~~~~~~~-~~~l~~G~lsDr~~GRr~  137 (634)
                      |-+..+-.++.-|+.-+++|+...+... +.+.+++.+.+...        ...+...... .+..++..+.|++ |||+
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~-I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~  379 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSV-IFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKY  379 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHH-HHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHH
Confidence            4466777888888888999988766443 34445554443322        1122222222 2556677789998 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHH-HHHHHhhhchhhhHHHHhhccC
Q 006712          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQF  216 (634)
Q Consensus       138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ad~~  216 (634)
                      .-+.+.+++++....++....  +.                      .+..-+++.- +.+-++.-+..+....+-+|.|
T Consensus       380 iq~~GF~~~~i~~~~~~~~y~--~~----------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~F  435 (538)
T KOG0252|consen  380 IQLMGFFIMTIFFFVIAGPYN--QL----------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIF  435 (538)
T ss_pred             HHHhhHHHHHHHHHHHcCCcc--cc----------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhc
Confidence            999999988877666665311  00                      1111122211 2333444455566666779999


Q ss_pred             CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHHHhc
Q 006712          217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFIGT  280 (634)
Q Consensus       217 ~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~-----~~gw~~~f~~~~~~~~i~~~~~~~~~  280 (634)
                      |++.      |+.+-++...+.-+|+.+|...-.++++     ..+.++.|++.+.++.++.+..++..
T Consensus       436 Parv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  436 PARV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             hHHH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence            9999      9999999999999999999999999998     77889999999988888877665544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.88  E-value=0.00011  Score=83.58  Aligned_cols=136  Identities=15%  Similarity=0.044  Sum_probs=95.3

Q ss_pred             CccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHhhh-------h--
Q 006712          417 VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY--RRNYA-------I--  485 (634)
Q Consensus       417 ~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~--~~~~~-------~--  485 (634)
                      .+++.....+...+..++.+++.||..||..           +++|+++++++.++.++..-.  +....       .  
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-----------i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-----------IGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhhcccCcceE-----------EEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence            4566667777778888888888888777643           788888888888777654210  00000       0  


Q ss_pred             ---hcCcccc--------------ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhH
Q 006712          486 ---SHGYEFS--------------FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG  548 (634)
Q Consensus       486 ---~~~~~~~--------------~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  548 (634)
                         ..-+..+              .........+..+++.-++.|+|++...+...+++.+.+|++.|+.+.|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence               0000000              00000001244566778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 006712          549 LGCFAASILNSIIKS  563 (634)
Q Consensus       549 ig~~lg~~l~~~v~~  563 (634)
                      +|..+|+.+.+.+.+
T Consensus       219 iG~~lG~llgg~l~~  233 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQ  233 (633)
T ss_pred             hhhHHHHHHHHHHHh
Confidence            999999999988765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.87  E-value=0.056  Score=57.33  Aligned_cols=61  Identities=16%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 006712          501 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII  561 (634)
Q Consensus       501 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v  561 (634)
                      +.|.+++..+..|+-.+..+......+.+..|++.|..++|+....-.+|-.++.++.-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4555555666778888888888888999999999999999999999999988888776544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.65  E-value=0.0023  Score=58.69  Aligned_cols=110  Identities=15%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccc
Q 006712          105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS  184 (634)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (634)
                      .......++......+..++...+-+++ |.|++++++.+.+.+-......                             
T Consensus        37 ~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------   86 (156)
T PF05978_consen   37 GLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------   86 (156)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence            3334445555566677778888889987 9999999999988765444332                             


Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006712          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (634)
Q Consensus       185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~  250 (634)
                      .+.+.++.+-.+.|++.+..+.....++.+..++++      |++..+++....+.+..+|.++.-
T Consensus        87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888899999999999999999999888877      777777766666666666655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.51  E-value=0.0019  Score=66.61  Aligned_cols=152  Identities=14%  Similarity=0.072  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIY  146 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~G-Rr~~i~~~~~~~  146 (634)
                      .+.+.++....+.+...|....+...++ .+.+|+++.|.|-+.+.-.+.+.+.++.-+...||..| -+-.+..++.+.
T Consensus       260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~  339 (451)
T KOG2615|consen  260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI  339 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence            4556666655555555566666666666 46799999999999998888888888888889998744 344444444444


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .-..++...+                            .....++++..+-.+..+...++...++....|+++      
T Consensus       340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------  385 (451)
T KOG2615|consen  340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------  385 (451)
T ss_pred             HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence            4344444443                            345778888889999999999999999999999999      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       227 r~~~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                      ||...|+......++-++||+++|.+..
T Consensus       386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  386 RGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            9999999999999999999999987754

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.41  E-value=0.027  Score=64.08  Aligned_cols=324  Identities=11%  Similarity=-0.038  Sum_probs=196.7

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccc
Q 006712           94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (634)
Q Consensus        94 ~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (634)
                      .+..--.+...........++....++..++....+|-.-|+-..+..-....++..+...+.+... . +         
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~-~---------   77 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-I-P---------   77 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-C-c---------
Confidence            3333334445556778889999999999999999999886777788888887777777776653310 0 1         


Q ss_pred             cccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006712          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (634)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~  253 (634)
                               .........+..+.+.++.++..++-+.+.+++++..++   ..+.+..++|++..+.+.+ |.+++..+.
T Consensus        78 ---------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~---~~~~~~~s~F~~fY~~iNi-GSlis~~i~  144 (654)
T TIGR00926        78 ---------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE---RQLSLRSRFFSFFYFAINA-GSLISTIIT  144 (654)
T ss_pred             ---------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc---cchhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence                     012334455677778899999999999999999987652   4455788999999887765 556666666


Q ss_pred             hccc-hHH------HHH-HHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCC
Q 006712          254 MEHG-WGS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGK  325 (634)
Q Consensus       254 ~~~g-w~~------~f~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~  325 (634)
                      .... +..      .|. ..++.+++.++.+......++..++.+.....+.++...+...++                 
T Consensus       145 ~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~-----------------  207 (654)
T TIGR00926       145 PILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR-----------------  207 (654)
T ss_pred             HHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH-----------------
Confidence            5433 221      133 344445555555555544444333332221122222211111100                 


Q ss_pred             ccccCCCcccccCCcchHHHHHHhhhccccCCCCCCcccc--chhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHH
Q 006712          326 HSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCT--VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQA  403 (634)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  403 (634)
                                            .............|.+..  ...+++.+...+++.++...+.+++.+.++......+.
T Consensus       208 ----------------------~~~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~  265 (654)
T TIGR00926       208 ----------------------KRFSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWT  265 (654)
T ss_pred             ----------------------HhhccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence                                  000000000011222211  11234567777788887777777877777666666666


Q ss_pred             hhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006712          404 YTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA-SQLQRVGIGLAVSILSVIWAGIFERYRRN  482 (634)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~-~~~~~i~~G~~l~~~~~~~~~~~~~~~~~  482 (634)
                      ..++...+.+.........++.+-.++..++...+..++.++.. |   . .++.++.-+.+.+.++.+.+...+....+
T Consensus       266 ~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~-~---~~~~ls~l~k~~iG~~la~la~~va~~ve~~  341 (654)
T TIGR00926       266 LQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA-K---CGTRFTSLRKMAVGGLLAALSFFVAALVQLK  341 (654)
T ss_pred             HHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH-h---cCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67776644333333345667777777777777776667887752 1   3 45667888888888888888877766665


Q ss_pred             hh
Q 006712          483 YA  484 (634)
Q Consensus       483 ~~  484 (634)
                      .-
T Consensus       342 ~~  343 (654)
T TIGR00926       342 VN  343 (654)
T ss_pred             Hh
Confidence            55

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.11  Score=53.71  Aligned_cols=158  Identities=14%  Similarity=0.118  Sum_probs=89.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-----hccchhHH
Q 006712           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT  138 (634)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsD-----r~~GRr~~  138 (634)
                      .++..+.+..+++..+...+-. |....+|. +-+.-|.|-++.+....+|  .=+-.-+++.++-|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~-lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPL-LLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhHH-HhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            4556667888888888877666 66665454 4445677766554332222  22334578888999     87 99997


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCC
Q 006712          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (634)
Q Consensus       139 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~  218 (634)
                      -++-+- +.+|.++..++.........     +          ...++...+....++.-+..+.---++-...-.+..+
T Consensus       101 Wvvp~q-~llG~~mllLs~~v~~~~g~-----n----------g~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~  164 (510)
T KOG3574|consen  101 WVVPCQ-YLLGLFMLLLSYLVDRGLGG-----N----------GGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR  164 (510)
T ss_pred             eeeehH-HHHHHHHHHHhhCCCccccc-----C----------CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence            665443 34566666665332111110     0          0012333333344455555555444555555566666


Q ss_pred             CCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006712          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (634)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i  248 (634)
                      ++      .+-+-.-...+.+.|.+++..+
T Consensus       165 e~------lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  165 EN------LGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             hh------cCchhHHHHHHHhhhHHhhcce
Confidence            66      5666555666777777776644

>PRK03612 spermidine synthase; Provisional

Probab=97.15  E-value=0.069  Score=59.33  Aligned_cols=177  Identities=14%  Similarity=0.072  Sum_probs=96.5

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-HHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTI  145 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~-~~~~~  145 (634)
                      +.+.+..+.+..-+..+++-.+   ..-.+...+|-+....+.++++|.++..+|..++|+++++. -|+...+ +...+
T Consensus        15 ~~~~l~~~~f~sg~~~L~yEv~---~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l   90 (521)
T PRK03612         15 DRALLLAAVFVCAACGLVYELL---LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLAL   90 (521)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHH
Confidence            3333444444443444444333   34455556788899999999999999999999999887553 2322211 11111


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ......++..... +.. .                    .....++...++.++..|+..|....+..+... ++     
T Consensus        91 ~~~~~~~ll~~~~-~~~-~--------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~-----  142 (521)
T PRK03612         91 LGGLSALILYAAF-AFQ-G--------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH-----  142 (521)
T ss_pred             HHHHHHHHHHHHH-HHH-H--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-----
Confidence            1111111111100 000 0                    111222333456677777777777766654322 12     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccch-HHHHHHHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGW-GSAFGALAIAMGISNMLF  276 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~-~~gw-~~~f~~~~~~~~i~~~~~  276 (634)
                       -++..+..|....+|+.+|.++.+++.- ..|- ...+.+..+..+++++.+
T Consensus       143 -~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~  194 (521)
T PRK03612        143 -LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL  194 (521)
T ss_pred             -hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence             3455677788888999999998887654 5663 444444444444444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.12  E-value=0.00011  Score=81.69  Aligned_cols=180  Identities=11%  Similarity=0.068  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYLA  148 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~lsDr~-~GRr~~i~~~~~~~~~  148 (634)
                      +....+....+.+...++.+++|.|+..+|+.++++++.+.+...+ +.+++.+++|++..|+ ++.|+++.+..+..++
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v  386 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV  386 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence            5667777788888888999999999999999999999999987765 6678999999999987 3455555555555444


Q ss_pred             HHHHHHHhhh-----hc--cc-CCC------------CCccccc------ccccCCCCCccchhHHHHHHHHHHHHHhhh
Q 006712          149 GLTGITLCAT-----MK--VF-MPN------------QDNCDRI------SQLLGSCEPAKSWQMLYLYTVLYITGFGAA  202 (634)
Q Consensus       149 ~~~~~~~~~~-----~~--~~-~~~------------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g  202 (634)
                      ..+.......     .+  -+ .+-            ...|+..      +.+.+.|+.+-..++..+++..++..+..+
T Consensus       387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~  466 (539)
T PF03137_consen  387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF  466 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence            4433111000     00  00 000            0012110      113345766633455566666555555555


Q ss_pred             chhhhHHHHhhccCCCCCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Q 006712          203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH  256 (634)
Q Consensus       203 ~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~-~~~lg~~~~p~i~~~l~~~~  256 (634)
                      ..........-...++++      |..+.++... .-.+|..-||++-|++.|..
T Consensus       467 ~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  467 MSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -------------------------------------------------------
T ss_pred             hcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            555555556668889998      9999999554 56778889999999888753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.06  E-value=0.0095  Score=59.17  Aligned_cols=104  Identities=13%  Similarity=0.015  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHH
Q 006712          431 ILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYC  510 (634)
Q Consensus       431 ~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~  510 (634)
                      ++.+.+.+.|+++.+.           .+.+|.++..+|..+....-.++                .++.+.|.+.....
T Consensus        52 ~G~~~G~l~d~~gp~~-----------~l~iG~~~~~~GY~~~~l~~~~~----------------i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   52 FGILAGLLYDRFGPWV-----------VLLIGAVLGFVGYGLLWLAVSGR----------------IPSLPVWLMCLFLF  104 (250)
T ss_pred             ccHHHHHHHHhcchHH-----------HHHHHHHHHHHHHHHHHHHHhCc----------------cCccchHHHHHHHH
Confidence            3566677878776653           37888888888887766544221                11135555555556


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006712          511 LIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  562 (634)
Q Consensus       511 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~  562 (634)
                      +.+.+..+.......-..+.+| +.||.+.|+.....++++.+-+.+...+.
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            6667777777888888889998 57999999999999999888887776554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.95  E-value=0.048  Score=60.81  Aligned_cols=145  Identities=11%  Similarity=0.083  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ..+.+.+..+...+.+|+..     +....+|.+..........   .........+.+-|++ |||.....+.++..++
T Consensus       323 ~~~~~~~~~~~~~~~y~gl~-----~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~  393 (521)
T KOG0255|consen  323 RTLYLLFIWFVFSLVYYGLS-----LNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIG  393 (521)
T ss_pred             HHHHHHHHHHHHhHHHHhhh-----hhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            34444444444445555433     3334455554433333333   3444445558899998 9999999999998888


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+..+....     .                    ...+...+...+..++.+........+.+|++|+..      |..
T Consensus       394 ~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~  442 (521)
T KOG0255|consen  394 LLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNT  442 (521)
T ss_pred             HHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHH
Confidence            888777521     0                    110123333334444555555666889999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                      +.+.......+|+.++|.+......
T Consensus       443 ~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  443 AVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999987655544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.92  E-value=0.0094  Score=64.43  Aligned_cols=161  Identities=12%  Similarity=0.080  Sum_probs=100.9

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCC
Q 006712          418 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  497 (634)
Q Consensus       418 ~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (634)
                      ++......+...++.|+++.+..|..          +.++.+.+|.++++++.+++...+..                  
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~----------~~k~Pli~s~ii~~~g~llY~~l~~~------------------  125 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTG----------SVKKPLIVSFLIAIIGNLLYLALAYV------------------  125 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccC----------CcccCHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            33444466777777777775543322          22455899999999999998666632                  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccc
Q 006712          498 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA  577 (634)
Q Consensus       498 ~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~  577 (634)
                      +.-..+++.+..++.|+|.+- ....=.|+++..-.+.|.++++..+..+.+|..+|+.+...+.....    .+-.|++
T Consensus       126 ~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~----~G~~i~~  200 (488)
T KOG2325|consen  126 PNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE----KGFMILP  200 (488)
T ss_pred             ccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC----CceEEcC
Confidence            201567788899999988554 23566777776666777777777777777777777777665544321    0111233


Q ss_pred             c-CCccchhhHHHHHHHHHHHHHHHHHHHhhccceec
Q 006712          578 Q-NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  613 (634)
Q Consensus       578 ~-~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~  613 (634)
                      . .+|.  +...=|+.+++.++..++.+++.+|..+.
T Consensus       201 ~~~~n~--YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  201 GLIFNM--YTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             cceEEe--cchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            1 2232  22335667777777777777777665443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.86  E-value=0.014  Score=47.34  Aligned_cols=64  Identities=8%  Similarity=-0.070  Sum_probs=57.7

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHh
Q 006712           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (634)
Q Consensus        92 l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~  156 (634)
                      +.+.+.++.++|.++++++.+...+++.++.+...++.++. .+++.+..+.++..+.++.+++.
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568889999999999999999999999999999999986 88899999999988888888875

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.79  E-value=0.0076  Score=65.59  Aligned_cols=127  Identities=11%  Similarity=0.057  Sum_probs=107.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHH-HhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcc
Q 006712           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGF-LADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (634)
Q Consensus        91 ~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~-lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (634)
                      .+..|+...++++..+.+...+.......++.++... +.-. +|-|+++..|++...+.....+++             
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~-------------  328 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA-------------  328 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence            3467888899999999999999999999999998884 5555 599999999999999999999987             


Q ss_pred             cccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 006712          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (634)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~  249 (634)
                                     ++.++++....+.++. +...|...++.+-+..+++      +++.+++....-.+.+.++|.+-
T Consensus       329 ---------------~~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~  386 (463)
T KOG2816|consen  329 ---------------TETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALY  386 (463)
T ss_pred             ---------------ccchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHH
Confidence                           5677777777555444 6678999999999999999      99999999999999999999887


Q ss_pred             HHHh
Q 006712          250 VYIQ  253 (634)
Q Consensus       250 ~~l~  253 (634)
                      +.+.
T Consensus       387 ~~i~  390 (463)
T KOG2816|consen  387 GNIF  390 (463)
T ss_pred             HHHH
Confidence            6553

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.60  E-value=0.0093  Score=62.99  Aligned_cols=184  Identities=13%  Similarity=0.046  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~  150 (634)
                      +.+...........+|++.+.+-.- ...-|++...+|.+.....++..++.++.|.++||.-.-|.++++......++.
T Consensus       268 F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~  346 (480)
T KOG2563|consen  268 FIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT  346 (480)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            4444444444445555554443222 234577888999999999999999999999999997233445555555544443


Q ss_pred             HHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhH
Q 006712          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (634)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~  230 (634)
                      ..+.....    .+                    ...+.++..-.+.|++..+..|...-+..|..-+..+      +..
T Consensus       347 ~~l~~~t~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~tS  396 (480)
T KOG2563|consen  347 LMLLTCTL----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------GTS  396 (480)
T ss_pred             HHHHHhhc----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------ccc
Confidence            21111111    11                    2234555556788888888889888888886555542      344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHHHHHHHhcccccc
Q 006712          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAFGALAIAMGISNMLFFIGTPLYRH  285 (634)
Q Consensus       231 ~~~~~~~~~lg~~~~p~i~~~l~~~~g----w~~~f~~~~~~~~i~~~~~~~~~~~~~~  285 (634)
                      .|+.+...++.+.+-.++-+...+..+    |...-+.......+.+++..+.++.+++
T Consensus       397 sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  397 SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            455555555555555666677666655    3322233333333444444444544443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.34  E-value=0.024  Score=64.02  Aligned_cols=178  Identities=13%  Similarity=0.081  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYLA  148 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~-~~~~~~l~~G~lsDr~-~GRr~~i~~~~~~~~~  148 (634)
                      +....+...++...+.+..+++|.|+.++++.+.+.+..+++...+ +.+++..++|++.-|+ +.-|.+..+.++..++
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            6677788889999999999999999999999999999999976654 5568899999999886 3455555555555444


Q ss_pred             HHHHHHHhhhh-----------------cccCCCC---Ccccc---------------c-----c-----------cc--
Q 006712          149 GLTGITLCATM-----------------KVFMPNQ---DNCDR---------------I-----S-----------QL--  175 (634)
Q Consensus       149 ~~~~~~~~~~~-----------------~~~~~~~---~~~~~---------------~-----~-----------~~--  175 (634)
                      .++......++                 +....++   +.|+.               +     |           .+  
T Consensus       474 ~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~  553 (735)
T KOG3626|consen  474 SLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDG  553 (735)
T ss_pred             HHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCC
Confidence            43331110000                 0000111   01321               0     0           00  


Q ss_pred             ----------------c-----CCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHH
Q 006712          176 ----------------L-----GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (634)
Q Consensus       176 ----------------~-----~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~  234 (634)
                                      +     +.|+.+.......|++..++.-+..+...+....++-...++++      |.-++|+.
T Consensus       554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~~  627 (735)
T KOG3626|consen  554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGFQ  627 (735)
T ss_pred             ceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHHH
Confidence                            0     12444544444445544444444445555566667778899998      99999995


Q ss_pred             HH-HHHHHHHHHHHHHHHHhh
Q 006712          235 YL-SVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       235 ~~-~~~lg~~~~p~i~~~l~~  254 (634)
                      .+ .-.+|..-+|++-|++.|
T Consensus       628 ~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  628 WMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             HHHHHHHhcCCchHhhhhhHh
Confidence            55 567788889999999876

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.28  E-value=2.4  Score=46.65  Aligned_cols=175  Identities=11%  Similarity=0.039  Sum_probs=94.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAI  141 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~~~~~~~~~~~-~~~~~~l~~G~lsDr~~GRr~~i~~  141 (634)
                      .-++.++.+.+.-|+..+.+..+..     +.+.+   ..+++....+-....+ ...+...+-.++++++ +|.+++.+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~   94 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            3455577777766666555543322     22211   1234444444443333 4455677889999997 99999888


Q ss_pred             HHHHHHHHHHHHHHhhhhc---ccCCCCCccccccc-ccCCCCCc-cchhHHHHHHHHHHHHHhhhchhh-hHHHHhhcc
Q 006712          142 FTTIYLAGLTGITLCATMK---VFMPNQDNCDRISQ-LLGSCEPA-KSWQMLYLYTVLYITGFGAAGIRP-CVSSFGADQ  215 (634)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~-~~~~~~ad~  215 (634)
                      ....+.....+.++... |   .++|+ ..|.+.+. ...+.++. .-.+.|.+.+.-++.-+-.....+ .-..+..|.
T Consensus        95 ~~~~F~~fF~~f~~vly-P~~~~lhp~-~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i  172 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLY-PNRDILHPD-AFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI  172 (491)
T ss_pred             HHHHHHHHHHHHHHHHh-hchhhcCCC-HHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87777776666665422 2   12221 01110000 00000000 000001111111111122222222 357788999


Q ss_pred             CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       216 ~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                      ++.++      -.+.+++++.+.|+|..++..+..++.+
T Consensus       173 tt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  173 TTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998      8899999999999999999988888776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.15  E-value=0.11  Score=53.10  Aligned_cols=94  Identities=14%  Similarity=0.102  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCC
Q 006712          501 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI  580 (634)
Q Consensus       501 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~  580 (634)
                      +.|+.-..|+++..-..+..+....-+.+....+.-|...|++++..-+-..+   +.-++.+..+         +.=++
T Consensus       325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsi---lT~iVvd~~g---------~~L~i  392 (433)
T KOG3810|consen  325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSI---LTLIVVDDRG---------LGLDI  392 (433)
T ss_pred             ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHh---heEEEEcccc---------cCCCc
Confidence            56777888999988888888888888887777888888888887654333332   3333333211         11011


Q ss_pred             cc--chhhHHHHHHHHHHHHHHHHHHHh
Q 006712          581 NT--GRFDYLYWLLAVLSVINFCAFLYS  606 (634)
Q Consensus       581 ~~--~~~~~~f~~~a~~~~v~~~~~~~~  606 (634)
                      ..  .-+..+|.+++++.++.....+..
T Consensus       393 r~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  393 RTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             ceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            10  012346788888888776654433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.89  E-value=0.045  Score=58.04  Aligned_cols=166  Identities=14%  Similarity=0.048  Sum_probs=113.2

Q ss_pred             HHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCC
Q 006712          374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA  453 (634)
Q Consensus       374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~  453 (634)
                      .++....+.+...+.|....++.+.+.++ .+....      ..+....+.++..++.+|+.+...||...|..+||   
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk------~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR---  102 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHK------WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR---  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcc------cccccccccccccceeccccccccccccccccccc---
Confidence            34444444455566677666666655543 344332      35566777889999999999999999988876543   


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          454 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT-AMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP  532 (634)
Q Consensus       454 ~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P  532 (634)
                         ..+.++.+...+++++.++.......      +-|++.. ..+ ......++.+.++=++.-+...+.=++..+..-
T Consensus       103 ---PfI~~~s~~i~~~l~Lig~aaDig~~------lgd~~~~~~~~-rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~  172 (498)
T KOG0637|consen  103 ---PFILAGSLLIAVSLFLIGYAADIGLL------LGDNERKPVKP-RAIVLFILGFWLLDVANNTLQGPCRALLADLAR  172 (498)
T ss_pred             ---chHHHhhHHHHHHHhhhhhHhhhhHH------hcCCcccccch-HHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhcc
Confidence               44778888888888877655422111      1111111 111 234455666777778888889999999999977


Q ss_pred             hhhHHH-HHHHHHHHhHHHHHHHHHHHH
Q 006712          533 DAMKSI-GSAYAALAGGLGCFAASILNS  559 (634)
Q Consensus       533 ~~~rg~-~~g~~~~~~~ig~~lg~~l~~  559 (634)
                      ...+-+ +++.+.+...+|+.+|-.+.+
T Consensus       173 ~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  173 GDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             ChhhhhccchhHHHHHHhcceeeeeccc
Confidence            777777 999999999999999987765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.71  E-value=0.31  Score=52.59  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006712          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (634)
Q Consensus       185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~  250 (634)
                      .+.++++.+.+++++|.=+..|...++++.+.|++-      .+..++.|.++...|..++..+.+
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecc
Confidence            578899999999999999999999999999999987      888899999888888887776665

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.69  E-value=0.15  Score=55.55  Aligned_cols=136  Identities=16%  Similarity=0.140  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHH
Q 006712          430 LILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQY  509 (634)
Q Consensus       430 l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~  509 (634)
                      ..-|+++.+.|-+--+      |.+++.-+.+|.++..++.+.++.....                  . .+.......+
T Consensus        39 ~~Kp~~g~lsD~~pi~------G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------------------~-~s~~~~~~~l   93 (433)
T PF03092_consen   39 SIKPLYGLLSDSFPIF------GYRRKPYMIIGWLLGAVSALVLALLPAS------------------E-SSAAIAVVLL   93 (433)
T ss_pred             HHhhhHHhhccccccc------CCcchHHHHHHHHHHHHHHHHHHhcccc------------------c-chhhhHHHHH
Confidence            5567788888876422      1344566777877776666655544321                  0 1333444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhh
Q 006712          510 CLIGIAEVFCIVGLLEFLYEEA---PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFD  586 (634)
Q Consensus       510 ~l~g~g~~~~~~~~~~~~~~~~---P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~  586 (634)
                      .+..+|.++......+...|..   |.+ +|...+..+.++.+|+.++..+.|.+.+..+                  .+
T Consensus        94 ~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~------------------~~  154 (433)
T PF03092_consen   94 FLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG------------------PQ  154 (433)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC------------------Ce
Confidence            6677888888887777777764   444 8889999999999999999999887765322                  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc
Q 006712          587 YLYWLLAVLSVINFCAFLYSAYR  609 (634)
Q Consensus       587 ~~f~~~a~~~~v~~~~~~~~~~~  609 (634)
                      ..|.+.+++..+..+..+++..+
T Consensus       155 ~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  155 GVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             EEehHHHHHHHHHHHHHHHhhhh
Confidence            33566666666665555555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.42  E-value=0.08  Score=56.28  Aligned_cols=124  Identities=13%  Similarity=0.117  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---
Q 006712          458 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA---  534 (634)
Q Consensus       458 ~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~---  534 (634)
                      -+.+|.++..+|.+++.+......   ..+          . .+...+.+...++++|.++.-|....+..++.+++   
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~~---~~~----------~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~   68 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPPS---LPS----------G-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS   68 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSSS---C-----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcch---hhh----------h-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence            367888888888887655431100   000          1 24456677788899999999999999999999876   


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceec
Q 006712          535 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR  613 (634)
Q Consensus       535 ~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~  613 (634)
                      .|..+..+++...++|+.++..+.+.+.+..        +|          ...|++.++..+++.+.++.-.++++++
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~--------~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY--------GW----------FLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS---------H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhcccc--------ch----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            5667778889999999999998888776522        23          5667777777777777776665666554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=1.6  Score=47.26  Aligned_cols=114  Identities=20%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHHHHHHHhhhhcc-cCCCCCcccccccccCCCCCccchhHHHHH
Q 006712          115 LGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLY  191 (634)
Q Consensus       115 ~~~~~~~~l~~G~lsDr~--~GRr~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (634)
                      ..+..++.++.+.+++|.  +||++++.++..+..++.++.-++...-. +.|           +...+...+++.....
T Consensus       289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~-----------t~~~~~~~~~~~~~~~  357 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRP-----------TDSPPLLFTPSYYLAL  357 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCC-----------CcccccccccchhHHH
Confidence            344445566677777664  49999999999999888877776532100 111           1112222334444445


Q ss_pred             HHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 006712          192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (634)
Q Consensus       192 ~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p  246 (634)
                      +.-++.|++-+........++++.+| ++      |..+++++.+-..++..++-
T Consensus       358 ii~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  358 IIGFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHh
Confidence            55578999999999999999999994 45      78888887666666555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.09  E-value=0.22  Score=52.86  Aligned_cols=63  Identities=8%  Similarity=0.060  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006712          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (634)
Q Consensus       185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~  253 (634)
                      ++.+..++..+..|+..|....+....+.|..++++      |...++...++-++|..++.+++-++.
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            456667777788999999999999999999998888      999999999999999988887776654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.63  E-value=1.3  Score=47.78  Aligned_cols=136  Identities=9%  Similarity=-0.111  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 006712           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (634)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (634)
                      .-..+..|+..+ |++....+..=+.-.+....+..+..++-+|+ |--|+=+++.....+...++..+...+...    
T Consensus       277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~----  350 (432)
T PF06963_consen  277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSP----  350 (432)
T ss_pred             CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence            334577888877 99999999999999999999999999999998 999999999888877777666553221100    


Q ss_pred             cccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 006712          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (634)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~  247 (634)
                                    ....+...++.+..+-=+|-=++--+..-++-|..|+++      |+...+.-+...++.-.+-..
T Consensus       351 --------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  351 --------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             --------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHH
Confidence                          011344444444444445555556777888889999888      999999988777777766654


Q ss_pred             HH
Q 006712          248 LV  249 (634)
Q Consensus       248 i~  249 (634)
                      ++
T Consensus       411 ~~  412 (432)
T PF06963_consen  411 LT  412 (432)
T ss_pred             HH
Confidence            43

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.22  E-value=1.2  Score=40.89  Aligned_cols=62  Identities=10%  Similarity=0.020  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006712          501 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  562 (634)
Q Consensus       501 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~  562 (634)
                      +.+.+++.-++.|+|.++..+..-.++.+...++.+++..+++....+.+..+|.++.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999999999999998888887766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.58  E-value=15  Score=38.36  Aligned_cols=109  Identities=16%  Similarity=0.081  Sum_probs=62.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCC
Q 006712          418 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM  497 (634)
Q Consensus       418 ~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (634)
                      +.+...-.+...++.++.+.+.|+++||..           ..+-.++.+++.    +....                  
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-----------cl~~cily~~sc----l~k~~------------------  118 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKKA-----------CLLFCILYSLSC----LTKHS------------------  118 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHH-----------HHHHHHHHHHHH----HHHhc------------------
Confidence            344555567778899999999999998842           222222222222    22110                  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcchhhHHHHHHHHH-HHhHHHHHHHHHHHHHh
Q 006712          498 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY-----EEAPDAMKSIGSAYAA-LAGGLGCFAASILNSII  561 (634)
Q Consensus       498 ~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~-----~~~P~~~rg~~~g~~~-~~~~ig~~lg~~l~~~v  561 (634)
                      +  +...+++.-++.|++..+.....-+...     +.+|++..+...+... +.+.+-..++..+...+
T Consensus       119 ~--~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  119 S--NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            2  4667778888899988888876655544     3456665555544444 22333333334343333

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=92.31  E-value=1.5  Score=44.86  Aligned_cols=119  Identities=17%  Similarity=0.095  Sum_probs=69.5

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 006712           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (634)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~  143 (634)
                      .++.-|.++++...-++...+|- -.-++......++|.    .++.  ..........++.+.+-.++ |-|.++.++.
T Consensus        24 ~~~~~knv~i~s~~fl~~f~a~~-gl~nlq~~vn~~lg~----~sl~--~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav   95 (390)
T KOG3097|consen   24 RLGILKNVLILSIAFLLTFTAYL-GLQNLQTSVNYDLGT----VSLG--ALYLSLIDSSMFMPLLIRFL-GTKWTMVLAV   95 (390)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhcCccc----chhh--hhhHHHHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence            34444566666666555555553 334555544443332    2211  11223334445555666665 9999998887


Q ss_pred             HHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCC
Q 006712          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (634)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (634)
                      ..+...     .++..                        .+.+..++.+-...|++.+..+..-.++++++-...
T Consensus        96 ~~Y~ly-----iA~Nl------------------------~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen   96 FPYALY-----IAANL------------------------EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             HHHHHH-----HHhhc------------------------chhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence            655432     22111                        046677787888999999999988888887765543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.24  E-value=19  Score=39.40  Aligned_cols=58  Identities=7%  Similarity=-0.023  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 006712          506 LIQYCLIGIAEVFCI-VGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  563 (634)
Q Consensus       506 v~~~~l~g~g~~~~~-~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~  563 (634)
                      ...|+...+-..++. -..+.++.|....++..+.-++..+..++|..+|+.+...+.+
T Consensus       132 ~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       132 ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444 3789999999999999999999999999999999988877653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=90.98  E-value=27  Score=38.04  Aligned_cols=166  Identities=10%  Similarity=0.029  Sum_probs=103.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChhHHHHHHHHHHH-HHHHHHHHHHHHhhhccchhHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAI  141 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~~~~~~~~~~~-~~~~~~l~~G~lsDr~~GRr~~i~~  141 (634)
                      .-++.++...+.-++..+.++.+..     +.+.+.   .+++....+-+.+.+ .+.+..++-+++.+++ -|.+++.+
T Consensus        24 ~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~   97 (509)
T COG3202          24 YELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYI   97 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHH
Confidence            3466677777777776666654432     344443   345556666666666 6678889999999997 99999998


Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCCCCcccccccccC---C--CCCc----------cchhHHHHHHHHHHHHHhhhchh-
Q 006712          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG---S--CEPA----------KSWQMLYLYTVLYITGFGAAGIR-  205 (634)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~----------~~~~~~~~~~~~~l~g~g~g~~~-  205 (634)
                      -+..+....+++++...     |-   |+.-||+..   .  -..|          +.++...+++.   .-+-..... 
T Consensus        98 ~~~~F~~fF~LFa~Vi~-----P~---~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~---aELWgslV~S  166 (509)
T COG3202          98 ILGFFLGFFALFAFVIY-----PY---KDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIM---AELWGSLVLS  166 (509)
T ss_pred             HHHHHHHHHHHHHHHHh-----cc---ccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHH---HHHHHHHHHH
Confidence            88888888888877633     11   111222210   0  0001          01122222221   111112222 


Q ss_pred             hhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006712          206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (634)
Q Consensus       206 ~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~  254 (634)
                      -.-..+..|++..++      -.|++++++...|++..++..+..++..
T Consensus       167 ~lFw~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         167 LLFWQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            245567789998888      8899999999999999999888888765

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=90.96  E-value=14  Score=39.60  Aligned_cols=62  Identities=19%  Similarity=0.281  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 006712          501 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS  563 (634)
Q Consensus       501 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~  563 (634)
                      +..++-+.-++.|++... -....+|++..+|++.--++.+......-+|.+++..++.++..
T Consensus        93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556665566666766655 55678999999999999999999999999999999988887765

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.37  E-value=3.3  Score=44.96  Aligned_cols=57  Identities=14%  Similarity=0.195  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 006712          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (634)
Q Consensus       186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i  248 (634)
                      +.+..++..++.|+..|-.......+..+..++++      |..+-.+..++.++|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667789999999999999999999888776      7777777777778877777654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.88  E-value=39  Score=36.75  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006712          501 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI  560 (634)
Q Consensus       501 s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~  560 (634)
                      +.++.++..+++|+..+........+..+..+++.|..+..++.+.-.+|-.+|+.+.-.
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556667888999999999999999999999999999999999999999988877543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=88.31  E-value=44  Score=36.65  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 006712          504 WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK  562 (634)
Q Consensus       504 ~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~  562 (634)
                      .++..+++..+.....+....+|-.+++.+..-|++|.+.|...++|+.--..++-.+.
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lV  465 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLV  465 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHh
Confidence            35677888888899999999999999999999999999999999999877665555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=86.40  E-value=6.5  Score=39.17  Aligned_cols=139  Identities=12%  Similarity=0.064  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchhH---HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcc
Q 006712          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYW---TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK  183 (634)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (634)
                      -|.+.+.|+++..+++-+...+..|-  |.+   .+.+..++......+..+. .  ...|.                  
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~Lpilt-~--~vsP~------------------  340 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALLLPILT-S--SVSPS------------------  340 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHHHHHHH-h--ccCCC------------------
Confidence            37778888887777776666665542  222   2333332222222221111 1  01121                  


Q ss_pred             chhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Q 006712          184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  263 (634)
Q Consensus       184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~  263 (634)
                      +.++..-+++..+.-.+.|.++|.+.-+-.+..|++.      |.+.++++..-.|+..-++-...-.-....+-|..|.
T Consensus       341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~  414 (454)
T KOG4332|consen  341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG  414 (454)
T ss_pred             cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence            1334444666677778889999999999999999988      9999999998888755433211100011234567788


Q ss_pred             HHHHHHHHHHH
Q 006712          264 ALAIAMGISNM  274 (634)
Q Consensus       264 ~~~~~~~i~~~  274 (634)
                      ++.+...++.+
T Consensus       415 icS~~~~~a~i  425 (454)
T KOG4332|consen  415 ICSAFLFVASI  425 (454)
T ss_pred             hhHHHHHHHHH
Confidence            77776655544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=85.33  E-value=8.4  Score=38.01  Aligned_cols=62  Identities=23%  Similarity=0.249  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHH-HhHHHHHHHHHHHHHhhc
Q 006712          502 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAAL-AGGLGCFAASILNSIIKS  563 (634)
Q Consensus       502 ~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~ig~~lg~~l~~~v~~  563 (634)
                      .+.++....+.|++.+...+....++.+..|+ +.|+...+.... ...++..+++.+.+.+..
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555668889999999999999999998 678888888887 577788888866665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	634
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-11
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		1e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 73  FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLGISQASSVLGG 126
           +I  +E  ER +++G+   +  F+   +  S       A + +  ++F+       +LGG
Sbjct: 16  YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186
           ++AD + G+Y TI   + IY  G       A + +F  +                     
Sbjct: 76  WIADRFFGKYNTILWLSLIYCVG------HAFLAIFEHSVQG------------------ 111
Query: 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246
               YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A 
Sbjct: 112 ---FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFAS 165
Query: 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 288
             +  +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M+++     +H + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G     A+F    L  L  I L                 S L GS          
Sbjct: 78  ADRIIGA--RPAVFWGGVLIMLGHIVLALPFGA-----------SALFGSI--------- 115
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
               +L I G G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 116 ----ILIIIGTGF--LKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
           V   Q   G+  AF   AI M I  ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	634
2xut_A	524	Proton/peptide symporter family protein; transport	1e-116
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  356 bits (915), Expect = e-116
 Identities = 111/573 (19%), Positives = 210/573 (36%), Gaps = 72/573 (12%)

Query: 64  KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
               W   + +I  +E  ER +++G+   +  F+   +  S       A + +  ++F+ 
Sbjct: 6   DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
                 +LGG++AD + G+Y TI   + IY  G   + +                     
Sbjct: 66  GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
                     +   YT L++   G+ GI+P VSSF  DQFD+     K+   + F+ FY 
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           ++  G+  A   +  +    G   AFG   + M ++ + F++G   Y H  P        
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
             V+ +A   +     +  L  +  + G  SA      I        L  A       + 
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273

Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
               +      K      V+ V++++R++ + A       +  +  +  + QA  M   +
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---V 330

Query: 411 GKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSV 470
                    M     L + L++        P   R+       + L+++G G+A++ LS 
Sbjct: 331 KPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSW 387

Query: 471 IWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE 530
           I  G  +      +               LS +W ++ Y L+   EV      LEF Y +
Sbjct: 388 IVVGTIQLMMDGGSA--------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433

Query: 531 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 590
           AP AMK    ++  L+  +G     + N  +KS T          +   ++   F   ++
Sbjct: 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF 488

Query: 591 LLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYE 623
             A  +++    F   A  Y+ +   +     E
Sbjct: 489 --AGFAILAAIVFALYARSYQMQDHYRQATGSE 519

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M++++       + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G    +     + + G   +                            A  +   
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109

Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            L+  + +   G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
           V   Q   G+  AF   AI M I  ++++ G      
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 8e-08
 Identities = 93/636 (14%), Positives = 170/636 (26%), Gaps = 227/636 (35%)

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           K + D+ K+        I   E  + +     +V+    +F+ +          V  F+ 
Sbjct: 36  KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84

Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
                 VL     FL           ++ T +Y+       L    +VF     N  R  
Sbjct: 85  -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135

Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
               + Q L    PAK         ++  + G G    A                +    
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173

Query: 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
           YK      F  F+L++                     +      + + +   L +   P 
Sbjct: 174 YKVQCKMDFKIFWLNL--------------------KNCNSPETV-LEMLQKLLYQIDPN 212

Query: 283 YRHRLPGGSPLTRVAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
           +  R    S +      + A  R+  +   + +  L+                       
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----------------------- 249

Query: 341 FRCLDKAALELKEDVINPSPWKL----CTVTQVEEVKTLV--RLVPIPACTIMLNVILTE 394
              L         +V N   W      C        K L+  R              +T+
Sbjct: 250 ---LL--------NVQNAKAWNAFNLSC--------KILLTTR-----------FKQVTD 279

Query: 395 FLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFL-ILSLYYSTFVPLCRRI-TGHPRG 452
           FL+ +     +++ H   L             S+ L  L         L R + T +P  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV-------KSLLLKYLDCRPQD---LPREVLTTNP-- 327

Query: 453 ASQLQRVGIGLAVSILSVIWAGI------FERYRR------NYAISHGYE---------- 490
                       +SI   I   I      ++ ++          I               
Sbjct: 328 ----------RRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 491 FSFLTAMPD--------LSAYWL-LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSA 541
           F  L+  P         LS  W  +I+  ++ +        L+E   ++  ++  SI S 
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE---KQPKESTISIPSI 431

Query: 542 YAALAGGLGCFAASILN------SIIKSVTGNPKKGQPNWLAQNINTGRFD-YLYWLLAV 594
           Y  L          + N      SI+     N  K   +    ++     D Y Y  +  
Sbjct: 432 YLEL-------KVKLENEYALHRSIVDHY--NIPKTFDSD---DLIPPYLDQYFYSHIGH 479

Query: 595 -LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKL 629
            L  I       + +R  +        D+  +E K+
Sbjct: 480 HLKNIEH-PERMTLFRMVFL-------DFRFLEQKI 507

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	634
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.98
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.48
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.37
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.14
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.86
2xut_A	524	Proton/peptide symporter family protein; transport	98.44

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=7.9e-31  Score=287.65  Aligned_cols=451  Identities=19%  Similarity=0.223  Sum_probs=305.5

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchhH
Q 006712           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYW  137 (634)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr-~~GRr~  137 (634)
                      .+++++.++.+.+..++..+++|++..+++.|++++     +|.+..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~   86 (491)
T 4aps_A            8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP   86 (491)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence            345677889999999999999999999999999998     99999999999999999999999999999999 7 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCC
Q 006712          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (634)
Q Consensus       138 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~  217 (634)
                      ++.++.++..++.++++++                            .+.+.++++|+++|++.+...+...++++|++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  138 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYD  138 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence            9999999999998888775                            567889999999999999999999999999999


Q ss_pred             CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccC---CC-CCCcH
Q 006712          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR---LP-GGSPL  293 (634)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~-~~~~~  293 (634)
                      +++.+    |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...++...+   ++ +....
T Consensus       139 ~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (491)
T 4aps_A          139 EHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP  214 (491)
T ss_dssp             SCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH
T ss_pred             ccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcccc
Confidence            88733    777888899999999999999999999999999999998877666666555443332211   11 11111


Q ss_pred             HHHHHHHHH--------HHhhhcccccccccccccccCCCccccCCCcccccCCc-chHHHHHHhhhccccCCCCCCccc
Q 006712          294 TRVAQVLVA--------AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD-FRCLDKAALELKEDVINPSPWKLC  364 (634)
Q Consensus       294 ~~~~~v~~~--------a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~  364 (634)
                      .+..+....        +.....          +...++.        ..++... ..............    ..|+..
T Consensus       215 ~~~~~~~~~~g~~l~~~~~~~~~----------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  272 (491)
T 4aps_A          215 EEVKPLLVKVSLAVAGFIAIIVV----------MNLVGWN--------SLPAYINLLTIVAIAIPVFYFA----WMISSV  272 (491)
T ss_dssp             HHHHHHHHHCCCCCHHHHHHHHH----------HHHHSSC--------CTTHHHHHHHHHHHHHHHHHHH----HHC---
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH----------HHhccCc--------ccccchhhhhHHHHHHHHHHHH----HHhhcc
Confidence            111110000        000000          0000000        0000000 00000000000000    000000


Q ss_pred             cchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhh-cccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhh
Q 006712          365 TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLC  443 (634)
Q Consensus       365 ~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  443 (634)
                      .. ...++++......+++....++..+.+..+.+..+... .+..    ....+.+..++.+..++..++.+++.||++
T Consensus       273 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  347 (491)
T 4aps_A          273 KV-TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWK  347 (491)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence            00 01233444444555566666777776666654443322 1211    134667778888888899999999999998


Q ss_pred             ccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 006712          444 RRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGL  523 (634)
Q Consensus       444 rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~  523 (634)
                      ||.      ......+.+|.++.+++++++.......       +      ...+ .+.+++++.+++.++++++..+..
T Consensus       348 ~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~  407 (491)
T 4aps_A          348 KNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGK-VSPLWLVGSWALVILGEMLISPVG  407 (491)
T ss_dssp             TC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTT-CCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred             ccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCC-ccHHHHHHHHHHHHHHHHHHhHHH
Confidence            873      3455667788888888887766554220       0      0001 366778888899999999999999


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHH
Q 006712          524 LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF  603 (634)
Q Consensus       524 ~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~  603 (634)
                      ++++.+.+|++.||.++|+.++..++|+.+++.+.+.+.+..                   +...|+++++++++..++.
T Consensus       408 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          408 LSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS-------------------EVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS-------------------TTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988765421                   2356777888888777777


Q ss_pred             HHhhccceec
Q 006712          604 LYSAYRYKYR  613 (634)
Q Consensus       604 ~~~~~~~~~~  613 (634)
                      +++.++.+++
T Consensus       469 ~~~~~~~~~~  478 (491)
T 4aps_A          469 VFLSKRIQGL  478 (491)
T ss_dssp             HHC-------
T ss_pred             HHHHHHHHHH
Confidence            7776655543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.98  E-value=9.3e-32  Score=297.64  Aligned_cols=482  Identities=21%  Similarity=0.335  Sum_probs=289.0

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~  140 (634)
                      +++.++.+.+..++.++++|++..+++.|+++++|      ++..+++++.+.+.++..++.+++|+++||++|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            44556778888999999999999999999999999      999999999999999999999999999999559999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCC
Q 006712          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (634)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~  219 (634)
                      ++.++..++.++++++                            . +.+.++++|+++|++.+...+...++++|++|++
T Consensus        90 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  141 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS  141 (524)
T ss_dssp             HHHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence            9999999998888876                            4 6788999999999999999999999999999998


Q ss_pred             Ccchhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHH
Q 006712          220 SKDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV  296 (634)
Q Consensus       220 ~~~~~~~r~~---~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  296 (634)
                      +      |++   .+++++.+.++|..++|.+++++.+..||++.|++.++..++..+.++...+..+.+++++++..+.
T Consensus       142 ~------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (524)
T 2xut_A          142 N------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF  215 (524)
T ss_dssp             T------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------
T ss_pred             c------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhH
Confidence            8      754   4555888999999999999999998899999999988877666665554444333322222221121


Q ss_pred             HHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHH---hhhccccCCCCCCc-------cccc
Q 006712          297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA---LELKEDVINPSPWK-------LCTV  366 (634)
Q Consensus       297 ~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~-------~~~~  366 (634)
                      .+.+..+.+++..+.+ .... +.....   .........+.+....+....   ....+ .....+|+       ....
T Consensus       216 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  289 (524)
T 2xut_A          216 LPVIRSALLTKVEGKG-NIGL-VLALIG---GVSAAYALVNIPTLGIVAGLCCAMVLVMG-FVGAGASLQLERARKSHPD  289 (524)
T ss_dssp             -----------CTTHH-HHHH-HHHHHH---HHHHHHTGGGTTTTCSSHHHHHHHHHHHH-HHHTGGGTHHHHSCCSCCS
T ss_pred             HHHHHHHHhhhhcccC-ccch-hhhhhh---hhhhhhhhcccchhhhhhhhhhhhhhhhc-ccccchhhHHhhhhccccH
Confidence            1222222221110000 0000 000000   000000000000000000000   00000 00001110       0011


Q ss_pred             hhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccc
Q 006712          367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRI  446 (634)
Q Consensus       367 ~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~  446 (634)
                      ...+++++......++.....++..+.+..+.+..+...++...  + .+.+.+..++.+..++..++.+++..+..+|.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (524)
T 2xut_A          290 AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERM  366 (524)
T ss_dssp             SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence            11123344444444444455555555565566655554443321  1 13444555555666666666665543333332


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006712          447 TGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF  526 (634)
Q Consensus       447 ~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~  526 (634)
                      .++   .+..+.+.+|+++.+++++++.......     .+        ... .+.+++++.+++.++++++..+..+++
T Consensus       367 ~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~--------~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~  429 (524)
T 2xut_A          367 GVK---LTALRKMGAGIAITGLSWIVVGTIQLMM-----DG--------GSA-LSIFWQILPYALLTFGEVLVSATGLEF  429 (524)
T ss_dssp             -------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----TT--------TCC-CCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----cC--------CCC-cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211   4556667788888888776655432100     00        001 356777888999999999999999999


Q ss_pred             HHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCCCCcccc-CCccchhhHHHHHHHHHHHHHHHHHHH
Q 006712          527 LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLY  605 (634)
Q Consensus       527 ~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~~~~v~~~~~~~  605 (634)
                      +.+.+|++.||+++|++++..++|+.+++.+.+.+.+.++      .+|... +.+.  ..+.|++.+++++++.+++++
T Consensus       430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  501 (524)
T 2xut_A          430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFAL  501 (524)
T ss_dssp             HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccccccccccc--cccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998765221      123211 0111  123377788888888888777


Q ss_pred             hhccceecccc
Q 006712          606 SAYRYKYRSEQ  616 (634)
Q Consensus       606 ~~~~~~~~~~~  616 (634)
                      +.+++++++.+
T Consensus       502 ~~~~~~~~~~~  512 (524)
T 2xut_A          502 YARSYQMQDHY  512 (524)
T ss_dssp             -----------
T ss_pred             HHHHhccchhh
Confidence            77776655443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=6.3e-30  Score=280.32  Aligned_cols=421  Identities=14%  Similarity=0.067  Sum_probs=248.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCcc
Q 006712          104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK  183 (634)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (634)
                      ..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++............          -...-
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~----------~~~~~  122 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNT----------VPVYL  122 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSS----------CCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhH----------HHHHH
Confidence            45678899999999999999999999998 99999999999999999999864211100000000          00001


Q ss_pred             chhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 006712          184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------  255 (634)
Q Consensus       184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~--------  255 (634)
                      ..+..+++++|+++|+|.|+..+..+++++|..|++.      |++..++++.+..+|..+++.++..+...        
T Consensus       123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  196 (491)
T 4gc0_A          123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT  196 (491)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence            1678999999999999999999999999999999999      99999999999999999998877666432        


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCccc
Q 006712          256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKI  335 (634)
Q Consensus       256 ~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~  335 (634)
                      .+|++.+.+..+..++.++..+.                                .||+|+| +..+++.+++.+..++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~-L~~~~~~~~a~~~l~~~  243 (491)
T 4gc0_A          197 DGWRYMFASECIPALLFLMLLYT--------------------------------VPESPRW-LMSRGKQEQAEGILRKI  243 (491)
T ss_dssp             THHHHHHHTTHHHHHHHHHHGGG--------------------------------SCCCHHH-HHHTTCHHHHHHHHHHH
T ss_pred             hhhHHHhhhhhhhhhhhhhhhhc--------------------------------CCCChHH-HHHcCchhHHHHhHHHh
Confidence            23666555544443333322211                                4666666 55544443332222211


Q ss_pred             ccCCcch--HHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhH-HHHHHHHHHHHHhhhhHHHHHHhhcccCCCC
Q 006712          336 AHTDDFR--CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPI-PACTIMLNVILTEFLTLSVQQAYTMNTHMGK  412 (634)
Q Consensus       336 ~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (634)
                      ...+...  ..+.........  +....     ......++....... ++.+.........+.+ ...+..+.+     
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----  310 (491)
T 4gc0_A          244 MGNTLATQAVQEIKHSLDHGR--KTGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAP-EVFKTLGAS-----  310 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHSSCC-----
T ss_pred             cCCchhHHHHHHHHHHHHhhh--hhhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcch-HHHHhcCCC-----
Confidence            1110000  000000000000  00000     000001111111111 1111111111111111 111111111     


Q ss_pred             ccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccc
Q 006712          413 LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFS  492 (634)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (634)
                       .........+..+..++...+..++.||++||.           .+..+...++++++.++.....             
T Consensus       311 -~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~-------------  365 (491)
T 4gc0_A          311 -TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT-------------  365 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred             -ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc-------------
Confidence             111222344455666677778888999998884           3566777777776665544321             


Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccCCCCCCC
Q 006712          493 FLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQ  572 (634)
Q Consensus       493 ~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~  572 (634)
                         . . .+...++..+++.........+..+.+..|.+|.+.|++++|+.+..+++++++++.+.+.+.+..       
T Consensus       366 ---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------  433 (491)
T 4gc0_A          366 ---Q-A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------  433 (491)
T ss_dssp             ---T-C-CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------
T ss_pred             ---c-c-chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence               0 1 122223322332333333345677889999999999999999999999999999999888764311       


Q ss_pred             CCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccceeccccCCCCchhhhhhcc
Q 006712          573 PNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKL  629 (634)
Q Consensus       573 ~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (634)
                        |..   ...+....|+++++++++..++.+++.+|+|+|++||+++.++++..+.
T Consensus       434 --~~~---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~  485 (491)
T 4gc0_A          434 --WLV---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKT  485 (491)
T ss_dssp             --HHH---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC------
T ss_pred             --HHH---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCccc
Confidence              100   0001235688899999999999999999999999999888887654443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=8.8e-28  Score=259.81  Aligned_cols=403  Identities=12%  Similarity=0.006  Sum_probs=262.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      .+|+.++...+..+...+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~  101 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence            4466677777777777776665555555 445567 9999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHH----hhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCc
Q 006712          146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (634)
Q Consensus       146 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~  221 (634)
                      ..++.+++++    +                            .+.+.++++|+++|++.+...+...++++|.+|+++ 
T Consensus       102 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-  152 (451)
T 1pw4_A          102 AAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-  152 (451)
T ss_dssp             HHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred             HHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence            9999999888    5                            567789999999999999999999999999999988 


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHH
Q 006712          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL  300 (634)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  300 (634)
                           |++.+++++.+.++|..++|.+++++.+..| |++.|++.++..++..++.+...++.+.+....+         
T Consensus       153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  218 (451)
T 1pw4_A          153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---------  218 (451)
T ss_dssp             -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---------
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---------
Confidence                 9999999999999999999999999888888 9999999887766655554444333211110000         


Q ss_pred             HHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhh
Q 006712          301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVP  380 (634)
Q Consensus       301 ~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~  380 (634)
                                   .+++   +....+       .....                ..+...++.....+....+.+.... 
T Consensus       219 -------------~~~~---~~~~~~-------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~-  258 (451)
T 1pw4_A          219 -------------IEEY---KNDYPD-------DYNEK----------------AEQELTAKQIFMQYVLPNKLLWYIA-  258 (451)
T ss_dssp             -------------CTTT---CCC------------------------------------CCTHHHHHHTSSCHHHHHHH-
T ss_pred             -------------hhhh---cccccc-------cchhh----------------hhcccccccchHHHHHcCHHHHHHH-
Confidence                         0000   000000       00000                0000000000000000011221111 


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhh--hccccCCCCCCChhHH
Q 006712          381 IPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPL--CRRITGHPRGASQLQR  458 (634)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~rr~~~~~~~~~~~~~  458 (634)
                        +.....+..+......+..+   +....+.-....+.+.....+..++..++.+++.||+  .+|.           .
T Consensus       259 --~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----------~  322 (451)
T 1pw4_A          259 --IANVFVYLLRYGILDWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----------A  322 (451)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH---BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----------H
T ss_pred             --HHHHHHHHHHHHHHHHHHHH---HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----------h
Confidence              11111111111111222211   1111110011223445555666777788888888887  5552           2


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 006712          459 VGIGLAVSI-LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS  537 (634)
Q Consensus       459 i~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  537 (634)
                      +.++.++.. ++++++....                    . .+.+.+....++.|++.....+....++.+.+|++.||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g  381 (451)
T 1pw4_A          323 TGVFFMTLVTIATIVYWMNP--------------------A-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG  381 (451)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC--------------------T-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc--------------------c-cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh
Confidence            444444433 4443332211                    0 24555666677788888888888899999999999999


Q ss_pred             HHHHHHHHHhHH-HHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 006712          538 IGSAYAALAGGL-GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR  609 (634)
Q Consensus       538 ~~~g~~~~~~~i-g~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~  609 (634)
                      +++|+.+...++ |..+++.+.+.+.+..+                  +...|++.+++.+++.++.++..++
T Consensus       382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~~~~  436 (451)
T 1pw4_A          382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFG------------------WDGGFMVMIGGSILAVILLIVVMIG  436 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSC------------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999 99999999998876432                  3466777777777777766655443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=4.9e-25  Score=237.45  Aligned_cols=357  Identities=8%  Similarity=-0.042  Sum_probs=241.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 006712           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (634)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~  144 (634)
                      +++++.++.+.+..+...+....+... ..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            455666777777777777766544444 5557889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHH---HHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCc
Q 006712          145 IYLAGLTGI---TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (634)
Q Consensus       145 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~  221 (634)
                      +..++.+++   ..+                            .+.+.++++|++.|++.+...+...++++|.+|+++ 
T Consensus       100 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~-  150 (438)
T 3o7q_A          100 LYALGAALFWPAAEI----------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS-  150 (438)
T ss_dssp             HHHHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-
T ss_pred             HHHHHHHHHHhcccc----------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh-
Confidence            999999888   443                            578899999999999999999999999999999999 


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHHHHHH
Q 006712          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNML  275 (634)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~lg~~~~p~i~~~l~-~~~g-------------------------w~~~f~~~~~~~~i~~~~  275 (634)
                           |++.+++++.+.++|..++|.+++++. +..+                         |++.|++.++..++..++
T Consensus       151 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  225 (438)
T 3o7q_A          151 -----GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL  225 (438)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                 999999999999999999999999988 5444                         999998766655544444


Q ss_pred             HHHhc-cccccCCCCCCcHHHHHHHHHHHHhhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccc
Q 006712          276 FFIGT-PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED  354 (634)
Q Consensus       276 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  354 (634)
                      ++..+ ++.+.+++++                                   +           ++. +..+....     
T Consensus       226 ~~~~~~p~~~~~~~~~-----------------------------------~-----------~~~-~~~~~~~~-----  253 (438)
T 3o7q_A          226 IMLTKFPALQSDNHSD-----------------------------------A-----------KQG-SFSASLSR-----  253 (438)
T ss_dssp             HHHCCCCCCTTTCCCC-----------------------------------S-----------STT-SHHHHHHH-----
T ss_pred             HHHHcCCccccccccc-----------------------------------c-----------ccc-chhhhHHH-----
Confidence            33321 1100000000                                   0           000 00000000     


Q ss_pred             cCCCCCCccccchhhhHHHHHHhHhhHHHHHHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHH
Q 006712          355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSL  434 (634)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  434 (634)
                               ..    ++++.....+..++..........+.+.++..+..+.+.      ...+.+..+..+..++..++
T Consensus       254 ---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~  314 (438)
T 3o7q_A          254 ---------LA----RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFT  314 (438)
T ss_dssp             ---------HT----TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------HH----hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHH
Confidence                     00    001111111111111111111212221221222112221      12334455556667777888


Q ss_pred             HHHHHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHH
Q 006712          435 YYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGI  514 (634)
Q Consensus       435 ~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~  514 (634)
                      .+++.||+.||.           .+.++.++.+++++++....                       + .+.+..+++.++
T Consensus       315 ~g~l~~r~~~~~-----------~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~g~  359 (438)
T 3o7q_A          315 GTWLISRFAPHK-----------VLAAYALIAMALCLISAFAG-----------------------G-HVGLIALTLCSA  359 (438)
T ss_dssp             HHHHHHHSCHHH-----------HHHHHHHHHHHHHHHHHHCC-----------------------H-HHHHHHHHHHHH
T ss_pred             HHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHcC-----------------------C-cHHHHHHHHHHH
Confidence            888888877663           35666666666655443321                       2 233444577788


Q ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc
Q 006712          515 AEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT  565 (634)
Q Consensus       515 g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~lg~~l~~~v~~~~  565 (634)
                      +.+...+...++..+..|++ ++.+.++.. ...+|+.+++.+.+.+.+..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          360 FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            88888999999999999977 999999888 67799999999999887743

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=2.7e-23  Score=219.42  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 006712           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (634)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~  151 (634)
                      +.+.+..++..+......+.++. +.+++|.+.++.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            44555666666666555555554 5678999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHH
Q 006712          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (634)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~  231 (634)
                      ++.++                            .+.+.+++.|++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  126 (375)
T 2gfp_A           81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN  126 (375)
T ss_dssp             HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred             HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence            88886                            678899999999999999999999999999999998      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 006712          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (634)
Q Consensus       232 ~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~  274 (634)
                      ++++.+.++|..++|.+++++.+..+|++.|++.++..++..+
T Consensus       127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888999999887766544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=6.6e-23  Score=220.23  Aligned_cols=394  Identities=11%  Similarity=-0.033  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ..+......++..+++..+.++++.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence            456666666666677777778999999999999999999999999999999999999999998 9999999988876553


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      ...+......                         ... ..++.++++.+++.+...+...+...+..++..    ..|+
T Consensus        87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~  137 (417)
T 2cfq_A           87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN  137 (417)
T ss_dssp             HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred             HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence            3222111000                         000 012233444444433333333333333332211    0156


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhc
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH  308 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~  308 (634)
                      ..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+...++    +++..                 
T Consensus       138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~-----------------  195 (417)
T 2cfq_A          138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSA-----------------  195 (417)
T ss_dssp             CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSS-----------------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----ccccc-----------------
Confidence            66677777788999999999999876 589999887655433322221111111    00000                 


Q ss_pred             ccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHH
Q 006712          309 AAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML  388 (634)
Q Consensus       309 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~  388 (634)
                             +  .     ++.. +     ...++.+..+....              +     .+ +.+.............
T Consensus       196 -------~--~-----~~~~-~-----~~~~~~~~~~~~~~--------------~-----~~-~~~~~~~~~~~~~~~~  235 (417)
T 2cfq_A          196 -------T--V-----ANAV-G-----ANHSAFSLKLALEL--------------F-----RQ-PKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             -------C--S-----SSSS-S-----SCCCCCCHHHHHHH--------------T-----TC-HHHHHHHHHHHHHHHH
T ss_pred             -------c--c-----cccc-c-----cccccccHHHHHHH--------------h-----cC-CchhhHHHHHHHHHHH
Confidence                   0  0     0000 0     00000000000000              0     01 1111111111111112


Q ss_pred             HHHHHhhhhHHHHHHhhcccCCCCc-cccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHH
Q 006712          389 NVILTEFLTLSVQQAYTMNTHMGKL-KLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSI  467 (634)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~  467 (634)
                      +..+.+....+....  ....  +. ....+.+..++.+..++...+.+++.||++||.           .+.++.++.+
T Consensus       236 ~~~~~~~~~~~~~~~--~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~  300 (417)
T 2cfq_A          236 YDVFDQQFANFFTSF--FATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHT--SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHH
Confidence            222222222222111  1100  00 001123344455556667778888889888773           2555666665


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH-HHHH
Q 006712          468 LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALA  546 (634)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~  546 (634)
                      ++++.+...                       .+.+.+++..++.+++.....+....+..+..|++.||++.++ ++..
T Consensus       301 ~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  357 (417)
T 2cfq_A          301 VRIIGSSFA-----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFF  357 (417)
T ss_dssp             HHHHHHTTC-----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            554433221                       1334444455556677777777788999999999999999999 4888


Q ss_pred             hHHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccce
Q 006712          547 GGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  611 (634)
Q Consensus       547 ~~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~  611 (634)
                      +++|+.+++.+.+.+.+..                  ++...|++.+++.+++.++.++..++++
T Consensus       358 ~~lg~~~gp~l~G~l~~~~------------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          358 KQLAMIFMSVLAGNMYESI------------------GFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHTHHHHTHHHHS------------------HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HhHHHHHhhhhHHHHHHhc------------------CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            8999999999999776522                  2345677778887777776666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.48  E-value=4.8e-13  Score=143.89  Aligned_cols=178  Identities=15%  Similarity=0.136  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL  147 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~-GRr~~i~~~~~~~~  147 (634)
                      +.++...+..++..+.++++..+++.|+++.+|++..++++..+.+.++..++.+++|+++||+. |||+.+.++.++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            45777888888888899999999999999889999999999999999999999999999999942 88888887776655


Q ss_pred             -HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       148 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                       ++.+++.+.       +.                   .+.+.+.+..++.|++.+...+...+++.|.+|++.      
T Consensus       332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------  379 (451)
T 1pw4_A          332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------  379 (451)
T ss_dssp             HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred             HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence             444433332       10                   255667777788999999989999999999999998      


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       227 r~~~~~~~~~~~~l-g~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      |++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus       380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 99999999999999999999999888777666665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.37  E-value=1.7e-11  Score=131.28  Aligned_cols=166  Identities=10%  Similarity=0.004  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      .++...+..++.....+++..+++.| +++.+|.+..++++..+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~  337 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA  337 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            36666667777777888888999999 8888899999999999999999999999999999998 999999999988888


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +.+++.+.                            .+... ++..++.|++.+...+...++..|.+|++       |+
T Consensus       338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~  381 (438)
T 3o7q_A          338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK  381 (438)
T ss_dssp             HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred             HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence            77766664                            23333 33447889999999999999999999854       45


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHH
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN  273 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~g-w~~~f~~~~~~~~i~~  273 (634)
                      .+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.+
T Consensus       382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            5555544 556999999999999999988 9988887665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.34  E-value=1.3e-11  Score=132.00  Aligned_cols=173  Identities=10%  Similarity=0.053  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~  147 (634)
                      ++...+..+.....++....+++.|+.+.++..   ....+...+...++..++.+++|+++||+ |||+++.++.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence            333333334444455555566788887766532   34456666677777888899999999998 99999988887777


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      ++..++++.                            .+.+.+++..++.+++.+...+....+.+|.+|++.      |
T Consensus       301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~  346 (417)
T 2cfq_A          301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S  346 (417)
T ss_dssp             HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred             HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            665554432                            344556666677788777777778899999999998      9


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Q 006712          228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (634)
Q Consensus       228 ~~~~~~-~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  278 (634)
                      +++.++ ++.+..+|..++|.++|++.+..|+...|.+.+++.+++.++.+.
T Consensus       347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            999998 577888999999999999988888888888877766666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.14  E-value=1.3e-10  Score=126.69  Aligned_cols=185  Identities=12%  Similarity=0.006  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH-----HHHHH
Q 006712           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI  145 (634)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~-----~~~~~  145 (634)
                      .+...+..++....++....+++.|+.+.++.+..+.++..+...++..++.++.|+++||+ |||+...     ++.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            44455555555666666677788999988888877888888888899999999999999998 9986554     56666


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.+++.+........+                   ..+.+.+++..++.|++.+...+...++..|.+|++.     
T Consensus       364 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-----  419 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSG-------------------KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-----  419 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCT-------------------TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred             HHHHHHHHHHHHHhcCCCC-------------------CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence            5555555544311000000                   0245667777889999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~  282 (634)
                       |+++.++++...++|..++|.+.+++.+ .++.+.|++.++..++..++.+...++
T Consensus       420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          420 -NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             -SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999988865 456667777666666655555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.05  E-value=1.7e-08  Score=109.68  Aligned_cols=184  Identities=9%  Similarity=-0.031  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 006712           71 ALFIFGNEMAER-MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (634)
Q Consensus        71 ~~~~~~~~~~~~-~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~  149 (634)
                      ........++.. .+.+.+. +...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG  355 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence            333333333333 3344443 445566677888888888777888888899999999999998 9999999998888877


Q ss_pred             HHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhh
Q 006712          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (634)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~  229 (634)
                      .+.+......   ..                    .....+....+..+....+..+....+.+|++|++.      |++
T Consensus       356 ~~~l~~~~~~---~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~  406 (491)
T 4gc0_A          356 MFSLGTAFYT---QA--------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGK  406 (491)
T ss_dssp             HHHHHHHHHT---TC--------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHH
T ss_pred             HHHHHHHHhc---cc--------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHH
Confidence            7666554220   00                    122222222222222223345777889999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 006712          230 FFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (634)
Q Consensus       230 ~~~~~~~~~~lg~~~~p~i~~~l~~------~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~  285 (634)
                      ++++.+....+|+.+++.+...+.+      ..++.+.|++.+++.+++.+..++..|+.+.
T Consensus       407 ~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          407 ALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence            9999988888988888877665533      3455667777777777776666666665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.86  E-value=1.3e-09  Score=114.04  Aligned_cols=164  Identities=12%  Similarity=-0.095  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-HH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL  147 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~-~~  147 (634)
                      +.++...+..++...+.+.+..+++.|+++.+|.+..+++...+...++..++.++.|+++||+ ||+  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            3466677777788888888888999999998999999999999999999999999999999998 872  2333322 22


Q ss_pred             HHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhh
Q 006712          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (634)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r  227 (634)
                      .+.........     +                   ..+.+.+++..++.|++.+...+...++..|.+| ++      |
T Consensus       276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~  324 (375)
T 2gfp_A          276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A  324 (375)
T ss_dssp             TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred             HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence            22221111100     0                   0355666777788999999999999999999998 66      9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 006712          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  266 (634)
Q Consensus       228 ~~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~  266 (634)
                      ++..++++...++|..++|.+.+++.+..++...+++..
T Consensus       325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999999999988777877776543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.44  E-value=1.1e-06  Score=96.03  Aligned_cols=137  Identities=12%  Similarity=0.006  Sum_probs=101.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhh-hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCccccccCC
Q 006712          418 TCMPVFPGLSIFLILSLYYSTFVPL-CRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTA  496 (634)
Q Consensus       418 ~~~~~~~~~~~~l~~~~~~~~~~~l-~rr~~~~~~~~~~~~~i~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (634)
                      +.+.....+..++..++.+++.||+ +||.           .+.++.++.+++.++..+..                   
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----------~~~~~~~~~~~~~~~~~~~~-------------------  106 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----------TILWLSLIYCVGHAFLAIFE-------------------  106 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----------HHHHHHHHHHHHHHHHHHTS-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHhc-------------------
Confidence            3445556667778888999999998 7773           36677777777766554321                   


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH---HHHHhHHHHHHHHHHHHHhhcccCCCCCCCC
Q 006712          497 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQP  573 (634)
Q Consensus       497 ~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~lg~~l~~~v~~~~~~~~~~~~  573 (634)
                         .+.+.+++..++.|++.+...+...+++.+.+|++.|+.+.++   .+...++|..+++.+.+.+.+..        
T Consensus       107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------  175 (524)
T 2xut_A          107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--------  175 (524)
T ss_dssp             ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred             ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence               1456677778889999999999999999999999999877666   88888999999998888765522        


Q ss_pred             CccccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 006712          574 NWLAQNINTGRFDYLYWLLAVLSVINFCAFLY  605 (634)
Q Consensus       574 ~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~  605 (634)
                      +|          ...|++.+++.++..+..++
T Consensus       176 g~----------~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          176 GA----------AVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             CH----------HHHHHHHHHHHHHHHHHHHS
T ss_pred             cH----------HHHHHHHHHHHHHHHHHHHH
Confidence            24          55677777666665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	634
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.31

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.4e-27  Score=251.54  Aligned_cols=412  Identities=13%  Similarity=0.014  Sum_probs=245.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 006712           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (634)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~  145 (634)
                      .+|+.+..+++..+...+.... ...+..+++ ++|+|.++.+++.+++.++..++.+++|+++||+ |||+++.++.++
T Consensus        22 ~~w~i~~~~~~~~~~~~~~~~~-~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~   98 (447)
T d1pw4a_          22 LRWQIFLGIFFGYAAYYLVRKN-FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHH
Confidence            3455444443333333332222 234445665 5899999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhh
Q 006712          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (634)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  225 (634)
                      ..++.++++++....                        .+...+++.|++.|++.|...+...++++|.+|+++     
T Consensus        99 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-----  149 (447)
T d1pw4a_          99 AAAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-----  149 (447)
T ss_dssp             HHHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-----
T ss_pred             HHHHHhhccccchhh------------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc-----
Confidence            999988887752211                        356789999999999999999999999999999999     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHH
Q 006712          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAF  304 (634)
Q Consensus       226 ~r~~~~~~~~~~~~lg~~~~p~i~~~l~~~-~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~  304 (634)
                       |++.+++++.+.++|..++|.+++.+... .+|++.|++.+...++..++.+...++.++......             
T Consensus       150 -r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  215 (447)
T d1pw4a_         150 -RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP-------------  215 (447)
T ss_dssp             -HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS-------------
T ss_pred             -ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccch-------------
Confidence             99999999999999999999988876654 479999988777666555555544433222111000             


Q ss_pred             hhhcccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHH
Q 006712          305 RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPAC  384 (634)
Q Consensus       305 ~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~  384 (634)
                               .      +..+.+...+..+..+..                   ...++ ...+.....+.+....   ..
T Consensus       216 ---------~------~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~~~---~~  257 (447)
T d1pw4a_         216 ---------I------EEYKNDYPDDYNEKAEQE-------------------LTAKQ-IFMQYVLPNKLLWYIA---IA  257 (447)
T ss_dssp             ---------C------TTTCCC--------------------------------CCTH-HHHHHTSSCHHHHHHH---HH
T ss_pred             ---------h------hhhhhhcccchhhccccc-------------------cchhh-HHHHHHHcCchHHHHH---HH
Confidence                     0      000000000000000000                   00000 0000000011111111   11


Q ss_pred             HHHHHHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHH
Q 006712          385 TIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLA  464 (634)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~  464 (634)
                      ....+.......+....+   .....+.-....+....+..+..++...+.+++.||+.|+..           ...+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~~  323 (447)
T d1pw4a_         258 NVFVYLLRYGILDWSPTY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVF  323 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHH---BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHH
T ss_pred             hhhhhhhhhcchhhhhhh---cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc-----------ccccch
Confidence            111111111111111111   111111001123344455566667777888888888876631           111111


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 006712          465 VSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA  544 (634)
Q Consensus       465 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~  544 (634)
                      +..+..+......                  .....+.+..+..+++.|++.....+....+..+.+|++.||.++|+.+
T Consensus       324 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  385 (447)
T d1pw4a_         324 FMTLVTIATIVYW------------------MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG  385 (447)
T ss_dssp             HHHHHHHHHHHTT------------------SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH------------------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            1111111111111                  0010245666666777788888888899999999999999999999999


Q ss_pred             HHhHHH-HHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhccce
Q 006712          545 LAGGLG-CFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK  611 (634)
Q Consensus       545 ~~~~ig-~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~  611 (634)
                      ...+++ ..+++.+.+.+.+..+        |          ...|++++++.+++.++.+++.++.+
T Consensus       386 ~~~~~~g~~~~~~~~g~~~~~~g--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (447)
T d1pw4a_         386 LFGYLGGSVAASAIVGYTVDFFG--------W----------DGGFMVMIGGSILAVILLIVVMIGEK  435 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSC--------S----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC--------h----------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888874 5667888888776433        3          45566666666666666555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.5e-23  Score=218.70  Aligned_cols=398  Identities=11%  Similarity=-0.053  Sum_probs=233.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 006712           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (634)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~  148 (634)
                      |..|.+.+..++..++.....+.++.|+++++|+|.++.+++.+++.++..++.+++|+++||+ ||||+++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4577788888888888877888999999999999999999999999999999999999999998 999999999988888


Q ss_pred             HHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhh
Q 006712          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (634)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~  228 (634)
                      +..++.+....+                        ......++.+.+.+.+.+...........+..+++..    .+.
T Consensus        86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  137 (417)
T d1pv7a_          86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSN  137 (417)
T ss_dssp             THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH----HHS
T ss_pred             HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchhh----hhH
Confidence            877777652100                        1111223333444444444333333333333332221    155


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCcHHHHHHHHHHHHhhhc
Q 006712          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH  308 (634)
Q Consensus       229 ~~~~~~~~~~~lg~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~  308 (634)
                      ...+........+..++|.+++++.+. +|+..+........+..++.....++.+..+++.+..               
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  201 (417)
T d1pv7a_         138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV---------------  201 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH---------------
T ss_pred             HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh---------------
Confidence            556666777788888999888888764 4555555544444444444333332221111110000               


Q ss_pred             ccccccccccccccCCCccccCCCcccccCCcchHHHHHHhhhccccCCCCCCccccchhhhHHHHHHhHhhHHHHHHHH
Q 006712          309 AAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML  388 (634)
Q Consensus       309 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~  388 (634)
                             .                   ...+.........                   .....+.. ............
T Consensus       202 -------~-------------------~~~~~~~~~~~~~-------------------~~~~~~~~-~~~~~~~~~~~~  235 (417)
T d1pv7a_         202 -------G-------------------ANHSAFSLKLALE-------------------LFRQPKLW-FLSLYVIGVSCT  235 (417)
T ss_dssp             -------H-------------------SCCCCCCHHHHHH-------------------HTTSSHHH-HHHHHHHHHHHH
T ss_pred             -------h-------------------hhccccccccccc-------------------cccccccc-chhhhhHHHHHH
Confidence                   0                   0000000000000                   00000000 000000111111


Q ss_pred             HHHHHhhhhHHHHHHhhcccCCCCccccCccccchhHHHHHHHHHHHHHHHhhhhccccCCCCCCChhHHHHHHHHHHHH
Q 006712          389 NVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSIL  468 (634)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~rr~~~~~~~~~~~~~i~~G~~l~~~  468 (634)
                      .......   ............+.-............+...+...+.+++.||..+|           +.+.++.++.++
T Consensus       236 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----------~~~~~~~~~~~~  301 (417)
T d1pv7a_         236 YDVFDQQ---FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSV  301 (417)
T ss_dssp             HHHHHHH---HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----------HHHHHHHHHHHH
T ss_pred             HHhhhcc---ccccccccccccccchhhhcccccccccccccchhhhhhhhcccccc-----------cchhhhHHHHHH
Confidence            1111110   11100000000000000111222333444445555566666665555           346667666666


Q ss_pred             HHHHHHHHHHHHHhhhhhcCccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-HHHh
Q 006712          469 SVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAG  547 (634)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~  547 (634)
                      +++.+...                       .+.+.+++..++.+++.+...+...+++.+.+|++.|+++.|+. ++..
T Consensus       302 ~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (417)
T d1pv7a_         302 RIIGSSFA-----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK  358 (417)
T ss_dssp             HHHHHHTC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTH
T ss_pred             hhhccccc-----------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHH
Confidence            65554432                       25667777788899999999999999999999999999999985 5677


Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCccccCCccchhhHHHHHHHHHHHHHHHHHHHhhcccee
Q 006712          548 GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY  612 (634)
Q Consensus       548 ~ig~~lg~~l~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~v~~~~~~~~~~~~~~  612 (634)
                      .+|..+++.+.+.+.+..+                  +...|++.+++.++..++.++..++.+.
T Consensus       359 ~~g~~i~~~~~G~l~~~~g------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         359 QLAMIFMSVLAGNMYESIG------------------FQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            8999999999998877443                  3567888888888887777777665443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=4.5e-13  Score=140.86  Aligned_cols=181  Identities=15%  Similarity=0.059  Sum_probs=141.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 006712           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (634)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~  146 (634)
                      +.+.++......++.....+++..+.+.|+.+.++.+..+.++....+.+...++.+++|+++||+ +|++.........
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~  325 (447)
T d1pw4a_         247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM  325 (447)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred             cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence            345677788888888888889999999999999999999999999999999999999999999998 8776544443333


Q ss_pred             HHHHHHHHHhhhhcccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhh
Q 006712          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (634)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  226 (634)
                      .+....+....    ..+.                   .+.+..++..++.|++.++..+....+..|.+|++.      
T Consensus       326 ~~~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------  376 (447)
T d1pw4a_         326 TLVTIATIVYW----MNPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------  376 (447)
T ss_dssp             HHHHHHHHHTT----SCCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred             HHHHHHHHHHH----hccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence            32222222211    1111                   455667777788899988889999999999999998      


Q ss_pred             hhhHHHHHHHHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006712          227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (634)
Q Consensus       227 r~~~~~~~~~~~~l-g~~~~p~i~~~l~~~~gw~~~f~~~~~~~~i~~~~~~  277 (634)
                      |+++.++.+...++ |..++|.+.+++.+.+||+..|++..++.+++.++..
T Consensus       377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            99999998887776 5667899999999999999998887766655555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.8e-12  Score=130.95  Aligned_cols=147  Identities=10%  Similarity=0.020  Sum_probs=123.5

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccccccCCC
Q 006712          100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC  179 (634)
Q Consensus       100 ~~~s~~~~~~~~~~~~~~~~~~~l~~G~lsDr~~GRr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (634)
                      .+.+....+.......++..++.++.|++.||+ |||+++.++.++..++.+++.+.                       
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-----------------------  309 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA-----------------------  309 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC-----------------------
T ss_pred             cccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc-----------------------
Confidence            344556677778888888999999999999998 99999999999888887777765                       


Q ss_pred             CCccchhHHHHHHHHHHHHHhhhchhhhHHHHhhccCCCCCcchhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhccch
Q 006712          180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGW  258 (634)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~-~~~~~lg~~~~p~i~~~l~~~~gw  258 (634)
                           .+.+.+++..++.|++.+...+...+++.|.+|++.      |++.+++. .....+|..++|.+.|++.+..|+
T Consensus       310 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~  378 (417)
T d1pv7a_         310 -----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF  378 (417)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred             -----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence                 466778888889999999999999999999999999      99999985 456789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 006712          259 GSAFGALAIAMGISNMLFFIGTP  281 (634)
Q Consensus       259 ~~~f~~~~~~~~i~~~~~~~~~~  281 (634)
                      +..|++.+++.++..++..+..+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         379 QGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Confidence            99998887776666555554443