BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006717
(634 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 147/272 (54%), Gaps = 14/272 (5%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F +F + YL+ S +L+LE+ L V+S P FRAEK + +H E +E E A+
Sbjct: 174 FKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAW 233
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
L D MK ++ ++ + LE K++E R D+T + + F +I+Y EA
Sbjct: 234 MDLWDIMKVEEELVSYMVQRTLELRKKEIEMF--RDDLTTLKNTEP----PFPRISYDEA 287
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLN-DDG 542
+ L+ +EWG L A+ L +E + RP VY YPK +K FY++ + +D
Sbjct: 288 IDILQSKG-----VNVEWGDDLGADEERVLTEE-FDRPFFVYGYPKHIKAFYMKEDPNDP 341
Query: 543 NTVAAFDMVVPKG-GTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSG 601
V A DM+ P+G G +I GSQ E+ D L RI E G+ + YEWYLDLRR+G+V HSG
Sbjct: 342 RKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSG 401
Query: 602 FSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633
F G + +V + L +R A FPR+ + Y
Sbjct: 402 FGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 134/273 (49%), Gaps = 14/273 (5%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F+ D+F Q++LT S +L+LE+ LG+V+ +RAEK + +H AE VE E F
Sbjct: 171 FNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPF 230
Query: 424 SQLEDAMKCADDYFKFLCKWIL--EDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYT 481
L+D M+ ++ +L E+ K LE ++ + F ++ Y
Sbjct: 231 ITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPP---------ERPFLRMEYK 281
Query: 482 EAVKAL-EKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLND 540
+A+K L E E F +G + ++ D I K P+++ +P +K FY++ +
Sbjct: 282 DAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINK-PILLNRFPSEIKAFYMQRDA 340
Query: 541 DGNTVA-AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKH 599
NT+ + D+++P G ++ GS + D L+ K + + + Y WYLD R +GT H
Sbjct: 341 QDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPH 400
Query: 600 SGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKA 632
G+ G + + + T +RD +PR +G+
Sbjct: 401 GGYGLGLERFICWLTNTNHIRDVCLYPRFVGRC 433
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 134/273 (49%), Gaps = 14/273 (5%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F+ D+F Q++LT S +L+LE+ LG+V+ +RAEK + +H AE VE E F
Sbjct: 173 FNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPF 232
Query: 424 SQLEDAMKCADDYFKFLCKWIL--EDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYT 481
L+D M+ ++ +L E+ K LE ++ + F ++ Y
Sbjct: 233 ITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPP---------ERPFLRMEYK 283
Query: 482 EAVKAL-EKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLND 540
+A+K L E E F +G + ++ D I K P+++ +P +K FY++ +
Sbjct: 284 DAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTINK-PILLNRFPSEIKAFYMQRDA 342
Query: 541 DGNTVA-AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKH 599
NT+ + D+++P G ++ GS + D L+ K + + + Y WYLD R +GT H
Sbjct: 343 KDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPH 402
Query: 600 SGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKA 632
G+ G + + + T +RD +PR +G+
Sbjct: 403 GGYGLGLERFICWLTNTNHIRDVCLYPRFVGRC 435
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 152/329 (46%), Gaps = 30/329 (9%)
Query: 312 SNKVEELKRSE-----SNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSE 366
+N+ +L+R E R ++ AV+D N + E + A + + F
Sbjct: 122 NNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFI---EIHTPKIIATATEGGTELFPM 178
Query: 367 DFFSRQTYLTVSGRLHLE-SYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF-S 424
+F +L S +L+ E A L VY P FRAE+ +++H E +++E+AF
Sbjct: 179 KYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE 238
Query: 425 QLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAV 484
E+ M + ++ E +K+L+ ++ ++ + F +++Y +A+
Sbjct: 239 DEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL---------PFPRVSYDKAL 289
Query: 485 KALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKR---PV-IVYNYPKAVKPFYVRLND 540
+ L + ++I WG + E L + + P+ +Y YP KPFY+ D
Sbjct: 290 EILGDLGKEI-----PWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYD 344
Query: 541 DGNTVA-AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKH 599
+ + AFD+ +G + +G Q E R D+L +IKE GL E +E+YL R+G H
Sbjct: 345 NKPEICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPH 403
Query: 600 SGFSFGFDLMVLFTTGLTDVRDAIPFPRS 628
GF G + ++ L ++R+ I FPR
Sbjct: 404 GGFGLGAERLIKQMLDLPNIREVILFPRD 432
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 140 FLQVSDGSCVASLQVVVESTLVSPSKIRPIGT-----CLMVEGVLKQPSVQGKHAVELKV 194
FL + D + +Q+ V P + I + VEGV+ + + K E+
Sbjct: 36 FLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNF-TPKAKLGFEILP 92
Query: 195 EKILHIGTVDHDKY--PLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQ 252
EKI+ + + P + + +D ++ R V ++ +IRSS+ A FF
Sbjct: 93 EKIVVLNRAETPLPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFH 152
Query: 253 NHGFLYVQVPVITTTDSEGFSEKFQVTTL-FDKREKEGPKTAKDI 296
+GF+ + P I T +EG +E F + D E P+ K+I
Sbjct: 153 ENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQLYKEI 197
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 151/329 (45%), Gaps = 30/329 (9%)
Query: 312 SNKVEELKRSE-----SNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSE 366
N+ +L+R E R ++ AV+D N + E + A + + F
Sbjct: 122 DNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFI---EIHTPKIIATATEGGTELFPM 178
Query: 367 DFFSRQTYLTVSGRLHLE-SYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF-S 424
+F +L S +L+ + A L VY P FRAE+ +++H E +++E+AF
Sbjct: 179 KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE 238
Query: 425 QLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAV 484
E+ M + ++ E +K+L+ ++ ++ + F +++Y +A+
Sbjct: 239 DEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL---------PFPRVSYDKAL 289
Query: 485 KALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKR---PV-IVYNYPKAVKPFYVRLND 540
+ L + ++I WG + E L + + P+ +Y YP KPFY+ D
Sbjct: 290 EILGDLGKEI-----PWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYD 344
Query: 541 DGNTVA-AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKH 599
+ + AFD+ +G + +G Q E R D+L +IKE GL E +E+YL R+G H
Sbjct: 345 NKPEICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPH 403
Query: 600 SGFSFGFDLMVLFTTGLTDVRDAIPFPRS 628
GF G + ++ L ++R+ I FPR
Sbjct: 404 GGFGLGAERLIKQMLDLPNIREVILFPRD 432
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 140 FLQVSDGSCVASLQVVVESTLVSPSKIRPIGT-----CLMVEGVLKQPSVQGKHAVELKV 194
FL + D + +Q+ V P + I + VEGV+ + + K E+
Sbjct: 36 FLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNF-TPKAKLGFEILP 92
Query: 195 EKILHIGTVDHDKY--PLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQ 252
EKI+ + + P + + +D D+ R V ++ +IRSS+ A FF
Sbjct: 93 EKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFH 152
Query: 253 NHGFLYVQVPVITTTDSEGFSEKF 276
+GF+ + P I T +EG +E F
Sbjct: 153 ENGFIEIHTPKIIATATEGGTELF 176
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 127/270 (47%), Gaps = 11/270 (4%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F +F+ YLT S +L+LES +LG + +RAE+ + +H AE L +E E+ F
Sbjct: 195 FKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPF 254
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
ED + +D +C I + + + K ++ + + F+++TY +A
Sbjct: 255 ISFEDLLNHLED---LVCTVIDNVMAVHGDKIRK------MNPHLKLPTRPFKRMTYADA 305
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYV-RLNDDG 542
+K + E+G ++ + + DEI P+ + ++P +K FY+ ++
Sbjct: 306 IKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHP 364
Query: 543 NTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGF 602
+ + D+++P G ++ GS D L K GL + Y WY R++G+ H G+
Sbjct: 365 DLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGY 424
Query: 603 SFGFDLMVLFTTGLTDVRDAIPFPRSLGKA 632
G + +V++ G +R +PR L +
Sbjct: 425 GLGVERLVMWLLGEDHIRKVCLYPRYLERC 454
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 10/151 (6%)
Query: 137 STVFLQVSDGSCVASLQVVVESTLVSPSKIRPI---------GTCLMVEGVLKQPSVQGK 187
+ +F+++ DGS V+ L P K++ + G G P +
Sbjct: 48 TLIFVELRDGSGYCQC-VIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADI 106
Query: 188 HAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHAT 247
+E++V + IG D + K + + H R+ V+++RS +
Sbjct: 107 LNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166
Query: 248 HTFFQNHGFLYVQVPVITTTDSEGFSEKFQV 278
++ ++ F +Q P I T EG S F++
Sbjct: 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL 197
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 130/261 (49%), Gaps = 16/261 (6%)
Query: 368 FFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLE 427
+F ++ +L S +L+ E A + V+ P +RAE+ ++ H AE + ++ E+AF+
Sbjct: 177 YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYN 236
Query: 428 DAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKAL 487
D M+ + + K I E+ ++L+ ++ I +++ YTEA++ L
Sbjct: 237 DVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKI---------PIKRLKYTEAIEIL 287
Query: 488 EKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVA- 546
I ++G + L L +E+ + + ++P +PFY + + ++
Sbjct: 288 RSKGYNI-----KFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENPELSE 342
Query: 547 AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGF 606
+FD++ K +++GS + ++L +K+ GL E +E++L +G H+GF G
Sbjct: 343 SFDLIY-KFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGL 401
Query: 607 DLMVLFTTGLTDVRDAIPFPR 627
+++ TG+ V++ +PFPR
Sbjct: 402 ARLMVMLTGIQSVKEIVPFPR 422
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 123/273 (45%), Gaps = 30/273 (10%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F D+F ++ YL S +L+ + VY P +R E+ +S+H E L ++ E+ F
Sbjct: 164 FGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223
Query: 424 -SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFE----KI 478
+ ED M+ + + + L ++ RL SF ++
Sbjct: 224 IADEEDLMRLEEALLAEMLEEALNTAGDEI-------------RLLGATWPSFPQDIPRL 270
Query: 479 TYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRP----VIVYNYPKAVKPF 534
T+ EA + L++ E G L+ E L + +R + V YP++V+PF
Sbjct: 271 THAEAKRILKE------ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPF 324
Query: 535 YVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRH 594
Y +DG T +FD++ +G + +G Q R + L +K G+ E + YL++ ++
Sbjct: 325 YTYPEEDGTT-RSFDLLF-RGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKY 382
Query: 595 GTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
G H GF+ G + + GL +VR A FPR
Sbjct: 383 GMPPHGGFAIGAERLTQKLLGLPNVRYARAFPR 415
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 131/280 (46%), Gaps = 37/280 (13%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGN---VYSFGPRFRAEKKESSKHAAEM--LMVE 418
F +F R+ YL S +L+ + +G+ V+ GP FRAE + +H E L +E
Sbjct: 283 FEVKYFDRKAYLAQSPQLYKQ--MAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIE 340
Query: 419 TEIAFSQLEDAMKCAD---DYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSF 475
EI +E+ +C D F F+ I + +L+ + K+ + +I F
Sbjct: 341 MEI----VENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYP------FEDLIYRPF 390
Query: 476 EKITYTEAVKALEKVTEKI-----FET--KLEWGVALTAEHLSYLADEIYKRPVIVYNYP 528
++TY EA++ L E I F T +++ G + A++ + + Y I+ +P
Sbjct: 391 LRLTYKEAIEMLRASGETIGDYDDFTTPQEVKLGELIKAKYNT----DFY----ILDKFP 442
Query: 529 KAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEW 587
A++PFY + DD N ++D+ V +G + +G+Q + L R E G+ +
Sbjct: 443 AAIRPFYTMPDIDDPNYSNSYDVFV-RGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKD 501
Query: 588 YLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
Y++ R G+ H+G G + + + G+ ++R FPR
Sbjct: 502 YIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPR 541
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKR 285
RT T ++ RI+S+ F + F+ + P + SEG S F+V FD++
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV-KYFDRK 291
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 25/290 (8%)
Query: 350 KLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESS 408
KLL APS V F +F + YL S + + + A VY GP FRAE +
Sbjct: 207 KLLGAPSEGGSSV-FEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTH 265
Query: 409 KHAAEMLMVETEIAFSQ-LEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRL 467
+H E ++ E+AF + + + + F F+ + + + ++E V K+ ++
Sbjct: 266 RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQY---PVEEF 322
Query: 468 QSVISSSFEKITYTEAVKALEKVTEKI--FETKLEWGVALTAEHLSYLA----DEIYKRP 521
+ ++TY E ++ L ++I FE L+ E+ +L D+
Sbjct: 323 KLPKDGKMVRLTYKEGIEMLRAAGKEIGDFED-------LSTENEKFLGKLVRDKYDTDF 375
Query: 522 VIVYNYPKAVKPFYVRLNDDGNT--VAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELG 579
I+ +P ++PFY + D N ++D + +G +++G+Q +L R+K G
Sbjct: 376 YILDKFPLEIRPFYT-MPDPANPKYSNSYDFFM-RGEEILSGAQRIHDHALLQERMKAHG 433
Query: 580 LPREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
L E + Y D +G H+G G + +V+F L ++R A FPR
Sbjct: 434 LSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 483
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 25/290 (8%)
Query: 350 KLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESS 408
KLL APS V F +F + YL S + + + A VY GP FRAE +
Sbjct: 204 KLLGAPSEGGSSV-FEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTH 262
Query: 409 KHAAEMLMVETEIAFSQ-LEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRL 467
+H E ++ E+AF + + + + F F+ + + + ++E V K+ ++
Sbjct: 263 RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQY---PVEEF 319
Query: 468 QSVISSSFEKITYTEAVKALEKVTEKI--FETKLEWGVALTAEHLSYLA----DEIYKRP 521
+ ++TY E ++ L ++I FE L+ E+ +L D+
Sbjct: 320 KLPKDGKMVRLTYKEGIEMLRAAGKEIGDFED-------LSTENEKFLGKLVRDKYDTDF 372
Query: 522 VIVYNYPKAVKPFYVRLNDDGNT--VAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELG 579
I+ +P ++PFY + D N ++D + +G +++G+Q +L R+K G
Sbjct: 373 YILDKFPLEIRPFYT-MPDPANPKYSNSYDFFM-RGEEILSGAQRIHDHALLQERMKAHG 430
Query: 580 LPREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
L E + Y D +G H+G G + +V+F L ++R A FPR
Sbjct: 431 LSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 480
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 543 NTVA-AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGL----PREQYEWYLDLRRHGTV 597
N VA A+DMV+ G V GS DM T LG+ RE++ + LD ++GT
Sbjct: 468 NAVANAYDMVI-NGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTP 526
Query: 598 KHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKA 632
H+G +FG D + + TG ++RD I FP++ A
Sbjct: 527 PHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAA 561
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 543 NTVA-AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGL----PREQYEWYLDLRRHGTV 597
N VA A+DMV+ G V GS DM T LG+ RE++ + LD ++GT
Sbjct: 468 NAVANAYDMVI-NGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTP 526
Query: 598 KHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKA 632
H+G +FG D + + TG ++RD I FP++ A
Sbjct: 527 PHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAA 561
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 112/272 (41%), Gaps = 54/272 (19%)
Query: 367 DFFSRQTYLTVSGRLHLE-SYACALGNVYSFGPRFRAE--KKESSKHAAEMLMVETEIAF 423
+ + + LT S LH + + A L ++ P R E +K+ +HA E ++ E+
Sbjct: 64 EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 123
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
+++ED M+ + L + K E+ + T FE Y+E
Sbjct: 124 AKMEDIMRLIERLVYGLFR-------KAEEWTGREFPKT----------KRFEVFEYSEV 166
Query: 484 VKAL---EKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLND 540
++ EK ++++ E P + N P+ FY R D
Sbjct: 167 LEEFGSDEKASQEMEE------------------------PFWIINIPRE---FYDREVD 199
Query: 541 DGNTVAAFDMVVPKG-GTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKH 599
+D+++P G G V +G + E + + +I++ GL + + YL++ + G +K
Sbjct: 200 --GFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKP 257
Query: 600 S-GFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630
S G G + +V F G + + PFPR G
Sbjct: 258 SAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 289
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 113/280 (40%), Gaps = 41/280 (14%)
Query: 374 YLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKC 432
Y+ ++ LHL+ L VY G FR E S++H E M+E A++ D MK
Sbjct: 225 YMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGI-STRHNPEFTMLELYEAYADFRDIMKL 283
Query: 433 ADDYFKFLCKWILEDCSKDLEFVSKRIDMT-------CIDRLQSVISSSFEKITYTEAVK 485
++ + +L + +++ +D+T +D ++ + F + E +
Sbjct: 284 TENLIAHIATEVL--GTTKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEAR 341
Query: 486 ALEKVTEKIFETKLEWGVALTAEHLSY--LADEIYKR--------PVIVYNYPKAVKPFY 535
L K E GV + A H+++ + +E +++ P +Y +P + P
Sbjct: 342 ELAK----------EHGVEV-APHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA 390
Query: 536 VRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQY--------EW 587
+ DD F++ + ++ + ID R +E REQ E
Sbjct: 391 KKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQ-RQRFEEQLKEREQGNDEAHEMDED 449
Query: 588 YLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
+L+ +G G G D +V+ T +RD + FP+
Sbjct: 450 FLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQ 489
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 48/269 (17%)
Query: 367 DFFSRQTYLTVSGRLHLE-SYACALGNVYSFGPRFRAE--KKESSKHAAEMLMVETEIAF 423
D + + LT S LH + + A L ++ P R E +K+ +H+ E ++ EI
Sbjct: 64 DVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIEG 123
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
++++D M+ ++ L + E + EF R F+ Y +
Sbjct: 124 AKMKDVMRLIEELIYGLFRKAEEWTGR--EFPRAR---------------HFKVYDYKDI 166
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGN 543
++ E+G + E S +E P + N P+ FY R ++
Sbjct: 167 LE--------------EFG---SDEKASMEMEE----PFWIVNIPRE---FYDR--EENG 200
Query: 544 TVAAFDMVVPKG-GTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHS-G 601
+D+++P G G V +G + E + + +I+ GL + + YL++ R G +K S G
Sbjct: 201 VWKNYDLILPYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLKPSAG 260
Query: 602 FSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630
G + +V F G + + PFPR G
Sbjct: 261 AGIGVERLVRFIVGAKHIAEVQPFPRVPG 289
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 108/278 (38%), Gaps = 38/278 (13%)
Query: 374 YLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKC 432
YL ++ L+L+ V+ FR E S +H E M+E +A++ +D ++
Sbjct: 234 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYKDLIEL 292
Query: 433 ADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVK------- 485
+ F+ L + IL ++ + +D FEK+T EA+K
Sbjct: 293 TESLFRTLAQDIL--GKTEVTYGDVTLD----------FGKPFEKLTMREAIKKYRPETD 340
Query: 486 --------ALEKVTEKI-FETKLEWGVA-LTAEHLSYLADEIYKRPVIVYNYPKAVKPFY 535
+ + + E I + WG+ + E +A+ +P + YP V P
Sbjct: 341 MADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLA 400
Query: 536 VRLNDDGNTVAAFDMVVP-----KGGTVITGSQNEERIDMLNTRIKELGLPREQY--EWY 588
R + + F+ + G + + ++++ + + K+ G + E Y
Sbjct: 401 RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDY 460
Query: 589 LDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFP 626
+ HG +G G D MV+ T +RD I FP
Sbjct: 461 VTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFP 498
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 42/280 (15%)
Query: 374 YLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKC 432
YL ++ L+L+ V+ FR E S +H E M+E +A++ D ++
Sbjct: 234 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIEL 292
Query: 433 ADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVK------- 485
+ F+ L + +L + + + D FEK+T EA+K
Sbjct: 293 TESLFRTLAQEVL--GTTKVTYGEHVFD----------FGKPFEKLTMREAIKKYRPETD 340
Query: 486 --------ALEKVTEKI-FETKLEWGVA-LTAEHLSYLADEIYKRPVIVYNYPKAVKPFY 535
A + + E I + WG+ + E +A+ +P + YP V P
Sbjct: 341 MADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLA 400
Query: 536 VRLNDDGNTVAAFDMVVPKGGTVITG-----SQNEERIDMLNTRI--KELGLPREQY--E 586
R + + F+ + GG I + E++ + ++ K G + E
Sbjct: 401 RRNDVNPEITDRFEFFI--GGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE 458
Query: 587 WYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFP 626
Y+ +G +G G D M++ T +RD I FP
Sbjct: 459 DYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 539 NDDGNTVA-AFDMVVPKGGTVITGSQNEERIDMLNTRI-KELGL----PREQYEWYLDLR 592
D G A A+D+V+ G + G L R+ + LG+ RE++ ++L+
Sbjct: 458 KDPGRVRALAYDLVL--NGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEAL 515
Query: 593 RHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRS 628
+G H G ++G D ++ TG +R+ I FP++
Sbjct: 516 EYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 523 IVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPR 582
++Y PK + + L +GN + GG++ + +R +L T +KE
Sbjct: 475 LLYTEPKKARSQHYDLVLNGNEIG--------GGSIRIHNAELQRY-ILATLLKE---DV 522
Query: 583 EQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629
+ L +G H G + G D ++ TG +RD I FP+S
Sbjct: 523 KMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSF 569
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 583 EQYEWYLDLRRHGTVK---HSGFSFGFDLMVLFTTGLTDVRD 621
++YE Y D R+ T K SGFSFGF + +F G++ D
Sbjct: 178 KEYESYSDFERNVTEKMASKSGFSFGFKIPGIFELGISSQSD 219
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 276 FQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDL 335
+++ + F + E +G KDI+ L L +IKE +N +EE + + + A + + DL
Sbjct: 705 YELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL 764
Query: 336 R 336
R
Sbjct: 765 R 765
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 276 FQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDL 335
+++ + F + E +G KDI+ L L +IKE +N +EE + + + A + + DL
Sbjct: 705 YELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL 764
Query: 336 R 336
R
Sbjct: 765 R 765
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 513 LADEIYKRPVIVYNYPKAV----KPFYVRLNDDGNTVAAFDMVVPKGGT 557
L +++ P+I N P+ V KP + + G+ A D VV + GT
Sbjct: 104 LGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGT 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,594,332
Number of Sequences: 62578
Number of extensions: 647489
Number of successful extensions: 1929
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1876
Number of HSP's gapped (non-prelim): 69
length of query: 634
length of database: 14,973,337
effective HSP length: 105
effective length of query: 529
effective length of database: 8,402,647
effective search space: 4445000263
effective search space used: 4445000263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)