Query 006713
Match_columns 634
No_of_seqs 220 out of 1560
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 13:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-145 3E-150 1237.9 53.5 572 1-625 36-733 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-127 7E-132 1049.2 50.5 586 1-626 26-645 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.1E-94 2.5E-99 764.2 23.1 318 1-328 1-319 (319)
4 COG1874 LacA Beta-galactosidas 100.0 7.3E-46 1.6E-50 417.6 8.9 544 1-607 7-592 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 3.8E-22 8.2E-27 216.3 14.3 139 15-169 1-161 (374)
6 PF13364 BetaGal_dom4_5: Beta- 99.3 5.6E-12 1.2E-16 114.1 7.2 71 533-607 33-109 (111)
7 PF02836 Glyco_hydro_2_C: Glyc 99.3 1.7E-10 3.7E-15 121.5 18.2 136 1-171 7-148 (298)
8 PRK10150 beta-D-glucuronidase; 99.1 8.9E-09 1.9E-13 118.8 24.6 142 1-171 284-439 (604)
9 PF00150 Cellulase: Cellulase 99.1 2.3E-09 5.1E-14 110.4 16.7 157 4-182 3-172 (281)
10 COG3250 LacZ Beta-galactosidas 98.7 1.6E-07 3.5E-12 110.4 13.6 112 1-153 292-409 (808)
11 PRK10340 ebgA cryptic beta-D-g 98.7 2.7E-07 5.8E-12 112.1 15.5 135 1-171 326-466 (1021)
12 PRK09525 lacZ beta-D-galactosi 98.6 2.9E-07 6.4E-12 111.7 15.2 131 1-170 342-478 (1027)
13 smart00633 Glyco_10 Glycosyl h 98.5 3.5E-06 7.7E-11 87.0 17.5 113 47-184 3-127 (254)
14 PF13364 BetaGal_dom4_5: Beta- 98.3 4.1E-06 9E-11 75.9 9.3 79 375-462 25-110 (111)
15 PLN02803 beta-amylase 98.2 7.2E-06 1.6E-10 90.7 10.0 118 23-148 106-253 (548)
16 PLN00197 beta-amylase; Provisi 98.2 8.3E-06 1.8E-10 90.5 10.0 82 23-109 126-217 (573)
17 PLN02705 beta-amylase 98.1 9.1E-06 2E-10 90.8 9.7 82 23-109 267-358 (681)
18 TIGR03356 BGL beta-galactosida 98.1 7.3E-06 1.6E-10 90.9 9.0 109 23-151 53-162 (427)
19 PLN02905 beta-amylase 98.1 1.2E-05 2.7E-10 90.0 9.9 115 23-148 285-433 (702)
20 PLN02161 beta-amylase 98.1 1.5E-05 3.2E-10 87.9 10.2 119 23-148 116-263 (531)
21 PLN02801 beta-amylase 98.1 1.5E-05 3.3E-10 87.9 9.9 119 23-148 36-184 (517)
22 PF13204 DUF4038: Protein of u 98.1 0.00026 5.7E-09 74.7 19.0 148 4-175 8-180 (289)
23 PF00331 Glyco_hydro_10: Glyco 98.0 0.00014 3E-09 77.9 15.3 273 11-324 11-319 (320)
24 PF03198 Glyco_hydro_72: Gluca 97.8 0.00019 4.1E-09 75.5 12.8 195 4-237 22-249 (314)
25 PF01373 Glyco_hydro_14: Glyco 97.8 1.9E-05 4E-10 85.6 4.2 114 25-147 17-152 (402)
26 PF02837 Glyco_hydro_2_N: Glyc 97.6 0.00021 4.7E-09 68.4 8.3 93 381-482 64-164 (167)
27 PRK09852 cryptic 6-phospho-bet 97.3 0.00022 4.7E-09 80.2 5.1 97 23-131 70-168 (474)
28 PF14488 DUF4434: Domain of un 97.3 0.0039 8.4E-08 60.6 13.2 127 19-171 15-151 (166)
29 PRK15014 6-phospho-beta-glucos 97.3 0.00093 2E-08 75.3 9.3 97 24-132 69-167 (477)
30 PLN02998 beta-glucosidase 97.2 0.00035 7.6E-09 79.0 5.6 103 23-133 81-184 (497)
31 COG3693 XynA Beta-1,4-xylanase 97.2 0.0031 6.7E-08 66.5 11.5 124 38-184 58-195 (345)
32 PLN02814 beta-glucosidase 97.2 0.00044 9.4E-09 78.3 5.6 102 23-132 76-178 (504)
33 PRK09593 arb 6-phospho-beta-gl 97.1 0.00067 1.4E-08 76.5 6.6 103 23-133 72-176 (478)
34 PF00232 Glyco_hydro_1: Glycos 97.1 0.00026 5.7E-09 79.3 2.9 110 23-152 57-168 (455)
35 COG2730 BglC Endoglucanase [Ca 97.1 0.0017 3.6E-08 71.9 8.7 114 23-153 67-193 (407)
36 PRK09589 celA 6-phospho-beta-g 97.1 0.00079 1.7E-08 75.8 6.1 104 23-134 66-171 (476)
37 PF07745 Glyco_hydro_53: Glyco 97.0 0.0017 3.7E-08 69.7 7.9 105 27-152 27-136 (332)
38 PLN02849 beta-glucosidase 97.0 0.00072 1.6E-08 76.6 5.3 104 23-134 78-182 (503)
39 PRK13511 6-phospho-beta-galact 97.0 0.0027 5.8E-08 71.5 9.2 96 23-131 53-149 (469)
40 TIGR01233 lacG 6-phospho-beta- 96.9 0.0036 7.7E-08 70.5 9.5 96 23-127 52-148 (467)
41 PF02837 Glyco_hydro_2_N: Glyc 96.5 0.0078 1.7E-07 57.6 7.4 94 533-631 66-161 (167)
42 COG2723 BglB Beta-glucosidase/ 96.4 0.0047 1E-07 68.5 5.5 98 23-132 58-157 (460)
43 COG3867 Arabinogalactan endo-1 95.8 0.043 9.4E-07 57.3 9.1 110 27-152 66-182 (403)
44 PF02638 DUF187: Glycosyl hydr 95.3 0.05 1.1E-06 58.1 7.9 118 22-148 17-161 (311)
45 PF14871 GHL6: Hypothetical gl 95.0 0.12 2.5E-06 48.5 8.4 98 28-131 4-123 (132)
46 COG3934 Endo-beta-mannanase [C 94.2 0.029 6.3E-07 61.9 2.7 155 2-169 4-168 (587)
47 PRK10150 beta-D-glucuronidase; 94.1 0.21 4.5E-06 58.1 9.6 91 383-482 63-177 (604)
48 smart00642 Aamy Alpha-amylase 93.2 0.25 5.5E-06 47.9 7.0 67 23-89 18-96 (166)
49 PF01229 Glyco_hydro_39: Glyco 93.0 0.15 3.2E-06 57.9 5.7 68 14-84 29-105 (486)
50 COG1649 Uncharacterized protei 92.9 0.48 1E-05 52.4 9.3 138 22-170 62-227 (418)
51 PRK10340 ebgA cryptic beta-D-g 92.5 0.43 9.2E-06 59.0 9.2 88 385-484 109-206 (1021)
52 TIGR01515 branching_enzym alph 92.3 2.3 5E-05 49.8 14.5 57 26-83 158-226 (613)
53 PRK09936 hypothetical protein; 92.1 2 4.4E-05 45.3 12.2 58 19-82 33-91 (296)
54 PRK09525 lacZ beta-D-galactosi 92.0 0.55 1.2E-05 58.0 9.3 87 384-482 119-216 (1027)
55 PRK09441 cytoplasmic alpha-amy 90.4 0.47 1E-05 53.7 6.2 68 16-83 7-101 (479)
56 KOG0496 Beta-galactosidase [Ca 90.0 0.12 2.7E-06 59.2 1.1 31 297-329 300-330 (649)
57 TIGR00542 hxl6Piso_put hexulos 89.8 7.3 0.00016 40.5 14.0 128 23-178 15-151 (279)
58 PF05913 DUF871: Bacterial pro 89.5 0.48 1E-05 51.7 5.1 72 12-89 2-73 (357)
59 TIGR03234 OH-pyruv-isom hydrox 89.0 6.6 0.00014 40.1 12.8 43 25-81 15-57 (254)
60 PF13200 DUF4015: Putative gly 88.9 0.99 2.1E-05 48.4 6.8 61 23-83 12-81 (316)
61 PRK01060 endonuclease IV; Prov 88.5 7.3 0.00016 40.4 12.9 94 25-146 13-109 (281)
62 KOG2230 Predicted beta-mannosi 88.2 2 4.4E-05 48.7 8.8 110 2-150 330-444 (867)
63 PF01261 AP_endonuc_2: Xylose 88.0 1.6 3.5E-05 42.3 7.3 124 30-180 1-132 (213)
64 PRK05402 glycogen branching en 88.0 9.3 0.0002 45.7 14.8 57 27-83 268-335 (726)
65 PRK13210 putative L-xylulose 5 87.5 9 0.0002 39.6 12.9 128 24-177 16-150 (284)
66 PF00128 Alpha-amylase: Alpha 86.8 0.76 1.6E-05 47.4 4.4 58 26-83 6-72 (316)
67 PRK14706 glycogen branching en 86.7 13 0.00028 43.8 14.8 53 30-82 174-236 (639)
68 PLN02447 1,4-alpha-glucan-bran 86.4 1.6 3.6E-05 51.9 7.2 61 23-84 250-321 (758)
69 PRK12568 glycogen branching en 86.1 21 0.00045 42.7 16.0 57 27-85 273-341 (730)
70 PRK12313 glycogen branching en 84.0 2.1 4.4E-05 50.3 6.6 57 27-83 173-240 (633)
71 TIGR02402 trehalose_TreZ malto 83.8 2 4.3E-05 49.6 6.2 54 27-83 114-180 (542)
72 PRK09856 fructoselysine 3-epim 82.0 42 0.0009 34.5 14.8 127 24-176 13-145 (275)
73 COG3589 Uncharacterized conser 81.1 3.1 6.6E-05 44.7 5.9 72 12-90 4-76 (360)
74 cd06593 GH31_xylosidase_YicI Y 80.0 4.1 8.9E-05 43.2 6.6 69 21-89 21-92 (308)
75 PRK09505 malS alpha-amylase; R 79.9 3.9 8.4E-05 48.5 6.9 59 25-83 231-312 (683)
76 PRK10933 trehalose-6-phosphate 79.7 3.8 8.3E-05 47.3 6.7 56 25-83 34-101 (551)
77 PRK10785 maltodextrin glucosid 79.4 4 8.6E-05 47.7 6.7 58 25-82 180-245 (598)
78 TIGR02104 pulA_typeI pullulana 79.3 3.6 7.8E-05 48.1 6.3 55 28-83 168-249 (605)
79 PF02679 ComA: (2R)-phospho-3- 79.2 2.3 5E-05 44.0 4.2 52 23-84 83-134 (244)
80 PLN02960 alpha-amylase 79.2 4.1 9E-05 49.1 6.8 57 27-83 420-486 (897)
81 TIGR02403 trehalose_treC alpha 78.6 3.3 7.1E-05 47.8 5.7 59 23-83 26-95 (543)
82 KOG0626 Beta-glucosidase, lact 77.8 5.5 0.00012 45.3 6.9 101 24-132 91-194 (524)
83 TIGR02456 treS_nterm trehalose 77.6 4.9 0.00011 46.2 6.8 57 23-82 27-95 (539)
84 smart00812 Alpha_L_fucos Alpha 77.5 18 0.00039 40.0 10.8 106 19-134 79-192 (384)
85 PLN02361 alpha-amylase 77.4 5.5 0.00012 44.2 6.8 57 27-83 32-96 (401)
86 PRK13209 L-xylulose 5-phosphat 77.1 39 0.00085 34.9 12.8 97 24-145 21-118 (283)
87 PRK09997 hydroxypyruvate isome 76.6 38 0.00083 34.7 12.4 49 16-81 10-58 (258)
88 cd00019 AP2Ec AP endonuclease 76.2 71 0.0015 33.0 14.4 100 21-149 8-108 (279)
89 smart00518 AP2Ec AP endonuclea 75.3 49 0.0011 34.0 12.9 101 14-146 3-104 (273)
90 cd06592 GH31_glucosidase_KIAA1 74.4 9 0.00019 40.7 7.2 67 19-88 25-95 (303)
91 COG0296 GlgB 1,4-alpha-glucan 73.9 8.6 0.00019 44.9 7.4 58 23-82 164-233 (628)
92 PRK09989 hypothetical protein; 73.8 56 0.0012 33.5 12.8 44 25-82 16-59 (258)
93 PF02065 Melibiase: Melibiase; 73.6 22 0.00048 39.4 10.2 114 17-131 51-182 (394)
94 cd06589 GH31 The enzymes of gl 72.3 14 0.00031 38.3 8.0 65 22-87 22-90 (265)
95 PRK14705 glycogen branching en 72.0 8.6 0.00019 48.4 7.2 56 27-82 769-834 (1224)
96 cd06564 GH20_DspB_LnbB-like Gl 71.5 42 0.00092 36.0 11.6 144 14-179 9-199 (326)
97 TIGR02631 xylA_Arthro xylose i 71.2 51 0.0011 36.4 12.4 100 22-145 30-134 (382)
98 TIGR03849 arch_ComA phosphosul 71.1 8.9 0.00019 39.5 5.9 53 23-85 70-122 (237)
99 cd02742 GH20_hexosaminidase Be 71.0 30 0.00066 36.7 10.3 59 21-82 13-91 (303)
100 cd06595 GH31_xylosidase_XylS-l 70.6 18 0.0004 38.2 8.5 64 22-85 23-96 (292)
101 cd06591 GH31_xylosidase_XylS X 70.3 9.5 0.00021 40.9 6.3 66 22-88 22-91 (319)
102 cd04908 ACT_Bt0572_1 N-termina 70.0 15 0.00034 29.4 6.1 55 23-81 12-66 (66)
103 PF01261 AP_endonuc_2: Xylose 69.8 26 0.00055 33.8 8.8 120 24-170 27-153 (213)
104 PF02055 Glyco_hydro_30: O-Gly 69.2 38 0.00083 38.7 11.1 162 7-183 74-281 (496)
105 PF13199 Glyco_hydro_66: Glyco 68.5 9.4 0.0002 44.2 6.1 81 23-105 117-214 (559)
106 cd06563 GH20_chitobiase-like T 68.1 76 0.0016 34.6 12.8 62 21-82 15-105 (357)
107 PF08531 Bac_rhamnosid_N: Alph 67.3 6 0.00013 38.5 3.7 50 553-604 5-63 (172)
108 cd06599 GH31_glycosidase_Aec37 67.1 17 0.00036 39.0 7.3 66 23-88 28-98 (317)
109 PRK14511 maltooligosyl trehalo 66.6 18 0.0004 43.9 8.1 62 21-86 17-92 (879)
110 PLN00196 alpha-amylase; Provis 66.5 16 0.00035 41.0 7.3 57 27-83 47-112 (428)
111 TIGR00677 fadh2_euk methylenet 66.3 17 0.00037 38.4 7.1 109 10-133 130-251 (281)
112 PRK12677 xylose isomerase; Pro 66.1 46 0.001 36.8 10.7 92 23-134 30-126 (384)
113 PRK14510 putative bifunctional 66.1 9.6 0.00021 48.2 6.0 55 28-82 191-266 (1221)
114 TIGR02100 glgX_debranch glycog 66.0 9.8 0.00021 45.2 5.8 55 29-83 189-265 (688)
115 TIGR02401 trehalose_TreY malto 65.8 15 0.00032 44.5 7.1 64 22-85 14-87 (825)
116 cd06602 GH31_MGAM_SI_GAA This 65.5 13 0.00029 40.2 6.3 73 16-89 13-92 (339)
117 cd06568 GH20_SpHex_like A subg 65.0 59 0.0013 35.1 11.1 62 21-82 15-94 (329)
118 cd06565 GH20_GcnA-like Glycosy 65.0 1.2E+02 0.0025 32.3 13.2 57 23-83 16-80 (301)
119 TIGR02103 pullul_strch alpha-1 64.9 11 0.00024 45.9 6.0 21 63-83 404-424 (898)
120 PF03659 Glyco_hydro_71: Glyco 64.8 24 0.00051 39.1 8.1 54 21-83 14-67 (386)
121 PRK14507 putative bifunctional 64.8 14 0.00031 47.8 7.2 62 21-85 755-829 (1693)
122 cd06603 GH31_GANC_GANAB_alpha 62.7 16 0.00035 39.4 6.3 68 22-90 22-91 (339)
123 PRK14582 pgaB outer membrane N 62.1 23 0.00049 42.0 7.7 127 7-151 312-468 (671)
124 cd06600 GH31_MGAM-like This fa 61.4 18 0.00038 38.8 6.2 67 22-89 22-90 (317)
125 COG3623 SgaU Putative L-xylulo 61.4 36 0.00078 35.1 7.9 90 23-134 17-108 (287)
126 TIGR02102 pullulan_Gpos pullul 60.3 16 0.00035 45.7 6.3 57 27-83 483-575 (1111)
127 PF14587 Glyco_hydr_30_2: O-Gl 60.1 54 0.0012 36.2 9.6 135 34-185 57-229 (384)
128 TIGR01531 glyc_debranch glycog 59.5 30 0.00066 44.0 8.4 92 22-120 130-236 (1464)
129 COG2159 Predicted metal-depend 58.8 1.4E+02 0.003 31.7 12.4 68 10-86 99-167 (293)
130 PRK03705 glycogen debranching 58.5 16 0.00035 43.3 5.7 54 29-82 184-261 (658)
131 cd06598 GH31_transferase_CtsZ 58.3 23 0.0005 37.9 6.5 67 22-88 22-95 (317)
132 PF05089 NAGLU: Alpha-N-acetyl 56.8 48 0.001 35.9 8.4 131 21-168 16-201 (333)
133 PLN02877 alpha-amylase/limit d 56.1 21 0.00044 44.0 6.1 20 63-82 466-485 (970)
134 PRK09856 fructoselysine 3-epim 55.9 20 0.00044 36.9 5.4 59 24-83 90-149 (275)
135 cd06547 GH85_ENGase Endo-beta- 55.5 30 0.00066 37.6 6.8 114 40-181 32-149 (339)
136 COG1306 Uncharacterized conser 54.2 28 0.0006 37.1 5.9 130 17-179 71-215 (400)
137 smart00481 POLIIIAc DNA polyme 54.1 39 0.00084 27.1 5.7 46 24-82 15-60 (67)
138 PLN02784 alpha-amylase 54.0 32 0.0007 41.7 7.2 57 27-83 524-588 (894)
139 PF01791 DeoC: DeoC/LacD famil 53.4 4 8.6E-05 41.6 -0.3 53 27-82 79-131 (236)
140 smart00518 AP2Ec AP endonuclea 53.3 1.7E+02 0.0037 30.0 11.8 72 8-81 26-102 (273)
141 cd06601 GH31_lyase_GLase GLase 53.0 34 0.00073 37.0 6.7 72 16-88 13-89 (332)
142 PF06832 BiPBP_C: Penicillin-B 51.3 43 0.00094 28.6 5.9 68 383-463 17-84 (89)
143 PRK09267 flavodoxin FldA; Vali 51.0 99 0.0022 29.5 9.0 74 6-82 46-119 (169)
144 PF14683 CBM-like: Polysacchar 50.5 13 0.00027 36.3 2.7 47 560-607 91-153 (167)
145 PF14307 Glyco_tran_WbsX: Glyc 50.5 3E+02 0.0065 29.8 13.6 134 22-182 56-197 (345)
146 cd06604 GH31_glucosidase_II_Ma 50.5 34 0.00073 36.9 6.2 66 22-88 22-89 (339)
147 PF14307 Glyco_tran_WbsX: Glyc 49.8 3.4E+02 0.0074 29.3 13.9 31 121-153 297-327 (345)
148 TIGR02455 TreS_stutzeri trehal 49.5 43 0.00093 39.4 7.1 70 31-100 81-175 (688)
149 COG0366 AmyA Glycosidases [Car 49.1 28 0.0006 38.9 5.5 56 27-82 32-96 (505)
150 PRK00042 tpiA triosephosphate 48.5 1.1E+02 0.0023 31.9 9.2 91 30-131 79-196 (250)
151 PLN03059 beta-galactosidase; P 47.5 52 0.0011 39.9 7.6 71 534-605 469-545 (840)
152 PRK12331 oxaloacetate decarbox 47.1 46 0.00099 37.6 6.8 55 16-82 88-142 (448)
153 cd06570 GH20_chitobiase-like_1 46.6 2.9E+02 0.0063 29.6 12.5 62 21-82 15-87 (311)
154 PF04914 DltD_C: DltD C-termin 45.2 14 0.0003 34.6 1.9 29 62-91 35-63 (130)
155 PF01055 Glyco_hydro_31: Glyco 45.1 37 0.0008 37.8 5.7 68 22-90 41-110 (441)
156 PRK09997 hydroxypyruvate isome 44.8 35 0.00076 35.0 5.1 60 24-83 85-144 (258)
157 cd06562 GH20_HexA_HexB-like Be 44.6 3E+02 0.0064 29.9 12.4 62 21-82 15-89 (348)
158 PRK13210 putative L-xylulose 5 43.8 41 0.00088 34.7 5.4 59 24-83 94-153 (284)
159 PF12876 Cellulase-like: Sugar 43.6 28 0.0006 29.9 3.5 44 137-180 6-62 (88)
160 PF13380 CoA_binding_2: CoA bi 43.4 56 0.0012 29.6 5.6 44 21-80 63-106 (116)
161 PRK13398 3-deoxy-7-phosphohept 43.2 1.2E+02 0.0026 31.8 8.8 74 3-83 22-98 (266)
162 PRK08227 autoinducer 2 aldolas 42.5 50 0.0011 34.7 5.7 47 29-81 99-145 (264)
163 cd06597 GH31_transferase_CtsY 42.2 60 0.0013 35.2 6.6 73 16-88 13-110 (340)
164 cd00311 TIM Triosephosphate is 42.0 49 0.0011 34.2 5.6 49 30-84 77-125 (242)
165 PRK09875 putative hydrolase; P 41.9 1.4E+02 0.003 31.8 9.1 63 23-102 33-95 (292)
166 KOG2024 Beta-Glucuronidase GUS 41.5 36 0.00079 35.6 4.4 45 373-417 70-127 (297)
167 cd01299 Met_dep_hydrolase_A Me 40.8 68 0.0015 34.0 6.7 59 23-82 119-179 (342)
168 COG5309 Exo-beta-1,3-glucanase 40.5 2.2E+02 0.0047 30.2 9.7 118 20-185 58-181 (305)
169 TIGR00419 tim triosephosphate 39.8 53 0.0011 33.2 5.2 44 30-83 74-117 (205)
170 PRK12858 tagatose 1,6-diphosph 39.6 38 0.00081 36.9 4.5 64 16-82 99-162 (340)
171 COG1523 PulA Type II secretory 38.7 46 0.00099 39.7 5.3 53 30-82 206-284 (697)
172 KOG1065 Maltase glucoamylase a 38.2 46 0.00099 40.0 5.1 64 23-89 310-377 (805)
173 PRK08645 bifunctional homocyst 38.1 1E+02 0.0022 36.3 8.0 110 7-132 461-578 (612)
174 TIGR02635 RhaI_grampos L-rhamn 37.9 4.4E+02 0.0096 29.2 12.4 92 23-143 39-133 (378)
175 TIGR03234 OH-pyruv-isom hydrox 37.9 48 0.001 33.7 4.8 60 24-83 84-143 (254)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 37.9 89 0.0019 32.7 6.9 50 21-82 88-137 (275)
177 KOG0259 Tyrosine aminotransfer 37.8 38 0.00081 37.4 4.0 59 20-82 179-238 (447)
178 TIGR00676 fadh2 5,10-methylene 37.8 1.6E+02 0.0036 30.7 8.8 109 9-133 125-247 (272)
179 PF13987 YedD: YedD-like prote 37.5 28 0.00061 31.1 2.5 30 598-627 70-102 (111)
180 PF14701 hDGE_amylase: glucano 37.1 69 0.0015 35.9 6.1 91 22-119 20-127 (423)
181 cd06594 GH31_glucosidase_YihQ 36.9 1.1E+02 0.0024 32.7 7.6 67 22-88 21-96 (317)
182 TIGR00433 bioB biotin syntheta 35.4 53 0.0012 34.3 4.8 52 27-82 123-177 (296)
183 PF08306 Glyco_hydro_98M: Glyc 34.8 33 0.00072 36.8 3.0 88 10-123 104-199 (324)
184 PRK14040 oxaloacetate decarbox 34.4 79 0.0017 37.1 6.3 54 16-81 89-142 (593)
185 PF00728 Glyco_hydro_20: Glyco 34.4 72 0.0016 34.1 5.7 62 21-82 15-92 (351)
186 TIGR00542 hxl6Piso_put hexulos 34.3 72 0.0016 33.0 5.5 58 25-83 95-153 (279)
187 cd04882 ACT_Bt0572_2 C-termina 34.0 76 0.0016 24.5 4.4 55 23-79 10-64 (65)
188 PTZ00372 endonuclease 4-like p 33.5 7.3E+02 0.016 27.9 13.4 90 27-147 144-239 (413)
189 cd06416 GH25_Lys1-like Lys-1 i 33.3 88 0.0019 30.8 5.7 87 13-102 55-156 (196)
190 PRK10658 putative alpha-glucos 33.0 1.2E+02 0.0027 36.0 7.7 66 21-88 280-350 (665)
191 KOG2233 Alpha-N-acetylglucosam 32.6 2.5E+02 0.0053 32.2 9.2 150 20-183 74-289 (666)
192 cd00537 MTHFR Methylenetetrahy 32.3 1.3E+02 0.0027 31.4 6.9 95 24-133 147-250 (274)
193 COG0156 BioF 7-keto-8-aminopel 31.4 39 0.00084 37.5 3.0 61 12-82 143-207 (388)
194 PRK15492 triosephosphate isome 31.3 95 0.0021 32.5 5.7 49 30-84 87-135 (260)
195 PLN02763 hydrolase, hydrolyzin 31.1 1.3E+02 0.0027 37.5 7.4 67 22-89 199-267 (978)
196 PLN02561 triosephosphate isome 31.1 95 0.0021 32.4 5.6 49 30-84 81-129 (253)
197 PF10566 Glyco_hydro_97: Glyco 31.0 1.5E+02 0.0032 31.4 7.0 61 21-82 29-92 (273)
198 COG1082 IolE Sugar phosphate i 30.8 5.7E+02 0.012 25.8 13.0 52 22-82 13-64 (274)
199 PRK08673 3-deoxy-7-phosphohept 30.4 1.6E+02 0.0035 32.0 7.4 74 3-83 88-164 (335)
200 PRK09432 metF 5,10-methylenete 30.0 1.8E+02 0.0039 31.0 7.6 89 29-133 168-266 (296)
201 cd07944 DRE_TIM_HOA_like 4-hyd 29.8 1.4E+02 0.003 31.2 6.6 143 19-183 15-160 (266)
202 PRK10422 lipopolysaccharide co 29.3 1.2E+02 0.0027 32.5 6.4 71 12-85 189-273 (352)
203 KOG0470 1,4-alpha-glucan branc 28.8 59 0.0013 38.6 3.9 57 27-83 258-331 (757)
204 PF01075 Glyco_transf_9: Glyco 28.6 42 0.00092 33.7 2.6 74 9-85 108-194 (247)
205 PF07905 PucR: Purine cataboli 28.5 2.8E+02 0.0061 25.1 7.8 66 5-83 41-106 (123)
206 PTZ00333 triosephosphate isome 28.2 1.1E+02 0.0025 31.8 5.7 49 30-84 82-130 (255)
207 PF04909 Amidohydro_2: Amidohy 28.1 1.7E+02 0.0036 29.4 6.9 66 10-84 72-138 (273)
208 PF03851 UvdE: UV-endonuclease 27.8 7.3E+02 0.016 26.3 11.5 117 29-170 50-172 (275)
209 PRK13209 L-xylulose 5-phosphat 27.5 1E+02 0.0022 31.9 5.2 57 25-83 100-158 (283)
210 TIGR02201 heptsyl_trn_III lipo 27.5 1.1E+02 0.0024 32.6 5.7 79 7-85 181-271 (344)
211 cd00019 AP2Ec AP endonuclease 27.2 67 0.0015 33.2 3.8 60 24-84 85-144 (279)
212 PRK14566 triosephosphate isome 27.2 1.2E+02 0.0026 31.8 5.5 49 30-84 88-136 (260)
213 COG1735 Php Predicted metal-de 26.7 2.5E+02 0.0054 30.2 7.8 120 26-180 50-170 (316)
214 TIGR00587 nfo apurinic endonuc 26.7 4.9E+02 0.011 27.0 10.2 92 26-146 13-108 (274)
215 PRK14567 triosephosphate isome 26.5 1.3E+02 0.0029 31.3 5.8 49 30-84 78-126 (253)
216 KOG0622 Ornithine decarboxylas 26.2 1.3E+02 0.0028 33.6 5.7 62 21-83 190-252 (448)
217 TIGR01698 PUNP purine nucleoti 26.0 1E+02 0.0023 31.8 4.9 56 3-58 47-105 (237)
218 PTZ00372 endonuclease 4-like p 26.0 1.7E+02 0.0037 32.8 6.8 81 4-85 153-241 (413)
219 PF01120 Alpha_L_fucos: Alpha- 26.0 4.1E+02 0.009 28.7 9.8 59 21-82 91-157 (346)
220 TIGR02690 resist_ArsH arsenica 25.6 7.3E+02 0.016 25.3 13.1 148 8-170 28-195 (219)
221 PRK06852 aldolase; Validated 25.5 1.3E+02 0.0028 32.3 5.6 80 30-133 121-206 (304)
222 TIGR03128 RuMP_HxlA 3-hexulose 25.5 1.5E+02 0.0033 29.1 5.9 41 29-82 68-108 (206)
223 PRK14456 ribosomal RNA large s 25.5 3.7E+02 0.0081 29.6 9.3 129 28-195 222-363 (368)
224 PF02228 Gag_p19: Major core p 25.3 32 0.0007 29.3 0.8 40 21-77 19-58 (92)
225 PRK09250 fructose-bisphosphate 25.3 90 0.0019 34.1 4.4 48 29-82 151-198 (348)
226 cd06525 GH25_Lyc-like Lyc mura 25.0 54 0.0012 32.0 2.5 87 13-105 54-148 (184)
227 PF07755 DUF1611: Protein of u 24.9 44 0.00096 35.7 2.0 58 8-80 34-91 (301)
228 TIGR03551 F420_cofH 7,8-dideme 24.9 59 0.0013 35.1 3.0 49 27-79 141-195 (343)
229 cd03789 GT1_LPS_heptosyltransf 24.6 1.3E+02 0.0028 31.0 5.4 73 12-87 127-211 (279)
230 TIGR02193 heptsyl_trn_I lipopo 24.3 1.7E+02 0.0036 30.8 6.2 73 9-85 182-265 (319)
231 cd06569 GH20_Sm-chitobiase-lik 24.0 1.8E+02 0.0039 32.8 6.7 62 21-82 19-116 (445)
232 PLN02389 biotin synthase 24.0 97 0.0021 34.2 4.5 50 27-79 178-229 (379)
233 cd06545 GH18_3CO4_chitinase Th 23.9 3.3E+02 0.0072 27.8 8.2 91 54-170 36-130 (253)
234 PF07488 Glyco_hydro_67M: Glyc 23.7 3.2E+02 0.007 29.5 7.9 132 22-173 55-189 (328)
235 PRK01060 endonuclease IV; Prov 23.6 8E+02 0.017 25.1 12.3 63 21-84 44-111 (281)
236 PRK06703 flavodoxin; Provision 23.6 4.8E+02 0.01 24.2 8.6 96 8-132 50-148 (151)
237 TIGR01108 oadA oxaloacetate de 23.5 1.7E+02 0.0038 34.2 6.6 53 18-82 85-137 (582)
238 PRK12330 oxaloacetate decarbox 23.5 1.7E+02 0.0038 33.5 6.4 53 18-82 91-143 (499)
239 PLN02231 alanine transaminase 23.3 2.6E+02 0.0057 32.3 8.0 59 20-82 252-310 (534)
240 COG0149 TpiA Triosephosphate i 23.3 1.6E+02 0.0034 30.8 5.5 49 30-84 81-129 (251)
241 PF02606 LpxK: Tetraacyldisacc 23.1 2.1E+02 0.0045 31.0 6.7 57 4-76 225-281 (326)
242 TIGR03700 mena_SCO4494 putativ 23.0 62 0.0013 35.1 2.7 50 27-79 150-204 (351)
243 cd07393 MPP_DR1119 Deinococcus 23.0 7.2E+02 0.016 25.0 10.4 115 6-133 41-160 (232)
244 KOG4039 Serine/threonine kinas 22.9 2.1E+02 0.0044 28.7 5.9 67 18-89 103-172 (238)
245 cd06416 GH25_Lys1-like Lys-1 i 22.7 5.2E+02 0.011 25.2 9.1 118 28-184 13-134 (196)
246 cd06418 GH25_BacA-like BacA is 22.6 2.7E+02 0.0058 28.2 7.0 123 22-184 50-173 (212)
247 cd07944 DRE_TIM_HOA_like 4-hyd 22.5 1.2E+02 0.0027 31.6 4.7 44 27-82 85-128 (266)
248 PRK08195 4-hyroxy-2-oxovalerat 22.2 1.4E+02 0.0031 32.3 5.3 43 28-82 92-134 (337)
249 KOG1412 Aspartate aminotransfe 22.2 2E+02 0.0043 31.2 6.0 57 21-90 130-188 (410)
250 PRK09282 pyruvate carboxylase 22.0 1.8E+02 0.0038 34.2 6.3 55 16-82 88-142 (592)
251 PRK10426 alpha-glucosidase; Pr 21.9 2E+02 0.0042 34.1 6.7 67 23-89 220-295 (635)
252 COG1891 Uncharacterized protei 21.8 36 0.00077 33.6 0.5 48 32-82 139-186 (235)
253 KOG0471 Alpha-amylase [Carbohy 21.6 1.5E+02 0.0032 34.5 5.5 63 27-89 43-114 (545)
254 KOG0805 Carbon-nitrogen hydrol 21.1 2.5E+02 0.0054 29.4 6.3 52 65-125 39-90 (337)
255 TIGR03217 4OH_2_O_val_ald 4-hy 21.0 1.7E+02 0.0036 31.8 5.4 43 27-81 90-132 (333)
256 PRK11572 copper homeostasis pr 21.0 1.2E+02 0.0026 31.5 4.2 62 10-81 59-120 (248)
257 PF06230 DUF1009: Protein of u 20.9 1.5E+02 0.0032 30.2 4.7 42 27-80 172-213 (214)
258 COG1809 (2R)-phospho-3-sulfola 20.8 1.3E+02 0.0028 30.9 4.2 55 20-84 86-140 (258)
259 PRK05265 pyridoxine 5'-phospha 20.7 2.2E+02 0.0049 29.4 6.0 49 23-89 112-161 (239)
260 COG2360 Aat Leu/Phe-tRNA-prote 20.4 1.2E+02 0.0025 30.9 3.7 106 54-166 74-205 (221)
261 KOG3833 Uncharacterized conser 20.4 1.2E+02 0.0026 32.7 4.0 48 25-78 444-491 (505)
262 COG3684 LacD Tagatose-1,6-bisp 20.3 75 0.0016 33.3 2.4 52 29-83 116-167 (306)
263 TIGR03471 HpnJ hopanoid biosyn 20.2 1.1E+02 0.0023 34.6 4.0 52 27-82 287-342 (472)
264 cd07381 MPP_CapA CapA and rela 20.1 8.9E+02 0.019 24.3 12.2 132 27-178 67-212 (239)
265 PRK14565 triosephosphate isome 20.1 2.1E+02 0.0046 29.6 5.7 49 30-84 78-126 (237)
266 PRK10964 ADP-heptose:LPS hepto 20.0 2.2E+02 0.0047 30.1 6.1 76 7-85 178-264 (322)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.2e-145 Score=1237.86 Aligned_cols=572 Identities=30% Similarity=0.492 Sum_probs=470.2
Q ss_pred CceeCCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEE
Q 006713 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vi 80 (634)
.|+|||+|++|+||+|||||+|+++|+|+|+||||+|||||+||||||+|||+||+|||+|++||.+||++|+++||+||
T Consensus 36 ~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvi 115 (840)
T PLN03059 36 AFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVH 115 (840)
T ss_pred EEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhc--cccccCCCcEEEEccccCcCCC----
Q 006713 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA--PLLYDIGGPIVMVQIENEFGSY---- 154 (634)
Q Consensus 81 lrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~--~~~~~~ggpII~~QvENEyg~~---- 154 (634)
|||||||||||++||+|.||++ .|+|++|++||+|+++|++|+++|+++|+ ++++++||||||+|||||||+|
T Consensus 116 lRpGPYIcAEw~~GGlP~WL~~-~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~ 194 (840)
T PLN03059 116 LRIGPYICAEWNFGGFPVWLKY-VPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEI 194 (840)
T ss_pred ecCCcceeeeecCCCCchhhhc-CCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceeccc
Confidence 9999999999999999999997 69999999999999999999999999995 7899999999999999999998
Q ss_pred -CCcHHHHHHHHHHHHHhcCCceEEEEecCCCcccccCCccCCCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCccce
Q 006713 155 -GDDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSE 233 (634)
Q Consensus 155 -~~~~~y~~~l~~~~~~~~G~~vpl~t~dg~~~~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~E 233 (634)
++|++||+||++++++ +|++|||||||+.. .+ ++++.|+| +. ....|.. ....+|+|++|
T Consensus 195 ~~~d~~Yl~~l~~~~~~-~Gi~VPl~t~dg~~-------~~--~~v~~t~N-g~---~~~~f~~-----~~~~~P~m~tE 255 (840)
T PLN03059 195 GAPGKAYTKWAADMAVK-LGTGVPWVMCKQED-------AP--DPVIDTCN-GF---YCENFKP-----NKDYKPKMWTE 255 (840)
T ss_pred CcchHHHHHHHHHHHHH-cCCCcceEECCCCC-------CC--ccceecCC-Cc---hhhhccc-----CCCCCCcEEec
Confidence 6899999999999999 79999999999863 22 23888888 21 1223321 12246999999
Q ss_pred eccccccccCCCCccCChHHHHHHHHHHHhcCCe-eEEEEeecCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCC
Q 006713 234 FYTGWLTHWGEKIAKTDADFTASYLEKILSQNGS-AVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGD 312 (634)
Q Consensus 234 ~~~Gwf~~Wg~~~~~~~~~~~~~~~~~~l~~~~s-~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~~TSYDY~APi~E~G~ 312 (634)
||+|||++||++++.+++++++.+++++++.++| +||||||||||||||+||+. ++|||||||||+|+|+
T Consensus 256 ~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~---------~~TSYDYdAPL~E~G~ 326 (840)
T PLN03059 256 AWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPF---------IATSYDYDAPLDEYGL 326 (840)
T ss_pred cCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCc---------cccccccCCccccccC
Confidence 9999999999999999999999999999999999 69999999999999999872 6899999999999999
Q ss_pred CChHHHHHHHHHHHhhC--CCCCCCCCC-CC-----------c--------ccccc---ceeec--c---------ccch
Q 006713 313 VDNPKFKAIRRVVEKFS--PASLPSVLP-DN-----------E--------KAGFG---PIQLQ--K---------TALL 356 (634)
Q Consensus 313 ~t~~Ky~~lr~~i~~~~--~~~~p~~P~-~~-----------~--------~~~y~---~v~~~--~---------~~~L 356 (634)
+|+|||.+||++++.+. ...++..++ .. + .+.|+ .+.++ . .++|
T Consensus 327 ~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsil 406 (840)
T PLN03059 327 PREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSIL 406 (840)
T ss_pred cchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeec
Confidence 99889999999998862 222332222 11 1 33444 34444 2 3455
Q ss_pred hhhhccc-CCCC-----------ce-------------e---cCCCccceec-------CcccceEEEEEeecCCCC---
Q 006713 357 FDLLDVL-DPAD-----------VV-------------E---SENPLSMESV-------GQMFGFLLYVSEFGGKDY--- 398 (634)
Q Consensus 357 ~d~l~~~-~~~~-----------~~-------------~---~~~p~~mE~l-------gq~~GyvlYrt~~~~~~~--- 398 (634)
.||...+ ++++ ++ . ++.|++||+| +|.+||+||||++.....
T Consensus 407 pd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~ 486 (840)
T PLN03059 407 PDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGF 486 (840)
T ss_pred ccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccc
Confidence 5554322 2111 11 2 2348999999 999999999999976532
Q ss_pred -----CcceeecccccEEEEEECCCCCCCCCCCeEEEEeeecc-cceeEec--ccccCCccEEEEEEEecCccccCCCcc
Q 006713 399 -----GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLP--NFRCGSNISLFVLVENMGRVNYGPYMF 470 (634)
Q Consensus 399 -----~~~L~i~~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~-~~~~~~p--~~~~~~~~~L~ILven~Gr~N~g~~~~ 470 (634)
..+|+|.+++|+++||||| +++|++++.. +..+.++ .....+.|+|+||||||||+|||++++
T Consensus 487 ~~~~~~~~L~v~~~~d~~~vFVNg---------~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le 557 (840)
T PLN03059 487 LKTGQYPVLTIFSAGHALHVFING---------QLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFE 557 (840)
T ss_pred cccCCCceEEEcccCcEEEEEECC---------EEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccc
Confidence 2459999999999999999 9999998754 3446654 223346789999999999999999996
Q ss_pred C-CCCcceeEEeCC-----EeccCee-EEEecCCCCCCCCCcCccchhccccchhhhhhhhccccCCCCCCCceEEEEEE
Q 006713 471 D-EKGILSSVYLGG-----KVLRGWK-MIPVPFHNLNEVPKISPILEVAYSGLIKASARKKLEHNAGNITKEPAFYVGRF 543 (634)
Q Consensus 471 ~-~KGI~g~V~L~g-----~~l~~W~-~~~l~l~~~~~l~~~~~~~~~~~s~w~~~~~~~~~~~~~~~~~~~p~fy~~~f 543 (634)
+ +|||+|+|+|+| ++|++|+ +|+++|+++.. .+....+.....|.+.+ ..+...+|+|||++|
T Consensus 558 ~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~--~i~~~~~~~~~~W~~~~--------~~~~~~p~twYK~~F 627 (840)
T PLN03059 558 TWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEAL--SLHTITGSSSVEWVEGS--------LLAQKQPLTWYKTTF 627 (840)
T ss_pred cccccccccEEEecccCCceecccCccccccCccceec--cccccCCCCCccccccc--------cccCCCCceEEEEEE
Confidence 5 999999999988 7899999 89999985432 11111111123342211 112334599999999
Q ss_pred EeCCCCCCCc-eEEeeCCCeEEEEEECCcccccccCCC--------------------------CCcceee-cCcccccc
Q 006713 544 SIDKVNQVKD-TYLSFSGWGKGIAFVNEFNLGRFWPSF--------------------------GPQCDLY-VPAPILRH 595 (634)
Q Consensus 544 ~l~~~~~~~D-t~Ld~~g~~KG~v~VNG~nlGRYW~~i--------------------------GPQ~tlY-VP~~~Lk~ 595 (634)
++|.++ | |||||++||||+|||||+||||||+ + ||||+|| ||++|||+
T Consensus 628 d~p~g~---Dpv~LDm~gmGKG~aWVNG~nIGRYW~-~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~ 703 (840)
T PLN03059 628 DAPGGN---DPLALDMSSMGKGQIWINGQSIGRHWP-AYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKP 703 (840)
T ss_pred eCCCCC---CCEEEecccCCCeeEEECCcccccccc-cccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhcc
Confidence 998764 6 9999999999999999999999995 5 9999999 99999999
Q ss_pred cccEEEEEEecCCCCccEEEEe-eccccccC
Q 006713 596 GENLVVIFELESPNSELVIHSV-NQPDFTCG 625 (634)
Q Consensus 596 G~N~IivfE~e~~~~~~~v~~~-~~~~~~~~ 625 (634)
|+|+||||||+++++. .|+|. ....-.|+
T Consensus 704 g~N~lViFEe~gg~p~-~I~~~~~~~~~~c~ 733 (840)
T PLN03059 704 SGNLLIVFEEWGGNPA-GISLVKRTTDSVCA 733 (840)
T ss_pred CCceEEEEEecCCCCC-ceEEEEeecCcccc
Confidence 9999999999998876 46664 33344554
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-127 Score=1049.23 Aligned_cols=586 Identities=35% Similarity=0.572 Sum_probs=482.5
Q ss_pred CceeCCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEE
Q 006713 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vi 80 (634)
+|++||+|++++||++||+|++|++|+++|+|||++|+|+|+||||||.|||+||+|||+|++||.+||++|+++||+||
T Consensus 26 ~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~ 105 (649)
T KOG0496|consen 26 SLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVI 105 (649)
T ss_pred ceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCCcHHH
Q 006713 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (634)
Q Consensus 81 lrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y 160 (634)
||+||||||||++||+|.||.. .|++.+|++|++|+++|++|+++|++.+++++++|||||||+||||||| .|
T Consensus 106 LRiGPyIcaEw~~GG~P~wL~~-~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG------~~ 178 (649)
T KOG0496|consen 106 LRIGPYICAEWNFGGLPWWLRN-VPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG------NY 178 (649)
T ss_pred ecCCCeEEecccCCCcchhhhh-CCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh------HH
Confidence 9999999999999999966665 7999999999999999999999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHhcCCceEEEEecCCCcccccCCccC-CCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCccceeccccc
Q 006713 161 LHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIR-GDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWL 239 (634)
Q Consensus 161 ~~~l~~~~~~~~G~~vpl~t~dg~~~~~~~~g~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~E~~~Gwf 239 (634)
..++.+..+++++-++.++++++.....+.|+... .+.+ +|.+++...+..| ++. ..+.+|+|++|+|+|||
T Consensus 179 ~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~---in~cng~~c~~~f--~~p--n~~~kP~~wtE~wtgwf 251 (649)
T KOG0496|consen 179 LRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPG---INTCNGFYCGDTF--KRP--NSPNKPLVWTENWTGWF 251 (649)
T ss_pred HHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCcc---ccccCCccchhhh--ccC--CCCCCCceecccccchh
Confidence 88999999999999999999988554444555433 3323 3333222222222 222 23467999999999999
Q ss_pred cccCCCCccCChHHHHHHHHHHHhcC-CeeEEEEeecCCCCCCCCC---CCCCCC------------CCCCCCcccccCC
Q 006713 240 THWGEKIAKTDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNG---ANTGNT------------ESDYQPDLTSYDY 303 (634)
Q Consensus 240 ~~Wg~~~~~~~~~~~~~~~~~~l~~~-~s~n~YM~hGGTNfG~~~G---a~~~~~------------~~~~~p~~TSYDY 303 (634)
++||++++.+++++++..+..+++.+ +++||||+|||||||++|| |+.... .+.+.+.+|||||
T Consensus 252 ~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~dgl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 252 THWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLDGLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred hhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccchhhcCCCccccccchhhhhh
Confidence 99999999999999999999999988 7789999999999999999 653211 1346789999999
Q ss_pred CCccccCCCCChHHHHHHH----HHHHhhCCCCCCCCCCCCccccccceeeccccchhhhhccc-CCCC----ceecCCC
Q 006713 304 DAPIKESGDVDNPKFKAIR----RVVEKFSPASLPSVLPDNEKAGFGPIQLQKTALLFDLLDVL-DPAD----VVESENP 374 (634)
Q Consensus 304 ~APi~E~G~~t~~Ky~~lr----~~i~~~~~~~~p~~P~~~~~~~y~~v~~~~~~~L~d~l~~~-~~~~----~~~~~~p 374 (634)
+||+.|+|+++.+||.++| ++|+.+.+.+.+++|-+.++..+++++++ .|.||...+ ++++ ...+.+|
T Consensus 332 ~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~sls---ilpdck~~~~nta~~~~~~~~~~e~ 408 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLS---ILPDCKTVVYNTAKVMAQWISFTEP 408 (649)
T ss_pred cCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEE---echhhcchhhhccccccccccccCC
Confidence 9999999997667999999 89999999999999999999999998875 566666644 3332 2457899
Q ss_pred ccceecCcccceEEEEEeecCCCC-Ccceeec-ccccEEEEEECCCCCCCCCCCeEEEEeeecc-cceeEe--cccccCC
Q 006713 375 LSMESVGQMFGFLLYVSEFGGKDY-GSSLLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSL--PNFRCGS 449 (634)
Q Consensus 375 ~~mE~lgq~~GyvlYrt~~~~~~~-~~~L~i~-~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~-~~~~~~--p~~~~~~ 449 (634)
+++|..+|.+|+++|++.++.+.+ ...|+|. +++|++|||||| +++|++++.. +..+.+ +.....+
T Consensus 409 ~~~~~~~~~~~~ll~~~~~t~d~sd~t~~~i~ls~g~~~hVfvNg---------~~~G~~~g~~~~~~~~~~~~~~l~~g 479 (649)
T KOG0496|consen 409 IPSEAVGQSFGGLLEQTNLTKDKSDTTSLKIPLSLGHALHVFVNG---------EFAGSLHGNNEKIKLNLSQPVGLKAG 479 (649)
T ss_pred CccccccCcceEEEEEEeeccccCCCceEeecccccceEEEEECC---------EEeeeEeccccceeEEeecccccccC
Confidence 999999999999999998876533 4568898 999999999999 9999999864 333333 3333457
Q ss_pred ccEEEEEEEecCccccCCCccCCCCcceeEEeCCEeccCeeEEE--ecCCCCCCCCCcCccchhccccchhhhhhhhccc
Q 006713 450 NISLFVLVENMGRVNYGPYMFDEKGILSSVYLGGKVLRGWKMIP--VPFHNLNEVPKISPILEVAYSGLIKASARKKLEH 527 (634)
Q Consensus 450 ~~~L~ILven~Gr~N~g~~~~~~KGI~g~V~L~g~~l~~W~~~~--l~l~~~~~l~~~~~~~~~~~s~w~~~~~~~~~~~ 527 (634)
.|+|+|||||+||+|||.+..+.|||+|+|+|+|..+.+|+.++ ++|+.+.. ...........+|.+.+
T Consensus 480 ~n~l~iL~~~~G~~n~G~~e~~~~Gi~g~v~l~g~~~l~~~~w~~~~gl~ge~~--~~~~~~~~~~v~w~~~~------- 550 (649)
T KOG0496|consen 480 ENKLALLSENVGLPNYGHFENDFKGILGPVYLNGLIDLTWTKWPYKVGLKGEKL--GLHTEEGSSKVKWKKLS------- 550 (649)
T ss_pred cceEEEEEEecCCCCcCcccccccccccceEEeeeeccceeecceecccccchh--hccccccccccceeecc-------
Confidence 89999999999999999444569999999999999666776655 44443321 11111111223343211
Q ss_pred cCCCCCCCceEEEEEEEeCCCCCCCceEEeeCCCeEEEEEECCcccccccCCCCCcceeecCcccccccccEEEEEEecC
Q 006713 528 NAGNITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGENLVVIFELES 607 (634)
Q Consensus 528 ~~~~~~~~p~fy~~~f~l~~~~~~~Dt~Ld~~g~~KG~v~VNG~nlGRYW~~iGPQ~tlYVP~~~Lk~G~N~IivfE~e~ 607 (634)
.....++.+||+ +|++|++. .||+|||.|||||+|||||+|||||||++|||++||||++|||++.|.|||||||+
T Consensus 551 -~~~~k~P~~w~k-~f~~p~g~--~~t~Ldm~g~GKG~vwVNG~niGRYW~~~G~Q~~yhvPr~~Lk~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 551 -NTATKQPLTWYK-TFDIPSGS--EPTALDMNGWGKGQVWVNGQNIGRYWPSFGPQRTYHVPRSWLKPSGNLLVVFEEEG 626 (649)
T ss_pred -CcccCCCeEEEE-EecCCCCC--CCeEEecCCCcceEEEECCcccccccCCCCCceEEECcHHHhCcCCceEEEEEecc
Confidence 112224456777 99999874 69999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeecccc-ccCc
Q 006713 608 PNSELVIHSVNQPDF-TCGS 626 (634)
Q Consensus 608 ~~~~~~v~~~~~~~~-~~~~ 626 (634)
+++. .++|++.+.. .|+.
T Consensus 627 ~~p~-~i~~~~~~~~~~~~~ 645 (649)
T KOG0496|consen 627 GDPN-GISFVTRPVLSTCAY 645 (649)
T ss_pred CCCc-cceEEEeEeeeEeee
Confidence 7665 5888777655 5543
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.1e-94 Score=764.16 Aligned_cols=318 Identities=50% Similarity=0.940 Sum_probs=254.6
Q ss_pred CceeCCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEE
Q 006713 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vi 80 (634)
+|+|||||++|+|||+||+|+|+++|+++|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCCcHHH
Q 006713 81 LRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEY 160 (634)
Q Consensus 81 lrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y 160 (634)
|||||||||||++||+|.||++ .+++++|++||.|+++|++|+++|+++++++|+++||||||+|||||||.++++++|
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~-~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~~~~~Y 159 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLR-KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYGTDRAY 159 (319)
T ss_dssp EEEES---TTBGGGG--GGGGG-STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTSS-HHH
T ss_pred ecccceecccccchhhhhhhhc-cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCcccHhH
Confidence 9999999999999999999998 579999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHhcCCc-eEEEEecCCCcccccCCccCCCeeeeeecCCCCCCCchhHHHHHHhcCCCCCCCccceeccccc
Q 006713 161 LHHLVTLARAHLGKD-IILYTTDGGTRETLLKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQFNAPGKSPPLSSEFYTGWL 239 (634)
Q Consensus 161 ~~~l~~~~~~~~G~~-vpl~t~dg~~~~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~P~~~~E~~~Gwf 239 (634)
|+.|++++++ .|++ ++++|+|++......++.+++..++.+.+|++...+...|..++..+ +++|.|++|||+|||
T Consensus 160 ~~~l~~~~~~-~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~P~~~~E~~~Gwf 236 (319)
T PF01301_consen 160 MEALKDAYRD-WGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQ--PNQPLMCTEFWGGWF 236 (319)
T ss_dssp HHHHHHHHHH-TT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHH--TTS--EEEEEESS--
T ss_pred HHHHHHHHHH-hhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcC--CCCCeEEEEeccccc
Confidence 9999999999 5777 88899999876667777887767999999998744445565555553 367999999999999
Q ss_pred cccCCCCccCChHHHHHHHHHHHhcCCeeEEEEeecCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCChHHHH
Q 006713 240 THWGEKIAKTDADFTASYLEKILSQNGSAVLYMAHGGTNFGFYNGANTGNTESDYQPDLTSYDYDAPIKESGDVDNPKFK 319 (634)
Q Consensus 240 ~~Wg~~~~~~~~~~~~~~~~~~l~~~~s~n~YM~hGGTNfG~~~Ga~~~~~~~~~~p~~TSYDY~APi~E~G~~t~~Ky~ 319 (634)
++||.+++.++++.++..+++++++++|+||||+|||||||+++|++... +|++|||||+|||+|+|++|+ ||+
T Consensus 237 ~~WG~~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~~-----~p~~TSYDY~ApI~E~G~~~~-Ky~ 310 (319)
T PF01301_consen 237 DHWGGPHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYYG-----QPDITSYDYDAPIDEYGQLTP-KYY 310 (319)
T ss_dssp -BTTS--HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETTT-----EEB-SB--TT-SB-TTS-B-H-HHH
T ss_pred cccCCCCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCCC-----CCCcccCCcCCccCcCCCcCH-HHH
Confidence 99999999999999999999999999999999999999999999998532 689999999999999999995 999
Q ss_pred HHHHHHHhh
Q 006713 320 AIRRVVEKF 328 (634)
Q Consensus 320 ~lr~~i~~~ 328 (634)
+||+++++|
T Consensus 311 ~lr~l~~~~ 319 (319)
T PF01301_consen 311 ELRRLHQKY 319 (319)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHhcC
Confidence 999999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-46 Score=417.59 Aligned_cols=544 Identities=21% Similarity=0.216 Sum_probs=338.9
Q ss_pred CceeCCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCceeecchhhHHHHHHHHHHcCceE
Q 006713 1 MFRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~-yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~V 79 (634)
.|++||+|++++||++||+|||++.|.+||++||++|+|+|++ |+.||+|||++|+|||+ .+|.. ||++|++.||+|
T Consensus 7 ~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~~~Gl~v 84 (673)
T COG1874 7 SFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAYKAGLYV 84 (673)
T ss_pred ceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHHhcCceE
Confidence 3789999999999999999999999999999999999999999 99999999999999999 67888 999999999999
Q ss_pred EecCCC-cccceecCCCCcccccccCCCeeec---------cCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccc
Q 006713 80 MLRPGP-YICAEWDLGGFPAWLLAKKPALKLR---------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (634)
Q Consensus 80 ilrpgP-yi~aEw~~Gg~P~Wl~~~~p~~~~R---------~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN 149 (634)
|||||| ..|.+|..+++|+||.. ++...+| .++|.|++++++ |+++|+++.+++|++||+|||+|
T Consensus 85 il~t~P~g~~P~Wl~~~~PeiL~~-~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~irer~~~~~~~v~~w~~dn 159 (673)
T COG1874 85 ILRTGPTGAPPAWLAKKYPEILAV-DENGRVRSDGARENICPVSPVYREYLDR----ILQQIRERLYGNGPAVITWQNDN 159 (673)
T ss_pred EEecCCCCCCchHHhcCChhheEe-cCCCcccCCCcccccccccHHHHHHHHH----HHHHHHHHHhccCCceeEEEccC
Confidence 999999 89999999999999887 3443333 357789988888 77777777789999999999999
Q ss_pred CcCCCC-----CcHHHHHHHHHHHHHhcCCceEEEEecCCCcccccCCccCCCeeeeeec-CCCCCCCchhHH-HHHHhc
Q 006713 150 EFGSYG-----DDKEYLHHLVTLARAHLGKDIILYTTDGGTRETLLKGTIRGDAVFAAVD-FSTGAEPWPIFK-LQKQFN 222 (634)
Q Consensus 150 Eyg~~~-----~~~~y~~~l~~~~~~~~G~~vpl~t~dg~~~~~~~~g~~~~~~~~~~~~-f~~~~~~~~~~~-~~~~~~ 222 (634)
|||++. |+..+..||++.+-. +-+.+..+...+.+++...-+...+.+ ++. ++.+... -..+|.
T Consensus 160 eY~~~~~~~~~~~~~f~~wLk~~yg~-------l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e--~~~~~~~ld~~~f~ 230 (673)
T COG1874 160 EYGGHPCYCDYCQAAFRLWLKKGYGS-------LDNLNEAWGTSFWSHTYKDFDEIMSPNPFGE--LPLPGLYLDYRRFE 230 (673)
T ss_pred ccCCccccccccHHHHHHHHHhCcch-------HHhhhhhhhhhhcccccccHHhhcCCCCccc--cCCccchhhHhhhh
Confidence 999843 556666677666532 222233222233344333211111122 222 1111110 111221
Q ss_pred C-C-CCCCCccceeccccc-cccCCCCccCC-hHHHHHHHHHHHhcCCeeEEEEeecCCCCC------CCCCCCCC-CCC
Q 006713 223 A-P-GKSPPLSSEFYTGWL-THWGEKIAKTD-ADFTASYLEKILSQNGSAVLYMAHGGTNFG------FYNGANTG-NTE 291 (634)
Q Consensus 223 ~-~-~~~P~~~~E~~~Gwf-~~Wg~~~~~~~-~~~~~~~~~~~l~~~~s~n~YM~hGGTNfG------~~~Ga~~~-~~~ 291 (634)
. + -..+..+.|.+-+|| +.|..+..... .+.-+..+++.+....+-||||+|+|++|+ |.+|+.-. ...
T Consensus 231 ~e~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~swdny~~~~~~~~~~~~~h~l~r~~~~~~~~~~ 310 (673)
T COG1874 231 SEQILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASWDNYPAWHRGRDFTKFIHDLFRNGKQGQPFWL 310 (673)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhhhhhhhhccccchhhhhHHHHHhhccCCceee
Confidence 1 0 022566788888999 88877665544 555566677777766667999999999999 88888711 111
Q ss_pred CCCCCcccccCCCCccccCCCCChHHHH--HHHHHHHhhCCCCCCCCCCCCccccccceeeccccchhhhhcccCCCCce
Q 006713 292 SDYQPDLTSYDYDAPIKESGDVDNPKFK--AIRRVVEKFSPASLPSVLPDNEKAGFGPIQLQKTALLFDLLDVLDPADVV 369 (634)
Q Consensus 292 ~~~~p~~TSYDY~APi~E~G~~t~~Ky~--~lr~~i~~~~~~~~p~~P~~~~~~~y~~v~~~~~~~L~d~l~~~~~~~~~ 369 (634)
....|..|++++.+.+.+.|..+-+.+. +...-.-.|.....++-|.......+-+=.+.+...+++.+..+.
T Consensus 311 me~~P~~vn~~~~n~~~~~G~~~l~s~~~~A~g~~~v~yf~~r~s~~~~e~~h~~v~~~v~~~~~~~~~ev~~vg----- 385 (673)
T COG1874 311 MEQLPSVVNWALYNKLKRPGALRLPSLQAVAHGADNVIYFQWRQSPSPREKSHDGVISPVLSENTRLFREVAAVG----- 385 (673)
T ss_pred ccCCcchhhhhhccCCCCCccccccccccccccCceEEEEEeecCCChHhhccCcccccccCccccccchhhhhh-----
Confidence 1245899999999999999994322221 111111111111111111110000000000122233333322221
Q ss_pred ecCCCcc--ceecCcccceEEEEEeecCCCCCcceeecccccEEEEEECCCCCCCCCCCeEEEEeeecc-cceeEecccc
Q 006713 370 ESENPLS--MESVGQMFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFR 446 (634)
Q Consensus 370 ~~~~p~~--mE~lgq~~GyvlYrt~~~~~~~~~~L~i~~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~-~~~~~~p~~~ 446 (634)
+.-.+++ ||..++.+++++|..+..=. .......+..++.+.+.-. ++.-.+-+.. +..+..+.+.
T Consensus 386 ~~l~~~~~~~~~~~~a~va~~~d~E~~Wa--~~~~~~~~~~~~~Y~~~~~---------~~~~~l~~~~i~vdvi~~~~~ 454 (673)
T COG1874 386 EELKSLPDVMEARVQAYVAILFDYESRWA--FEDEDGGESSALRYPFGVL---------HLYEALIETGIPVDVILEGSE 454 (673)
T ss_pred HhhhccccccccccccceeEEeecccccc--cccccccccccccchhhhh---------hhHHHHHhhCCceeEecCccc
Confidence 1122333 88889999999996654311 0111112222333333222 1211111110 1111112212
Q ss_pred cCCccEEEE---EEEecCccccCCCccC-----CCCcceeEEeCCEeccCeeEEEecCCCCCCCCCcCccchhccccchh
Q 006713 447 CGSNISLFV---LVENMGRVNYGPYMFD-----EKGILSSVYLGGKVLRGWKMIPVPFHNLNEVPKISPILEVAYSGLIK 518 (634)
Q Consensus 447 ~~~~~~L~I---Lven~Gr~N~g~~~~~-----~KGI~g~V~L~g~~l~~W~~~~l~l~~~~~l~~~~~~~~~~~s~w~~ 518 (634)
..+-..|.+ .++++++++.+....+ ..|++.++......+..|.-.+.+.+.. +. |
T Consensus 455 ~~~y~~L~~p~l~~~~~~~~~r~~~f~~~gG~~v~g~~sG~~~e~~~~~~~~~~g~~~d~i-------~~-------~-- 518 (673)
T COG1874 455 LDGYKLLIVPVLYIVNSERVDRAKKFVENGGTLVLGPRSGIVNEHDFLVTGGYPGLLRDLI-------GI-------W-- 518 (673)
T ss_pred ccCceEEEEeeeeccchhhHhhHHHHHhcCCeEEEeeecccccchheeecCCCCcchHHhc-------Cc-------c--
Confidence 223445655 7899999998765543 3444444444433344444333332311 00 0
Q ss_pred hhhhhhccccCCCCCCCceEEEEEEEeCCCCCCCceEEeeCCCeEEEEEECCcccccccCCCCCcceeecCccccccccc
Q 006713 519 ASARKKLEHNAGNITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGEN 598 (634)
Q Consensus 519 ~~~~~~~~~~~~~~~~~p~fy~~~f~l~~~~~~~Dt~Ld~~g~~KG~v~VNG~nlGRYW~~iGPQ~tlYVP~~~Lk~G~N 598 (634)
.+...+.+.+.+-++.... .|++++++.|.+++=+.|+..||||| ..+++-..+|++.++++|.+
T Consensus 519 ----------~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~l~~~~-~~~~~~~~~v~~~~~~~g~~ 583 (673)
T COG1874 519 ----------VGEVDQLPPNEVNVVVRNG----KDTTYGLKLWRATVDGEGGTVLARFR-EDGYAGGPAVTRRWYGGGKA 583 (673)
T ss_pred ----------cccccccChhHhhhheecc----CcceeccccceeeeeccCCeEEEEEe-ccCcCCCcccchhhhcCcce
Confidence 0111234566555555543 28999999999999999999999999 89999999999999999999
Q ss_pred EEEEEEecC
Q 006713 599 LVVIFELES 607 (634)
Q Consensus 599 ~IivfE~e~ 607 (634)
..++++..+
T Consensus 584 ~~l~~~~~g 592 (673)
T COG1874 584 YYLGFRTSG 592 (673)
T ss_pred eEEEeccCc
Confidence 999998765
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.87 E-value=3.8e-22 Score=216.29 Aligned_cols=139 Identities=27% Similarity=0.378 Sum_probs=109.2
Q ss_pred eecCCCCCHhhHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecC
Q 006713 15 DLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDL 93 (634)
Q Consensus 15 ~~hy~r~p~~~W~~~l~~~k~~G~N~V~~-yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~ 93 (634)
++++..+|++.|+++|++||++|||+|++ .+.|+.+||+||+|||+. ||++|++|+++||+|||+.. .
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~---lD~~l~~a~~~Gi~viL~~~--------~ 69 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSW---LDRVLDLAAKHGIKVILGTP--------T 69 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HH---HHHHHHHHHCTT-EEEEEEC--------T
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHH---HHHHHHHHHhccCeEEEEec--------c
Confidence 35677899999999999999999999997 678999999999999999 99999999999999999943 6
Q ss_pred CCCcccccccCCCeeec----------------cCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC---C
Q 006713 94 GGFPAWLLAKKPALKLR----------------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS---Y 154 (634)
Q Consensus 94 Gg~P~Wl~~~~p~~~~R----------------~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~---~ 154 (634)
+..|.||.+++|++... .++|.|++++++++++|+++++. .+.||+|||+||++. |
T Consensus 70 ~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-----~p~vi~~~i~NE~~~~~~~ 144 (374)
T PF02449_consen 70 AAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-----HPAVIGWQIDNEPGYHRCY 144 (374)
T ss_dssp TTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-----TTTEEEEEECCSTTCTS--
T ss_pred cccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-----cceEEEEEeccccCcCcCC
Confidence 67999999888886431 35889999999988888888765 468999999999975 2
Q ss_pred C--CcHHHHHHHHHHHH
Q 006713 155 G--DDKEYLHHLVTLAR 169 (634)
Q Consensus 155 ~--~~~~y~~~l~~~~~ 169 (634)
+ +.+.|.+||+++|.
T Consensus 145 ~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 145 SPACQAAFRQWLKEKYG 161 (374)
T ss_dssp SHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhC
Confidence 2 45667777777765
No 6
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.29 E-value=5.6e-12 Score=114.11 Aligned_cols=71 Identities=32% Similarity=0.576 Sum_probs=54.8
Q ss_pred CCCceEEEEEEEeCCCCCCCceEEe-----eCCCeEEEEEECCcccccccCCCCCcceeecCcccccccccEEEE-EEec
Q 006713 533 TKEPAFYVGRFSIDKVNQVKDTYLS-----FSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGENLVVI-FELE 606 (634)
Q Consensus 533 ~~~p~fy~~~f~l~~~~~~~Dt~Ld-----~~g~~KG~v~VNG~nlGRYW~~iGPQ~tlYVP~~~Lk~G~N~Iiv-fE~e 606 (634)
..+..|||++|.... .|+.|. ...+.+++|||||++|||||+.+|||++|+||.++|+.++|.|+| .+.+
T Consensus 33 ~~g~~~Yrg~F~~~~----~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~il~~~n~v~~vl~~~~ 108 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTG----QDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGILKYGNNVLVVLWDNM 108 (111)
T ss_dssp SSCEEEEEEEEETTT----EEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTTBTTCEEEEEEEEE-S
T ss_pred CCCCEEEEEEEeCCC----cceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCceeecCCCEEEEEEEeCC
Confidence 467999999996422 355554 256899999999999999999999999999999999997555544 4544
Q ss_pred C
Q 006713 607 S 607 (634)
Q Consensus 607 ~ 607 (634)
+
T Consensus 109 g 109 (111)
T PF13364_consen 109 G 109 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 7
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.27 E-value=1.7e-10 Score=121.52 Aligned_cols=136 Identities=24% Similarity=0.314 Sum_probs=97.5
Q ss_pred CceeCCEeeEEEEEeecCC------CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHH
Q 006713 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~------r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~ 74 (634)
.|+|||||++|-|.+.|.. .++.+.|+++|++||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 7 ~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~~~~cD~ 70 (298)
T PF02836_consen 7 GFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRFYDLCDE 70 (298)
T ss_dssp EEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHHHHHHHH
T ss_pred EEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHHHHHHhh
Confidence 4899999999999999963 267999999999999999999999 66665 3799999999
Q ss_pred cCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCC
Q 006713 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (634)
Q Consensus 75 ~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (634)
+||.|+..+.=.-++.|..-| .......+|.+.+.+.+-+++++.+.+.| +.||||=+-||-
T Consensus 71 ~GilV~~e~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~NH-----PSIi~W~~gNE~--- 132 (298)
T PF02836_consen 71 LGILVWQEIPLEGHGSWQDFG----------NCNYDADDPEFRENAEQELREMVRRDRNH-----PSIIMWSLGNES--- 132 (298)
T ss_dssp HT-EEEEE-S-BSCTSSSSTS----------CTSCTTTSGGHHHHHHHHHHHHHHHHTT------TTEEEEEEEESS---
T ss_pred cCCEEEEeccccccCccccCC----------ccccCCCCHHHHHHHHHHHHHHHHcCcCc-----CchheeecCccC---
Confidence 999999874210111221111 01234578999998888888888887654 699999999999
Q ss_pred CCcHHHHHHHHHHHHHh
Q 006713 155 GDDKEYLHHLVTLARAH 171 (634)
Q Consensus 155 ~~~~~y~~~l~~~~~~~ 171 (634)
....+++.|.+++++.
T Consensus 133 -~~~~~~~~l~~~~k~~ 148 (298)
T PF02836_consen 133 -DYREFLKELYDLVKKL 148 (298)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -ccccchhHHHHHHHhc
Confidence 4556788888888884
No 8
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.12 E-value=8.9e-09 Score=118.82 Aligned_cols=142 Identities=21% Similarity=0.167 Sum_probs=100.0
Q ss_pred CceeCCEeeEEEEEeecCC------CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHH
Q 006713 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~------r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~ 74 (634)
.|+|||+|+++-|.+.|.. .++.+.|+++|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 284 ~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~~~~~~cD~ 347 (604)
T PRK10150 284 QFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SEEMLDLADR 347 (604)
T ss_pred EEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CHHHHHHHHh
Confidence 3899999999999999853 266889999999999999999999 46664 2789999999
Q ss_pred cCceEEecCCCcccceecCCCCccccc-------ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 006713 75 LDLLVMLRPGPYICAEWDLGGFPAWLL-------AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (634)
Q Consensus 75 ~gL~VilrpgPyi~aEw~~Gg~P~Wl~-------~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Qv 147 (634)
+||+|+.... ++ |+..|.. +..+.......+|.+.++.++-+++++.+.+ |++.||||-+
T Consensus 348 ~GllV~~E~p--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~-----NHPSIi~Ws~ 414 (604)
T PRK10150 348 HGIVVIDETP--AV------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK-----NHPSVVMWSI 414 (604)
T ss_pred cCcEEEEecc--cc------cccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-----CCceEEEEee
Confidence 9999998742 11 1111211 1011111123456777766665666666554 5579999999
Q ss_pred ccCcCCCC-CcHHHHHHHHHHHHHh
Q 006713 148 ENEFGSYG-DDKEYLHHLVTLARAH 171 (634)
Q Consensus 148 ENEyg~~~-~~~~y~~~l~~~~~~~ 171 (634)
-||...-. ....+++.|.+.+|+.
T Consensus 415 gNE~~~~~~~~~~~~~~l~~~~k~~ 439 (604)
T PRK10150 415 ANEPASREQGAREYFAPLAELTRKL 439 (604)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhh
Confidence 99975322 3456778888888874
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.10 E-value=2.3e-09 Score=110.36 Aligned_cols=157 Identities=22% Similarity=0.380 Sum_probs=108.4
Q ss_pred eCCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCC-CCCCc-eeecchhhHHHHHHHHHHcCceEEe
Q 006713 4 KDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-PKPGK-LVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 4 ~dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hE-p~~G~-~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
.+|+++.+.+-+.|... ...-++++++||++|+|+||+.|.|...+ +.|+. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999321 12789999999999999999999995554 67764 7767777899999999999999999
Q ss_pred cCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCCc----
Q 006713 82 RPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDD---- 157 (634)
Q Consensus 82 rpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~---- 157 (634)
. +++ .|.|...... -...+...+....+++.|+.+++ +..+|++++|-||......+
T Consensus 81 d----~h~------~~~w~~~~~~----~~~~~~~~~~~~~~~~~la~~y~-----~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 81 D----LHN------APGWANGGDG----YGNNDTAQAWFKSFWRALAKRYK-----DNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp E----EEE------STTCSSSTST----TTTHHHHHHHHHHHHHHHHHHHT-----TTTTTEEEESSSSGCSTTSTTTTS
T ss_pred E----ecc------Cccccccccc----cccchhhHHHHHhhhhhhccccC-----CCCcEEEEEecCCccccCCccccc
Confidence 8 332 2777433111 01222233333444445555554 34589999999999875332
Q ss_pred -------HHHHHHHHHHHHHhcCCceEEEEec
Q 006713 158 -------KEYLHHLVTLARAHLGKDIILYTTD 182 (634)
Q Consensus 158 -------~~y~~~l~~~~~~~~G~~vpl~t~d 182 (634)
.++++.+.+.+|+ .+-+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~-~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRA-ADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHH-TTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHh-cCCcceeecCC
Confidence 3566777777787 56666655444
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1.6e-07 Score=110.35 Aligned_cols=112 Identities=26% Similarity=0.356 Sum_probs=90.0
Q ss_pred CceeCCEeeEEEEEeecCC-----CC-CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHH
Q 006713 1 MFRKDGEPFRIIGGDLHYF-----RI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~-----r~-p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~ 74 (634)
.|.|||||+++-|..-|.+ |. ..+.-+++|++||++|+|+|||- |-|+ =..|+++|.+
T Consensus 292 ~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~~~ydLcDe 355 (808)
T COG3250 292 LLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SEEFYDLCDE 355 (808)
T ss_pred eEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CHHHHHHHHH
Confidence 4899999999999999975 33 35559999999999999999993 8887 4899999999
Q ss_pred cCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC
Q 006713 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (634)
Q Consensus 75 ~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (634)
+||+||-.+ ..+|- |. | +|+.|++.+..=+++++.+.+. ++.||||=+.||-|.
T Consensus 356 lGllV~~Ea----~~~~~--~~--------~------~~~~~~k~~~~~i~~mver~kn-----HPSIiiWs~gNE~~~ 409 (808)
T COG3250 356 LGLLVIDEA----MIETH--GM--------P------DDPEWRKEVSEEVRRMVERDRN-----HPSIIIWSLGNESGH 409 (808)
T ss_pred hCcEEEEec----chhhc--CC--------C------CCcchhHHHHHHHHHHHHhccC-----CCcEEEEeccccccC
Confidence 999999993 22321 11 2 7888888887766667766654 579999999999875
No 11
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.66 E-value=2.7e-07 Score=112.14 Aligned_cols=135 Identities=18% Similarity=0.212 Sum_probs=95.2
Q ss_pred CceeCCEeeEEEEEeecCC-----C-CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHH
Q 006713 1 MFRKDGEPFRIIGGDLHYF-----R-ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~-----r-~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~ 74 (634)
.|+|||+|+++-|.+.|.. | ++++.|+++|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 326 ~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~~fydlcDe 389 (1021)
T PRK10340 326 LFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DPRFYELCDI 389 (1021)
T ss_pred EEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHHHHHHHHH
Confidence 3899999999999998843 2 57899999999999999999999 36564 3789999999
Q ss_pred cCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCC
Q 006713 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (634)
Q Consensus 75 ~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (634)
+||+|+-.. |..|..|.. .. +...-+++|.+.++..+=+++++.+.+ |++.||||-+-||-+.
T Consensus 390 ~GllV~dE~-~~e~~g~~~-------~~---~~~~~~~~p~~~~~~~~~~~~mV~Rdr-----NHPSIi~WslGNE~~~- 452 (1021)
T PRK10340 390 YGLFVMAET-DVESHGFAN-------VG---DISRITDDPQWEKVYVDRIVRHIHAQK-----NHPSIIIWSLGNESGY- 452 (1021)
T ss_pred CCCEEEECC-cccccCccc-------cc---ccccccCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc-
Confidence 999999984 333322211 00 001124677776554443444555554 5679999999999763
Q ss_pred CCcHHHHHHHHHHHHHh
Q 006713 155 GDDKEYLHHLVTLARAH 171 (634)
Q Consensus 155 ~~~~~y~~~l~~~~~~~ 171 (634)
+. .++.+.+.+|+.
T Consensus 453 g~---~~~~~~~~~k~~ 466 (1021)
T PRK10340 453 GC---NIRAMYHAAKAL 466 (1021)
T ss_pred cH---HHHHHHHHHHHh
Confidence 22 346677777773
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.64 E-value=2.9e-07 Score=111.69 Aligned_cols=131 Identities=21% Similarity=0.314 Sum_probs=94.1
Q ss_pred CceeCCEeeEEEEEeecCC------CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHH
Q 006713 1 MFRKDGEPFRIIGGDLHYF------RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK 74 (634)
Q Consensus 1 ~f~~dG~~~~~~~g~~hy~------r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~ 74 (634)
.|+|||+|+++-|...|.. +++++.++++|+.||++|+|+||+ .|-|. -.+|+++|.+
T Consensus 342 ~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p~fydlcDe 405 (1027)
T PRK09525 342 LLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HPLWYELCDR 405 (1027)
T ss_pred EEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHHHHHHHHH
Confidence 3899999999999999842 467999999999999999999999 45554 2789999999
Q ss_pred cCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCC
Q 006713 75 LDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 154 (634)
Q Consensus 75 ~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~ 154 (634)
+||+|+-... . | ..|-.|.. .+ .+||.|.+++..=+++++.+.+ |++.||||=+-||-+.
T Consensus 406 ~GilV~dE~~-~---e-~hg~~~~~--------~~-~~dp~~~~~~~~~~~~mV~Rdr-----NHPSIi~WSlgNE~~~- 465 (1027)
T PRK09525 406 YGLYVVDEAN-I---E-THGMVPMN--------RL-SDDPRWLPAMSERVTRMVQRDR-----NHPSIIIWSLGNESGH- 465 (1027)
T ss_pred cCCEEEEecC-c---c-ccCCcccc--------CC-CCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCccCCCc-
Confidence 9999998842 1 1 01111210 01 3578887766654555555554 5579999999999763
Q ss_pred CCcHHHHHHHHHHHHH
Q 006713 155 GDDKEYLHHLVTLARA 170 (634)
Q Consensus 155 ~~~~~y~~~l~~~~~~ 170 (634)
+ .....+.+.+|+
T Consensus 466 g---~~~~~l~~~~k~ 478 (1027)
T PRK09525 466 G---ANHDALYRWIKS 478 (1027)
T ss_pred C---hhHHHHHHHHHh
Confidence 2 234556666666
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.53 E-value=3.5e-06 Score=87.01 Aligned_cols=113 Identities=20% Similarity=0.359 Sum_probs=86.2
Q ss_pred CCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHH
Q 006713 47 WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGV 126 (634)
Q Consensus 47 W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~ 126 (634)
|...||++|+|||+. .+++++.|+++||.|.-. +. -|-. ..|.|+... + .+..++++++|+++
T Consensus 3 W~~~ep~~G~~n~~~---~D~~~~~a~~~gi~v~gH--~l---~W~~-~~P~W~~~~-~-------~~~~~~~~~~~i~~ 65 (254)
T smart00633 3 WDSTEPSRGQFNFSG---ADAIVNFAKENGIKVRGH--TL---VWHS-QTPDWVFNL-S-------KETLLARLENHIKT 65 (254)
T ss_pred cccccCCCCccChHH---HHHHHHHHHHCCCEEEEE--EE---eecc-cCCHhhhcC-C-------HHHHHHHHHHHHHH
Confidence 899999999999999 899999999999998432 11 2433 689998752 2 34567888888888
Q ss_pred HHHHhccccccCCCcEEEEccccCcCCCC------------CcHHHHHHHHHHHHHhcCCceEEEEecCC
Q 006713 127 LLPKIAPLLYDIGGPIVMVQIENEFGSYG------------DDKEYLHHLVTLARAHLGKDIILYTTDGG 184 (634)
Q Consensus 127 l~~~l~~~~~~~ggpII~~QvENEyg~~~------------~~~~y~~~l~~~~~~~~G~~vpl~t~dg~ 184 (634)
++.+++ |.|..|+|-||.-..+ ...+|+...-+.+|+ ..-++.|+.+|-.
T Consensus 66 v~~ry~-------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~-~~P~a~l~~Ndy~ 127 (254)
T smart00633 66 VVGRYK-------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYARE-ADPDAKLFYNDYN 127 (254)
T ss_pred HHHHhC-------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHH-hCCCCEEEEeccC
Confidence 888873 5688999999963211 124788888888888 4568999999854
No 14
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.28 E-value=4.1e-06 Score=75.88 Aligned_cols=79 Identities=28% Similarity=0.356 Sum_probs=57.0
Q ss_pred ccceecCcccceEEEEEeecCCCC--Ccc-eeec-ccccEEEEEECCCCCCCCCCCeEEEEeee-cc-cceeEecc-ccc
Q 006713 375 LSMESVGQMFGFLLYVSEFGGKDY--GSS-LLIS-KVHDRAQVFISCPTEDNSGRPTYVGTIER-WS-NRALSLPN-FRC 447 (634)
Q Consensus 375 ~~mE~lgq~~GyvlYrt~~~~~~~--~~~-L~i~-~~~D~a~Vfvng~~~~~~~~~~~~G~~~~-~~-~~~~~~p~-~~~ 447 (634)
+.+..+|.+.|++|||++|..... ... |.+. +.+.+++||||| .++|+... .. +.+|.+|. ...
T Consensus 25 l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG---------~~~G~~~~~~g~q~tf~~p~~il~ 95 (111)
T PF13364_consen 25 LYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNG---------WFLGSYWPGIGPQTTFSVPAGILK 95 (111)
T ss_dssp TCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETT---------EEEEEEETTTECCEEEEE-BTTBT
T ss_pred eccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECC---------EEeeeecCCCCccEEEEeCceeec
Confidence 578889999999999999975322 223 4443 668999999999 99999762 22 35688885 233
Q ss_pred CCccEEEEEEEecCc
Q 006713 448 GSNISLFVLVENMGR 462 (634)
Q Consensus 448 ~~~~~L~ILven~Gr 462 (634)
.+.++|.||+++||+
T Consensus 96 ~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 96 YGNNVLVVLWDNMGH 110 (111)
T ss_dssp TCEEEEEEEEE-STT
T ss_pred CCCEEEEEEEeCCCC
Confidence 357788999999996
No 15
>PLN02803 beta-amylase
Probab=98.17 E-value=7.2e-06 Score=90.74 Aligned_cols=118 Identities=23% Similarity=0.441 Sum_probs=83.3
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC------
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg------ 95 (634)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..+++++++++||++.+--.=--||. +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG--NVGD~~~Ip 180 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG--NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 566788999999999999999999999999 599999999 89999999999998654432234544 322
Q ss_pred Ccccccc---cCCCeeecc----CCHHH----------------HHHHHHHHHHHHHHhccccccCCCcEEEEccc
Q 006713 96 FPAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (634)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~~~~y----------------~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (634)
+|.|+.+ ++|++...+ .+..| ++.-+.|++..-..+++++ ++.|..+||.
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l---~~~I~eI~VG 253 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL---GGVIAEIQVG 253 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh---cCceEEEEec
Confidence 9999986 356664421 01111 1223344444555555554 4788888884
No 16
>PLN00197 beta-amylase; Provisional
Probab=98.15 E-value=8.3e-06 Score=90.51 Aligned_cols=82 Identities=26% Similarity=0.427 Sum_probs=66.5
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC------
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg------ 95 (634)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..+++++++++||++.+--.=--||. +-|
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG--NVGD~~~Ip 200 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG--NVGDSCTIP 200 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 567899999999999999999999999998 799999999 89999999999998554432234544 333
Q ss_pred Ccccccc---cCCCeee
Q 006713 96 FPAWLLA---KKPALKL 109 (634)
Q Consensus 96 ~P~Wl~~---~~p~~~~ 109 (634)
+|.|+.+ ++|++..
T Consensus 201 LP~WV~~~g~~dpDiff 217 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAY 217 (573)
T ss_pred CCHHHHHhhccCCCcee
Confidence 9999986 3566543
No 17
>PLN02705 beta-amylase
Probab=98.13 E-value=9.1e-06 Score=90.79 Aligned_cols=82 Identities=18% Similarity=0.361 Sum_probs=66.3
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC------
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg------ 95 (634)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..++++++++.||++.+--.=--||. +.|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG--NVGD~~~IP 341 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG--NASGNVMIS 341 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC--CCCCccccc
Confidence 577899999999999999999999999998 699999999 89999999999998544322233554 333
Q ss_pred Ccccccc---cCCCeee
Q 006713 96 FPAWLLA---KKPALKL 109 (634)
Q Consensus 96 ~P~Wl~~---~~p~~~~ 109 (634)
+|.|+.+ +.|++..
T Consensus 342 LP~WV~e~g~~nPDiff 358 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFF 358 (681)
T ss_pred CCHHHHHhcccCCCcee
Confidence 9999985 3566543
No 18
>TIGR03356 BGL beta-galactosidase.
Probab=98.12 E-value=7.3e-06 Score=90.94 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=83.2
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
-..|+++|++||++|+|++|+.|.|+..+|. +|++|.++..=.+++|+.|.++||.+|+-. + --.+|.||.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL----~----Hfd~P~~l~ 124 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTL----Y----HWDLPQALE 124 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEee----c----cCCccHHHH
Confidence 3789999999999999999999999999999 799998776668999999999999988873 2 125899998
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCc
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF 151 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEy 151 (634)
++ .+. .++...+.-.+|.+.+++++.. -|-.|-.=||.
T Consensus 125 ~~-gGw----~~~~~~~~f~~ya~~~~~~~~d-------~v~~w~t~NEp 162 (427)
T TIGR03356 125 DR-GGW----LNRDTAEWFAEYAAVVAERLGD-------RVKHWITLNEP 162 (427)
T ss_pred hc-CCC----CChHHHHHHHHHHHHHHHHhCC-------cCCEEEEecCc
Confidence 64 343 2455666666666667776643 23344555554
No 19
>PLN02905 beta-amylase
Probab=98.09 E-value=1.2e-05 Score=90.01 Aligned_cols=115 Identities=17% Similarity=0.374 Sum_probs=82.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC------
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg------ 95 (634)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..++++++++.||++.+--.=--||. +-|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG--NVGD~~~IP 359 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG--NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 456788999999999999999999999998 799999999 89999999999998554432234554 333
Q ss_pred Ccccccc---cCCCeeec------------------------cCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccc
Q 006713 96 FPAWLLA---KKPALKLR------------------------SSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (634)
Q Consensus 96 ~P~Wl~~---~~p~~~~R------------------------~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (634)
+|.|+.+ +.|++... |--..|.+.++. .-..+++++ .+|.|..+||.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~S----Fr~~F~~fl--~~g~I~eI~VG 433 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRS----FRVEFDEFF--EDGVISMVEVG 433 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHH----HHHHHHHHh--cCCceEEEEec
Confidence 9999986 35665432 112345555544 444444443 24688888883
No 20
>PLN02161 beta-amylase
Probab=98.08 E-value=1.5e-05 Score=87.93 Aligned_cols=119 Identities=20% Similarity=0.278 Sum_probs=83.0
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCC-----CC
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLG-----GF 96 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~G-----g~ 96 (634)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..++++++++.||++.+--.=--||. .-| -+
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 456788999999999999999999999998 799999999 89999999999998554432233443 112 28
Q ss_pred cccccc---cCCCeeecc----CCHHH----------------HHHHHHHHHHHHHHhccccccCCCcEEEEccc
Q 006713 97 PAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (634)
Q Consensus 97 P~Wl~~---~~p~~~~R~----~~~~y----------------~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (634)
|.|+.+ ++|++...+ .+++| ++.-+.|++.....++++. ++.|..+||.
T Consensus 192 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~---~~~I~eI~VG 263 (531)
T PLN02161 192 PLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI---GNVIEEISIG 263 (531)
T ss_pred CHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh---cCceEEEEec
Confidence 999985 356664421 01111 2233344444555555553 5688888883
No 21
>PLN02801 beta-amylase
Probab=98.07 E-value=1.5e-05 Score=87.86 Aligned_cols=119 Identities=20% Similarity=0.388 Sum_probs=83.1
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCC-CCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC------
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP-KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG------ 95 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg------ 95 (634)
++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..+++++++++||++.+--.=--||. +-|
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG--NVGD~~~Ip 110 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG--NVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC--CCCCccccc
Confidence 667899999999999999999999999998 599999999 89999999999998544422233544 323
Q ss_pred Ccccccc---cCCCeeecc----CCHHH----------------HHHHHHHHHHHHHHhccccccCCCcEEEEccc
Q 006713 96 FPAWLLA---KKPALKLRS----SDRAY----------------LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (634)
Q Consensus 96 ~P~Wl~~---~~p~~~~R~----~~~~y----------------~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (634)
+|.|+.+ +.|++...+ .++.| ++.-+.|++..-..++++. .+|.|..+||.
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l--~~~~I~eI~VG 184 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL--EAGVIIDIEVG 184 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cCCeeEEEEEc
Confidence 8999985 356654321 01111 2333344444555555543 24688888884
No 22
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.07 E-value=0.00026 Score=74.70 Aligned_cols=148 Identities=22% Similarity=0.399 Sum_probs=87.2
Q ss_pred eCCEeeEEEEEeecCC---CCCHhhHHHHHHHHHHcCCCEEEEecc--CCCC--------CC----CCCceeecch----
Q 006713 4 KDGEPFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLH--------EP----KPGKLVFSGI---- 62 (634)
Q Consensus 4 ~dG~~~~~~~g~~hy~---r~p~~~W~~~l~~~k~~G~N~V~~yv~--W~~h--------Ep----~~G~~df~~~---- 62 (634)
-||+||+.++ .-.+. |...++|+.-|+..|+-|||+|++=++ |... .| .++.+||+..
T Consensus 8 ~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 8 ADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp TTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H
T ss_pred CCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH
Confidence 6999999997 66653 677899999999999999999999654 4322 11 1233677653
Q ss_pred -hhHHHHHHHHHHcCceEEecC---CCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccC
Q 006713 63 -ADLVSFLKLCQKLDLLVMLRP---GPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDI 138 (634)
Q Consensus 63 -~dl~~fl~~a~~~gL~Vilrp---gPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ 138 (634)
..+++.|++|.+.||.+-|-| .||.-+-|-.| | ..| =.+.+++|.+.|+++++.+-
T Consensus 87 F~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~-------~~m--------~~e~~~~Y~~yv~~Ry~~~~--- 146 (289)
T PF13204_consen 87 FDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P-------NIM--------PPENAERYGRYVVARYGAYP--- 146 (289)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T-------TSS---------HHHHHHHHHHHHHHHTT-S---
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c-------cCC--------CHHHHHHHHHHHHHHHhcCC---
Confidence 579999999999999875543 22322333222 1 111 13678899999999998862
Q ss_pred CCcEEEEccccCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 006713 139 GGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKD 175 (634)
Q Consensus 139 ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~~G~~ 175 (634)
+|| |=|-||+.......++.+.+.+.+++..+-.
T Consensus 147 --Nvi-W~l~gd~~~~~~~~~~w~~~~~~i~~~dp~~ 180 (289)
T PF13204_consen 147 --NVI-WILGGDYFDTEKTRADWDAMARGIKENDPYQ 180 (289)
T ss_dssp --SEE-EEEESSS--TTSSHHHHHHHHHHHHHH--SS
T ss_pred --CCE-EEecCccCCCCcCHHHHHHHHHHHHhhCCCC
Confidence 566 7799999222367778888888888855445
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.98 E-value=0.00014 Score=77.85 Aligned_cols=273 Identities=18% Similarity=0.270 Sum_probs=158.9
Q ss_pred EEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEe--ccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCccc
Q 006713 11 IIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTY--VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 11 ~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~y--v~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+. .+++++.|+++||.|--.+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~---~D~~~~~a~~~g~~vrGH~----- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFES---ADAILDWARENGIKVRGHT----- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HH---HHHHHHHHHHTT-EEEEEE-----
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCccc---hhHHHHHHHhcCcceeeee-----
Confidence 789999987766542 4445555679999885 66999999999999998 8999999999999886441
Q ss_pred ceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCC-------------
Q 006713 89 AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG------------- 155 (634)
Q Consensus 89 aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~------------- 155 (634)
==|.. ..|.|+... +... ....+...+.+++++++++.+++.. |.|.+|-|=||.=.-.
T Consensus 80 LvW~~-~~P~w~~~~-~~~~-~~~~~~~~~~l~~~I~~v~~~y~~~-----g~i~~WDVvNE~i~~~~~~~~~r~~~~~~ 151 (320)
T PF00331_consen 80 LVWHS-QTPDWVFNL-ANGS-PDEKEELRARLENHIKTVVTRYKDK-----GRIYAWDVVNEAIDDDGNPGGLRDSPWYD 151 (320)
T ss_dssp EEESS-SS-HHHHTS-TTSS-BHHHHHHHHHHHHHHHHHHHHTTTT-----TTESEEEEEES-B-TTSSSSSBCTSHHHH
T ss_pred EEEcc-cccceeeec-cCCC-cccHHHHHHHHHHHHHHHHhHhccc-----cceEEEEEeeecccCCCccccccCChhhh
Confidence 11533 789999873 1110 0001247899999999999888542 7999999999973211
Q ss_pred -CcHHHHHHHHHHHHHhcCCceEEEEecCCCcccc-------------cCCccCCCeeeeeecCCCCCCCchhHHHHHHh
Q 006713 156 -DDKEYLHHLVTLARAHLGKDIILYTTDGGTRETL-------------LKGTIRGDAVFAAVDFSTGAEPWPIFKLQKQF 221 (634)
Q Consensus 156 -~~~~y~~~l~~~~~~~~G~~vpl~t~dg~~~~~~-------------~~g~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 221 (634)
...+|+...-+.++++ --++.||-||-.....- ..|. +-+.|--...|.....+....+.++++
T Consensus 152 ~lG~~yi~~aF~~A~~~-~P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gv-pIdgIG~Q~H~~~~~~~~~i~~~l~~~ 229 (320)
T PF00331_consen 152 ALGPDYIADAFRAAREA-DPNAKLFYNDYNIESPAKRDAYLNLVKDLKARGV-PIDGIGLQSHFDAGYPPEQIWNALDRF 229 (320)
T ss_dssp HHTTCHHHHHHHHHHHH-HTTSEEEEEESSTTSTHHHHHHHHHHHHHHHTTH-CS-EEEEEEEEETTSSHHHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHh-CCCcEEEeccccccchHHHHHHHHHHHHHHhCCC-ccceechhhccCCCCCHHHHHHHHHHH
Confidence 1246888888888885 44899999998643320 0121 111111111122211112222344555
Q ss_pred cCCCCCCCccceeccccccccCCCCc------cCChHHHHHHHHHHHhcC-CeeEEEEeecCCCCCCCCCCCCCCCCCCC
Q 006713 222 NAPGKSPPLSSEFYTGWLTHWGEKIA------KTDADFTASYLEKILSQN-GSAVLYMAHGGTNFGFYNGANTGNTESDY 294 (634)
Q Consensus 222 ~~~~~~P~~~~E~~~Gwf~~Wg~~~~------~~~~~~~~~~~~~~l~~~-~s~n~YM~hGGTNfG~~~Ga~~~~~~~~~ 294 (634)
..-+ .|...+|+=. ...... ..-++.+...+..+++.. +++ -|=|=||++.+.+ +
T Consensus 230 ~~~G-l~i~ITElDv-----~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v-----~git~Wg~~D~~s-------W 291 (320)
T PF00331_consen 230 ASLG-LPIHITELDV-----RDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAV-----EGITWWGFTDGYS-------W 291 (320)
T ss_dssp HTTT-SEEEEEEEEE-----ESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTE-----EEEEESSSBTTGS-------T
T ss_pred HHcC-CceEEEeeee-----cCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCC-----CEEEEECCCCCCc-------c
Confidence 3333 5888999732 221111 011233333344444444 122 2335578876543 2
Q ss_pred CCcccccCCCCccccCCCCChHHHHHHHHH
Q 006713 295 QPDLTSYDYDAPIKESGDVDNPKFKAIRRV 324 (634)
Q Consensus 295 ~p~~TSYDY~APi~E~G~~t~~Ky~~lr~~ 324 (634)
.+... .++..+.++++++.+ -|.++++.
T Consensus 292 ~~~~~-~~~~~lfd~~~~~Kp-a~~~~~~a 319 (320)
T PF00331_consen 292 RPDTP-PDRPLLFDEDYQPKP-AYDAIVDA 319 (320)
T ss_dssp TGGHS-EG--SSB-TTSBB-H-HHHHHHHH
T ss_pred cCCCC-CCCCeeECCCcCCCH-HHHHHHhc
Confidence 11111 677899999999985 89888754
No 24
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.84 E-value=0.00019 Score=75.51 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=94.5
Q ss_pred eCCEeeEEEEEeecCCCC-----------CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHH
Q 006713 4 KDGEPFRIIGGDLHYFRI-----------LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLC 72 (634)
Q Consensus 4 ~dG~~~~~~~g~~hy~r~-----------p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a 72 (634)
.+|++|+|.|-.+.+--. .++.|++++..||++|+||||+|- -+-..|-+++.++.
T Consensus 22 ~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~-------------vdp~~nHd~CM~~~ 88 (314)
T PF03198_consen 22 KNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS-------------VDPSKNHDECMSAF 88 (314)
T ss_dssp TT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES----------------TTS--HHHHHHH
T ss_pred CCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE-------------eCCCCCHHHHHHHH
Confidence 689999999887775322 378999999999999999999972 23335789999999
Q ss_pred HHcCceEEecCCCcccceecCCCCcccccccCCCeeeccCCH--HHHHHHHHHHHHHHHHhccccccCCCcEEEEccccC
Q 006713 73 QKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDR--AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (634)
Q Consensus 73 ~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~--~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENE 150 (634)
++.|+|||+..+. |...+...+| .|-...-.-+..++..++++ .+++++=+.||
T Consensus 89 ~~aGIYvi~Dl~~-------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y-----~N~LgFf~GNE 144 (314)
T PF03198_consen 89 ADAGIYVILDLNT-------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY-----DNTLGFFAGNE 144 (314)
T ss_dssp HHTT-EEEEES-B-------------------TTBS--TTS------HHHHHHHHHHHHHHTT------TTEEEEEEEES
T ss_pred HhCCCEEEEecCC-------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC-----CceEEEEecce
Confidence 9999999999432 2222333344 33222222233477777776 39999999999
Q ss_pred cCCCC---C----cHHHHHHHHHHHHHhcCC-ceEE--EEecCCC-----cccccCCccC-CCeeeeeecCC-CCCCCc-
Q 006713 151 FGSYG---D----DKEYLHHLVTLARAHLGK-DIIL--YTTDGGT-----RETLLKGTIR-GDAVFAAVDFS-TGAEPW- 212 (634)
Q Consensus 151 yg~~~---~----~~~y~~~l~~~~~~~~G~-~vpl--~t~dg~~-----~~~~~~g~~~-~~~~~~~~~f~-~~~~~~- 212 (634)
.-.-. . -++..+.+|+-++. .+. .+|+ -++|... ...+.||.-. .-|.|+--++. |+....
T Consensus 145 Vin~~~~t~aap~vKAavRD~K~Yi~~-~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~ 223 (314)
T PF03198_consen 145 VINDASNTNAAPYVKAAVRDMKAYIKS-KGYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFE 223 (314)
T ss_dssp SS-STT-GGGHHHHHHHHHHHHHHHHH-SSS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HH
T ss_pred eecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccc
Confidence 86422 1 24455555555555 444 4565 4566542 1235676532 11344422232 222211
Q ss_pred -hhHH-HHHHhcCCCCCCCccceeccc
Q 006713 213 -PIFK-LQKQFNAPGKSPPLSSEFYTG 237 (634)
Q Consensus 213 -~~~~-~~~~~~~~~~~P~~~~E~~~G 237 (634)
..++ +.+.|..- .-|.|-+||..-
T Consensus 224 ~SGy~~l~~~f~~y-~vPvffSEyGCn 249 (314)
T PF03198_consen 224 TSGYDRLTKEFSNY-SVPVFFSEYGCN 249 (314)
T ss_dssp HHSHHHHHHHHTT--SS-EEEEEE---
T ss_pred cccHHHHHHHhhCC-CCCeEEcccCCC
Confidence 1122 23444322 469999999873
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.78 E-value=1.9e-05 Score=85.65 Aligned_cols=114 Identities=19% Similarity=0.298 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecchhhHHHHHHHHHHcCceEEecCCCcccce----ecCCCCccc
Q 006713 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE----WDLGGFPAW 99 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aE----w~~Gg~P~W 99 (634)
.-+..|+++|++|+..|.+.|.|...|.. |++|||++ .+++++++++.||++.+-..=--||. .-+=-+|.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 56789999999999999999999999997 99999999 89999999999998655422223432 111138999
Q ss_pred ccc---cCCCeeec--c------------CCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 006713 100 LLA---KKPALKLR--S------------SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (634)
Q Consensus 100 l~~---~~p~~~~R--~------------~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Qv 147 (634)
+.. ++ ++... + .... ++.-+.|++.....++++. +.|..+||
T Consensus 94 v~~~~~~~-di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKD-DIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHS-GGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH----TGEEEEEE
T ss_pred HHhccccC-CcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH----hhheEEEe
Confidence 974 22 33221 1 1112 4444555555555555543 46777766
No 26
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.60 E-value=0.00021 Score=68.44 Aligned_cols=93 Identities=22% Similarity=0.221 Sum_probs=63.8
Q ss_pred CcccceEEEEEeecCCC----CCcceeecccccEEEEEECCCCCCCCCCCeEEEEeeecc-cceeEecccccCCc-cEEE
Q 006713 381 GQMFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSN-ISLF 454 (634)
Q Consensus 381 gq~~GyvlYrt~~~~~~----~~~~L~i~~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~-~~~~~~p~~~~~~~-~~L~ 454 (634)
....|+.|||++|..+. ....|.+.++.+.|.||||| +++|...... ...+.++.....+. |+|.
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG---------~~vg~~~~~~~~~~~dIt~~l~~g~~N~l~ 134 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNG---------KLVGSHEGGYTPFEFDITDYLKPGEENTLA 134 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETT---------EEEEEEESTTS-EEEECGGGSSSEEEEEEE
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCC---------eEEeeeCCCcCCeEEeChhhccCCCCEEEE
Confidence 45679999999997652 34567889999999999999 9999875432 23456654444455 9999
Q ss_pred EEEEecCccccCCCc--cCCCCcceeEEeC
Q 006713 455 VLVENMGRVNYGPYM--FDEKGILSSVYLG 482 (634)
Q Consensus 455 ILven~Gr~N~g~~~--~~~KGI~g~V~L~ 482 (634)
|.|.+...-.+-+.. ....||..+|.|-
T Consensus 135 V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 135 VRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EEEeecCCCceeecCcCCccCccccEEEEE
Confidence 999965544331112 2378999999873
No 27
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.33 E-value=0.00022 Score=80.23 Aligned_cols=97 Identities=15% Similarity=0.305 Sum_probs=72.3
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~--~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
-..|+++++.||++|+|+.|+-|.|...+|. ++++|-.+..=.+++|+.|.++||.+++-. + -=.+|.||
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL----~----H~~~P~~l 141 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL----C----HFDVPMHL 141 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----e----CCCCCHHH
Confidence 4678999999999999999999999999997 566777777778999999999999987762 1 22689999
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHh
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l 131 (634)
..++-+-. ++...++-.+|.+.+++++
T Consensus 142 ~~~~GGW~----~~~~~~~F~~ya~~~~~~f 168 (474)
T PRK09852 142 VTEYGSWR----NRKMVEFFSRYARTCFEAF 168 (474)
T ss_pred HHhcCCCC----CHHHHHHHHHHHHHHHHHh
Confidence 86444442 3444444444444455554
No 28
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.33 E-value=0.0039 Score=60.62 Aligned_cols=127 Identities=17% Similarity=0.233 Sum_probs=81.5
Q ss_pred CCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCC-----CC---CCceeecchhhHHHHHHHHHHcCceEEecCCCcccce
Q 006713 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHE-----PK---PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (634)
Q Consensus 19 ~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hE-----p~---~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aE 90 (634)
-.+.++.|+++++.||++|+++|-+- |...+ |. ++.|.-....=|+.+|++|++.||+|.+..+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~------ 86 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY------ 86 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC------
Confidence 47999999999999999999998642 22221 11 1122222222389999999999999999842
Q ss_pred ecCCCCcccccccCCCeeeccCCHHH-HHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCC-CcHHHHHHHHHHH
Q 006713 91 WDLGGFPAWLLAKKPALKLRSSDRAY-LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLA 168 (634)
Q Consensus 91 w~~Gg~P~Wl~~~~p~~~~R~~~~~y-~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~-~~~~y~~~l~~~~ 168 (634)
--|.|... .|+.. .+..+ .++..+... +++....-+|=|-.|...+. ...++.+.|.+.+
T Consensus 87 ----~~~~~w~~---------~~~~~~~~~~~----~v~~el~~~-yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~l 148 (166)
T PF14488_consen 87 ----FDPDYWDQ---------GDLDWEAERNK----QVADELWQR-YGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYL 148 (166)
T ss_pred ----CCchhhhc---------cCHHHHHHHHH----HHHHHHHHH-HcCCCCCceEEEecccCCcccchHHHHHHHHHHH
Confidence 23445432 22222 11222 245555442 45566888999999997654 4566777777777
Q ss_pred HHh
Q 006713 169 RAH 171 (634)
Q Consensus 169 ~~~ 171 (634)
++.
T Consensus 149 k~~ 151 (166)
T PF14488_consen 149 KQI 151 (166)
T ss_pred HHh
Confidence 773
No 29
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.27 E-value=0.00093 Score=75.29 Aligned_cols=97 Identities=13% Similarity=0.231 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~--~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
..|+++|+.||++|+|+-|+-|.|...+|. +|++|-.|..=.+++|+.|.++||..++-. + -=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL----~----H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL----S----HFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----e----CCCCCHHHH
Confidence 678999999999999999999999999996 667888887778999999999999987762 1 126899998
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhc
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (634)
.++-+-. ++...++-.+|-+.+++++.
T Consensus 141 ~~yGGW~----n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSWT----NRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCCC----ChHHHHHHHHHHHHHHHHhc
Confidence 7544442 34444444455555555553
No 30
>PLN02998 beta-glucosidase
Probab=97.24 E-value=0.00035 Score=78.95 Aligned_cols=103 Identities=9% Similarity=0.157 Sum_probs=78.0
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
-..|++|++.||+||+|+-|+-|.|+..+|. .|.+|-.|..=.+++|+.+.++||..++-. . -| -+|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL----~-H~---dlP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL----H-HF---DLPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe----c-CC---CCCHHHH
Confidence 4778999999999999999999999999996 678888888888999999999999866652 1 13 4799998
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhcc
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (634)
.++-+-.-|..-..|.++++.-++++..+++-
T Consensus 153 ~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~ 184 (497)
T PLN02998 153 DEYGGWLSQEIVRDFTAYADTCFKEFGDRVSH 184 (497)
T ss_pred HhhCCcCCchHHHHHHHHHHHHHHHhcCcCCE
Confidence 75445433444455666666655555555543
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0031 Score=66.47 Aligned_cols=124 Identities=20% Similarity=0.369 Sum_probs=96.5
Q ss_pred CCEE--EEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHH
Q 006713 38 LNTI--QTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRA 115 (634)
Q Consensus 38 ~N~V--~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~ 115 (634)
||.| +.-.=|+..||++|.|+|+. -|+..+.|+++||.+--. +.+ | .--.|.|+... + -+-++
T Consensus 58 ~n~iTpenemKwe~i~p~~G~f~Fe~---AD~ia~FAr~h~m~lhGH--tLv---W-~~q~P~W~~~~--e----~~~~~ 122 (345)
T COG3693 58 CNQITPENEMKWEAIEPERGRFNFEA---ADAIANFARKHNMPLHGH--TLV---W-HSQVPDWLFGD--E----LSKEA 122 (345)
T ss_pred hcccccccccccccccCCCCccCccc---hHHHHHHHHHcCCeeccc--eee---e-cccCCchhhcc--c----cChHH
Confidence 5544 34566999999999999999 799999999999965322 112 3 22689999862 1 35678
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC-----------C-CCcHHHHHHHHHHHHHhcCCceEEEEecC
Q 006713 116 YLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS-----------Y-GDDKEYLHHLVTLARAHLGKDIILYTTDG 183 (634)
Q Consensus 116 y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~-----------~-~~~~~y~~~l~~~~~~~~G~~vpl~t~dg 183 (634)
.++.+++++..++.+++. -|+.|-|=||.=. . +...+|+++--+.+|+ ..-+..||.||-
T Consensus 123 ~~~~~e~hI~tV~~rYkg-------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~Are-adP~AkL~~NDY 194 (345)
T COG3693 123 LAKMVEEHIKTVVGRYKG-------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIARE-ADPDAKLVINDY 194 (345)
T ss_pred HHHHHHHHHHHHHHhccC-------ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHh-hCCCceEEeecc
Confidence 999999999999999853 5899999999732 1 1457899999999998 688899999987
Q ss_pred C
Q 006713 184 G 184 (634)
Q Consensus 184 ~ 184 (634)
.
T Consensus 195 ~ 195 (345)
T COG3693 195 S 195 (345)
T ss_pred c
Confidence 4
No 32
>PLN02814 beta-glucosidase
Probab=97.19 E-value=0.00044 Score=78.34 Aligned_cols=102 Identities=10% Similarity=0.163 Sum_probs=76.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
...|++|++.||++|+|+-|+-|.|+-.+|. +|.+|-.|..=.+++|+.|.++||..++-. + -| -+|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL----~-H~---dlP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL----Y-HY---DLPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe----c-CC---CCCHHHH
Confidence 4789999999999999999999999999996 688998887788999999999999876652 1 13 4799998
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhc
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (634)
+++-+-.-|..-..|.++++.-++++..+++
T Consensus 148 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 148 DEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred HhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 7545543343334555555554444444443
No 33
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.15 E-value=0.00067 Score=76.47 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=77.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~--~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
-..|+++++.||++|+|+-|+-|.|+..+|. +|++|-.|..=.+++|+.+.++||..++-. + -| -+|.||
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL----~-H~---dlP~~L 143 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI----T-HF---DCPMHL 143 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe----c-cc---CCCHHH
Confidence 3789999999999999999999999999997 667888887778999999999999866651 1 12 589999
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhcc
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (634)
..++-+..-|..-..|.++++.-++++..+++-
T Consensus 144 ~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~ 176 (478)
T PRK09593 144 IEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKY 176 (478)
T ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCE
Confidence 865455533433345666666655555555543
No 34
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.11 E-value=0.00026 Score=79.30 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=78.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~--~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
...|+++|+.||++|+|+-|+-|.|...+|. +|++|-.+..-.+++|+.+.++||..|+-. + --.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL----~----H~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL----Y----HFDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE----E----SS--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee----e----ecccccce
Confidence 4789999999999999999999999999999 699999987778999999999999877651 1 34699999
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcC
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg 152 (634)
.+ +-+. .++...+.-.+|-+.+++++..+ |-.|-.=||..
T Consensus 129 ~~-~ggw----~~~~~~~~F~~Ya~~~~~~~gd~-------V~~w~T~NEp~ 168 (455)
T PF00232_consen 129 ED-YGGW----LNRETVDWFARYAEFVFERFGDR-------VKYWITFNEPN 168 (455)
T ss_dssp HH-HTGG----GSTHHHHHHHHHHHHHHHHHTTT-------BSEEEEEETHH
T ss_pred ee-cccc----cCHHHHHHHHHHHHHHHHHhCCC-------cceEEeccccc
Confidence 86 3333 24556666666666677777543 33455666654
No 35
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.0017 Score=71.88 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=71.3
Q ss_pred HhhH-----HHHHHHHHHcCCCEEEEeccCCCCCCC----CCceeecchhhHHHHHHHHHHcCceEEec----CCCcccc
Q 006713 23 PQHW-----EDRLLRAKALGLNTIQTYVPWNLHEPK----PGKLVFSGIADLVSFLKLCQKLDLLVMLR----PGPYICA 89 (634)
Q Consensus 23 ~~~W-----~~~l~~~k~~G~N~V~~yv~W~~hEp~----~G~~df~~~~dl~~fl~~a~~~gL~Vilr----pgPyi~a 89 (634)
...| ++.+..||.+|||+||+++.|..+++. |...+-+-..=|+++|+.|++.||+|++. ||.-.|-
T Consensus 67 ~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~ 146 (407)
T COG2730 67 ESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGH 146 (407)
T ss_pred hhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCc
Confidence 5678 999999999999999999995444553 33331121114899999999999999998 3322221
Q ss_pred eecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC
Q 006713 90 EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (634)
Q Consensus 90 Ew~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (634)
-..|....+.. .....++ +..+.+.++.+ +++.-.||++|+=||.-.
T Consensus 147 ------~~s~~~~~~~~------~~~~~~~----~~~~w~~ia~~-f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 ------EHSGYTSDYKE------ENENVEA----TIDIWKFIANR-FKNYDTVIGFELINEPNG 193 (407)
T ss_pred ------Ccccccccccc------cchhHHH----HHHHHHHHHHh-ccCCCceeeeeeecCCcc
Confidence 12343332222 1112222 33344444443 234569999999999974
No 36
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.06 E-value=0.00079 Score=75.82 Aligned_cols=104 Identities=12% Similarity=0.177 Sum_probs=78.0
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~--~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
-..|+++++.||+||+|+-|+-|.|+..+|. +|++|-.|..=.+++|+.|.++||..++-. .+ | -+|.||
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL---~H--~---dlP~~L 137 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL---SH--F---EMPYHL 137 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe---cC--C---CCCHHH
Confidence 4779999999999999999999999999997 667888887778999999999999866652 11 2 589999
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhccc
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (634)
..++-+-.-|..-..|.++++.-++++..+++-+
T Consensus 138 ~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~W 171 (476)
T PRK09589 138 VTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYW 171 (476)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 8755555444434456666666555555555433
No 37
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.02 E-value=0.0017 Score=69.71 Aligned_cols=105 Identities=25% Similarity=0.334 Sum_probs=63.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCC-CceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC---Cc-cccc
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKP-GKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG---FP-AWLL 101 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~-G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg---~P-~Wl~ 101 (634)
+|.|+.||+.|+|+||+=| | +.|.. |..|.+. ..+..+-|+++||+|+|..- | ..-|..-| .| +|..
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~~---~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~Q~~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLED---VIALAKRAKAAGMKVLLDFH-Y-SDFWADPGKQNKPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHH---HHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-B--TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHHH---HHHHHHHHHHCCCeEEEeec-c-cCCCCCCCCCCCCccCCC
Confidence 6789999999999999987 4 45554 4444443 55555666789999999832 1 11222222 12 2322
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcC
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg 152 (634)
.+-..-.++|..|.+.++..|+. +|=.+=||||.||..
T Consensus 99 ---------~~~~~l~~~v~~yT~~vl~~l~~----~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 99 ---------LSFDQLAKAVYDYTKDVLQALKA----AGVTPDMVQVGNEIN 136 (332)
T ss_dssp ---------SSHHHHHHHHHHHHHHHHHHHHH----TT--ESEEEESSSGG
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHH----CCCCccEEEeCcccc
Confidence 13455678899999999999965 366788999999974
No 38
>PLN02849 beta-glucosidase
Probab=97.02 E-value=0.00072 Score=76.58 Aligned_cols=104 Identities=11% Similarity=0.160 Sum_probs=78.1
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
...|+++++.||++|+|+-|+-|.|.-.+|. .|.+|-.|..=.+++|+.|.++||..++-- + -| -+|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL----~-H~---dlP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL----F-HY---DHPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee----c-CC---CCcHHHH
Confidence 4778999999999999999999999999996 478888887778999999999999876652 1 12 4899998
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccc
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (634)
+++-+-.-|..-..|.++++.-++++..+++-+
T Consensus 150 ~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~W 182 (503)
T PLN02849 150 DDYGGWINRRIIKDFTAYADVCFREFGNHVKFW 182 (503)
T ss_pred HhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEE
Confidence 754454334334456666666555555555433
No 39
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.96 E-value=0.0027 Score=71.51 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=71.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
-..++++++.||++|+|+-|+-|.|+..+|. .|.+|-.|..=.+++|+.|.++||..++-. + -=-+|.||.
T Consensus 53 Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL----~----H~dlP~~L~ 124 (469)
T PRK13511 53 YHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL----H----HFDTPEALH 124 (469)
T ss_pred hhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe----c----CCCCcHHHH
Confidence 3678999999999999999999999999996 578888887788999999999999866652 1 115899998
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHh
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l 131 (634)
++ -+- .++...+.-.+|-+.+++++
T Consensus 125 ~~-GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 125 SN-GDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred Hc-CCC----CCHHHHHHHHHHHHHHHHHh
Confidence 63 333 23334444444444454444
No 40
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.90 E-value=0.0036 Score=70.48 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=72.0
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
-..|+++++.||++|+|+-|+-|.|+..+|. +|.+|-.|..=.+++|+.|.++||..++-. .+ | -+|.||.
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL---~H--~---dlP~~L~ 123 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL---HH--F---DTPEALH 123 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec---cC--C---CCcHHHH
Confidence 3778999999999999999999999999996 678888887788999999999999877762 11 2 4899998
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHH
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVL 127 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l 127 (634)
++ -+-.-|..-..|.++++.-++++
T Consensus 124 ~~-GGW~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 124 SN-GDFLNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred Hc-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 63 34433333334444444433333
No 41
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.49 E-value=0.0078 Score=57.61 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=59.5
Q ss_pred CCCceEEEEEEEeCCCCCCCceEEeeCCC-eEEEEEECCcccccccCCCCCcceeecCcccccccc-cEEEEEEecCCCC
Q 006713 533 TKEPAFYVGRFSIDKVNQVKDTYLSFSGW-GKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILRHGE-NLVVIFELESPNS 610 (634)
Q Consensus 533 ~~~p~fy~~~f~l~~~~~~~Dt~Ld~~g~-~KG~v~VNG~nlGRYW~~iGPQ~tlYVP~~~Lk~G~-N~IivfE~e~~~~ 610 (634)
..+..|||.+|++|.......++|.+.+. ....|||||+-+|+-..... ...+=|+. .|++|+ |+|.|.=.....
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~-~~~~dIt~-~l~~g~~N~l~V~v~~~~~- 142 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT-PFEFDITD-YLKPGEENTLAVRVDNWPD- 142 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS--EEEECGG-GSSSEEEEEEEEEEESSSG-
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcC-CeEEeChh-hccCCCCEEEEEEEeecCC-
Confidence 35689999999998753235678999875 69999999999999652222 22333754 789888 998885442211
Q ss_pred ccEEEEeeccccccCcccccc
Q 006713 611 ELVIHSVNQPDFTCGSIKSNV 631 (634)
Q Consensus 611 ~~~v~~~~~~~~~~~~~~~~~ 631 (634)
...+. ....+.++++-.+|
T Consensus 143 ~~~~~--~~~~~~~~GI~r~V 161 (167)
T PF02837_consen 143 GSTIP--GFDYFNYAGIWRPV 161 (167)
T ss_dssp GGCGB--SSSEEE--EEESEE
T ss_pred Cceee--cCcCCccCccccEE
Confidence 11111 33445556655544
No 42
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.35 E-value=0.0047 Score=68.51 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=72.9
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCC--ceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G--~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
-..++++++.||+||+|+.|+-|.|+..-|..+ +.+=.|..=.+++|+.|.++|+..++-.- + | -+|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~---H--f---d~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY---H--F---DLPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec---c--c---CCcHHH
Confidence 467899999999999999999999999999654 48888877789999999999998776521 1 2 379999
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhc
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (634)
.+.+-+-.-|..= ++-.+|-+.++.++.
T Consensus 130 ~~~ygGW~nR~~i----~~F~~ya~~vf~~f~ 157 (460)
T COG2723 130 QKPYGGWENRETV----DAFARYAATVFERFG 157 (460)
T ss_pred hhccCCccCHHHH----HHHHHHHHHHHHHhc
Confidence 9855455444333 344444455555553
No 43
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.043 Score=57.30 Aligned_cols=110 Identities=24% Similarity=0.238 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHH---cCceEEecCCCcccceecCCCCcccccc-
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQK---LDLLVMLRPGPYICAEWDLGGFPAWLLA- 102 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~---~gL~VilrpgPyi~aEw~~Gg~P~Wl~~- 102 (634)
+|.|+-+|+.|+|.||+=| |+.---..|.=-=.|+.|+.+.|++|++ +||+|++..= .-+|...
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwaDP 133 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWADP 133 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhccCh
Confidence 6889999999999999865 5554334444444567899999998864 7999999831 1122221
Q ss_pred ---cCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcC
Q 006713 103 ---KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG 152 (634)
Q Consensus 103 ---~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg 152 (634)
+.|......+-..-.+++-.|.+..+..+++ +|=-+=||||.||-.
T Consensus 134 akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~----eGi~pdmVQVGNEtn 182 (403)
T COG3867 134 AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK----EGILPDMVQVGNETN 182 (403)
T ss_pred hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH----cCCCccceEeccccC
Confidence 1232222234445567788888888888865 355667999999984
No 44
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.32 E-value=0.05 Score=58.11 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=72.1
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCC-------CCCC-------CCCc-eeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWN-------LHEP-------KPGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~-------~hEp-------~~G~-~df~~~~dl~~fl~~a~~~gL~VilrpgPy 86 (634)
.++.-++.|++++++|||+|-.-|-+. -.+| .+|. -.|+- |..+|+.|+|+||.|.... .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~Dp---L~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDP---LEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccH---HHHHHHHHHHcCCEEEEEE-Ee
Confidence 378889999999999999997655431 1222 1121 12445 9999999999999998764 11
Q ss_pred ccceecC----CCCcccccccCCCeeecc----CCHHH----HHHHHHHHHHHHHHhccccccCCCcEEEEccc
Q 006713 87 ICAEWDL----GGFPAWLLAKKPALKLRS----SDRAY----LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE 148 (634)
Q Consensus 87 i~aEw~~----Gg~P~Wl~~~~p~~~~R~----~~~~y----~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE 148 (634)
-...... -..|.|+..+.|+..... .+..| ..+|+.|+..++..|+... +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y-----dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY-----DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC-----CCCeEEec
Confidence 0000011 125778764455543332 22222 3667777777777775543 56678877
No 45
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.01 E-value=0.12 Score=48.46 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCCEEEEecc----C-----CCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcc
Q 006713 28 DRLLRAKALGLNTIQTYVP----W-----NLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPA 98 (634)
Q Consensus 28 ~~l~~~k~~G~N~V~~yv~----W-----~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~ 98 (634)
+-++.+|++|+|+|.++.- | ..|.+.|+- ..+- |.++++.|++.||+|++|...- -.|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dl---lge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDL---LGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCH---HHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 2 344444544 2333 6999999999999999995432 11222224799
Q ss_pred cccccCCCee-------------eccCCHHHHHHHHHHHHHHHHHh
Q 006713 99 WLLAKKPALK-------------LRSSDRAYLQLVERWWGVLLPKI 131 (634)
Q Consensus 99 Wl~~~~p~~~-------------~R~~~~~y~~~~~~~~~~l~~~l 131 (634)
|+.+. ++-+ .-.-+..|++.+.+-+++++.++
T Consensus 79 W~~~~-~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRD-ADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeEC-CCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 99863 3322 11234578887777666666654
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=94.22 E-value=0.029 Score=61.94 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=111.1
Q ss_pred ceeCCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCC-CC---CCCceee-cchhhHHHHHHHHHHcC
Q 006713 2 FRKDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLH-EP---KPGKLVF-SGIADLVSFLKLCQKLD 76 (634)
Q Consensus 2 f~~dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~h-Ep---~~G~~df-~~~~dl~~fl~~a~~~g 76 (634)
|.++++++..++..--+.++-.++.+++|+.|+-+|++++|+. -+- |+ ++|.-+- ++..-++.|++.|..++
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 6778888888877666777878888999999999999999996 233 55 3333322 22345899999999999
Q ss_pred ceEEecCCCcccceecCCCC---cccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC
Q 006713 77 LLVMLRPGPYICAEWDLGGF---PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (634)
Q Consensus 77 L~VilrpgPyi~aEw~~Gg~---P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (634)
|+|+++. |.+-=..||- -.|....+|+-.++ |+.++..-++|...+++-+ +....|.+|-+-||.=+
T Consensus 81 lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~iy--D~k~~~~~kkyvedlVk~y-----k~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 81 LKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVIY--DPKFRGPGKKYVEDLVKPY-----KLDPTIAGWALRNEPLV 150 (587)
T ss_pred ceEEEEE---eecccccCcceeEeecCCCCCcccccc--chhhcccHHHHHHHHhhhh-----ccChHHHHHHhcCCccc
Confidence 9998883 5553345662 34665555655444 7777777788888888733 44678999999999322
Q ss_pred --CCCcHHHHHHHHHHHH
Q 006713 154 --YGDDKEYLHHLVTLAR 169 (634)
Q Consensus 154 --~~~~~~y~~~l~~~~~ 169 (634)
-.++..+++|++.++-
T Consensus 151 ~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 151 EAPISVNNFWDWSGEMYA 168 (587)
T ss_pred cccCChhHHHHHHHHHHH
Confidence 1257789999999874
No 47
>PRK10150 beta-D-glucuronidase; Provisional
Probab=94.09 E-value=0.21 Score=58.14 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=60.7
Q ss_pred ccceEEEEEeecCCC----CCcceeecccccEEEEEECCCCCCCCCCCeEEEEeeecc-cceeEecc-cccCCccEEEEE
Q 006713 383 MFGFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPN-FRCGSNISLFVL 456 (634)
Q Consensus 383 ~~GyvlYrt~~~~~~----~~~~L~i~~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~-~~~~~~p~-~~~~~~~~L~IL 456 (634)
..|..|||++|..+. +...|.+.++...|.||||| +.+|...... ...+.+.. .+.++.|+|.|.
T Consensus 63 ~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG---------~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~ 133 (604)
T PRK10150 63 YVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNG---------QEVMEHKGGYTPFEADITPYVYAGKSVRITVC 133 (604)
T ss_pred CcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECC---------EEeeeEcCCccceEEeCchhccCCCceEEEEE
Confidence 468899999997642 34678899999999999999 8999765432 22345543 223334599999
Q ss_pred EEecCccc---cCCC---------------ccCCCCcceeEEeC
Q 006713 457 VENMGRVN---YGPY---------------MFDEKGILSSVYLG 482 (634)
Q Consensus 457 ven~Gr~N---~g~~---------------~~~~KGI~g~V~L~ 482 (634)
|.|.-+.. .|.. ....-||..+|.|-
T Consensus 134 v~n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~ 177 (604)
T PRK10150 134 VNNELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLY 177 (604)
T ss_pred EecCCCcccCCCCccccCCccccccccccccccccCCCceEEEE
Confidence 98743211 1111 01257999999984
No 48
>smart00642 Aamy Alpha-amylase domain.
Probab=93.22 E-value=0.25 Score=47.93 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=46.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCC-------CCCCce-----eecchhhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHE-------PKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hE-------p~~G~~-----df~~~~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
-+.+.+.|.-+|++|+|+|.+-=++...+ -.+..| .|....|+.++++.|+++||+||+..=|-=++
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 45567788889999999999843332221 122222 35556799999999999999999985443333
No 49
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=92.97 E-value=0.15 Score=57.89 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=42.2
Q ss_pred EeecCCCCCHhhHHHHHHHHH-HcCCCEEEEe-cc---CCCC-C-CCCCc--eeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 14 GDLHYFRILPQHWEDRLLRAK-ALGLNTIQTY-VP---WNLH-E-PKPGK--LVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 14 g~~hy~r~p~~~W~~~l~~~k-~~G~N~V~~y-v~---W~~h-E-p~~G~--~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
|+-|..-.-++.|+..|+.++ ++||..||+. ++ .... | ..+|. |||+. +|.++|...++||+..+..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~---lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTY---LDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HH---HHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHH---HHHHHHHHHHcCCEEEEEEE
Confidence 333444455788999999986 7899999984 22 1111 1 12332 99999 99999999999998777643
No 50
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.89 E-value=0.48 Score=52.43 Aligned_cols=138 Identities=25% Similarity=0.285 Sum_probs=90.2
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEec-------------cCCCCCCCCCce----eecchhhHHHHHHHHHHcCceEEecCC
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYV-------------PWNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv-------------~W~~hEp~~G~~----df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
.+++-.+.|.+++++|||||-.-| +|...- ||.+ .|+- |...|++|+|.||.|+...-
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~Dp---La~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDP---LAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCCh---HHHHHHHHHhcCCeeeechh
Confidence 367778999999999999996422 344433 4433 2344 88899999999999999988
Q ss_pred CcccceecCC---CCcccccccCCCeeeccCC----H----HHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC
Q 006713 85 PYICAEWDLG---GFPAWLLAKKPALKLRSSD----R----AYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (634)
Q Consensus 85 Pyi~aEw~~G---g~P~Wl~~~~p~~~~R~~~----~----~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (634)
||.-|--..- --|.|+..+.|+.....++ . +..-+|+.|+..++-.+.... .|=++|.+--++
T Consensus 137 ~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y-----dvDGIQfDd~fy- 210 (418)
T COG1649 137 PYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY-----DVDGIQFDDYFY- 210 (418)
T ss_pred hcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC-----CCCceecceeec-
Confidence 8776532221 1567777665655443222 1 345678888888877776654 677899887766
Q ss_pred CCCcHHHHHHHHHHHHH
Q 006713 154 YGDDKEYLHHLVTLARA 170 (634)
Q Consensus 154 ~~~~~~y~~~l~~~~~~ 170 (634)
|..+-.|...-...++.
T Consensus 211 ~~~~~gy~~~~~~~y~~ 227 (418)
T COG1649 211 YPIPFGYDPDTVTLYRY 227 (418)
T ss_pred ccCccccCchHHHHHHh
Confidence 44444444444444444
No 51
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.52 E-value=0.43 Score=58.98 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=60.7
Q ss_pred ceEEEEEeecCCC----CCcceeecccccEEEEEECCCCCCCCCCCeEEEEeeecc-cceeEecccccCCccEEEEEEEe
Q 006713 385 GFLLYVSEFGGKD----YGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSNISLFVLVEN 459 (634)
Q Consensus 385 GyvlYrt~~~~~~----~~~~L~i~~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~-~~~~~~p~~~~~~~~~L~ILven 459 (634)
|--|||++|..+. +...|.+.++...|.||||| +++|.-.+.. ...+.+......+.|+|.|.|.+
T Consensus 109 ~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG---------~~VG~~~g~~~pfefDIT~~l~~G~N~LaV~V~~ 179 (1021)
T PRK10340 109 PTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNG---------QYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQ 179 (1021)
T ss_pred CeEEEEEEEEeCcccccCcEEEEECccceEEEEEECC---------EEeccccCCCccEEEEcchhhCCCccEEEEEEEe
Confidence 5679999997642 34678899999999999999 9999754432 23455553333457999999985
Q ss_pred cCccccCCCccC-----CCCcceeEEeCCE
Q 006713 460 MGRVNYGPYMFD-----EKGILSSVYLGGK 484 (634)
Q Consensus 460 ~Gr~N~g~~~~~-----~KGI~g~V~L~g~ 484 (634)
... +.++++ .-||..+|.|--.
T Consensus 180 ~~d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 180 WAD---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred cCC---CCccccCCccccccccceEEEEEe
Confidence 432 222322 4799999998543
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.27 E-value=2.3 Score=49.76 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHH-HHHHHcCCCEEEE-eccCCCCCCCCCce----------eecchhhHHHHHHHHHHcCceEEecC
Q 006713 26 WEDRL-LRAKALGLNTIQT-YVPWNLHEPKPGKL----------VFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 26 W~~~l-~~~k~~G~N~V~~-yv~W~~hEp~~G~~----------df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
..++| .-+|++|+|+|.+ +|+..-.... -.| .|....||.+|++.|+++||.|||..
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34554 7889999999998 6765321110 012 34455799999999999999999983
No 53
>PRK09936 hypothetical protein; Provisional
Probab=92.11 E-value=2 Score=45.27 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=46.2
Q ss_pred CCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecch-hhHHHHHHHHHHcCceEEec
Q 006713 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI-ADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 19 ~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~-~dl~~fl~~a~~~gL~Vilr 82 (634)
.+++++.|++.++.+|+.||+|+-+ -|...- .=||.+. --|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~yG----~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRYG----DADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeecc----CCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 3689999999999999999998754 555441 1177642 35899999999999999997
No 54
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=91.96 E-value=0.55 Score=58.00 Aligned_cols=87 Identities=20% Similarity=0.226 Sum_probs=58.9
Q ss_pred cceEEEEEeecCCC----C-CcceeecccccEEEEEECCCCCCCCCCCeEEEEeeecc-cceeEecccccCCccEEEEEE
Q 006713 384 FGFLLYVSEFGGKD----Y-GSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWS-NRALSLPNFRCGSNISLFVLV 457 (634)
Q Consensus 384 ~GyvlYrt~~~~~~----~-~~~L~i~~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~-~~~~~~p~~~~~~~~~L~ILv 457 (634)
.|-.|||++|..+. + ...|.+.++...|.||||| +++|.-.+.. ...+.+......+.|+|.|.|
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG---------~~VG~~~g~~~pfefDIT~~l~~G~N~L~V~V 189 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNG---------RWVGYSQDSRLPAEFDLSPFLRAGENRLAVMV 189 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECC---------EEEEeecCCCceEEEEChhhhcCCccEEEEEE
Confidence 47889999997652 2 4678899999999999999 9999764322 233555432234578999988
Q ss_pred EecCccccCCCccC-----CCCcceeEEeC
Q 006713 458 ENMGRVNYGPYMFD-----EKGILSSVYLG 482 (634)
Q Consensus 458 en~Gr~N~g~~~~~-----~KGI~g~V~L~ 482 (634)
..-- .|.++++ ..||..+|.|-
T Consensus 190 ~~~s---dgs~~e~qd~w~~sGI~R~V~L~ 216 (1027)
T PRK09525 190 LRWS---DGSYLEDQDMWRMSGIFRDVSLL 216 (1027)
T ss_pred EecC---CCCccccCCceeeccccceEEEE
Confidence 5321 1222222 36999999984
No 55
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=90.40 E-value=0.47 Score=53.65 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=46.7
Q ss_pred ecCCCCC----HhhH---HHHHHHHHHcCCCEEEE-eccCCC-----CCCCCCc-e-------------eecchhhHHHH
Q 006713 16 LHYFRIL----PQHW---EDRLLRAKALGLNTIQT-YVPWNL-----HEPKPGK-L-------------VFSGIADLVSF 68 (634)
Q Consensus 16 ~hy~r~p----~~~W---~~~l~~~k~~G~N~V~~-yv~W~~-----hEp~~G~-~-------------df~~~~dl~~f 68 (634)
+|.|.|+ .+.| .+.|.-+|++|+++|-+ +++-+. |--.+-. | .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4566655 2445 46778889999999988 454332 2222211 1 23346799999
Q ss_pred HHHHHHcCceEEecC
Q 006713 69 LKLCQKLDLLVMLRP 83 (634)
Q Consensus 69 l~~a~~~gL~Vilrp 83 (634)
++.|+++||+||+..
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999984
No 56
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=90.02 E-value=0.12 Score=59.24 Aligned_cols=31 Identities=35% Similarity=0.718 Sum_probs=27.7
Q ss_pred cccccCCCCccccCCCCChHHHHHHHHHHHhhC
Q 006713 297 DLTSYDYDAPIKESGDVDNPKFKAIRRVVEKFS 329 (634)
Q Consensus 297 ~~TSYDY~APi~E~G~~t~~Ky~~lr~~i~~~~ 329 (634)
.+|||||||||+ |..++|||.++|.++..|.
T Consensus 300 ~atsy~~dap~d--gl~~~pk~ghlk~~hts~d 330 (649)
T KOG0496|consen 300 IATSYDYDAPLD--GLLRQPKYGHLKPLHTSYD 330 (649)
T ss_pred cccccccccccc--hhhcCCCccccccchhhhh
Confidence 589999999999 9999999999998877663
No 57
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.77 E-value=7.3 Score=40.48 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=76.0
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe-cCCCcccceecCCCCccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil-rpgPyi~aEw~~Gg~P~Wl~ 101 (634)
...|++.|+.++++|+..|++.+. ..+ ..+...+++. .++.++.++++++||.|.. .+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~-~~~-~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVD-ETD-DRLSRLDWSR-EQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecC-Ccc-chhhccCCCH-HHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 467999999999999999999532 222 2233445543 4688999999999998653 2211 01111
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCC-Cc-------HHHHHHHHHHHHHhcC
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DD-------KEYLHHLVTLARAHLG 173 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~-~~-------~~y~~~l~~~~~~~~G 173 (634)
+-+.|+.-+++..+.+++.++..+.+ |.++|.+- ..++. ++ .+ .+.++.|.+.+++ .|
T Consensus 81 -------l~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~-~G 146 (279)
T TIGR00542 81 -------LGSKDKAVRQQGLEIMEKAIQLARDL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAAR-AQ 146 (279)
T ss_pred -------CCCcCHHHHHHHHHHHHHHHHHHHHh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHH-cC
Confidence 12235666666667777777777665 66766542 11111 11 11 2345566666666 57
Q ss_pred CceEE
Q 006713 174 KDIIL 178 (634)
Q Consensus 174 ~~vpl 178 (634)
+.+-|
T Consensus 147 v~l~l 151 (279)
T TIGR00542 147 VTLAV 151 (279)
T ss_pred CEEEE
Confidence 65444
No 58
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.55 E-value=0.48 Score=51.68 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=48.9
Q ss_pred EEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 12 ~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
+|=++++...+.+.....|++|+++||..|=| ++|.|+...=+. ...+..+++.|+++||.|++...|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 45567777778999999999999999999888 899998543222 2358999999999999999997765443
No 59
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.97 E-value=6.6 Score=40.09 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
.+++.+++++++|++.|++..++ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 58899999999999999985432 12478999999999999765
No 60
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=88.94 E-value=0.99 Score=48.39 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=46.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEe-------ccCCCCCCCCCceeec--chhhHHHHHHHHHHcCceEEecC
Q 006713 23 PQHWEDRLLRAKALGLNTIQTY-------VPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~y-------v~W~~hEp~~G~~df~--~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
++.-++.|+.+++.|+|+|-+- |.+..-.|..-+..-. ...|+.++++.++++|+++|.|.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 5678899999999999998773 4565555543333222 13799999999999999999994
No 61
>PRK01060 endonuclease IV; Provisional
Probab=88.45 E-value=7.3 Score=40.37 Aligned_cols=94 Identities=17% Similarity=0.323 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceE---EecCCCcccceecCCCCccccc
Q 006713 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV---MLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~V---ilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
.+++.|++++++|++.|++.+.- -+.-..+.++ ..++.++-++++++||.+ .+. +||.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~h-~~~~-------------- 73 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLE---ELNIEAFKAACEKYGISPEDILVH-APYL-------------- 73 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEEe-cceE--------------
Confidence 38899999999999999996531 1211122221 124888999999999973 332 2321
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEc
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Q 146 (634)
+.+-+.|+..+++..+.+++.+...+.+ |-++|-+.
T Consensus 74 -----~nl~~~d~~~r~~s~~~~~~~i~~A~~l----ga~~vv~h 109 (281)
T PRK01060 74 -----INLGNPNKEILEKSRDFLIQEIERCAAL----GAKLLVFH 109 (281)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 1123457788888888888887776655 55655554
No 62
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=88.20 E-value=2 Score=48.70 Aligned_cols=110 Identities=21% Similarity=0.301 Sum_probs=78.4
Q ss_pred ceeCCEeeEEEEEeecCC-----CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcC
Q 006713 2 FRKDGEPFRIIGGDLHYF-----RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (634)
Q Consensus 2 f~~dG~~~~~~~g~~hy~-----r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~g 76 (634)
|.+||.|.++-++.--+. |...+.-+--|+.++++|+|++|+ |.- |...-+.|-++|.+.|
T Consensus 330 fkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad~lG 395 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLADSLG 395 (867)
T ss_pred EEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhhhcc
Confidence 789999999998876542 344566677899999999999998 431 2233589999999999
Q ss_pred ceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccC
Q 006713 77 LLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENE 150 (634)
Q Consensus 77 L~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENE 150 (634)
|.|--.. =+.||- || .+..|++.|+.=.+.-+.+|.. +..||.+-=.||
T Consensus 396 ilVWQD~-MFACAl-------------YP------t~~eFl~sv~eEV~yn~~Rls~-----HpSviIfsgNNE 444 (867)
T KOG2230|consen 396 ILVWQDM-MFACAL-------------YP------TNDEFLSSVREEVRYNAMRLSH-----HPSVIIFSGNNE 444 (867)
T ss_pred ceehhhh-HHHhhc-------------cc------CcHHHHHHHHHHHHHHHHhhcc-----CCeEEEEeCCCc
Confidence 8775431 123442 44 5788999888766656666654 458888876665
No 63
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=88.05 E-value=1.6 Score=42.34 Aligned_cols=124 Identities=15% Similarity=0.051 Sum_probs=73.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeee
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL 109 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~ 109 (634)
|+.++++|+..|+............ ..+++++.++++++||.|..--.+. .... +....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~------~~~~--------~~~~~ 59 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT------NFWS--------PDEEN 59 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE------SSSC--------TGTTS
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc------cccc--------ccccc
Confidence 6789999999999965533222111 3458999999999999966541110 0001 11112
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccc--cCcCCCC------CcHHHHHHHHHHHHHhcCCceEEEE
Q 006713 110 RSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIE--NEFGSYG------DDKEYLHHLVTLARAHLGKDIILYT 180 (634)
Q Consensus 110 R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvE--NEyg~~~------~~~~y~~~l~~~~~~~~G~~vpl~t 180 (634)
++..++ ++.....+.+.+...+.+ |.+.+.+..- +...... .-.+.++.|.+.+++ .|+.+-+-+
T Consensus 60 ~~~~~~-r~~~~~~~~~~i~~a~~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~i~lE~ 132 (213)
T PF01261_consen 60 GSANDE-REEALEYLKKAIDLAKRL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEE-YGVRIALEN 132 (213)
T ss_dssp TTSSSH-HHHHHHHHHHHHHHHHHH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHH-HTSEEEEE-
T ss_pred cCcchh-hHHHHHHHHHHHHHHHHh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhh-hcceEEEec
Confidence 334434 777777788888877766 5677777754 2222211 123466777777766 476655543
No 64
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.95 E-value=9.3 Score=45.72 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHH-HHHHHHcCCCEEEE-eccCC----CCCCCCCce-----eecchhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDR-LLRAKALGLNTIQT-YVPWN----LHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~-l~~~k~~G~N~V~~-yv~W~----~hEp~~G~~-----df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.++ |.-+|++|+|+|.. +|+=. .|--.+..| .|....||.+|++.|+++||.|||..
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 344 47789999999998 55310 111111111 24456799999999999999999983
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.53 E-value=9 Score=39.58 Aligned_cols=128 Identities=20% Similarity=0.137 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec-CCCcccceecCCCCcccccc
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGFPAWLLA 102 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr-pgPyi~aEw~~Gg~P~Wl~~ 102 (634)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++-++++++||.|-.- ++ +.-.
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~---- 78 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRR---- 78 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccC----
Confidence 57999999999999999999643 2221 01122333 246899999999999986532 11 1100
Q ss_pred cCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCC------cHHHHHHHHHHHHHhcCCce
Q 006713 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD------DKEYLHHLVTLARAHLGKDI 176 (634)
Q Consensus 103 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~------~~~y~~~l~~~~~~~~G~~v 176 (634)
+ .+.+.|+.-+++..+.+++++...+.+ |.+.|.+---..+..... -.+.++.|.+++++ .|+.+
T Consensus 79 -~---~~~~~d~~~r~~~~~~~~~~i~~a~~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l 149 (284)
T PRK13210 79 -F---PFGSRDPATRERALEIMKKAIRLAQDL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAA-AQVML 149 (284)
T ss_pred -c---CCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHH-hCCEE
Confidence 1 123456666666666777777776665 556665421101100111 12356666667766 57644
Q ss_pred E
Q 006713 177 I 177 (634)
Q Consensus 177 p 177 (634)
-
T Consensus 150 ~ 150 (284)
T PRK13210 150 A 150 (284)
T ss_pred E
Confidence 3
No 66
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=86.79 E-value=0.76 Score=47.41 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCC----CCCCCce-e----ecchhhHHHHHHHHHHcCceEEecC
Q 006713 26 WEDRLLRAKALGLNTIQTYVPWNLH----EPKPGKL-V----FSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 26 W~~~l~~~k~~G~N~V~~yv~W~~h----Ep~~G~~-d----f~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
..+.|.-+|++|+|+|.+-=++... --.+-.| + |....|+.++++.|+++||+|||..
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 3567889999999999984333221 1111111 1 2335699999999999999999983
No 67
>PRK14706 glycogen branching enzyme; Provisional
Probab=86.67 E-value=13 Score=43.83 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEE-ecc-------CCCCCC--CCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 30 LLRAKALGLNTIQT-YVP-------WNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 30 l~~~k~~G~N~V~~-yv~-------W~~hEp--~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
+.-+|+||+|+|++ +|. |...-- -.=.-.|....|+.+|++.|+++||.|||.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 36789999999997 332 322100 000002334579999999999999999998
No 68
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=86.35 E-value=1.6 Score=51.89 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=44.1
Q ss_pred HhhHHHHHHHHHHcCCCEEEE-ecc-------CCCCCC---CCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEP---KPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~-yv~-------W~~hEp---~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
.+.|++.|..+|++|+|+|.+ .|+ |..+-. .+ .-.|....||.+|++.|+++||.|||..=
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 455788999999999999997 332 332211 00 11355567999999999999999999843
No 69
>PRK12568 glycogen branching enzyme; Provisional
Probab=86.09 E-value=21 Score=42.73 Aligned_cols=57 Identities=18% Similarity=0.340 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCCCCCCCce----eecchhhHHHHHHHHHHcCceEEecCCC
Q 006713 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~-yv~-------W~~hEp~~G~~----df~~~~dl~~fl~~a~~~gL~VilrpgP 85 (634)
++.|.-+|++|+|+|+. +|+ |...- -|-| .|....|+.+|++.|+++||.|||..=|
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34468889999999997 442 43210 0111 3555679999999999999999998444
No 70
>PRK12313 glycogen branching enzyme; Provisional
Probab=84.02 E-value=2.1 Score=50.35 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=39.1
Q ss_pred HHH-HHHHHHcCCCEEEE-ecc-------CCCCCC--CCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDR-LLRAKALGLNTIQT-YVP-------WNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~-l~~~k~~G~N~V~~-yv~-------W~~hEp--~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.+. |.-+|++|+|+|.. +|+ |...-. -.=.-.|....|+.+|++.|+++||.|||..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 344 58999999999997 453 221000 0000035556799999999999999999983
No 71
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=83.76 E-value=2 Score=49.57 Aligned_cols=54 Identities=26% Similarity=0.465 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCC-----CCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDRLLRAKALGLNTIQT-YVP-------WNLH-----EPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~-yv~-------W~~h-----Ep~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.+.|.-+|++|+|+|.+ +|+ |... .+.+ .|....|+.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45789999999999997 442 3211 1111 24456799999999999999999983
No 72
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=82.03 E-value=42 Score=34.52 Aligned_cols=127 Identities=16% Similarity=0.202 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccccc
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~ 103 (634)
..+++.|+.++++|+..|++..... |+-.+ +++ ..+++++-++++++||.|..- +| . .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~-~~-~-----~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIGY-TP-E-----TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEEe-cC-c-----ccCcCcccc--
Confidence 3599999999999999999832110 11011 121 236899999999999987542 21 1 123333222
Q ss_pred CCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCc-C-C----CCCcHHHHHHHHHHHHHhcCCce
Q 006713 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF-G-S----YGDDKEYLHHLVTLARAHLGKDI 176 (634)
Q Consensus 104 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEy-g-~----~~~~~~y~~~l~~~~~~~~G~~v 176 (634)
..++.-+++..+.+++.+...+.+ |.+.|.+-.-..- . . +..-.+.++.|.+.+++ .|+.+
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~~l----Ga~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~l 145 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAKEM----NAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAEN-IGMDL 145 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEE
Confidence 123444555555555555555544 5555544221110 0 0 01122356777777766 46543
No 73
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=81.13 E-value=3.1 Score=44.67 Aligned_cols=72 Identities=26% Similarity=0.285 Sum_probs=58.9
Q ss_pred EEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCc-eeecchhhHHHHHHHHHHcCceEEecCCCcccce
Q 006713 12 IGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGK-LVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (634)
Q Consensus 12 ~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~-~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aE 90 (634)
+|=++.+.|.+.+.=...|++|...||..|-| ++|.|++.. --|.- +.++++.|+++|++||+...|-|.-+
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~~---~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFHR---FKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHHH---HHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 55677788999999999999999999999888 778887542 22333 78999999999999999988877654
No 74
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=80.03 E-value=4.1 Score=43.22 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=48.9
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCC-CCceeecch--hhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPK-PGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~-~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
...+..++.++++|+.||.+=.+.+-...+... -+.|.|+-. -|..++++..+++|++|++..-|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 347788999999999997664444443333321 134555422 389999999999999999987777753
No 75
>PRK09505 malS alpha-amylase; Reviewed
Probab=79.86 E-value=3.9 Score=48.46 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHcCCCEEEE-eccCCCCCCC----CC------------------ceeecchhhHHHHHHHHHHcCceEEe
Q 006713 25 HWEDRLLRAKALGLNTIQT-YVPWNLHEPK----PG------------------KLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~-yv~W~~hEp~----~G------------------~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
-+.+.|.-+|+||+|+|-+ .++=+.|... .| .-.|....|++++++.|+++||+||+
T Consensus 231 Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~Vil 310 (683)
T PRK09505 231 GLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILF 310 (683)
T ss_pred HHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3678899999999999987 4543333211 11 11244567999999999999999999
Q ss_pred cC
Q 006713 82 RP 83 (634)
Q Consensus 82 rp 83 (634)
..
T Consensus 311 D~ 312 (683)
T PRK09505 311 DV 312 (683)
T ss_pred EE
Confidence 84
No 76
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=79.73 E-value=3.8 Score=47.33 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcCCCEEEE-eccCCCCCCC-CCcee----------ecchhhHHHHHHHHHHcCceEEecC
Q 006713 25 HWEDRLLRAKALGLNTIQT-YVPWNLHEPK-PGKLV----------FSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~-yv~W~~hEp~-~G~~d----------f~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
-+.++|.-+|++|+++|-+ +|+-+ |. ...|+ |....|+.++++.|+++||+|||..
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4568899999999999988 45422 11 11232 3445799999999999999999984
No 77
>PRK10785 maltodextrin glucosidase; Provisional
Probab=79.44 E-value=4 Score=47.68 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHcCCCEEEE-eccCC--CCCCCCCce-----eecchhhHHHHHHHHHHcCceEEec
Q 006713 25 HWEDRLLRAKALGLNTIQT-YVPWN--LHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~-yv~W~--~hEp~~G~~-----df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
-..+.|.-+|++|+|+|-+ +|+=+ -|---...| .|....|+.++++.|++.||+|||.
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD 245 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLD 245 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3467888999999999998 56532 121111111 2445579999999999999999997
No 78
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=79.28 E-value=3.6 Score=48.09 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCEEEE-ecc---------------CCCCC-----CCCCcee----ec--chhhHHHHHHHHHHcCceEE
Q 006713 28 DRLLRAKALGLNTIQT-YVP---------------WNLHE-----PKPGKLV----FS--GIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 28 ~~l~~~k~~G~N~V~~-yv~---------------W~~hE-----p~~G~~d----f~--~~~dl~~fl~~a~~~gL~Vi 80 (634)
+.|.-+|++|+|+|.+ +|+ |...- |. +.|- +- ...|+.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999998 443 32221 10 1111 10 13689999999999999999
Q ss_pred ecC
Q 006713 81 LRP 83 (634)
Q Consensus 81 lrp 83 (634)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 983
No 79
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=79.23 E-value=2.3 Score=43.96 Aligned_cols=52 Identities=15% Similarity=0.368 Sum_probs=38.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
+...++.|+.+|++||++|++ ..|..+.+- .+..++|+.|+++|++|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~~-~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLPE-EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS---H-HHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCCH-HHHHHHHHHHHHCCCEEeeccc
Confidence 566789999999999999998 455555543 3578999999999999999966
No 80
>PLN02960 alpha-amylase
Probab=79.23 E-value=4.1 Score=49.11 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCCCC--CCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDRLLRAKALGLNTIQT-YVP-------WNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~-yv~-------W~~hEp--~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
++.|.-+|++|+|+|++ .|+ |...-. -.=.-.|....|+.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45699999999999998 453 332100 0000123445789999999999999999984
No 81
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=78.65 E-value=3.3 Score=47.78 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=43.1
Q ss_pred HhhHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCcee----------ecchhhHHHHHHHHHHcCceEEecC
Q 006713 23 PQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLV----------FSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~-yv~W~~hEp~~G~~d----------f~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
-.-+.+.|.-+|++|+|+|-+ +++=+-.. ...|+ |....|+.++++.|+++||+|||..
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 455678899999999999988 34432110 11232 4455799999999999999999984
No 82
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=77.84 E-value=5.5 Score=45.30 Aligned_cols=101 Identities=11% Similarity=0.197 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCC---CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPK---PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~---~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
..+.++++.||++|++.-|.-|.|+..=|. .+.-+-.|..=...+|+...++|+...+-. . -| .+|.+|
T Consensus 91 h~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL----f-Hw---DlPq~L 162 (524)
T KOG0626|consen 91 HRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL----F-HW---DLPQAL 162 (524)
T ss_pred hhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE----e-cC---CCCHHH
Confidence 468999999999999999999999998884 356788886667888999999999866651 1 13 589999
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhc
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (634)
.+.+-+..-+..=..|+++++-=|++...+++
T Consensus 163 eDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK 194 (524)
T KOG0626|consen 163 EDEYGGWLNPEIVEDFRDYADLCFQEFGDRVK 194 (524)
T ss_pred HHHhccccCHHHHHHHHHHHHHHHHHhcccce
Confidence 87655543332333455555554444444443
No 83
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=77.64 E-value=4.9 Score=46.24 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=41.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEE-eccCCCCCCC-CCcee----------ecchhhHHHHHHHHHHcCceEEec
Q 006713 23 PQHWEDRLLRAKALGLNTIQT-YVPWNLHEPK-PGKLV----------FSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~-yv~W~~hEp~-~G~~d----------f~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
-.-+.+.|.-+|++|+|+|-+ +|+=+ +. ...|+ |....|+.++++.|+++||+|||.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345678899999999999987 34311 11 12222 444579999999999999999997
No 84
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=77.53 E-value=18 Score=39.96 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCCCHhhHHHHHHHHHHcCCCEEEE-------eccCCCCCCCCCceeecchhh-HHHHHHHHHHcCceEEecCCCcccce
Q 006713 19 FRILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFSGIAD-LVSFLKLCQKLDLLVMLRPGPYICAE 90 (634)
Q Consensus 19 ~r~p~~~W~~~l~~~k~~G~N~V~~-------yv~W~~hEp~~G~~df~~~~d-l~~fl~~a~~~gL~VilrpgPyi~aE 90 (634)
.+..++.| .+.+|++|+..|-. +-.|+..-..-..-+-...+| +.++.+.|+++||++-+=-.+ -+
T Consensus 79 ~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~D 152 (384)
T smart00812 79 EKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FD 152 (384)
T ss_pred hhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HH
Confidence 34556666 45889999996543 233555432211111111344 567889999999988774222 25
Q ss_pred ecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccc
Q 006713 91 WDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (634)
Q Consensus 91 w~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (634)
|.. |.|... .+.-..+.+.+.|.++++.|+.+|.+.+..+
T Consensus 153 W~~---p~y~~~-~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y 192 (384)
T smart00812 153 WFN---PLYAGP-TSSDEDPDNWPRFQEFVDDWLPQLRELVTRY 192 (384)
T ss_pred hCC---Cccccc-cccccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 543 444321 1111123456788888888888888888664
No 85
>PLN02361 alpha-amylase
Probab=77.40 E-value=5.5 Score=44.21 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC---CCCCCCc-e----eecchhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGK-L----VFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~---hEp~~G~-~----df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.+.|.-++++|+++|-+.=+... |--.+.. | .|....||.++++.|+++||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 66778889999999998533322 2222222 2 24445799999999999999999974
No 86
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.07 E-value=39 Score=34.93 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec-CCCcccceecCCCCcccccc
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGFPAWLLA 102 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr-pgPyi~aEw~~Gg~P~Wl~~ 102 (634)
..|++.++.++++|+..|++.+. ..++ ....++++. .+++++.++++++||.|..- ++.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~~-~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWSR-EQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCCH-HHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 46999999999999999999532 1111 011223332 35889999999999987532 1100 0010
Q ss_pred cCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEE
Q 006713 103 KKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (634)
Q Consensus 103 ~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~ 145 (634)
+-+.++.-++...+.+++.+...+.+ |.++|.+
T Consensus 86 ------~~~~~~~~r~~~~~~~~~~i~~a~~l----G~~~i~~ 118 (283)
T PRK13209 86 ------LGSEDDAVRAQALEIMRKAIQLAQDL----GIRVIQL 118 (283)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEE
Confidence 11345666666667777777777665 6677655
No 87
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=76.55 E-value=38 Score=34.66 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=37.6
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 16 ~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
+.|-++| +++.|++++++||..|++.. +. ..|++++.++++++||.|..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4454454 78889999999999999931 11 14689999999999999864
No 88
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=76.24 E-value=71 Score=33.03 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=61.1
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHc-CceEEecCCCcccceecCCCCccc
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKL-DLLVMLRPGPYICAEWDLGGFPAW 99 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~-gL~VilrpgPyi~aEw~~Gg~P~W 99 (634)
++ ..|++.|+.+|++|+..|++.+........ ......+++++.++++++ ++.+.+. +||.
T Consensus 8 ~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------ 69 (279)
T cd00019 8 AG-FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL------------ 69 (279)
T ss_pred cc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------
Confidence 44 789999999999999999997643211111 111345799999999999 7666554 2221
Q ss_pred ccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccc
Q 006713 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (634)
Q Consensus 100 l~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN 149 (634)
+ .+.+.++.-+++....+++.++..+.+ |-+.|.+...+
T Consensus 70 ~-------~~~~~~~~~r~~~~~~~~~~i~~A~~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 I-------NLASPDKEKREKSIERLKDEIERCEEL----GIRLLVFHPGS 108 (279)
T ss_pred e-------ccCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEECCCC
Confidence 0 112234444555555566666666554 55666665544
No 89
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=75.32 E-value=49 Score=34.01 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=64.2
Q ss_pred EeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCce-eecchhhHHHHHHHHHHcCceEEecCCCcccceec
Q 006713 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL-VFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWD 92 (634)
Q Consensus 14 g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~-df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~ 92 (634)
|+-+..+-+ -++.|+.+.++|++.|++. ..+|..-.- +++- .+++++.++++++||.|.+. +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~~-~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLSE-ETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCCH-HHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 333444444 4478999999999999993 444432110 2221 35899999999999987654 2331
Q ss_pred CCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEc
Q 006713 93 LGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (634)
Q Consensus 93 ~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Q 146 (634)
+.+.+.|+..+++..+++++.+...+.+ |.++|.+.
T Consensus 69 --------------~nl~s~d~~~r~~~~~~l~~~i~~A~~l----Ga~~vv~h 104 (273)
T smart00518 69 --------------INLASPDKEKVEKSIERLIDEIKRCEEL----GIKALVFH 104 (273)
T ss_pred --------------ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEc
Confidence 1134557777777777777777766654 55666553
No 90
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=74.38 E-value=9 Score=40.74 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCCCHhhHHHHHHHHHHcCCC--EEEEeccCCCCCCCCCceeecc--hhhHHHHHHHHHHcCceEEecCCCccc
Q 006713 19 FRILPQHWEDRLLRAKALGLN--TIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 19 ~r~p~~~W~~~l~~~k~~G~N--~V~~yv~W~~hEp~~G~~df~~--~~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
.....+.-++.++++++.|+. +|-+-+.|- ..-|.|.|+- .-|..++++..++.|+++++..=|+|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~ 95 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFIN 95 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeC
Confidence 456788899999999999965 666666663 3457676653 348999999999999999998777765
No 91
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=73.88 E-value=8.6 Score=44.94 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=42.7
Q ss_pred HhhHHHHHHHHHHcCCCEEEE-ecc-------CCCCCCCCCce----eecchhhHHHHHHHHHHcCceEEec
Q 006713 23 PQHWEDRLLRAKALGLNTIQT-YVP-------WNLHEPKPGKL----VFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~-yv~-------W~~hEp~~G~~----df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.+.-++.|.-+|+||+++|+. +|. |..--. |-| .|..--|+.+||+.|+++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~--g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGT--GYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcc--eeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 566688899999999999997 332 443210 111 2333469999999999999999998
No 92
>PRK09989 hypothetical protein; Provisional
Probab=73.76 E-value=56 Score=33.47 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
-.+++|++++++||..|++..+|. .+.+++.++++++||.|..-
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~~ 59 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLALF 59 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEEe
Confidence 367899999999999999943332 23678888899999998763
No 93
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=73.60 E-value=22 Score=39.41 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=71.0
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCC----Cceeecc---hhhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKP----GKLVFSG---IADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 17 hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~----G~~df~~---~~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
+|+.+..+...+.+++++++|++.+-+---|....... |.+.-+- -.-|..+++.+++.||+.=|...|.+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46677788889999999999999999988886542222 4342221 0129999999999999988887776654
Q ss_pred eec--CCCCcccccccCCCee---------eccCCHHHHHHHHHHHHHHHHHh
Q 006713 90 EWD--LGGFPAWLLAKKPALK---------LRSSDRAYLQLVERWWGVLLPKI 131 (634)
Q Consensus 90 Ew~--~Gg~P~Wl~~~~p~~~---------~R~~~~~y~~~~~~~~~~l~~~l 131 (634)
.=. .-..|.|+.+ .++.. +=.++|..++++...+.+++...
T Consensus 131 ~~S~l~~~hPdw~l~-~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~ 182 (394)
T PF02065_consen 131 PDSDLYREHPDWVLR-DPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREW 182 (394)
T ss_dssp SSSCHCCSSBGGBTC-CTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHhCccceee-cCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 311 1147999987 34321 11356766666666555555443
No 94
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=72.30 E-value=14 Score=38.34 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=50.4
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCce--eecc--hhhHHHHHHHHHHcCceEEecCCCcc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKL--VFSG--IADLVSFLKLCQKLDLLVMLRPGPYI 87 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~--df~~--~~dl~~fl~~a~~~gL~VilrpgPyi 87 (634)
..++..+.++.+++.||.+=.+.+-+...+. -+.| +|+- .-|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5778899999999999996666666555543 3566 4432 34899999999999999999977776
No 95
>PRK14705 glycogen branching enzyme; Provisional
Probab=71.95 E-value=8.6 Score=48.35 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-------CCCCC--CCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 27 EDRLLRAKALGLNTIQT-YVP-------WNLHE--PKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~-yv~-------W~~hE--p~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
++.|.-+|+||+|+|+. +|+ |...- ...=.-.|....|+.+|++.|+++||.|||.
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 33468899999999997 452 43110 0000113445679999999999999999998
No 96
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.54 E-value=42 Score=36.00 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=81.1
Q ss_pred EeecCCCCCHhhHHHHHHHHHHcCCCEEEEecc--CCCC---CCC------------------------CCceeecchhh
Q 006713 14 GDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP--WNLH---EPK------------------------PGKLVFSGIAD 64 (634)
Q Consensus 14 g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~--W~~h---Ep~------------------------~G~~df~~~~d 64 (634)
-+=|| +|.+...+.|+.|...++|++..++- |.+- .|. .|.|. ..|
T Consensus 9 ~aR~~--~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~d 83 (326)
T cd06564 9 VGRKY--YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEE 83 (326)
T ss_pred ccCCC--CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHH
Confidence 33345 47899999999999999999998654 3221 111 11221 257
Q ss_pred HHHHHHHHHHcCceEEecCCCcccceecCCCC-cccccccCCCeeec------------cCCHHHHHHHHHHHHHHHHHh
Q 006713 65 LVSFLKLCQKLDLLVMLRPGPYICAEWDLGGF-PAWLLAKKPALKLR------------SSDRAYLQLVERWWGVLLPKI 131 (634)
Q Consensus 65 l~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~-P~Wl~~~~p~~~~R------------~~~~~y~~~~~~~~~~l~~~l 131 (634)
+.++++.|+++|+.||..+- .=|. =+|+.. +|+...+ -.+| .+-++++.|+..+
T Consensus 84 i~eiv~yA~~rgI~vIPEID--------~PGH~~a~~~~-~pel~~~~~~~~~~~~~l~~~~~----~t~~f~~~l~~E~ 150 (326)
T cd06564 84 FKELIAYAKDRGVNIIPEID--------SPGHSLAFTKA-MPELGLKNPFSKYDKDTLDISNP----EAVKFVKALFDEY 150 (326)
T ss_pred HHHHHHHHHHcCCeEeccCC--------CcHHHHHHHHh-hHHhcCCCcccCCCcccccCCCH----HHHHHHHHHHHHH
Confidence 99999999999999998721 1121 123332 3332222 1333 3444555555555
Q ss_pred ccccccCCCcEEEEccc-cCcCC---C-CCcHHHHHHHHHHHHHhcCCceEEE
Q 006713 132 APLLYDIGGPIVMVQIE-NEFGS---Y-GDDKEYLHHLVTLARAHLGKDIILY 179 (634)
Q Consensus 132 ~~~~~~~ggpII~~QvE-NEyg~---~-~~~~~y~~~l~~~~~~~~G~~vpl~ 179 (634)
++..- ..++.| .|. -|+-. . ..-..|+..+.+.+++ .|..+.++
T Consensus 151 ~~~f~-~~~~~~--HiGgDE~~~~~~~~~~~~~f~~~~~~~v~~-~gk~~~~W 199 (326)
T cd06564 151 LDGFN-PKSDTV--HIGADEYAGDAGYAEAFRAYVNDLAKYVKD-KGKTPRVW 199 (326)
T ss_pred HHhcC-CCCCEE--EeccccccccCccHHHHHHHHHHHHHHHHH-cCCeEEEe
Confidence 55431 012322 221 12211 0 1225688888888888 58776655
No 97
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=71.22 E-value=51 Score=36.39 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=59.5
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEe----ccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec-CCCcccceecCCCC
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTY----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGF 96 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~y----v~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr-pgPyi~aEw~~Gg~ 96 (634)
|+....+++++++++|+..|+.. ++|..-.. .-..+++++-++++++||.|..- ++-+. -
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~-------e~~~~~~~lk~~L~~~GL~v~~v~~nl~~--------~ 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQ-------ERDQIVRRFKKALDETGLKVPMVTTNLFS--------H 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChh-------HHHHHHHHHHHHHHHhCCeEEEeeccccC--------C
Confidence 44567899999999999999974 22322111 01345788999999999997642 21010 0
Q ss_pred cccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEE
Q 006713 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMV 145 (634)
Q Consensus 97 P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~ 145 (634)
|.|. ..-+-+.|+..+++.-+.+++.+..-+.+ |.+.|.+
T Consensus 95 ~~~~-----~g~las~d~~vR~~ai~~~kraId~A~eL----Ga~~v~v 134 (382)
T TIGR02631 95 PVFK-----DGGFTSNDRSVRRYALRKVLRNMDLGAEL----GAETYVV 134 (382)
T ss_pred cccc-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCEEEE
Confidence 1121 11234457777766666666666666554 5554433
No 98
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.13 E-value=8.9 Score=39.51 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCC
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgP 85 (634)
....++.++.+|++||++|++ ..|..+++- .+..++|+.++++||+|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~~-~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEISL-EERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCCH-HHHHHHHHHHHhCCCeEeccccc
Confidence 356678888999999999988 456666653 36889999999999999988764
No 99
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=70.96 E-value=30 Score=36.73 Aligned_cols=59 Identities=12% Similarity=0.225 Sum_probs=46.6
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCC----------ceeecchhhHHHHHHHHHHcCceEE
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPG----------KLVFSGIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~----W~~hEp------~~G----------~~df~~~~dl~~fl~~a~~~gL~Vi 80 (634)
.+.+...+.|+.|...++|+.+.++- |.+--+ +.| .|.- .|+.++++.|+++|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 46799999999999999999999987 754321 122 2322 469999999999999999
Q ss_pred ec
Q 006713 81 LR 82 (634)
Q Consensus 81 lr 82 (634)
..
T Consensus 90 PE 91 (303)
T cd02742 90 PE 91 (303)
T ss_pred Ee
Confidence 87
No 100
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=70.57 E-value=18 Score=38.19 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=46.5
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCC--------CCCceeecch--hhHHHHHHHHHHcCceEEecCCC
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEP--------KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGP 85 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp--------~~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgP 85 (634)
+.++-++.++++|+.||.+=-+++-...|.- .-+.|+|+-. -|..++++..++.|++|++..=|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 5777899999999999986666554333321 2245666532 48999999999999999987533
No 101
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=70.29 E-value=9.5 Score=40.85 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=49.6
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCC--ceeecchh--hHHHHHHHHHHcCceEEecCCCccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG--KLVFSGIA--DLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G--~~df~~~~--dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
..++-++.++++++.||.+=.+.+-|.... ..+ .|+|+-.+ |..++|+.+++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 467778999999999988766666655443 234 66665433 8999999999999999997656553
No 102
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=69.98 E-value=15 Score=29.36 Aligned_cols=55 Identities=15% Similarity=0.025 Sum_probs=43.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
|..-.+.++.+.+.|+|...+|++ .++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~--~~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIA--DTSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEE--ecCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 456778899999999999999973 2333 58888866 5678999999999988754
No 103
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=69.80 E-value=26 Score=33.82 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCC------CCCceeecchhhHHHHHHHHHHcCceEEec-CCCcccceecCCCC
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEP------KPGKLVFSGIADLVSFLKLCQKLDLLVMLR-PGPYICAEWDLGGF 96 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp------~~G~~df~~~~dl~~fl~~a~~~gL~Vilr-pgPyi~aEw~~Gg~ 96 (634)
++.++..+.+++.|+..+....+-+...+ .+.. .-.....+.+.+++|++.|...|.- +|. .
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------~ 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------Y 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT----------E
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc----------c
Confidence 45677788889999997776544333332 1112 2222346999999999999975544 332 0
Q ss_pred cccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCCcHHHHHHHHHHHHH
Q 006713 97 PAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (634)
Q Consensus 97 P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~ 170 (634)
+.+ + ......-++.+.+.+++++++.+++ | +.+-+||..+.......-++.+.+++++
T Consensus 96 ~~~-----~----~~~~~~~~~~~~~~l~~l~~~a~~~----g---v~i~lE~~~~~~~~~~~~~~~~~~~l~~ 153 (213)
T PF01261_consen 96 PSG-----P----EDDTEENWERLAENLRELAEIAEEY----G---VRIALENHPGPFSETPFSVEEIYRLLEE 153 (213)
T ss_dssp SSS-----T----TSSHHHHHHHHHHHHHHHHHHHHHH----T---SEEEEE-SSSSSSSEESSHHHHHHHHHH
T ss_pred ccc-----c----CCCHHHHHHHHHHHHHHHHhhhhhh----c---ceEEEecccCccccchhhHHHHHHHHhh
Confidence 000 1 1233456677778888888888765 2 3467889887654221003445555555
No 104
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=69.18 E-value=38 Score=38.73 Aligned_cols=162 Identities=19% Similarity=0.360 Sum_probs=88.9
Q ss_pred EeeEEEEEeec------CCCCCHhhHHHHHHHH---HHcCCCEEEEecc---CCCCC----CCCCce---eecchh-hH-
Q 006713 7 EPFRIIGGDLH------YFRILPQHWEDRLLRA---KALGLNTIQTYVP---WNLHE----PKPGKL---VFSGIA-DL- 65 (634)
Q Consensus 7 ~~~~~~~g~~h------y~r~p~~~W~~~l~~~---k~~G~N~V~~yv~---W~~hE----p~~G~~---df~~~~-dl- 65 (634)
|++.=+||++= ..+++++.=++.|+.+ +-+|++.+|+.|- .+.++ ..|+.| +|+-.+ |.
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHT
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchh
Confidence 34455667653 2345544434444443 4589999999876 22222 123333 233222 32
Q ss_pred --HHHHHHHHHc--CceEEecCCCcccceecCCCCcccccccCC---Ceeec-cCCHHHHHHHHHHHHHHHHHhcccccc
Q 006713 66 --VSFLKLCQKL--DLLVMLRPGPYICAEWDLGGFPAWLLAKKP---ALKLR-SSDRAYLQLVERWWGVLLPKIAPLLYD 137 (634)
Q Consensus 66 --~~fl~~a~~~--gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p---~~~~R-~~~~~y~~~~~~~~~~l~~~l~~~~~~ 137 (634)
-.+|+.|++. +|+++.-| | -.|+|++.... .-.++ ...+.|.+....||.+-++.++++
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~--- 220 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------W---SPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE--- 220 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT---
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC---
Confidence 3578877763 57777664 4 37999987421 12244 234578899999999988888754
Q ss_pred CCCcEEEEccccCcCC-------CC-------CcHHHHH-HHHHHHHHhcCC--ceEEEEecC
Q 006713 138 IGGPIVMVQIENEFGS-------YG-------DDKEYLH-HLVTLARAHLGK--DIILYTTDG 183 (634)
Q Consensus 138 ~ggpII~~QvENEyg~-------~~-------~~~~y~~-~l~~~~~~~~G~--~vpl~t~dg 183 (634)
|=+|-++-+-||... |. ..++|+. +|..++++ .|. ++.|+..|-
T Consensus 221 -GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~-~~~g~d~kI~~~D~ 281 (496)
T PF02055_consen 221 -GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRK-AGLGKDVKILIYDH 281 (496)
T ss_dssp -T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHT-STT-TTSEEEEEEE
T ss_pred -CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHh-cCCCCceEEEEEec
Confidence 779999999999863 21 1356775 48888887 454 888877664
No 105
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=68.45 E-value=9.4 Score=44.16 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHHcCCCEEEEe-ccCCCCCCCCCce---e--ecch-------hhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTY-VPWNLHEPKPGKL---V--FSGI-------ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~y-v~W~~hEp~~G~~---d--f~~~-------~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
.+.-++.|..|+...||.|+.| ..|.+|.|-|+.= + |... .=+...|+.|++.|++++.=-- |+|
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynm--iya 194 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNM--IYA 194 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEE--SSE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHh--hhc
Confidence 4677899999999999999999 8899999976544 2 2211 2478999999999999876421 232
Q ss_pred ee----cCCCCcccccccCC
Q 006713 90 EW----DLGGFPAWLLAKKP 105 (634)
Q Consensus 90 Ew----~~Gg~P~Wl~~~~p 105 (634)
.- ..|=.|.|.+-+++
T Consensus 195 a~~~~~~~gv~~eW~ly~d~ 214 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYKDD 214 (559)
T ss_dssp EETT--S--SS-GGBEEESS
T ss_pred cccCcccccCCchhhhhhcc
Confidence 22 24456888875433
No 106
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=68.10 E-value=76 Score=34.56 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=45.6
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCceee----------------c---chhhHHHHHHH
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLVF----------------S---GIADLVSFLKL 71 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~----W~~hEp------~~G~~df----------------~---~~~dl~~fl~~ 71 (634)
+|.+...+.|+.|...++|+.+.++. |.+--+ +.|.|.- . -..|+.++++.
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 94 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAY 94 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHH
Confidence 46899999999999999999998863 432211 1222210 0 13579999999
Q ss_pred HHHcCceEEec
Q 006713 72 CQKLDLLVMLR 82 (634)
Q Consensus 72 a~~~gL~Vilr 82 (634)
|+++|+.||..
T Consensus 95 A~~rgI~VIPE 105 (357)
T cd06563 95 AAERGITVIPE 105 (357)
T ss_pred HHHcCCEEEEe
Confidence 99999999987
No 107
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=67.26 E-value=6 Score=38.49 Aligned_cols=50 Identities=28% Similarity=0.418 Sum_probs=32.5
Q ss_pred ceEEeeCCCeEEEEEECCcccccccCCCCC------cceeecC---cccccccccEEEEEE
Q 006713 553 DTYLSFSGWGKGIAFVNEFNLGRFWPSFGP------QCDLYVP---APILRHGENLVVIFE 604 (634)
Q Consensus 553 Dt~Ld~~g~~KG~v~VNG~nlGRYW~~iGP------Q~tlYVP---~~~Lk~G~N~IivfE 604 (634)
...|..++.++=.+||||..+|+-- +.| ...+|.- .++|++|+|.|.|.=
T Consensus 5 ~A~l~isa~g~Y~l~vNG~~V~~~~--l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~l 63 (172)
T PF08531_consen 5 SARLYISALGRYELYVNGERVGDGP--LAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWL 63 (172)
T ss_dssp --EEEEEEESEEEEEETTEEEEEE----------BTTEEEEEEEE-TTT--TTEEEEEEEE
T ss_pred EEEEEEEeCeeEEEEECCEEeeCCc--cccccccCCCceEEEEEeChHHhCCCCCEEEEEE
Confidence 4567777888899999999999754 334 3344532 789999999988853
No 108
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.10 E-value=17 Score=38.98 Aligned_cols=66 Identities=5% Similarity=-0.003 Sum_probs=47.7
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC---CCceeecc--hhhHHHHHHHHHHcCceEEecCCCccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK---PGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~---~G~~df~~--~~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
.++-.+.++++++.+|.+=.+.+-+....-. ...|+|+- .-|..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 4577899999999999876666543333221 22355542 248999999999999999998777765
No 109
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=66.57 E-value=18 Score=43.94 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=46.5
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEe-ccCCCCCCCCC---ce---e-------ecchhhHHHHHHHHHHcCceEEecCCCc
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTY-VPWNLHEPKPG---KL---V-------FSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~y-v~W~~hEp~~G---~~---d-------f~~~~dl~~fl~~a~~~gL~VilrpgPy 86 (634)
..-+.+.+.|.-++++|+|+|-+- ++ +..+| .| | |.+..|+.+|++.|+++||.||+..=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 456889999999999999999873 32 11112 11 2 3456799999999999999999985543
No 110
>PLN00196 alpha-amylase; Provisional
Probab=66.48 E-value=16 Score=40.95 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCEEEEe-ccCCC--CCCCCCc-ee-----ecchhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDRLLRAKALGLNTIQTY-VPWNL--HEPKPGK-LV-----FSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~y-v~W~~--hEp~~G~-~d-----f~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.+.|.-+|++|+++|-+. ++=+. |--.+.. |+ |....||.++++.|+++||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 678888999999999885 33221 2222222 22 3334699999999999999999984
No 111
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=66.27 E-value=17 Score=38.39 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred EEEEEeecCCCCCH-hhHH---HHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCC
Q 006713 10 RIIGGDLHYFRILP-QHWE---DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (634)
Q Consensus 10 ~~~~g~~hy~r~p~-~~W~---~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgP 85 (634)
+.+++..|+..-|. ...+ ++|++-.++|.+.+-|-.+ ||.+- +.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~~---~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVDN---FLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHHH---HHHHHHHHHHcCCCCCEEeec
Confidence 56788888766441 2222 3444444699999998444 33333 789999999997654334443
Q ss_pred ccc---------ceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhcc
Q 006713 86 YIC---------AEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 86 yi~---------aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (634)
.-+ .+|..--+|.|+.++.. ...+++....+.--.+..+++..+..
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~--~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE--PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 56766668999987321 11233445556666666777777755
No 112
>PRK12677 xylose isomerase; Provisional
Probab=66.13 E-value=46 Score=36.77 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=56.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEe----ccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe-cCCCcccceecCCCCc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTY----VPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML-RPGPYICAEWDLGGFP 97 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~y----v~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil-rpgPyi~aEw~~Gg~P 97 (634)
+-.+++.+++++++|+..|+.. ++|..-. .+....+.++.++++++||.|.. .|.-+. -|
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~-------~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~--------~p 94 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFHDDDLVPFGATD-------AERDRIIKRFKKALDETGLVVPMVTTNLFT--------HP 94 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEecccccCCCCCCh-------hhhHHHHHHHHHHHHHcCCeeEEEecCCCC--------Cc
Confidence 3457899999999999999984 2222111 11123488999999999999764 332111 12
Q ss_pred ccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccc
Q 006713 98 AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (634)
Q Consensus 98 ~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (634)
.+- ..-+-+.|+.-++...+.+.+.+..-+.+
T Consensus 95 ~~~-----~g~lts~d~~~R~~Ai~~~~r~IdlA~eL 126 (384)
T PRK12677 95 VFK-----DGAFTSNDRDVRRYALRKVLRNIDLAAEL 126 (384)
T ss_pred ccc-----CCcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 111 01234557777777666677777666654
No 113
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=66.06 E-value=9.6 Score=48.24 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCEEEE-eccCCCCCCC---CCc-----ee----------ec--chhhHHHHHHHHHHcCceEEec
Q 006713 28 DRLLRAKALGLNTIQT-YVPWNLHEPK---PGK-----LV----------FS--GIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 28 ~~l~~~k~~G~N~V~~-yv~W~~hEp~---~G~-----~d----------f~--~~~dl~~fl~~a~~~gL~Vilr 82 (634)
+.|.-+|++|+|+|.+ +|+=...|.. .|. |+ |. ...++.++++.|+++||.|||.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILD 266 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILD 266 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEE
Confidence 4567899999999998 5553222211 110 21 33 5678999999999999999998
No 114
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=66.04 E-value=9.8 Score=45.22 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCEEEE-eccCCCCC---CCCC-----cee----------e---cchhhHHHHHHHHHHcCceEEecC
Q 006713 29 RLLRAKALGLNTIQT-YVPWNLHE---PKPG-----KLV----------F---SGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~-yv~W~~hE---p~~G-----~~d----------f---~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.|.-+|++|+|+|.+ +|+=...+ ...| .|+ | ....|+.++++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999998 45411111 1111 111 1 124689999999999999999983
No 115
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=65.84 E-value=15 Score=44.46 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=45.8
Q ss_pred CHhhHHHHHHHHHHcCCCEEEE-eccC----CCCCCCCC-----ceeecchhhHHHHHHHHHHcCceEEecCCC
Q 006713 22 LPQHWEDRLLRAKALGLNTIQT-YVPW----NLHEPKPG-----KLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~-yv~W----~~hEp~~G-----~~df~~~~dl~~fl~~a~~~gL~VilrpgP 85 (634)
.-+.+.+.|.-++++|+++|-+ +|+= +.|--..- .-.|.+..|+.+|++.|+++||.||+..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4577999999999999999987 3321 11111110 112456789999999999999999998544
No 116
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=65.47 E-value=13 Score=40.18 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=55.0
Q ss_pred ecCCCC---CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecch--hhH--HHHHHHHHHcCceEEecCCCccc
Q 006713 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADL--VSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 16 ~hy~r~---p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~--~dl--~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
+|..|+ ..+..++.++++++.||.+=.+.+-+..+.. -+.|+|+.. -|. .++++..++.|++|++..=|+++
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 344443 4778899999999999987666655444433 366666643 377 99999999999999999888887
Q ss_pred c
Q 006713 89 A 89 (634)
Q Consensus 89 a 89 (634)
-
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 5
No 117
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=65.04 E-value=59 Score=35.09 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCcee--------ecchhhHHHHHHHHHHcCceEEec
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLV--------FSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~----W~~hEp------~~G~~d--------f~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.|.+...+.|+.|...++|+.+.++- |.+.-+ ..|.+. |=-..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 47899999999999999999999874 654322 123321 101357999999999999999987
No 118
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.95 E-value=1.2e+02 Score=32.33 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=43.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEecc----CCCCCCC----CCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVP----WNLHEPK----PGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~----W~~hEp~----~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.+...+.|+.|...|+|.+..|+- +.-+ |+ +|.|. ..|+.++++.|+++|+.||...
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCcC---HHHHHHHHHHHHHcCCEEEecC
Confidence 688899999999999999998753 3222 22 23332 2479999999999999999874
No 119
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=64.86 E-value=11 Score=45.93 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCceEEecC
Q 006713 63 ADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 63 ~dl~~fl~~a~~~gL~Vilrp 83 (634)
.++.++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999983
No 120
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=64.80 E-value=24 Score=39.09 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=41.9
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
...+.|+++|+.+|++||....+-+- ....+.. .-|...++.|++.|+++.+-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 36899999999999999999888443 1222222 238899999999999998884
No 121
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=64.79 E-value=14 Score=47.80 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCC---ce----------eecchhhHHHHHHHHHHcCceEEecCCC
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPG---KL----------VFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G---~~----------df~~~~dl~~fl~~a~~~gL~VilrpgP 85 (634)
-+-+.|.+.|.-+|++|+|+|-+-=++. ..+| -| .|.+..|+.++++.|+++||.||+..=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~---a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILK---ARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcC---CCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3468899999999999999998732222 2222 12 2446679999999999999999998544
No 122
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=62.72 E-value=16 Score=39.42 Aligned_cols=68 Identities=4% Similarity=-0.096 Sum_probs=51.7
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecch--hhHHHHHHHHHHcCceEEecCCCcccce
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgPyi~aE 90 (634)
..++-++.++++++.||.+=.+.+-+... ...+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 46777899999999999876665554322 34556666542 3899999999999999999988888753
No 123
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=62.12 E-value=23 Score=42.03 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=76.5
Q ss_pred EeeEEEEEeecCCC--CC---HhhHHHHHHHHHHcCCCEEEE---------------eccCCCCCCCCCceeecchhhHH
Q 006713 7 EPFRIIGGDLHYFR--IL---PQHWEDRLLRAKALGLNTIQT---------------YVPWNLHEPKPGKLVFSGIADLV 66 (634)
Q Consensus 7 ~~~~~~~g~~hy~r--~p---~~~W~~~l~~~k~~G~N~V~~---------------yv~W~~hEp~~G~~df~~~~dl~ 66 (634)
.+.+++...+-|-. -| .+.-...|+.+|++|+|||-. |+|| -|= ||+-|. ++
T Consensus 312 ~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~-----f~ 383 (671)
T PRK14582 312 SPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADL-----FN 383 (671)
T ss_pred CCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCC-----cC
Confidence 34555555444433 23 466788999999999999964 5567 333 333332 22
Q ss_pred H-HHHHHHHcCceEEecCCCcccc---------eecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccc
Q 006713 67 S-FLKLCQKLDLLVMLRPGPYICA---------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLY 136 (634)
Q Consensus 67 ~-fl~~a~~~gL~VilrpgPyi~a---------Ew~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~ 136 (634)
+ ...++.+.|++|-.+-+||-.. +++..+-|... +|+--.| -.+|..+|++|++.|...|+.+.
T Consensus 384 ~~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~r--l~P~~pe~r~~i~~i~~dla~~~- 457 (671)
T PRK14582 384 RVAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQI---HPEQYRR--LSPFDDRVRAQVGMLYEDLAGHA- 457 (671)
T ss_pred HHHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCcccc---CCCCCcC--CCCCCHHHHHHHHHHHHHHHHhC-
Confidence 2 4456889999999999888542 11111111111 0111112 22466788899999999998763
Q ss_pred cCCCcEEEEccccCc
Q 006713 137 DIGGPIVMVQIENEF 151 (634)
Q Consensus 137 ~~ggpII~~QvENEy 151 (634)
+|=++|.+-+-
T Consensus 458 ----~~dGilf~Dd~ 468 (671)
T PRK14582 458 ----AFDGILFHDDA 468 (671)
T ss_pred ----CCceEEecccc
Confidence 67677766654
No 124
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=61.42 E-value=18 Score=38.80 Aligned_cols=67 Identities=6% Similarity=0.008 Sum_probs=50.6
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecch--hhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
..++.++.++++++.+|.+=.+.+-+.... .-+.|+|+-. -|..++++..++.|++|++..=|+|..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 467789999999999998655554433332 2456666542 489999999999999999988888863
No 125
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=61.41 E-value=36 Score=35.08 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=59.6
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCC--CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPK--PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~--~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
.-.|+++|.-+|++||+.|++- .-|.- --..||+. .-.-.+.+.+.+.|+.+ |-+|=- +
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmS----vDEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmClS-------a-- 77 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMS----VDESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMCLS-------A-- 77 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEe----ccchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchhhh-------h--
Confidence 4579999999999999999994 44542 34566664 23566778888899532 334410 0
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhccc
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPL 134 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~ 134 (634)
+|++| +-+.|+.-++.....+.+-+..-.++
T Consensus 78 HRRfP---fGS~D~~~r~~aleiM~KaI~LA~dL 108 (287)
T COG3623 78 HRRFP---FGSKDEATRQQALEIMEKAIQLAQDL 108 (287)
T ss_pred hccCC---CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23344 56889998888887666655555444
No 126
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=60.30 E-value=16 Score=45.67 Aligned_cols=57 Identities=25% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEE-ecc-C-CCCCCC---------------------------CCceeec------chhhHHHHHH
Q 006713 27 EDRLLRAKALGLNTIQT-YVP-W-NLHEPK---------------------------PGKLVFS------GIADLVSFLK 70 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~-yv~-W-~~hEp~---------------------------~G~~df~------~~~dl~~fl~ 70 (634)
.+.|.-+|++|+|+|++ +|+ . ...|.. ++.|--+ ...++.++++
T Consensus 483 ~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~ 562 (1111)
T TIGR02102 483 VEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLIN 562 (1111)
T ss_pred HHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHH
Confidence 45789999999999997 443 1 011110 1222110 1368999999
Q ss_pred HHHHcCceEEecC
Q 006713 71 LCQKLDLLVMLRP 83 (634)
Q Consensus 71 ~a~~~gL~Vilrp 83 (634)
.|+++||.|||..
T Consensus 563 alH~~GI~VILDV 575 (1111)
T TIGR02102 563 EIHKRGMGVILDV 575 (1111)
T ss_pred HHHHCCCEEEEec
Confidence 9999999999984
No 127
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=60.07 E-value=54 Score=36.21 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=71.8
Q ss_pred HHcCCCEEEEecc---------------CCCCC---CCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC
Q 006713 34 KALGLNTIQTYVP---------------WNLHE---PKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG 95 (634)
Q Consensus 34 k~~G~N~V~~yv~---------------W~~hE---p~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg 95 (634)
|-+|||.+|.-|- |-..| +..|.|||+....=..|++.|++.|+..++-. .=-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 4589999997543 32222 56899999977777889999999999877652 113
Q ss_pred CcccccccCC-------CeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC-C------CC-----
Q 006713 96 FPAWLLAKKP-------ALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS-Y------GD----- 156 (634)
Q Consensus 96 ~P~Wl~~~~p-------~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~-~------~~----- 156 (634)
.|.|++...- ...|| +...++-..|+..++++++.. |=+|--+--=||... + ||
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk---~d~y~~FA~YLa~Vv~~~~~~----GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~ 200 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLK---PDNYDAFADYLADVVKHYKKW----GINFDYISPFNEPQWNWAGGSQEGCHFTNE 200 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS----TT-HHHHHHHHHHHHHHHHCT----T--EEEEE--S-TTS-GG--SS-B----HH
T ss_pred CCHHHhcCCCCCCCCccccccC---hhHHHHHHHHHHHHHHHHHhc----CCccceeCCcCCCCCCCCCCCcCCCCCCHH
Confidence 6777776311 01122 344566677777788888432 546666777799853 1 11
Q ss_pred -cHHHHHHHHHHHHHhcCCceEEEEecCCC
Q 006713 157 -DKEYLHHLVTLARAHLGKDIILYTTDGGT 185 (634)
Q Consensus 157 -~~~y~~~l~~~~~~~~G~~vpl~t~dg~~ 185 (634)
....++.|.+.+++ .|+...+..+|...
T Consensus 201 e~a~vI~~L~~~L~~-~GL~t~I~~~Ea~~ 229 (384)
T PF14587_consen 201 EQADVIRALDKALKK-RGLSTKISACEAGD 229 (384)
T ss_dssp HHHHHHHHHHHHHHH-HT-S-EEEEEEESS
T ss_pred HHHHHHHHHHHHHHh-cCCCceEEecchhh
Confidence 35678888888888 69887776666543
No 128
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=59.50 E-value=30 Score=44.00 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=58.2
Q ss_pred CHhhHHHHHHHHHHcCCCEEEE-ecc-CCC-CCC--CCCcee----e----cchhhHHHHHHHHHHc-CceEEecCCCcc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQT-YVP-WNL-HEP--KPGKLV----F----SGIADLVSFLKLCQKL-DLLVMLRPGPYI 87 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~-yv~-W~~-hEp--~~G~~d----f----~~~~dl~~fl~~a~~~-gL~VilrpgPyi 87 (634)
+-+.|++.|+.+|++|.|+|.. +|+ =.. ..| ....+. | .+..|+.++++.|++. ||++|+.. +
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv---V 206 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI---V 206 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe---e
Confidence 4588999999999999999986 444 110 000 112221 3 2567899999999985 99999982 1
Q ss_pred cceecCCC-CcccccccCCCeeeccCCHHHHHHH
Q 006713 88 CAEWDLGG-FPAWLLAKKPALKLRSSDRAYLQLV 120 (634)
Q Consensus 88 ~aEw~~Gg-~P~Wl~~~~p~~~~R~~~~~y~~~~ 120 (634)
|.-=+ -=.||.+ +|+.-....+.+||+.+
T Consensus 207 ---~NHTa~ds~Wl~e-HPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 207 ---FNHTANNSPWLLE-HPEAAYNCITSPHLRPA 236 (1464)
T ss_pred ---ecccccCCHHHHh-ChHhhcCCCCCchhhhH
Confidence 11112 2347776 78755554455555443
No 129
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=58.76 E-value=1.4e+02 Score=31.65 Aligned_cols=68 Identities=18% Similarity=0.158 Sum_probs=43.0
Q ss_pred EEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEE-eccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006713 10 RIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQT-YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (634)
Q Consensus 10 ~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~-yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPy 86 (634)
++++...-..|.+...-++.-+..++.||--|.+ ...+..+.-. ..+..+.+.|+++|+-|++..|+.
T Consensus 99 rf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~---------~~~~pi~~~a~~~gvpv~ihtG~~ 167 (293)
T COG2159 99 RFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDD---------PRLYPIYEAAEELGVPVVIHTGAG 167 (293)
T ss_pred ceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCC---------hHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3444444445655334445555666689988887 3333333221 127899999999999999987764
No 130
>PRK03705 glycogen debranching enzyme; Provisional
Probab=58.52 E-value=16 Score=43.26 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCEEEE-eccCCCCCCCC---C-----cee----------ecc-----hhhHHHHHHHHHHcCceEEec
Q 006713 29 RLLRAKALGLNTIQT-YVPWNLHEPKP---G-----KLV----------FSG-----IADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~-yv~W~~hEp~~---G-----~~d----------f~~-----~~dl~~fl~~a~~~gL~Vilr 82 (634)
.|.-+|++|+|+|.+ +|+=...++.. | -|+ |.. ..++.++++.|+++||+|||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 488999999999997 44321111110 1 011 211 247999999999999999998
No 131
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.31 E-value=23 Score=37.87 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=48.4
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCC-----CCCceeecch--hhHHHHHHHHHHcCceEEecCCCccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-----KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-----~~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
..++.++.++++|+.||.+=.+.+-+..+.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4677899999999999886555554333332 2345555432 38999999999999999998666664
No 132
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=56.76 E-value=48 Score=35.90 Aligned_cols=131 Identities=19% Similarity=0.283 Sum_probs=72.9
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEE------------------------------eccCCCCCCCCCceeecc---------
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQT------------------------------YVPWNLHEPKPGKLVFSG--------- 61 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~------------------------------yv~W~~hEp~~G~~df~~--------- 61 (634)
+.=++||+.|+-|.-.|+|++-. |.+|..+.--.| |.|
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~g---wgGPLp~~w~~~ 92 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQG---WGGPLPQSWIDQ 92 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--S---TT----TTHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCccc---CCCCCCHHHHHH
Confidence 45689999999999999998763 334655544333 222
Q ss_pred hhhH-HHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeee---------------ccCCHHHHHHHHHHHH
Q 006713 62 IADL-VSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL---------------RSSDRAYLQLVERWWG 125 (634)
Q Consensus 62 ~~dl-~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~---------------R~~~~~y~~~~~~~~~ 125 (634)
..+| .++++-.++.||..||-- + .|-.|.=+.+++|+.++ ...||.|.+-.+.|++
T Consensus 93 q~~Lq~kIl~RmreLGm~PVLPa----F----~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~ 164 (333)
T PF05089_consen 93 QAELQKKILDRMRELGMTPVLPA----F----AGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYE 164 (333)
T ss_dssp HHHHHHHHHHHHHHHT-EEEEE----------S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCC----c----CCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHH
Confidence 1233 456778889999987761 1 23357767776776543 3579999999999998
Q ss_pred HHHHHhccccccCCCcEEEEccccCcCCCCCcHHHHHHHHHHH
Q 006713 126 VLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLA 168 (634)
Q Consensus 126 ~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~ 168 (634)
+..+.+-. -.+-....=||-+.-+.+.+|+..+.+..
T Consensus 165 ~q~~~yG~------~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v 201 (333)
T PF05089_consen 165 EQIKLYGT------DHIYAADPFNEGGPPSGDPEYLANVSKAV 201 (333)
T ss_dssp HHHHHH---------SEEE--TTTTS---TTS---HHHHHHHH
T ss_pred HHHHhcCC------CceeCCCccCCCCCCCCchHHHHHHHHHH
Confidence 88888752 25667778899887666666776555543
No 133
>PLN02877 alpha-amylase/limit dextrinase
Probab=56.10 E-value=21 Score=43.97 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHcCceEEec
Q 006713 63 ADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 63 ~dl~~fl~~a~~~gL~Vilr 82 (634)
.++.++++.|+++||.|||.
T Consensus 466 ~efk~mV~~lH~~GI~VImD 485 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLD 485 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 46999999999999999998
No 134
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.93 E-value=20 Score=36.89 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCC-CCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNL-HEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~-hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
+.+++.++.++++|..+|.+...... .+..+-.+... ...+.++.++|+++|+.+.+.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 35667788999999999977322111 01111112111 1368999999999999999986
No 135
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=55.50 E-value=30 Score=37.57 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=64.7
Q ss_pred EEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHH
Q 006713 40 TIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQL 119 (634)
Q Consensus 40 ~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~ 119 (634)
.|.+.|.|+.+--+ - ==...++.|+++|++|+-- |.=||. +-..|+... ++. ++ +.
T Consensus 32 yvD~fvywsh~~~~------i---Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~l-----L~~-~~---~~ 87 (339)
T cd06547 32 YVDTFVYFSHSAVT------I---PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLEDF-----LKK-DE---DG 87 (339)
T ss_pred hhheeecccCcccc------C---CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHHH-----hcc-Cc---cc
Confidence 47778888875432 0 0146789999999999875 455665 445566541 222 11 11
Q ss_pred HHHHHHHHHHHhccccccCCCcEEEEccccCcCCCC---CcHHHHHHHHHHHHHh-cCCceEEEEe
Q 006713 120 VERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG---DDKEYLHHLVTLARAH-LGKDIILYTT 181 (634)
Q Consensus 120 ~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~---~~~~y~~~l~~~~~~~-~G~~vpl~t~ 181 (634)
..++.++|+...+.+-+ .| +.+-+||..+.-. .-.+|++.|++.+++. -+..|..|.+
T Consensus 88 ~~~~a~kLv~lak~yGf--DG--w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs 149 (339)
T cd06547 88 SFPVADKLVEVAKYYGF--DG--WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDS 149 (339)
T ss_pred chHHHHHHHHHHHHhCC--Cc--eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 23555567777665533 23 5667777763111 2234666666666552 2455666755
No 136
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=54.22 E-value=28 Score=37.07 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=73.0
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecc-------------hhhHHHHHHHHHHcCceEEecC
Q 006713 17 HYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG-------------IADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 17 hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~-------------~~dl~~fl~~a~~~gL~Vilrp 83 (634)
|--|. +..-.++++.+|..|+|++-+-+-= .-|...|.- ..|+..||+.|++.||++|.|.
T Consensus 71 h~v~~-kk~~de~fk~ikdn~~Na~ViD~Kd-----d~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 71 HSVAL-KKRLDELFKLIKDNNINAFVIDVKD-----DYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred hhhcC-hhHHHHHHHHHHhCCCCEEEEEecC-----CCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 33343 4556789999999999998874431 222222221 2589999999999999999993
Q ss_pred CCcccceecCCCCcccccccCC-CeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCC-CcHHHH
Q 006713 84 GPYICAEWDLGGFPAWLLAKKP-ALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYL 161 (634)
Q Consensus 84 gPyi~aEw~~Gg~P~Wl~~~~p-~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~-~~~~y~ 161 (634)
= -...- -|.+..| .+.+-....++ +. ++||+=+--.|.|.=...|. +--+|-
T Consensus 145 V-----vFKD~----~l~~~n~fk~av~~~gKpw----~~-------------~~ngaLrKe~~~ehWVd~y~~~~WeYN 198 (400)
T COG1306 145 V-----VFKDT----ILAKENPFKIAVYKDGKPW----KA-------------FTNGALRKESDGEHWVDAYDKNLWEYN 198 (400)
T ss_pred E-----Eeeee----eEEeecCceEEEEcCCCcc----hh-------------hhcccccccccceeeecccchhhhhhh
Confidence 1 11000 1111011 01111111111 11 12333333345555555555 556788
Q ss_pred HHHHHHHHHhcCCceEEE
Q 006713 162 HHLVTLARAHLGKDIILY 179 (634)
Q Consensus 162 ~~l~~~~~~~~G~~vpl~ 179 (634)
-.+++-+.+ .|.|..-|
T Consensus 199 vtIAKEa~~-fGfdEiQF 215 (400)
T COG1306 199 VTIAKEAAK-FGFDEIQF 215 (400)
T ss_pred HHHHHHHHH-cCccceee
Confidence 888888887 79887654
No 137
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.08 E-value=39 Score=27.08 Aligned_cols=46 Identities=30% Similarity=0.367 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
...++.++++|+.|++.|-+ .-|. ++.+ ..++.+++++.||.||..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~i----TDh~------~~~~---~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAI----TDHG------NLFG---AVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEE----eeCC------cccC---HHHHHHHHHHcCCeEEEE
Confidence 34678899999999999987 2332 3444 678899999999988764
No 138
>PLN02784 alpha-amylase
Probab=53.98 E-value=32 Score=41.69 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCC---CCCc-ee----ecchhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEP---KPGK-LV----FSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp---~~G~-~d----f~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.+.|.-++++|+++|-+.=+.....+ .+.. |+ |.-..||..+++.|+++||+||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 67788899999999998533222211 1111 11 3334699999999999999999983
No 139
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=53.45 E-value=4 Score=41.64 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
-...+.+.++|.+.|.+.++|....+..-.+.. .++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~---~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVI---EEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHH---HHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHH---HHHHHHHHHHhcCCcEEEEE
Confidence 456889999999999999999765544322222 45999999999999999999
No 140
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=53.28 E-value=1.7e+02 Score=29.98 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=48.2
Q ss_pred eeEEEEEeecCC---CCCHhhHHHHHHHHHHcCCCEEEEecc--CCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 8 PFRIIGGDLHYF---RILPQHWEDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 8 ~~~~~~g~~hy~---r~p~~~W~~~l~~~k~~G~N~V~~yv~--W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
-+.+..++.|.. +++++..++.-+.+++.|+. |.+.-+ -|+..|.|....-+- ..+.+.+++|++.|..+|.
T Consensus 26 ~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~~-~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 26 SFQLFLGNPRSWKGVRLSEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKSI-ERLIDEIKRCEELGIKALV 102 (273)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHHH-HHHHHHHHHHHHcCCCEEE
Confidence 345566666654 57788888888889999997 444322 355555554444331 3488899999999997444
No 141
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=53.00 E-value=34 Score=37.05 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=55.3
Q ss_pred ecCCCC---CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecch--hhHHHHHHHHHHcCceEEecCCCccc
Q 006713 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 16 ~hy~r~---p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
+|..|+ ..++.++.++++++.+|-+=.+++-|..+. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 454553 477889999999999998766666666554 3466776543 48899999999999999998878887
No 142
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=51.29 E-value=43 Score=28.58 Aligned_cols=68 Identities=18% Similarity=0.023 Sum_probs=40.5
Q ss_pred ccceEEEEEeecCCCCCcceeecccccEEEEEECCCCCCCCCCCeEEEEeeecccceeEecccccCCccEEEEEEEecCc
Q 006713 383 MFGFLLYVSEFGGKDYGSSLLISKVHDRAQVFISCPTEDNSGRPTYVGTIERWSNRALSLPNFRCGSNISLFVLVENMGR 462 (634)
Q Consensus 383 ~~GyvlYrt~~~~~~~~~~L~i~~~~D~a~Vfvng~~~~~~~~~~~~G~~~~~~~~~~~~p~~~~~~~~~L~ILven~Gr 462 (634)
..|-+++...-........|++.+.....+-|||| +++|..... ..+.++.. ..+.++|++ ++..||
T Consensus 17 ~~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg---------~~~g~~~~~--~~~~~~~~-~~G~h~l~v-vD~~G~ 83 (89)
T PF06832_consen 17 PDGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDG---------EPLGTTQPG--HQLFWQPD-RPGEHTLTV-VDAQGR 83 (89)
T ss_pred CCCCEEEeCCCCCccceEEEEEeCCCCcEEEEECC---------EEcccCCCC--CeEEeCCC-CCeeEEEEE-EcCCCC
Confidence 34555555421112234455555556688999999 898775432 33444321 246788877 888887
Q ss_pred c
Q 006713 463 V 463 (634)
Q Consensus 463 ~ 463 (634)
.
T Consensus 84 ~ 84 (89)
T PF06832_consen 84 S 84 (89)
T ss_pred E
Confidence 5
No 143
>PRK09267 flavodoxin FldA; Validated
Probab=50.98 E-value=99 Score=29.46 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=47.4
Q ss_pred CEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 6 G~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.-..++++...|....++..|.+-+++++...++-..+.++ .......-.-.|. .-+..+-+++++.|..++-.
T Consensus 46 ~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~vg~ 119 (169)
T PRK09267 46 AYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFC--DAMGTLYDIVEPRGATIVGH 119 (169)
T ss_pred hCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHH--HHHHHHHHHHHHCCCEEECc
Confidence 34568898889877777889999999888777776666666 2221111111122 12567777788889665443
No 144
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=50.54 E-value=13 Score=36.31 Aligned_cols=47 Identities=28% Similarity=0.368 Sum_probs=24.4
Q ss_pred CCeEEEEEECCcccccccC-CCC-------------Ccc--eeecCcccccccccEEEEEEecC
Q 006713 560 GWGKGIAFVNEFNLGRFWP-SFG-------------PQC--DLYVPAPILRHGENLVVIFELES 607 (634)
Q Consensus 560 g~~KG~v~VNG~nlGRYW~-~iG-------------PQ~--tlYVP~~~Lk~G~N~IivfE~e~ 607 (634)
.-++=.|.||| ..+..+. ..| -.+ ++-||+..|++|.|+|.+=-..+
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 45777999999 6666652 232 111 23399999999999987644444
No 145
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=50.52 E-value=3e+02 Score=29.79 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=79.5
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHH---HcCceEEecCCCcccceecCCCC-c
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQ---KLDLLVMLRPGPYICAEWDLGGF-P 97 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~---~~gL~VilrpgPyi~aEw~~Gg~-P 97 (634)
.++..+.-++.+|+.|++.--.|-.|.- |.+=|++-++..- +.+|..-|. |.+.-. =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~-----------gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWFN-----------GKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeecC-----------CchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 3778899999999999999999888862 2222555554442 445555555 333211 1
Q ss_pred ccccccCCCeeeccCCHHHH--HHHHHHHHHHHHHhcc--ccccCCCcEEEEccccCcCCCCCcHHHHHHHHHHHHHhcC
Q 006713 98 AWLLAKKPALKLRSSDRAYL--QLVERWWGVLLPKIAP--LLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLG 173 (634)
Q Consensus 98 ~Wl~~~~p~~~~R~~~~~y~--~~~~~~~~~l~~~l~~--~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~~G 173 (634)
.|-.. ..++.+. ..|. +..++.++.|++.++. +.--+|-||+++=--.+ ..+-++.++.+++.+++ +|
T Consensus 117 ~w~g~-~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~---~pd~~~~~~~wr~~a~~-~G 188 (345)
T PF14307_consen 117 RWDGR-NNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGD---IPDIKEMIERWREEAKE-AG 188 (345)
T ss_pred ccCCC-Ccccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECccc---ccCHHHHHHHHHHHHHH-cC
Confidence 12222 1122221 1121 2235666778877764 33347899988743322 23567899999999999 78
Q ss_pred CceEEEEec
Q 006713 174 KDIILYTTD 182 (634)
Q Consensus 174 ~~vpl~t~d 182 (634)
+..+.+..+
T Consensus 189 ~~giyii~~ 197 (345)
T PF14307_consen 189 LPGIYIIAV 197 (345)
T ss_pred CCceEEEEE
Confidence 886655443
No 146
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=50.47 E-value=34 Score=36.94 Aligned_cols=66 Identities=8% Similarity=0.032 Sum_probs=48.4
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecc--hhhHHHHHHHHHHcCceEEecCCCccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~--~~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
..+..++.++++++.||.+=.+.+-+.... .-+.|+|+- .-|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 467779999999999998655554444332 234465553 248899999999999999988767765
No 147
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=49.82 E-value=3.4e+02 Score=29.33 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhccccccCCCcEEEEccccCcCC
Q 006713 121 ERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS 153 (634)
Q Consensus 121 ~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~ 153 (634)
++|++..+..+... ..+.++|.+--.||.+.
T Consensus 297 ~~~l~~a~~~~~~~--~~~~~~vfInAWNEW~E 327 (345)
T PF14307_consen 297 KKWLREAIRRVKEN--PGDERIVFINAWNEWAE 327 (345)
T ss_pred HHHHHHHHHHHHhC--CCCCCEEEEEeccccCC
Confidence 45555566666544 24679999999999964
No 148
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=49.52 E-value=43 Score=39.44 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=47.6
Q ss_pred HHHHHcCCCEEEE---ecc---CC--CCCCCCCceeec---------chhhHHHHHHHHHHcCceEEecCC--------C
Q 006713 31 LRAKALGLNTIQT---YVP---WN--LHEPKPGKLVFS---------GIADLVSFLKLCQKLDLLVMLRPG--------P 85 (634)
Q Consensus 31 ~~~k~~G~N~V~~---yv~---W~--~hEp~~G~~df~---------~~~dl~~fl~~a~~~gL~Vilrpg--------P 85 (634)
+-++++|+++|-+ |.. |. .---..|-||-+ -.-|++++++.|+++||+||+..- |
T Consensus 81 dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd 160 (688)
T TIGR02455 81 KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD 160 (688)
T ss_pred HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc
Confidence 4889999999987 333 43 222235667633 346999999999999999998732 2
Q ss_pred cccceecCCCCcccc
Q 006713 86 YICAEWDLGGFPAWL 100 (634)
Q Consensus 86 yi~aEw~~Gg~P~Wl 100 (634)
+.-|+...+-+|.|.
T Consensus 161 F~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 161 FRLAELAHGDYPGLY 175 (688)
T ss_pred hHHHhhcCCCCCCce
Confidence 555555555555554
No 149
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=49.10 E-value=28 Score=38.90 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEE-ecc---CCCCCCCCCce-----eecchhhHHHHHHHHHHcCceEEec
Q 006713 27 EDRLLRAKALGLNTIQT-YVP---WNLHEPKPGKL-----VFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~-yv~---W~~hEp~~G~~-----df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.+.|.-+|.+|+++|-+ +++ -..|---.-.| .|....|+.++++.|+++||+||+.
T Consensus 32 ~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 32 TEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 37889999999999966 232 11222111111 5777789999999999999999998
No 150
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=48.52 E-value=1.1e+02 Score=31.94 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCccc---------------------
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYIC--------------------- 88 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~--------------------- 88 (634)
..++|++|++.|-+ + |..++-.|.=+ +..+.+=++.|.++||.+|++.|=-.-
T Consensus 79 ~~mLkd~G~~~vii----G-HSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~ 152 (250)
T PRK00042 79 AEMLKDLGVKYVII----G-HSERRQYFGET-DELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAG 152 (250)
T ss_pred HHHHHHCCCCEEEe----C-cccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHcc
Confidence 56899999999999 3 44444444322 223444444599999999999763210
Q ss_pred ---ceec---CCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHh
Q 006713 89 ---AEWD---LGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKI 131 (634)
Q Consensus 89 ---aEw~---~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l 131 (634)
++|. -+.=|.|.--. =++.+|...+.+.++++..+..+
T Consensus 153 ~~~~~~~~~vIAYEPvWAIGt-----G~~as~~~~~~v~~~Ir~~l~~~ 196 (250)
T PRK00042 153 LSAEQFANLVIAYEPVWAIGT-----GKTATPEQAQEVHAFIRAVLAEL 196 (250)
T ss_pred CCHHHhCCEEEEECCHHHhCC-----CCCCCHHHHHHHHHHHHHHHHHh
Confidence 0011 01126666531 14568899999999988887754
No 151
>PLN03059 beta-galactosidase; Provisional
Probab=47.47 E-value=52 Score=39.88 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCceEEEEEEEeCCCCCC----CceEEeeCCC-eEEEEEECCcccccccC-CCCCcceeecCcccccccccEEEEEEe
Q 006713 534 KEPAFYVGRFSIDKVNQV----KDTYLSFSGW-GKGIAFVNEFNLGRFWP-SFGPQCDLYVPAPILRHGENLVVIFEL 605 (634)
Q Consensus 534 ~~p~fy~~~f~l~~~~~~----~Dt~Ld~~g~-~KG~v~VNG~nlGRYW~-~iGPQ~tlYVP~~~Lk~G~N~IivfE~ 605 (634)
.+-.||+++|+++..+.. .+..|.+.+. -+..|||||.-+|.-.- ..+++.+|--|-. |+.|.|+|-||-+
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~-l~~g~n~L~iLse 545 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVK-LTVGINKISLLSV 545 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccc-cCCCceEEEEEEE
Confidence 467999999998764311 1234766554 67899999999998652 3455555433332 6789999977654
No 152
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=47.07 E-value=46 Score=37.62 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=46.2
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 16 ~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
..|-+.|.+.-+++++++.++|+..|+++++-|.. .++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 34667788888999999999999999998876654 25899999999999988766
No 153
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.61 E-value=2.9e+02 Score=29.60 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=46.8
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEec----cCCCCC---C---CCCcee-ecchhhHHHHHHHHHHcCceEEec
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYV----PWNLHE---P---KPGKLV-FSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv----~W~~hE---p---~~G~~d-f~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
+|.+...+.|+.|...++|+...++ .|.+-- | +.|.+. |=-..|+.++++.|+++|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEe
Confidence 6789999999999999999999987 475422 1 123211 111247999999999999999987
No 154
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=45.18 E-value=14 Score=34.61 Aligned_cols=29 Identities=28% Similarity=0.654 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHcCceEEecCCCccccee
Q 006713 62 IADLVSFLKLCQKLDLLVMLRPGPYICAEW 91 (634)
Q Consensus 62 ~~dl~~fl~~a~~~gL~VilrpgPyi~aEw 91 (634)
-.||.-+|+.|++.|+.|++-.-| +++.|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 368999999999999998887655 55554
No 155
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=45.05 E-value=37 Score=37.81 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=46.2
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecch--hhHHHHHHHHHHcCceEEecCCCcccce
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYICAE 90 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgPyi~aE 90 (634)
..+...+.++.+++.|+-.=.+.+-..... ..+.|.|+.. -|..++++.+++.|++|++..-|+|+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 367788999999999998766655533333 4445555432 3899999999999999999977777654
No 156
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=44.85 E-value=35 Score=34.97 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
+..++.++.++++|..+|.+...+..-...+.+..-.....|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888999999999999874433211111112111122357888999999999999986
No 157
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=44.58 E-value=3e+02 Score=29.91 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=47.4
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCceeecc---hhhHHHHHHHHHHcCceEEec
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLVFSG---IADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~----W~~hEp------~~G~~df~~---~~dl~~fl~~a~~~gL~Vilr 82 (634)
+|.+...+.|+.|....+|+...++- |.+--+ +.|.|.=++ ..|+..+++.|+++|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 56899999999999999999998864 655332 134332111 247999999999999999987
No 158
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.79 E-value=41 Score=34.69 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec-chhhHHHHHHHHHHcCceEEecC
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~-~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
+.+++.|+.++++|++.|.+.-.-...++.. .=.+. ....+.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4568889999999999998631100011111 00111 12358889999999999999885
No 159
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=43.62 E-value=28 Score=29.85 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=24.5
Q ss_pred cCCCcEEEEccccC-cCCCC----------CcHHHHHHHHHHHHHh--cCCceEEEE
Q 006713 137 DIGGPIVMVQIENE-FGSYG----------DDKEYLHHLVTLARAH--LGKDIILYT 180 (634)
Q Consensus 137 ~~ggpII~~QvENE-yg~~~----------~~~~y~~~l~~~~~~~--~G~~vpl~t 180 (634)
++.+.|.+|+|-|| .+.+. ....+.++|+++++.. ..-+.|+.+
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34568999999999 66321 1345666666665442 455567643
No 160
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=43.42 E-value=56 Score=29.58 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=32.4
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEE
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vi 80 (634)
+|++...+.++.++++|+..|-+.-- ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g----------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPG----------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TT----------------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcc----------------hHHHHHHHHHHHcCCEEE
Confidence 57899999999999999887766221 225899999999999976
No 161
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.21 E-value=1.2e+02 Score=31.78 Aligned_cols=74 Identities=19% Similarity=0.163 Sum_probs=52.8
Q ss_pred eeCCEeeEEEEEeecCCCC-CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec--chhhHHHHHHHHHHcCceE
Q 006713 3 RKDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 3 ~~dG~~~~~~~g~~hy~r~-p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~--~~~dl~~fl~~a~~~gL~V 79 (634)
.+.+.+++++.|= --+ .++.-.+.-+++|++|+..++.|.+=+... -+.|. +..-+..+-+.|++.||.+
T Consensus 22 ~~g~~~~~~iaGP---Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl~~ 94 (266)
T PRK13398 22 VIGGEEKIIIAGP---CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNLPV 94 (266)
T ss_pred EEcCCCEEEEEeC---CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCCCE
Confidence 3444577777772 112 377888899999999999999986643222 22444 3456889999999999998
Q ss_pred EecC
Q 006713 80 MLRP 83 (634)
Q Consensus 80 ilrp 83 (634)
+-.|
T Consensus 95 ~te~ 98 (266)
T PRK13398 95 VTEV 98 (266)
T ss_pred EEee
Confidence 8873
No 162
>PRK08227 autoinducer 2 aldolase; Validated
Probab=42.48 E-value=50 Score=34.68 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
..+.+-++|..+|.+.|+|.. .+.-.-..|+.+..+.|++.||-+|+
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs------~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGS------EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 466788999999999999972 22223456899999999999999886
No 163
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.20 E-value=60 Score=35.18 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=50.0
Q ss_pred ecCCCC---CHhhHHHHHHHHHHcCCCEEEEec----------cCCCCCCC---------CCceeecc---hhhHHHHHH
Q 006713 16 LHYFRI---LPQHWEDRLLRAKALGLNTIQTYV----------PWNLHEPK---------PGKLVFSG---IADLVSFLK 70 (634)
Q Consensus 16 ~hy~r~---p~~~W~~~l~~~k~~G~N~V~~yv----------~W~~hEp~---------~G~~df~~---~~dl~~fl~ 70 (634)
+|..|+ ..++-++.++++++.||.+=-+++ .|+...-. -+.++|.. .-|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455553 367789999999999998766654 24432211 12333431 137999999
Q ss_pred HHHHcCceEEecCCCccc
Q 006713 71 LCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 71 ~a~~~gL~VilrpgPyi~ 88 (634)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998777775
No 164
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=42.02 E-value=49 Score=34.24 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=37.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
..++|++|++.|-+ ++-|.+ --|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR-~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII----GHSERR-QYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe----Cccccc-CcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999999999 444443 334333 45788899999999999999965
No 165
>PRK09875 putative hydrolase; Provisional
Probab=41.94 E-value=1.4e+02 Score=31.82 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=47.7
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLA 102 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~ 102 (634)
.+.-.+.|+.+|++|.+||= |..+ ..-.||...+.+++++-|+.||...|-|.-. -+|.|+..
T Consensus 33 ~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMRETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 45566788999999999872 2221 1224799999999999999999999988543 37888874
No 166
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=41.51 E-value=36 Score=35.60 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=34.8
Q ss_pred CCccceecC------cccceEEEEEeecCCC-------CCcceeecccccEEEEEECC
Q 006713 373 NPLSMESVG------QMFGFLLYVSEFGGKD-------YGSSLLISKVHDRAQVFISC 417 (634)
Q Consensus 373 ~p~~mE~lg------q~~GyvlYrt~~~~~~-------~~~~L~i~~~~D~a~Vfvng 417 (634)
.|-++-+++ +.+|-+||+-++.... +...|++.++|.+|.|||||
T Consensus 70 vpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng 127 (297)
T KOG2024|consen 70 VPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNG 127 (297)
T ss_pred cccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcc
Confidence 444555555 4679999998887652 45678899999999999998
No 167
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=40.75 E-value=68 Score=33.99 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCC--CCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEP--KPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp--~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
++..++.++.+++.|.+.|.+|.-+..--+ .++...++ ...+.+++++|+++|+.|.+.
T Consensus 119 ~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 119 VEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEE
Confidence 788999999999999999999976532211 12211222 124889999999999998887
No 168
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=40.49 E-value=2.2e+02 Score=30.21 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCC-HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcc
Q 006713 20 RIL-PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPA 98 (634)
Q Consensus 20 r~p-~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~ 98 (634)
+++ -+.-+.+|+.++.-+. +||+|- +.-.-|+.++..|.+.|++|+|..
T Consensus 58 tCKSa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi--------------- 107 (305)
T COG5309 58 TCKSADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI--------------- 107 (305)
T ss_pred CCcCHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------
Confidence 344 6778999999998887 999984 111227889999999999999983
Q ss_pred cccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcC--CCC---CcHHHHHHHHHHHHHhcC
Q 006713 99 WLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFG--SYG---DDKEYLHHLVTLARAHLG 173 (634)
Q Consensus 99 Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg--~~~---~~~~y~~~l~~~~~~~~G 173 (634)
|+.. ++ . ..+++ +++..+.+. ..-..|..+=|.||.= ... .-.+|+...|.++++ +|
T Consensus 108 w~td---d~-------~--~~~~~---til~ay~~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~-ag 169 (305)
T COG5309 108 WPTD---DI-------H--DAVEK---TILSAYLPY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKE-AG 169 (305)
T ss_pred eecc---ch-------h--hhHHH---HHHHHHhcc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHh-cC
Confidence 4443 11 1 12222 344444442 2235789999999963 222 235899999999996 89
Q ss_pred CceEEEEecCCC
Q 006713 174 KDIILYTTDGGT 185 (634)
Q Consensus 174 ~~vpl~t~dg~~ 185 (634)
.++|+.|+|.+.
T Consensus 170 y~gpV~T~dsw~ 181 (305)
T COG5309 170 YDGPVTTVDSWN 181 (305)
T ss_pred CCCceeecccce
Confidence 999999999875
No 169
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=39.77 E-value=53 Score=33.16 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=35.7
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
..++|++|++.|-+ ++-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 46899999999998 566665 4333 48999999999999999984
No 170
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=39.60 E-value=38 Score=36.89 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=45.4
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 16 ~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
-++ |.|...-.-..+.++++|.++|.+.|+|.-.++. .-+-.-..++.++.+.|+++||-+++.
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE 162 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLE 162 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 344 6554443334678999999999999999954331 011223456999999999999998886
No 171
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=38.67 E-value=46 Score=39.68 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHcCCCEEEE-eccCCCCCCCC--------------------Cceeecc-----hhhHHHHHHHHHHcCceEEec
Q 006713 30 LLRAKALGLNTIQT-YVPWNLHEPKP--------------------GKLVFSG-----IADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 30 l~~~k~~G~N~V~~-yv~W~~hEp~~--------------------G~~df~~-----~~dl~~fl~~a~~~gL~Vilr 82 (634)
|.-+|++|+++|+. +|+.-..|+.. |.|-=+. .+.+..+++.++++||-|||.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 89999999999997 67654444432 2222222 247899999999999999998
No 172
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=38.25 E-value=46 Score=40.00 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHHHcCCC--EEEEeccCCCCCCCCCceeec--chhhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLN--TIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N--~V~~yv~W~~hEp~~G~~df~--~~~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
-+.-+++.+.+++|||. ++-+-+.|.- .-+.|.++ ...++..|++..++.|+++|+.+-|+|..
T Consensus 310 ls~~~dvv~~~~~agiPld~~~~DiDyMd---~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~ 377 (805)
T KOG1065|consen 310 LSVVRDVVENYRAAGIPLDVIVIDIDYMD---GYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIST 377 (805)
T ss_pred HHHHHHHHHHHHHcCCCcceeeeehhhhh---cccceeeccccCcchHHHHHHHHhCCCeEEEEeCCcccc
Confidence 56668999999999999 4444454431 12233322 23468999999999999999987777753
No 173
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=38.08 E-value=1e+02 Score=36.26 Aligned_cols=110 Identities=13% Similarity=0.028 Sum_probs=73.1
Q ss_pred EeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006713 7 EPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (634)
Q Consensus 7 ~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPy 86 (634)
++-+.+++..|+++-+.+.=-++|++-.++|...+-|-.+++. + .+.+|++.|++.++.||...-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557888988887665555455666667899999999666543 2 27888888887788888876664
Q ss_pred ccc--------eecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhc
Q 006713 87 ICA--------EWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (634)
Q Consensus 87 i~a--------Ew~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (634)
... +|..-=+|.|+.++.... . +....++.--++..+++..|.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~~~--~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMRAV--E-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHHhc--C-CchHHHHHHHHHHHHHHHHHH
Confidence 332 243344788888732111 1 223566677777777777765
No 174
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=37.93 E-value=4.4e+02 Score=29.18 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=59.5
Q ss_pred HhhHHHHHHHHHHc-C-CCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEE-ecCCCcccceecCCCCccc
Q 006713 23 PQHWEDRLLRAKAL-G-LNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM-LRPGPYICAEWDLGGFPAW 99 (634)
Q Consensus 23 ~~~W~~~l~~~k~~-G-~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vi-lrpgPyi~aEw~~Gg~P~W 99 (634)
.++..+++.+++.+ + .-.|...++|... .|+.++.++|+++||.|. +.|+=+- -|.
T Consensus 39 ~~e~~~d~~~v~~L~~~~~~v~lH~~~d~~------------~d~~~~~~~l~~~GL~v~~i~p~~f~--------~~~- 97 (378)
T TIGR02635 39 VFEKIEDAALVHRLTGICPTVALHIPWDRV------------EDYEELARYAEELGLKIGAINPNLFQ--------DDD- 97 (378)
T ss_pred HHHHHHHHHHHHhhcCCCCceeeccCCccc------------cCHHHHHHHHHHcCCceeeeeCCccC--------Ccc-
Confidence 45556666667666 3 3467777777221 357899999999999987 5655110 111
Q ss_pred ccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEE
Q 006713 100 LLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIV 143 (634)
Q Consensus 100 l~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII 143 (634)
++...+-+.||..++..-.+.++.+..-+.+ |.+.|
T Consensus 98 ----~~~GSLt~pD~~vR~~AIe~~k~~idiA~eL----Ga~~I 133 (378)
T TIGR02635 98 ----YKFGSLTHPDKRIRRKAIDHLLECVDIAKKT----GSKDI 133 (378)
T ss_pred ----cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh----CCCeE
Confidence 2223566789998888888887777766654 55544
No 175
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=37.91 E-value=48 Score=33.70 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
+.+++.++.++++|..+|.+...+.--++..-+..-.....+.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 677888999999999999874322110100001001112358888999999999999885
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=37.89 E-value=89 Score=32.74 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=41.4
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.|.+.-++++++..+.|+..|+++++-+. ...+...++.|+++|+.|.+-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 45566788999999999999999887665 235889999999999988764
No 177
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=37.81 E-value=38 Score=37.35 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCCHhhHHHHHHHHHHc-CCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 20 RILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 20 r~p~~~W~~~l~~~k~~-G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
-+|...||-+|.-+.++ -=|||.+-|- |=+.|-=++|+-.= |.+++++|+|+|+-||..
T Consensus 179 lLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~H---L~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 179 LLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSEDH---LKKIAETAKKLGIMVIAD 238 (447)
T ss_pred ccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHHH---HHHHHHHHHHhCCeEEeh
Confidence 48899999999999987 7889988554 77888888888766 999999999999999986
No 178
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=37.80 E-value=1.6e+02 Score=30.70 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=66.3
Q ss_pred eEEEEEeecCCCCC----HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCce--EEec
Q 006713 9 FRIIGGDLHYFRIL----PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL--VMLR 82 (634)
Q Consensus 9 ~~~~~g~~hy~r~p----~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~--Vilr 82 (634)
.+.+++..|+.+-| .+.=.++|++-.++|.+.+-|-.+ ||.+- +.+|++.|++.|+. |++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~~---~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDNDD---YYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHHH---HHHHHHHHHHcCCCCCEecc
Confidence 36788888777544 222235566777899999888443 33333 88999999999765 5555
Q ss_pred CCCccc-------ceecCCCCcccccccCCCeeeccCC-HHHHHHHHHHHHHHHHHhcc
Q 006713 83 PGPYIC-------AEWDLGGFPAWLLAKKPALKLRSSD-RAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 83 pgPyi~-------aEw~~Gg~P~Wl~~~~p~~~~R~~~-~~y~~~~~~~~~~l~~~l~~ 133 (634)
.-|-.. ..|..-.+|.|+.++... . .++ ...+++--++..+++..+.+
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~-~~~~~~~~~~gi~~~~~~~~~l~~ 247 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--Y-DDDPEEVRAVGIEYATDQCEDLIA 247 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444322 335555789999873211 1 233 34555566666666666644
No 179
>PF13987 YedD: YedD-like protein
Probab=37.46 E-value=28 Score=31.08 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=21.0
Q ss_pred cEEEEEEecCCC---CccEEEEeeccccccCcc
Q 006713 598 NLVVIFELESPN---SELVIHSVNQPDFTCGSI 627 (634)
Q Consensus 598 N~IivfE~e~~~---~~~~v~~~~~~~~~~~~~ 627 (634)
++|.-+|+++.. ...+++-+++|...|.+.
T Consensus 70 ~~vy~le~~g~~l~YdgmtL~rV~rpT~eC~~~ 102 (111)
T PF13987_consen 70 LDVYPLERDGNTLEYDGMTLQRVDRPTAECQQA 102 (111)
T ss_pred cEEEEEEecCCEEEecceEEEeccCCcHHHHHH
Confidence 566667776632 135788899999999764
No 180
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=37.10 E-value=69 Score=35.89 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=53.2
Q ss_pred CHhhHHHHHHHHHHcCCCEEEE-eccCCCC--CC--CCCceeec----------chhhHHHHHHHHH-HcCceEEecCCC
Q 006713 22 LPQHWEDRLLRAKALGLNTIQT-YVPWNLH--EP--KPGKLVFS----------GIADLVSFLKLCQ-KLDLLVMLRPGP 85 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~-yv~W~~h--Ep--~~G~~df~----------~~~dl~~fl~~a~-~~gL~VilrpgP 85 (634)
|-+.|++.|+.++++|+|+|.. ++----. .| -..+..|+ ...|+.++++.++ ++||.++...
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 4579999999999999999985 2221100 00 01111111 1247999999985 7999876652
Q ss_pred cccceecCC-CCcccccccCCCeeeccCCHHHHHH
Q 006713 86 YICAEWDLG-GFPAWLLAKKPALKLRSSDRAYLQL 119 (634)
Q Consensus 86 yi~aEw~~G-g~P~Wl~~~~p~~~~R~~~~~y~~~ 119 (634)
+ |.-- -==.||.. +|+.-.--.+.++|+.
T Consensus 98 -V---~NHtA~nS~Wl~e-HPEagYN~~nsPHL~p 127 (423)
T PF14701_consen 98 -V---LNHTANNSPWLRE-HPEAGYNLENSPHLRP 127 (423)
T ss_pred -e---eccCcCCChHHHh-CcccccCCCCCcchhh
Confidence 1 2111 12358887 8876443334444433
No 181
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=36.90 E-value=1.1e+02 Score=32.69 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=49.1
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEecc-CCC-CCCCCCc---eeecch----hhHHHHHHHHHHcCceEEecCCCccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVP-WNL-HEPKPGK---LVFSGI----ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~-W~~-hEp~~G~---~df~~~----~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
+.++-++.++++++.||-+=.+++- |.. ++..-|. .+|+.+ -|..++++..++.|++|++..=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 7788899999999999987666654 632 2332332 244432 38999999999999999998666664
No 182
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=35.40 E-value=53 Score=34.27 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCC---CCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNL---HEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~---hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
++.+++||++|++.|.+.+- .. ++.--+..+|+. ..+.++.|+++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~---~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDD---RVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHH---HHHHHHHHHHcCCEEEEe
Confidence 67788999999999888654 21 111112223333 567788999999986543
No 183
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=34.81 E-value=33 Score=36.75 Aligned_cols=88 Identities=18% Similarity=0.452 Sum_probs=51.8
Q ss_pred EEEEEeec------CCCCCHhhHHHHHHHHHHc-CCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 10 RIIGGDLH------YFRILPQHWEDRLLRAKAL-GLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 10 ~~~~g~~h------y~r~p~~~W~~~l~~~k~~-G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
+..||. | +.+++.+-+++-.++-..+ |+|.++-| |..-++.. + ...++|++|+|+|-+.|--
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~-----~---~~A~lLkl~akYGGy~iWs 172 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS-----E---HFADLLKLCAKYGGYFIWS 172 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH-----H---HHHHHHHHHHHTT-EEEEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh-----H---HHHHHHHHHHHhCceEEee
Confidence 456777 7 4457777788888888776 99988875 44444432 3 4899999999999887322
Q ss_pred CCCcccceecCC-CCcccccccCCCeeeccCCHHHHHHHHHH
Q 006713 83 PGPYICAEWDLG-GFPAWLLAKKPALKLRSSDRAYLQLVERW 123 (634)
Q Consensus 83 pgPyi~aEw~~G-g~P~Wl~~~~p~~~~R~~~~~y~~~~~~~ 123 (634)
+-.++ .+-.|+-. ..++.|++++++|
T Consensus 173 -------~~~N~~am~k~~~~--------~~~~~~~~A~~~y 199 (324)
T PF08306_consen 173 -------DQNNPIAMEKWFGE--------QRNPEFKDACEKY 199 (324)
T ss_dssp ----------GGGHHHHHCCC--------CCSHHHHHHHHHH
T ss_pred -------cCCChHHHHHhhhh--------ccCHHHHHHHHHh
Confidence 11122 23345433 1688888888873
No 184
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=34.45 E-value=79 Score=37.08 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=45.5
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 16 ~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
+-|.|.|.+.-+..++++++.|+.+|+++.+.|.. .++...++.|+++|+.+-.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 44667888888999999999999999998776653 4689999999999998644
No 185
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=34.42 E-value=72 Score=34.11 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=43.4
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEecc----CCCCCC------CCCcee------ecchhhHHHHHHHHHHcCceEEec
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHEP------KPGKLV------FSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~----W~~hEp------~~G~~d------f~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.|.+..++.|+.|...++|++..++. |.+.-+ +.|.+. +=-..|+.++++.|+++|+.||..
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 46789999999999999999999875 443221 233222 111257999999999999999987
No 186
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.31 E-value=72 Score=33.01 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec-chhhHHHHHHHHHHcCceEEecC
Q 006713 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~-~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.+++.++.++++|+++|.+.-.....++. ..-.+. ....+.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 46788999999999999763210000000 000111 12357889999999999999983
No 187
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.03 E-value=76 Score=24.55 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=39.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceE
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~V 79 (634)
+..-.+.+.-+.+.|+|.+.++. +...+.....+.|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 45567788899999999998875 3333234455555533 3889999999999765
No 188
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=33.49 E-value=7.3e+02 Score=27.86 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCEEEEecc----CCCCCCCCCceeecchhhHHHHHHHHHHcCceE--EecCCCcccceecCCCCcccc
Q 006713 27 EDRLLRAKALGLNTIQTYVP----WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~----W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~V--ilrpgPyi~aEw~~Gg~P~Wl 100 (634)
...++.+.+.|+|++++++- |..-... ..++.+|.+.|+++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~--------~~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLS--------DETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCC--------HHHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 34678899999999999864 6544433 346899999999998852 33345552
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQI 147 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Qv 147 (634)
+-+-+.|+.-++...+.|.+-+.+-+.+ |-+.+-+.-
T Consensus 203 ------INLASpd~e~rekSv~~~~~eL~rA~~L----Ga~~VV~HP 239 (413)
T PTZ00372 203 ------INLANPDKEKREKSYDAFLDDLQRCEQL----GIKLYNFHP 239 (413)
T ss_pred ------ecCCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEECC
Confidence 1223456666666666666666666554 445555553
No 189
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.31 E-value=88 Score=30.77 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=54.6
Q ss_pred EEeecCCCC-----CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCcee--ecch-hhHHHHHHHHHHcCceEEecCC
Q 006713 13 GGDLHYFRI-----LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLV--FSGI-ADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 13 ~g~~hy~r~-----p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~d--f~~~-~dl~~fl~~a~~~gL~Vilrpg 84 (634)
-|.+||+|. +.++.+.-++.++..+... ...|--.|..++.+. .+.. ..+.+|++..+++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 388998853 4778888899998865542 111223343334332 1111 2478999999999999999888
Q ss_pred Cccc----ceec---CCCCcccccc
Q 006713 85 PYIC----AEWD---LGGFPAWLLA 102 (634)
Q Consensus 85 Pyi~----aEw~---~Gg~P~Wl~~ 102 (634)
++.. +... ....|.|+..
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~ 156 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAH 156 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecC
Confidence 7532 1111 3567889886
No 190
>PRK10658 putative alpha-glucosidase; Provisional
Probab=32.95 E-value=1.2e+02 Score=36.02 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=46.9
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEe--ccCCCCCC-CCCceeecch--hhHHHHHHHHHHcCceEEecCCCccc
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTY--VPWNLHEP-KPGKLVFSGI--ADLVSFLKLCQKLDLLVMLRPGPYIC 88 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~y--v~W~~hEp-~~G~~df~~~--~dl~~fl~~a~~~gL~VilrpgPyi~ 88 (634)
.+.+...+.++++|+.||-+=.+. ++|. .. .-+.|.|+-. -|..++++..++.|++|++..=|||.
T Consensus 280 ~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 280 YDEATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 345667888999999998754444 4553 22 1234555422 38899999999999999999877774
No 191
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.56 E-value=2.5e+02 Score=32.17 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=93.1
Q ss_pred CCCHhhHHHHHHHHHHcCCCEEEEe----ccCC-------CCCCCCCceeecch--------------------------
Q 006713 20 RILPQHWEDRLLRAKALGLNTIQTY----VPWN-------LHEPKPGKLVFSGI-------------------------- 62 (634)
Q Consensus 20 r~p~~~W~~~l~~~k~~G~N~V~~y----v~W~-------~hEp~~G~~df~~~-------------------------- 62 (634)
-|.-+.||+.|+-|.-.|||.+-.. ..|- +...+=.+| |+|.
T Consensus 74 WW~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldey-ftgpAflAW~RMGNl~awgGpLs~aw~~~q 152 (666)
T KOG2233|consen 74 WWGWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEY-FTGPAFLAWHRMGNLHAWGGPLSPAWMLNQ 152 (666)
T ss_pred eechHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHh-cccHHHHHHHHhcCccccCCCCCHHHHHHH
Confidence 4668999999999999999988764 1231 110000111 2221
Q ss_pred hh-HHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeee-------------------ccCCHHHHHHHHH
Q 006713 63 AD-LVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKL-------------------RSSDRAYLQLVER 122 (634)
Q Consensus 63 ~d-l~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~-------------------R~~~~~y~~~~~~ 122 (634)
.. -.++|+...+.||-++|-. + .|-.|.=|.+.+|+..+ -..||-|.+--.+
T Consensus 153 l~LqkrIidrm~~lGmTpvLPa----F----aG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~ 224 (666)
T KOG2233|consen 153 LLLQKRIIDRMLELGMTPVLPA----F----AGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGST 224 (666)
T ss_pred HHHHHHHHHHHHHcCCCccchh----h----ccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHH
Confidence 11 2467888889999988872 1 34468877777776432 1359999999999
Q ss_pred HHHHHHHHhccccccCCCcEEEEccccCcCCCCCcHHHHHHHHHHHHH-hcCCc---e-----EEEEecC
Q 006713 123 WWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARA-HLGKD---I-----ILYTTDG 183 (634)
Q Consensus 123 ~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~-~~G~~---v-----pl~t~dg 183 (634)
|++++.+....- -+|-..--=||.---.++.+|++.+..+.-+ -.++| | -+|+.|.
T Consensus 225 Flr~~~kefG~~-----tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~ 289 (666)
T KOG2233|consen 225 FLRHQIKEFGGV-----TNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDP 289 (666)
T ss_pred HHHHHHHHhCCc-----ccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCC
Confidence 988888877431 1344444445544334688999887766533 22333 2 2578887
No 192
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=32.25 E-value=1.3e+02 Score=31.35 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcC--ceEEecCCCccc-------ceecCC
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD--LLVMLRPGPYIC-------AEWDLG 94 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~g--L~VilrpgPyi~-------aEw~~G 94 (634)
+.=-++|++=.++|.+.+-|-.+.+. ..+.+|++.|++.| +.||+..-|-.. +++-.-
T Consensus 147 ~~~~~~L~~Ki~aGA~f~iTQ~~fd~-------------~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv 213 (274)
T cd00537 147 EEDIKRLKRKVDAGADFIITQLFFDN-------------DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGV 213 (274)
T ss_pred HHHHHHHHHHHHCCCCEEeecccccH-------------HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCC
Confidence 33344555555679999999554433 23899999999998 557776555432 344444
Q ss_pred CCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhcc
Q 006713 95 GFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 95 g~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (634)
.+|.|+.++... ...+....++.-.++..+++..+.+
T Consensus 214 ~vP~~~~~~l~~--~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 214 EIPDWLLERLEK--LKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred CCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 689988863211 1122233445555556666666654
No 193
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=31.37 E-value=39 Score=37.48 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=47.0
Q ss_pred EEEeecCCC-CCHhhHHHHHHHHHHcC--CCEEEEeccCCCCCCCCCceeecch-hhHHHHHHHHHHcCceEEec
Q 006713 12 IGGDLHYFR-ILPQHWEDRLLRAKALG--LNTIQTYVPWNLHEPKPGKLVFSGI-ADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 12 ~~g~~hy~r-~p~~~W~~~l~~~k~~G--~N~V~~yv~W~~hEp~~G~~df~~~-~dl~~fl~~a~~~gL~Vilr 82 (634)
-.++.+.|+ ...+.-++.|++-+..| -..|-| +|+|-.+|. .+|.++.++|+++|.++++.
T Consensus 143 s~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a~L~VD 207 (388)
T COG0156 143 SRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGALLYVD 207 (388)
T ss_pred CCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCcEEEEE
Confidence 344555554 55788888888876554 455555 999999987 89999999999999998887
No 194
>PRK15492 triosephosphate isomerase; Provisional
Probab=31.31 E-value=95 Score=32.50 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=36.4
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
..++|++|++.|-+ ++-|. +-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii----GHSER-R~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI----GHSER-RHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE----Ccccc-ccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999999 44444 4444322 34567788899999999999965
No 195
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=31.13 E-value=1.3e+02 Score=37.47 Aligned_cols=67 Identities=7% Similarity=0.008 Sum_probs=50.6
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecc--hhhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~--~~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
+.+..++.++++++.+|-+=.+++-|..+.- -..|+|+- .-|..++++..++.|+++++-.-|+|..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 3667789999999999998777766665542 23455543 2489999999999999988876777764
No 196
>PLN02561 triosephosphate isomerase
Probab=31.09 E-value=95 Score=32.40 Aligned_cols=49 Identities=16% Similarity=-0.014 Sum_probs=36.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
..++|++|++.|-+ ++-|.+ -.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR-~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL----GHSERR-ALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 45889999999998 444444 444433 34577788899999999999966
No 197
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.97 E-value=1.5e+02 Score=31.40 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=44.6
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecc---hhhHHHHHHHHHHcCceEEec
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG---IADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~---~~dl~~fl~~a~~~gL~Vilr 82 (634)
...+.-++-++-+.++|+..|-+-.-|...+ ....+||+. ..||.++++-|++.|+.|+|.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEE
Confidence 3577888999999999999999999998722 345677763 579999999999999888887
No 198
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=30.76 E-value=5.7e+02 Score=25.76 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=38.5
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
+...+++.+++++++|+..|++.- .+.+..+. .+++++.++++++||.+...
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~~-~~~~~l~~~l~~~gl~i~~~ 64 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPADY-KELAELKELLADYGLEITSL 64 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCchh-hhHHHHHHHHHHcCcEEEee
Confidence 456788999999999999999865 12222211 12799999999999988764
No 199
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=30.40 E-value=1.6e+02 Score=32.03 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=52.9
Q ss_pred eeCCEeeEEEEEeecCCCC-CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecc--hhhHHHHHHHHHHcCceE
Q 006713 3 RKDGEPFRIIGGDLHYFRI-LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 3 ~~dG~~~~~~~g~~hy~r~-p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~--~~dl~~fl~~a~~~gL~V 79 (634)
.+.|.++.++.| +--+ .++.-.+.-+.+|++|.++++.|++= |+---|.|-| ..-|.-+.+.|++.||.+
T Consensus 88 ~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v 160 (335)
T PRK08673 88 EIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGLPI 160 (335)
T ss_pred EECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCCcE
Confidence 455667778888 2222 27777888889999999999998883 4333356654 344777777899999999
Q ss_pred EecC
Q 006713 80 MLRP 83 (634)
Q Consensus 80 ilrp 83 (634)
+-.+
T Consensus 161 ~tev 164 (335)
T PRK08673 161 VTEV 164 (335)
T ss_pred EEee
Confidence 8873
No 200
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=29.98 E-value=1.8e+02 Score=30.97 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcC--ceEEecCCCccc-------ceecCCCCccc
Q 006713 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD--LLVMLRPGPYIC-------AEWDLGGFPAW 99 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~g--L~VilrpgPyi~-------aEw~~Gg~P~W 99 (634)
.|++-.++|.+.+-|-.+ ||.+- +.+|++.|++.| +.||+..-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~~---~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVES---YLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchHH---HHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 566666789988888433 33333 899999999999 456666545321 45555679999
Q ss_pred ccccCCCeeeccCC-HHHHHHHHHHHHHHHHHhcc
Q 006713 100 LLAKKPALKLRSSD-RAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 100 l~~~~p~~~~R~~~-~~y~~~~~~~~~~l~~~l~~ 133 (634)
+.++.... .+| ...++.--++..++++.|.+
T Consensus 235 l~~~l~~~---~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFDGL---DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 98742211 234 34555666666667776654
No 201
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.76 E-value=1.4e+02 Score=31.24 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=80.9
Q ss_pred CCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHH-HcCceEEecCCCcccceecCCCCc
Q 006713 19 FRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQ-KLDLLVMLRPGPYICAEWDLGGFP 97 (634)
Q Consensus 19 ~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~-~~gL~VilrpgPyi~aEw~~Gg~P 97 (634)
.+...+.-.+..+.+-++|+..|++..+-...+...|...|.....+.++.++.+ +..+-+++|++-. -.
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~ 85 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND---------DI 85 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC---------CH
Confidence 3567888899999999999999999988876666677777776555666666553 4555667776521 11
Q ss_pred cccccc-CCCee-eccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCCcHHHHHHHHHHHHHhcCCc
Q 006713 98 AWLLAK-KPALK-LRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKD 175 (634)
Q Consensus 98 ~Wl~~~-~p~~~-~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~~G~~ 175 (634)
..+... ...+. +|-..+. +.+++ +..+++.++. .|--+.++++.=++ .+.+|+..+.+.+.+ .|.+
T Consensus 86 ~~l~~a~~~gv~~iri~~~~--~~~~~-~~~~i~~ak~-----~G~~v~~~~~~a~~---~~~~~~~~~~~~~~~-~g~~ 153 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHK--HEFDE-ALPLIKAIKE-----KGYEVFFNLMAISG---YSDEELLELLELVNE-IKPD 153 (266)
T ss_pred HHHHHHhcCCcCEEEEeccc--ccHHH-HHHHHHHHHH-----CCCeEEEEEEeecC---CCHHHHHHHHHHHHh-CCCC
Confidence 111110 01111 2322111 11111 1223333332 23345566665443 456677777777777 5776
Q ss_pred eEEEEecC
Q 006713 176 IILYTTDG 183 (634)
Q Consensus 176 vpl~t~dg 183 (634)
. ++-+|.
T Consensus 154 ~-i~l~DT 160 (266)
T cd07944 154 V-FYIVDS 160 (266)
T ss_pred E-EEEecC
Confidence 4 444565
No 202
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=29.25 E-value=1.2e+02 Score=32.49 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=42.1
Q ss_pred EEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCC-------------CCCceeecchhhHHHHHHHHHHcCc
Q 006713 12 IGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-------------KPGKLVFSGIADLVSFLKLCQKLDL 77 (634)
Q Consensus 12 ~~g~~hy~-r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-------------~~G~~df~~~~dl~~fl~~a~~~gL 77 (634)
.-|+-+.. |||.+.|.+.++.+++.|+..| +.+.-.|. .+...|..|..+|.++..+.+...+
T Consensus 189 ~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l 265 (352)
T PRK10422 189 QPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHAQL 265 (352)
T ss_pred ecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhCCE
Confidence 33443444 5999999999999988887655 33433221 1123455555556666666666555
Q ss_pred eEEecCCC
Q 006713 78 LVMLRPGP 85 (634)
Q Consensus 78 ~VilrpgP 85 (634)
+|=-..||
T Consensus 266 ~v~nDSGp 273 (352)
T PRK10422 266 FIGVDSAP 273 (352)
T ss_pred EEecCCHH
Confidence 55544444
No 203
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=28.80 E-value=59 Score=38.62 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEE-ec--------cCCCCCC----CCCceeec----chhhHHHHHHHHHHcCceEEecC
Q 006713 27 EDRLLRAKALGLNTIQT-YV--------PWNLHEP----KPGKLVFS----GIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~-yv--------~W~~hEp----~~G~~df~----~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
+++|..+|.+|+|+|+. .| .|..+-- .-+.|--. ...++..+++.|+..||.|||..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45599999999999996 22 2332210 00111000 12489999999999999999983
No 204
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=28.62 E-value=42 Score=33.70 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=49.9
Q ss_pred eEEEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCC--------CCCC----ceeecchhhHHHHHHHHHHc
Q 006713 9 FRIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHE--------PKPG----KLVFSGIADLVSFLKLCQKL 75 (634)
Q Consensus 9 ~~~~~g~~hy~-r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hE--------p~~G----~~df~~~~dl~~fl~~a~~~ 75 (634)
+.+.-|.-+.. |||.+.|.+.++++++.| ..+.+.|.-.| ..++ ..++.+..+|..++.+.+..
T Consensus 108 i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a 184 (247)
T PF01075_consen 108 IGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRA 184 (247)
T ss_dssp EEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTS
T ss_pred EEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcC
Confidence 34444444544 599999999999999998 55667787666 1233 57888888999999999999
Q ss_pred CceEEecCCC
Q 006713 76 DLLVMLRPGP 85 (634)
Q Consensus 76 gL~VilrpgP 85 (634)
.+.|=...||
T Consensus 185 ~~~I~~Dtg~ 194 (247)
T PF01075_consen 185 DLVIGNDTGP 194 (247)
T ss_dssp SEEEEESSHH
T ss_pred CEEEecCChH
Confidence 9988888766
No 205
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.53 E-value=2.8e+02 Score=25.14 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=45.7
Q ss_pred CCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 5 DGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 5 dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.|.-+++.+|.. ...-.++.+.+-++.+.+.|+-.+-+.+-=...+- =+.++++|.+++|-+|.-|
T Consensus 41 ~~gElvlttg~~-~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~i------------P~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 41 RGGELVLTTGYA-LRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEI------------PEEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCeEEEECCcc-cCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccC------------CHHHHHHHHHcCCCEEEeC
Confidence 344455555522 22335678999999999999998888543222222 2789999999999998875
No 206
>PTZ00333 triosephosphate isomerase; Provisional
Probab=28.18 E-value=1.1e+02 Score=31.82 Aligned_cols=49 Identities=20% Similarity=0.051 Sum_probs=37.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
-.++|++|++.|-+ -|..++-.|.=+ +.++.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 36899999999999 444444444333 35688889999999999999965
No 207
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=28.09 E-value=1.7e+02 Score=29.37 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=41.9
Q ss_pred EEEEEeecCCCCCHhhHHHHHHHHH-HcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 10 RIIGGDLHYFRILPQHWEDRLLRAK-ALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 10 ~~~~g~~hy~r~p~~~W~~~l~~~k-~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
++..+.+.+.. .+.+.+.|++.. +.|+-.|.++-... .++.......+.++++|+++|+-|++.+|
T Consensus 72 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 72 FIGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDLG-------GFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSET-------TCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEEecCCC--chhHHHHHHHhccccceeeeEecCCCC-------ccccccHHHHHHHHHHHHhhccceeeecc
Confidence 33444555433 456666666655 99999999865332 22222222226999999999999999976
No 208
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=27.75 E-value=7.3e+02 Score=26.28 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=55.2
Q ss_pred HHHHHHHcCCCEEEEe---ccCCCCCCCCCceeecc--hhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccccc
Q 006713 29 RLLRAKALGLNTIQTY---VPWNLHEPKPGKLVFSG--IADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~y---v~W~~hEp~~G~~df~~--~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~ 103 (634)
.|+-..+.|+..-|+- +||..|+. -.|++.. .-.+.+.=++|+++|+++-+.||.|+-
T Consensus 50 ~L~~n~~~~I~~yRisS~liP~ashp~--~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~v--------------- 112 (275)
T PF03851_consen 50 ILEYNIAHGIRFYRISSDLIPLASHPE--VGWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFTV--------------- 112 (275)
T ss_dssp HHHHHHHTT--EEE--TTSSTTTTSTT----S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT-----------------
T ss_pred HHHHHHHcCCCEEecCcccCCCCCCcc--cccchHHHHHHHHHHHHHHHHHcCCeEEecCCccee---------------
Confidence 4444567788888774 78999982 2244431 235677778888999999999998752
Q ss_pred CCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCC-CcEEEEccccCcCCCCCcHHHHHHHHHHHHH
Q 006713 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIG-GPIVMVQIENEFGSYGDDKEYLHHLVTLARA 170 (634)
Q Consensus 104 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~g-gpII~~QvENEyg~~~~~~~y~~~l~~~~~~ 170 (634)
+-+.++.-.++.-+-++.-...+.-.-.... +.+|-+.|.= .||+..+-++.+.+.++.
T Consensus 113 -----LnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG---~YgdK~~al~RF~~~~~~ 172 (275)
T PF03851_consen 113 -----LNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGG---VYGDKEAALERFIENFKR 172 (275)
T ss_dssp -----TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-------SS-HHHHHHHHHHHHHT
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCC---CCCChHHHHHHHHHHHhh
Confidence 2334454444443333333333322212211 3677788763 455555555555555544
No 209
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.54 E-value=1e+02 Score=31.88 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCCEEEEec--cCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 25 HWEDRLLRAKALGLNTIQTYV--PWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~yv--~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
..++.|+.++++|+..|.+.- .|...+ .+-.++. -...+..+.++|+++|+.+.+.+
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~-~~~~~~~-~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQA-NNETRRR-FIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccccccc-HHHHHHH-HHHHHHHHHHHHHHhCCEEEEee
Confidence 467788999999999998621 110000 0111110 01357889999999999999985
No 210
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=27.49 E-value=1.1e+02 Score=32.56 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=50.7
Q ss_pred EeeEE-EEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEeccCC-------C-CC--CCCCceeecchhhHHHHHHHHHH
Q 006713 7 EPFRI-IGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWN-------L-HE--PKPGKLVFSGIADLVSFLKLCQK 74 (634)
Q Consensus 7 ~~~~~-~~g~~hy~-r~p~~~W~~~l~~~k~~G~N~V~~yv~W~-------~-hE--p~~G~~df~~~~dl~~fl~~a~~ 74 (634)
+++++ ..|+-+.. |||.+.|.+.++++.+-|+..|-++-+-. . .+ +.+...++.|..+|.+++.+.+.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 34443 33433333 69999999999999887877665432210 0 00 22345777787788888888887
Q ss_pred cCceEEecCCC
Q 006713 75 LDLLVMLRPGP 85 (634)
Q Consensus 75 ~gL~VilrpgP 85 (634)
..+.|=...||
T Consensus 261 a~l~Vs~DSGp 271 (344)
T TIGR02201 261 ARLFIGVDSVP 271 (344)
T ss_pred CCEEEecCCHH
Confidence 77777666665
No 211
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.19 E-value=67 Score=33.19 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 24 QHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 24 ~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
+.+++.++.++++|+.+|.+...+....+.+..+. .-...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLK-RVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHH-HHHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788899999999998876333221111111111 0123578888888899999998853
No 212
>PRK14566 triosephosphate isomerase; Provisional
Probab=27.18 E-value=1.2e+02 Score=31.84 Aligned_cols=49 Identities=16% Similarity=-0.012 Sum_probs=36.0
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
..++|++|++.|-+ ++-|.+ -.|.= -+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii----GHSERR-~~f~E-td~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII----GHSERR-RMYGE-TSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CCCCc-CHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999998 444444 44432 234567788899999999999955
No 213
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=26.69 E-value=2.5e+02 Score=30.23 Aligned_cols=120 Identities=22% Similarity=0.176 Sum_probs=76.3
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCC
Q 006713 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKP 105 (634)
Q Consensus 26 W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p 105 (634)
-..++...++.|.+||=- +. .-+--||..+..+.+++-||.+|...|.|.-+.| |.|+... |
T Consensus 50 ~~~e~~~~~a~Gg~TIVD--------~T----~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~-----p~~~~~~-~ 111 (316)
T COG1735 50 AIAELKRLMARGGQTIVD--------AT----NIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFH-----PEYFALR-P 111 (316)
T ss_pred HHHHHHHHHHcCCCeEee--------CC----ccccCcCHHHHHHHHHHhCCcEEEeccccccccc-----hhHHhhC-C
Confidence 345677778889998753 11 1122479999999999999999999999998875 4777652 2
Q ss_pred CeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCC-CcHHHHHHHHHHHHHhcCCceEEEE
Q 006713 106 ALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYG-DDKEYLHHLVTLARAHLGKDIILYT 180 (634)
Q Consensus 106 ~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~-~~~~y~~~l~~~~~~~~G~~vpl~t 180 (634)
++.+.+.+.+.+..= =.|+=|..-|=-|-|.+. =.+.-.+.|+.+++.+.-..+|+.|
T Consensus 112 --------------i~~~ae~~v~ei~~G---i~gT~ikAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 --------------IEELAEFVVKEIEEG---IAGTGIKAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred --------------HHHHHHHHHHHHHhc---ccCCccccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEE
Confidence 344444555555421 124444444555666554 2344566777777775444567654
No 214
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.66 E-value=4.9e+02 Score=26.97 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec--chhhHHHHHHHHHHcCceE--EecCCCcccceecCCCCccccc
Q 006713 26 WEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS--GIADLVSFLKLCQKLDLLV--MLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 26 W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~--~~~dl~~fl~~a~~~gL~V--ilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
-.+.++.++++|+++|++++-.. ..|... ...+..+|-+.++++++.+ +.-=+||.
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~-------------- 72 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSP------RWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL-------------- 72 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCc------cccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee--------------
Confidence 35688999999999999965421 112111 2345788888899998863 33334442
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEc
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQ 146 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~Q 146 (634)
+.+-+.|+.-+++..+.+.+.+..-+.+ |.+++.+.
T Consensus 73 -----iNlas~~~~~r~~sv~~~~~~i~~A~~l----ga~~vv~H 108 (274)
T TIGR00587 73 -----INLASPDEEKEEKSLDVLDEELKRCELL----GIMLYNFH 108 (274)
T ss_pred -----eecCCCCHHHHHHHHHHHHHHHHHHHHc----CCCEEEEC
Confidence 1223456777777777777776666554 33444444
No 215
>PRK14567 triosephosphate isomerase; Provisional
Probab=26.50 E-value=1.3e+02 Score=31.34 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
-.++|++|++.|-+ ++-|.+ -.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii----GHSERR-~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI----GHSERR-SLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45889999999998 444444 444322 34577788899999999999965
No 216
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=26.22 E-value=1.3e+02 Score=33.63 Aligned_cols=62 Identities=16% Similarity=0.040 Sum_probs=44.0
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCce-EEecC
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRP 83 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~-Vilrp 83 (634)
+..+.-+..|+.+|++|+|.|-++.+=..--..+-.|.-. ..|-+.+++++.+.|.. .+|..
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~Ldi 252 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDI 252 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeec
Confidence 4567888999999999999999976544322222233221 35788899999999996 56664
No 217
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.03 E-value=1e+02 Score=31.77 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=38.6
Q ss_pred eeCCEeeEEEEEeecCCC-CCHhhHHHHHHHHHHcCCCEEEEe-ccCCCCC-CCCCcee
Q 006713 3 RKDGEPFRIIGGDLHYFR-ILPQHWEDRLLRAKALGLNTIQTY-VPWNLHE-PKPGKLV 58 (634)
Q Consensus 3 ~~dG~~~~~~~g~~hy~r-~p~~~W~~~l~~~k~~G~N~V~~y-v~W~~hE-p~~G~~d 58 (634)
.+.|+++.++.|..|+.. ....+-+--++.||++|+..|-.- -.=++.+ -+||.+-
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdlv 105 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLILTNAAGGLRQDWGPGTPV 105 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcccccCCCCCCCCCEE
Confidence 478999999999999644 445666788999999999876542 2222333 2566653
No 218
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.03 E-value=1.7e+02 Score=32.78 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=58.1
Q ss_pred eCCEeeEEEEEeecCCCCC---HhhHHHHHHHHHHcCCCE--E--EEeccCCCCCCCCCceeecchhhHHHHHHHHHHcC
Q 006713 4 KDGEPFRIIGGDLHYFRIL---PQHWEDRLLRAKALGLNT--I--QTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (634)
Q Consensus 4 ~dG~~~~~~~g~~hy~r~p---~~~W~~~l~~~k~~G~N~--V--~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~g 76 (634)
+.+..|+|+.+.-+-++.+ ++.-+.-.+.+++.|+.. | .....-|+-.|.+..+..+- .-+.+-|+.|++.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv-~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSY-DAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHH-HHHHHHHHHHHHcC
Confidence 4567888888877766533 566677778888888862 3 33233788888888877763 23788899999999
Q ss_pred ce-EEecCCC
Q 006713 77 LL-VMLRPGP 85 (634)
Q Consensus 77 L~-VilrpgP 85 (634)
.. |++.||-
T Consensus 232 a~~VV~HPGs 241 (413)
T PTZ00372 232 IKLYNFHPGS 241 (413)
T ss_pred CCEEEECCCc
Confidence 95 7778874
No 219
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=25.98 E-value=4.1e+02 Score=28.74 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEE-------eccCCCCCCCCCceeecchhh-HHHHHHHHHHcCceEEec
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQT-------YVPWNLHEPKPGKLVFSGIAD-LVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~-------yv~W~~hEp~~G~~df~~~~d-l~~fl~~a~~~gL~Vilr 82 (634)
..++.| .+.+|++|+.-|-. +-.|...-..-..-+-...+| +.+|.+.|+|+||++-+=
T Consensus 91 fD~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y 157 (346)
T PF01120_consen 91 FDADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLY 157 (346)
T ss_dssp --HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 345555 56899999996543 344665433222222222344 568999999999998884
No 220
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=25.64 E-value=7.3e+02 Score=25.29 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=84.5
Q ss_pred eeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEecc-CCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCc
Q 006713 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVP-WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPY 86 (634)
Q Consensus 8 ~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~-W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPy 86 (634)
.+.+++|+....|.....-+...+.+.+.|+.+-.+.+. ..+..+ .. ...-.+.++.+..++++-.||+.|
T Consensus 28 kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~--d~---~~~p~v~~l~~~v~~ADgvii~TP--- 99 (219)
T TIGR02690 28 RILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDA--AH---ADHPKVRELRQLSEWSEGQVWCSP--- 99 (219)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCc--Cc---ccCHHHHHHHHHHHhCCEEEEeCC---
Confidence 467899999998888877777788888778876666542 222211 11 112257888888888888888887
Q ss_pred ccceecCCCCcc-------ccccc---------CCCeeeccCCHHHH-HHHHHHHHHHHHHhccccccCCCcEEEEcccc
Q 006713 87 ICAEWDLGGFPA-------WLLAK---------KPALKLRSSDRAYL-QLVERWWGVLLPKIAPLLYDIGGPIVMVQIEN 149 (634)
Q Consensus 87 i~aEw~~Gg~P~-------Wl~~~---------~p~~~~R~~~~~y~-~~~~~~~~~l~~~l~~~~~~~ggpII~~QvEN 149 (634)
|. ++++|. |+.+. .| +-+-+...... .....-++.++..+.-..... .+...+..+
T Consensus 100 ---EY-n~sipg~LKNaiDwls~~~~~~~~~~~Kp-vaivgaSgg~~g~ra~~~LR~vl~~l~a~v~p~--~v~i~~a~~ 172 (219)
T TIGR02690 100 ---ER-HGAITGSQKDQIDWIPLSVGPVRPTQGKT-LAVMQVSGGSQSFNAVNILRRLGRWMRMPTIPN--QSSVAKAFD 172 (219)
T ss_pred ---cc-ccCcCHHHHHHHHhcccCcccccccCCCc-EEEEEeCCcHhHHHHHHHHHHHHHHCCCccccc--hhhhhhhHh
Confidence 33 666665 77652 11 11212222221 122222344444443332222 455556666
Q ss_pred CcCCCC--CcHHHHHHHHHHHHH
Q 006713 150 EFGSYG--DDKEYLHHLVTLARA 170 (634)
Q Consensus 150 Eyg~~~--~~~~y~~~l~~~~~~ 170 (634)
+++.-| .+.+..+.|.+++.+
T Consensus 173 ~fd~~G~l~d~~~~~~l~~~l~~ 195 (219)
T TIGR02690 173 EFDEAGRMKPSDYYDRVVDVMEE 195 (219)
T ss_pred hcCcCCCCCCHHHHHHHHHHHHH
Confidence 775433 466666666666554
No 221
>PRK06852 aldolase; Validated
Probab=25.50 E-value=1.3e+02 Score=32.30 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=51.3
Q ss_pred HHHHHHcC------CCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccccc
Q 006713 30 LLRAKALG------LNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAK 103 (634)
Q Consensus 30 l~~~k~~G------~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~ 103 (634)
.+.+-++| ..+|.+.|+|. +.+...-..|+.+..+.|++.||-+|+.. | |.
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~G------s~~E~~ml~~l~~v~~ea~~~GlPll~~~--y----------pr----- 177 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLG------SEYESEMLSEAAQIIYEAHKHGLIAVLWI--Y----------PR----- 177 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecC------CHHHHHHHHHHHHHHHHHHHhCCcEEEEe--e----------cc-----
Confidence 44566666 66999999998 23334556789999999999999988741 1 11
Q ss_pred CCCeeeccCCHHHHHHHHHHHHHHHHHhcc
Q 006713 104 KPALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 104 ~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (634)
-+.+ -...+|.+.+.+.|--.+|...+.+
T Consensus 178 G~~i-~~~~~~~~ia~aaRiaaELGADIVK 206 (304)
T PRK06852 178 GKAV-KDEKDPHLIAGAAGVAACLGADFVK 206 (304)
T ss_pred Cccc-CCCccHHHHHHHHHHHHHHcCCEEE
Confidence 1122 2345778888887744444444433
No 222
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.48 E-value=1.5e+02 Score=29.08 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=33.3
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.+++++++|.+.|.+..... ..++.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999999864431 134789999999999999885
No 223
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.47 E-value=3.7e+02 Score=29.58 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCC-EEEEeccCCCCCCCCCceeec----c-hhhHHHHHHH----HHHcCceEEecCCCcccceecCCCCc
Q 006713 28 DRLLRAKALGLN-TIQTYVPWNLHEPKPGKLVFS----G-IADLVSFLKL----CQKLDLLVMLRPGPYICAEWDLGGFP 97 (634)
Q Consensus 28 ~~l~~~k~~G~N-~V~~yv~W~~hEp~~G~~df~----~-~~dl~~fl~~----a~~~gL~VilrpgPyi~aEw~~Gg~P 97 (634)
+.++++.+.|+. .+.+ ++|-+.+..|+.- . ..+++++++. +++.|..|.++
T Consensus 222 ~~i~~L~~~gl~~~Lai----SL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ie--------------- 282 (368)
T PRK14456 222 PEIDRLATSGLKTKLAV----SLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLV--------------- 282 (368)
T ss_pred HHHHHHHHcCCCceEEE----EecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEE---------------
Confidence 457888888885 4555 6677666666532 1 3355555554 44556666555
Q ss_pred ccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC--CC-CcHHHHHHHHHHHHHhcCC
Q 006713 98 AWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS--YG-DDKEYLHHLVTLARAHLGK 174 (634)
Q Consensus 98 ~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~--~~-~~~~y~~~l~~~~~~~~G~ 174 (634)
+++ .|++ .+++.-.+...+|++.+.-++ ++|-+ |.++. |. ...+++..+++.+++ .|+
T Consensus 283 -yvL--I~Gv---NDs~eda~~L~~~l~~~~~~V---------nlIpy---n~~~~~~~~~ps~e~i~~F~~~L~~-~Gi 343 (368)
T PRK14456 283 -YML--LEGI---NDSPEDARKLIRFASRFFCKI---------NLIDY---NSIVNIKFEPVCSSTRERFRDRLLD-AGL 343 (368)
T ss_pred -EEE--EcCC---CCCHHHHHHHHHHHhcCCCee---------EEeee---ccCCCCCCCCCCHHHHHHHHHHHHH-CCC
Confidence 111 1222 345555566666554431111 23321 33332 22 567789999999998 799
Q ss_pred ceEEEEecCCCcccccCCccC
Q 006713 175 DIILYTTDGGTRETLLKGTIR 195 (634)
Q Consensus 175 ~vpl~t~dg~~~~~~~~g~~~ 195 (634)
+|.+=.+=|.. -...||.|.
T Consensus 344 ~vtvR~~~G~d-i~aACGQL~ 363 (368)
T PRK14456 344 QVTVRKSYGTT-INAACGQLA 363 (368)
T ss_pred cEEeeCCCCcc-hhhcCCcch
Confidence 98886555532 234566654
No 224
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=25.35 E-value=32 Score=29.28 Aligned_cols=40 Identities=33% Similarity=0.519 Sum_probs=29.3
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCc
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDL 77 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL 77 (634)
+....|-.-++.+-. .||.|..|||.. |..||++|.|--+
T Consensus 19 ls~hhWLNflQaAyR--------------L~PgPS~~DF~q---Lr~flk~alkTpv 58 (92)
T PF02228_consen 19 LSTHHWLNFLQAAYR--------------LQPGPSSFDFHQ---LRNFLKLALKTPV 58 (92)
T ss_dssp STHHHHHHHHHHHHH--------------SS---STTTHHH---HHHHHHHHHT-TT
T ss_pred cCHHHHHHHHHHHHh--------------cCCCCCcccHHH---HHHHHHHHHcCCe
Confidence 447889888887765 489999999988 9999999987543
No 225
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=25.29 E-value=90 Score=34.08 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
..+.+-++|..+|.+.|+|.. .+...-..|+.+..+.|++.||-||+.
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLW 198 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 366788999999999999982 223445568999999999999998885
No 226
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.04 E-value=54 Score=32.01 Aligned_cols=87 Identities=17% Similarity=0.112 Sum_probs=46.2
Q ss_pred EEeecCCCC---CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec-chhhHHHHHHHHHHc-CceEEecCCCcc
Q 006713 13 GGDLHYFRI---LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKL-DLLVMLRPGPYI 87 (634)
Q Consensus 13 ~g~~hy~r~---p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~-~~~dl~~fl~~a~~~-gL~VilrpgPyi 87 (634)
-|.+||++- +.++-+.-++.++..+.+. .+|--.|...+. .-+ -...+.+|++..+++ |..++|=.++..
T Consensus 54 ~G~Yhy~~~~~~a~~qA~~f~~~~~~~~~~~----~~~lD~E~~~~~-~~~~~~~~~~~f~~~v~~~~G~~~~iY~~~~~ 128 (184)
T cd06525 54 VGFYHFLVGTSNPEEQAENFYNTIKGKKMDL----KPALDVEVNFGL-SKDELNDYVLRFIEEFEKLSGLKVGIYTYTSF 128 (184)
T ss_pred eEEEEEeeCCCCHHHHHHHHHHhccccCCCC----CeEEEEecCCCC-CHHHHHHHHHHHHHHHHHHHCCCeEEEecHHH
Confidence 366666652 2444455555555544331 122233332221 000 123578899999888 999888777754
Q ss_pred ccee---cCCCCcccccccCC
Q 006713 88 CAEW---DLGGFPAWLLAKKP 105 (634)
Q Consensus 88 ~aEw---~~Gg~P~Wl~~~~p 105 (634)
.... .....|.|+.+ ++
T Consensus 129 ~~~~~~~~~~~~~lWiA~-Y~ 148 (184)
T cd06525 129 INNNLDSRLSSYPLWIAN-YG 148 (184)
T ss_pred HHHhccccccCCCeEEEe-cc
Confidence 3221 23356788876 44
No 227
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=24.92 E-value=44 Score=35.73 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=38.9
Q ss_pred eeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEE
Q 006713 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 8 ~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vi 80 (634)
..++++-+..--++ ++.|++.+..+-++|+|.|+- +|+.- .|..+|.++|+++|..++
T Consensus 34 ~~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L---------~ddpel~~~A~~~g~~i~ 91 (301)
T PF07755_consen 34 DTLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFL---------SDDPELAAAAKKNGVRII 91 (301)
T ss_dssp SEEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-H---------CCHHHHHCCHHCCT--EE
T ss_pred CEEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhh---------ccCHHHHHHHHHcCCeEe
Confidence 34555555444455 489999999999999999997 77742 357899999999998654
No 228
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.89 E-value=59 Score=35.14 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCC------CCCCCceeecchhhHHHHHHHHHHcCceE
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLH------EPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~h------Ep~~G~~df~~~~dl~~fl~~a~~~gL~V 79 (634)
++.|++||++|++.+.. ...... .-.|++..++ +..+.++.|++.||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~-~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPG-TAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccC-cchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 67899999999998741 011111 1123333332 3578999999999965
No 229
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.62 E-value=1.3e+02 Score=30.98 Aligned_cols=73 Identities=23% Similarity=0.214 Sum_probs=52.5
Q ss_pred EEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCC-----------CCCceeecchhhHHHHHHHHHHcCceE
Q 006713 12 IGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEP-----------KPGKLVFSGIADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 12 ~~g~~hy~-r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp-----------~~G~~df~~~~dl~~fl~~a~~~gL~V 79 (634)
..|+-+.. +||.+.|.+.++++++.|++.|-+.-+ .|. .+...++.+..++.+++.+.++..+.|
T Consensus 127 ~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~---~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I 203 (279)
T cd03789 127 PPGASGPAKRWPAERFAALADRLLARGARVVLTGGP---AERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVV 203 (279)
T ss_pred CCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEech---hhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEE
Confidence 33444444 489999999999999888887755322 111 234567788788999999999999888
Q ss_pred EecCCCcc
Q 006713 80 MLRPGPYI 87 (634)
Q Consensus 80 ilrpgPyi 87 (634)
=...||.-
T Consensus 204 ~~Dsg~~H 211 (279)
T cd03789 204 TNDSGPMH 211 (279)
T ss_pred eeCCHHHH
Confidence 88877643
No 230
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=24.26 E-value=1.7e+02 Score=30.76 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=46.9
Q ss_pred eEEEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEeccCCCC-C---------CCCCceeecchhhHHHHHHHHHHcCc
Q 006713 9 FRIIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNLH-E---------PKPGKLVFSGIADLVSFLKLCQKLDL 77 (634)
Q Consensus 9 ~~~~~g~~hy~-r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~h-E---------p~~G~~df~~~~dl~~fl~~a~~~gL 77 (634)
+.+.-|.-+.. |||.+.|.+.++.+.+.|+..|=+ +.-- | ..++. +..|..+|.+++.+.+...+
T Consensus 182 i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~---~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 182 AVLLHATSRDDKTWPEERWRELARLLLARGLQIVLP---WGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred EEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEe---CCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHcCCE
Confidence 34455554555 599999999999998778776643 2210 1 11222 56666678888887777777
Q ss_pred eEEecCCC
Q 006713 78 LVMLRPGP 85 (634)
Q Consensus 78 ~VilrpgP 85 (634)
.|=...||
T Consensus 258 ~I~~DSgp 265 (319)
T TIGR02193 258 VVGVDTGL 265 (319)
T ss_pred EEeCCChH
Confidence 76666554
No 231
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.02 E-value=1.8e+02 Score=32.81 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=45.3
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEecc----CCCCC---C---CCCcee-----------------------ec---chhh
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVP----WNLHE---P---KPGKLV-----------------------FS---GIAD 64 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~----W~~hE---p---~~G~~d-----------------------f~---~~~d 64 (634)
.|.+...+.|+.|....+|....++- |-+-- | +.|.|. .+ -..|
T Consensus 19 ~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~d 98 (445)
T cd06569 19 HSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRAD 98 (445)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHH
Confidence 47899999999999999999999873 54311 0 011110 01 1247
Q ss_pred HHHHHHHHHHcCceEEec
Q 006713 65 LVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 65 l~~fl~~a~~~gL~Vilr 82 (634)
+..+++.|+++|+.||..
T Consensus 99 i~eiv~yA~~rgI~VIPE 116 (445)
T cd06569 99 YIEILKYAKARHIEVIPE 116 (445)
T ss_pred HHHHHHHHHHcCCEEEEc
Confidence 999999999999999987
No 232
>PLN02389 biotin synthase
Probab=23.99 E-value=97 Score=34.22 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEecc--CCCCCCCCCceeecchhhHHHHHHHHHHcCceE
Q 006713 27 EDRLLRAKALGLNTIQTYVP--WNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~--W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~V 79 (634)
++.+++||++|++.+..-+- -..+...-..-+|+. .-+.++.|++.|+.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~---rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDD---RLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHH---HHHHHHHHHHcCCeE
No 233
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=23.92 E-value=3.3e+02 Score=27.78 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=51.6
Q ss_pred CCceeec-chhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhc
Q 006713 54 PGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (634)
Q Consensus 54 ~G~~df~-~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (634)
.|...+. ...++..+++.|++.|++|++..| .|..+.+ . .+ ..++.- -+++.+.++..++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~---~-----~~---~~~~~~---r~~fi~~lv~~~~ 96 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEF---T-----AA---LNDPAK---RKALVDKIINYVV 96 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcc---h-----hh---hcCHHH---HHHHHHHHHHHHH
Confidence 5676664 335788999999999999999954 1221111 0 11 124433 3466777777777
Q ss_pred cccccCCCcEEEEccccCcCCCCCcHHH---HHHHHHHHHH
Q 006713 133 PLLYDIGGPIVMVQIENEFGSYGDDKEY---LHHLVTLARA 170 (634)
Q Consensus 133 ~~~~~~ggpII~~QvENEyg~~~~~~~y---~~~l~~~~~~ 170 (634)
.+.. =++.|+=|+.... ...| ++.|++.+++
T Consensus 97 ~~~~------DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 97 SYNL------DGIDVDLEGPDVT-FGDYLVFIRALYAALKK 130 (253)
T ss_pred HhCC------CceeEEeeccCcc-HhHHHHHHHHHHHHHhh
Confidence 6532 2456666764321 2334 4444444443
No 234
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=23.67 E-value=3.2e+02 Score=29.45 Aligned_cols=132 Identities=21% Similarity=0.345 Sum_probs=67.0
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCccccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLL 101 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~ 101 (634)
..+...+.-+.+...|+|.|.+ |=....+-.-.=+....+.++-+..+.+|++|-|-.- ..+--+.||++
T Consensus 55 ~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL~---- 124 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGLP---- 124 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-S----
T ss_pred chhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCcC----
Confidence 3567788889999999999997 2222222111112334678888888999999988621 11222234432
Q ss_pred ccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCC--CC-CcHHHHHHHHHHHHHhcC
Q 006713 102 AKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGS--YG-DDKEYLHHLVTLARAHLG 173 (634)
Q Consensus 102 ~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~--~~-~~~~y~~~l~~~~~~~~G 173 (634)
+.|| .-.+|++|++..+.+|-.+.-.=||=++=.--|.+.|- |+ +-.+=..-|+++++-+-|
T Consensus 125 ---------TaDP-ld~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~YgRthAdGANmlA~Al~P~GG 189 (328)
T PF07488_consen 125 ---------TADP-LDPEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFTYGRTHADGANMLARALKPHGG 189 (328)
T ss_dssp ------------T-TSHHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGGGT--HHHHHHHHHHHHGGGT-
T ss_pred ---------cCCC-CCHHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCcccCCCchhhHHHHHHHhhccCC
Confidence 2232 23567777777777765443233788877778888885 44 222334566777766533
No 235
>PRK01060 endonuclease IV; Provisional
Probab=23.61 E-value=8e+02 Score=25.06 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=39.6
Q ss_pred CCHhhHHHHHHHHHHcCCCE--EEE--eccCCCCCCCCCceeecchhhHHHHHHHHHHcCce-EEecCC
Q 006713 21 ILPQHWEDRLLRAKALGLNT--IQT--YVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRPG 84 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~--V~~--yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~-Vilrpg 84 (634)
+.++.-++.-+++++.|+.. +.. ....|+..|.|...+.+ ...+.+.+++|++.|-. |++.||
T Consensus 44 ~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s-~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 44 LEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKS-RDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHH-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 44455555555677889973 332 22246666665545444 23589999999999996 556655
No 236
>PRK06703 flavodoxin; Provisional
Probab=23.56 E-value=4.8e+02 Score=24.16 Aligned_cols=96 Identities=13% Similarity=-0.062 Sum_probs=54.8
Q ss_pred eeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec---chhhHHHHHHHHHHcCceEEecCC
Q 006713 8 PFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS---GIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 8 ~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~---~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
..++++-..+-.--+|..+.+-+..+++.-++...+.++- .++++ ...-.+.+-+..++.|..++.+|
T Consensus 50 d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg--------~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~- 120 (151)
T PRK06703 50 DGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFG--------SGDTAYPLFCEAVTIFEERLVERGAELVQEG- 120 (151)
T ss_pred CcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEc--------cCCCChHHHHHHHHHHHHHHHHCCCEEcccC-
Confidence 4455544444333445567777777776656655554552 11221 12235567777788998877763
Q ss_pred CcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHHHHHHHhc
Q 006713 85 PYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWGVLLPKIA 132 (634)
Q Consensus 85 Pyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~ 132 (634)
.. ++...++...+++++.|-++|++.++
T Consensus 121 -~~-------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 -LK-------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred -eE-------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 11 11112234677888888888887654
No 237
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=23.52 E-value=1.7e+02 Score=34.18 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 18 y~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
|-..|.+.-+..++++.++|+..|+++.+.|.. +++...++.|+++|+.|...
T Consensus 85 ~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 85 YRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred cccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEEE
Confidence 444567778889999999999999998887752 57999999999999987755
No 238
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.51 E-value=1.7e+02 Score=33.54 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=45.4
Q ss_pred CCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 18 y~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
|-..|.+.-+..+++..+.|+..++++.+-|.. .++...++.+++.|..+...
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 656778888999999999999999998887765 67999999999999977544
No 239
>PLN02231 alanine transaminase
Probab=23.29 E-value=2.6e+02 Score=32.27 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 20 r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.+..+..++.++..+.-|+++--+++. |-|.|.=-.++-+. +.+++++|+++|+.||..
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e~---l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEEN---QRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHHH---HHHHHHHHHHcCCEEEEE
Confidence 445566666666666667666555665 77888766665555 899999999999999887
No 240
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.29 E-value=1.6e+02 Score=30.79 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=35.2
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
..++|++|++.|-+ ++-|.+ =.|+=+ +..+.+=++.|.++||.+||+.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR-~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI----GHSERR-LYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE----Cccccc-cccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 45889999999998 555544 222222 23466888999999999999954
No 241
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=23.14 E-value=2.1e+02 Score=30.98 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=43.0
Q ss_pred eCCEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcC
Q 006713 4 KDGEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLD 76 (634)
Q Consensus 4 ~dG~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~g 76 (634)
+.|+++..++|--++ +.-++.++++|++.+.+..+=.+|. |+. .|++.+.+.|++.|
T Consensus 225 l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f~DHh~-------yt~-~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 225 LKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAFPDHHR-------YTE-QDLEKLEAEAKAAG 281 (326)
T ss_pred ccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeECCCCCC-------CCH-HHHHHHHHhhcccc
Confidence 467888888887776 3446677889999998866655554 443 58999999999988
No 242
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=23.02 E-value=62 Score=35.12 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCEEE-----EeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceE
Q 006713 27 EDRLLRAKALGLNTIQ-----TYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLV 79 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~-----~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~V 79 (634)
++.|+++|++|++.+. ++..--.+.-.+++...+. .-+.++.|++.|+.+
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~---~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAER---WLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHH---HHHHHHHHHHcCCCc
Confidence 5668899999987654 2111111223344433333 568999999999875
No 243
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=22.98 E-value=7.2e+02 Score=24.95 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=59.6
Q ss_pred CEeeEEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCC
Q 006713 6 GEPFRIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGP 85 (634)
Q Consensus 6 G~~~~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgP 85 (634)
.-.+++++|.+-. +.+.+...+.++.+++.... +|+...=||.. +. +.+++.+..++.+..+.. -..
T Consensus 41 ~~D~viiaGDl~~-~~~~~~~~~~l~~l~~l~~~---v~~V~GNHD~~-----~~---~~~~~~~~l~~~~~~~~~-n~~ 107 (232)
T cd07393 41 PEDIVLIPGDISW-AMKLEEAKLDLAWIDALPGT---KVLLKGNHDYW-----WG---SASKLRKALEESRLALLF-NNA 107 (232)
T ss_pred CCCEEEEcCCCcc-CCChHHHHHHHHHHHhCCCC---eEEEeCCcccc-----CC---CHHHHHHHHHhcCeEEec-cCc
Confidence 4457889999863 44556777778888886443 34444444431 11 256666666676755442 122
Q ss_pred cccceecCCCCcccccccCC-----CeeeccCCHHHHHHHHHHHHHHHHHhcc
Q 006713 86 YICAEWDLGGFPAWLLAKKP-----ALKLRSSDRAYLQLVERWWGVLLPKIAP 133 (634)
Q Consensus 86 yi~aEw~~Gg~P~Wl~~~~p-----~~~~R~~~~~y~~~~~~~~~~l~~~l~~ 133 (634)
.+.+.+..-|...|.....+ +......+..+.+.-.+|+++.++....
T Consensus 108 ~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~ 160 (232)
T cd07393 108 YIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKK 160 (232)
T ss_pred EEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 22223333344444321000 0111122344456666788877777654
No 244
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=22.86 E-value=2.1e+02 Score=28.73 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=39.9
Q ss_pred CCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCcee-ecch--hhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 18 YFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLV-FSGI--ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 18 y~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~d-f~~~--~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
..|+..++--..-+.+|+-||.++-.--.=..|-...=-|- -.|. +|+.++ +..-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGEvE~~v~eL-----~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGEVERDVIEL-----DFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccchhhhhhhhc-----cccEEEEecCcceecc
Confidence 34788899888899999999987655333333332211111 1121 222222 3445799999998773
No 245
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=22.70 E-value=5.2e+02 Score=25.25 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCe
Q 006713 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPAL 107 (634)
Q Consensus 28 ~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~ 107 (634)
.+.+.+|+.|+..|-+=. .+|.-.. +..+..-++-|+++||.+ |-|...- +..
T Consensus 13 i~w~~vk~~g~~fv~ika-------teg~~~~--D~~f~~n~~~A~~aGl~~----G~Yhf~~--------------~~~ 65 (196)
T cd06416 13 STFQCLKNNGYSFAIIRA-------YRSNGSF--DPNSVTNIKNARAAGLST----DVYFFPC--------------INC 65 (196)
T ss_pred hhhhHHHhCCceEEEEEE-------EccCCcc--ChHHHHHHHHHHHcCCcc----ceEEEec--------------CCC
Confidence 456689999988655421 1221111 234788899999999765 6554321 110
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCC----cHHHHHHHHHHHHHhcCCceEEEEecC
Q 006713 108 KLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD----DKEYLHHLVTLARAHLGKDIILYTTDG 183 (634)
Q Consensus 108 ~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~----~~~y~~~l~~~~~~~~G~~vpl~t~dg 183 (634)
..++ .++++.+++.+-.. ....+.|++.||-.-+.+.. ..+++..+.+.++++ |..+.+||+-.
T Consensus 66 ---~~~~--~~Qa~~f~~~~~~~------~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~-G~~~~iYt~~~ 133 (196)
T cd06416 66 ---CGSA--AGQVQTFLQYLKAN------GIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKAL-GLKVGIYSSQY 133 (196)
T ss_pred ---CCCH--HHHHHHHHHHHHhC------CCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHh-CCeEEEEcCcc
Confidence 1222 25556655554321 11234455778754233332 124556666667774 99999998755
Q ss_pred C
Q 006713 184 G 184 (634)
Q Consensus 184 ~ 184 (634)
.
T Consensus 134 ~ 134 (196)
T cd06416 134 D 134 (196)
T ss_pred h
Confidence 3
No 246
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=22.63 E-value=2.7e+02 Score=28.17 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=78.0
Q ss_pred CHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec-chhhHHHHHHHHHHcCceEEecCCCcccceecCCCCcccc
Q 006713 22 LPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWL 100 (634)
Q Consensus 22 p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~-~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl 100 (634)
.+..+.+.++.++++|+.++.+|..... ....|..+ |..|=..-+++|+++|+ .+ |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PP-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CC-----------CCEEEE
Confidence 5788999999999999999999988765 22333333 67889999999999994 22 333344
Q ss_pred cccCCCeeeccCCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCCcHHHHHHHHHHHHHhcCCceEEEE
Q 006713 101 LAKKPALKLRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHLGKDIILYT 180 (634)
Q Consensus 101 ~~~~p~~~~R~~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~~G~~vpl~t 180 (634)
.-. .+. .+..+...+..||+.+...|... | +++ |-|+... =..++.+.. .|....+|.
T Consensus 112 avD-~d~----~~~~~~~~v~~Y~~a~~~~l~~~-----g----Y~~----GiYg~~~-~~~~~~~~~---~g~~~~~w~ 169 (212)
T cd06418 112 AVD-FDA----LDDEVTEVILPYFRGWNDALHEA-----G----YRI----GIYGSRN-VCSRVLAAA---AGLAVVSFV 169 (212)
T ss_pred Eee-cCC----CcchhHHHHHHHHHHHHHHHHhc-----C----Cce----eEEcChH-HHHHHHHhc---cCCceeEEE
Confidence 321 111 23337788888998888888643 1 221 4465322 122222221 377778888
Q ss_pred ecCC
Q 006713 181 TDGG 184 (634)
Q Consensus 181 ~dg~ 184 (634)
+|-.
T Consensus 170 a~~s 173 (212)
T cd06418 170 ADMS 173 (212)
T ss_pred ecCC
Confidence 8753
No 247
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.47 E-value=1.2e+02 Score=31.58 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
.++++.+.+.|+..|++.+..+ ++ .++...++.|+++|+.|.+-
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------~~---~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------EF---DEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------cH---HHHHHHHHHHHHCCCeEEEE
Confidence 3567788889999999987554 22 33788899999999988766
No 248
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=22.18 E-value=1.4e+02 Score=32.30 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 28 DRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 28 ~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
++++++.+.|+..|++.++++..+ .+.+.++.|+++|+.|.+-
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~------------~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD------------VSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH------------HHHHHHHHHHHCCCeEEEE
Confidence 568899999999999987655421 4789999999999988775
No 249
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=22.16 E-value=2e+02 Score=31.19 Aligned_cols=57 Identities=25% Similarity=0.478 Sum_probs=42.5
Q ss_pred CCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCc--eEEecCCCcccce
Q 006713 21 ILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDL--LVMLRPGPYICAE 90 (634)
Q Consensus 21 ~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL--~VilrpgPyi~aE 90 (634)
+....|+.--.-.+++||.+|++|-+|+.-+.. .|++.||.-.+..-- -+||. .||-
T Consensus 130 ~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh----aCAh 188 (410)
T KOG1412|consen 130 VSNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH----ACAH 188 (410)
T ss_pred ecCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee----cccc
Confidence 345679999999999999999999999986643 466777777766533 34455 5765
No 250
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.01 E-value=1.8e+02 Score=34.24 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=45.0
Q ss_pred ecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 16 LHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 16 ~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
+.|...|.+.-+..++++.++|+..|+++.+-|.. .++...++.|+++|+.|...
T Consensus 88 ~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 88 VGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKKAGAHVQGT 142 (592)
T ss_pred cccccccchhhHHHHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHHcCCEEEEE
Confidence 34555677778889999999999999998776653 57999999999999987755
No 251
>PRK10426 alpha-glucosidase; Provisional
Probab=21.93 E-value=2e+02 Score=34.15 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=47.8
Q ss_pred HhhHHHHHHHHHHcCCCEEEEec-cCCCCCCC----CCceeecch----hhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYV-PWNLHEPK----PGKLVFSGI----ADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv-~W~~hEp~----~G~~df~~~----~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
.+..++.++++|+.||.+=.+++ .|...... ...+||+++ -|.+++++..++.|++|++-.=|+++.
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~ 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC
Confidence 45678999999999987665554 36532221 112344443 388999999999999999998888764
No 252
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.84 E-value=36 Score=33.60 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=33.5
Q ss_pred HHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 32 RAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 32 ~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
-+.++|++.+-+-- ..---.--|||-..-+|..|.++|++|||.+-|.
T Consensus 139 vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 139 VAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred HHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 46678888654411 1122234578877788999999999999987665
No 253
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=21.57 E-value=1.5e+02 Score=34.48 Aligned_cols=63 Identities=17% Similarity=0.101 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCce---------eecchhhHHHHHHHHHHcCceEEecCCCcccc
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKL---------VFSGIADLVSFLKLCQKLDLLVMLRPGPYICA 89 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~---------df~~~~dl~~fl~~a~~~gL~VilrpgPyi~a 89 (634)
.+.|+-+|++|+++|-+-=+=-..++.-|-+ .|.-..|+.++|+.+++.||++|+..-|=-|+
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~ 114 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRS 114 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCC
Confidence 6789999999999998743333333333322 23335699999999999999999997654444
No 254
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=21.08 E-value=2.5e+02 Score=29.36 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCceEEecCCCcccceecCCCCcccccccCCCeeeccCCHHHHHHHHHHHH
Q 006713 65 LVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFPAWLLAKKPALKLRSSDRAYLQLVERWWG 125 (634)
Q Consensus 65 l~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg~P~Wl~~~~p~~~~R~~~~~y~~~~~~~~~ 125 (634)
..+++..|++.|-..+|-| |---||.|.|..- ++.+-+..+.=+++-++|+.
T Consensus 39 ~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F---g~~~G~r~~eGR~ef~kY~a 90 (337)
T KOG0805|consen 39 AEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF---GLAVGVRNEEGRDEFRKYHA 90 (337)
T ss_pred HHHHHHHHhcCCceEEEee------hHhccCCCCccee---eEEEeecchhhhHHHHHHHH
Confidence 6788999999999988887 4456899999864 44444444544455555443
No 255
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.02 E-value=1.7e+02 Score=31.78 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
.++|+++.++|+..|++..+.+..+ .+.+.++.|++.|+.|..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d------------~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEAD------------VSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHH------------HHHHHHHHHHHcCCeEEE
No 256
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.97 E-value=1.2e+02 Score=31.54 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=43.9
Q ss_pred EEEEEeecCCCCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEe
Q 006713 10 RIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVML 81 (634)
Q Consensus 10 ~~~~g~~hy~r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vil 81 (634)
+.-+|.|.|....-+...++++.+|++|++-|-+.+- -..|..|.+- +.++++.|+ ++.|.+
T Consensus 59 RPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L-----~~dg~vD~~~---~~~Li~~a~--~~~vTF 120 (248)
T PRK11572 59 RPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL-----DVDGHVDMPR---MRKIMAAAG--PLAVTF 120 (248)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE-----CCCCCcCHHH---HHHHHHHhc--CCceEE
Confidence 3456888888777888899999999999998877543 1345556555 566777663 555544
No 257
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=20.86 E-value=1.5e+02 Score=30.23 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEE
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVM 80 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vi 80 (634)
.+-++.|+++|+.++-+ +.|+- -..|-++++++|.++||.|+
T Consensus 172 ~~Tv~~~~~ag~~~lav---------eAg~t---l~ld~~~~i~~Ad~~gi~i~ 213 (214)
T PF06230_consen 172 PDTVENAAEAGLAGLAV---------EAGKT---LILDREEVIALADKAGIFIV 213 (214)
T ss_pred HHHHHHHHHcCCeEEEE---------ecCcE---EEecHHHHHHHHHHcCCEEe
Confidence 45788999999999987 22222 12457999999999999875
No 258
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=20.77 E-value=1.3e+02 Score=30.87 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=41.5
Q ss_pred CCCHhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 20 RILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 20 r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
+.....-++.|+.++++||++|++- .|.-.-+- --..++|+.|.++|+.|+-.-|
T Consensus 86 a~~~~kvdeyl~e~~~lGfe~iEIS---------~G~i~m~~-eek~~lIe~a~d~Gf~vlsEvG 140 (258)
T COG1809 86 AYSQDKVDEYLNEAKELGFEAIEIS---------NGTIPMST-EEKCRLIERAVDEGFMVLSEVG 140 (258)
T ss_pred ehhcccHHHHHHHHHHcCccEEEec---------CCeeecch-HHHHHHHHHHHhcccEEehhhc
Confidence 5556778899999999999999982 23222221 1278999999999999998855
No 259
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=20.73 E-value=2.2e+02 Score=29.45 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCce-EEecCCCcccc
Q 006713 23 PQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL-VMLRPGPYICA 89 (634)
Q Consensus 23 ~~~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~-VilrpgPyi~a 89 (634)
.+...+.++++|++|+ -|+.+| +|. .+.++.|++.|-. |=|-+|||..+
T Consensus 112 ~~~l~~~i~~L~~~gI-rVSLFi-----dP~------------~~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 112 FDKLKPAIARLKDAGI-RVSLFI-----DPD------------PEQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHHCCC-EEEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 4556778889999999 677755 666 6778999999985 77899999765
No 260
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=1.2e+02 Score=30.88 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=62.1
Q ss_pred CCceeecchhhHHHHHHHHHHcCceEEecCCCcccceecCCC-----------CcccccccCC----Ceeec---cCCHH
Q 006713 54 PGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGG-----------FPAWLLAKKP----ALKLR---SSDRA 115 (634)
Q Consensus 54 ~G~~df~~~~dl~~fl~~a~~~gL~VilrpgPyi~aEw~~Gg-----------~P~Wl~~~~p----~~~~R---~~~~~ 115 (634)
.+.|+..-+.+++++|+-|+..-=. |+|.+|..|-.... +=.|.-+.-- ++.+. .....
T Consensus 74 ~~~~~v~~n~aF~~Vi~~CA~~~~~---r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gdeLvGGlYGvalG~~F~GESM 150 (221)
T COG2360 74 QSPYRVRVNYAFAAVIEGCAATRPP---RDGTWINDEIREAYHKLHEMGHAHSVEVWQGDELVGGLYGVALGRAFFGESM 150 (221)
T ss_pred cCCeEEEechhHHHHHHHHhccCCC---CCCcccCHHHHHHHHHHHHhccceeEEEeeCCeeehhhhhhhhcceeechhh
Confidence 4556666677889999999864322 77877776543221 2234332100 00000 00111
Q ss_pred H---HHHHHHHHHHHHHHhccccccCCCcEEEEccccCc----CCCC-CcHHHHHHHHH
Q 006713 116 Y---LQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEF----GSYG-DDKEYLHHLVT 166 (634)
Q Consensus 116 y---~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEy----g~~~-~~~~y~~~l~~ 166 (634)
| .++.+-.+-.+++++.. .|+.+|=.|+.||. |.+. .+++|.+.|++
T Consensus 151 Fsr~~nASKialv~lv~~L~~----~g~~LiD~Q~~n~HL~~~GA~~ipr~~y~~~L~~ 205 (221)
T COG2360 151 FSRATNASKIALVHLVEHLRR----HGFVLIDCQVLNEHLASLGAYEIPRKEYLNYLRR 205 (221)
T ss_pred hhcCCCchHHHHHHHHHHHHh----cCceEEeeecCCHHHHhcCCeecCHHHHHHHHHH
Confidence 1 12334445556666654 48899999999996 5554 78899999998
No 261
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=20.35 E-value=1.2e+02 Score=32.66 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCce
Q 006713 25 HWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLL 78 (634)
Q Consensus 25 ~W~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~ 78 (634)
.|++.+++++..|+ +|++.-+=-.+|..|+.| .|+...+++|.+.||-
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGis 491 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGIS 491 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccc
Confidence 58999999999998 578877888899999988 4689999999999983
No 262
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.33 E-value=75 Score=33.29 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecC
Q 006713 29 RLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRP 83 (634)
Q Consensus 29 ~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrp 83 (634)
.-+++|+.|-+.|-+-|.|..-|++-.+=.... +++|..+|+.++|..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~neqk~a~---ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINEQKLAY---IERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhHHHHHH---HHHHHHHhhhcCCceeEee
Confidence 457899999999999999999999433333333 8999999999999988885
No 263
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=20.20 E-value=1.1e+02 Score=34.58 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCEEEEecc-CC---CCCCCCCceeecchhhHHHHHHHHHHcCceEEec
Q 006713 27 EDRLLRAKALGLNTIQTYVP-WN---LHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLR 82 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~-W~---~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilr 82 (634)
++.|++||++|++.|.+.+- -+ +..-.+| .+ ..++.+.++.|+++|+.|.+-
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~ 342 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGT 342 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEE
Confidence 57789999999999888542 11 0011122 12 235789999999999986654
No 264
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=20.14 E-value=8.9e+02 Score=24.28 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCCCCCCceeec-chhhHHHHHHHHHHcCceEEecC------CCcccceecCC-----
Q 006713 27 EDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFS-GIADLVSFLKLCQKLDLLVMLRP------GPYICAEWDLG----- 94 (634)
Q Consensus 27 ~~~l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~-~~~dl~~fl~~a~~~gL~Vilrp------gPyi~aEw~~G----- 94 (634)
++.++.|+++|++++.+ -+.-.|+ |..-|.+.++..++.|+..+-.- .||.-=|....
T Consensus 67 ~~~~~~L~~~G~d~~tl----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~i 136 (239)
T cd07381 67 PEVADALKAAGFDVVSL----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFL 136 (239)
T ss_pred HHHHHHHHHhCCCEEEc----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEE
Q ss_pred CCcccccccCCCeeecc--CCHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccCcCCCCCcHHHHHHHHHHHHHhc
Q 006713 95 GFPAWLLAKKPALKLRS--SDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLHHLVTLARAHL 172 (634)
Q Consensus 95 g~P~Wl~~~~p~~~~R~--~~~~y~~~~~~~~~~l~~~l~~~~~~~ggpII~~QvENEyg~~~~~~~y~~~l~~~~~~~~ 172 (634)
|+-.........-.... ....-.+.++++++++-++ +.. -|+..+...||.. ....+.+.+++.+.+ .
T Consensus 137 g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~------vIv~~H~G~e~~~--~p~~~~~~la~~l~~-~ 206 (239)
T cd07381 137 AYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADI------VIVSLHWGVEYSY--YPTPEQRELARALID-A 206 (239)
T ss_pred EEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCE------EEEEecCcccCCC--CCCHHHHHHHHHHHH-C
Q ss_pred CCceEE
Q 006713 173 GKDIIL 178 (634)
Q Consensus 173 G~~vpl 178 (634)
|+|+.+
T Consensus 207 G~D~Ii 212 (239)
T cd07381 207 GADLVI 212 (239)
T ss_pred CCCEEE
No 265
>PRK14565 triosephosphate isomerase; Provisional
Probab=20.07 E-value=2.1e+02 Score=29.56 Aligned_cols=49 Identities=12% Similarity=0.052 Sum_probs=33.0
Q ss_pred HHHHHHcCCCEEEEeccCCCCCCCCCceeecchhhHHHHHHHHHHcCceEEecCC
Q 006713 30 LLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPG 84 (634)
Q Consensus 30 l~~~k~~G~N~V~~yv~W~~hEp~~G~~df~~~~dl~~fl~~a~~~gL~Vilrpg 84 (634)
..++|++|++.|-+ ++-|.+ -.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~vii----GHSERR-~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL----GHSERR-STFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 46889999999888 444544 333222 12233334889999999999976
No 266
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=20.05 E-value=2.2e+02 Score=30.07 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=48.3
Q ss_pred EeeE-EEEEeecCC-CCCHhhHHHHHHHHHHcCCCEEEEeccCCC-CCC--------CCCceeecchhhHHHHHHHHHHc
Q 006713 7 EPFR-IIGGDLHYF-RILPQHWEDRLLRAKALGLNTIQTYVPWNL-HEP--------KPGKLVFSGIADLVSFLKLCQKL 75 (634)
Q Consensus 7 ~~~~-~~~g~~hy~-r~p~~~W~~~l~~~k~~G~N~V~~yv~W~~-hEp--------~~G~~df~~~~dl~~fl~~a~~~ 75 (634)
++++ +..|.-+.. |||.++|.+.++.+++.|+..|= .+.. .|. ....-+..|..+|.+++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl---~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKL---PWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEE---eCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 3444 345555654 59999999999999888876543 2221 111 01124556666788888877777
Q ss_pred CceEEecCCC
Q 006713 76 DLLVMLRPGP 85 (634)
Q Consensus 76 gL~VilrpgP 85 (634)
.+.|=...||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 7777666665
Done!