BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006713
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 250/612 (40%), Positives = 342/612 (55%), Gaps = 37/612 (6%)
Query: 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG 61
F KDG+PFR I G +HY R+ +W+DRLL+ K GLN IQTYVPWN HEP PG+ FS
Sbjct: 18 FLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSE 77
Query: 62 IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVE 121
D+ FL+L +L LLV+LRPGPYICAEW++GG RSSD YL V+
Sbjct: 78 DHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKESILLRSSDPDYLAAVD 136
Query: 122 RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-GDDKEYLHHLVTLARAHLGKDIILYT 180
+W GVLLPK+ PLLY GGP++ VQ+ENE+GSY D +YL L R HLG D++L+T
Sbjct: 137 KWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFT 196
Query: 181 TDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLT 240
TDG + L G ++G ++ VDF TG+ F Q++ K P ++SEFYTGWL
Sbjct: 197 TDGAHKTFLKCGALQG--LYTTVDFGTGSNITDAFLSQRKCEP--KGPLINSEFYTGWLD 252
Query: 241 HWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTS 300
HWG+ + + AS L IL++ S LYM GGTNF ++NGAN S Y TS
Sbjct: 253 HWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNGAN-----SPYAAQPTS 307
Query: 301 YDYDAPIKESGDVDNPKFKAIRRVVEKFSPASLPSVLPDNEKAGFGPIQLQKTAXXXXXX 360
YDYDAP+ E+GD+ K+ A+R +++KF + P K +G + L+K
Sbjct: 308 YDYDAPLSEAGDLTE-KYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAAL 366
Query: 361 XXXXXXXXXESENPLSMESVGQMFGFLLYVSEFGGKDYGSSLL---ISKVHDRAQVFISC 417
+S PL+ V Q +GF+LY + + L ++ VHDRA V +
Sbjct: 367 DILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAV-- 424
Query: 418 PTEDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGRVNYGPYMFDEKGILS 477
G P G +ER N ++L N + +L +LVENMGRVNYG Y+ D KG++S
Sbjct: 425 -----DGIPQ--GVLER--NNVITL-NITGKAGATLDLLVENMGRVNYGAYINDFKGLVS 474
Query: 478 SVYLGGKVLRGWKMIPVPFHNLNEVPKISPILEVAYSGLIKASARKKLEHNAGNITKEPA 537
++ L +L W + P L+ + L + + HN+ N T PA
Sbjct: 475 NLTLSSNILTDWTIFP-----LDTEDAVRSHLG-GWGHRDSGHHDEAWAHNSSNYTL-PA 527
Query: 538 FYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-R 594
FY+G FSI + +DT++ F GW KG ++N FNLGR+WP+ GPQ L+VP IL
Sbjct: 528 FYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMT 587
Query: 595 HGENLVVIFELE 606
N + + ELE
Sbjct: 588 SAPNTITVLELE 599
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 323 bits (829), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 228/624 (36%), Positives = 318/624 (50%), Gaps = 53/624 (8%)
Query: 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG 61
F DG+ F+I+ G +HYFR+ P+ W L KALG NT++TYV WNLHEP G+ F G
Sbjct: 10 FYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEG 69
Query: 62 IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVE 121
DL FL++ Q L L ++RP P+ICAEW+ GG RSSD AY++ V
Sbjct: 70 DLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGL--PAWLLTKNMRIRSSDPAYIEAVG 127
Query: 122 RWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYTT 181
R++ LLP++ P L D GG I+M+Q+ENE+GSYG+DK YL + L G L+T+
Sbjct: 128 RYYDQLLPRLVPRLLDNGGNILMMQVENEYGSYGEDKAYLRAIRQLME-ECGVTCPLFTS 186
Query: 182 DGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPL-SSEFYTGWLT 240
DG R TL GT+ + +F +F + A P+ ++Q+ F+ GK PL EF+ GW
Sbjct: 187 DGPWRATLKAGTLIEEDLFVTGNFGSKA-PYNFSQMQEFFDEHGKKWPLMCMEFWDGWFN 245
Query: 241 HWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTS 300
W E I D A + ++L Q GS LYM HGGTNFGF NG + T P +TS
Sbjct: 246 RWKEPIITRDPKELADAVREVLEQ-GSINLYMFHGGTNFGFMNGCSARGTLD--LPQVTS 302
Query: 301 YDYDAPIKESGDVDNPKFKAIRRVVEKFSPASLPSVLP-DNEKAGFGPIQLQKTAXXXXX 359
YDYDA + E G+ K+ A+++++ + P + P E I L +
Sbjct: 303 YDYDALLDEEGN-PTAKYLAVKKMMATHF-SEYPQLEPLYKESMELDAIPLVEKV--SLF 358
Query: 360 XXXXXXXXXXESENPLSMESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPT 419
ES P ME +GQ +G+LLY +E L I DRAQ+++
Sbjct: 359 ETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDAEEERLRIIDGRDRAQLYVDGQW 418
Query: 420 EDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGRVNYG-PYMFD--EKGIL 476
+ T +G + + L L +L+ENMGRVNYG ++ D KGI
Sbjct: 419 VKTQYQ-TEIGEDIFYQGKKKGLSR--------LDILIENMGRVNYGHKFLADTQRKGIR 469
Query: 477 SSVYLGGKVLRGWKMIPVPFHNLNEVPKISPILEVAYSGLIKASARKKLEHNAGNITKEP 536
+ V L WK P+P N +K++ + G +P
Sbjct: 470 TGVCKDLHFLLNWKHYPLPLDN-----------------------PEKIDFSKGWTQGQP 506
Query: 537 AFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHG 596
AFY F+++ + KDTYL S +GKG+AFVN NLGRFW + GP LY+P L+ G
Sbjct: 507 AFYAYDFTVE---EPKDTYLDLSEFGKGVAFVNGQNLGRFW-NVGPTLSLYIPHSYLKEG 562
Query: 597 ENLVVIFELESPNSELVIHSVNQP 620
N ++IFE E E IH +P
Sbjct: 563 ANRIIIFETEGQYKE-EIHLTRKP 585
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 291 bits (745), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 203/627 (32%), Positives = 306/627 (48%), Gaps = 60/627 (9%)
Query: 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS 60
F +GEPF + ++HY RI ++WE R+ KALG NTI YV WN HEP+ G+ F+
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 61 GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLV 120
G D+ +F +L Q+ V++RPGPY+CAEW+ GG R D Y + V
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGL-PWWLLKKKDIKLREQDPYYXERV 132
Query: 121 ERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYT 180
+ + + ++A L GG I+ VQ+ENE+G++G DK Y+ + + + L+
Sbjct: 133 KLFLNEVGKQLADLQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGFTGVPLFQ 192
Query: 181 TDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWLT 240
D + + D + ++F TGA FK K+ +P SEF++GW
Sbjct: 193 CDWNS--NFENNAL--DDLLWTINFGTGANIDEQFKRLKELRP--DTPLXCSEFWSGWFD 246
Query: 241 HWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTS 300
HWG K A+ ++ L +N S LY HGGT+FG + GAN N + P TS
Sbjct: 247 HWGAKHETRSAEELVKGXKEXLDRNISFSLYXTHGGTSFGHWGGANFPN----FSPTCTS 302
Query: 301 YDYDAPIKESGDVDNPKFKAIRRVVEKFSP--ASLPSVLPDNEKAGFGPIQLQKTAXXXX 358
YDYDAPI ESG V PK+ +R ++ + P +LP + PD+ I +
Sbjct: 303 YDYDAPINESGKV-TPKYLEVRNLLGNYLPEGETLPEI-PDS----IPTIAIPTIKXTEX 356
Query: 359 XXXXXXXXXXXESENPLSMESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCP 418
ESE+ + E+ Q +G +LY + D +LLI++ HD AQVF++
Sbjct: 357 AVLFDNLPHPKESEDIRTXEAFDQGWGSILYRTSLSASDKEQTLLITEAHDWAQVFLNGK 416
Query: 419 TEDNSGRPTYVGTIERWSNRA-LSLPNFRCGSNISLFVLVENMGRVNYGPYMFDEKGILS 477
+ T+ R + LP + G + +LVE GR N+G ++D KGI
Sbjct: 417 K---------LATLSRLKGEGVVKLPPLKEGDRLD--ILVEAXGRXNFGKGIYDWKGITE 465
Query: 478 SVYL----GGKVLRGWKMIPVPFHNLNEVPKISPILEVAYSGLIKASARKKLEHNAGNIT 533
V L G ++++ W++ +P V YS AR K N
Sbjct: 466 KVELQSDKGVELVKDWQVYTIP---------------VDYS-----FARDKQYKQQENAE 505
Query: 534 KEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL 593
+PA+Y F++ N++ DT+L+ W KG +VN +GR+W GPQ LYVP L
Sbjct: 506 NQPAYYRSTFNL---NELGDTFLNXXNWSKGXVWVNGHAIGRYW-EIGPQQTLYVPGCWL 561
Query: 594 RHGENLVVIFELESPNSELVIHSVNQP 620
+ GEN ++I + P S+ + QP
Sbjct: 562 KKGENEIIILDXAGP-SKAETEGLRQP 587
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 149/355 (41%), Gaps = 39/355 (10%)
Query: 5 DGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIA 63
+GE I G++H +R+ + + D + KALG N + YV W L E PG GI
Sbjct: 16 NGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIF 75
Query: 64 DLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERW 123
DL F ++ + ++ RPGPYI AE GGF R+SD AYL+ + +
Sbjct: 76 DLQPFFDAAKEAGIYLLARPGPYINAEVSGGGF--PGWLQRVDGILRTSDEAYLKATDNY 133
Query: 124 WGVLLPKIAPLLYDIGGPIVMVQIENEF-----GSYG-DDKEYLHHLVTLARAHLGKDII 177
+ IA GGPI++ Q ENE+ G G D Y+ ++ AR G +
Sbjct: 134 ASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHAR-DAGIVVP 192
Query: 178 LYTTDGGTRETLLKGTIRGDA-VFAAVDFSTG---AEP--WPIFKLQKQFNAPGK----S 227
+ D GT G ++ + G A P WP L F+ + S
Sbjct: 193 FISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPS 252
Query: 228 PPLS-SEFYTGWLTHWGEKIAKTDADFTASYLEKILSQN----GSAV--LYMAHGGTNFG 280
P S EF G WG A E++ +N G A LYM GGTN+G
Sbjct: 253 TPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWG 312
Query: 281 FYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRV--VEKFSPASL 333
N G + TSYDY + I ES ++ K+ ++ + K SP L
Sbjct: 313 -----NLG-----HPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYL 357
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 153/364 (42%), Gaps = 39/364 (10%)
Query: 6 GEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIAD 64
GE I G++H FR+ +P + D + KALG NT+ YV W L E KPG+ GI
Sbjct: 37 GERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFS 96
Query: 65 LVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWW 124
L F + K + ++ RPGPYI AE GGF + D YL + +
Sbjct: 97 LEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKLRTDAPD--YLHATDNYV 154
Query: 125 GVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD-----DKEYLHHLVTLARAHLGKDIILY 179
+ IA GGP+++ Q ENE+ + +K Y+ +++ AR + G + L
Sbjct: 155 AHIASIIAKAQITNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQAR-NAGIIVPLI 213
Query: 180 TTDGGTRETLLKGTIRGDA-VFAAVDFSTG---AEP--WPIFKL-----QKQFNAPGKSP 228
D T GT G ++ + G A P WP L Q N +P
Sbjct: 214 NNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTP 273
Query: 229 PLSSEFYTGWLTHWGEKIAKTDADFTASYLEKILSQNGSAV------LYMAHGGTNFGFY 282
EF G +G + + E++ +N A +YM GGTN+G
Sbjct: 274 FSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWG-- 331
Query: 283 NGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFKAIRRVVE--KFSPASLPSVLPDN 340
N G+ TSYDY A I+E +D K+ ++ + K SP + + P+N
Sbjct: 332 ---NLGHPGG-----YTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPGYI-TATPEN 382
Query: 341 EKAG 344
G
Sbjct: 383 ATQG 386
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 537 AFYVGRFSIDKVNQVKDTYLSF-------SGWGKGIAFVNEFNLGRFWPSFGPQCDLYVP 589
AFY + + Q D LSF + + + +VN F G++ + GPQ + VP
Sbjct: 885 AFYAAKLPLHLPAQEYDIPLSFVFDNATAAAPYRALLYVNGFQYGKYVSNIGPQTEFPVP 944
Query: 590 APILRH-GENL--VVIFELESPNSEL 612
IL + G+N V ++ LES +++
Sbjct: 945 EGILDYNGDNWIGVALWALESRGAKV 970
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 157 DKEYLHHLVTLARAH-----LGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEP 211
D +HHLV +A AH LG D T GTR ++ G + +A F D S
Sbjct: 138 DHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHR 197
Query: 212 WPIFKLQKQ--FNAPGKSPPLSSEFYTGWLTHWGEKI 246
+ K Q P K+ +S + GE+
Sbjct: 198 EFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEEC 234
>pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
pdb|2VOA|B Chain B, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
Length = 257
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 27 EDRLLRAKALGLNTIQTYVP 46
EDRL+RAK G++ I TYVP
Sbjct: 88 EDRLIRAKIAGIDVINTYVP 107
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 5 DGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIAD 64
DG PF + ++ P + +G NT+Q + W EP G+ FS + D
Sbjct: 54 DGAPFLXLAAQVNNSSAWPSQXAKVWPAIEKVGANTVQVPIAWEQIEPVEGQFDFSYL-D 112
Query: 65 LVSFLKLCQKLDLLVM 80
L+ +K+ L+++
Sbjct: 113 LLLEQARERKVRLVLL 128
>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG 55
++WED LL+ K+LG N I+ +P+ KPG
Sbjct: 84 RNWEDMLLQIKSLGFNAIR--LPFCTESVKPG 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,157,259
Number of Sequences: 62578
Number of extensions: 897500
Number of successful extensions: 1857
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1813
Number of HSP's gapped (non-prelim): 25
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)