Query 006717
Match_columns 634
No_of_seqs 363 out of 1926
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02532 asparagine-tRNA synth 100.0 4E-149 8E-154 1248.0 44.0 616 11-634 14-633 (633)
2 PLN02221 asparaginyl-tRNA synt 100.0 3E-129 7E-134 1084.0 48.3 537 23-633 28-571 (572)
3 KOG0554 Asparaginyl-tRNA synth 100.0 6E-126 1E-130 989.9 30.7 441 30-634 5-446 (446)
4 PLN02603 asparaginyl-tRNA synt 100.0 1E-120 3E-125 1014.8 42.6 474 24-634 86-565 (565)
5 COG0017 AsnS Aspartyl/asparagi 100.0 4E-120 9E-125 972.8 40.6 396 137-633 33-434 (435)
6 PTZ00425 asparagine-tRNA ligas 100.0 2E-117 4E-122 988.6 39.8 473 136-634 99-586 (586)
7 TIGR00457 asnS asparaginyl-tRN 100.0 3E-109 7E-114 909.2 42.8 417 136-633 32-452 (453)
8 PRK03932 asnC asparaginyl-tRNA 100.0 3E-106 6E-111 885.5 43.8 413 137-633 33-449 (450)
9 TIGR00458 aspS_arch aspartyl-t 100.0 5E-101 1E-105 839.4 41.8 391 135-633 27-427 (428)
10 PTZ00401 aspartyl-tRNA synthet 100.0 5E-101 1E-105 856.6 39.9 442 91-633 50-549 (550)
11 PRK05159 aspC aspartyl-tRNA sy 100.0 3E-100 6E-105 835.8 39.8 391 136-633 32-436 (437)
12 PLN02850 aspartate-tRNA ligase 100.0 3E-100 6E-105 850.1 39.9 437 92-633 54-529 (530)
13 TIGR00499 lysS_bact lysyl-tRNA 100.0 4.2E-94 9.1E-99 796.3 38.5 403 116-630 52-494 (496)
14 PRK12445 lysyl-tRNA synthetase 100.0 3.8E-93 8.2E-98 789.2 41.3 402 118-630 66-503 (505)
15 PRK00484 lysS lysyl-tRNA synth 100.0 7.6E-93 1.6E-97 785.9 38.3 404 117-631 54-490 (491)
16 PLN02502 lysyl-tRNA synthetase 100.0 5.4E-91 1.2E-95 776.7 38.6 407 112-630 103-551 (553)
17 KOG0556 Aspartyl-tRNA syntheta 100.0 1.9E-91 4.1E-96 730.2 29.8 442 87-633 51-532 (533)
18 PTZ00385 lysyl-tRNA synthetase 100.0 2.7E-88 5.9E-93 760.5 37.8 414 117-631 107-565 (659)
19 PTZ00417 lysine-tRNA ligase; P 100.0 2.8E-87 6.1E-92 749.5 36.8 411 117-630 132-583 (585)
20 PRK02983 lysS lysyl-tRNA synth 100.0 6.3E-87 1.4E-91 791.7 41.5 408 117-631 651-1093(1094)
21 TIGR00459 aspS_bact aspartyl-t 100.0 7.5E-86 1.6E-90 737.8 34.9 380 136-630 31-555 (583)
22 KOG0555 Asparaginyl-tRNA synth 100.0 3.6E-85 7.8E-90 680.8 27.0 441 13-633 94-544 (545)
23 COG1190 LysU Lysyl-tRNA synthe 100.0 9.6E-85 2.1E-89 703.0 30.8 399 119-630 63-500 (502)
24 cd00776 AsxRS_core Asx tRNA sy 100.0 9.7E-85 2.1E-89 688.2 28.9 319 215-630 2-322 (322)
25 PRK00476 aspS aspartyl-tRNA sy 100.0 3.5E-82 7.7E-87 712.0 37.7 380 137-630 34-560 (588)
26 PLN02903 aminoacyl-tRNA ligase 100.0 5.5E-82 1.2E-86 709.9 38.9 383 135-630 87-623 (652)
27 PRK06462 asparagine synthetase 100.0 2.1E-82 4.5E-87 673.6 28.2 319 215-633 8-334 (335)
28 PRK12820 bifunctional aspartyl 100.0 7.7E-81 1.7E-85 706.5 37.0 382 135-630 33-576 (706)
29 COG0173 AspS Aspartyl-tRNA syn 100.0 2.5E-80 5.4E-85 671.8 33.3 384 135-630 30-558 (585)
30 PF00152 tRNA-synt_2: tRNA syn 100.0 2.7E-81 6E-86 664.0 23.9 316 216-629 1-334 (335)
31 KOG1885 Lysyl-tRNA synthetase 100.0 7.4E-80 1.6E-84 652.5 18.6 429 92-629 77-555 (560)
32 cd00775 LysRS_core Lys_tRNA sy 100.0 5.5E-73 1.2E-77 600.3 26.9 299 230-629 1-328 (329)
33 TIGR00462 genX lysyl-tRNA synt 100.0 1.3E-70 2.8E-75 576.5 26.6 277 237-625 1-304 (304)
34 cd00669 Asp_Lys_Asn_RS_core As 100.0 9.9E-71 2.1E-75 568.3 25.2 262 237-629 1-268 (269)
35 KOG2411 Aspartyl-tRNA syntheta 100.0 4E-67 8.7E-72 558.1 29.2 381 137-630 64-599 (628)
36 cd00777 AspRS_core Asp tRNA sy 100.0 3.5E-65 7.5E-70 529.8 24.2 265 237-629 1-279 (280)
37 PRK09350 poxB regulator PoxA; 100.0 8.3E-63 1.8E-67 517.9 27.3 276 234-622 2-306 (306)
38 COG2269 Truncated, possibly in 100.0 3.4E-48 7.3E-53 392.8 17.8 277 235-628 14-320 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.8 5.5E-18 1.2E-22 158.2 12.7 92 137-232 31-134 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.7 2.9E-17 6.3E-22 146.7 10.6 99 119-226 1-103 (103)
41 cd04322 LysRS_N LysRS_N: N-ter 99.7 4.3E-17 9.3E-22 146.8 9.6 99 119-228 1-108 (108)
42 cd04316 ND_PkAspRS_like_N ND_P 99.6 1.1E-14 2.4E-19 131.2 12.8 73 137-213 29-106 (108)
43 cd04318 EcAsnRS_like_N EcAsnRS 99.5 9E-14 1.9E-18 119.0 9.5 80 119-202 1-82 (82)
44 PRK09537 pylS pyrolysyl-tRNA s 99.5 7.1E-14 1.5E-18 152.2 10.9 133 207-425 169-316 (417)
45 cd04320 AspRS_cyto_N AspRS_cyt 99.5 1.2E-13 2.6E-18 123.1 9.8 88 119-212 1-100 (102)
46 cd04321 ScAspRS_mt_like_N ScAs 99.5 3E-13 6.6E-18 117.2 9.4 65 137-202 17-86 (86)
47 cd04323 AsnRS_cyto_like_N AsnR 99.4 1E-12 2.2E-17 113.2 9.2 78 119-202 1-84 (84)
48 TIGR02367 PylS pyrrolysyl-tRNA 99.4 2.5E-12 5.3E-17 140.3 12.6 60 370-430 291-359 (453)
49 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.4 2.2E-12 4.7E-17 111.2 9.4 79 119-202 1-85 (85)
50 cd00768 class_II_aaRS-like_cor 99.4 7.5E-13 1.6E-17 129.2 6.7 57 369-426 49-112 (211)
51 PTZ00213 asparagine synthetase 99.4 3.9E-11 8.4E-16 125.7 19.5 205 391-624 93-334 (348)
52 cd00645 AsnA Asparagine synthe 99.4 4.4E-11 9.6E-16 124.0 19.2 205 391-624 82-298 (309)
53 PRK05425 asparagine synthetase 99.3 8.4E-11 1.8E-15 122.9 19.6 223 372-624 69-308 (327)
54 TIGR00669 asnA aspartate--ammo 99.2 2E-09 4.4E-14 112.5 19.7 223 373-624 67-315 (330)
55 PRK00488 pheS phenylalanyl-tRN 99.1 7.4E-10 1.6E-14 118.2 13.0 49 392-441 187-237 (339)
56 COG0016 PheS Phenylalanyl-tRNA 99.1 6.9E-10 1.5E-14 118.0 12.4 143 376-622 175-325 (335)
57 PF01409 tRNA-synt_2d: tRNA sy 99.0 9.6E-10 2.1E-14 113.3 10.9 51 390-441 102-154 (247)
58 PLN02853 Probable phenylalanyl 98.9 7.7E-09 1.7E-13 114.8 11.2 45 392-437 344-390 (492)
59 cd00773 HisRS-like_core Class 98.9 1.8E-07 3.9E-12 96.5 20.3 32 237-268 2-33 (261)
60 TIGR00442 hisS histidyl-tRNA s 98.6 1.3E-06 2.8E-11 95.3 18.1 37 232-268 9-45 (397)
61 PTZ00326 phenylalanyl-tRNA syn 98.6 5.3E-08 1.1E-12 108.6 7.0 34 391-425 358-391 (494)
62 TIGR00468 pheS phenylalanyl-tR 98.6 7.2E-07 1.6E-11 94.3 14.0 45 391-436 151-197 (294)
63 PF01336 tRNA_anti-codon: OB-f 98.5 9.1E-08 2E-12 79.0 4.6 73 120-200 1-75 (75)
64 PRK04172 pheS phenylalanyl-tRN 98.5 1.5E-06 3.2E-11 97.9 15.3 33 391-424 351-383 (489)
65 TIGR00470 sepS O-phosphoseryl- 98.4 8.4E-07 1.8E-11 97.8 8.4 50 391-440 208-259 (533)
66 PLN02788 phenylalanine-tRNA sy 98.4 7.4E-06 1.6E-10 89.8 15.5 40 383-423 140-179 (402)
67 PF00587 tRNA-synt_2b: tRNA sy 98.2 3.5E-06 7.6E-11 81.6 8.1 71 371-442 55-136 (173)
68 cd00496 PheRS_alpha_core Pheny 98.2 7.9E-06 1.7E-10 82.6 9.5 64 373-438 60-129 (218)
69 CHL00201 syh histidine-tRNA sy 98.1 0.00013 2.7E-09 81.1 18.7 38 231-268 12-49 (430)
70 cd00670 Gly_His_Pro_Ser_Thr_tR 98.1 1.1E-05 2.3E-10 81.2 8.6 32 237-268 2-33 (235)
71 TIGR00469 pheS_mito phenylalan 98.1 3.3E-05 7.2E-10 85.7 12.8 59 545-622 278-338 (460)
72 cd00779 ProRS_core_prok Prolyl 98.0 2.3E-05 4.9E-10 81.2 9.3 48 392-439 115-164 (255)
73 cd00772 ProRS_core Prolyl-tRNA 97.9 9E-05 1.9E-09 77.2 11.4 48 392-439 121-170 (264)
74 PRK09194 prolyl-tRNA synthetas 97.8 0.00013 2.8E-09 83.7 11.8 35 233-267 43-77 (565)
75 PRK12421 ATP phosphoribosyltra 97.8 0.0012 2.5E-08 72.7 18.7 38 231-268 15-52 (392)
76 cd00778 ProRS_core_arch_euk Pr 97.8 8E-05 1.7E-09 77.3 8.5 49 392-440 121-171 (261)
77 PRK00037 hisS histidyl-tRNA sy 97.7 0.00018 4E-09 78.8 10.5 36 232-267 13-48 (412)
78 TIGR00409 proS_fam_II prolyl-t 97.7 0.00026 5.6E-09 81.4 11.7 35 233-267 43-77 (568)
79 cd00774 GlyRS-like_core Glycyl 97.7 9.6E-05 2.1E-09 76.5 7.4 38 235-278 30-69 (254)
80 cd00770 SerRS_core Seryl-tRNA 97.6 0.00013 2.8E-09 77.3 7.8 35 234-268 49-83 (297)
81 PRK08661 prolyl-tRNA synthetas 97.6 0.00015 3.2E-09 81.7 8.7 121 234-438 41-180 (477)
82 cd00771 ThrRS_core Threonyl-tR 97.6 0.00025 5.3E-09 75.1 8.7 35 234-268 27-61 (298)
83 TIGR00414 serS seryl-tRNA synt 97.5 0.00035 7.7E-09 77.5 9.5 117 234-441 170-308 (418)
84 PRK12305 thrS threonyl-tRNA sy 97.5 0.00041 9E-09 79.6 10.1 37 232-268 201-237 (575)
85 PRK12325 prolyl-tRNA synthetas 97.5 0.00058 1.3E-08 76.2 10.7 49 391-439 130-180 (439)
86 PRK00413 thrS threonyl-tRNA sy 97.5 0.00051 1.1E-08 79.7 10.6 37 232-268 265-301 (638)
87 PLN02908 threonyl-tRNA synthet 97.5 0.00043 9.3E-09 81.3 10.0 50 392-442 404-456 (686)
88 TIGR00408 proS_fam_I prolyl-tR 97.4 0.00056 1.2E-08 77.0 10.2 49 392-440 127-177 (472)
89 PLN02837 threonine-tRNA ligase 97.3 0.00044 9.6E-09 80.2 7.1 50 392-442 331-383 (614)
90 TIGR00418 thrS threonyl-tRNA s 97.3 0.0015 3.2E-08 74.9 11.2 35 233-267 196-230 (563)
91 PRK12293 hisZ ATP phosphoribos 97.2 0.0017 3.6E-08 68.5 10.4 37 232-268 14-50 (281)
92 PRK05431 seryl-tRNA synthetase 97.2 0.001 2.2E-08 74.0 8.9 71 371-442 223-307 (425)
93 PRK12444 threonyl-tRNA synthet 97.2 0.0014 3E-08 76.4 10.2 49 392-441 357-408 (639)
94 PRK14799 thrS threonyl-tRNA sy 97.2 0.0013 2.9E-08 75.2 9.2 49 392-442 251-303 (545)
95 TIGR00443 hisZ_biosyn_reg ATP 97.1 0.0022 4.8E-08 68.2 9.8 35 234-268 5-39 (314)
96 PRK12292 hisZ ATP phosphoribos 97.1 0.0026 5.6E-08 69.9 10.3 36 232-267 12-47 (391)
97 PRK03991 threonyl-tRNA synthet 97.0 0.0012 2.7E-08 76.5 7.4 51 392-442 310-364 (613)
98 PLN02530 histidine-tRNA ligase 97.0 0.0032 7E-08 71.2 10.3 36 232-267 79-114 (487)
99 PF13393 tRNA-synt_His: Histid 97.0 0.0033 7.1E-08 66.3 9.6 36 233-268 6-41 (311)
100 COG2502 AsnA Asparagine synthe 96.9 0.11 2.4E-06 54.0 19.3 206 391-624 90-315 (330)
101 PLN02972 Histidyl-tRNA synthet 96.9 0.005 1.1E-07 72.7 10.4 37 231-267 335-371 (763)
102 PRK12420 histidyl-tRNA synthet 96.7 0.0069 1.5E-07 67.2 9.6 38 231-268 12-49 (423)
103 PLN02678 seryl-tRNA synthetase 96.5 0.0046 1E-07 69.2 6.9 34 235-268 172-205 (448)
104 PRK04173 glycyl-tRNA synthetas 96.5 0.0067 1.5E-07 68.2 8.1 50 392-443 188-240 (456)
105 PLN02320 seryl-tRNA synthetase 96.5 0.0069 1.5E-07 68.6 8.1 50 392-442 315-370 (502)
106 cd04489 ExoVII_LU_OBF ExoVII_L 96.4 0.03 6.4E-07 46.9 9.3 73 120-198 2-75 (78)
107 cd04487 RecJ_OBF2_like RecJ_OB 96.2 0.044 9.5E-07 46.5 9.3 72 120-200 1-73 (73)
108 COG0124 HisS Histidyl-tRNA syn 95.9 0.035 7.5E-07 62.0 9.7 36 232-267 13-48 (429)
109 PRK12295 hisZ ATP phosphoribos 95.8 0.038 8.1E-07 60.7 9.3 45 391-439 83-132 (373)
110 PRK00960 seryl-tRNA synthetase 95.5 0.018 4E-07 65.5 5.7 47 392-439 337-386 (517)
111 KOG2784 Phenylalanyl-tRNA synt 95.5 0.0051 1.1E-07 66.2 0.9 52 386-438 326-382 (483)
112 cd04482 RPA2_OBF_like RPA2_OBF 95.0 0.19 4E-06 44.4 9.3 74 120-203 1-77 (91)
113 PF13742 tRNA_anti_2: OB-fold 94.7 0.14 3.1E-06 45.7 7.7 75 118-198 22-98 (99)
114 COG0172 SerS Seryl-tRNA synthe 94.6 0.085 1.8E-06 58.8 7.3 36 234-269 171-206 (429)
115 PF00458 WHEP-TRS: WHEP-TRS do 94.3 0.072 1.6E-06 43.2 4.5 43 305-347 2-44 (56)
116 PF10451 Stn1: Telomere regula 94.2 0.12 2.6E-06 54.1 7.0 75 117-201 66-148 (256)
117 cd03524 RPA2_OBF_family RPA2_O 94.0 0.26 5.7E-06 39.0 7.2 70 122-197 2-73 (75)
118 COG0442 ProS Prolyl-tRNA synth 93.9 0.21 4.6E-06 56.8 8.7 48 392-439 131-180 (500)
119 TIGR00415 serS_MJ seryl-tRNA s 93.8 0.21 4.5E-06 56.9 8.5 69 372-441 309-388 (520)
120 COG0441 ThrS Threonyl-tRNA syn 93.5 0.11 2.4E-06 60.2 5.8 51 391-442 302-355 (589)
121 cd04492 YhaM_OBF_like YhaM_OBF 93.5 0.5 1.1E-05 39.4 8.3 60 137-202 19-78 (83)
122 cd04483 hOBFC1_like hOBFC1_lik 93.3 0.65 1.4E-05 41.1 9.0 68 122-198 2-90 (92)
123 cd04478 RPA2_DBD_D RPA2_DBD_D: 93.2 0.81 1.8E-05 39.8 9.5 74 120-202 2-79 (95)
124 COG1107 Archaea-specific RecJ- 93.1 0.11 2.3E-06 59.4 4.6 83 109-200 205-288 (715)
125 PRK12294 hisZ ATP phosphoribos 92.7 0.53 1.2E-05 49.7 9.1 33 236-268 6-38 (272)
126 cd04485 DnaE_OBF DnaE_OBF: A s 92.0 0.2 4.3E-06 41.3 3.9 58 137-200 19-77 (84)
127 COG4085 Predicted RNA-binding 91.7 0.57 1.2E-05 46.9 7.3 83 107-196 41-129 (204)
128 COG3111 Periplasmic protein wi 91.1 1.2 2.7E-05 41.6 8.3 72 116-200 56-127 (128)
129 cd00939 MetRS_RNA MetRS_RNA bi 91.1 0.31 6.6E-06 37.9 3.7 40 306-345 3-42 (45)
130 KOG2324 Prolyl-tRNA synthetase 90.3 1.2 2.7E-05 48.6 8.7 32 236-267 51-82 (457)
131 PF03100 CcmE: CcmE; InterPro 90.0 2 4.4E-05 40.4 9.1 91 102-208 35-127 (131)
132 KOG2509 Seryl-tRNA synthetase 89.4 0.38 8.3E-06 53.4 4.2 34 234-267 182-215 (455)
133 cd00938 HisRS_RNA HisRS_RNA bi 89.3 0.62 1.3E-05 36.2 4.0 38 304-341 3-40 (45)
134 cd04490 PolII_SU_OBF PolII_SU_ 88.7 2.2 4.7E-05 36.7 7.6 69 120-198 2-73 (79)
135 COG1570 XseA Exonuclease VII, 88.0 1.9 4.1E-05 48.4 8.4 78 118-201 24-102 (440)
136 PRK12366 replication factor A; 87.9 3.5 7.5E-05 48.6 11.0 96 105-202 278-382 (637)
137 cd04488 RecG_wedge_OBF RecG_we 87.5 2.4 5.3E-05 34.1 6.9 59 122-182 2-61 (75)
138 PRK07373 DNA polymerase III su 86.9 1.7 3.6E-05 49.2 7.3 58 137-200 302-360 (449)
139 COG5235 RFA2 Single-stranded D 85.8 4.7 0.0001 41.1 9.0 55 138-198 84-141 (258)
140 KOG1936 Histidyl-tRNA syntheta 85.6 1.5 3.3E-05 48.9 5.9 111 235-423 72-184 (518)
141 PRK05672 dnaE2 error-prone DNA 85.6 1.7 3.6E-05 54.0 7.0 61 135-202 972-1033(1046)
142 PRK14699 replication factor A; 85.4 7.3 0.00016 44.5 11.5 84 118-204 177-267 (484)
143 PF04076 BOF: Bacterial OB fol 84.2 3.9 8.5E-05 37.2 7.0 71 115-198 32-102 (103)
144 KOG2783 Phenylalanyl-tRNA synt 83.9 0.56 1.2E-05 51.4 1.7 53 371-424 131-184 (436)
145 PRK13150 cytochrome c-type bio 83.4 7.3 0.00016 38.2 9.0 98 96-209 30-135 (159)
146 PRK13254 cytochrome c-type bio 83.0 7.6 0.00016 37.6 8.9 97 96-209 30-128 (148)
147 PRK09616 pheT phenylalanyl-tRN 82.6 4.5 9.7E-05 46.8 8.5 46 392-438 440-487 (552)
148 PRK06920 dnaE DNA polymerase I 82.1 2.8 6.1E-05 52.3 7.0 59 137-201 965-1024(1107)
149 PRK07374 dnaE DNA polymerase I 81.6 3.2 7E-05 52.1 7.3 58 137-200 1022-1080(1170)
150 PRK13159 cytochrome c-type bio 81.2 8.1 0.00018 37.7 8.3 97 96-209 30-128 (155)
151 PRK13165 cytochrome c-type bio 80.9 9.5 0.00021 37.4 8.8 98 96-209 30-135 (160)
152 PRK00286 xseA exodeoxyribonucl 80.5 7.9 0.00017 43.3 9.3 80 117-202 23-103 (438)
153 COG3705 HisZ ATP phosphoribosy 80.5 3.7 8.1E-05 45.6 6.5 35 235-269 15-49 (390)
154 cd04491 SoSSB_OBF SoSSB_OBF: A 80.1 14 0.00031 31.2 8.8 55 135-197 21-76 (82)
155 TIGR00156 conserved hypothetic 79.9 8.5 0.00018 36.4 7.8 70 116-198 56-125 (126)
156 PRK10053 hypothetical protein; 79.1 8.9 0.00019 36.4 7.7 71 115-198 59-129 (130)
157 TIGR00237 xseA exodeoxyribonuc 78.2 9.2 0.0002 43.0 8.9 78 118-201 18-96 (432)
158 PRK07080 hypothetical protein; 77.5 1.9 4.2E-05 46.4 3.2 50 392-442 153-203 (317)
159 PRK06826 dnaE DNA polymerase I 77.4 3.1 6.7E-05 52.2 5.3 79 117-200 991-1072(1151)
160 PRK05673 dnaE DNA polymerase I 77.0 4.6 0.0001 50.7 6.6 60 137-202 999-1059(1135)
161 PRK15491 replication factor A; 77.0 9.4 0.0002 42.2 8.4 92 106-204 57-157 (374)
162 cd04474 RPA1_DBD_A RPA1_DBD_A: 75.3 8.6 0.00019 34.5 6.3 77 118-196 10-98 (104)
163 PRK06461 single-stranded DNA-b 74.0 28 0.0006 32.6 9.6 76 118-202 15-100 (129)
164 COG0013 AlaS Alanyl-tRNA synth 73.3 11 0.00025 45.8 8.3 47 391-438 63-115 (879)
165 cd04319 PhAsnRS_like_N PhAsnRS 71.3 2.8 6.1E-05 37.4 2.1 15 47-61 1-15 (103)
166 PRK12366 replication factor A; 71.1 23 0.00049 42.0 10.1 90 106-201 63-159 (637)
167 cd04322 LysRS_N LysRS_N: N-ter 71.0 2.8 6E-05 37.7 2.1 15 47-61 1-15 (108)
168 cd04100 Asp_Lys_Asn_RS_N Asp_L 70.6 2.7 5.8E-05 36.0 1.8 15 47-61 1-15 (85)
169 COG2024 Phenylalanyl-tRNA synt 70.3 2.6 5.7E-05 46.3 2.0 37 590-627 315-352 (536)
170 PRK14699 replication factor A; 69.8 20 0.00044 41.0 9.0 88 117-211 67-163 (484)
171 PRK13480 3'-5' exoribonuclease 69.6 13 0.00029 40.2 7.1 63 136-204 32-94 (314)
172 PRK07279 dnaE DNA polymerase I 69.0 8 0.00017 48.0 6.0 56 137-198 907-963 (1034)
173 cd04323 AsnRS_cyto_like_N AsnR 68.9 3.4 7.4E-05 35.4 2.1 15 47-61 1-15 (84)
174 PRK14894 glycyl-tRNA synthetas 68.7 3.6 7.8E-05 47.1 2.7 35 392-427 167-203 (539)
175 PF12869 tRNA_anti-like: tRNA_ 67.8 6.4 0.00014 36.7 3.9 45 137-181 85-131 (144)
176 cd04318 EcAsnRS_like_N EcAsnRS 67.7 3.9 8.4E-05 34.8 2.2 14 48-61 2-15 (82)
177 PF08661 Rep_fac-A_3: Replicat 64.2 15 0.00032 33.3 5.3 59 113-182 14-72 (109)
178 cd01200 WHEPGMRS_RNA EPRS-like 62.9 8.7 0.00019 28.7 3.0 38 307-344 3-40 (42)
179 COG0124 HisS Histidyl-tRNA syn 61.4 6.9 0.00015 44.1 3.2 47 391-438 102-152 (429)
180 COG1571 Predicted DNA-binding 61.3 19 0.0004 40.5 6.4 74 118-202 267-343 (421)
181 PRK07459 single-stranded DNA-b 61.2 24 0.00052 32.8 6.3 52 152-203 46-104 (121)
182 PRK12420 histidyl-tRNA synthet 60.7 9.1 0.0002 42.6 4.0 46 392-438 101-150 (423)
183 PRK05813 single-stranded DNA-b 60.6 1.1E+02 0.0023 31.6 11.4 84 117-203 109-210 (219)
184 cd04320 AspRS_cyto_N AspRS_cyt 60.5 6 0.00013 35.1 2.1 15 47-61 1-15 (102)
185 COG0423 GRS1 Glycyl-tRNA synth 60.1 3.9 8.4E-05 46.8 1.0 31 238-268 41-73 (558)
186 cd04484 polC_OBF polC_OBF: A s 59.5 61 0.0013 27.9 8.1 75 120-198 2-80 (82)
187 PLN02502 lysyl-tRNA synthetase 58.9 10 0.00022 44.1 4.0 38 24-61 84-124 (553)
188 cd00935 GlyRS_RNA GlyRS_RNA bi 58.6 16 0.00034 28.6 3.9 44 303-346 3-46 (51)
189 PLN02850 aspartate-tRNA ligase 58.3 8.2 0.00018 44.6 3.2 29 27-61 69-97 (530)
190 PLN02734 glycyl-tRNA synthetas 58.2 4.1 8.8E-05 48.3 0.7 31 238-268 110-141 (684)
191 PRK12292 hisZ ATP phosphoribos 57.8 11 0.00025 41.5 4.1 46 392-438 100-149 (391)
192 PRK02801 primosomal replicatio 57.5 49 0.0011 29.7 7.4 48 152-200 50-100 (101)
193 PRK08763 single-stranded DNA-b 56.0 32 0.0007 33.8 6.4 40 164-203 67-111 (164)
194 PRK15491 replication factor A; 54.3 54 0.0012 36.4 8.6 83 118-204 177-267 (374)
195 TIGR00389 glyS_dimeric glycyl- 54.0 4.3 9.4E-05 47.0 0.1 32 237-268 37-69 (551)
196 PRK07211 replication factor A; 52.9 53 0.0012 37.7 8.4 75 118-198 64-147 (485)
197 cd00936 WEPRS_RNA WEPRS_RNA bi 52.6 17 0.00036 28.5 3.1 40 306-345 3-42 (50)
198 PRK10917 ATP-dependent DNA hel 52.3 42 0.00091 39.9 7.9 77 116-198 58-135 (681)
199 TIGR00443 hisZ_biosyn_reg ATP 51.9 19 0.00042 38.4 4.6 34 391-425 88-121 (314)
200 cd00673 AlaRS_core Alanyl-tRNA 49.3 61 0.0013 33.8 7.4 48 390-438 55-108 (232)
201 PTZ00401 aspartyl-tRNA synthet 48.4 15 0.00032 42.8 3.2 30 27-61 65-94 (550)
202 cd04479 RPA3 RPA3: A subfamily 48.3 75 0.0016 28.5 7.1 69 114-202 12-80 (101)
203 TIGR00617 rpa1 replication fac 47.7 67 0.0015 37.9 8.5 97 105-204 179-286 (608)
204 TIGR00499 lysS_bact lysyl-tRNA 47.2 20 0.00044 41.1 4.1 37 25-61 29-69 (496)
205 PRK12295 hisZ ATP phosphoribos 46.5 23 0.00049 39.2 4.2 27 242-268 9-35 (373)
206 COG2332 CcmE Cytochrome c-type 45.5 80 0.0017 30.8 7.1 96 98-209 32-129 (153)
207 PRK07211 replication factor A; 44.9 88 0.0019 36.0 8.6 92 106-204 161-260 (485)
208 PRK07218 replication factor A; 43.1 1.2E+02 0.0025 34.4 9.1 83 108-201 60-147 (423)
209 PRK07217 replication factor A; 40.6 2.3E+02 0.0049 30.9 10.3 85 117-210 82-167 (311)
210 cd00496 PheRS_alpha_core Pheny 39.6 22 0.00047 36.0 2.5 26 242-267 5-30 (218)
211 PF02091 tRNA-synt_2e: Glycyl- 38.5 23 0.00049 37.5 2.4 57 544-624 121-177 (284)
212 PRK00484 lysS lysyl-tRNA synth 37.8 34 0.00074 39.2 4.0 38 24-61 29-70 (491)
213 PRK00036 primosomal replicatio 37.2 59 0.0013 30.0 4.6 50 152-202 49-98 (107)
214 PRK06752 single-stranded DNA-b 37.0 68 0.0015 29.1 5.1 52 152-203 49-106 (112)
215 PRK09348 glyQ glycyl-tRNA synt 36.1 24 0.00053 37.1 2.2 57 544-624 126-182 (283)
216 cd00733 GlyRS_alpha_core Class 35.9 25 0.00054 37.0 2.2 56 544-623 122-177 (279)
217 TIGR00643 recG ATP-dependent D 35.5 1.6E+02 0.0034 34.8 9.1 43 137-182 53-96 (630)
218 PRK07275 single-stranded DNA-b 35.5 46 0.001 32.6 4.0 52 152-203 49-106 (162)
219 PF15072 DUF4539: Domain of un 35.4 1.3E+02 0.0029 26.5 6.4 59 121-184 6-65 (86)
220 PRK06253 O-phosphoseryl-tRNA s 34.7 36 0.00077 39.4 3.4 33 598-630 317-351 (529)
221 cd04496 SSB_OBF SSB_OBF: A sub 34.3 67 0.0015 27.5 4.5 49 151-199 45-99 (100)
222 KOG2298 Glycyl-tRNA synthetase 34.1 11 0.00024 42.7 -0.6 31 238-268 47-78 (599)
223 PRK08486 single-stranded DNA-b 33.9 72 0.0016 31.9 5.1 40 164-203 64-108 (182)
224 PRK06253 O-phosphoseryl-tRNA s 33.4 41 0.0009 38.9 3.7 49 392-440 210-260 (529)
225 KOG3108 Single-stranded DNA-bi 33.3 1.4E+02 0.0031 31.7 7.3 74 118-200 69-145 (265)
226 PRK05813 single-stranded DNA-b 32.8 1E+02 0.0022 31.8 6.1 51 152-203 49-103 (219)
227 KOG1035 eIF-2alpha kinase GCN2 32.7 92 0.002 39.6 6.6 47 390-439 1004-1054(1351)
228 PRK06863 single-stranded DNA-b 32.2 82 0.0018 31.2 5.1 52 152-203 54-111 (168)
229 PF00436 SSB: Single-strand bi 31.9 79 0.0017 27.4 4.5 49 152-200 50-104 (104)
230 PRK06642 single-stranded DNA-b 30.5 1.4E+02 0.0031 28.8 6.4 52 152-203 55-117 (152)
231 cd04486 YhcR_OBF_like YhcR_OBF 30.1 84 0.0018 26.9 4.2 33 165-201 43-76 (78)
232 PRK06751 single-stranded DNA-b 30.0 95 0.0021 30.9 5.2 52 152-203 49-106 (173)
233 PLN02972 Histidyl-tRNA synthet 29.9 38 0.00082 41.0 2.8 47 391-438 418-469 (763)
234 PTZ00417 lysine-tRNA ligase; P 29.9 54 0.0012 38.5 4.0 36 26-61 110-148 (585)
235 TIGR00621 ssb single stranded 29.2 72 0.0016 31.1 4.2 53 152-204 53-111 (164)
236 TIGR00388 glyQ glycyl-tRNA syn 29.2 35 0.00075 36.2 2.0 58 544-625 123-180 (293)
237 PRK12293 hisZ ATP phosphoribos 28.7 35 0.00077 36.1 2.0 40 392-438 97-137 (281)
238 PRK07135 dnaE DNA polymerase I 27.3 73 0.0016 39.7 4.6 45 137-183 918-962 (973)
239 PRK06958 single-stranded DNA-b 26.5 1.1E+02 0.0025 30.6 5.0 52 152-203 54-111 (182)
240 PRK06293 single-stranded DNA-b 26.0 1.3E+02 0.0027 29.7 5.1 52 152-203 45-102 (161)
241 PF12857 TOBE_3: TOBE-like dom 25.8 1.5E+02 0.0034 23.7 4.8 51 121-176 6-56 (58)
242 COG3689 Predicted membrane pro 25.7 4.3E+02 0.0093 28.2 9.2 40 165-204 222-263 (271)
243 PRK07218 replication factor A; 25.3 4.4E+02 0.0095 29.9 9.9 77 118-203 173-254 (423)
244 PRK00037 hisS histidyl-tRNA sy 23.4 70 0.0015 35.2 3.3 34 391-425 99-132 (412)
245 TIGR03683 A-tRNA_syn_arch alan 23.3 32 0.00068 42.5 0.5 51 373-424 90-150 (902)
246 PRK08402 replication factor A; 23.1 3.3E+02 0.0071 30.2 8.2 76 118-198 73-157 (355)
247 PRK06386 replication factor A; 23.0 4.9E+02 0.011 28.9 9.6 76 118-204 118-198 (358)
248 TIGR00418 thrS threonyl-tRNA s 23.0 40 0.00088 38.9 1.3 68 371-439 255-333 (563)
249 PLN02734 glycyl-tRNA synthetas 22.8 98 0.0021 37.1 4.4 47 301-347 9-55 (684)
250 COG0752 GlyQ Glycyl-tRNA synth 22.4 54 0.0012 34.5 1.9 55 545-624 128-183 (298)
251 PF13567 DUF4131: Domain of un 22.4 3.7E+02 0.0081 24.4 7.5 63 117-183 75-145 (176)
252 PF15490 Ten1_2: Telomere-capp 22.3 6.5E+02 0.014 23.5 11.0 77 113-202 17-98 (118)
253 PTZ00385 lysyl-tRNA synthetase 21.5 1.1E+02 0.0023 36.7 4.3 39 23-61 82-123 (659)
254 cd00769 PheRS_beta_core Phenyl 21.0 98 0.0021 30.6 3.5 45 392-440 80-137 (198)
255 PRK13902 alaS alanyl-tRNA synt 21.0 38 0.00083 41.8 0.6 51 373-424 93-153 (900)
256 cd05694 S1_Rrp5_repeat_hs2_sc2 20.9 2.4E+02 0.0051 23.7 5.3 33 139-176 20-53 (74)
257 PRK08182 single-stranded DNA-b 20.9 1.9E+02 0.004 27.9 5.2 51 152-202 56-112 (148)
258 PF15513 DUF4651: Domain of un 20.2 1.2E+02 0.0025 25.4 3.1 22 238-259 2-23 (62)
259 PLN02530 histidine-tRNA ligase 20.2 89 0.0019 35.7 3.3 33 392-425 166-198 (487)
No 1
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=3.6e-149 Score=1247.99 Aligned_cols=616 Identities=69% Similarity=1.127 Sum_probs=560.7
Q ss_pred cccccccccccccccccccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCCCCCCCCCCCCccchhhhhchhhhhccccc
Q 006717 11 TTTTATPVTLTWRYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGDAAAKSSKEKEKEKDV 90 (634)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (634)
+++|+.|||.+ +|++|+.+|+||+++|+|++++|++|+|+|||||.+.+||+++||+|++-+.+ +.++....+++
T Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 88 (633)
T PLN02532 14 GDTTASPITPS-KYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSS----AGDQSPGHKDV 88 (633)
T ss_pred CccccCcccch-hccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCC----CCCCCCCcCCc
Confidence 46788999998 99999999999999999999999999999999999999999998888743322 33456778999
Q ss_pred chhhhhhcccccceeeeeecCCCCCcccccccceeee--ccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCC
Q 006717 91 SCVEILQSRIPFFRTIIRVLGGSAGISNNVPLREKLE--ALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRP 168 (634)
Q Consensus 91 ~~~~~~qs~~~~fr~~~~v~~~~~~~~~~V~vrGRi~--~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~ 168 (634)
+|+|++|||+|+||++++|.++++. ++.||.... ..+..|+.|+++||+||||||..+||||++++..+..+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~~~L~ 165 (633)
T PLN02532 89 RCTEILQSRVPIFRSIAKVLSGGGS---TYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLTQLMA 165 (633)
T ss_pred chhHHHhhhcHHHHHHHHHHcCCCC---CCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHhhcCC
Confidence 9999999999999999999988766 233333322 11112458999999999999999999999876544446789
Q ss_pred CCcEEEEEEEEecCC-CCCCceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHH
Q 006717 169 IGTCLMVEGVLKQPS-VQGKHAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHAT 247 (634)
Q Consensus 169 ~Gs~V~V~G~l~~~~-~~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~ai 247 (634)
+|++|.|+|+|+.++ ..++|.+||++++|+|||++++.+|||+++.+++|+||++||||+|++.++++||+||.|++++
T Consensus 166 ~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~ai 245 (633)
T PLN02532 166 TGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHAT 245 (633)
T ss_pred CceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHH
Confidence 999999999999873 2457899999999999999876789999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccC-CCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHH
Q 006717 248 HTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKE-GPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNRE 326 (634)
Q Consensus 248 r~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (634)
|+||+++||+|||||+||+++||||+++|+|+|+..+..+. ..+.+...++.+.++++|+++++++.|+.+++|++|||
T Consensus 246 R~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (633)
T PLN02532 246 HTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNRE 325 (633)
T ss_pred HHHHHHCCCEEeeCCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhccccccccccccccccc
Confidence 99999999999999999999999999999999986543332 11223455677899999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCC
Q 006717 327 ALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKE 406 (634)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~ 406 (634)
++.||++||+++|+++++++++.+++++.+.+.++.+|+.+|||+++|||||||||||+|++||+|||+||||||||+++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~ 405 (633)
T PLN02532 326 ALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRID 405 (633)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCC
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHH
Q 006717 407 SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKA 486 (634)
Q Consensus 407 T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~ 486 (634)
|+||||||||||+||+|+||+|+|+++|+||++++++++++|.++|+++++.++...+++|+..++.||+||||.||+++
T Consensus 406 T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~i 485 (633)
T PLN02532 406 SARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDL 485 (633)
T ss_pred CCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888877788888888899999999999999
Q ss_pred HHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHH
Q 006717 487 LEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEE 566 (634)
Q Consensus 487 L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~ 566 (634)
|++....+|+..++||.||+++||++|++.++++|+||+|||++++||||+.++|++++++||||+|++|||+||+||||
T Consensus 486 L~~~~~~~~e~~~~~g~dL~~e~Er~L~~~~~~~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~ 565 (633)
T PLN02532 486 LKQATDKKFETKPEWGIALTTEHLSYLADEIYKKPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEE 565 (633)
T ss_pred HHHhcCCCcccccccCCccChHHHHHHHHHHcCCCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHH
Confidence 98765445667789999999999999999888999999999999999999999888999999999998889999999999
Q ss_pred hHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCCC
Q 006717 567 RIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAYN 634 (634)
Q Consensus 567 r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~~ 634 (634)
||+.|++++++.|++++.|+|||++|+||+|||||||||||||+|||||++||||||||||++|+|.|
T Consensus 566 r~e~L~~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~~ 633 (633)
T PLN02532 566 RMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKANN 633 (633)
T ss_pred HHHHHHHHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987
No 2
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=3.1e-129 Score=1083.99 Aligned_cols=537 Identities=50% Similarity=0.910 Sum_probs=488.9
Q ss_pred cccccccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCCCCCCCCCCCCccchhhhhchhhhhcccccchhhhhhccccc
Q 006717 23 RYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGDAAAKSSKEKEKEKDVSCVEILQSRIPF 102 (634)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qs~~~~ 102 (634)
.++.+++|++|+.+.+++...+|++|+|+|||+++|.+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~G----------------------------------------- 66 (572)
T PLN02221 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQG----------------------------------------- 66 (572)
T ss_pred cccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCC-----------------------------------------
Confidence 577889999999888888999999999999999999987
Q ss_pred ceeeeeecCCCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecC
Q 006717 103 FRTIIRVLGGSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQP 182 (634)
Q Consensus 103 fr~~~~v~~~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~ 182 (634)
+++++||+||||||.+.||||++++..+..+.|+.|++|.|+|+|+.+
T Consensus 67 --------------------------------k~~i~Fl~LRDgs~~g~iQvVv~~~~~~~~~~L~~ES~V~V~G~V~~~ 114 (572)
T PLN02221 67 --------------------------------KGTFAFLEVNDGSCPANLQVMVDSSLYDLSTLVATGTCVTVDGVLKVP 114 (572)
T ss_pred --------------------------------CceEEEEEEeCCcccccEEEEEcCchhhHHhcCCCceEEEEEEEEEeC
Confidence 235899999999987789999986543333468999999999999988
Q ss_pred CC--CCCceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEee
Q 006717 183 SV--QGKHAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQ 260 (634)
Q Consensus 183 ~~--~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~ 260 (634)
|. +++|.+||++++|.|||+|++.+|||+++.++.|++|+++|||+|++.++++||+||.+++++|+||+++||+|||
T Consensus 115 ~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~ 194 (572)
T PLN02221 115 PEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIH 194 (572)
T ss_pred CccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 74 3468999999999999999766899999999999999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCCCCCcceeeeccccccccCCCCcc---cccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhh
Q 006717 261 VPVITTTDSEGFSEKFQVTTLFDKREKEGPKTA---KDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRK 337 (634)
Q Consensus 261 TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (634)
||+||+++||||+++|+|+|+.......+ +.- ...+..++++++++++|+++.|.+||+|++|||++.||++||++
T Consensus 195 TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (572)
T PLN02221 195 TPIITTSDCEGAGEMFQVTTLINYTERLE-QDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKI 273 (572)
T ss_pred CCeeccccCCCCccceeeeeccccccccc-ccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhh
Confidence 99999999999999999988653211000 000 11233468999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCcccccccc
Q 006717 338 TNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMV 417 (634)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmL 417 (634)
|++.+++++++.+.+++.+.+.+..+|+.||||+++||+||||||||++++||+|||+||||||||+++|+|||||||||
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtml 353 (572)
T PLN02221 274 AKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMV 353 (572)
T ss_pred hhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCCCCcccccccce
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhc--cccc
Q 006717 418 ETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVT--EKIF 495 (634)
Q Consensus 418 E~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~--~~~f 495 (634)
|+||+|.|++|+|+++|+||++++++++++|.++++++.+.++.+.+++|+..++.||+||||.||+++|++.. +.++
T Consensus 354 E~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~~~ 433 (572)
T PLN02221 354 EPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEF 433 (572)
T ss_pred eeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhhcCCCC
Confidence 99999999999999999999999999999999999998877776777888887888999999999999998752 2234
Q ss_pred ccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHH
Q 006717 496 ETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRI 575 (634)
Q Consensus 496 ~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~ 575 (634)
+..++||.||+.++|++|++.++++|+||+|||.+++||||+.++|+.+++|||||+|+++||++|+||+|||+.|++++
T Consensus 434 ~~~~~~G~dl~~e~Er~L~~~~~~~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~~g~~R~~r~e~l~~~~ 513 (572)
T PLN02221 434 DNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRI 513 (572)
T ss_pred CCCcchhhhhhHHHHHHHHHHhcCCcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEECCHHHHHHHHHHHHHHH
Confidence 44578999999999999999877899999999999999999888888899999999987789999999999999999999
Q ss_pred HHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 576 KELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 576 ~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
++.|+++..|+|||++++||||||||||||||||+||+||.+|||||++|||++++|.
T Consensus 514 ~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~ 571 (572)
T PLN02221 514 EEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKAD 571 (572)
T ss_pred HHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999999996
No 3
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-126 Score=989.91 Aligned_cols=441 Identities=50% Similarity=0.888 Sum_probs=418.5
Q ss_pred HHHHhhcCCCCCCCCCcEEEEEEEEeecccCCCCCCCCCCCCccchhhhhchhhhhcccccchhhhhhcccccceeeeee
Q 006717 30 LKTILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGDAAAKSSKEKEKEKDVSCVEILQSRIPFFRTIIRV 109 (634)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qs~~~~fr~~~~v 109 (634)
+.+++...+.+....|+++.|+|||||+|.+|
T Consensus 5 ~~~v~~~~~~~~~~~g~~~~i~GWvKsvr~~~------------------------------------------------ 36 (446)
T KOG0554|consen 5 SLSVLSGRILGHPRAGDTISIGGWVKSVRKLK------------------------------------------------ 36 (446)
T ss_pred eeeeeccccccCCCCCCceeecchhhhccccc------------------------------------------------
Confidence 34444445566778999999999999999988
Q ss_pred cCCCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCce
Q 006717 110 LGGSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHA 189 (634)
Q Consensus 110 ~~~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~ 189 (634)
+++|++||||||.++||||+++. ..+.+.+|+||.++|.+..+. +.+|.
T Consensus 37 ---------------------------~~~Fl~i~DGs~~~~lQvVv~~~---~~q~la~Gt~i~~~g~l~~~~-~~~q~ 85 (446)
T KOG0554|consen 37 ---------------------------KVTFLDINDGSCPSPLQVVVDSE---QSQLLATGTCISAEGVLKVSK-GAKQQ 85 (446)
T ss_pred ---------------------------ceEEEEecCCCCCcceEEEechH---HhhhccccceEEEEeeEEecc-chhee
Confidence 79999999999999999999983 457899999999999999884 77899
Q ss_pred EEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC
Q 006717 190 VELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS 269 (634)
Q Consensus 190 vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~ 269 (634)
+|+.|++|.++|.+++. ||++||++++|+||+..|||.||+.++|++|+||++..|+|+||++++|++|+|||||++||
T Consensus 86 iel~~eki~~vG~v~~~-ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC 164 (446)
T KOG0554|consen 86 IELNAEKIKVVGTVDES-YPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC 164 (446)
T ss_pred eeeeeeEEEEEeecCCC-CCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC
Confidence 99999999999999965 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006717 270 EGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRD 349 (634)
Q Consensus 270 EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (634)
|||||+|+|||+.
T Consensus 165 EGaGE~F~vtt~~------------------------------------------------------------------- 177 (446)
T KOG0554|consen 165 EGAGEVFQVTTLT------------------------------------------------------------------- 177 (446)
T ss_pred CCCcceEEEEecC-------------------------------------------------------------------
Confidence 9999999999751
Q ss_pred hcccCCCcCCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCC-HHH
Q 006717 350 KLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-LED 428 (634)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~~d 428 (634)
|++++|||+|+|||||+|||+|.|+++|+|||++||+||||+|+|+|||+||||||+|+||++ ++|
T Consensus 178 -------------d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d 244 (446)
T KOG0554|consen 178 -------------DYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDD 244 (446)
T ss_pred -------------cccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChH
Q 006717 429 AMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAE 508 (634)
Q Consensus 429 lm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e 508 (634)
+|+++|.++++++++++++|.+|+++..++.+++.+++|+.+++.+|.||||+|||++|++.....|+++++||.||++|
T Consensus 245 ~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~~l~~e 324 (446)
T KOG0554|consen 245 LMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGIDLSTE 324 (446)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhcccccccCcccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999987556788999999999999
Q ss_pred HHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHH
Q 006717 509 HLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWY 588 (634)
Q Consensus 509 ~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wY 588 (634)
||+||++.+++.||||+|||+.+|||||+.|+|+++|.+|||++|++|||+||||||+| .+++++.|+.++.|+||
T Consensus 325 he~yL~~~~~~~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~----~~~l~e~g~~~~~~eWY 400 (446)
T KOG0554|consen 325 HEKYLVEECFKKPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREER----KARLKERGLTREELEWY 400 (446)
T ss_pred hHHHHHHHhcCCCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhh----HHHHHhcCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999 67789999999999999
Q ss_pred HHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCCC
Q 006717 589 LDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAYN 634 (634)
Q Consensus 589 Lda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~~ 634 (634)
||+||||.+|||||||||||++++++|.+||||||||||+|+.|++
T Consensus 401 ldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 401 LDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred hhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 9999999999999999999999999999999999999999999874
No 4
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.2e-120 Score=1014.83 Aligned_cols=474 Identities=43% Similarity=0.812 Sum_probs=428.6
Q ss_pred ccccccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCCCCCCCCCCCCccchhhhhchhhhhcccccchhhhhhcccccc
Q 006717 24 YSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGDAAAKSSKEKEKEKDVSCVEILQSRIPFF 103 (634)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qs~~~~f 103 (634)
+..++.|++++...+.+....|++|+|+|||+++|.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g------------------------------------------ 123 (565)
T PLN02603 86 FRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQS------------------------------------------ 123 (565)
T ss_pred cCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCC------------------------------------------
Confidence 34678899998655566778899999999999999876
Q ss_pred eeeeeecCCCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCC----CCCCCCcEEEEEEEE
Q 006717 104 RTIIRVLGGSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPS----KIRPIGTCLMVEGVL 179 (634)
Q Consensus 104 r~~~~v~~~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~----~~l~~Gs~V~V~G~l 179 (634)
+++|++|+|||+..+||||++.+...+. +.|++||+|.|+|+|
T Consensus 124 ---------------------------------~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~gs~V~V~G~v 170 (565)
T PLN02603 124 ---------------------------------SVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTGASVLVQGTV 170 (565)
T ss_pred ---------------------------------CeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCCCEEEEEEEE
Confidence 8999999999998899999986543321 248999999999999
Q ss_pred ecCCCCCCceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEe
Q 006717 180 KQPSVQGKHAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYV 259 (634)
Q Consensus 180 ~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV 259 (634)
+.++ +.+|.+||++++|++||+|++ +||++++.++.+++|.++|||+|++.+++++|+||.|++++|+||+++||+||
T Consensus 171 ~~~~-~~~~~~EL~v~~i~vlg~a~~-~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~~~gF~eV 248 (565)
T PLN02603 171 VSSQ-GGKQKVELKVSKIVVVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWV 248 (565)
T ss_pred EecC-CCCccEEEEEeEEEEEECCCC-CCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 9987 556889999999999999985 89999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhh
Q 006717 260 QVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTN 339 (634)
Q Consensus 260 ~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (634)
|||+||+++||||+++|.|||+.....+.
T Consensus 249 ~TPiLt~s~~EGA~e~F~Vttl~~~~~~~--------------------------------------------------- 277 (565)
T PLN02603 249 SSPIITASDCEGAGEQFCVTTLIPNSAEN--------------------------------------------------- 277 (565)
T ss_pred ECCeecccCCCccccCceeeecccccccc---------------------------------------------------
Confidence 99999999999999999999864321100
Q ss_pred hhhhhhhhhhhcccCCCc-CCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccc
Q 006717 340 ELVSHLESRDKLLQAPSV-KTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVE 418 (634)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE 418 (634)
...+....|+ +.+.+++..+|||+++||+||||||||++++||+|||+||||||||+++|+||||||||||
T Consensus 278 --------~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE 349 (565)
T PLN02603 278 --------GGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIE 349 (565)
T ss_pred --------ccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcccceEEEecceeCCCCCCccccccceeee
Confidence 0001112232 3455677889999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccc
Q 006717 419 TEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETK 498 (634)
Q Consensus 419 ~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~ 498 (634)
+||+|+|++|+|+++|++|++++++++++|.++|+++++..+.+.+++|+.++..||+||||+||+++|++. ..+|+..
T Consensus 350 ~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi~iL~~~-~~~~~~~ 428 (565)
T PLN02603 350 PELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKA-KKKFEFP 428 (565)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHHHHHHHh-ccccCCC
Confidence 999999999999999999999999999999999999998888888899988888899999999999999876 3356667
Q ss_pred cccccccChHHHHhHHhhhCC-ccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHH
Q 006717 499 LEWGVALTAEHLSYLADEIYK-RPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE 577 (634)
Q Consensus 499 ~~~G~dL~~e~Er~L~e~~~~-~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~ 577 (634)
++||.||+++||++|++.+++ +||||+|||++++||||+.++|++++++||||+|+++||+||+|||||+++|.+++++
T Consensus 429 ~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e 508 (565)
T PLN02603 429 VKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQREERLEYLEARLDE 508 (565)
T ss_pred CCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEEEecCceEecCHHHHHhhHHHHHHHHHH
Confidence 899999999999999998874 7999999999999999999988999999999999989999999999999999999999
Q ss_pred cCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCCC
Q 006717 578 LGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAYN 634 (634)
Q Consensus 578 ~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~~ 634 (634)
+|++++.|+|||++++||+|||||||||||||+||+||++||||||+|||++|+|++
T Consensus 509 ~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FPR~~g~~~~ 565 (565)
T PLN02603 509 LKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPGSAEF 565 (565)
T ss_pred cCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999985
No 5
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-120 Score=972.79 Aligned_cols=396 Identities=43% Similarity=0.781 Sum_probs=369.7
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC--C-C-CCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV--S-P-SKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLSR 212 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~--~-~-~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~k 212 (634)
+++||.||||||+ ||||++++.. + + .+.|++||+|.|+|+|++++ +++|.+||++++|+|+|.+++ +|||++
T Consensus 33 ~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~~~~L~~es~v~V~G~v~~~~-~a~~g~El~v~~i~Vl~~a~~-~~Pi~~ 108 (435)
T COG0017 33 KIIFLVLRDGSGF--IQAVVPKNKVYEELFKAKKLTLESSVVVTGIVKASP-KAPQGFELQVEKIEVLGEADP-PYPIDK 108 (435)
T ss_pred CeEEEEEEcCCcE--EEEEEECCCCcHHHhhhhcCCCccEEEEEEEEEcCC-CCCCCEEEEEEEEEEeeccCC-CCCcCc
Confidence 7999999999998 9999986421 1 2 35799999999999999998 688999999999999999975 999999
Q ss_pred CCCC-hhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCC
Q 006717 213 KRLP-MDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPK 291 (634)
Q Consensus 213 k~~~-~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~ 291 (634)
+.++ +|+|+++||||+|+++++|+||+||.|++++|+||+++||+||+||+|++++||||+++|.|
T Consensus 109 ~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v------------- 175 (435)
T COG0017 109 KEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV------------- 175 (435)
T ss_pred ccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE-------------
Confidence 9996 99999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCc
Q 006717 292 TAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSR 371 (634)
Q Consensus 292 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~ 371 (634)
+||++
T Consensus 176 ---------------------------------------------------------------------------~yf~~ 180 (435)
T COG0017 176 ---------------------------------------------------------------------------DYFDK 180 (435)
T ss_pred ---------------------------------------------------------------------------eecCc
Confidence 47999
Q ss_pred eeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccc
Q 006717 372 QTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKD 451 (634)
Q Consensus 372 ~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~d 451 (634)
++||+||||||+|+|+++|+|||+|||+||||+|||+|||+||||+|+||||+|++|+|+++|+||+++++.|+++|.++
T Consensus 181 ~a~LtqS~QLyke~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~e 260 (435)
T COG0017 181 EAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADE 260 (435)
T ss_pred ceEEecCHHHHHHHHHHHhCceEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCC
Q 006717 452 LEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAV 531 (634)
Q Consensus 452 l~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~ 531 (634)
|+++++ +...+++++ +.||+||||+||+++|++++ ++. ++||+||+++|||+|++.++..|+||||||+++
T Consensus 261 l~~l~~--~~~~l~~~~---~~pf~ritY~eAieiL~~~~---~e~-~~~GdDl~~e~Er~l~e~~~~~~vfv~~yP~~~ 331 (435)
T COG0017 261 LEFLGR--DNSELKRPE---SAPFPRITYKEAIEILEEKG---FEK-VEWGDDLGTEHERYLGEEYFKPPVFVTNYPKEI 331 (435)
T ss_pred HHHhhc--cchhhcccc---cCCccEEEHHHHHHHHHhcC---Ccc-cCCCCccCCHHHHHHHHHhCCCcEEEEeCcccc
Confidence 999976 333343322 57899999999999998653 333 899999999999999998877789999999999
Q ss_pred CCCccccCCCC-CceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHH
Q 006717 532 KPFYVRLNDDG-NTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMV 610 (634)
Q Consensus 532 kPFy~~~~~d~-~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLv 610 (634)
|||||+.++|+ +++.+|||++|+||||+|||||+|+++.|.++|++.|+|++.|+||||++|||+|||||||||+|||+
T Consensus 332 kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv 411 (435)
T COG0017 332 KPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLV 411 (435)
T ss_pred cccccccCCCCCCeEEEEeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHH
Confidence 99999988665 89999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcCccccCCCCCCCCC
Q 006717 611 LFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 611 m~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||+||++||||||||||+++||.
T Consensus 412 ~~i~gl~nIRea~pFPR~~~r~~ 434 (435)
T COG0017 412 MYILGLDNIREAIPFPRDPGRLY 434 (435)
T ss_pred HHHhCCCcceeccccCCCCCCCC
Confidence 99999999999999999999985
No 6
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=1.7e-117 Score=988.64 Aligned_cols=473 Identities=40% Similarity=0.703 Sum_probs=400.1
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCCC--CCCCCCCcEEEEEEEEecCCCC-------CCceEEEEE-----eeeEEEe
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVSP--SKIRPIGTCLMVEGVLKQPSVQ-------GKHAVELKV-----EKILHIG 201 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~--~~~l~~Gs~V~V~G~l~~~~~~-------~~q~vEL~~-----~~i~vlg 201 (634)
++++||+||||||..++|||+++....+ ...++.|+||.|+|+|+.++.. .+|.+||.+ ++++|||
T Consensus 99 ~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~ilg 178 (586)
T PTZ00425 99 GRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYG 178 (586)
T ss_pred ceEEEEEEECCCCCcceEEEECCchHHHHHHhcCCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEEe
Confidence 3699999999999888999997543222 2468999999999999987632 147799998 6999999
Q ss_pred cC-CCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeec
Q 006717 202 TV-DHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTT 280 (634)
Q Consensus 202 ~~-~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt 280 (634)
.+ ++.+||++++.++.|++|++||||+|++.++++||+||.|+.++|+||+++||+|||||+||++|||||||+|.|+|
T Consensus 179 ~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t 258 (586)
T PTZ00425 179 ENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTT 258 (586)
T ss_pred ccCCCCCCCCCCccCChhhhhhccceeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeee
Confidence 98 56689999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCC
Q 006717 281 LFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTD 360 (634)
Q Consensus 281 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (634)
+..+..+ -+..|.++. +++.. -|++++++++..+ +.+.+.......+ .+..+ ...
T Consensus 259 ~~~~~~~-----~~~~p~~~~-------~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~q~~-~~~ 313 (586)
T PTZ00425 259 LLGEDAD-----YRAIPRVNK-------KNKKG----EKREDILNTCNAN----NNNGNSSSSNAVS----SPAYP-DQY 313 (586)
T ss_pred ccccccc-----ccccccccc-------ccccc----ccccccccccccc----ccccccccccccc----ccccc-ccc
Confidence 7432100 011121111 11111 1666666555532 1122211111111 00111 113
Q ss_pred cccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHH
Q 006717 361 KVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 361 ~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l 440 (634)
..+++.+|||+++||+||||||||+|++||+|||+||||||||+++|+||||||||||+||+|+|++|+|+++|+||+++
T Consensus 314 ~~~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v 393 (586)
T PTZ00425 314 LIDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYC 393 (586)
T ss_pred cccccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCc
Q 006717 441 CKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKR 520 (634)
Q Consensus 441 ~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~ 520 (634)
++.++++|.++|++++..++.+.+++|+..+..||+||||+||+++|++.. ..++..++||.||++++|++|++.++++
T Consensus 394 ~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~-~~~~~~~~~G~dL~~e~Er~L~~~~~~~ 472 (586)
T PTZ00425 394 IGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYS-DSFEVPVKWGMDLQSEHERFVAEQIFKK 472 (586)
T ss_pred HHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhH-HhcCCCCCcccccchHHHHHHHHHhcCC
Confidence 999999999999988766666677888777788999999999999998753 2344567999999999999999987789
Q ss_pred cEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcc
Q 006717 521 PVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHS 600 (634)
Q Consensus 521 PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhg 600 (634)
||||+|||++++||||+.++|++++++||||+|++|||+|||||+|+++.|.+++++.|++++.|+|||++++||+||||
T Consensus 473 PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ike~gl~~e~~~wYLd~rryG~pPhg 552 (586)
T PTZ00425 473 PVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPHA 552 (586)
T ss_pred cEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHHHHHcCCChhHHHHHHHHhhCCCCCCc
Confidence 99999999999999999888888999999999977899999999999999999999999999999999999999999999
Q ss_pred eeeccHHHHHHHhcCCCCcCccccCCCCCCCCCC
Q 006717 601 GFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAYN 634 (634)
Q Consensus 601 GfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~~ 634 (634)
|||||||||+|||||++|||||+||||++|+|.+
T Consensus 553 GfGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 553 GFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred eEEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 9999999999999999999999999999999974
No 7
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=3e-109 Score=909.15 Aligned_cols=417 Identities=44% Similarity=0.808 Sum_probs=380.9
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCC----CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVS----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLS 211 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~ 211 (634)
|+++|++|+||+|...||||++++... ..+.|+.||+|.|+|++++++ ++++++||.++++++||+|.+..||++
T Consensus 32 ~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~-~~~~~~El~~~~i~vl~~~~~~~~P~~ 110 (453)
T TIGR00457 32 KKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVTGKVVESP-GKGQPVELQVKKIEVVGEAEPDDYPLQ 110 (453)
T ss_pred CCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEEEEEEcCC-CCCCCEEEEEeEEEEEecCCccCCCCC
Confidence 389999999999666799999876321 235699999999999999976 567999999999999999975679999
Q ss_pred CCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCC
Q 006717 212 RKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPK 291 (634)
Q Consensus 212 kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~ 291 (634)
.+.+++++++++||||+|++..+++||+||.|++++|+||+++||+||+||+|++++|||++++|.|.+..
T Consensus 111 ~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~--------- 181 (453)
T TIGR00457 111 KKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDG--------- 181 (453)
T ss_pred ccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999885320
Q ss_pred cccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCc
Q 006717 292 TAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSR 371 (634)
Q Consensus 292 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~ 371 (634)
.++..+|||+
T Consensus 182 ----------------------------------------------------------------------~~~~~~~~~~ 191 (453)
T TIGR00457 182 ----------------------------------------------------------------------IDFSQDFFGK 191 (453)
T ss_pred ----------------------------------------------------------------------cccchhccCC
Confidence 0123479999
Q ss_pred eeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccc
Q 006717 372 QTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKD 451 (634)
Q Consensus 372 ~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~d 451 (634)
++||+||||||||+|++|++|||+||||||||+++|+||||||||||+||+|+|++|+|+++|+||+++++++++++..+
T Consensus 192 ~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~ 271 (453)
T TIGR00457 192 EAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQE 271 (453)
T ss_pred ccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCC
Q 006717 452 LEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAV 531 (634)
Q Consensus 452 l~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~ 531 (634)
++++...++...+..++..+..||+||||.||+++|++. ...++....||.+|+.++|++|++.++..|+||||||.++
T Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~-~~~~~~~~~~g~~l~~~~e~~L~~~~~~~p~fIt~~P~~~ 350 (453)
T TIGR00457 272 LKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKES-DKNFEYEDFWGDDLQTEHERFLAEEYFKPPVFVTNYPKDI 350 (453)
T ss_pred HHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhc-CCCCcCCCCCCCCCCcHHHHHHHHHhCCCCEEEECCCccc
Confidence 888876666556667777778899999999999999886 3345556789999999999999999888999999999999
Q ss_pred CCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHH
Q 006717 532 KPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVL 611 (634)
Q Consensus 532 kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm 611 (634)
+||||+.++|+++++|||||+|+.+||+|||||+|+++.|.+++++.|++++.|+|||++++||+|||||||||||||+|
T Consensus 351 ~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm 430 (453)
T TIGR00457 351 KAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLA 430 (453)
T ss_pred ChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHH
Confidence 99999877788999999999975479999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcCccccCCCCCCCCC
Q 006717 612 FTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 612 ~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
|+||.+|||||++|||+++||.
T Consensus 431 ~l~g~~~Irdv~~FPr~~~~~~ 452 (453)
T TIGR00457 431 YITGLENIRDAIPFPRTPGNIN 452 (453)
T ss_pred HHhCCCcHhhhccCcCCCCCCC
Confidence 9999999999999999999996
No 8
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=3e-106 Score=885.50 Aligned_cols=413 Identities=49% Similarity=0.865 Sum_probs=373.1
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC--C--CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV--S--PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLSR 212 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~--~--~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~k 212 (634)
+++|++|+||+|. +||++..+.. . ..+.|+.||+|.|+|+++.++ .++|++||+++++++||+|. ..||++.
T Consensus 33 ~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~-~~~~~~el~~~~i~vl~~~~-~~~p~~~ 108 (450)
T PRK03932 33 KIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKKLTTGSSVIVTGTVVESP-RAGQGYELQATKIEVIGEDP-EDYPIQK 108 (450)
T ss_pred CeEEEEEECCCCc--EEEEEEcCCChHHHHHHhcCCCCcEEEEEEEEEcCC-CCCCCEEEEEEEEEEccCCC-CCCCCCc
Confidence 8999999999997 7776654321 1 235689999999999999987 45689999999999999985 4799999
Q ss_pred CCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCc
Q 006717 213 KRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKT 292 (634)
Q Consensus 213 k~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~ 292 (634)
+.+++++++++||||+|++..+++||+||.|++++|+||.++||+||+||+|++++|||++++|.|+++.+
T Consensus 109 ~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~--------- 179 (450)
T PRK03932 109 KRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDL--------- 179 (450)
T ss_pred cccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999865310
Q ss_pred ccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCce
Q 006717 293 AKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQ 372 (634)
Q Consensus 293 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~ 372 (634)
.++.+|||++
T Consensus 180 ----------------------------------------------------------------------~~~~~~~~~~ 189 (450)
T PRK03932 180 ----------------------------------------------------------------------DFSKDFFGKE 189 (450)
T ss_pred ----------------------------------------------------------------------cccccccCCC
Confidence 0234799999
Q ss_pred eeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccch
Q 006717 373 TYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDL 452 (634)
Q Consensus 373 ~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl 452 (634)
+||+||||||||++++|++|||+||||||||+++|+||||||||||||++|+|++|+|+++|+||+++++++++++.+++
T Consensus 190 ~~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i 269 (450)
T PRK03932 190 AYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDL 269 (450)
T ss_pred cccccCHHHHHHHHHhccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999998899
Q ss_pred hhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCCC
Q 006717 453 EFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVK 532 (634)
Q Consensus 453 ~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~k 532 (634)
++++...+.+.++.++.+++.||+||||.||+++|++. +..++...+||.+|+.++|++|+++++++|+||+|||.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~-~~~~~~~~~~g~~l~~~~e~~l~~~~~~~pvfI~~yP~~~~ 348 (450)
T PRK03932 270 EFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKS-GKKFEFPVEWGDDLGSEHERYLAEEHFKKPVFVTNYPKDIK 348 (450)
T ss_pred HHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHc-CCCcCCCCCcccccChHHHHHHHHHhcCCcEEEECCCcccC
Confidence 99887665555666666567899999999999999875 33344445899999999999999977789999999999999
Q ss_pred CCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHH
Q 006717 533 PFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLF 612 (634)
Q Consensus 533 PFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ 612 (634)
||||+.++++++++|||||+|+.+||+||+||+++++.+.++++++|++++.|+||+++++||||||||||||||||+||
T Consensus 349 pfy~~~~~~~~~~~~fdLl~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~ 428 (450)
T PRK03932 349 AFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAY 428 (450)
T ss_pred cccCcCCCCCCEEEEEEEEcCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHH
Confidence 99987766558999999999766899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcCccccCCCCCCCCC
Q 006717 613 TTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 613 ltg~~nIRdVi~FPr~~~~~~ 633 (634)
+||.+|||||++|||+++||.
T Consensus 429 l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 429 ITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred HhCCCcHhhhccCcCCCCCCC
Confidence 999999999999999999986
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=5.1e-101 Score=839.42 Aligned_cols=391 Identities=26% Similarity=0.465 Sum_probs=351.8
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCCC-----CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLVS-----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
+|+++|++|+||++. ||||+..+... ....|+.||+|.|+|+++.++ .+.|++||.+++++++|+|. .++|
T Consensus 27 ~g~~~Fi~lrd~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~-~~~~~~el~~~~i~vl~~~~-~~lP 102 (428)
T TIGR00458 27 LGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKE-KAPGGFEIIPTKIEVINEAK-EPLP 102 (428)
T ss_pred CCCcEEEEEEeCCee--EEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecC-CCCCcEEEEEeEEEEEecCC-CCCC
Confidence 347999999999996 99999865321 235699999999999999876 45689999999999999995 4799
Q ss_pred CCCCCC---ChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccc
Q 006717 210 LSRKRL---PMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKRE 286 (634)
Q Consensus 210 l~kk~~---~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~ 286 (634)
++.+.. ++++++++||||+|++..+++||+||.|++++|+||.++||+||+||+|++++||||+++|.|
T Consensus 103 ~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v-------- 174 (428)
T TIGR00458 103 LDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPI-------- 174 (428)
T ss_pred CCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeee--------
Confidence 887653 689999999999999999999999999999999999999999999999999999999999975
Q ss_pred cCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccc
Q 006717 287 KEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSE 366 (634)
Q Consensus 287 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (634)
T Consensus 175 -------------------------------------------------------------------------------- 174 (428)
T TIGR00458 175 -------------------------------------------------------------------------------- 174 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 006717 367 DFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWIL 445 (634)
Q Consensus 367 ~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl 445 (634)
+||++++||+||||||||+| ++|++|||+||||||||+++|+|||||||||||||+|+|++|+|+++|+||++++++++
T Consensus 175 ~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~ 254 (428)
T TIGR00458 175 TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVP 254 (428)
T ss_pred EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999986 56899999999999999999899999999999999999999999999999999999999
Q ss_pred hhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEE
Q 006717 446 EDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVY 525 (634)
Q Consensus 446 ~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVt 525 (634)
+++..++++++..+. ..+.||+||||.||+++|++.+ ....||.++..++|++|++.+ +.|+||+
T Consensus 255 ~~~~~~~~~~~~~~~---------~~~~pf~rity~eA~~~l~~~g-----~~~~~~~~l~~~~E~~l~~~~-~~p~fi~ 319 (428)
T TIGR00458 255 ERCAHQLETLEFKLE---------KPEGKFVRLTYDEAIEMANAKG-----VEIGWGEDLSTEAEKALGEEM-DGLYFIT 319 (428)
T ss_pred hcchhhhhhcccccc---------cCCCCceEEEHHHHHHHHHHcC-----CCCCCccccchHHHHHHHHHh-CCCEEEE
Confidence 998877765443221 1246999999999999987753 235789999999999998754 8899999
Q ss_pred eCCCCCCCCcccc-CCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeec
Q 006717 526 NYPKAVKPFYVRL-NDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSF 604 (634)
Q Consensus 526 dyP~~~kPFy~~~-~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGL 604 (634)
|||.+++|||++. ++|+++++|||||+| |+||+||+||+++++.|+++++++|++++.|+|||+|++|||||||||||
T Consensus 320 d~P~~~~pfy~~~~~~~p~~~~~fdl~~~-g~Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~Gi 398 (428)
T TIGR00458 320 DWPTEIRPFYTMPDEDNPEISKSFDLMYR-DLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGL 398 (428)
T ss_pred eCchhcCcccccccCCCCCEEEEEEEEeC-CeEEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceee
Confidence 9999999999754 456789999999995 89999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 605 GFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 605 GiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
|||||+||+||.+|||||++|||+++||.
T Consensus 399 GidRL~m~l~g~~~Irdv~~FPr~~~r~~ 427 (428)
T TIGR00458 399 GAERFVMFLLGLKNIREAVLFPRDRKRLT 427 (428)
T ss_pred cHHHHHHHHcCCCchheEEeccCCCCCCC
Confidence 99999999999999999999999999985
No 10
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.4e-101 Score=856.56 Aligned_cols=442 Identities=23% Similarity=0.370 Sum_probs=385.4
Q ss_pred chhhhhhcccccceeeeeecCCCCCc--ccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC--C----
Q 006717 91 SCVEILQSRIPFFRTIIRVLGGSAGI--SNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV--S---- 162 (634)
Q Consensus 91 ~~~~~~qs~~~~fr~~~~v~~~~~~~--~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~--~---- 162 (634)
--.||+||+.+..+.|.+|.+++... ++.|+|+|||+++|. +|+++|++|||+++. ||||+..+.. .
T Consensus 50 g~~~~~~~~~~~~~~~~~i~~l~~~~~~g~~V~v~Grv~~~R~---~Gk~~Fl~LRd~~~~--iQ~v~~~~~~~~~~~~~ 124 (550)
T PTZ00401 50 GAAPMVQSTTYKSRTFIPVAVLSKPELVDKTVLIRARVSTTRK---KGKMAFMVLRDGSDS--VQAMAAVEGDVPKEMID 124 (550)
T ss_pred CccccccccccCCCceEEHHHCCccccCCCEEEEEEEEEEEec---CCCeEEEEEEeCCcC--EEEEEECCCccCHHHHH
Confidence 35688999988778899999987554 688999999999998 999999999999995 9999965421 1
Q ss_pred CCCCCCCCcEEEEEEEEecCCC----CCCceEEEEEeeeEEEecCCCCCCCCCCCC-----------CChhhccccceee
Q 006717 163 PSKIRPIGTCLMVEGVLKQPSV----QGKHAVELKVEKILHIGTVDHDKYPLSRKR-----------LPMDMLRDSAHFR 227 (634)
Q Consensus 163 ~~~~l~~Gs~V~V~G~l~~~~~----~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~-----------~~~e~lr~~rhLr 227 (634)
+...|+.||+|.|+|+|+.++. ...|++||++++|.+|++|. .++|++.+. .+.++++++||||
T Consensus 125 ~~~~l~~esiV~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~Ld 203 (550)
T PTZ00401 125 FIGQIPTESIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESL-RTLPFTLEDASRKESDEGAKVNFDTRLNSRWMD 203 (550)
T ss_pred HHhcCCCCCEEEEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCC-CCCCCCcccccccccccccccChhhhhhhhhhh
Confidence 2356999999999999997531 23688999999999999996 478987543 3688999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHH
Q 006717 228 PRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKAS 307 (634)
Q Consensus 228 ~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~ 307 (634)
+|++..+++||+||.|++++|+||.++||+|||||+|++++||||+++|.|
T Consensus 204 lR~~~~~~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v----------------------------- 254 (550)
T PTZ00401 204 LRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL----------------------------- 254 (550)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc-----------------------------
Confidence 999999999999999999999999999999999999999999999999965
Q ss_pred HhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH
Q 006717 308 IKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA 387 (634)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la 387 (634)
+|||+++||+||||||||+++
T Consensus 255 -----------------------------------------------------------~yf~~~~~L~qSpql~kq~li 275 (550)
T PTZ00401 255 -----------------------------------------------------------EYFNRFAYLAQSPQLYKQMVL 275 (550)
T ss_pred -----------------------------------------------------------ccCCCCeecCCCHHHHHHHHH
Confidence 479999999999999999987
Q ss_pred c-ccCceEEEccccccCcCCCCCccccccccchhhcCC-CHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccch----
Q 006717 388 C-ALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS-QLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDM---- 461 (634)
Q Consensus 388 ~-g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~-d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~---- 461 (634)
+ ||+|||+||||||||+++|+|||||||||||||+|. +|+++|+++|+||+++++.+.+++ .+++++...++.
T Consensus 276 ~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~~-~ei~~~~~~~p~~~~~ 354 (550)
T PTZ00401 276 QGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHT-KELKAVCQQYPFEPLV 354 (550)
T ss_pred hcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHccc-hhhhhhcccccccccc
Confidence 5 799999999999999999999999999999999986 699999999999999999998763 455544322211
Q ss_pred ------------------------hhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHH---
Q 006717 462 ------------------------TCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLA--- 514 (634)
Q Consensus 462 ------------------------~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~--- 514 (634)
.+.+++.. +..||+||+|.||+++|++.+. ..+.||.|+++++|++|+
T Consensus 355 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~----~~~~~~~dl~~~~E~~L~~~v 429 (550)
T PTZ00401 355 WKLTPERMKELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE----EKMAPTDDINTTNEKLLGKLV 429 (550)
T ss_pred ccccHHHHHhcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc----cCCCcccccCchHHHHHHHHH
Confidence 01222222 3557999999999999998632 235689999999999875
Q ss_pred hhhCCccEEEEe-CCCCCCCCccc-cCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHH
Q 006717 515 DEIYKRPVIVYN-YPKAVKPFYVR-LNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLR 592 (634)
Q Consensus 515 e~~~~~PvfVtd-yP~~~kPFy~~-~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~ 592 (634)
++.++.|+||+| ||.+++|||++ .++|+++++|||||+| |+||+||+||+|+++.|.++++++|+++..|+|||+++
T Consensus 430 ~~~~~~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~-G~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~ 508 (550)
T PTZ00401 430 KERYGTDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIR-GEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSF 508 (550)
T ss_pred HHhcCCCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeC-CEEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHH
Confidence 566789999998 99999999964 4567899999999995 89999999999999999999999999999999999999
Q ss_pred hcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 593 RHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 593 kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
+||+|||||||||||||+||+||++|||||++|||+|+|+.
T Consensus 509 ~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 509 RLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred HcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCCCC
Confidence 99999999999999999999999999999999999999984
No 11
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-100 Score=835.81 Aligned_cols=391 Identities=28% Similarity=0.503 Sum_probs=351.2
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCC----CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLV----SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLS 211 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~----~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~ 211 (634)
|+++|++|+||++. ||||++.+.. ...+.|+.||+|.|+|++++++ ...+++||++++++++|+|. .++|+.
T Consensus 32 gk~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~L~~gs~V~v~G~v~~~~-~~~~~~el~~~~i~vls~a~-~~~P~~ 107 (437)
T PRK05159 32 GGIAFLILRDRSGI--IQVVVKKKVDEELFETIKKLKRESVVSVTGTVKANP-KAPGGVEVIPEEIEVLNKAE-EPLPLD 107 (437)
T ss_pred CCeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhCCCCCcEEEEEEEEEcCC-CCCCCEEEEEeEEEEEeCCC-CCCCCC
Confidence 38999999999996 9999986531 1236799999999999999987 45688999999999999996 468875
Q ss_pred CC---CCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccC
Q 006717 212 RK---RLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKE 288 (634)
Q Consensus 212 kk---~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~ 288 (634)
.+ ..+.++++++||||+|++.++++||+||.|++++|+||.++||+||+||+|++++||||++.|.+
T Consensus 108 ~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~---------- 177 (437)
T PRK05159 108 ISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI---------- 177 (437)
T ss_pred ccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeE----------
Confidence 33 34689999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccc
Q 006717 289 GPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDF 368 (634)
Q Consensus 289 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 368 (634)
+|
T Consensus 178 ------------------------------------------------------------------------------~~ 179 (437)
T PRK05159 178 ------------------------------------------------------------------------------DY 179 (437)
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 47
Q ss_pred cCceeeeccchHHHHHHHHc-ccCceEEEccccccCcCCCCCccccccccchhhcCCC-HHHHHHHHHHHHHHHHHHHHh
Q 006717 369 FSRQTYLTVSGRLHLESYAC-ALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-LEDAMKCADDYFKFLCKWILE 446 (634)
Q Consensus 369 fg~~~yLtvSpQL~le~la~-g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~~dlm~l~E~Lik~l~~~vl~ 446 (634)
||+++||++|||||||++++ |++||||||||||||+++|+|||||||||||||+|+| ++++|+++|+||+++++++.+
T Consensus 180 ~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~ 259 (437)
T PRK05159 180 FEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAE 259 (437)
T ss_pred cCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865 6999999999999999998899999999999999998 999999999999999999999
Q ss_pred hCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhC---C-ccE
Q 006717 447 DCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIY---K-RPV 522 (634)
Q Consensus 447 ~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~---~-~Pv 522 (634)
++.+++++++..++ ..+.||+||||.||+++|++.+ ....||.+++.++|+.|++.+. . .|+
T Consensus 260 ~~~~~i~~~~~~~~---------~~~~~f~rit~~eA~~~l~~~~-----~~~~~~~~~~~~~e~~l~~~~~~~~~~~p~ 325 (437)
T PRK05159 260 NCEKELELLGIELP---------VPETPIPRITYDEAIEILKSKG-----NEISWGDDLDTEGERLLGEYVKEEYGSDFY 325 (437)
T ss_pred hhHHHHHhhccCCC---------cCCCCceEeEHHHHHHHHHHcC-----CCCCCCCCCCcHHHHHHHHHHhhhcCCceE
Confidence 88888877654321 2357999999999999997753 2356899999999999876542 2 389
Q ss_pred EEEeCCCCCCCCccccC-CCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcce
Q 006717 523 IVYNYPKAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSG 601 (634)
Q Consensus 523 fVtdyP~~~kPFy~~~~-~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgG 601 (634)
||+|||.+++|||++.+ +|+++++|||||+| |+||+||++|++++++|.++++++|++++.|+|||+|++||+|||||
T Consensus 326 fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~-g~Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G 404 (437)
T PRK05159 326 FITDYPSEKRPFYTMPDEDDPEISKSFDLLFR-GLEITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGG 404 (437)
T ss_pred EEecCchhcCcceeeecCCCCCEEEEEEEEEC-CEEEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCe
Confidence 99999999999999765 45689999999995 78999999999999999999999999999999999999999999999
Q ss_pred eeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 602 FSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 602 fGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||||||||+||+||.+|||||++|||+|+||.
T Consensus 405 ~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~ 436 (437)
T PRK05159 405 FGLGLERLTMKLLGLENIREAVLFPRDRHRLT 436 (437)
T ss_pred eeEhHHHHHHHHcCCCchhEEeeccCCCCCCC
Confidence 99999999999999999999999999999985
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=2.5e-100 Score=850.07 Aligned_cols=437 Identities=24% Similarity=0.373 Sum_probs=384.0
Q ss_pred hhhhhhccc-ccceeeeeecCCCCC-cccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC-------
Q 006717 92 CVEILQSRI-PFFRTIIRVLGGSAG-ISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS------- 162 (634)
Q Consensus 92 ~~~~~qs~~-~~fr~~~~v~~~~~~-~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~------- 162 (634)
-.||+||+. ...++|.++.+++.. .+++|+|+|||+++|. +|+++|++|+|+++. ||||+..+..+
T Consensus 54 ~~~~~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~Grv~~~R~---~gk~~Fl~Lrd~~~~--iQ~v~~~~~~~~~~~~~~ 128 (530)
T PLN02850 54 DVPLEELQSKVTGREWTDVSDLGEELAGSEVLIRGRVHTIRG---KGKSAFLVLRQSGFT--VQCVVFVSEVTVSKGMVK 128 (530)
T ss_pred cccccccccccCCceEeEhhhcchhhCCCEEEEEEEEEEEcc---CCCeEEEEEEeCCcC--EEEEEECCccccCHHHHH
Confidence 457789987 456789999998655 4589999999999998 999999999999985 99999765321
Q ss_pred CCCCCCCCcEEEEEEEEecCCC---CCCceEEEEEeeeEEEecCCCCCCCCCCCC--------------------CChhh
Q 006717 163 PSKIRPIGTCLMVEGVLKQPSV---QGKHAVELKVEKILHIGTVDHDKYPLSRKR--------------------LPMDM 219 (634)
Q Consensus 163 ~~~~l~~Gs~V~V~G~l~~~~~---~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~--------------------~~~e~ 219 (634)
+...|+.||+|.|+|+|+.++. +.++++||++++|.+|++|. .++|++.+. .+.++
T Consensus 129 ~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (530)
T PLN02850 129 YAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKAL-ATLPFNVEDAARSESEIEKALQTGEQLVRVGQDT 207 (530)
T ss_pred HHhCCCCCCEEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCC-CCCCCChhhcccccccccccccccccccccChhh
Confidence 2467999999999999996432 24679999999999999996 379987643 35789
Q ss_pred ccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccc
Q 006717 220 LRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGV 299 (634)
Q Consensus 220 lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~ 299 (634)
++++||||+||+..+++||+||.|++++|+||.++||+||+||+|++++||||+++|.|
T Consensus 208 rl~~R~LdlR~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v--------------------- 266 (530)
T PLN02850 208 RLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL--------------------- 266 (530)
T ss_pred hhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---------------------
Confidence 99999999999999999999999999999999999999999999999999999999975
Q ss_pred hHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccch
Q 006717 300 NLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSG 379 (634)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSp 379 (634)
+|||+++||+|||
T Consensus 267 -------------------------------------------------------------------~yf~~~~~L~qSp 279 (530)
T PLN02850 267 -------------------------------------------------------------------DYKGQPACLAQSP 279 (530)
T ss_pred -------------------------------------------------------------------ccCCcceecCCCH
Confidence 4799999999999
Q ss_pred HHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhhcCCC-HHHHHHHHHHHHHHHHHHHHhhCccchhhhcc
Q 006717 380 RLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-LEDAMKCADDYFKFLCKWILEDCSKDLEFVSK 457 (634)
Q Consensus 380 QL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~ 457 (634)
|||||+++ +||+||||||||||||+++|+|||+|||||||||+|.+ |+|+|+++|+||++++..+.+.|..++++++.
T Consensus 280 ql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~ 359 (530)
T PLN02850 280 QLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIRE 359 (530)
T ss_pred HHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcc
Confidence 99999976 58999999999999999999999999999999999984 99999999999999999999988888888776
Q ss_pred ccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHh---hhCCc-cEEEEeCCCCCCC
Q 006717 458 RIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLAD---EIYKR-PVIVYNYPKAVKP 533 (634)
Q Consensus 458 ~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e---~~~~~-PvfVtdyP~~~kP 533 (634)
.++...++. ..+++|++|.||+++|++.+. ...++.|+++++|+.|++ +.++. |+||+|||.+++|
T Consensus 360 ~~~~~~~~~-----~~~~~rit~~ea~~~L~~~g~-----~~~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~p 429 (530)
T PLN02850 360 QYPFEPLKY-----LPKTLRLTFAEGIQMLKEAGV-----EVDPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRP 429 (530)
T ss_pred cCCcchhhh-----cCCcccCCHHHHHHHHHHcCC-----CCCCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCc
Confidence 554322222 236889999999999988632 234677899999998865 33444 5778999999999
Q ss_pred Ccccc-CCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHH
Q 006717 534 FYVRL-NDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLF 612 (634)
Q Consensus 534 Fy~~~-~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ 612 (634)
||++. ++|+++++|||||+ +|+||+||+||+|+++.|.++++++|++++.++|||++++||+|||||||||||||+||
T Consensus 430 fY~~~~~~d~~~~~~fDl~i-~G~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~ 508 (530)
T PLN02850 430 FYTMPCPDDPKYSNSFDVFI-RGEEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVML 508 (530)
T ss_pred hhccccCCCCCeEEEEEEEe-CCEEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHH
Confidence 99654 46778999999999 58999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcCccccCCCCCCCCC
Q 006717 613 TTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 613 ltg~~nIRdVi~FPr~~~~~~ 633 (634)
+||++|||||++|||+|+||.
T Consensus 509 l~g~~nIr~v~~FPR~p~rl~ 529 (530)
T PLN02850 509 FCGLNNIRKTSLFPRDPQRLA 529 (530)
T ss_pred HcCCCchheEeecCCCCCCCC
Confidence 999999999999999999985
No 13
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=4.2e-94 Score=796.32 Aligned_cols=403 Identities=21% Similarity=0.315 Sum_probs=341.9
Q ss_pred cccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC-----C-CCCCCCCcEEEEEEEEecCCCCCCce
Q 006717 116 ISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS-----P-SKIRPIGTCLMVEGVLKQPSVQGKHA 189 (634)
Q Consensus 116 ~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-----~-~~~l~~Gs~V~V~G~l~~~~~~~~q~ 189 (634)
.+++|+|+|||+++|. +|+++|++|+||++. ||||++.+... + .+.++.||+|.|+|++.+++ +|+
T Consensus 52 ~~~~v~v~Grv~~~R~---~gk~~F~~l~D~~g~--iQ~~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~---~ge 123 (496)
T TIGR00499 52 KNIEVSIAGRIMARRS---MGKATFITLQDESGQ--IQLYVNKDDLPEDFYEFDEYLLDLGDIIGVTGYPFKTK---TGE 123 (496)
T ss_pred CCCEEEEEEEEEEEec---CCCeEEEEEEcCCcc--EEEEEECCcCcHHHHHHHHhcCCCCCEEEEEEEEEECC---CCc
Confidence 3567999999999998 999999999999986 99999865321 1 23589999999999999987 689
Q ss_pred EEEEEeeeEEEecCCCCCCCCCCCCCC---hhhccccceeeccc-chhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeee
Q 006717 190 VELKVEKILHIGTVDHDKYPLSRKRLP---MDMLRDSAHFRPRT-TTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVIT 265 (634)
Q Consensus 190 vEL~~~~i~vlg~~~~~~yPl~kk~~~---~e~lr~~rhLr~Rt-~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt 265 (634)
+||++++|.+|++|. +|||.+.++ .|+++++||||+|+ +..+++||+||.|++++|+||.++||+||+||+|+
T Consensus 124 lel~~~~i~ilsk~~---~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~ 200 (496)
T TIGR00499 124 LSVHVTELQILTKAL---RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQ 200 (496)
T ss_pred EEEEeeEEEEEecCC---CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeee
Confidence 999999999999984 788887764 59999999999995 68999999999999999999999999999999999
Q ss_pred cCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006717 266 TTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHL 345 (634)
Q Consensus 266 ~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (634)
++.+++++++|.+.
T Consensus 201 ~~~gga~a~pF~t~------------------------------------------------------------------ 214 (496)
T TIGR00499 201 VIPGGANARPFITH------------------------------------------------------------------ 214 (496)
T ss_pred cCCCCccceeEEee------------------------------------------------------------------
Confidence 88765557889642
Q ss_pred hhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhhcCC
Q 006717 346 ESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS 424 (634)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~ 424 (634)
.++|+.++||++|||||||+|+ +||+||||||||||||+++ +||||||||||||++|+
T Consensus 215 --------------------~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~ 273 (496)
T TIGR00499 215 --------------------HNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYA 273 (496)
T ss_pred --------------------cccCCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcC
Confidence 2468999999999999999975 6899999999999999997 69999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhccccc---------
Q 006717 425 QLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIF--------- 495 (634)
Q Consensus 425 d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f--------- 495 (634)
||+|+|+++|+||+++++.+.+++...+ -+.. ..++.||+||||.||+++|.+..+.++
T Consensus 274 d~~dlm~~~E~li~~i~~~l~~~~~~~~--~~~~----------~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l 341 (496)
T TIGR00499 274 DYEDLMDLTENLFKFLAQELLGTTKITY--GELE----------IDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETA 341 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccceec--Ccee----------ccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHH
Confidence 9999999999999999999987764322 1111 125679999999999997754322111
Q ss_pred ------------ccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhh
Q 006717 496 ------------ETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQ 563 (634)
Q Consensus 496 ------------~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsq 563 (634)
.....||..|...++.++ |+.+.+|+||+|||.+++||++...+|+++++|||||+ +|.||+||++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v-e~~l~~P~fv~dyP~~~splak~~~~~p~~~~rFeL~i-~G~Ei~ng~~ 419 (496)
T TIGR00499 342 KALAKKIGIEVAEKSLTLGHILNELFEQFL-EHTLIQPTFITHYPAEISPLAKRNPSNPEFTDRFELFI-AGKEIANAFS 419 (496)
T ss_pred HHHHHHcCCCcCCCCCCHHHHHHHHHHHHH-HhccCCCEEEECCchhcCcccccCCCCCCeEEEEEEEe-CCeEEecccc
Confidence 011233444544455554 56678899999999999999887777889999999999 5899999999
Q ss_pred hHHhHHHHHHHH------HHcCCCccCh--HHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCC
Q 006717 564 NEERIDMLNTRI------KELGLPREQY--EWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 564 Re~r~e~L~~~~------~~~gl~~~~~--~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~ 630 (634)
|+++++.+.+++ ++.|++++.+ +|||+|++||||||||||||||||+|+|||.+||||||+|||++.
T Consensus 420 El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 420 ELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 999998877775 4678887764 899999999999999999999999999999999999999999874
No 14
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-93 Score=789.24 Aligned_cols=402 Identities=19% Similarity=0.303 Sum_probs=338.7
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC---CC---CCCCCCCcEEEEEEEEecCCCCCCceEE
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV---SP---SKIRPIGTCLMVEGVLKQPSVQGKHAVE 191 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~---~~---~~~l~~Gs~V~V~G~l~~~~~~~~q~vE 191 (634)
++|+|+|||+++|. +|+++|++|+|+++. ||||+..+.. .+ .+.++.||+|.|+|++.+++ ++++|
T Consensus 66 ~~v~v~Grv~~~R~---~Gk~~F~~lrD~~g~--iQ~~~~~~~~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~---~gele 137 (505)
T PRK12445 66 IEVSVAGRMMTRRI---MGKASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ---TGELS 137 (505)
T ss_pred CEEEEEEEEEEEec---CCCcEEEEEEeCCcc--EEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEecC---CCcEE
Confidence 45666666666766 679999999999985 9999986431 12 24689999999999999987 68999
Q ss_pred EEEeeeEEEecCCCCCCCCCCCCC---Chhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 192 LKVEKILHIGTVDHDKYPLSRKRL---PMDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 192 L~~~~i~vlg~~~~~~yPl~kk~~---~~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
|+++++++||+|. +|||.+.+ +.|+++++||||+| ++..+++||+||.|++++|+||.++||+||+||+|+++
T Consensus 138 l~~~~~~llsk~~---~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~ 214 (505)
T PRK12445 138 IHCTELRLLTKAL---RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVI 214 (505)
T ss_pred EEEeEEEEEecCC---CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec
Confidence 9999999999985 78887765 56999999999999 57899999999999999999999999999999999977
Q ss_pred CCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006717 268 DSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLES 347 (634)
Q Consensus 268 ~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (634)
.+++++.+|.+
T Consensus 215 ~gGa~a~pF~t--------------------------------------------------------------------- 225 (505)
T PRK12445 215 PGGASARPFIT--------------------------------------------------------------------- 225 (505)
T ss_pred CCCCcccceec---------------------------------------------------------------------
Confidence 43223457732
Q ss_pred hhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhhcCCCH
Q 006717 348 RDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQL 426 (634)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~ 426 (634)
+.++|+.++||++|||||||+|+ +||+||||||||||||++ |+||||||||||||++|+||
T Consensus 226 -----------------~~~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~ 287 (505)
T PRK12445 226 -----------------HHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADY 287 (505)
T ss_pred -----------------ccccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCCH
Confidence 13679999999999999999965 689999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcc--------------
Q 006717 427 EDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTE-------------- 492 (634)
Q Consensus 427 ~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~-------------- 492 (634)
+|+|+++|+||+++++.+++.+.. .+-+..+| ++.||+||||.||++.+.....
T Consensus 288 ~d~m~l~E~li~~l~~~~~~~~~~--~~~~~~i~----------~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~ 355 (505)
T PRK12445 288 HDLIELTESLFRTLAQEVLGTTKV--TYGEHVFD----------FGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALA 355 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcccce--ecCceecc----------CCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 999999999999999999876532 12111111 4579999999999998743100
Q ss_pred --cccccccccccc-cChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHH
Q 006717 493 --KIFETKLEWGVA-LTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERID 569 (634)
Q Consensus 493 --~~f~~~~~~G~d-L~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e 569 (634)
.++.....|+.+ +..+++.+++|+.+.+|+||+|||.+++|||+++++|+++++|||||+ +|.||+||++|+++++
T Consensus 356 ~~~~~~~~~~~~~~~l~~~~~~~~vE~~l~~P~Fv~dyP~~~splak~~~~~p~~~~rFeL~i-~G~Ei~ng~~El~dp~ 434 (505)
T PRK12445 356 ESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFI-GGREIGNGFSELNDAE 434 (505)
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEECCCchhCcccccCCCCCCceEEEEEEe-CCEEEcccccccCCHH
Confidence 012222345543 667778889999999999999999999999988878889999999999 5899999999999999
Q ss_pred HHHHHHHH------cCCCccC--hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCC
Q 006717 570 MLNTRIKE------LGLPREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 570 ~L~~~~~~------~gl~~~~--~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~ 630 (634)
++.+++++ .|+++.. ++|||+|++||||||||||||||||+|+|||.+||||||+||+++.
T Consensus 435 eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 435 DQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred HHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 98888763 4776655 3899999999999999999999999999999999999999999875
No 15
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.6e-93 Score=785.88 Aligned_cols=404 Identities=21% Similarity=0.336 Sum_probs=340.3
Q ss_pred ccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC---C--CCCCCCCcEEEEEEEEecCCCCCCceEE
Q 006717 117 SNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS---P--SKIRPIGTCLMVEGVLKQPSVQGKHAVE 191 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~---~--~~~l~~Gs~V~V~G~l~~~~~~~~q~vE 191 (634)
++.|+|+|||+++|. +|+++|++|+|+++. ||||++++... + .+.|+.||+|.|+|++++++ ++++|
T Consensus 54 ~~~v~v~G~v~~~R~---~g~~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~t~---~ge~e 125 (491)
T PRK00484 54 EIEVSVAGRVMLKRV---MGKASFATLQDGSGR--IQLYVSKDDVGEEALEAFKKLDLGDIIGVEGTLFKTK---TGELS 125 (491)
T ss_pred CcEEEEEEEEEEEec---CCceEEEEEEcCCcc--EEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC---CCcEE
Confidence 367999999999998 999999999999995 99999865321 1 24599999999999999987 68999
Q ss_pred EEEeeeEEEecCCCCCCCCCCCCC---Chhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 192 LKVEKILHIGTVDHDKYPLSRKRL---PMDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 192 L~~~~i~vlg~~~~~~yPl~kk~~---~~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
|.++++++|++|. +|++.+.+ +.+.++++||||+| ++..+++||+||.|++++|+||.++||+||+||+|+++
T Consensus 126 l~~~~~~vls~~~---~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~ 202 (491)
T PRK00484 126 VKATELTLLTKSL---RPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPI 202 (491)
T ss_pred EEEeEEEEEeccC---CCCCcccccccchhhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceecc
Confidence 9999999999985 67776655 48999999999998 78999999999999999999999999999999999977
Q ss_pred CCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006717 268 DSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLES 347 (634)
Q Consensus 268 ~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (634)
.+++++++|.+.
T Consensus 203 ~~Ga~a~pF~t~-------------------------------------------------------------------- 214 (491)
T PRK00484 203 AGGAAARPFITH-------------------------------------------------------------------- 214 (491)
T ss_pred CCCccceeeeec--------------------------------------------------------------------
Confidence 655556899641
Q ss_pred hhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCH
Q 006717 348 RDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQL 426 (634)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~ 426 (634)
.+||+.++||+||||||||+| ++|++||||||||||||+++ +||||||||||||++|+|+
T Consensus 215 ------------------~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~ 275 (491)
T PRK00484 215 ------------------HNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADY 275 (491)
T ss_pred ------------------cccCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCCH
Confidence 268999999999999999996 56899999999999999997 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhc--------------c
Q 006717 427 EDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVT--------------E 492 (634)
Q Consensus 427 ~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~--------------~ 492 (634)
+|+|+++|+||+++++.+++++ ++++.+..++ ++.||+||||.||++.+.... .
T Consensus 276 ~d~m~~~E~li~~i~~~~~~~~--~i~~~~~~~~----------~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~ 343 (491)
T PRK00484 276 NDMMDLTEELIRHLAQAVLGTT--KVTYQGTEID----------FGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKE 343 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc--eEecCCEeec----------CCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHH
Confidence 9999999999999999998753 4544433222 467999999999998763210 0
Q ss_pred cccccccccccc-cChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHH
Q 006717 493 KIFETKLEWGVA-LTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDML 571 (634)
Q Consensus 493 ~~f~~~~~~G~d-L~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L 571 (634)
.+++....|+.+ +..++...++|+.+.+|+||+|||.+++||||++++|+++++|||||+ +|.||+||++|+++++.+
T Consensus 344 ~~~~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fi~dyP~~~~pf~k~~~~~~~~~~rFdL~i-~G~Ei~ngy~El~dp~~q 422 (491)
T PRK00484 344 LGIEVEKSWGLGKLINELFEEFVEPKLIQPTFITDYPVEISPLAKRHREDPGLTERFELFI-GGREIANAFSELNDPIDQ 422 (491)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhhhcCCcEEEECCChHHhhhhccCCCCCCeEEEEEEEE-CCEEEecchhhhCCHHHH
Confidence 011122233322 334444456788888999999999999999998888899999999999 588999999999888877
Q ss_pred HHHHH------HcCCCccC--hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCC
Q 006717 572 NTRIK------ELGLPREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGK 631 (634)
Q Consensus 572 ~~~~~------~~gl~~~~--~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~ 631 (634)
.++++ +.|.++.. ++|||+|++||||||||||||||||+|++||.+||||||+|||++..
T Consensus 423 ~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP~~~~~ 490 (491)
T PRK00484 423 RERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFPLMRPE 490 (491)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCCCCCCC
Confidence 77764 34555442 47999999999999999999999999999999999999999998853
No 16
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=5.4e-91 Score=776.71 Aligned_cols=407 Identities=17% Similarity=0.245 Sum_probs=338.2
Q ss_pred CCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC-----C---CCCCCCCcEEEEEEEEecCC
Q 006717 112 GSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS-----P---SKIRPIGTCLMVEGVLKQPS 183 (634)
Q Consensus 112 ~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-----~---~~~l~~Gs~V~V~G~l~~~~ 183 (634)
+.+..+++|+|+|||+++|. +|+++|++|+||++. ||||+..+... + .+.|+.||+|.|+|++.+++
T Consensus 103 ~~~~~~~~V~v~GrV~~~R~---~Gk~~F~~LrD~~g~--iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~t~ 177 (553)
T PLN02502 103 GEELEDVSVSVAGRIMAKRA---FGKLAFYDLRDDGGK--IQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTK 177 (553)
T ss_pred ccccCCCEEEEEEEEEEEec---CCCeEEEEEecCCcc--EEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEecC
Confidence 33345578999999999998 999999999999986 99999765321 2 24589999999999999987
Q ss_pred CCCCceEEEEEeeeEEEecCCCCCCCCCCCCC---Chhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEe
Q 006717 184 VQGKHAVELKVEKILHIGTVDHDKYPLSRKRL---PMDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYV 259 (634)
Q Consensus 184 ~~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~~---~~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV 259 (634)
++++||.+++|.+|++|. +||+.+.+ +.|+++++||||+| ++..+++||+||.|++++|+||.++||+||
T Consensus 178 ---~gelel~~~~i~vLs~~l---~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EV 251 (553)
T PLN02502 178 ---KGELSIFPTSFEVLTKCL---LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEV 251 (553)
T ss_pred ---CCCEEEEEeEEEEEeccC---CCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 689999999999999995 78888766 57999999999996 889999999999999999999999999999
Q ss_pred eCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhh
Q 006717 260 QVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTN 339 (634)
Q Consensus 260 ~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (634)
+||+|+++++++++++|.+
T Consensus 252 eTPiL~~~~gGA~a~pF~t------------------------------------------------------------- 270 (553)
T PLN02502 252 ETPMLNMIAGGAAARPFVT------------------------------------------------------------- 270 (553)
T ss_pred ECCeeeccCCCccccceee-------------------------------------------------------------
Confidence 9999999876555678853
Q ss_pred hhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccc
Q 006717 340 ELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVE 418 (634)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE 418 (634)
+.+||++++||++|||||||+| ++||+||||||||||||+++ +||||||||||
T Consensus 271 -------------------------~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE 324 (553)
T PLN02502 271 -------------------------HHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGIS-TRHNPEFTTCE 324 (553)
T ss_pred -------------------------ecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCC-Cccccceeehh
Confidence 1368999999999999999986 56999999999999999997 59999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhc-c-----
Q 006717 419 TEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVT-E----- 492 (634)
Q Consensus 419 ~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~-~----- 492 (634)
|||+|+||+|+|+++|+||+++++.+.+.+. +++.+..++ +..||+|+||.||++.+.... .
T Consensus 325 ~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~--~~~~~~~i~----------~~~p~~rit~~e~l~~~~g~~~~~~~~~ 392 (553)
T PLN02502 325 FYQAYADYNDMMELTEEMVSGMVKELTGSYK--IKYHGIEID----------FTPPFRRISMISLVEEATGIDFPADLKS 392 (553)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHhcccc--cccCCcccc----------CCCCceeccHHHHHHHHhCCCCCcCCCH
Confidence 9999999999999999999999999998764 223222121 457999999999987542110 0
Q ss_pred -------------cc--cccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeE
Q 006717 493 -------------KI--FETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGT 557 (634)
Q Consensus 493 -------------~~--f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggE 557 (634)
.+ +.....||..|...++.++. +.+.+|+||+|||.+++||||++++||++++|||||+ +|.|
T Consensus 393 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve-~~l~~PtFV~dyP~~~splak~~~~~p~~~erFELfi-~G~E 470 (553)
T PLN02502 393 DEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLE-ETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFI-NGRE 470 (553)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHH-hhcCCCEEEECCccccCcccccCCCCCCeEEEEEEEe-CCeE
Confidence 00 11123455556555665544 4568899999999999999998888999999999999 6999
Q ss_pred EechhhhHHhHHHHHHHH----HHcC--CCcc--ChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 558 VITGSQNEERIDMLNTRI----KELG--LPRE--QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 558 I~gGsqRe~r~e~L~~~~----~~~g--l~~~--~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
|+||+++++++..+.+++ ++++ .+.. .+++||+|++||||||||||||||||+|+|||..||||||+||+++
T Consensus 471 iangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~GiGiDRLvMlltg~~sIrdVi~FP~~k 550 (553)
T PLN02502 471 LANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAFPAMK 550 (553)
T ss_pred EccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEEehHHHHHHHHcCCcchheeecCCcCC
Confidence 999999998887644443 3333 2222 2578999999999999999999999999999999999999999986
Q ss_pred C
Q 006717 630 G 630 (634)
Q Consensus 630 ~ 630 (634)
.
T Consensus 551 ~ 551 (553)
T PLN02502 551 P 551 (553)
T ss_pred C
Confidence 4
No 17
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-91 Score=730.23 Aligned_cols=442 Identities=24% Similarity=0.370 Sum_probs=396.2
Q ss_pred ccccchhhhhhcccccceeeeeecCCCCCcc-cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC---
Q 006717 87 EKDVSCVEILQSRIPFFRTIIRVLGGSAGIS-NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS--- 162 (634)
Q Consensus 87 ~~~~~~~~~~qs~~~~fr~~~~v~~~~~~~~-~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~--- 162 (634)
..+..-.+++|||.+..++|.+|.++.+..+ ..|||||||+..|. +||++|+.||++.+. +||++..+...
T Consensus 51 ~~~yg~~~l~~s~~~~~~~~~~v~dl~~~~~~~~V~vRgrVhtsr~---~GK~~FlvLRq~~~t--VQ~~~~~~~~~~is 125 (533)
T KOG0556|consen 51 KERYGDLSLIQSQSKEGRELTDVSDLDESNDGSEVLVRGRVHTSRL---KGKLCFLVLRQQGST--VQCLVAVNEDGTIS 125 (533)
T ss_pred hhhcCcccccccccccccceeehhhhhhhcCCceEEEEEEEeeccc---cceEEEEEEeccCce--EEEEEEcCCCchHH
Confidence 3455678899999999999999999988866 68899999999998 999999999999985 99999765431
Q ss_pred -----CCCCCCCCcEEEEEEEEecCCC---C-CCceEEEEEeeeEEEecCCCCCCCCCCC--------------------
Q 006717 163 -----PSKIRPIGTCLMVEGVLKQPSV---Q-GKHAVELKVEKILHIGTVDHDKYPLSRK-------------------- 213 (634)
Q Consensus 163 -----~~~~l~~Gs~V~V~G~l~~~~~---~-~~q~vEL~~~~i~vlg~~~~~~yPl~kk-------------------- 213 (634)
|...++.+|+|.|.|+|++.+. + ..|.+||++.+|.+|+.+++ .+||+-+
T Consensus 126 k~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~-~LPl~veDasrse~~eE~a~~~~~~~~ 204 (533)
T KOG0556|consen 126 KQMVKFAGSISKESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALP-NLPLQVEDASRSEPDEEKAAEPESTLA 204 (533)
T ss_pred HHHHHHHhhcCcceEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccc-cCCeeehhhcccccchhhhcCCccccc
Confidence 5577999999999999998764 1 46999999999999999974 7898621
Q ss_pred CCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcc
Q 006717 214 RLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTA 293 (634)
Q Consensus 214 ~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~ 293 (634)
.++.++|+++|.||+||++.+|+||+...|++++|+||..+||+|||||+|.++.+|||+++|.|
T Consensus 205 ~Vn~dtRLdnRvlDLRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v--------------- 269 (533)
T KOG0556|consen 205 RVNLDTRLDNRVLDLRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV--------------- 269 (533)
T ss_pred eecccccccceeeecccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE---------------
Confidence 23678999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCcee
Q 006717 294 KDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQT 373 (634)
Q Consensus 294 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~ 373 (634)
+||+.++
T Consensus 270 -------------------------------------------------------------------------~Yfk~~A 276 (533)
T KOG0556|consen 270 -------------------------------------------------------------------------SYFKQKA 276 (533)
T ss_pred -------------------------------------------------------------------------EeccCcc
Confidence 5899999
Q ss_pred eeccchHHHHHHHHc-ccCceEEEccccccCcCCCCCccccccccchhhcCCC-HHHHHHHHHHHHHHHHHHHHhhCccc
Q 006717 374 YLTVSGRLHLESYAC-ALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-LEDAMKCADDYFKFLCKWILEDCSKD 451 (634)
Q Consensus 374 yLtvSpQL~le~la~-g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~~dlm~l~E~Lik~l~~~vl~~~~~d 451 (634)
||+||||||+||+++ +|+|||+|||+||||+|||+||+.||+-||.||+|.. |+++|+++.+|+-++++.+.+.|..+
T Consensus 277 ~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~E 356 (533)
T KOG0556|consen 277 YLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKE 356 (533)
T ss_pred hhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 6999999999999999999999999999999999986 99999999999999999999999999
Q ss_pred hhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhh----hCCccEEEEeC
Q 006717 452 LEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADE----IYKRPVIVYNY 527 (634)
Q Consensus 452 l~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~----~~~~PvfVtdy 527 (634)
|+.+++++..+.++. -.|-.|++|.|++++|++.+.. +..-+||+++.|+.|+.- +-..++++.+|
T Consensus 357 ie~Vr~qyp~e~fkf-----~~~~lrl~~~e~v~mLreaGvE-----~g~~dDlsTe~Ek~LG~lV~eky~tdfyildky 426 (533)
T KOG0556|consen 357 IETVRKQYPFEPFKF-----LEPPLRLTFKEGVAMLREAGVE-----MGDEDDLSTESEKKLGQLVREKYDTDFYILDKY 426 (533)
T ss_pred HHHHhhcCCCccccc-----CCCceEeehHHHHHHHHHcCcc-----cCCccccCChhHHHHHHHHHHHhCCcEEEEccC
Confidence 999999886544332 2456799999999999987421 222358999999987653 33578999999
Q ss_pred CCCCCCCccccC-CCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccH
Q 006717 528 PKAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGF 606 (634)
Q Consensus 528 P~~~kPFy~~~~-~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGi 606 (634)
|..++|||.+.+ +||.++++||+|+ +|.||.+|.||+|+++.|.++++++|+|+.....|+|+++||+|||||+|||+
T Consensus 427 P~avRPFYTmpd~~~p~ySnSyD~fm-RGeEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGL 505 (533)
T KOG0556|consen 427 PLAVRPFYTMPDPENPRYSNSYDFFM-RGEEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGL 505 (533)
T ss_pred ccccccccccCCCCCCCcccchhhee-chhhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccH
Confidence 999999996655 5667999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 607 DLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 607 ERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||++|+++|+.|||-+.+|||+|.|+.
T Consensus 506 ERvvmlyl~L~nIR~~SlFPRDPkRL~ 532 (533)
T KOG0556|consen 506 ERVVMLYLGLNNIRKTSLFPRDPKRLT 532 (533)
T ss_pred HHHHHHHhcCCcchhhccCCCCccccC
Confidence 999999999999999999999999873
No 18
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-88 Score=760.53 Aligned_cols=414 Identities=17% Similarity=0.252 Sum_probs=333.4
Q ss_pred ccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC--C--C---CCCCCCCcEEEEEEEEecCCCCCCce
Q 006717 117 SNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV--S--P---SKIRPIGTCLMVEGVLKQPSVQGKHA 189 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~--~--~---~~~l~~Gs~V~V~G~l~~~~~~~~q~ 189 (634)
++.|+|+|||+++|. +|+++|++|+|+++. ||||+..+.. . + .+.++.||+|.|+|++..++ +++
T Consensus 107 ~~~V~vaGrV~~~R~---~Gk~~F~~LrD~~G~--IQvv~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~v~~t~---~Ge 178 (659)
T PTZ00385 107 QATVRVAGRVTSVRD---IGKIIFVTIRSNGNE--LQVVGQVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQ---RGE 178 (659)
T ss_pred CCEEEEEEEEEeeec---cCCeEEEEEEECCce--EEEEEECCccCCHHHHHHHHhCCCCCCEEEEEEEEEecC---Cce
Confidence 456999999999999 999999999999996 9999987532 1 1 24689999999999999876 789
Q ss_pred EEEEEeeeEEEecCCCCCCCC-C--CCC---CChhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCC
Q 006717 190 VELKVEKILHIGTVDHDKYPL-S--RKR---LPMDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVP 262 (634)
Q Consensus 190 vEL~~~~i~vlg~~~~~~yPl-~--kk~---~~~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TP 262 (634)
+||+++++++|+++.....|+ + .+. .+.|+|+++||||+| ++..+++||+||.|++++|+||.++||+||+||
T Consensus 179 leI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTP 258 (659)
T PTZ00385 179 LSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETP 258 (659)
T ss_pred EEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCC
Confidence 999999999999953123332 2 132 378999999999997 567999999999999999999999999999999
Q ss_pred eeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhh
Q 006717 263 VITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELV 342 (634)
Q Consensus 263 iLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (634)
+|+++.+||++++|.+.
T Consensus 259 iL~~~~~ga~a~pF~t~--------------------------------------------------------------- 275 (659)
T PTZ00385 259 VLHTVASGANAKSFVTH--------------------------------------------------------------- 275 (659)
T ss_pred EeeccCCCCCccceEee---------------------------------------------------------------
Confidence 99999999999999542
Q ss_pred hhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhh
Q 006717 343 SHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEI 421 (634)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~ 421 (634)
.++|+.++||++|||||||+|+ +||+||||||||||||+++ +||||||||||||+
T Consensus 276 -----------------------~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~-~rH~pEFTmlE~y~ 331 (659)
T PTZ00385 276 -----------------------HNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDAD-RSHNPEFTSCEFYA 331 (659)
T ss_pred -----------------------cccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCC-CCccccccceeeee
Confidence 2568999999999999999965 6999999999999999997 89999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHh-cc--ccc---
Q 006717 422 AFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKV-TE--KIF--- 495 (634)
Q Consensus 422 af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~-~~--~~f--- 495 (634)
+|+||+|+|+++|+||++++..+.+.. .+++..... .+. . .+-.+..||+||||.|++...... .. .++
T Consensus 332 a~~d~~d~m~l~E~li~~~~~~v~g~~--~~~~~~~~~-~g~-~-~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~ 406 (659)
T PTZ00385 332 AYHTYEDLMPMTEDIFRQLAMRVNGTT--VVQIYPENA-HGN-P-VTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTP 406 (659)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhcCCe--eEEeecccc-CCC-c-ccccCCCCceEEeHHHHHHHHhCCCCCccccCCCH
Confidence 999999999999999999999998743 333321000 000 0 001145699999966665432110 00 000
Q ss_pred -------ccccccccccChH---------HHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEe
Q 006717 496 -------ETKLEWGVALTAE---------HLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVI 559 (634)
Q Consensus 496 -------~~~~~~G~dL~~e---------~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~ 559 (634)
....+||.++..+ ....++++.+.+|+||+|||.+++||++.+.+||++++|||||+ +|.||+
T Consensus 407 ~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l~qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi-~G~Eia 485 (659)
T PTZ00385 407 KGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRVVEPTFVMDHPLFMSPLAKEQVSRPGLAERFELFV-NGIEYC 485 (659)
T ss_pred HHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhhCCcEEEeCCccccCcccccCCCCCCeEEEEEEEe-CCeEee
Confidence 0112334332221 11223455568999999999999999998888899999999999 799999
Q ss_pred chhhhHHhHHHHHHHH-----HHcCCCccC---hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCC
Q 006717 560 TGSQNEERIDMLNTRI-----KELGLPREQ---YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGK 631 (634)
Q Consensus 560 gGsqRe~r~e~L~~~~-----~~~gl~~~~---~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~ 631 (634)
||+++++++..+.+++ .+.+.|++. ++|||+|++||||||||||||||||+|+|||.+||||||+||+++..
T Consensus 486 NGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~~ 565 (659)
T PTZ00385 486 NAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQD 565 (659)
T ss_pred ecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCcccccc
Confidence 9999999999988888 444555555 49999999999999999999999999999999999999999988753
No 19
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=2.8e-87 Score=749.55 Aligned_cols=411 Identities=14% Similarity=0.208 Sum_probs=327.8
Q ss_pred ccccccceeeeccCCCCCCC-ceEEEEEEcCccceeEEEEEeCCCC-----CC---CCCCCCCcEEEEEEEEecCCCCCC
Q 006717 117 SNNVPLREKLEALVPKPPPP-STVFLQVSDGSCVASLQVVVESTLV-----SP---SKIRPIGTCLMVEGVLKQPSVQGK 187 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G-~l~Fl~l~Dgs~~~~lQvV~~~~~~-----~~---~~~l~~Gs~V~V~G~l~~~~~~~~ 187 (634)
+..|+|+|||+++|. +| +++|++|+|+++. ||||++.+.. .+ .+.++.||+|.|+|.+.+++ +
T Consensus 132 ~~~v~v~Grv~~~R~---~G~k~~F~~L~d~~g~--iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~---~ 203 (585)
T PTZ00417 132 DTILNVTGRIMRVSA---SGQKLRFFDLVGDGAK--IQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSK---K 203 (585)
T ss_pred CCeEEEEEEEEeeec---CCCCCEEEEEEeCCee--EEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCC---C
Confidence 356899999999998 88 7999999888874 9999986531 12 24689999999999998876 6
Q ss_pred ceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeec
Q 006717 188 HAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITT 266 (634)
Q Consensus 188 q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~ 266 (634)
+++||.+++|++|++|. .++|+.-...+.+.++++||||+| ++..+++||+||.|++++|+||.++||+||+||+|++
T Consensus 204 gel~i~~~~i~llsk~l-~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~ 282 (585)
T PTZ00417 204 GELSIFPKETIILSPCL-HMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNL 282 (585)
T ss_pred ceEEEEEEEEEEEecCC-CCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeec
Confidence 89999999999999996 346654223478999999999999 7789999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 006717 267 TDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLE 346 (634)
Q Consensus 267 s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (634)
+.+++++.+|.+
T Consensus 283 ~~GGA~a~PF~T-------------------------------------------------------------------- 294 (585)
T PTZ00417 283 VAGGANARPFIT-------------------------------------------------------------------- 294 (585)
T ss_pred cCCcccceeEEe--------------------------------------------------------------------
Confidence 843233457742
Q ss_pred hhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 347 SRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
+.++|++++||++|||||||+|+ +||+||||||||||||+++ +||||||||||||+||+|
T Consensus 295 ------------------~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~~-~rHnpEFTmlE~y~ay~d 355 (585)
T PTZ00417 295 ------------------HHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGID-NTHNPEFTSCEFYWAYAD 355 (585)
T ss_pred ------------------cccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCCC-CCccceeeeeeeeeecCC
Confidence 12468899999999999999975 5899999999999999997 699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHH-----------------
Q 006717 426 LEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALE----------------- 488 (634)
Q Consensus 426 ~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~----------------- 488 (634)
|+|+|+++|+||++++..+.+.....+.-.+..... ....+..||+|+||.||++.+.
T Consensus 356 y~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~-----~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el 430 (585)
T PTZ00417 356 FYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDP-----IEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKM 430 (585)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcceeeeccccccccc-----ccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHH
Confidence 999999999999999999886543221111000000 0011456899999988877321
Q ss_pred -----HhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhh
Q 006717 489 -----KVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQ 563 (634)
Q Consensus 489 -----~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsq 563 (634)
+. +..+.....||..|...++.++.+.+.++|+||+|||.+++|||+...+||++++|||||+ +|.||+||++
T Consensus 431 ~~~l~~~-g~~~~~~~~~~~~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPLak~~~~dp~v~eRFELfi-~G~Eiangys 508 (585)
T PTZ00417 431 INLIKEN-KIEMPNPPTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPLAKYHRSKPGLTERLEMFI-CGKEVLNAYT 508 (585)
T ss_pred HHHHHHc-CCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEECCChhhCchhhhcCCCCCeEEeEEeEE-CCEEEccCcc
Confidence 11 1111122345555555555554444445699999999999999987777899999999999 8999999998
Q ss_pred hHHhHHHHHHH------HHHcCCCcc--ChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCC
Q 006717 564 NEERIDMLNTR------IKELGLPRE--QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 564 Re~r~e~L~~~------~~~~gl~~~--~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~ 630 (634)
+++++.++.++ +++.|.++. .+++||+|++||||||||||||||||+|+|||.+||||||+||+++.
T Consensus 509 ELnDp~eQr~Rf~~q~~~r~~g~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 509 ELNDPFKQKECFSAQQKDREKGDAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred hhcCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 88888876654 445563332 14559999999999999999999999999999999999999999875
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.3e-87 Score=791.67 Aligned_cols=408 Identities=18% Similarity=0.238 Sum_probs=342.5
Q ss_pred ccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC------CCCCCCCCcEEEEEEEEecCCCCCCceE
Q 006717 117 SNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS------PSKIRPIGTCLMVEGVLKQPSVQGKHAV 190 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~------~~~~l~~Gs~V~V~G~l~~~~~~~~q~v 190 (634)
+++|+|+|||+++|. +|+++|++|+|+++. ||||++++... +.+.++.||+|.|+|++.+++ ++++
T Consensus 651 ~~~V~v~Grv~~~R~---~G~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~~l~~gd~V~v~G~v~~t~---~ge~ 722 (1094)
T PRK02983 651 GEEVSVSGRVLRIRD---YGGVLFADLRDWSGE--LQVLLDASRLEQGSLADFRAAVDLGDLVEVTGTMGTSR---NGTL 722 (1094)
T ss_pred CCEEEEEEEEEEEee---CCCeEEEEEEeCCee--EEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEEcC---CCCE
Confidence 346889999999988 899999999999985 99999876421 235689999999999999987 5899
Q ss_pred EEEEeeeEEEecCCCCCCCCCCCCC---Chhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeec
Q 006717 191 ELKVEKILHIGTVDHDKYPLSRKRL---PMDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITT 266 (634)
Q Consensus 191 EL~~~~i~vlg~~~~~~yPl~kk~~---~~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~ 266 (634)
||++++++++++|. +||++|.+ +.|.+.++||||+| ++..+++||+||.|++++|+||.++||+||+||+|++
T Consensus 723 ei~~~~i~ll~k~~---~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~ 799 (1094)
T PRK02983 723 SLLVTSWRLAGKCL---RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQ 799 (1094)
T ss_pred EEEEeEEEEEeccC---cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeec
Confidence 99999999999995 78887665 57899999999997 5689999999999999999999999999999999999
Q ss_pred CCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 006717 267 TDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLE 346 (634)
Q Consensus 267 s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (634)
+.||+++++|.+.
T Consensus 800 ~~gGa~a~pF~t~------------------------------------------------------------------- 812 (1094)
T PRK02983 800 VHGGANARPFVTH------------------------------------------------------------------- 812 (1094)
T ss_pred cCCCcccceeEee-------------------------------------------------------------------
Confidence 9987788999642
Q ss_pred hhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 347 SRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
.+||++++||+||||||||+|+ +||+||||||||||||+++ +||||||||||+|++|+|
T Consensus 813 -------------------~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~d 872 (1094)
T PRK02983 813 -------------------INAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHAD 872 (1094)
T ss_pred -------------------ecCCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCC-CCccccccchhhhhhcCC
Confidence 3689999999999999999965 6899999999999999997 699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHh--------------c
Q 006717 426 LEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKV--------------T 491 (634)
Q Consensus 426 ~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~--------------~ 491 (634)
|+|+|+++|+||+++++.+++... +.+-+.... .....++.||+||||.||++..... .
T Consensus 873 y~d~m~l~E~li~~i~~~v~~~~~--~~~~~~~~~-----~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~ 945 (1094)
T PRK02983 873 YDTMRDLTRELIQNAAQAAHGAPV--VMRPDGDGV-----LEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLC 945 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcE--EeeCCcccc-----ccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 999999999999999999976532 111110000 0011256799999999999743110 0
Q ss_pred -cccccccccccc-ccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHH
Q 006717 492 -EKIFETKLEWGV-ALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERID 569 (634)
Q Consensus 492 -~~~f~~~~~~G~-dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e 569 (634)
..+++....|+. ++..+++..++|+.+.+|+||+|||.+++||||++++|+++++|||||+ +|.||+||+++++++.
T Consensus 946 ~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fv~dyP~~~spla~~~~~~p~~~erFdL~i-~G~Ei~ng~~El~Dp~ 1024 (1094)
T PRK02983 946 DAAGIPYRTDWDAGAVVLELYEHLVEDRTTFPTFYTDFPTSVSPLTRPHRSDPGLAERWDLVA-WGVELGTAYSELTDPV 1024 (1094)
T ss_pred HHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEEEECCCcccccccccCCCCCCeeEEEEEEE-CCEEEeccccccCCHH
Confidence 012233344553 3667778888999999999999999999999999888899999999999 5899999999988888
Q ss_pred HHHHHHH-----HcCCCccCh---HHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCC
Q 006717 570 MLNTRIK-----ELGLPREQY---EWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGK 631 (634)
Q Consensus 570 ~L~~~~~-----~~gl~~~~~---~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~ 631 (634)
++.++++ +.+.|++.+ +|||+|++||||||||||||||||+|+|||. ||||||+||+.+.+
T Consensus 1025 eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~~ 1093 (1094)
T PRK02983 1025 EQRRRLTEQSLLAAGGDPEAMELDEDFLQALEYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKPR 1093 (1094)
T ss_pred HHHHHHHHHHHHHhCCChhhccccHHHHHHHHcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCCC
Confidence 7755543 456676654 7999999999999999999999999999996 99999999998753
No 21
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=7.5e-86 Score=737.79 Aligned_cols=380 Identities=21% Similarity=0.338 Sum_probs=309.5
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCC--CCCCCCCCcEEEEEEEEecCCC------CCCceEEEEEeeeEEEecCCCCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVS--PSKIRPIGTCLMVEGVLKQPSV------QGKHAVELKVEKILHIGTVDHDK 207 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~--~~~~l~~Gs~V~V~G~l~~~~~------~~~q~vEL~~~~i~vlg~~~~~~ 207 (634)
|+++|++|+|++|. +|||++.+... ..+.|+.||+|.|+|+|..++. ..++++||.++++++|++|. .
T Consensus 31 Gkl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~--~ 106 (583)
T TIGR00459 31 GGLIFIDLRDRSGI--VQVVCDPDADALKLAKGLRNEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSK--T 106 (583)
T ss_pred CCcEEEEEEeCCcc--EEEEEeCCHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--C
Confidence 37999999999996 99999865221 2356899999999999997652 23689999999999999985 6
Q ss_pred CCCCCCC--CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeecccccc
Q 006717 208 YPLSRKR--LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKR 285 (634)
Q Consensus 208 yPl~kk~--~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~ 285 (634)
+|+++.. .+.+.|+++||||+|++.++++||+||.|++++|+||.++||+||+||+|+.++||||++ |.|++.
T Consensus 107 ~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~~---- 181 (583)
T TIGR00459 107 PPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-YLVPSR---- 181 (583)
T ss_pred CCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCCCCCcc-eeeeee----
Confidence 8887542 357788899999999999999999999999999999999999999999999999999986 755321
Q ss_pred ccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCccccc
Q 006717 286 EKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFS 365 (634)
Q Consensus 286 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
T Consensus 182 -------------------------------------------------------------------------------- 181 (583)
T TIGR00459 182 -------------------------------------------------------------------------------- 181 (583)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCce-eeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHH
Q 006717 366 EDFFSRQ-TYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKW 443 (634)
Q Consensus 366 ~~ffg~~-~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~ 443 (634)
+++.. +||+||||||||+| ++|++||||||||||||+++|.|| |||||||+||+|+|++|+|+++|+||+++++.
T Consensus 182 --~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~v~~~ 258 (583)
T TIGR00459 182 --VHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLE 258 (583)
T ss_pred --cCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 12222 35999999999985 568999999999999999998777 99999999999999999999999999999998
Q ss_pred HHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhc--------------------------------
Q 006717 444 ILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVT-------------------------------- 491 (634)
Q Consensus 444 vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~-------------------------------- 491 (634)
+.+. + +..||+||||.||++..-.-.
T Consensus 259 v~~~------------~----------~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~ 316 (583)
T TIGR00459 259 VKGI------------D----------LKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGG 316 (583)
T ss_pred HhCC------------C----------CCCCceEEEHHHHHHHHCCCCCccccCcccccHHHhhccCCcchhhhhhccCC
Confidence 7641 1 346999999999997631000
Q ss_pred -----------c----ccc------------c------ccccccc-----ccChHH-H----------------------
Q 006717 492 -----------E----KIF------------E------TKLEWGV-----ALTAEH-L---------------------- 510 (634)
Q Consensus 492 -----------~----~~f------------~------~~~~~G~-----dL~~e~-E---------------------- 510 (634)
. ..+ . ....|.. -+..+. +
T Consensus 317 ~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~ 396 (583)
T TIGR00459 317 RVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKK 396 (583)
T ss_pred eEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcch
Confidence 0 000 0 0000000 001100 0
Q ss_pred ---------H-hH------HhhhCCccEEEEeCCCC-----------CCCCccccCCCCC---------ceEEEEEeecC
Q 006717 511 ---------S-YL------ADEIYKRPVIVYNYPKA-----------VKPFYVRLNDDGN---------TVAAFDMVVPK 554 (634)
Q Consensus 511 ---------r-~L------~e~~~~~PvfVtdyP~~-----------~kPFy~~~~~d~~---------~~~~fDLlvP~ 554 (634)
| .| +++...+|+||+|||.. ++||+|++.+|.. .+++|||++ |
T Consensus 397 ~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvl-n 475 (583)
T TIGR00459 397 IVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVL-N 475 (583)
T ss_pred hHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCccccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEE-e
Confidence 0 11 12222479999999997 9999998777655 689999999 8
Q ss_pred CeEEechhhhHHhHHHHHHHHHHcCCCcc----ChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCC
Q 006717 555 GGTVITGSQNEERIDMLNTRIKELGLPRE----QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 555 ggEI~gGsqRe~r~e~L~~~~~~~gl~~~----~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~ 630 (634)
|.||+|||.|+|+.+.++++++..|++++ .+.+||+|++||+|||||+|||||||+|+|||.+||||||+||++..
T Consensus 476 G~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~ 555 (583)
T TIGR00459 476 GVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTA 555 (583)
T ss_pred ceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCC
Confidence 99999999999999999999999998765 38999999999999999999999999999999999999999999875
No 22
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-85 Score=680.81 Aligned_cols=441 Identities=26% Similarity=0.427 Sum_probs=387.1
Q ss_pred cccccccccccccccccHH-HHhhcCCCCCCCCCcEEEEEEEEeecccCCCCCCCCCCCCccchhhhhchhhhhcccccc
Q 006717 13 TTATPVTLTWRYSNRVLLK-TILESGDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGDAAAKSSKEKEKEKDVS 91 (634)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (634)
-.++-||++.-.+-....+ .|.+ +....|++|.|.|||-..|.+|
T Consensus 94 e~a~ki~ised~slp~ak~iki~~----s~~~r~qrVkv~gWVhrlR~qk------------------------------ 139 (545)
T KOG0555|consen 94 EEAKKITISEDKSLPAAKKIKIYD----STENRGQRVKVFGWVHRLRRQK------------------------------ 139 (545)
T ss_pred HhhhcccccCCCCCchhheeeecc----cccccCceEEeehhhHhhhhcC------------------------------
Confidence 3467788875555433222 2222 3447899999999999999988
Q ss_pred hhhhhhcccccceeeeeecCCCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC-C-CCCCCC
Q 006717 92 CVEILQSRIPFFRTIIRVLGGSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS-P-SKIRPI 169 (634)
Q Consensus 92 ~~~~~qs~~~~fr~~~~v~~~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-~-~~~l~~ 169 (634)
+++||.|+||+++ ||||++.+... + .-.|++
T Consensus 140 ---------------------------------------------~l~FivLrdg~gf--lqCVl~~kl~~~yd~~~Ls~ 172 (545)
T KOG0555|consen 140 ---------------------------------------------SLIFIVLRDGTGF--LQCVLSDKLCQSYDALTLST 172 (545)
T ss_pred ---------------------------------------------ceEEEEEecCCce--EEEEEcchhhhhhccccccc
Confidence 8999999999998 99999887653 2 235889
Q ss_pred CcEEEEEEEEecCCCCC--CceEEEEEeeeEEEecCCCC--CCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHH
Q 006717 170 GTCLMVEGVLKQPSVQG--KHAVELKVEKILHIGTVDHD--KYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTH 245 (634)
Q Consensus 170 Gs~V~V~G~l~~~~~~~--~q~vEL~~~~i~vlg~~~~~--~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~ 245 (634)
+++|.|.|++++.|+|+ .+++||.|+-++++|.+.+. +.||. ...+++.++++|||-+|....+.++++|+.+++
T Consensus 173 essv~vYG~i~~~p~GK~apgghEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr 251 (545)
T KOG0555|consen 173 ESSVTVYGTIKKLPEGKSAPGGHELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLR 251 (545)
T ss_pred cceEEEEEEEecCcCCCCCCCCceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHH
Confidence 99999999999998765 49999999999999988654 44543 346889999999999999999999999999999
Q ss_pred HHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhH
Q 006717 246 ATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNR 325 (634)
Q Consensus 246 air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (634)
++|++|.+.||+||.+|.|.....|||+.+|..
T Consensus 252 ~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkl----------------------------------------------- 284 (545)
T KOG0555|consen 252 AMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKL----------------------------------------------- 284 (545)
T ss_pred HHHHHHHhcCceecCCCceEEEEecCcceEEee-----------------------------------------------
Confidence 999999999999999999999999999988853
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcC
Q 006717 326 EALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKK 405 (634)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s 405 (634)
||||.++|||||.|||||.+..++++||+|.++||||+|
T Consensus 285 -----------------------------------------dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 285 -----------------------------------------DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKS 323 (545)
T ss_pred -----------------------------------------cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhh
Confidence 799999999999999999999999999999999999999
Q ss_pred CCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCcc-chhhhccccchhhhhhhccccCCCCceeeHHHHH
Q 006717 406 ESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSK-DLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAV 484 (634)
Q Consensus 406 ~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~-dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi 484 (634)
+|+|||+|||++|+|++|.+++|+|+.+|+|+++.+..+++.... .+..++..+ ...+.||.||.|.|||
T Consensus 324 rTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y~dAI 394 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNYSDAI 394 (545)
T ss_pred hhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCHHHHH
Confidence 999999999999999999999999999999999999999986533 333443333 1257899999999999
Q ss_pred HHHHHhcccc-cccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccC-CCCCceEEEEEeecCCeEEechh
Q 006717 485 KALEKVTEKI-FETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGS 562 (634)
Q Consensus 485 ~~L~~~~~~~-f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~-~d~~~~~~fDLlvP~ggEI~gGs 562 (634)
+.|+++..++ -....++|+|+....||++++.+ +.|+|++.||.++|+|||+.. +|++.+++.|+++||+|||+|||
T Consensus 395 ~wLke~~vk~edg~~fefGdDI~eAaER~mtdtI-g~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGS 473 (545)
T KOG0555|consen 395 EWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTI-GVPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGS 473 (545)
T ss_pred HHHHhcCCcCccCcccccccchhhHHHHhhhhhc-CCceEEeeccccccceeeecccCccccceeeeeecCCccccccce
Confidence 9999874322 22456789999999999999865 779999999999999999765 56789999999999999999999
Q ss_pred hhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 563 QNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 563 qRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
+|+.+.++|.+.+++.|+|+.+|.||+|.++||..||||+|||+||++|||++..+||||.+|||.-+||.
T Consensus 474 MRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 474 MRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred eeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995
No 23
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-85 Score=703.05 Aligned_cols=399 Identities=22% Similarity=0.341 Sum_probs=341.4
Q ss_pred ccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC------CCCCCCCCcEEEEEEEEecCCCCCCceEEE
Q 006717 119 NVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS------PSKIRPIGTCLMVEGVLKQPSVQGKHAVEL 192 (634)
Q Consensus 119 ~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~------~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL 192 (634)
.|.|+|||+.+|. +||++|++|.|+++. ||++++++... +.+.++.||+|.|+|.+..++ ++++.|
T Consensus 63 ~v~vAGRi~~~R~---~GK~~F~~i~d~~gk--iQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~---~GelSv 134 (502)
T COG1190 63 EVSVAGRIMTIRN---MGKASFADLQDGSGK--IQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTK---TGELSV 134 (502)
T ss_pred eeEEecceeeecc---cCceeEEEEecCCce--EEEEEeccccchhhHHHHHhccccCCEEeeeeeeeecC---CCceEE
Confidence 4999999999998 999999999999995 99999976421 246788999999999999998 799999
Q ss_pred EEeeeEEEecCCCCCCCCCCCCCC---hhhccccceeecccc-hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 193 KVEKILHIGTVDHDKYPLSRKRLP---MDMLRDSAHFRPRTT-TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 193 ~~~~i~vlg~~~~~~yPl~kk~~~---~e~lr~~rhLr~Rt~-~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.|+++.+|++|. .|||.|.|+ .|.++++||||+-.| ..+.+|..||.|+++||+||.++||+||+||+|+...
T Consensus 135 ~v~~~~lLsKsL---~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~ 211 (502)
T COG1190 135 SVEELRLLSKSL---RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIP 211 (502)
T ss_pred EEEEEeeecccC---CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccC
Confidence 999999999996 799999985 499999999999855 7899999999999999999999999999999999999
Q ss_pred CCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 006717 269 SEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESR 348 (634)
Q Consensus 269 ~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (634)
+++++.||.+
T Consensus 212 GGA~ArPF~T---------------------------------------------------------------------- 221 (502)
T COG1190 212 GGAAARPFIT---------------------------------------------------------------------- 221 (502)
T ss_pred CCccccccee----------------------------------------------------------------------
Confidence 8888999953
Q ss_pred hhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhhcCCCHH
Q 006717 349 DKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLE 427 (634)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~ 427 (634)
+++.++.+.||++||+||||+|+ .||+||||||++||||+.+ .||||||||||+|+||+||+
T Consensus 222 ----------------hhNald~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid-~tHNPEFTmlE~Y~AYaDy~ 284 (502)
T COG1190 222 ----------------HHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGID-TTHNPEFTMLEFYQAYADYE 284 (502)
T ss_pred ----------------eecccCCceEEeeccHHHHHHHHhcCchhheeeccccccCCCc-cccCcchhhHHHHHHHhHHH
Confidence 24668889999999999999975 5899999999999999995 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHh-cc--------------
Q 006717 428 DAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKV-TE-------------- 492 (634)
Q Consensus 428 dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~-~~-------------- 492 (634)
|+|+++|+||+++++.+.+.. .+.+-+..+| ++.||+||+|.||+...... ..
T Consensus 285 D~m~ltE~Li~~~a~~v~gt~--~v~y~~~~id----------~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~ 352 (502)
T COG1190 285 DLMDLTEELIKELAKEVNGTT--KVTYGGQEID----------FSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKK 352 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCe--EEEECCEeEe----------cCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 999999999999999998743 4555555554 77899999999999642211 00
Q ss_pred cccccc--cccccc-cChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechh-------
Q 006717 493 KIFETK--LEWGVA-LTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGS------- 562 (634)
Q Consensus 493 ~~f~~~--~~~G~d-L~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGs------- 562 (634)
.++... ..||.. |..+....++|..+.+|+||+|||.+++|++++++++|++++|||||+ +|.|||||+
T Consensus 353 ~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv~d~P~eiSPLak~~~~~p~~teRFElfi-~g~EiaNaysELNDP~ 431 (502)
T COG1190 353 HGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEISPLAKRHRSNPGLTERFELFI-GGKEIANAYSELNDPV 431 (502)
T ss_pred hCCCcCccccccHHHHHHHHHHHHhhhhhcCCceeecCccccCccccCCCCCcchhhhheeee-ccEEeeeccchhcCHH
Confidence 011111 115542 333444456888888999999999999999999999999999999999 899999995
Q ss_pred -hhHHhHHHHHHHHHHcCCCccC--hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCC
Q 006717 563 -QNEERIDMLNTRIKELGLPREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 563 -qRe~r~e~L~~~~~~~gl~~~~--~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~ 630 (634)
|| +||+.+ .+.++.|.+++. +++||+|++|||||+||+|||||||||+|||..||||||+||-.+.
T Consensus 432 dQ~-~RF~~Q-~~~k~~Gddea~~~Dedfv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP~mr~ 500 (502)
T COG1190 432 DQR-ERFEAQ-VEEKEAGDDEAMELDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRP 500 (502)
T ss_pred HHH-HHHHHH-HHHHHcCCccccccCHHHHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheecccccCC
Confidence 55 566653 444667877665 6899999999999999999999999999999999999999998764
No 24
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=9.7e-85 Score=688.21 Aligned_cols=319 Identities=39% Similarity=0.704 Sum_probs=291.1
Q ss_pred CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCccc
Q 006717 215 LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAK 294 (634)
Q Consensus 215 ~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~ 294 (634)
+++|+++++||||+|++..++++++||.|.+++|+||.++||+||+||+|+.++|||++++|.+
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---------------- 65 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---------------- 65 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc----------------
Confidence 5789999999999999999999999999999999999999999999999999999999999864
Q ss_pred ccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceee
Q 006717 295 DIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTY 374 (634)
Q Consensus 295 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~y 374 (634)
+|||+++|
T Consensus 66 ------------------------------------------------------------------------~~~~~~~y 73 (322)
T cd00776 66 ------------------------------------------------------------------------SYFGKPAY 73 (322)
T ss_pred ------------------------------------------------------------------------ccCCCcce
Confidence 58999999
Q ss_pred eccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCC-CHHHHHHHHHHHHHHHHHHHHhhCccchh
Q 006717 375 LTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS-QLEDAMKCADDYFKFLCKWILEDCSKDLE 453 (634)
Q Consensus 375 LtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~-d~~dlm~l~E~Lik~l~~~vl~~~~~dl~ 453 (634)
|++|||||||++++|++|||+||||||||+++|.||||||||||||++|+ |++|+|+++|+||+++++++.+.+..++.
T Consensus 74 L~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~ 153 (322)
T cd00776 74 LAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELE 153 (322)
T ss_pred ecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 99999999999888899999999999999999999999999999999999 99999999999999999999999887776
Q ss_pred hhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCC
Q 006717 454 FVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKP 533 (634)
Q Consensus 454 ~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kP 533 (634)
+++ .+ ..+...+..||+||||.||+++|.+.... ....||.+++.++|++|++.+.++|+||+|||.+++|
T Consensus 154 ~~~-~~-----~~~~~~~~~~~~rit~~eA~~~l~~~~~~---~~~~~~~~l~~~~e~~l~~~~~~~p~fi~~~P~~~~p 224 (322)
T cd00776 154 LVN-QL-----NRELLKPLEPFPRITYDEAIELLREKGVE---EEVKWGEDLSTEHERLLGEIVKGDPVFVTDYPKEIKP 224 (322)
T ss_pred hhh-cc-----CcccccCCCCceEEEHHHHHHHHHHcCCC---CCCCccchhcHHHHHHHHHHhCCCcEEEECCccccCC
Confidence 641 11 11122346799999999999998875321 2357999999999999998765899999999999999
Q ss_pred CccccCC-CCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHH
Q 006717 534 FYVRLND-DGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLF 612 (634)
Q Consensus 534 Fy~~~~~-d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ 612 (634)
||++.++ ++++++|||||+|||+||+||++|++++++|.+++++.|+++..|+|||+|++||+|||||||||||||+|+
T Consensus 225 fy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~ 304 (322)
T cd00776 225 FYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMW 304 (322)
T ss_pred ceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHH
Confidence 9987664 558999999999755999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcCccccCCCCCC
Q 006717 613 TTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 613 ltg~~nIRdVi~FPr~~~ 630 (634)
+||.+|||||++|||+|+
T Consensus 305 ~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 305 LLGLDNIREAILFPRDPK 322 (322)
T ss_pred HcCCCchheEeecCCCCC
Confidence 999999999999999985
No 25
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.5e-82 Score=711.97 Aligned_cols=380 Identities=21% Similarity=0.379 Sum_probs=306.6
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCC--CCCCCCCCcEEEEEEEEecCCCC------CCceEEEEEeeeEEEecCCCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVS--PSKIRPIGTCLMVEGVLKQPSVQ------GKHAVELKVEKILHIGTVDHDKY 208 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~--~~~~l~~Gs~V~V~G~l~~~~~~------~~q~vEL~~~~i~vlg~~~~~~y 208 (634)
+++|++|||++|. +|||++..... ..+.|+.||+|.|+|+|.+++.+ .+|++||.+++|++|++|. ++
T Consensus 34 ~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~--~l 109 (588)
T PRK00476 34 GLIFIDLRDREGI--VQVVFDPDAEAFEVAESLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK--TL 109 (588)
T ss_pred CeEEEEEEeCCce--EEEEEeCCHHHHHHHhCCCCCCEEEEEEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC--CC
Confidence 8999999999997 99999762111 23579999999999999987632 2688999999999999996 45
Q ss_pred CCCC--C-CCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeecccccc
Q 006717 209 PLSR--K-RLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKR 285 (634)
Q Consensus 209 Pl~k--k-~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~ 285 (634)
|++. + ..+.++|+++||||+|++.+++++|+||.+++++|+||.++||+||+||+|+.++||||++ |.|.+.
T Consensus 110 P~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~---- 184 (588)
T PRK00476 110 PFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGARD-YLVPSR---- 184 (588)
T ss_pred CCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCCCCCcc-ceeccc----
Confidence 5542 2 3578889999999999999999999999999999999999999999999999999999887 876421
Q ss_pred ccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCccccc
Q 006717 286 EKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFS 365 (634)
Q Consensus 286 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
T Consensus 185 -------------------------------------------------------------------------------- 184 (588)
T PRK00476 185 -------------------------------------------------------------------------------- 184 (588)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHH
Q 006717 366 EDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWI 444 (634)
Q Consensus 366 ~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~v 444 (634)
-|++..+||+||||||||+| ++|++||||||||||||+++|.||+ |||||||||+|+|++|+|+++|+||+++++.+
T Consensus 185 -~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~ 262 (588)
T PRK00476 185 -VHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEV 262 (588)
T ss_pred -ccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 13444568999999999985 5689999999999999999988777 99999999999999999999999999999887
Q ss_pred HhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHH--------------------H--------Hh---cc-
Q 006717 445 LEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKAL--------------------E--------KV---TE- 492 (634)
Q Consensus 445 l~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L--------------------~--------~~---~~- 492 (634)
.+. + ++.||+||||.||++.. + +. ++
T Consensus 263 ~~~---~-------------------~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~ 320 (588)
T PRK00476 263 LGV---D-------------------LPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGR 320 (588)
T ss_pred hCc---c-------------------CCCCceEEEHHHHHHHHCCCCCcccCCceehhHHHHhccCCchhhhhhhccCCe
Confidence 631 0 24589999999998751 0 00 00
Q ss_pred --------------cc-cc----cc----------c-----cccc----ccChHH-HH----------------------
Q 006717 493 --------------KI-FE----TK----------L-----EWGV----ALTAEH-LS---------------------- 511 (634)
Q Consensus 493 --------------~~-f~----~~----------~-----~~G~----dL~~e~-Er---------------------- 511 (634)
.+ ++ .. . +|.. .+..+. +.
T Consensus 321 VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~ 400 (588)
T PRK00476 321 VKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKV 400 (588)
T ss_pred EEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHH
Confidence 00 00 00 0 0100 011111 00
Q ss_pred ----------hHHhhh--C----CccEEEEeCCCC------------CCCCccccCC--------CC--CceEEEEEeec
Q 006717 512 ----------YLADEI--Y----KRPVIVYNYPKA------------VKPFYVRLND--------DG--NTVAAFDMVVP 553 (634)
Q Consensus 512 ----------~L~e~~--~----~~PvfVtdyP~~------------~kPFy~~~~~--------d~--~~~~~fDLlvP 553 (634)
.|++.. . .+++||+|||.. ++||+|+..+ || -.+.+|||++
T Consensus 401 v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~- 479 (588)
T PRK00476 401 VNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVL- 479 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEE-
Confidence 122211 1 268999999984 7999998654 33 2458999999
Q ss_pred CCeEEechhhhHHhHHHHHHHHHHcCCCcc----ChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 554 KGGTVITGSQNEERIDMLNTRIKELGLPRE----QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 554 ~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~----~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
||.||+|||+|+|+++.+++.++..|++++ .|+|||+|++||+|||||||||+|||+|+|+|.+||||||+||++.
T Consensus 480 ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdvi~fp~~~ 559 (588)
T PRK00476 480 NGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQ 559 (588)
T ss_pred eeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCccHHheeeccCCC
Confidence 799999999999999999999999999876 5899999999999999999999999999999999999999999986
Q ss_pred C
Q 006717 630 G 630 (634)
Q Consensus 630 ~ 630 (634)
.
T Consensus 560 ~ 560 (588)
T PRK00476 560 S 560 (588)
T ss_pred C
Confidence 4
No 26
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.5e-82 Score=709.89 Aligned_cols=383 Identities=22% Similarity=0.376 Sum_probs=305.9
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCC-C---CCCCCCCCcEEEEEEEEecCCC------CCCceEEEEEeeeEEEecCC
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLV-S---PSKIRPIGTCLMVEGVLKQPSV------QGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~---~~~~l~~Gs~V~V~G~l~~~~~------~~~q~vEL~~~~i~vlg~~~ 204 (634)
+|+++|++|||++|. +|||++.+.. . ..+.|+.||+|.|+|+|..+|. -.+|++||.+++|+||++|.
T Consensus 87 ~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~ 164 (652)
T PLN02903 87 MGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANRLRNEYVVAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVT 164 (652)
T ss_pred CCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhcCCCCCEEEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCC
Confidence 458999999999997 9999986531 1 2357999999999999997642 12488999999999999994
Q ss_pred CCCCC--CCC-----CCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhh-CCcEEeeCCeeecCCCCCCCcce
Q 006717 205 HDKYP--LSR-----KRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQN-HGFLYVQVPVITTTDSEGFSEKF 276 (634)
Q Consensus 205 ~~~yP--l~k-----k~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~-~gF~eV~TPiLt~s~~EGa~e~F 276 (634)
.++| +.. ..++.++++++||||+|++.++++||+||.|++++|+||.+ +||+||+||+|+.++||||++.|
T Consensus 165 -~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~ 243 (652)
T PLN02903 165 -KSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYL 243 (652)
T ss_pred -CCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccE
Confidence 2455 443 23689999999999999999999999999999999999997 99999999999999999999855
Q ss_pred eeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCC
Q 006717 277 QVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPS 356 (634)
Q Consensus 277 ~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (634)
... .
T Consensus 244 v~~-~--------------------------------------------------------------------------- 247 (652)
T PLN02903 244 VPS-R--------------------------------------------------------------------------- 247 (652)
T ss_pred Eee-e---------------------------------------------------------------------------
Confidence 321 0
Q ss_pred cCCCcccccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHH
Q 006717 357 VKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADD 435 (634)
Q Consensus 357 ~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~ 435 (634)
...+..+||+||||||||+| ++|++||||||||||||++++.|| ||||||||||+|+|++|+|+++|+
T Consensus 248 ----------~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~ 316 (652)
T PLN02903 248 ----------VQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLNED 316 (652)
T ss_pred ----------cCCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-cceeeeeeeecCCCHHHHHHHHHH
Confidence 00133458999999999985 579999999999999999998777 999999999999999999999999
Q ss_pred HHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHH--------------------H-------
Q 006717 436 YFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKAL--------------------E------- 488 (634)
Q Consensus 436 Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L--------------------~------- 488 (634)
||+++++.+++. + +..||+||||.||++.. .
T Consensus 317 li~~v~~~~~~~------------~----------~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f 374 (652)
T PLN02903 317 LIRQVFKEIKGV------------Q----------LPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVF 374 (652)
T ss_pred HHHHHHHHHhCC------------C----------CCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhh
Confidence 999999876531 1 23589999999999752 0
Q ss_pred -Hh---cc----------c-----cc----c---------------ccc----cc-c---c--ccChHH-HH--------
Q 006717 489 -KV---TE----------K-----IF----E---------------TKL----EW-G---V--ALTAEH-LS-------- 511 (634)
Q Consensus 489 -~~---~~----------~-----~f----~---------------~~~----~~-G---~--dL~~e~-Er-------- 511 (634)
.. ++ . .+ + ... .| | . .|+.+. +.
T Consensus 375 ~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~ 454 (652)
T PLN02903 375 AGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAG 454 (652)
T ss_pred hhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCC
Confidence 00 00 0 00 0 000 00 0 0 011111 00
Q ss_pred ------------------------hHHhhh--C----CccEEEEeCCCC------------CCCCccccCCCC-----Cc
Q 006717 512 ------------------------YLADEI--Y----KRPVIVYNYPKA------------VKPFYVRLNDDG-----NT 544 (634)
Q Consensus 512 ------------------------~L~e~~--~----~~PvfVtdyP~~------------~kPFy~~~~~d~-----~~ 544 (634)
.|++.. . ..++||+|||.. ++||.|+..+|- -.
T Consensus 455 ~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~ 534 (652)
T PLN02903 455 PGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSAR 534 (652)
T ss_pred CCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhh
Confidence 122211 1 268999999994 899999866542 13
Q ss_pred eEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCcc----ChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcC
Q 006717 545 VAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPRE----QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVR 620 (634)
Q Consensus 545 ~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~----~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIR 620 (634)
+.+|||++ ||.||+|||+|+|+++.+++.++..|++++ .|.|||+|++||+|||||||+|||||+|+|+|.+|||
T Consensus 535 a~~YDLVl-NG~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~Ir 613 (652)
T PLN02903 535 ALAYDMVY-NGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIR 613 (652)
T ss_pred hhcceeEe-cceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchH
Confidence 56899999 899999999999999999999999999875 4899999999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 006717 621 DAIPFPRSLG 630 (634)
Q Consensus 621 dVi~FPr~~~ 630 (634)
|||+||++..
T Consensus 614 dviaFPKt~~ 623 (652)
T PLN02903 614 DVIAFPKTTT 623 (652)
T ss_pred heEecCCCCC
Confidence 9999999864
No 27
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=2.1e-82 Score=673.57 Aligned_cols=319 Identities=25% Similarity=0.470 Sum_probs=287.4
Q ss_pred CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCc----ceeeeccccccccCCC
Q 006717 215 LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSE----KFQVTTLFDKREKEGP 290 (634)
Q Consensus 215 ~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e----~F~Vtt~~~~~~~~~~ 290 (634)
.+.++++++|||++|++..+++||+||.|++++|+||.++||+||+||+|++++|+|.+. +|.+
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~------------ 75 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQ------------ 75 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccc------------
Confidence 478999999999999999999999999999999999999999999999999999886543 2221
Q ss_pred CcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccC
Q 006717 291 KTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFS 370 (634)
Q Consensus 291 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg 370 (634)
++.+|||
T Consensus 76 -------------------------------------------------------------------------~~~~~~~ 82 (335)
T PRK06462 76 -------------------------------------------------------------------------ISIDFYG 82 (335)
T ss_pred -------------------------------------------------------------------------cccccCC
Confidence 2457899
Q ss_pred ceeeeccchHHHHHHHHcccCceEEEccccccCcCCC--CCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 006717 371 RQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKES--SKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDC 448 (634)
Q Consensus 371 ~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T--~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~ 448 (634)
+++||++|||||||++++|++|||+||||||||++++ +||||||||||||++|+|++|+|+++|+||+++++.+++++
T Consensus 83 ~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~ 162 (335)
T PRK06462 83 VEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEH 162 (335)
T ss_pred CceeeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988889999999999999999987 79999999999999999999999999999999999999999
Q ss_pred ccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCC
Q 006717 449 SKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYP 528 (634)
Q Consensus 449 ~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP 528 (634)
.+++.+++..+. .++.||+||||.||+++|+..+. ...++.+++.++|++|.+.+ ++||||+|||
T Consensus 163 ~~~i~~~~~~~~---------~~~~p~~rit~~eA~~~l~~~~~-----~~~~~~~l~~~~E~~l~~~~-~~p~fi~~yP 227 (335)
T PRK06462 163 EDELEFFGRDLP---------HLKRPFKRITHKEAVEILNEEGC-----RGIDLEELGSEGEKSLSEHF-EEPFWIIDIP 227 (335)
T ss_pred HHHHHhcCCccc---------cCCCCCeEEEHHHHHHHHHhcCC-----CcchHHHHhHHHHHHHHHHh-CCCEEEECCC
Confidence 888877654321 13579999999999999877532 13457789999999998754 8899999999
Q ss_pred CCCCCCccccC-CCCCceEEEEEeec-CCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccH
Q 006717 529 KAVKPFYVRLN-DDGNTVAAFDMVVP-KGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGF 606 (634)
Q Consensus 529 ~~~kPFy~~~~-~d~~~~~~fDLlvP-~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGi 606 (634)
.+++|||++.+ +++++++|||||+| +++||+||+||+++|+++.++++++|++++.|+|||+|++||+||||||||||
T Consensus 228 ~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGi 307 (335)
T PRK06462 228 KGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGV 307 (335)
T ss_pred hhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcH
Confidence 99999999865 45688999999999 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 607 DLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 607 ERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
|||+|++||.+|||||++|||++|+..
T Consensus 308 dRLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 308 ERLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred HHHHHHHcCCCchheeeeccCCCCCCC
Confidence 999999999999999999999999864
No 28
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=7.7e-81 Score=706.45 Aligned_cols=382 Identities=19% Similarity=0.347 Sum_probs=302.4
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCCC-----CCCCCCCCcEEEEEEEEecCCCC------CCceEEEEEeeeEEEecC
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLVS-----PSKIRPIGTCLMVEGVLKQPSVQ------GKHAVELKVEKILHIGTV 203 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-----~~~~l~~Gs~V~V~G~l~~~~~~------~~q~vEL~~~~i~vlg~~ 203 (634)
+|+++|++|||+++. +|||++.+... ..+.|+.||+|.|+|+|+.++.+ .++++||.++++.+|++|
T Consensus 33 ~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a 110 (706)
T PRK12820 33 HGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAASLRAEFCVALQGEVQKRLEETENPHIETGDIEVFVRELSILAAS 110 (706)
T ss_pred CCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecC
Confidence 348999999999997 99999865321 23579999999999999986422 248899999999999999
Q ss_pred CCCCCCCCCCC------------CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCC
Q 006717 204 DHDKYPLSRKR------------LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEG 271 (634)
Q Consensus 204 ~~~~yPl~kk~------------~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EG 271 (634)
.+.+||+.++. .+.++|+++||||+|++.++++||+||.+++++|+||.++||+||+||+|+.++|||
T Consensus 111 ~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eG 190 (706)
T PRK12820 111 EALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEG 190 (706)
T ss_pred CCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCC
Confidence 64456665542 357889999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 006717 272 FSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKL 351 (634)
Q Consensus 272 a~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (634)
|++.| +++
T Consensus 191 Ar~~~-~p~----------------------------------------------------------------------- 198 (706)
T PRK12820 191 ARDYL-VPS----------------------------------------------------------------------- 198 (706)
T ss_pred CcceE-Eee-----------------------------------------------------------------------
Confidence 98743 321
Q ss_pred ccCCCcCCCcccccccccCce-eeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHH
Q 006717 352 LQAPSVKTDKVNFSEDFFSRQ-TYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDA 429 (634)
Q Consensus 352 ~~~~~~~~~~~~~~~~ffg~~-~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dl 429 (634)
.++... +||+||||||||+| ++|++||||||||||||++++.|| ||||||||||+|+|++|+
T Consensus 199 ---------------~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dv 262 (706)
T PRK12820 199 ---------------RIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFI 262 (706)
T ss_pred ---------------ecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC-ccccccceeeccCCHHHH
Confidence 112222 35999999999995 579999999999999999987665 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHH----------------------
Q 006717 430 MKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKAL---------------------- 487 (634)
Q Consensus 430 m~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L---------------------- 487 (634)
|+++|+||+++++ +. + ++ +..||+||||.||++..
T Consensus 263 m~l~E~li~~v~~-~~----------~--~~----------~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~ 319 (706)
T PRK12820 263 FELIEELTARMFA-IG----------G--IA----------LPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFEN 319 (706)
T ss_pred HHHHHHHHHHHHH-hc----------C--cC----------CCCCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhcc
Confidence 9999999999885 11 0 01 34699999999999752
Q ss_pred ------HH---hcc-----------ccc-----cc--c-----------ccc------cc------ccChHHHH------
Q 006717 488 ------EK---VTE-----------KIF-----ET--K-----------LEW------GV------ALTAEHLS------ 511 (634)
Q Consensus 488 ------~~---~~~-----------~~f-----~~--~-----------~~~------G~------dL~~e~Er------ 511 (634)
+. .++ ..+ +. . ..| +. .+..+...
T Consensus 320 ~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (706)
T PRK12820 320 TRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRF 399 (706)
T ss_pred CCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHh
Confidence 00 000 000 00 0 000 00 01111100
Q ss_pred ----------------------------hHHhhh------CCccEEEEeCCC-----------CCCCCccccCCC-----
Q 006717 512 ----------------------------YLADEI------YKRPVIVYNYPK-----------AVKPFYVRLNDD----- 541 (634)
Q Consensus 512 ----------------------------~L~e~~------~~~PvfVtdyP~-----------~~kPFy~~~~~d----- 541 (634)
.|++.. ...|+||+|||. .++||+|+..+|
T Consensus 400 ~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~ 479 (706)
T PRK12820 400 HAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGD 479 (706)
T ss_pred CCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhc
Confidence 011111 126899999999 479999986543
Q ss_pred ---CC--ceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccC----hHHHHHHHhcCCCCcceeeccHHHHHHH
Q 006717 542 ---GN--TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQ----YEWYLDLRRHGTVKHSGFSFGFDLMVLF 612 (634)
Q Consensus 542 ---~~--~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~----~~wYLda~kyG~PPhgGfGLGiERLvm~ 612 (634)
|. .+.+|||++ ||.||+|||+|+|+++.+++.++..|++++. |.+||+|++||+|||||+|+|||||+|+
T Consensus 480 ~~~p~~~~~~~YDLV~-nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~ 558 (706)
T PRK12820 480 IEELLDLRSRAYDLVV-NGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSM 558 (706)
T ss_pred cCChHHhhhheeeEEe-cceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeccHHHHHHH
Confidence 21 357899999 7999999999999999999999999998753 7899999999999999999999999999
Q ss_pred hcCCCCcCccccCCCCCC
Q 006717 613 TTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 613 ltg~~nIRdVi~FPr~~~ 630 (634)
|+|.+||||||+||++..
T Consensus 559 l~~~~sirdviaFPK~~~ 576 (706)
T PRK12820 559 ILQTPSIREVIAFPKNRS 576 (706)
T ss_pred HcCCccHHHhcccCCCCC
Confidence 999999999999999864
No 29
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-80 Score=671.80 Aligned_cols=384 Identities=21% Similarity=0.373 Sum_probs=314.2
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCC----CCCCCCCCCcEEEEEEEEecCCCC------CCceEEEEEeeeEEEecCC
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLV----SPSKIRPIGTCLMVEGVLKQPSVQ------GKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~----~~~~~l~~Gs~V~V~G~l~~~~~~------~~q~vEL~~~~i~vlg~~~ 204 (634)
+|+++||+|||.+|+ +|||++.+.. ..++.++.++||.|+|+|...+++ .+++|||++++|+|++.|.
T Consensus 30 ~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~ 107 (585)
T COG0173 30 HGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASK 107 (585)
T ss_pred cCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHhcCceEEEEEEEEEEecCccccCCCCCcceEEEEeeeEEEEecCC
Confidence 458999999999998 9999988422 135679999999999999988753 4799999999999999997
Q ss_pred CCCCCCCCC-CCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeecccc
Q 006717 205 HDKYPLSRK-RLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFD 283 (634)
Q Consensus 205 ~~~yPl~kk-~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~ 283 (634)
+.++++... ..+.|.+++|||||||++.++..+++||+++.++|+||.++||+||+||+||.|++|||.+ |.|+++..
T Consensus 108 ~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPEGARD-fLVPSRv~ 186 (585)
T COG0173 108 TLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGARD-FLVPSRVH 186 (585)
T ss_pred CCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCCccccc-cccccccC
Confidence 545555443 5689999999999999999999999999999999999999999999999999999999998 78865310
Q ss_pred ccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCccc
Q 006717 284 KREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVN 363 (634)
Q Consensus 284 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (634)
T Consensus 187 -------------------------------------------------------------------------------- 186 (585)
T COG0173 187 -------------------------------------------------------------------------------- 186 (585)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCceeeeccchHHHHHH-HHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 364 FSEDFFSRQTYLTVSGRLHLES-YACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 364 ~~~~ffg~~~yLtvSpQL~le~-la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
...| +.|.||||||+|. |++||+|+|||++|||+|+.+ ...+|||||||.||+|.+-+|+|+++|+|++++++
T Consensus 187 -~G~F----YALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlR-aDRQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~ 260 (585)
T COG0173 187 -PGKF----YALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLR-ADRQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFK 260 (585)
T ss_pred -CCce----eecCCCHHHHHHHHHHhcccceeeeeeeecccccc-cccCCcceeEeEEeecCCHHHHHHHHHHHHHHHHH
Confidence 1235 4899999999999 578999999999999999997 67779999999999999999999999999999999
Q ss_pred HHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHH-------------Hh------------------c
Q 006717 443 WILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALE-------------KV------------------T 491 (634)
Q Consensus 443 ~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~-------------~~------------------~ 491 (634)
.+.+- + +..||+||||.||++..- +. .
T Consensus 261 ~~~~i------------~----------l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~ 318 (585)
T COG0173 261 EVKGI------------E----------LKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANG 318 (585)
T ss_pred HhcCC------------c----------cCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcC
Confidence 76542 1 456999999999998520 00 0
Q ss_pred c----------ccc-----c----c-------cccc---ccc---------cChHH-HH---------------------
Q 006717 492 E----------KIF-----E----T-------KLEW---GVA---------LTAEH-LS--------------------- 511 (634)
Q Consensus 492 ~----------~~f-----~----~-------~~~~---G~d---------L~~e~-Er--------------------- 511 (634)
+ ..+ + + -..| ..+ +..+. +.
T Consensus 319 ~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~ 398 (585)
T COG0173 319 GRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKK 398 (585)
T ss_pred CeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHH
Confidence 0 000 0 0 0001 000 11110 00
Q ss_pred -----------hHHhhh------CCccEEEEeCCCC------------CCCCccccCCC-------CC--ceEEEEEeec
Q 006717 512 -----------YLADEI------YKRPVIVYNYPKA------------VKPFYVRLNDD-------GN--TVAAFDMVVP 553 (634)
Q Consensus 512 -----------~L~e~~------~~~PvfVtdyP~~------------~kPFy~~~~~d-------~~--~~~~fDLlvP 553 (634)
.+++.+ ..+|+||+|||.. ++||+|++.++ +. .+.+|||++
T Consensus 399 ~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVl- 477 (585)
T COG0173 399 VVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVL- 477 (585)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEe-
Confidence 012111 1379999999984 79999997643 22 357899999
Q ss_pred CCeEEechhhhHHhHHHHHHHHHHcCCCcc----ChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 554 KGGTVITGSQNEERIDMLNTRIKELGLPRE----QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 554 ~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~----~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
||.||+|||.|+|+.+.+++.++..|++++ .|..+|+|++||.|||||+++|||||+|+|+|.+||||||+||++.
T Consensus 478 NG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~ 557 (585)
T COG0173 478 NGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQ 557 (585)
T ss_pred ccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCc
Confidence 899999999999999999999999999987 4788999999999999999999999999999999999999999986
Q ss_pred C
Q 006717 630 G 630 (634)
Q Consensus 630 ~ 630 (634)
.
T Consensus 558 ~ 558 (585)
T COG0173 558 Q 558 (585)
T ss_pred c
Confidence 4
No 30
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=2.7e-81 Score=664.00 Aligned_cols=316 Identities=34% Similarity=0.626 Sum_probs=267.9
Q ss_pred ChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccc
Q 006717 216 PMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKD 295 (634)
Q Consensus 216 ~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~ 295 (634)
+.|+++++||||+|++..+++||+||.|++++|+||.++||+||+||+|++++|||++++|.|.+
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~--------------- 65 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDS--------------- 65 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEE---------------
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCcccccccccc---------------
Confidence 46899999999999999999999999999999999999999999999999999999999998852
Q ss_pred cccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeee
Q 006717 296 IEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYL 375 (634)
Q Consensus 296 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yL 375 (634)
...+|||+++||
T Consensus 66 --------------------------------------------------------------------~~~~~~~~~~~L 77 (335)
T PF00152_consen 66 --------------------------------------------------------------------EPGKYFGEPAYL 77 (335)
T ss_dssp --------------------------------------------------------------------STTEETTEEEEE
T ss_pred --------------------------------------------------------------------chhhhcccceec
Confidence 123689999999
Q ss_pred ccchHHHHHHHHc-ccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhh
Q 006717 376 TVSGRLHLESYAC-ALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEF 454 (634)
Q Consensus 376 tvSpQL~le~la~-g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~ 454 (634)
++|||||||++++ |++|||+||||||||+++|.||||||||||||++|+|++++|+++|+||+++++++.++.. +. .
T Consensus 78 ~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~-~~-~ 155 (335)
T PF00152_consen 78 TQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAK-EL-S 155 (335)
T ss_dssp -SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHH-HH-H
T ss_pred CcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCc-cc-c
Confidence 9999999999765 6999999999999999999999999999999999999999999999999999999986621 11 1
Q ss_pred hccccchhhhhhhccccCCCCceeeHHHHHHHHHHhccc-cc-----------ccccccccccChHHHHhHHhhhCCccE
Q 006717 455 VSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEK-IF-----------ETKLEWGVALTAEHLSYLADEIYKRPV 522 (634)
Q Consensus 455 ~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~-~f-----------~~~~~~G~dL~~e~Er~L~e~~~~~Pv 522 (634)
+ . ..+..||+|++|.||++++...... .+ +....+|.++..++|++|++.....|+
T Consensus 156 ~--~----------~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~p~ 223 (335)
T PF00152_consen 156 L--N----------IDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTDPV 223 (335)
T ss_dssp T--C----------EESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSSEE
T ss_pred c--c----------ccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCCcE
Confidence 1 1 1245679999999999998765311 11 011234667888899999887889999
Q ss_pred EEEeCCCCCCCCccccCCCC-CceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccC----hHHHHHHHhcCCC
Q 006717 523 IVYNYPKAVKPFYVRLNDDG-NTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQ----YEWYLDLRRHGTV 597 (634)
Q Consensus 523 fVtdyP~~~kPFy~~~~~d~-~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~----~~wYLda~kyG~P 597 (634)
||+|||..++||||+.++++ ++++|||||+ +|+||+||++|++++++|.+++++.|++.+. |+|||+|++||+|
T Consensus 224 fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~-~g~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~p 302 (335)
T PF00152_consen 224 FITDYPAEQSPFYKPPNDDDPGVAERFDLYI-PGGEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMP 302 (335)
T ss_dssp EEEEEBGGGSTTTBBBSSSTTTBBSEEEEEE-TTEEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--
T ss_pred EEEecccccCcccccccccccccccceeEEE-eCEEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCc
Confidence 99999999999999998876 8999999999 5899999999999999999999999988777 9999999999999
Q ss_pred CcceeeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
||||||||||||+|++||.+|||||++|||++
T Consensus 303 p~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~ 334 (335)
T PF00152_consen 303 PHGGFGLGLERLVMLLLGLKNIRDVIPFPRDR 334 (335)
T ss_dssp SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT
T ss_pred ccCcceehHHHHHHHHcCCCcHHheecCCCCC
Confidence 99999999999999999999999999999986
No 31
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-80 Score=652.51 Aligned_cols=429 Identities=18% Similarity=0.274 Sum_probs=348.3
Q ss_pred hhhhhhcc-ccccee-eeeecCCCCCcccccccceeeeccCCCCCCC-ceEEEEEEcCccceeEEEEEeCCCC----CC-
Q 006717 92 CVEILQSR-IPFFRT-IIRVLGGSAGISNNVPLREKLEALVPKPPPP-STVFLQVSDGSCVASLQVVVESTLV----SP- 163 (634)
Q Consensus 92 ~~~~~qs~-~~~fr~-~~~v~~~~~~~~~~V~vrGRi~~~R~~~~~G-~l~Fl~l~Dgs~~~~lQvV~~~~~~----~~- 163 (634)
|-.+..|- ++.|.+ |.++..+++...+.|+|+|||+++|. .| |++|++|++++.. |||+++.+.. .|
T Consensus 77 phkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~---sGsKL~Fydl~~~g~k--lQvm~~~~~~~~~~~F~ 151 (560)
T KOG1885|consen 77 PHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRE---SGSKLVFYDLHGDGVK--LQVMANAKKITSEEDFE 151 (560)
T ss_pred cchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeec---cCCceEEEEEecCCeE--EEEEEehhhcCCHHHHH
Confidence 55555554 477887 55677777777788999999999998 55 9999999988664 9999987652 12
Q ss_pred --CCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCCCCCC---Chhhccccceeecc-cchhhHHH
Q 006717 164 --SKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLSRKRL---PMDMLRDSAHFRPR-TTTVASVM 237 (634)
Q Consensus 164 --~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~~---~~e~lr~~rhLr~R-t~~~~av~ 237 (634)
.+.|+.||+|.|.|.+.++. +++++|.+.++.+|++|. .|||.+.+ +.|++.++||||+. ++.++..|
T Consensus 152 ~~~~~lkrGDiig~~G~pgrt~---~gELSi~~~~~~lLspcL---h~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f 225 (560)
T KOG1885|consen 152 QLHKFLKRGDIIGVSGYPGRTK---SGELSIIPNEIILLSPCL---HMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRF 225 (560)
T ss_pred HHHhhhhccCEEeeecCCCcCC---CceEEEeecchheecchh---ccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHH
Confidence 46799999999999999887 679999999999999996 67775543 57999999999998 55789999
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHH
Q 006717 238 RIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEE 317 (634)
Q Consensus 238 riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 317 (634)
++|+.|+..||.||+++||+||+|||+...++++.+.+|. |
T Consensus 226 ~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFI-T-------------------------------------- 266 (560)
T KOG1885|consen 226 RIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFI-T-------------------------------------- 266 (560)
T ss_pred HHHHHHHHHHHHHhhhcCceEecchhhccccCccccCcee-e--------------------------------------
Confidence 9999999999999999999999999999999888899995 3
Q ss_pred HhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEEE
Q 006717 318 LKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYSF 396 (634)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYeI 396 (634)
+++-++.++||+++|+||+|+|+ .|++|||||
T Consensus 267 -----------------------------------------------~hndldm~LylRiAPEL~lK~LvVGGldrVYEI 299 (560)
T KOG1885|consen 267 -----------------------------------------------HHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEI 299 (560)
T ss_pred -----------------------------------------------cccccCcceeeeechHHHHHHHHhccHHHHHHH
Confidence 12347889999999999999976 589999999
Q ss_pred ccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCc
Q 006717 397 GPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFE 476 (634)
Q Consensus 397 gp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~ 476 (634)
|+.||||++| .+||||||.||+||||+||+|+|+++|+|++.+++.+.+++. +.+.....+. ..++-.++.||+
T Consensus 300 Gr~FRNEGID-lTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~--i~y~p~~~~~---~~~eldf~~pfr 373 (560)
T KOG1885|consen 300 GRQFRNEGID-LTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYK--ITYHPNGPEE---PELELDFTRPFR 373 (560)
T ss_pred HHHhhhcCcc-cccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCcee--EeecCCCCCC---CceeeeccCCee
Confidence 9999999996 899999999999999999999999999999999999988763 4443321111 134455889999
Q ss_pred eeeHHHHHHHHHHhcccccc----------------cccccccccC----hHH-HHhHH----hhhCCccEEEEeCCCCC
Q 006717 477 KITYTEAVKALEKVTEKIFE----------------TKLEWGVALT----AEH-LSYLA----DEIYKRPVIVYNYPKAV 531 (634)
Q Consensus 477 rity~EAi~~L~~~~~~~f~----------------~~~~~G~dL~----~e~-Er~L~----e~~~~~PvfVtdyP~~~ 531 (634)
||++-+.++. ..+.+|. .....+.++. ..+ -..|+ |+.+.+|+||.|||..+
T Consensus 374 ri~mi~~L~k---~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~cvnPTFi~~hP~im 450 (560)
T KOG1885|consen 374 RIEMIEELEK---ELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTCVNPTFIIDHPQIM 450 (560)
T ss_pred eeeHHHHHHH---HhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccccCCCeeEcCCchhc
Confidence 9999998763 1111110 0000011111 000 11233 34456899999999999
Q ss_pred CCCccccCCCCCceEEEEEeecCCeEEechh--------hhHHhHHHHHHHHHHcCCCccC--hHHHHHHHhcCCCCcce
Q 006717 532 KPFYVRLNDDGNTVAAFDMVVPKGGTVITGS--------QNEERIDMLNTRIKELGLPREQ--YEWYLDLRRHGTVKHSG 601 (634)
Q Consensus 532 kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGs--------qRe~r~e~L~~~~~~~gl~~~~--~~wYLda~kyG~PPhgG 601 (634)
+|+++.+..+++.++|||||+ +|.||||++ || +||++ |.+.+..|.|+.. ++.|+.|++||+||+||
T Consensus 451 SPLAK~hrs~~glteRFElFi-~~kEicNAYtElNdP~~Qr-~rFe~-Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgG 527 (560)
T KOG1885|consen 451 SPLAKYHRSKAGLTERFELFI-AGKEICNAYTELNDPVDQR-QRFEQ-QARDKDAGDDEAQMVDEDFCTALEYGLPPTGG 527 (560)
T ss_pred CccccccccccchhhHHHHhh-hhHHHhhhhhhhcCHHHHH-HHHHH-HHHHhhcCCcccccccHHHHHHHHcCCCCCCc
Confidence 999999988889999999999 899999995 55 56766 4455778888654 79999999999999999
Q ss_pred eeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 602 FSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 602 fGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
||||||||+|+||+..|||||++||-..
T Consensus 528 wGmGIDRL~MllTds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 528 WGMGIDRLVMLLTDSNNIREVLLFPAMK 555 (560)
T ss_pred cccchhhhhhhhcCCcchhheeeccccC
Confidence 9999999999999999999999999765
No 32
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=5.5e-73 Score=600.27 Aligned_cols=299 Identities=21% Similarity=0.347 Sum_probs=249.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHh
Q 006717 230 TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIK 309 (634)
Q Consensus 230 t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 309 (634)
++..++++|+||.+++++|+||.++||+||+||+|+++.++|++++|.+.
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~------------------------------ 50 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH------------------------------ 50 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec------------------------------
Confidence 35678999999999999999999999999999999999888788999652
Q ss_pred hhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-c
Q 006717 310 EKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-C 388 (634)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~ 388 (634)
.+||++++||++|||||||+|+ +
T Consensus 51 --------------------------------------------------------~~~~~~~~yL~~Spql~~k~ll~~ 74 (329)
T cd00775 51 --------------------------------------------------------HNALDMDLYLRIAPELYLKRLIVG 74 (329)
T ss_pred --------------------------------------------------------cCCCCcceeeccCHHHHHHHHHhc
Confidence 1478999999999999999964 6
Q ss_pred ccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhc
Q 006717 389 ALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQ 468 (634)
Q Consensus 389 g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~ 468 (634)
|++|||+||||||||++ ++||||||||||||++|+|++|+|+++|+||+++++++.+.+ ++++.+..++
T Consensus 75 g~~~vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~--~~~~~~~~~~-------- 143 (329)
T cd00775 75 GFERVYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKT--KIEYGGKELD-------- 143 (329)
T ss_pred CCCcEEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCCcccc--------
Confidence 99999999999999999 589999999999999999999999999999999999998764 4444433221
Q ss_pred cccCCCCceeeHHHHHHHHHHhccc--------------------ccccccccccccChHHHHhHHhhhCCccEEEEeCC
Q 006717 469 SVISSSFEKITYTEAVKALEKVTEK--------------------IFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYP 528 (634)
Q Consensus 469 ~~~~~pf~rity~EAi~~L~~~~~~--------------------~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP 528 (634)
++.||+||||.||++.+...... ++.....|+..|...++.+ +++.+++|+||+|||
T Consensus 144 --~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-ve~~~~~p~fi~~yP 220 (329)
T cd00775 144 --FTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEF-VEPTLIQPTFIIDHP 220 (329)
T ss_pred --CCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-hccccCCCEEEECCC
Confidence 34699999999999875321000 0000112333343344444 345567999999999
Q ss_pred CCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHH------cCCCccC--hHHHHHHHhcCCCCcc
Q 006717 529 KAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE------LGLPREQ--YEWYLDLRRHGTVKHS 600 (634)
Q Consensus 529 ~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~------~gl~~~~--~~wYLda~kyG~PPhg 600 (634)
+.++||||..++|+++++|||||+ +|.||+||++|+++++++.+++++ .|.++.. ++|||++++||+||||
T Consensus 221 ~~~~~f~~~~~~~~~~~~rfdl~~-~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~ 299 (329)
T cd00775 221 VEISPLAKRHRSNPGLTERFELFI-CGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTG 299 (329)
T ss_pred hHhCcCcCcCCCCCCeeEEEEeEE-CCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCC
Confidence 999999998778889999999999 589999999999999988888765 3666543 6899999999999999
Q ss_pred eeeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 601 GFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 601 GfGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
|||||||||+|+++|.+|||||++|||++
T Consensus 300 G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 300 GLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred cEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 99999999999999999999999999986
No 33
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=1.3e-70 Score=576.47 Aligned_cols=277 Identities=21% Similarity=0.333 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeeCCeeecC-CCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhH
Q 006717 237 MRIRSSLTHATHTFFQNHGFLYVQVPVITTT-DSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKV 315 (634)
Q Consensus 237 ~riRs~l~~air~ff~~~gF~eV~TPiLt~s-~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 315 (634)
+++||.|++++|+||.++||+||+||+|+++ .+||++++|.+..
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y----------------------------------- 45 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEF----------------------------------- 45 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeec-----------------------------------
Confidence 5899999999999999999999999999998 5788999997531
Q ss_pred HHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCceE
Q 006717 316 EELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNVY 394 (634)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVY 394 (634)
+..+++++++||+||||||||++ ++|++|||
T Consensus 46 ------------------------------------------------~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVf 77 (304)
T TIGR00462 46 ------------------------------------------------LGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIF 77 (304)
T ss_pred ------------------------------------------------cCCCCCCcceeeecCHHHHHHHHHhccCCCEE
Confidence 11136789999999999999974 66899999
Q ss_pred EEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCC
Q 006717 395 SFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSS 474 (634)
Q Consensus 395 eIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~p 474 (634)
|||||||||++ ++||||||||||||++|.|++|+|+++|+||+++++. ++.|
T Consensus 78 eigp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~---------------------------~~~~ 129 (304)
T TIGR00462 78 QICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD---------------------------PFAP 129 (304)
T ss_pred EEcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------------cCCC
Confidence 99999999999 4899999999999999999999999999999999863 1248
Q ss_pred CceeeHHHHHHHHHHhcc------------cccccccccccccChHHHHhHH---hhhC--CccEEEEeCCCCCCCCccc
Q 006717 475 FEKITYTEAVKALEKVTE------------KIFETKLEWGVALTAEHLSYLA---DEIY--KRPVIVYNYPKAVKPFYVR 537 (634)
Q Consensus 475 f~rity~EAi~~L~~~~~------------~~f~~~~~~G~dL~~e~Er~L~---e~~~--~~PvfVtdyP~~~kPFy~~ 537 (634)
|+||||.||++....... ........++.|+...+|++++ ++.+ ++|+||||||..++|||+.
T Consensus 130 ~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~~~ 209 (304)
T TIGR00462 130 WERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARI 209 (304)
T ss_pred cEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCccc
Confidence 999999999762211000 0011223456789999999875 4455 5799999999999999987
Q ss_pred cCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHH-------cCCCccCh-HHHHHHHhcCCCCcceeeccHHHH
Q 006717 538 LNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE-------LGLPREQY-EWYLDLRRHGTVKHSGFSFGFDLM 609 (634)
Q Consensus 538 ~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~-------~gl~~~~~-~wYLda~kyG~PPhgGfGLGiERL 609 (634)
..+|+++++|||||+ +|.||+||++|+++++++++++++ .|+++..+ +|||++++||+|||||||||||||
T Consensus 210 ~~~~~~~~~rfdl~~-~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL 288 (304)
T TIGR00462 210 SPDDPRVAERFELYI-KGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRL 288 (304)
T ss_pred cCCCCCeeEEEEEEE-CCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHH
Confidence 777788999999999 588999999888888877777654 78888787 789999999999999999999999
Q ss_pred HHHhcCCCCcCccccC
Q 006717 610 VLFTTGLTDVRDAIPF 625 (634)
Q Consensus 610 vm~ltg~~nIRdVi~F 625 (634)
+|++||.+||||||+|
T Consensus 289 ~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 289 LMLALGADSIDDVLAF 304 (304)
T ss_pred HHHHhCCCchhhcccC
Confidence 9999999999999998
No 34
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=9.9e-71 Score=568.30 Aligned_cols=262 Identities=24% Similarity=0.467 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHH
Q 006717 237 MRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVE 316 (634)
Q Consensus 237 ~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 316 (634)
+++||.|++++|+||.++||+||+||+|++++|||++++|.|..
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~------------------------------------ 44 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKY------------------------------------ 44 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeee------------------------------------
Confidence 58999999999999999999999999999999999999997631
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEE
Q 006717 317 ELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYS 395 (634)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYe 395 (634)
.+ +|+++||++|||||+|+++ +|++|||+
T Consensus 45 -------------------------------------------------~~-~g~~~~L~~Spql~~~~~~~~~~~~vf~ 74 (269)
T cd00669 45 -------------------------------------------------NA-LGLDYYLRISPQLFKKRLMVGGLDRVFE 74 (269)
T ss_pred -------------------------------------------------cC-CCCcEEeecCHHHHHHHHHhcCCCcEEE
Confidence 01 4889999999999999965 68999999
Q ss_pred EccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCC
Q 006717 396 FGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSF 475 (634)
Q Consensus 396 Igp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf 475 (634)
||||||+| ..|+||++||||||+|++|.|++|+|+++|+||+++++++++++..++.+. ...++.||
T Consensus 75 i~~~fR~e-~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~------------~~~~~~~~ 141 (269)
T cd00669 75 INRNFRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFE------------LEDFGLPF 141 (269)
T ss_pred EecceeCC-CCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccc------------ccccCCCc
Confidence 99999999 558999999999999999999999999999999999999998775554221 11245799
Q ss_pred ceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCC-CCCceEEEEEeecC
Q 006717 476 EKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLND-DGNTVAAFDMVVPK 554 (634)
Q Consensus 476 ~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~-d~~~~~~fDLlvP~ 554 (634)
+||||.||++++. .|+||+|||..++|||++.++ ++++++|||||+|
T Consensus 142 ~rit~~ea~~~~~-------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~- 189 (269)
T cd00669 142 PRLTYREALERYG-------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFIN- 189 (269)
T ss_pred eEeeHHHHHHHhC-------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeC-
Confidence 9999999998542 699999999999999998764 5689999999995
Q ss_pred CeEEechhhhHHhHHHHHHHHHHcCCCcc----ChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 555 GGTVITGSQNEERIDMLNTRIKELGLPRE----QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 555 ggEI~gGsqRe~r~e~L~~~~~~~gl~~~----~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
|+||+||++|+|+++.|.+++++.|++++ .|+|||+|++||+|||||||||||||+|++||.+|||||++|||++
T Consensus 190 g~Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 190 GVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred CEEEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 88999999999999999999999999988 8999999999999999999999999999999999999999999986
No 35
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-67 Score=558.06 Aligned_cols=381 Identities=22% Similarity=0.332 Sum_probs=302.1
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCC----CCCCCCCCcEEEEEEEEecCCC------CCCceEEEEEeeeEEEecCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVS----PSKIRPIGTCLMVEGVLKQPSV------QGKHAVELKVEKILHIGTVDHD 206 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~----~~~~l~~Gs~V~V~G~l~~~~~------~~~q~vEL~~~~i~vlg~~~~~ 206 (634)
.+.|..|||-.|. +|+.++.+... ....++.+|+|.|+|+++..|. ..+|.+|+.++++++++++. .
T Consensus 64 ~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~-~ 140 (628)
T KOG2411|consen 64 MLTFFNLRDAYGI--VQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVN-K 140 (628)
T ss_pred cceEEEeeccCcc--eEEEecchhhhHHhcccCCCChhheEeeeeeEecccccccCccccccceEEEeeeeEEecCcc-C
Confidence 7899999999997 88888765432 2345899999999999998752 13699999999999999986 4
Q ss_pred CCCCCC-------CCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhh-CCcEEeeCCeeecCCCCCCCcceee
Q 006717 207 KYPLSR-------KRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQN-HGFLYVQVPVITTTDSEGFSEKFQV 278 (634)
Q Consensus 207 ~yPl~k-------k~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~-~gF~eV~TPiLt~s~~EGa~e~F~V 278 (634)
++|+.- ...+..+++++|||++|.+.++..+|+||.++..+|+||.+ +||+||+||+|...++|||.| |.|
T Consensus 141 ~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~E-FvV 219 (628)
T KOG2411|consen 141 KLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRTPGGARE-FVV 219 (628)
T ss_pred CCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhhhcCeeeccCcchhccCCCccce-eec
Confidence 677642 24578899999999999999999999999999999999977 579999999999999999998 888
Q ss_pred eccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcC
Q 006717 279 TTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVK 358 (634)
Q Consensus 279 tt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (634)
+|+. |
T Consensus 220 Ptr~--------------~------------------------------------------------------------- 224 (628)
T KOG2411|consen 220 PTRT--------------P------------------------------------------------------------- 224 (628)
T ss_pred ccCC--------------C-------------------------------------------------------------
Confidence 7641 0
Q ss_pred CCcccccccccCceeeeccchHHHHHH-HHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHH
Q 006717 359 TDKVNFSEDFFSRQTYLTVSGRLHLES-YACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYF 437 (634)
Q Consensus 359 ~~~~~~~~~ffg~~~yLtvSpQL~le~-la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Li 437 (634)
. |+-+.|.||||.|+|+ |++|++|+|||++|||+|+++ ...+|||||+|.||+|+|.+|+|+++|++|
T Consensus 225 --------~--g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR-~DRQPEFTQvD~EMsF~~~~dim~liEdll 293 (628)
T KOG2411|consen 225 --------R--GKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLR-ADRQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628)
T ss_pred --------C--CceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccC-cccCCcceeeeeEEeccCHHHHHHHHHHHH
Confidence 0 3336899999999999 567999999999999999996 889999999999999999999999999999
Q ss_pred HHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHH--------------------Hh----c--
Q 006717 438 KFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALE--------------------KV----T-- 491 (634)
Q Consensus 438 k~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~--------------------~~----~-- 491 (634)
++++....+. -+..||+||||.||++..- +. .
T Consensus 294 ~~~ws~~k~~----------------------~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~ 351 (628)
T KOG2411|consen 294 RYVWSEDKGI----------------------QLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLS 351 (628)
T ss_pred HHhchhhcCC----------------------CCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhc
Confidence 9999754321 1456999999999998520 00 0
Q ss_pred ------------------------------c-ccc---------ccccccccccC---hH---HH---------------
Q 006717 492 ------------------------------E-KIF---------ETKLEWGVALT---AE---HL--------------- 510 (634)
Q Consensus 492 ------------------------------~-~~f---------~~~~~~G~dL~---~e---~E--------------- 510 (634)
. ..+ +..-.|-..+. .+ +|
T Consensus 352 d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~ 431 (628)
T KOG2411|consen 352 DGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLL 431 (628)
T ss_pred CCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEE
Confidence 0 000 00011211111 00 01
Q ss_pred ---------------H-----hHHhhh----CCccEEEEeCCCC-------------CCCCccccCCC-------CC--c
Q 006717 511 ---------------S-----YLADEI----YKRPVIVYNYPKA-------------VKPFYVRLNDD-------GN--T 544 (634)
Q Consensus 511 ---------------r-----~L~e~~----~~~PvfVtdyP~~-------------~kPFy~~~~~d-------~~--~ 544 (634)
| .++..+ ...++||+|||.. ++||.+++.+| +. .
T Consensus 432 ~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~r 511 (628)
T KOG2411|consen 432 CVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIR 511 (628)
T ss_pred eccCCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhh
Confidence 0 011111 1257899999985 69999988765 21 3
Q ss_pred eEEEEEeecCCeEEechhhhHHhHHHHHHHHHH-cCCCccChH--HHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCc
Q 006717 545 VAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE-LGLPREQYE--WYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRD 621 (634)
Q Consensus 545 ~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~-~gl~~~~~~--wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRd 621 (634)
...|||++ ||.||+|||.|+|+.+.+..-++. .+++.+.+. ..|+|+.+|+||||||+||+|||+|+|||..||||
T Consensus 512 gqhYDlV~-NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRD 590 (628)
T KOG2411|consen 512 GQHYDLVV-NGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRD 590 (628)
T ss_pred cceeeeEE-ccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchhe
Confidence 46899999 899999999999999997777775 455555444 78999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 006717 622 AIPFPRSLG 630 (634)
Q Consensus 622 Vi~FPr~~~ 630 (634)
||+||++..
T Consensus 591 VIAFPKt~~ 599 (628)
T KOG2411|consen 591 VIAFPKTTT 599 (628)
T ss_pred eeeccccCC
Confidence 999999864
No 36
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=3.5e-65 Score=529.80 Aligned_cols=265 Identities=24% Similarity=0.443 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHH
Q 006717 237 MRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVE 316 (634)
Q Consensus 237 ~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 316 (634)
+|+||.+++++|+||.++||+||+||+|++++||||++ |.+...
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~----------------------------------- 44 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSR----------------------------------- 44 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccc-----------------------------------
Confidence 58999999999999999999999999999999999877 765310
Q ss_pred HHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHH-cccCceEE
Q 006717 317 ELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYA-CALGNVYS 395 (634)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la-~g~~rVYe 395 (634)
.+.+..+||++|||||||+++ +|++|||+
T Consensus 45 --------------------------------------------------~~~~~~~~L~~Spql~lk~ll~~g~~~v~~ 74 (280)
T cd00777 45 --------------------------------------------------LHPGKFYALPQSPQLFKQLLMVSGFDRYFQ 74 (280)
T ss_pred --------------------------------------------------cCCCceeecccCHHHHHHHHHhcCcCcEEE
Confidence 112334579999999999965 68999999
Q ss_pred EccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCC
Q 006717 396 FGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSF 475 (634)
Q Consensus 396 Igp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf 475 (634)
||||||+|++++.|| +||||||||++|+|++|+|+++|+||++++..+++. .+..||
T Consensus 75 i~~~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------------------~~~~p~ 131 (280)
T cd00777 75 IARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------------------ELTTPF 131 (280)
T ss_pred eccceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCC
Confidence 999999999987766 599999999999999999999999999999887642 134699
Q ss_pred ceeeHHHHHHHHHHhcccccccccccccccC-----hHHHHhHHhhhCCccEEEEe-CCCCCCC---CccccCCCCCceE
Q 006717 476 EKITYTEAVKALEKVTEKIFETKLEWGVALT-----AEHLSYLADEIYKRPVIVYN-YPKAVKP---FYVRLNDDGNTVA 546 (634)
Q Consensus 476 ~rity~EAi~~L~~~~~~~f~~~~~~G~dL~-----~e~Er~L~e~~~~~PvfVtd-yP~~~kP---Fy~~~~~d~~~~~ 546 (634)
+||||.||++.+. ..+.|+.|+. .+++++ +++++ ||..... ++ +.++++++++
T Consensus 132 ~rity~eA~~~~~--------~~~~~~~d~~~~~~~~~~~~~---------~~~~~pf~~~~~~~~~~~-~~~~~~~~~~ 193 (280)
T cd00777 132 PRMTYAEAMERYG--------FKFLWIVDFPLFEWDEEEGRL---------VSAHHPFTAPKEEDLDLL-EKDPEDARAQ 193 (280)
T ss_pred ceeeHHHHHHHhC--------CCCccccCCcccCChhHHHHH---------HHHhCCCcCCCcccchhh-hcCCccCeeE
Confidence 9999999998541 2345776653 222333 23333 3332211 22 2222226999
Q ss_pred EEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCC----ccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCcc
Q 006717 547 AFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLP----REQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 547 ~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~----~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
|||||+| |+||+||++|++++++|.+++++.|++ .+.|+|||+|++||+|||||||||||||+|++||.+|||||
T Consensus 194 ~fdl~~~-G~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv 272 (280)
T cd00777 194 AYDLVLN-GVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDV 272 (280)
T ss_pred EEEEEeC-CEEEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheE
Confidence 9999995 889999999999999999999999998 45689999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 006717 623 IPFPRSL 629 (634)
Q Consensus 623 i~FPr~~ 629 (634)
++|||+.
T Consensus 273 ~~FPr~~ 279 (280)
T cd00777 273 IAFPKTQ 279 (280)
T ss_pred eecCCCC
Confidence 9999986
No 37
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=8.3e-63 Score=517.89 Aligned_cols=276 Identities=17% Similarity=0.298 Sum_probs=222.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCC-CcceeeeccccccccCCCCcccccccchHHHHHHHHhhhh
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGF-SEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKS 312 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa-~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 312 (634)
..++++|+.|++++|+||.++||+||+||+|+..+.+|+ ..+|.+.-.
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~------------------------------- 50 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFV------------------------------- 50 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeec-------------------------------
Confidence 478999999999999999999999999999998765443 233432100
Q ss_pred hhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccC
Q 006717 313 NKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALG 391 (634)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~ 391 (634)
+.....|+.+||++|||+++|++ ++|++
T Consensus 51 ---------------------------------------------------~~~~~~~~~~~L~~SPe~~~kr~la~~~~ 79 (306)
T PRK09350 51 ---------------------------------------------------GPGASQGKTLWLMTSPEYHMKRLLAAGSG 79 (306)
T ss_pred ---------------------------------------------------cccccCCcceEEecCHHHHHHHHhhcccc
Confidence 00012379999999999999984 56899
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcccc
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVI 471 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~ 471 (634)
|||+||||||||++ |+||++||||||||++|+|++|+|+++|+||++++..
T Consensus 80 rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~---------------------------- 130 (306)
T PRK09350 80 PIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC---------------------------- 130 (306)
T ss_pred ceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc----------------------------
Confidence 99999999999999 8999999999999999999999999999999988641
Q ss_pred CCCCceeeHHHHHHHHHHhc--c---ccc-cccccccc--------ccChHHHH---hHHhhhCC--ccEEEEeCCCCCC
Q 006717 472 SSSFEKITYTEAVKALEKVT--E---KIF-ETKLEWGV--------ALTAEHLS---YLADEIYK--RPVIVYNYPKAVK 532 (634)
Q Consensus 472 ~~pf~rity~EAi~~L~~~~--~---~~f-~~~~~~G~--------dL~~e~Er---~L~e~~~~--~PvfVtdyP~~~k 532 (634)
.||++|+|.||++.+.... . ..+ +...+||. ++.+..++ .++|+.++ .|+||+|||.+++
T Consensus 131 -~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~ 209 (306)
T PRK09350 131 -EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQA 209 (306)
T ss_pred -CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccC
Confidence 3788999999986431100 0 000 01123333 22222222 45677663 6999999999999
Q ss_pred CCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHH-------cCCCccCh-HHHHHHHhcCCCCcceeec
Q 006717 533 PFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE-------LGLPREQY-EWYLDLRRHGTVKHSGFSF 604 (634)
Q Consensus 533 PFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~-------~gl~~~~~-~wYLda~kyG~PPhgGfGL 604 (634)
||||+.++|+++++|||||+ +|+||+||++|++++++|.+++++ .|+++..+ +|||++++||+||||||||
T Consensus 210 ~~a~~~~~~~~~~~rfdl~i-~G~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~gi 288 (306)
T PRK09350 210 ALAKISTEDHRVAERFEVYF-KGIELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVAL 288 (306)
T ss_pred ccccccCCCCCeeEEEEEEE-CCEEEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEe
Confidence 99988777889999999999 689999999999999999988864 78888887 6799999999999999999
Q ss_pred cHHHHHHHhcCCCCcCcc
Q 006717 605 GFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 605 GiERLvm~ltg~~nIRdV 622 (634)
|||||+|++||++|||||
T Consensus 289 GidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 289 GVDRLIMLALGAESISEV 306 (306)
T ss_pred cHHHHHHHHcCCCCcccC
Confidence 999999999999999997
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-48 Score=392.80 Aligned_cols=277 Identities=21% Similarity=0.327 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC-CCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhh
Q 006717 235 SVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS-EGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSN 313 (634)
Q Consensus 235 av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~-EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 313 (634)
..+-.|+.|+.+||.||.++||+||+||.|..+.. |---++|.+.-+. |
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~--------------~---------------- 63 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLG--------------P---------------- 63 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEec--------------c----------------
Confidence 34889999999999999999999999999998742 3334455542110 0
Q ss_pred hHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCc
Q 006717 314 KVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGN 392 (634)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~r 392 (634)
..--+++.||..||++|+|+| ++|-++
T Consensus 64 ----------------------------------------------------~~~~~~~l~L~TSPEy~mKrLLAag~~~ 91 (322)
T COG2269 64 ----------------------------------------------------GGAKGKPLWLHTSPEYHMKRLLAAGSGP 91 (322)
T ss_pred ----------------------------------------------------CccccceeeeecCcHHHHHHHHHccCCc
Confidence 001157899999999999995 669999
Q ss_pred eEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccC
Q 006717 393 VYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVIS 472 (634)
Q Consensus 393 VYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~ 472 (634)
+||||+||||++. +.+|+|||||||||..+.||+.+|+.+.+|++.++. |
T Consensus 92 ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~-----~------------------------ 141 (322)
T COG2269 92 IFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE-----C------------------------ 141 (322)
T ss_pred chhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHc-----c------------------------
Confidence 9999999999996 899999999999999999999999999999887764 2
Q ss_pred CCCceeeHHHHHHHHH-------------Hhcc-cccccccccccccChHHHHh---HHhhhC--CccEEEEeCCCCCCC
Q 006717 473 SSFEKITYTEAVKALE-------------KVTE-KIFETKLEWGVALTAEHLSY---LADEIY--KRPVIVYNYPKAVKP 533 (634)
Q Consensus 473 ~pf~rity~EAi~~L~-------------~~~~-~~f~~~~~~G~dL~~e~Er~---L~e~~~--~~PvfVtdyP~~~kP 533 (634)
.++.++||.||+...- +... .++....+|. ..+-.++. .+|+.+ ++|+||+|||..+.+
T Consensus 142 ~~~E~ls~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~--~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaa 219 (322)
T COG2269 142 VEAERLSYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDED--WDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAA 219 (322)
T ss_pred CCcceeeHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccC--HHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHH
Confidence 2588999999987421 1100 0111111111 11122232 255665 589999999999999
Q ss_pred CccccCCCCCceEEEEEeecCCeEEechh--------hhHHhHHHHHHHHHHcCCCccC-hHHHHHHHhcCCCCcceeec
Q 006717 534 FYVRLNDDGNTVAAFDMVVPKGGTVITGS--------QNEERIDMLNTRIKELGLPREQ-YEWYLDLRRHGTVKHSGFSF 604 (634)
Q Consensus 534 Fy~~~~~d~~~~~~fDLlvP~ggEI~gGs--------qRe~r~e~L~~~~~~~gl~~~~-~~wYLda~kyG~PPhgGfGL 604 (634)
++...+.|+.+++|||||+ +|.||+||. || +||+.-++.....|+..-+ +++||.|+.. ||||+|++|
T Consensus 220 LA~i~~~D~rVAERFElY~-kGiELaNgf~EltDa~Eqr-rRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvAL 296 (322)
T COG2269 220 LAQISTGDPRVAERFELYY-KGIELANGFHELTDAAEQR-RRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVAL 296 (322)
T ss_pred hhccCCCCcchhhhhhhee-eeeeecccchhcCCHHHHH-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCccccee
Confidence 9999999999999999999 899999994 55 6777655555556665444 7999999999 999999999
Q ss_pred cHHHHHHHhcCCCCcCccccCCCC
Q 006717 605 GFDLMVLFTTGLTDVRDAIPFPRS 628 (634)
Q Consensus 605 GiERLvm~ltg~~nIRdVi~FPr~ 628 (634)
|||||+|+++|.++|.|||.||..
T Consensus 297 G~DRLvmLalg~~~i~~Vi~f~v~ 320 (322)
T COG2269 297 GFDRLVMLALGAESIDDVIAFPVA 320 (322)
T ss_pred cHHHHHHHHcCcchHHHHhhcccc
Confidence 999999999999999999999975
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.76 E-value=5.5e-18 Score=158.22 Aligned_cols=92 Identities=11% Similarity=0.181 Sum_probs=76.0
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCC------CCceEEEEEeeeEEEecCCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQ------GKHAVELKVEKILHIGTVDHDK 207 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~------~~q~vEL~~~~i~vlg~~~~~~ 207 (634)
+++|++|+||++. +|||+..+..+ ..+.|+.||+|.|+|++..++.+ .++++||+++++.++++|. +
T Consensus 31 k~~Fi~LrD~~g~--~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~~--~ 106 (135)
T cd04317 31 GLIFIDLRDRYGI--VQVVFDPEEAPEFELAEKLRNESVIQVTGKVRARPEGTVNPKLPTGEIEVVASELEVLNKAK--T 106 (135)
T ss_pred CEEEEEEecCCee--EEEEEeCCchhHHHHHhCCCCccEEEEEEEEECCCccccCCCCCCCcEEEEEeEEEEEECCC--C
Confidence 7999999999985 99999765332 23568999999999999986521 3578999999999999994 6
Q ss_pred CCCCCCC---CChhhccccceeecccch
Q 006717 208 YPLSRKR---LPMDMLRDSAHFRPRTTT 232 (634)
Q Consensus 208 yPl~kk~---~~~e~lr~~rhLr~Rt~~ 232 (634)
+|+..+. .+.+++.++|||++|++.
T Consensus 107 lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 107 LPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred CCCccccccCCCHHHhhhcceeecCCCC
Confidence 8887654 479999999999999864
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.72 E-value=2.9e-17 Score=146.75 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=86.1
Q ss_pred ccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC--CC--CCCCCCCcEEEEEEEEecCCCCCCceEEEEE
Q 006717 119 NVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV--SP--SKIRPIGTCLMVEGVLKQPSVQGKHAVELKV 194 (634)
Q Consensus 119 ~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~--~~--~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~ 194 (634)
+|.|+|||+++|. +|+++|++|+||++. +|||++.+.. .+ .+.++.||+|.|+|+++.+| ...+.+||++
T Consensus 1 ~V~v~Gwv~~~R~---~gk~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~-~~~~~~Ei~~ 74 (103)
T cd04319 1 KVTLAGWVYRKRE---VGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADP-RAPGGAEVHG 74 (103)
T ss_pred CEEEEEEEEeEEc---CCCeEEEEEecCCee--EEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECC-CCCCCEEEEE
Confidence 3789999999998 999999999999986 9999986521 11 24689999999999999987 5567899999
Q ss_pred eeeEEEecCCCCCCCCCCCCCChhhcccccee
Q 006717 195 EKILHIGTVDHDKYPLSRKRLPMDMLRDSAHF 226 (634)
Q Consensus 195 ~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhL 226 (634)
++++++|+++ +||++++. ++|+++++|||
T Consensus 75 ~~i~vl~~a~--~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 75 EKLEIIQNVE--FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEEEecCC--CCccCCCC-CHHHHhhccCC
Confidence 9999999995 69999875 99999999997
No 41
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.70 E-value=4.3e-17 Score=146.77 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=84.1
Q ss_pred ccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC---CC---CCCCCCCcEEEEEEEEecCCCCCCceEEE
Q 006717 119 NVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV---SP---SKIRPIGTCLMVEGVLKQPSVQGKHAVEL 192 (634)
Q Consensus 119 ~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~---~~---~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL 192 (634)
.|+|+|||+++|. .|+++|++|+||++. +|||++.+.. .+ .+.|+.||+|.|+|++++++ ++++||
T Consensus 1 ~v~v~GwV~~~R~---~g~~~Fi~lrd~~~~--lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~---~g~~El 72 (108)
T cd04322 1 EVSVAGRIMSKRG---SGKLSFADLQDESGK--IQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTK---TGELSI 72 (108)
T ss_pred CEEEEEEEEEEec---CCCeEEEEEEECCeE--EEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecC---CCCEEE
Confidence 3789999999998 899999999999974 9999976531 12 23499999999999999987 478999
Q ss_pred EEeeeEEEecCCCCCCCCCCCCC---Chhhccccceeec
Q 006717 193 KVEKILHIGTVDHDKYPLSRKRL---PMDMLRDSAHFRP 228 (634)
Q Consensus 193 ~~~~i~vlg~~~~~~yPl~kk~~---~~e~lr~~rhLr~ 228 (634)
++++++++|+|. ||||.+.+ +.|+++++|||++
T Consensus 73 ~~~~~~ils~~~---~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 73 FVKEFTLLSKSL---RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeCEeEEeeccC---CCCCCCccCcCChhheeecccccC
Confidence 999999999985 77776654 5899999999985
No 42
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.60 E-value=1.1e-14 Score=131.20 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=60.7
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCC-----CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVS-----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLS 211 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~-----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~ 211 (634)
+++|++||||++. +|||+..+... ..+.|+.||+|.|+|++..++ ...+.+||+++++.++|+++ .+||++
T Consensus 29 ~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~-~~~~~~Ei~~~~i~il~~~~-~~~P~~ 104 (108)
T cd04316 29 GIKFVILRDREGI--VQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEP-KAPNGVEIIPEEIEVLSEAK-TPLPLD 104 (108)
T ss_pred CeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCC-CCCCCEEEEEeEEEEEeCCC-CCCCcC
Confidence 7999999999986 99999864311 235689999999999999987 44578999999999999996 479986
Q ss_pred CC
Q 006717 212 RK 213 (634)
Q Consensus 212 kk 213 (634)
.+
T Consensus 105 ~~ 106 (108)
T cd04316 105 PT 106 (108)
T ss_pred cC
Confidence 43
No 43
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.50 E-value=9e-14 Score=119.04 Aligned_cols=80 Identities=31% Similarity=0.500 Sum_probs=69.6
Q ss_pred ccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC--CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEee
Q 006717 119 NVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS--PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEK 196 (634)
Q Consensus 119 ~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~--~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~ 196 (634)
.|+|+|||+++|. +|+++|++||||++.+++|||++++... ..+.++.||+|.|+|.+..++ .++|++||++++
T Consensus 1 ~v~v~Gwv~~~R~---~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~-~~~~~~El~~~~ 76 (82)
T cd04318 1 EVTVNGWVRSVRD---SKKISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVLVKSP-GAKQPFELQAEK 76 (82)
T ss_pred CEEEEEeEEEEEc---CCcEEEEEEECCCCccCEEEEEeCcccCHHHHhcCCCceEEEEEEEEEeCC-CCCCCEEEEEEE
Confidence 3789999999998 9999999999999988899999876433 235789999999999999987 446899999999
Q ss_pred eEEEec
Q 006717 197 ILHIGT 202 (634)
Q Consensus 197 i~vlg~ 202 (634)
+.+++.
T Consensus 77 i~il~~ 82 (82)
T cd04318 77 IEVLGE 82 (82)
T ss_pred EEEecC
Confidence 999863
No 44
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.50 E-value=7.1e-14 Score=152.20 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=92.0
Q ss_pred CCCCCCC---CCChhhccccceeecccchhhHHHHH-----HHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceee
Q 006717 207 KYPLSRK---RLPMDMLRDSAHFRPRTTTVASVMRI-----RSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQV 278 (634)
Q Consensus 207 ~yPl~kk---~~~~e~lr~~rhLr~Rt~~~~av~ri-----Rs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~V 278 (634)
..|+... ...+|+++.+| |.+.+.+++.+ .+.|..++|+||...||.||.||+|+... .|..
T Consensus 169 ~~~~~~~~~~~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee------~~e~ 238 (417)
T PRK09537 169 KISLNSEKPKFKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAE------YIER 238 (417)
T ss_pred ccccccCCchhhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHH------HHHH
Confidence 4565543 34678888888 89999999999 99999999999999999999999998542 1211
Q ss_pred eccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcC
Q 006717 279 TTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVK 358 (634)
Q Consensus 279 tt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (634)
..... +....
T Consensus 239 ~g~~~----------------------------------------------------------------------g~~i~ 248 (417)
T PRK09537 239 MGIDN----------------------------------------------------------------------DTELS 248 (417)
T ss_pred hCCCC----------------------------------------------------------------------cccch
Confidence 00000 00000
Q ss_pred CCcccccccccCceeeec--cchHHHHHHHH-----cccCceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 359 TDKVNFSEDFFSRQTYLT--VSGRLHLESYA-----CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 359 ~~~~~~~~~ffg~~~yLt--vSpQL~le~la-----~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
...-.++...+|+ ..|+|+..... ..=-|+|+||+|||+|.. +.+|++||+|++++....+
T Consensus 249 -----~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~ 316 (417)
T PRK09537 249 -----KQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSG 316 (417)
T ss_pred -----hhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCc
Confidence 0000124457888 67887764321 112389999999999987 6899999999999987543
No 45
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.49 E-value=1.2e-13 Score=123.07 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=73.1
Q ss_pred ccccceeeeccCCCCCCC-ceEEEEEEcCccceeEEEEEeCCCC---C----CCCCCCCCcEEEEEEEEecCCCC----C
Q 006717 119 NVPLREKLEALVPKPPPP-STVFLQVSDGSCVASLQVVVESTLV---S----PSKIRPIGTCLMVEGVLKQPSVQ----G 186 (634)
Q Consensus 119 ~V~vrGRi~~~R~~~~~G-~l~Fl~l~Dgs~~~~lQvV~~~~~~---~----~~~~l~~Gs~V~V~G~l~~~~~~----~ 186 (634)
+|+|+|||+++|. .| +++|++||||++. +|||++.+.. . ..+.|+.||+|.|+|++..++.. .
T Consensus 1 ~V~i~Gwv~~~R~---~g~k~~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~ 75 (102)
T cd04320 1 EVLIRARVHTSRA---QGAKLAFLVLRQQGYT--IQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCT 75 (102)
T ss_pred CEEEEEEEEEeec---CCCceEEEEEecCCce--EEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCC
Confidence 4789999999998 88 9999999999985 9999986531 1 23568999999999999987521 1
Q ss_pred CceEEEEEeeeEEEecCCCCCCCCCC
Q 006717 187 KHAVELKVEKILHIGTVDHDKYPLSR 212 (634)
Q Consensus 187 ~q~vEL~~~~i~vlg~~~~~~yPl~k 212 (634)
.+++||+++++++|++|. .+||++.
T Consensus 76 ~~~~El~~~~i~il~~~~-~~~P~~~ 100 (102)
T cd04320 76 QQDVELHIEKIYVVSEAA-EPLPFQL 100 (102)
T ss_pred cCcEEEEEEEEEEEecCC-CCCCCCC
Confidence 388999999999999995 4688864
No 46
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.45 E-value=3e-13 Score=117.24 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=53.0
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCCC--CCCCCCCcEEEEEEEEecCCCC---CCceEEEEEeeeEEEec
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVSP--SKIRPIGTCLMVEGVLKQPSVQ---GKHAVELKVEKILHIGT 202 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~~--~~~l~~Gs~V~V~G~l~~~~~~---~~q~vEL~~~~i~vlg~ 202 (634)
+++|++|+||++ ..+|||++.+...+ .+.++.||+|.|+|++..++.. +++++||.++++++|++
T Consensus 17 ~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~~i~il~~ 86 (86)
T cd04321 17 KLSFADLRDPNG-DIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVDDIQTLNA 86 (86)
T ss_pred ceEEEEEECCCC-CEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEEEEEEecC
Confidence 899999999999 46999997653222 2468999999999999998731 13899999999999974
No 47
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.40 E-value=1e-12 Score=113.21 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=67.0
Q ss_pred ccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCCC---CceEEE
Q 006717 119 NVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQG---KHAVEL 192 (634)
Q Consensus 119 ~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~~---~q~vEL 192 (634)
.|.|+|||+++|. .|+++|++||||++. +|+|+..+... ..+.|+.||+|.|+|++..++ .. .+.+||
T Consensus 1 ~V~v~Gwv~~~R~---~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~-~~~~~~~~~Ei 74 (84)
T cd04323 1 RVKVFGWVHRLRS---QKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDP-RAKQAPGGYEL 74 (84)
T ss_pred CEEEEEEEEEEec---CCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECC-cccCCCCCEEE
Confidence 4789999999998 899999999999997 99999765322 235689999999999999987 44 688999
Q ss_pred EEeeeEEEec
Q 006717 193 KVEKILHIGT 202 (634)
Q Consensus 193 ~~~~i~vlg~ 202 (634)
+++++++||+
T Consensus 75 ~~~~i~vl~~ 84 (84)
T cd04323 75 QVDYLEIIGE 84 (84)
T ss_pred EEEEEEEEcC
Confidence 9999999974
No 48
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.38 E-value=2.5e-12 Score=140.32 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=44.5
Q ss_pred Cceeeec--cchHHHHHHHH----cc-cCceEEEccccccCcCCCCCccccccccchhhcCCC--HHHHH
Q 006717 370 SRQTYLT--VSGRLHLESYA----CA-LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ--LEDAM 430 (634)
Q Consensus 370 g~~~yLt--vSpQL~le~la----~g-~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d--~~dlm 430 (634)
+...+|+ ..|+|+.-... .. --|+|+||+|||+|.. +.+|+.||||++++.+..+ +.|+.
T Consensus 291 ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDle 359 (453)
T TIGR02367 291 DKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLE 359 (453)
T ss_pred cCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHH
Confidence 4457888 78888853211 12 2499999999999987 5899999999999988654 44444
No 49
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.37 E-value=2.2e-12 Score=111.19 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=67.3
Q ss_pred ccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC----CCCCCCCCcEEEEEEEEecCCCC--CCceEEE
Q 006717 119 NVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS----PSKIRPIGTCLMVEGVLKQPSVQ--GKHAVEL 192 (634)
Q Consensus 119 ~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~----~~~~l~~Gs~V~V~G~l~~~~~~--~~q~vEL 192 (634)
.|+|+|||+++|. .|+++|++|+||++. +|||++.+..+ ..+.|+.||+|.|+|.+..++.. ..+++||
T Consensus 1 ~V~i~Gwv~~~R~---~g~~~Fi~Lrd~~~~--iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El 75 (85)
T cd04100 1 EVTLAGWVHSRRD---HGGLIFIDLRDGSGI--VQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIEL 75 (85)
T ss_pred CEEEEEEEehhcc---CCCEEEEEEEeCCee--EEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEE
Confidence 4789999999998 899999999999975 99999876432 23578999999999999988721 4789999
Q ss_pred EEeeeEEEec
Q 006717 193 KVEKILHIGT 202 (634)
Q Consensus 193 ~~~~i~vlg~ 202 (634)
.++++.++++
T Consensus 76 ~~~~i~il~~ 85 (85)
T cd04100 76 QAEELEVLSK 85 (85)
T ss_pred EEeEEEEECC
Confidence 9999999874
No 50
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.36 E-value=7.5e-13 Score=129.16 Aligned_cols=57 Identities=19% Similarity=0.151 Sum_probs=46.7
Q ss_pred cCceeeeccchHHHHHHHHc-----ccCceEEEccccccCcCCCC--CccccccccchhhcCCCH
Q 006717 369 FSRQTYLTVSGRLHLESYAC-----ALGNVYSFGPRFRAEKKESS--KHAAEMLMVETEIAFSQL 426 (634)
Q Consensus 369 fg~~~yLtvSpQL~le~la~-----g~~rVYeIgp~FRaE~s~T~--rHlpEFtmLE~E~af~d~ 426 (634)
.+...+|+.|....+-.++. .--|+||||+|||+|.. +. +|+.||+|+++++...+.
T Consensus 49 ~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~ 112 (211)
T cd00768 49 NEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDG 112 (211)
T ss_pred CCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCc
Confidence 45668999999999887553 34599999999999976 34 789999999999988653
No 51
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.36 E-value=3.9e-11 Score=125.72 Aligned_cols=205 Identities=12% Similarity=0.115 Sum_probs=123.3
Q ss_pred CceEEEcccccc-CcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcc
Q 006717 391 GNVYSFGPRFRA-EKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQS 469 (634)
Q Consensus 391 ~rVYeIgp~FRa-E~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~ 469 (634)
+.+|+=-++.|. |+. ++.|.-=--|-|||+....-+-.++...+.++.++..+...- .++...++ .+..
T Consensus 93 eGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te----~~~~~~yp-----~l~~ 162 (348)
T PTZ00213 93 EGIYTDMNALRVEEEL-DNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRKTE----EAICNEYP-----NLKR 162 (348)
T ss_pred ceeeeccccccCCccc-CccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHHHH----HHHHHHch-----hhhh
Confidence 568996666665 554 588988788899999887666666666666666655443221 11122121 0111
Q ss_pred ccCCCCceeeHHHHHHHHHHhcccccccccccccccCh-HHHHhHHhhhCCccEEEEeC--C------CCCCCC-cc---
Q 006717 470 VISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTA-EHLSYLADEIYKRPVIVYNY--P------KAVKPF-YV--- 536 (634)
Q Consensus 470 ~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~-e~Er~L~e~~~~~PvfVtdy--P------~~~kPF-y~--- 536 (634)
.+. ..|+|.-+-+++... . +|+. +-|+.+++.+ +-|||+.- + .+.++. |.
T Consensus 163 ~Lp---~~I~FitsqeL~~~Y-P-----------~lt~keRE~~i~ke~--gaVFi~~IG~~L~~G~~Hd~RApDYDDW~ 225 (348)
T PTZ00213 163 ILP---KEITFLHTEHLLKMY-P-----------NLSPKEREREIVKKY--GAVFLIGIGCKLSSGDTHDLRAPDYDDWS 225 (348)
T ss_pred cCC---CceEEecHHHHHHHC-C-----------CCCHHHHHHHHHHHh--CcEEEEeccCcCCCCCcCCCCCCCccccc
Confidence 111 245554444433221 0 2222 2344555543 34444431 1 111110 00
Q ss_pred ----------------ccCCCCCceEEEEEee-----cCCeEEechhhhHHhHHHHHHHHHHcC-CCccChHHHHHHHhc
Q 006717 537 ----------------RLNDDGNTVAAFDMVV-----PKGGTVITGSQNEERIDMLNTRIKELG-LPREQYEWYLDLRRH 594 (634)
Q Consensus 537 ----------------~~~~d~~~~~~fDLlv-----P~ggEI~gGsqRe~r~e~L~~~~~~~g-l~~~~~~wYLda~ky 594 (634)
+....+-.-..=|+++ ....||.+|.+|+ +++.|.++++..| .+...+.||++ +..
T Consensus 226 t~~~~~~~~~~~~~~~~~~~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~ 303 (348)
T PTZ00213 226 SPVSASKIGFPTADPTMNSLMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLN 303 (348)
T ss_pred ccccccccccccccccccccccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHc
Confidence 0000000002234433 2469999999998 9999999999999 67788999999 677
Q ss_pred C-CCCcceeeccHHHHHHHhcCCCCcCcccc
Q 006717 595 G-TVKHSGFSFGFDLMVLFTTGLTDVRDAIP 624 (634)
Q Consensus 595 G-~PPhgGfGLGiERLvm~ltg~~nIRdVi~ 624 (634)
| +|+|+|+|||+|||+|+|+|..+|.||..
T Consensus 304 g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 304 GELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred CCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 7 89999999999999999999999999975
No 52
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.35 E-value=4.4e-11 Score=123.98 Aligned_cols=205 Identities=16% Similarity=0.159 Sum_probs=130.4
Q ss_pred CceEEEcccccc-CcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcc
Q 006717 391 GNVYSFGPRFRA-EKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQS 469 (634)
Q Consensus 391 ~rVYeIgp~FRa-E~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~ 469 (634)
+.+|+=-.+.|. |+. ++.|.-=--|-|||.....-+-.++...+.++.++..+...- .++...++ .+..
T Consensus 82 eGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te----~~~~~~y~-----~~~~ 151 (309)
T cd00645 82 EGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETE----LEVNEKYP-----QLEP 151 (309)
T ss_pred ceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHH----HHHHHHch-----hhhh
Confidence 568887777776 565 588988888899999877666666666666666655543321 12222221 0111
Q ss_pred ccCCCCceeeHHHHHHHHHHhcccccccccccccccCh-HHHHhHHhhhCCccEEEEeCCCCCCC---CccccCCCCCce
Q 006717 470 VISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTA-EHLSYLADEIYKRPVIVYNYPKAVKP---FYVRLNDDGNTV 545 (634)
Q Consensus 470 ~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~-e~Er~L~e~~~~~PvfVtdyP~~~kP---Fy~~~~~d~~~~ 545 (634)
.+. ..|+|.-+-+++... . +|+. +-|..+++.+ +-|||+.-=..++. --.+..+-+...
T Consensus 152 ~Lp---~~i~FitsqeL~~~Y-P-----------~l~~keRE~~i~ke~--gaVFi~~IG~~L~~g~~Hd~RapDYDDW~ 214 (309)
T cd00645 152 ILP---EEITFITSQELEDRY-P-----------DLTPKEREDAICKEH--GAVFIIGIGGKLSDGKKHDGRAPDYDDWT 214 (309)
T ss_pred cCC---CceEEecHHHHHHHC-C-----------CCCHHHHHHHHHHHh--CcEEEEeccCcCCCCCcCCCCCCCCcCcc
Confidence 111 245555544433221 1 2433 4466777764 56777653322211 111111111233
Q ss_pred EEEEEee-----cCCeEEechhhhHHhHHHHHHHHHHcC-CCccChHHHHHHHhcC-CCCcceeeccHHHHHHHhcCCCC
Q 006717 546 AAFDMVV-----PKGGTVITGSQNEERIDMLNTRIKELG-LPREQYEWYLDLRRHG-TVKHSGFSFGFDLMVLFTTGLTD 618 (634)
Q Consensus 546 ~~fDLlv-----P~ggEI~gGsqRe~r~e~L~~~~~~~g-l~~~~~~wYLda~kyG-~PPhgGfGLGiERLvm~ltg~~n 618 (634)
..=|+++ ....||.+|.+|+++ +.|.++++..| .+...+.| ++++.+| +|||+|+|||+|||+|+|+|..+
T Consensus 215 LNGDil~w~~~l~~a~ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~H 292 (309)
T cd00645 215 LNGDILVWNPVLQRAFELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAH 292 (309)
T ss_pred ccceEEEEchhcCceeeecCcceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccch
Confidence 3334443 246999999999988 99999999999 56667777 9999999 89999999999999999999999
Q ss_pred cCcccc
Q 006717 619 VRDAIP 624 (634)
Q Consensus 619 IRdVi~ 624 (634)
|.+|.+
T Consensus 293 IgEVqa 298 (309)
T cd00645 293 IGEVQA 298 (309)
T ss_pred hcceee
Confidence 999986
No 53
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.33 E-value=8.4e-11 Score=122.91 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=139.3
Q ss_pred eeeeccchHHHHHHHHc--cc---CceEEEcccccc-CcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 006717 372 QTYLTVSGRLHLESYAC--AL---GNVYSFGPRFRA-EKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWIL 445 (634)
Q Consensus 372 ~~yLtvSpQL~le~la~--g~---~rVYeIgp~FRa-E~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl 445 (634)
.+-..+|=-=|+.+... +| +.+|+=-.+.|. |+. +..|.-=--|-|||.....-+-.++...+.++.++..+.
T Consensus 69 ~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik 147 (327)
T PRK05425 69 TFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIK 147 (327)
T ss_pred eeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHH
Confidence 33444554445554322 54 468887777776 565 588988788899999887666666666666666665543
Q ss_pred hhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccCh-HHHHhHHhhhCCccEEE
Q 006717 446 EDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTA-EHLSYLADEIYKRPVIV 524 (634)
Q Consensus 446 ~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~-e~Er~L~e~~~~~PvfV 524 (634)
..- .++...++. +. .+. ..|+|.-+-++.... . +|+. +-|..+++.+ +-|||
T Consensus 148 ~te----~~~~~~y~~--~~----~Lp---~~i~FitsqeL~~~Y-P-----------~l~~keRE~~i~ke~--gaVFi 200 (327)
T PRK05425 148 ATE----KAVSKKYPL--LP----FLP---EEITFITSQELEDRY-P-----------DLTPKEREDAIAKEY--GAVFL 200 (327)
T ss_pred HHH----HHHHHhCcc--cc----cCC---CceEEecHHHHHHHC-C-----------CCCHHHHHHHHHHHh--CcEEE
Confidence 321 122222220 00 011 245555544433221 1 2333 4466777764 56777
Q ss_pred EeCCCCCC---CCccccCCCCCceEEEEEee-----cCCeEEechhhhHHhHHHHHHHHHHcC-CCccChHHHHHHHhcC
Q 006717 525 YNYPKAVK---PFYVRLNDDGNTVAAFDMVV-----PKGGTVITGSQNEERIDMLNTRIKELG-LPREQYEWYLDLRRHG 595 (634)
Q Consensus 525 tdyP~~~k---PFy~~~~~d~~~~~~fDLlv-----P~ggEI~gGsqRe~r~e~L~~~~~~~g-l~~~~~~wYLda~kyG 595 (634)
+.-=..++ |=-.+..|-+.....=||++ ....||.+|.+|++ ++.|.++++..| .+...+.||+++ ..|
T Consensus 201 ~~IG~~L~~g~~Hd~RapDYDDW~LNGDilvw~~~l~~a~ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g 278 (327)
T PRK05425 201 IGIGGKLSDGKPHDGRAPDYDDWGLNGDILVWNPVLDDAFELSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNG 278 (327)
T ss_pred EeccCcCCCCCcCCCCCCCCcCcccCceEEEEccccCceeeecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhC
Confidence 65322221 11111111112223334433 24699999999987 999999999999 577889999999 778
Q ss_pred -CCCcceeeccHHHHHHHhcCCCCcCcccc
Q 006717 596 -TVKHSGFSFGFDLMVLFTTGLTDVRDAIP 624 (634)
Q Consensus 596 -~PPhgGfGLGiERLvm~ltg~~nIRdVi~ 624 (634)
+|||+|+|||+|||+|+|+|..+|.+|.+
T Consensus 279 ~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 279 ELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred CCCCcccccccHHHHHHHHhccchhccccc
Confidence 89999999999999999999999999976
No 54
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.17 E-value=2e-09 Score=112.53 Aligned_cols=223 Identities=14% Similarity=0.139 Sum_probs=135.7
Q ss_pred eeeccchHHHHHHHHc--cc---CceEEEcccccc-CcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 006717 373 TYLTVSGRLHLESYAC--AL---GNVYSFGPRFRA-EKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILE 446 (634)
Q Consensus 373 ~yLtvSpQL~le~la~--g~---~rVYeIgp~FRa-E~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~ 446 (634)
+-.-+|=-=|+.+... +| +.+|+=-.+-|. |++-++.|.-=--|-|||.....-+-.++...+.++.++..+..
T Consensus 67 ~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~ 146 (330)
T TIGR00669 67 FEVVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRA 146 (330)
T ss_pred eEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHH
Confidence 3334444444444222 55 578887777776 66235788877788899998766655666666666666555433
Q ss_pred hCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccCh-HHHHhHHhhhCCccEEEE
Q 006717 447 DCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTA-EHLSYLADEIYKRPVIVY 525 (634)
Q Consensus 447 ~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~-e~Er~L~e~~~~~PvfVt 525 (634)
.- .++...+. +...+. ..|+|.-+-+++... . +|+. +-|+.+++.+ +-|||+
T Consensus 147 te----~~~~~~y~------l~~~Lp---~~I~FitsqeL~~~Y-P-----------~lt~keRE~~i~ke~--gaVFi~ 199 (330)
T TIGR00669 147 TE----AAVSERFG------LAPFLP---DQIHFVHSEELVSRY-P-----------DLDSKGRERAICKEL--GAVFLI 199 (330)
T ss_pred HH----HHHHHhcC------ccccCC---CceEEecHHHHHHHC-C-----------CCCHHHHHHHHHHHh--CcEEEE
Confidence 21 11222121 111111 246665554443332 1 2433 4466777764 566776
Q ss_pred eCCC--------CCCCC-ccc---cCCCCCceEEEEEee-----cCCeEEechhhhHHhHHHHHHHHHHcC-CCccChHH
Q 006717 526 NYPK--------AVKPF-YVR---LNDDGNTVAAFDMVV-----PKGGTVITGSQNEERIDMLNTRIKELG-LPREQYEW 587 (634)
Q Consensus 526 dyP~--------~~kPF-y~~---~~~d~~~~~~fDLlv-----P~ggEI~gGsqRe~r~e~L~~~~~~~g-l~~~~~~w 587 (634)
.-=. +.++. |.- .++++-....=|+++ ....||.+.+.| -+-+.|.++++..| .+...+.|
T Consensus 200 ~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~Qlk~~g~~dr~~l~~ 278 (330)
T TIGR00669 200 GIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAFELSSMGIR-VDEDALRHQLALTGDEDRLELEW 278 (330)
T ss_pred eccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCceeeeecceeE-ECHHHHHHHHHHcCCCccccCHH
Confidence 5322 22221 100 000110112334444 246899999999 57788899999999 67788999
Q ss_pred HHHHHhcC-CCCcceeeccHHHHHHHhcCCCCcCcccc
Q 006717 588 YLDLRRHG-TVKHSGFSFGFDLMVLFTTGLTDVRDAIP 624 (634)
Q Consensus 588 YLda~kyG-~PPhgGfGLGiERLvm~ltg~~nIRdVi~ 624 (634)
|+++ ..| +|+|+|+|||+|||+|+|+|..+|.+|..
T Consensus 279 h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 279 HQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred HHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 9999 777 89999999999999999999999999975
No 55
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.09 E-value=7.4e-10 Score=118.24 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=41.3
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFLC 441 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l~ 441 (634)
|+|++|+|||++..| .+|.|+|.|||.-.... ++.++...++.++++++
T Consensus 187 rif~~G~VyR~D~~D-atH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 187 RIIAPGRVYRNDSDD-ATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EEEEeeeEEEcCCCC-cccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 899999999999874 89999999999866664 47888888777777666
No 56
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=6.9e-10 Score=117.99 Aligned_cols=143 Identities=17% Similarity=0.314 Sum_probs=93.1
Q ss_pred ccchHHHHHHHHcc---cCceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHHHHHHHhhCcc
Q 006717 376 TVSGRLHLESYACA---LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFLCKWILEDCSK 450 (634)
Q Consensus 376 tvSpQL~le~la~g---~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l~~~vl~~~~~ 450 (634)
|.........|... =-|+|.+|+|||+|..| .+|+|||.|+|--..-- ++.+|+-+++++++.++..- .
T Consensus 175 THTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~D-aTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~~-----~ 248 (335)
T COG0016 175 THTSPVQARTLAENAKIPIKIFSPGRVYRNDTVD-ATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGED-----V 248 (335)
T ss_pred ccCcHhhHHHHHhCCCCCceEecccceecCCCCC-cccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCCC-----c
Confidence 44455555555543 35999999999999996 89999999999644333 35566666655555444200 0
Q ss_pred chhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCC
Q 006717 451 DLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKA 530 (634)
Q Consensus 451 dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~ 530 (634)
++.|-. .
T Consensus 249 ~vRfrp-------------------------------------------------------------------------s 255 (335)
T COG0016 249 KVRFRP-------------------------------------------------------------------------S 255 (335)
T ss_pred ceEeec-------------------------------------------------------------------------C
Confidence 010000 0
Q ss_pred CCCCccccCCCCCceEEEEEeecC---CeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHH
Q 006717 531 VKPFYVRLNDDGNTVAAFDMVVPK---GGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFD 607 (634)
Q Consensus 531 ~kPFy~~~~~d~~~~~~fDLlvP~---ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiE 607 (634)
-=||.-+ +.-.|+++|+ ..||+|+++= ++++ ++..|++++.|..| .||||+|
T Consensus 256 yFPFTEP-------S~Evdv~~~~~~~WlEi~G~Gmv--~P~V----L~~~G~~~~~~~Gf------------AfGlGlE 310 (335)
T COG0016 256 YFPFTEP-------SAEVDVYCPGCGGWLEILGCGMV--HPNV----LEAVGIDPEEYSGF------------AFGLGLE 310 (335)
T ss_pred CCCCCCC-------eEEEEEEEcCCCCEEEEeccccc--CHHH----HHhcCCCCCcceEE------------EEeecHH
Confidence 0133321 2335666652 5899999875 5665 45678776665433 7999999
Q ss_pred HHHHHhcCCCCcCcc
Q 006717 608 LMVLFTTGLTDVRDA 622 (634)
Q Consensus 608 RLvm~ltg~~nIRdV 622 (634)
||.|+..|+++||+.
T Consensus 311 RlAMLkygI~DIR~l 325 (335)
T COG0016 311 RLAMLKYGIPDIRDL 325 (335)
T ss_pred HHHHHHhCCcHHHHH
Confidence 999999999999975
No 57
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.04 E-value=9.6e-10 Score=113.26 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=42.5
Q ss_pred cCceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHHH
Q 006717 390 LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFLC 441 (634)
Q Consensus 390 ~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l~ 441 (634)
=-|+|++|+|||+|..+ .+|+|||.|+|.-.... ++.+++..++.++++++
T Consensus 102 p~kif~iG~VyR~D~~D-~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 102 PIKIFEIGKVYRRDEID-ATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp SEEEEEEEEEESSSCSB-SSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred CeEEEecCceEecCCcc-cccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 36999999999999995 89999999999987765 47788777777776665
No 58
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.89 E-value=7.7e-09 Score=114.84 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=35.4
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYF 437 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Li 437 (634)
|+|.||+|||+|..| .+|+|||.|+|--..-. ++.+++.++++++
T Consensus 344 k~fsigrVfR~d~iD-atH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~ 390 (492)
T PLN02853 344 RYFSIDRVFRNEAVD-RTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFF 390 (492)
T ss_pred EEEeccceecCCCCC-cccCccceeEEEEEEeCCCCHHHHHHHHHHHH
Confidence 999999999999996 89999999999766543 3666665554443
No 59
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.88 E-value=1.8e-07 Score=96.48 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 237 MRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 237 ~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.++|+.|...+++.|.++||.||.||+|...+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~ 33 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTE 33 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHH
Confidence 47899999999999999999999999998865
No 60
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.62 E-value=1.3e-06 Score=95.28 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
....-.++|..+...+++.|.++||.+|.||+|...+
T Consensus 9 ~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~ 45 (397)
T TIGR00442 9 FLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTE 45 (397)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHH
Confidence 3456678999999999999999999999999997653
No 61
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.61 E-value=5.3e-08 Score=108.65 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=30.8
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|+|.||+|||+|..| .+|+|||+|+|..+...+
T Consensus 358 ~k~fsigrVfR~d~~D-atH~~eFhQ~Eg~vi~~~ 391 (494)
T PTZ00326 358 KKYFSIDRVFRNETLD-ATHLAEFHQVEGFVIDRN 391 (494)
T ss_pred ceEEecCCEecCCCCC-CCcCceeEEEEEEEEeCC
Confidence 4999999999999996 899999999999887655
No 62
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.58 E-value=7.2e-07 Score=94.26 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=32.1
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDY 436 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~L 436 (634)
-|+|+||+|||++.. +.+|+|||++|+.-+... |+.|+...+|.+
T Consensus 151 irlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~l 197 (294)
T TIGR00468 151 IRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEF 197 (294)
T ss_pred ceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHH
Confidence 499999999999876 468999999999864422 344444444333
No 63
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.53 E-value=9.1e-08 Score=79.02 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=60.1
Q ss_pred cccceeeecc-CCCCCCCceEEEEEEcCccceeEEEEEeC-CCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeee
Q 006717 120 VPLREKLEAL-VPKPPPPSTVFLQVSDGSCVASLQVVVES-TLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKI 197 (634)
Q Consensus 120 V~vrGRi~~~-R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~-~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i 197 (634)
|+|+|+|.++ +. ++++.|+.|+|+|+. +||++-. ....+.+.+..|+.|.|+|++...+ .+++||.++++
T Consensus 1 V~v~G~V~~~~~~---~~~~~~~~l~D~tg~--i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~~---~~~~~l~~~~i 72 (75)
T PF01336_consen 1 VTVEGRVTSIRRS---GGKIVFFTLEDGTGS--IQVVFFNEEYERFREKLKEGDIVRVRGKVKRYN---GGELELIVPKI 72 (75)
T ss_dssp EEEEEEEEEEEEE---ETTEEEEEEEETTEE--EEEEEETHHHHHHHHTS-TTSEEEEEEEEEEET---TSSEEEEEEEE
T ss_pred CEEEEEEEEEEcC---CCCEEEEEEEECCcc--EEEEEccHHhhHHhhcCCCCeEEEEEEEEEEEC---CccEEEEECEE
Confidence 6799999999 55 889999999999975 9999987 2222346789999999999999876 34699999999
Q ss_pred EEE
Q 006717 198 LHI 200 (634)
Q Consensus 198 ~vl 200 (634)
++|
T Consensus 73 ~~l 75 (75)
T PF01336_consen 73 EIL 75 (75)
T ss_dssp EEE
T ss_pred EEC
Confidence 875
No 64
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.52 E-value=1.5e-06 Score=97.94 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=29.3
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS 424 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~ 424 (634)
-|+|+||+|||+|..+ ..|++||++++..+...
T Consensus 351 ~rlFeiGrVFR~e~~d-~~~l~Ef~ql~~~i~G~ 383 (489)
T PRK04172 351 QKYFSIGRVFRPDTID-ATHLPEFYQLEGIVMGE 383 (489)
T ss_pred eEEEEecceEcCCCCC-cccCCchheEEEEEEeC
Confidence 3999999999999874 68899999999998875
No 65
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.37 E-value=8.4e-07 Score=97.78 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=41.0
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC--HHHHHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ--LEDAMKCADDYFKFL 440 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d--~~dlm~l~E~Lik~l 440 (634)
-|+|++|+|||+|...+.+|+++|.++|.=++..+ +.|++.+++.|++.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 49999999999996434799999999998877654 788888877776554
No 66
>PLN02788 phenylalanine-tRNA synthetase
Probab=98.37 E-value=7.4e-06 Score=89.78 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHcccCceEEEccccccCcCCCCCccccccccchhhcC
Q 006717 383 LESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423 (634)
Q Consensus 383 le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af 423 (634)
.+.|..+-.|++.+|.|||++..| ++|.|+|.|+|.-+.+
T Consensus 140 ~~~l~~~~~~~~~~g~VyRrD~iD-~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 140 AELLRAGHTHFLVTGDVYRRDSID-ATHYPVFHQMEGVRVF 179 (402)
T ss_pred HHHHHhCCCcEEEEeeEeecCCCC-cccCccceeEEEEEEe
Confidence 334445667999999999999996 8999999999987775
No 67
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.22 E-value=3.5e-06 Score=81.60 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=50.1
Q ss_pred ceeeeccchHHHHHHHHc--ccC-------ceEEEccccccCcCC--CCCccccccccchhhcCCCHHHHHHHHHHHHHH
Q 006717 371 RQTYLTVSGRLHLESYAC--ALG-------NVYSFGPRFRAEKKE--SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 371 ~~~yLtvSpQL~le~la~--g~~-------rVYeIgp~FRaE~s~--T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
+..+|+-+.....=.+.. ... ++|++|+|||+|... +-.++-||+|.|.+....+ ++..+..++++..
T Consensus 55 ~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~ 133 (173)
T PF00587_consen 55 EEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLEL 133 (173)
T ss_dssp EEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred ccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHH
Confidence 346887777655444322 122 899999999999432 4679999999999998888 8888877777765
Q ss_pred HHH
Q 006717 440 LCK 442 (634)
Q Consensus 440 l~~ 442 (634)
+..
T Consensus 134 ~~~ 136 (173)
T PF00587_consen 134 YKE 136 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 68
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.16 E-value=7.9e-06 Score=82.58 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=50.3
Q ss_pred eeeccc--hHHHHHHHHc--ccCceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHH
Q 006717 373 TYLTVS--GRLHLESYAC--ALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFK 438 (634)
Q Consensus 373 ~yLtvS--pQL~le~la~--g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik 438 (634)
.+|+.| |.| ++.++. .--|+||||+|||++.. +..|+|||+||++.++.. |+.|++..+|.++.
T Consensus 60 ~~LR~sLlp~L-L~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~ 129 (218)
T cd00496 60 LLLRTHTSAVQ-ARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAK 129 (218)
T ss_pred EEEeccCcHHH-HHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 466655 344 344544 45699999999999876 357899999999999988 89999999888875
No 69
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=98.12 E-value=0.00013 Score=81.12 Aligned_cols=38 Identities=5% Similarity=0.190 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 231 TTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 231 ~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.....-.+.|..|...+++.|..+||.+|.||+|-..+
T Consensus 12 D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e 49 (430)
T CHL00201 12 DILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSS 49 (430)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHH
Confidence 34556778899999999999999999999999998753
No 70
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.09 E-value=1.1e-05 Score=81.21 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 237 MRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 237 ~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.+++..|...+++.|.+.||.||.||+|...+
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~ 33 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTV 33 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHH
Confidence 46889999999999999999999999999764
No 71
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=98.07 E-value=3.3e-05 Score=85.66 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=42.3
Q ss_pred eEEEEEeecCCe--EEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCcc
Q 006717 545 VAAFDMVVPKGG--TVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 545 ~~~fDLlvP~gg--EI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
+.-.|+.+ +|. ||+|+++- +.+. ++..|++++.|.. --||||+|||.|++.|+++||..
T Consensus 278 s~evdi~~-~g~WiEi~gcG~v--~p~v----l~~~g~~~~~~~g------------~AfGiGleRlaMl~~gi~DiR~~ 338 (460)
T TIGR00469 278 SWEIEIWF-KDEWLELCGCGII--RHDI----LLRAGVHPSETIG------------WAFGLGLDRIAMLLFDIPDIRLF 338 (460)
T ss_pred ceEEEEEE-CCeeEEEeeeccC--cHHH----HHHcCCCccceEE------------EEEEecHHHHHHHHcCccHHHHH
Confidence 35578888 555 99999875 3333 4566776543311 16899999999999999999963
No 72
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.00 E-value=2.3e-05 Score=81.16 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.8
Q ss_pred ceEEEccccccCcCCCCC--ccccccccchhhcCCCHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSK--HAAEMLMVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~r--HlpEFtmLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
|+|++++|||+|.....= ..-||+|.|.+....+..+..+..++++..
T Consensus 115 r~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~ 164 (255)
T cd00779 115 NLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQA 164 (255)
T ss_pred HHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHH
Confidence 899999999999543222 789999999999888776666655555543
No 73
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.89 E-value=9e-05 Score=77.23 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=38.2
Q ss_pred ceEEEccccccCcCCCCC--ccccccccchhhcCCCHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSK--HAAEMLMVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~r--HlpEFtmLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
|+|++++|||.|...+.= ..-||+|.|.+....+.++..+..+.++..
T Consensus 121 rl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~ 170 (264)
T cd00772 121 HLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSA 170 (264)
T ss_pred eEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHH
Confidence 899999999999653221 688999999988778888887777777643
No 74
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.80 E-value=0.00013 Score=83.75 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
...-++++..|...+++.|.+.||.||.||+|...
T Consensus 43 lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~ 77 (565)
T PRK09194 43 LPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPA 77 (565)
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcH
Confidence 34567899999999999999999999999999854
No 75
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.79 E-value=0.0012 Score=72.73 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 231 TTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 231 ~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.....-++.+..|...+++.|..+||.+|.||+|-..+
T Consensus 15 D~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e 52 (392)
T PRK12421 15 DVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLE 52 (392)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHH
Confidence 34567788999999999999999999999999998654
No 76
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.76 E-value=8e-05 Score=77.34 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=40.9
Q ss_pred ceEEEccccccCcCCC--CCccccccccchhhcCCCHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKES--SKHAAEMLMVETEIAFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T--~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l 440 (634)
|+|+|++|||+|.+.+ --..-||+|.|.+..|++.++..+..++++...
T Consensus 121 r~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 121 KINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred HHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 6899999999999753 226789999999999999999888888876443
No 77
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.69 E-value=0.00018 Score=78.83 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
....-.+++..+...+++.|.++||.||.||+|...
T Consensus 13 ~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~ 48 (412)
T PRK00037 13 ILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYT 48 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchH
Confidence 345667889999999999999999999999999664
No 78
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.67 E-value=0.00026 Score=81.36 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
...-+|++..|.+.+|+.|.+.||.||.||+|...
T Consensus 43 lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~ 77 (568)
T TIGR00409 43 LPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPA 77 (568)
T ss_pred CChHHHHHHHHHHHHHHHHHHcCCEEEECCccchH
Confidence 34567899999999999999999999999999984
No 79
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.67 E-value=9.6e-05 Score=76.48 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCC--cEEeeCCeeecCCCCCCCcceee
Q 006717 235 SVMRIRSSLTHATHTFFQNHG--FLYVQVPVITTTDSEGFSEKFQV 278 (634)
Q Consensus 235 av~riRs~l~~air~ff~~~g--F~eV~TPiLt~s~~EGa~e~F~V 278 (634)
.-.++|+.|...+|+.|...| |.||.||+|... +||.+
T Consensus 30 ~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~ 69 (254)
T cd00774 30 LGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKT 69 (254)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHhee
Confidence 456899999999999999985 999999999997 78875
No 80
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.63 E-value=0.00013 Score=77.27 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
..-.+++.+|.+.+++.+.+.||.||.||.|...+
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~ 83 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKE 83 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHH
Confidence 45779999999999999999999999999998764
No 81
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.62 E-value=0.00015 Score=81.65 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC---CC------CCcceeeeccccccccCCCCcccccccchHHHH
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS---EG------FSEKFQVTTLFDKREKEGPKTAKDIEGVNLDIL 304 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~---EG------a~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~ 304 (634)
-.-++++..|...+++.|.+.||.+|.||.|...+- ++ +.++|.|+....
T Consensus 41 P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~--------------------- 99 (477)
T PRK08661 41 PYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGG--------------------- 99 (477)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCC---------------------
Confidence 355789999999999999999999999999976643 11 345666642100
Q ss_pred HHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccch-----
Q 006717 305 KASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSG----- 379 (634)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSp----- 379 (634)
.=.+.+++|+...
T Consensus 100 --------------------------------------------------------------~~~~e~l~LrPtsE~~i~ 117 (477)
T PRK08661 100 --------------------------------------------------------------EKLEEKLALRPTSETIIY 117 (477)
T ss_pred --------------------------------------------------------------CccCceEEEecCCcHHHH
Confidence 0023455665554
Q ss_pred HHHHHHHHc--ccC-ceEEEccccccCcCCCC--CccccccccchhhcCCCHHHHHHHHHHHHH
Q 006717 380 RLHLESYAC--ALG-NVYSFGPRFRAEKKESS--KHAAEMLMVETEIAFSQLEDAMKCADDYFK 438 (634)
Q Consensus 380 QL~le~la~--g~~-rVYeIgp~FRaE~s~T~--rHlpEFtmLE~E~af~d~~dlm~l~E~Lik 438 (634)
.+|...+.+ -|. |+|++++|||+|.+ ++ -..-||+|.|.+.+|++.++..+.++.++.
T Consensus 118 ~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 118 PMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred HHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 223232322 233 78999999999998 54 488999999999999999888888887774
No 82
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.56 E-value=0.00025 Score=75.13 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
..-.+++.+|...+++.+.++||.||.||+|...+
T Consensus 27 p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~ 61 (298)
T cd00771 27 PKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKE 61 (298)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHH
Confidence 34578899999999999999999999999997764
No 83
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.51 E-value=0.00035 Score=77.47 Aligned_cols=117 Identities=15% Similarity=0.268 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC-CCCCc-------ceeeeccccccccCCCCcccccccchHHHHH
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS-EGFSE-------KFQVTTLFDKREKEGPKTAKDIEGVNLDILK 305 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~-EGa~e-------~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~ 305 (634)
..-.++..+|++.+++.+.++||.+|.||.|...+. ++.|. +|.|+
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~-------------------------- 223 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE-------------------------- 223 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--------------------------
Confidence 467899999999999999999999999999987643 22221 12110
Q ss_pred HHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHH
Q 006717 306 ASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLES 385 (634)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~ 385 (634)
+.+.||.-..+..+-.
T Consensus 224 ----------------------------------------------------------------~~~~~L~pTsE~~~~~ 239 (418)
T TIGR00414 224 ----------------------------------------------------------------DTDLYLIPTAEVPLTN 239 (418)
T ss_pred ----------------------------------------------------------------CCCEEEEeCCcHHHHH
Confidence 2345777766555544
Q ss_pred HHc-------ccC-ceEEEccccccCcCC------CCCccccccccchhhcCCCHHHHHHHHHHHHHHHH
Q 006717 386 YAC-------ALG-NVYSFGPRFRAEKKE------SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLC 441 (634)
Q Consensus 386 la~-------g~~-rVYeIgp~FRaE~s~------T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~ 441 (634)
+.. -|. |+|++++|||+|-+- +--..-||+|.|. ..|++-++..+..++++....
T Consensus 240 ~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s~~~~~~~~~~~~ 308 (418)
T TIGR00414 240 LHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEESAEELEEMTSDAE 308 (418)
T ss_pred HHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHHHHHHHHHHHHHH
Confidence 322 132 799999999999641 2337889999999 678888887777777765544
No 84
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.49 E-value=0.00041 Score=79.59 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
....-.++++.|...+++.|.+.||.||.||+|...+
T Consensus 201 ~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~ 237 (575)
T PRK12305 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSD 237 (575)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHH
Confidence 3456788999999999999999999999999998763
No 85
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.00058 Score=76.16 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=37.6
Q ss_pred CceEEEccccccCcCCC--CCccccccccchhhcCCCHHHHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKES--SKHAAEMLMVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T--~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
=|+|+|+++||+|.+.. -...-||+|-|.|....+.+++.+..++++..
T Consensus 130 lrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~ 180 (439)
T PRK12325 130 LNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVA 180 (439)
T ss_pred hHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHH
Confidence 38999999999996621 12678999999999888887777766555543
No 86
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.47 E-value=0.00051 Score=79.73 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
....-.+++..|...+++.|...||.||.||+|...+
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~ 301 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRE 301 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHH
Confidence 3456788999999999999999999999999998764
No 87
>PLN02908 threonyl-tRNA synthetase
Probab=97.47 E-value=0.00043 Score=81.29 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=41.5
Q ss_pred ceEEEccccccCcCC---CCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKE---SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 392 rVYeIgp~FRaE~s~---T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
|+|++|+|||+|.+- +-...-||||.|.+. |+..+++.+.+++++..+..
T Consensus 404 r~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~ 456 (686)
T PLN02908 404 RLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDY 456 (686)
T ss_pred hHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 899999999999883 445788999999998 88888888888887766554
No 88
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.45 E-value=0.00056 Score=76.97 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=41.0
Q ss_pred ceEEEccccccCcCCCC--CccccccccchhhcCCCHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESS--KHAAEMLMVETEIAFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~--rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l 440 (634)
|+|++++|||+|.+.+. -..-||+|.|.+.+|++.++..+..+.++...
T Consensus 127 r~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 127 KINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred HHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 88999999999998531 37889999999999999998888887777543
No 89
>PLN02837 threonine-tRNA ligase
Probab=97.28 E-value=0.00044 Score=80.19 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=40.3
Q ss_pred ceEEEccccccCcCC---CCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKE---SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 392 rVYeIgp~FRaE~s~---T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
|+|++|+|||+|.+. +--..-||+|.|.+. |+..++..+..++++..+-.
T Consensus 331 r~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~ 383 (614)
T PLN02837 331 RVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEE 383 (614)
T ss_pred hhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 789999999999872 133778999999995 99988888888887765443
No 90
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.28 E-value=0.0015 Score=74.88 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
...-.+++..|...+++.|.+.||.||.||+|...
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~ 230 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDL 230 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 34567899999999999999999999999999865
No 91
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.25 E-value=0.0017 Score=68.53 Aligned_cols=37 Identities=8% Similarity=0.286 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.+..-.+.|..|...+++.|..+||.+|.||++-..+
T Consensus 14 ~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e 50 (281)
T PRK12293 14 YFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQ 50 (281)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehh
Confidence 3456678999999999999999999999999997654
No 92
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.22 E-value=0.001 Score=74.00 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=50.5
Q ss_pred ceeeeccchHHHHHHHHc-------cc-CceEEEccccccCcCC------CCCccccccccchhhcCCCHHHHHHHHHHH
Q 006717 371 RQTYLTVSGRLHLESYAC-------AL-GNVYSFGPRFRAEKKE------SSKHAAEMLMVETEIAFSQLEDAMKCADDY 436 (634)
Q Consensus 371 ~~~yLtvSpQL~le~la~-------g~-~rVYeIgp~FRaE~s~------T~rHlpEFtmLE~E~af~d~~dlm~l~E~L 436 (634)
.+.||.-..+..+=.+.. -| =|+|++++|||+|-+. +--..-||+|.|.+ .|+.-++..+..++|
T Consensus 223 ~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~ 301 (425)
T PRK05431 223 DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEEL 301 (425)
T ss_pred CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHH
Confidence 456787777665544322 13 2899999999999752 22378899999999 788888888877777
Q ss_pred HHHHHH
Q 006717 437 FKFLCK 442 (634)
Q Consensus 437 ik~l~~ 442 (634)
+.....
T Consensus 302 l~~~~~ 307 (425)
T PRK05431 302 TANAEE 307 (425)
T ss_pred HHHHHH
Confidence 755443
No 93
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.21 E-value=0.0014 Score=76.37 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=38.4
Q ss_pred ceEEEccccccCcCC---CCCccccccccchhhcCCCHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKE---SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLC 441 (634)
Q Consensus 392 rVYeIgp~FRaE~s~---T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~ 441 (634)
|+|++|+|||.|.+. +--..-||+|.|.+ .|++-++..+..++++..+.
T Consensus 357 r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~ 408 (639)
T PRK12444 357 RMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQID 408 (639)
T ss_pred eeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHHH
Confidence 899999999999864 22267899999999 88887777766666665543
No 94
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.16 E-value=0.0013 Score=75.18 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=39.7
Q ss_pred ceEEEccccccCcCCCC----CccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESS----KHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~----rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
|.|++|+|||.|.+. . -..-||||.|... |++.+++.+.+.+++..+..
T Consensus 251 R~~e~g~vfR~E~sg-~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 251 RFSEFGHVYRWEKKG-ELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred hhEEecceecCCCCC-CccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 899999999999984 3 4789999999998 88887777777666655543
No 95
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=97.11 E-value=0.0022 Score=68.24 Aligned_cols=35 Identities=11% Similarity=0.288 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
..-.++|..|...+++.|.++||.+|+||+|...+
T Consensus 5 p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~ 39 (314)
T TIGR00443 5 PEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLD 39 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHH
Confidence 45578899999999999999999999999988753
No 96
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.09 E-value=0.0026 Score=69.88 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
....-.+.|..+...+++.|.++||.+|.||+|...
T Consensus 12 ~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~ 47 (391)
T PRK12292 12 LLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYL 47 (391)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhH
Confidence 445677899999999999999999999999999653
No 97
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.03 E-value=0.0012 Score=76.46 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=41.8
Q ss_pred ceEEEcc-ccccCcCC---CCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGP-RFRAEKKE---SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 392 rVYeIgp-~FRaE~s~---T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
|+|++|+ |||+|.+. +-..+-||+|.|.+.-..+.++.++..++++..+..
T Consensus 310 r~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 310 KMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILE 364 (613)
T ss_pred hhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 7899999 99999862 234788999999998776788998888888776654
No 98
>PLN02530 histidine-tRNA ligase
Probab=97.01 E-value=0.0032 Score=71.16 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
.+..-.++|..|...+++.|...||.||.||+|-..
T Consensus 79 ~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~ 114 (487)
T PLN02530 79 FPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESE 114 (487)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchH
Confidence 345667899999999999999999999999999874
No 99
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=96.98 E-value=0.0033 Score=66.33 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
+..-++.+..|...+++.|..+||.+|+||++...+
T Consensus 6 ~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~ 41 (311)
T PF13393_consen 6 LPEEARKRERIESKLREVFERHGYEEIETPLLEYYE 41 (311)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecH
Confidence 345678899999999999999999999999998753
No 100
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=96.92 E-value=0.11 Score=53.97 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=120.5
Q ss_pred CceEEEcccccc-CcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcc
Q 006717 391 GNVYSFGPRFRA-EKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQS 469 (634)
Q Consensus 391 ~rVYeIgp~FRa-E~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~ 469 (634)
+.+|+=-.+.|. |++-+..|.-=--+-|||....+-+-.++...+.+..+...+... ++ .++..++ +..
T Consensus 90 eGlythM~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~t---e~-av~~~~~------~~~ 159 (330)
T COG2502 90 EGLYTHMKALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRET---EL-AVSAEFG------LAP 159 (330)
T ss_pred CceeeechhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHHH---HH-HHHHhcC------Ccc
Confidence 567887788886 665567787777778888877766555555555555555544332 11 1222222 111
Q ss_pred ccCCCCceeeHHHHHHHHHHhcccccccccccccccC-hHHHHhHHhhhCCccEEEEe--------CCCCCCC-CccccC
Q 006717 470 VISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALT-AEHLSYLADEIYKRPVIVYN--------YPKAVKP-FYVRLN 539 (634)
Q Consensus 470 ~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~-~e~Er~L~e~~~~~PvfVtd--------yP~~~kP-Fy~~~~ 539 (634)
.+. ..|+|..+-++.... . +|+ .+.|+.+++.+ +.||++. +|.+.++ =|.--+
T Consensus 160 ~LP---~~ItFihseeL~~ry-P-----------~L~~k~RE~ai~Ke~--gAvFligIGg~LsdG~~hd~RaPdYDdWt 222 (330)
T COG2502 160 FLP---DQITFIHSQELVARY-P-----------DLDPKGRERAIAKEL--GAVFLIGIGGKLSDGKPHDVRAPDYDDWT 222 (330)
T ss_pred cCc---cceEEeehHHHHHhC-C-----------CCCcchhhHHHHHhh--CcEEEEecccccCCCCcCCCCCCCccccC
Confidence 111 346665554433221 1 233 23466666654 3455543 4444432 221110
Q ss_pred --CCCCc-eEEEEEeec-----CCeEEechhhhHHhHHHHHHHHHHcCC-CccChHHHHHHHhcCCCCcceeeccHHHHH
Q 006717 540 --DDGNT-VAAFDMVVP-----KGGTVITGSQNEERIDMLNTRIKELGL-PREQYEWYLDLRRHGTVKHSGFSFGFDLMV 610 (634)
Q Consensus 540 --~d~~~-~~~fDLlvP-----~ggEI~gGsqRe~r~e~L~~~~~~~gl-~~~~~~wYLda~kyG~PPhgGfGLGiERLv 610 (634)
...++ ...=|+++- ...|+.+.+.|. +-+.|..++.-.|. |...++|.-+++.--+|-+-|-|||=-||+
T Consensus 223 t~se~~~~gLNGDilvwn~~l~~afElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~ 301 (330)
T COG2502 223 TPSELGYKGLNGDILVWNPVLGDAFELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLC 301 (330)
T ss_pred CcccccccccCCcEEEechhccchheeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHH
Confidence 00011 122344442 358999999984 55666666665554 233478888888877999999999999999
Q ss_pred HHhcCCCCcCcccc
Q 006717 611 LFTTGLTDVRDAIP 624 (634)
Q Consensus 611 m~ltg~~nIRdVi~ 624 (634)
|+|+..++|-+|..
T Consensus 302 M~lL~k~HIGeVQ~ 315 (330)
T COG2502 302 MLLLQKKHIGEVQA 315 (330)
T ss_pred HHHhcccccceeee
Confidence 99999999999864
No 101
>PLN02972 Histidyl-tRNA synthetase
Probab=96.85 E-value=0.005 Score=72.66 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 231 TTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 231 ~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
.....-+++|..|...+++.|..+||.+|.||+|-..
T Consensus 335 D~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~ 371 (763)
T PLN02972 335 DFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELR 371 (763)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccch
Confidence 4567888999999999999999999999999998653
No 102
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.69 E-value=0.0069 Score=67.16 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=33.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 231 TTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 231 ~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.....-.+++..|...+++.|..+||.||.||+|-..+
T Consensus 12 d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~ 49 (423)
T PRK12420 12 DYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYE 49 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHH
Confidence 34566778899999999999999999999999998753
No 103
>PLN02678 seryl-tRNA synthetase
Probab=96.53 E-value=0.0046 Score=69.22 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 235 SVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 235 av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
...+++.+|++.+++++.++||++|.||.|...+
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~ 205 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKD 205 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHH
Confidence 5589999999999999999999999999998754
No 104
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.52 E-value=0.0067 Score=68.15 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=38.8
Q ss_pred ceEEEccccccCcCCCCC---ccccccccchhhcCCCHHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSK---HAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKW 443 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~r---HlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~ 443 (634)
|+.|+|+|||+|-+ +.. ..-||+|.|.+ .|++-+++.+.+..++..+...
T Consensus 188 r~aq~g~~~RnE~s-~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~~ 240 (456)
T PRK04173 188 GIAQIGKSFRNEIT-PRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKNW 240 (456)
T ss_pred eeeEEchhHhCccC-CCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHHH
Confidence 89999999999988 432 33899999997 8988877777776666555443
No 105
>PLN02320 seryl-tRNA synthetase
Probab=96.51 E-value=0.0069 Score=68.57 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=38.1
Q ss_pred ceEEEccccccCcCC------CCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKE------SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 392 rVYeIgp~FRaE~s~------T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
|++++|+|||.|-+. +--..-+|+++|.. .|+.-++..+..|+|+..+..
T Consensus 315 Ry~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~-if~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 315 KYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMF-VICRPEESESFHEELIQIEED 370 (502)
T ss_pred eeEEeccccccccccCCCcCCCceeeeeeecccEE-EEECHHHHHHHHHHHHHHHHH
Confidence 899999999999661 22267789999995 577778888888877765543
No 106
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.36 E-value=0.03 Score=46.87 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=54.9
Q ss_pred cccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeE
Q 006717 120 VPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKIL 198 (634)
Q Consensus 120 V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~ 198 (634)
++|.|-|..+|. ..+| .+|+.|.|+++. +.|++-.+.. .+...+..|+.|.|+|.+...+ ..+.+.|.++++.
T Consensus 2 ~~v~g~v~~i~~-tk~g-~~~~~L~D~~~~--i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~--~~~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKR-PSSG-HLYFTLKDEDAS--IRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYE--PRGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEE-CCCc-EEEEEEEeCCeE--EEEEEEcchhhhCCCCCCCCCEEEEEEEEEEEC--CCCEEEEEEEEEE
Confidence 578888888875 3345 999999999974 9998866532 2456789999999999998642 1356788888774
No 107
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.18 E-value=0.044 Score=46.51 Aligned_cols=72 Identities=11% Similarity=0.191 Sum_probs=54.1
Q ss_pred cccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCC-CCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeE
Q 006717 120 VPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTL-VSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKIL 198 (634)
Q Consensus 120 V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~-~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~ 198 (634)
|+|.|-|.+.+. .|+=.|+.|.|+.. .|.||+-... ......+..|+-|.|.|.+.. + .+.+.|.+++++
T Consensus 1 v~v~GeVs~~~~---~~GHvyfsLkD~~a--~i~cv~f~~~~~~~~~~l~~Gd~V~v~G~v~~-~---~G~~ql~v~~i~ 71 (73)
T cd04487 1 VHIEGEVVQIKQ---TSGPTIFTLRDETG--TVWAAAFEEAGVRAYPEVEVGDIVRVTGEVEP-R---DGQLQIEVESLE 71 (73)
T ss_pred CEEEEEEecccc---CCCCEEEEEEcCCE--EEEEEEEchhccCCcCCCCCCCEEEEEEEEec-C---CeEEEEEEeeEE
Confidence 567888887653 44457889999875 4999885432 223456889999999999875 4 688999999998
Q ss_pred EE
Q 006717 199 HI 200 (634)
Q Consensus 199 vl 200 (634)
++
T Consensus 72 ~~ 73 (73)
T cd04487 72 VL 73 (73)
T ss_pred EC
Confidence 75
No 108
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.035 Score=62.00 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
..-.-+..|..|...+|+-|.+.||.||.||++-..
T Consensus 13 ~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~t 48 (429)
T COG0124 13 FLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYT 48 (429)
T ss_pred cChHHHHHHHHHHHHHHHHHHHcCCEeccCccccch
Confidence 445578899999999999999999999999998765
No 109
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.82 E-value=0.038 Score=60.68 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=33.2
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCC-C-H---HHHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS-Q-L---EDAMKCADDYFKF 439 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~-d-~---~dlm~l~E~Lik~ 439 (634)
-|.|.+|+|||.|. -+.-||||+.+|.-.. + . -+++.++-+.++.
T Consensus 83 ~R~~Y~g~VfR~~~----gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 83 ARYAYLGEVFRQRR----DRASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred eEEEEEccEEECCC----CCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 48999999999992 2467999999999764 3 2 3666666666543
No 110
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.52 E-value=0.018 Score=65.48 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=39.6
Q ss_pred ceEE-EccccccCc--CCCCCccccccccchhhcCCCHHHHHHHHHHHHHH
Q 006717 392 NVYS-FGPRFRAEK--KESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 392 rVYe-Igp~FRaE~--s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
|+|+ .|+|||+|. .++-...-||+|.|.- .|++-+++.+..++++.+
T Consensus 337 rl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 337 KFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIRDELLKY 386 (517)
T ss_pred HHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHHHHHHHH
Confidence 7899 569999996 4445588899999998 899999999999999843
No 111
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.0051 Score=66.24 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=43.3
Q ss_pred HHc-cc--CceEEEccccccCcCCCCCccccccccchhhcCCC--HHHHHHHHHHHHH
Q 006717 386 YAC-AL--GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ--LEDAMKCADDYFK 438 (634)
Q Consensus 386 la~-g~--~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d--~~dlm~l~E~Lik 438 (634)
||. || .|+|.|-++||||-.| .+||+||.|+|--.+-.+ +-|+|-+.++++.
T Consensus 326 LAk~~f~p~K~FSIDrVFRNEtvD-aTHLAEFHQVEGviad~gltLgdLig~l~~ff~ 382 (483)
T KOG2784|consen 326 LAKKGFKPAKYFSIDRVFRNETVD-ATHLAEFHQVEGVIADKGLTLGDLIGILMEFFT 382 (483)
T ss_pred HHhCCCCcccccchhhhhhccccc-hHHHHHHhhhceeeecCCCcHHHHHHHHHHHHh
Confidence 444 55 5899999999999996 899999999999888764 7888888877653
No 112
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.04 E-value=0.19 Score=44.41 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=54.7
Q ss_pred cccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCC---CCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEee
Q 006717 120 VPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTL---VSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEK 196 (634)
Q Consensus 120 V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~---~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~ 196 (634)
++|+|-|.+.+. +..|+=.|+.|.|++.. |.||+=... ......+..||-|.|.|.+..-. .|.+++
T Consensus 1 ~~v~GeVs~~~~-~~~sGH~yFtlkD~~~~--i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~-------ql~ve~ 70 (91)
T cd04482 1 YRVTGKVVEEPR-TIEGGHVFFKISDGTGE--IDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGT-------TLNLEK 70 (91)
T ss_pred CEEEEEEeCCee-cCCCCCEEEEEECCCcE--EEEEEECcccccccccCCCCCCCEEEEEEEEecCC-------EEEEEE
Confidence 478899988764 22455578899998864 899875443 23445789999999999986532 689999
Q ss_pred eEEEecC
Q 006717 197 ILHIGTV 203 (634)
Q Consensus 197 i~vlg~~ 203 (634)
++++|..
T Consensus 71 l~~~glg 77 (91)
T cd04482 71 LRVIRLA 77 (91)
T ss_pred EEECCCc
Confidence 9988764
No 113
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=94.65 E-value=0.14 Score=45.72 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=59.1
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCC-CCCCCCcEEEEEEEEecCCCCCCceEEEEEe
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPS-KIRPIGTCLMVEGVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~-~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~ 195 (634)
..|||.|-|.+.+. ..++-+|++|.|+.. .|+|++-.... ... ..+..|+-|.|.|.+.--+ ..|.+.|.++
T Consensus 22 ~~vwV~GEIs~~~~--~~~gh~YftLkD~~a--~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~--~~G~~sl~v~ 95 (99)
T PF13742_consen 22 PNVWVEGEISNLKR--HSSGHVYFTLKDEEA--SISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYE--PRGSLSLIVE 95 (99)
T ss_pred CCEEEEEEEeecEE--CCCceEEEEEEcCCc--EEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEEC--CCcEEEEEEE
Confidence 68999999999986 256779999999874 69999865432 233 4689999999999998765 2577999988
Q ss_pred eeE
Q 006717 196 KIL 198 (634)
Q Consensus 196 ~i~ 198 (634)
+|.
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
No 114
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.56 E-value=0.085 Score=58.77 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS 269 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~ 269 (634)
....++--+|++.+=++..++||+||.+|.|...++
T Consensus 171 ~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~ 206 (429)
T COG0172 171 GKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLES 206 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHH
Confidence 455677778888888888899999999999998754
No 115
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=94.33 E-value=0.072 Score=43.22 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=37.4
Q ss_pred HHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006717 305 KASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLES 347 (634)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (634)
.+.|+++|..|.+||.++..++.|.+||+.|...++.++.+..
T Consensus 2 ~~~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll~LK~~~~~~tg 44 (56)
T PF00458_consen 2 EAQIAAQGDKVRKLKAEKADKEEIDAAVAKLLELKAELKELTG 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5689999999999999999999999999999999998877754
No 116
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=94.18 E-value=0.12 Score=54.06 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=53.7
Q ss_pred ccccccceeeeccCCCCCC----CceEEEEEEcCccceeEEEEEeCCCC---CC-CCCCCCCcEEEEEEEEecCCCCCCc
Q 006717 117 SNNVPLREKLEALVPKPPP----PSTVFLQVSDGSCVASLQVVVESTLV---SP-SKIRPIGTCLMVEGVLKQPSVQGKH 188 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~----G~l~Fl~l~Dgs~~~~lQvV~~~~~~---~~-~~~l~~Gs~V~V~G~l~~~~~~~~q 188 (634)
-..|+|.|.|.+..- + .+..|+.|.|+||...|.|++..... .. ...+ .|+.|.|.|.+. .+
T Consensus 66 I~~v~i~G~Vv~~~~---~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vs------r~ 135 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDY---KWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVS------RN 135 (256)
T ss_dssp E-EEEEEEEEEEEEE---EE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEE------SS
T ss_pred cEEEEEEEEEEEEEE---EeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEc------cC
Confidence 357889999999974 3 47899999999994459999875421 11 1234 999999999998 35
Q ss_pred eEEEEEeeeEEEe
Q 006717 189 AVELKVEKILHIG 201 (634)
Q Consensus 189 ~vEL~~~~i~vlg 201 (634)
..||+++.+.++.
T Consensus 136 ~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 136 ERQLDVERIELVR 148 (256)
T ss_dssp SEEEEEEEEEEET
T ss_pred cEEEEEEEEEccC
Confidence 7889999988763
No 117
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=93.97 E-value=0.26 Score=38.99 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=49.3
Q ss_pred cceeeeccCCCCCCCceEEEEEEcCc-cceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeee
Q 006717 122 LREKLEALVPKPPPPSTVFLQVSDGS-CVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKI 197 (634)
Q Consensus 122 vrGRi~~~R~~~~~G~l~Fl~l~Dgs-~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i 197 (634)
|.|.|..++.++..+...++.|.|++ +. +.|++-.+.. .+...+..|+.|.|+|.+... .+...|.+.++
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~--i~~~~~~~~~~~~~~~~~~g~~v~v~g~v~~~----~~~~~l~~~~~ 73 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGT--IRVTLFGELAEELENLLKEGQVVYIKGKVKKF----RGRLQLIVESI 73 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCE--EEEEEEchHHHHHHhhccCCCEEEEEEEEEec----CCeEEEEeeee
Confidence 67888888762211378999999999 64 8888765432 123468899999999999764 24566766543
No 118
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.21 Score=56.84 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=40.8
Q ss_pred ceEEEccccccCcCCC--CCccccccccchhhcCCCHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKES--SKHAAEMLMVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T--~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
++|||...||+|--.+ --..-||+|=|.|..++|.+++....++++..
T Consensus 131 ~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~ 180 (500)
T COG0442 131 KLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDA 180 (500)
T ss_pred ceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHH
Confidence 7899999999997631 12788999999999999999999988888754
No 119
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=93.83 E-value=0.21 Score=56.87 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=51.0
Q ss_pred eeeeccchHHHHHHHHc-------cc-CceEEEc-cccccCcC--CCCCccccccccchhhcCCCHHHHHHHHHHHHHHH
Q 006717 372 QTYLTVSGRLHLESYAC-------AL-GNVYSFG-PRFRAEKK--ESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 372 ~~yLtvSpQL~le~la~-------g~-~rVYeIg-p~FRaE~s--~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l 440 (634)
+++|+-+.+..+=.+.. .+ -++|++. +|||.|.. +.-..+-||.|.|.-. +++.++..+..++++...
T Consensus 309 ~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 309 GYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIRDKTLELA 387 (520)
T ss_pred ceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 46687777766543221 23 3788955 79999984 4555889999999988 999999999998888544
Q ss_pred H
Q 006717 441 C 441 (634)
Q Consensus 441 ~ 441 (634)
.
T Consensus 388 ~ 388 (520)
T TIGR00415 388 E 388 (520)
T ss_pred H
Confidence 3
No 120
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.51 E-value=0.11 Score=60.18 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=37.6
Q ss_pred CceEEEccccccCcCC---CCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKE---SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~---T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
-|++++|.|||.|.|- +-+.+-+|||=|.-. |+..+.+.+.+.+.+..+..
T Consensus 302 ~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~ 355 (589)
T COG0441 302 LRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILE 355 (589)
T ss_pred hhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHH
Confidence 3889999999999872 234568999988854 66677777777666665544
No 121
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=93.46 E-value=0.5 Score=39.36 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=45.8
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEec
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~ 202 (634)
.++++.|.|+++. +.|++-.+.......+..|..|.|.|.+... .+..+|.+.++..+..
T Consensus 19 ~~~~~~l~D~tg~--i~~~~f~~~~~~~~~l~~g~~v~v~G~v~~~----~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 19 PYLALTLQDKTGE--IEAKLWDASEEDEEKFKPGDIVHVKGRVEEY----RGRLQLKIQRIRLVTE 78 (83)
T ss_pred cEEEEEEEcCCCe--EEEEEcCCChhhHhhCCCCCEEEEEEEEEEe----CCceeEEEEEEEECCc
Confidence 6899999999996 9998865433334568999999999999753 2467888888776543
No 122
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=93.27 E-value=0.65 Score=41.14 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=47.2
Q ss_pred cceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC---------------------CCCCCCCCCcEEEEEEEEe
Q 006717 122 LREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV---------------------SPSKIRPIGTCLMVEGVLK 180 (634)
Q Consensus 122 vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~---------------------~~~~~l~~Gs~V~V~G~l~ 180 (634)
|-|.|.+++. .....-+.|.||||. |-|++-.... .....+..|+.|.|.|.+.
T Consensus 2 ivG~V~sv~~---~~~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~ 76 (92)
T cd04483 2 ILGTVVSRRE---RETFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIR 76 (92)
T ss_pred eEEEEEEEEe---cCCeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEe
Confidence 4577777776 334556689999996 8888754322 1234589999999999998
Q ss_pred cCCCCCCceEEEEEeeeE
Q 006717 181 QPSVQGKHAVELKVEKIL 198 (634)
Q Consensus 181 ~~~~~~~q~vEL~~~~i~ 198 (634)
.=. +...|.++.+.
T Consensus 77 ~fr----g~~ql~i~~~~ 90 (92)
T cd04483 77 TYR----GEREINASVVY 90 (92)
T ss_pred ccC----CeeEEEEEEEE
Confidence 643 45667776654
No 123
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=93.18 E-value=0.81 Score=39.81 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=54.3
Q ss_pred cccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC----CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEe
Q 006717 120 VPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 120 V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~ 195 (634)
|.+-|.|.++.. .+...=+.|.|+||. |-+.+-..... ....+..|+.|.|.|.+..-. +...|.+.
T Consensus 2 v~~vG~V~~~~~---~~~~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~----g~~ql~i~ 72 (95)
T cd04478 2 VTLVGVVRNVEE---QSTNITYTIDDGTGT--IEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQ----GKKSIMAF 72 (95)
T ss_pred EEEEEEEEeeeE---cccEEEEEEECCCCc--EEEEEeCCCCCcccccccccccCCEEEEEEEEcccC----CeeEEEEE
Confidence 567788888876 455555689999985 88887554322 345689999999999997643 56778888
Q ss_pred eeEEEec
Q 006717 196 KILHIGT 202 (634)
Q Consensus 196 ~i~vlg~ 202 (634)
.+..+..
T Consensus 73 ~i~~v~d 79 (95)
T cd04478 73 SIRPVTD 79 (95)
T ss_pred EEEEeCC
Confidence 8776653
No 124
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=93.08 E-value=0.11 Score=59.38 Aligned_cols=83 Identities=8% Similarity=0.129 Sum_probs=60.2
Q ss_pred ecCCCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCC
Q 006717 109 VLGGSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGK 187 (634)
Q Consensus 109 v~~~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~ 187 (634)
+.++++..+++|.|+|-|.++++ .++-+-+.|+|+++. +++-.-.... -.-..+..|++|.|.|.+....
T Consensus 205 i~~id~~ig~tV~I~GeV~qikq---T~GPTVFtltDetg~--i~aAAFe~aGvRAyP~IevGdiV~ViG~V~~r~---- 275 (715)
T COG1107 205 IDDLDEMIGKTVRIEGEVTQIKQ---TSGPTVFTLTDETGA--IWAAAFEEAGVRAYPEIEVGDIVEVIGEVTRRD---- 275 (715)
T ss_pred HHHHHhhcCceEEEEEEEEEEEE---cCCCEEEEEecCCCc--eehhhhccCCcccCCCCCCCceEEEEEEEeecC----
Confidence 55667788899999999999998 666666799999997 8874322111 1125689999999999998764
Q ss_pred ceEEEEEeeeEEE
Q 006717 188 HAVELKVEKILHI 200 (634)
Q Consensus 188 q~vEL~~~~i~vl 200 (634)
+.+.|.+..++.|
T Consensus 276 g~lQiE~~~me~L 288 (715)
T COG1107 276 GRLQIEIEAMEKL 288 (715)
T ss_pred CcEEEeehhhHHh
Confidence 4455555555544
No 125
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=92.74 E-value=0.53 Score=49.67 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 236 VMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 236 v~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
-+--|..+...+++.|.++||.+|.||++-..+
T Consensus 6 ~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d 38 (272)
T PRK12294 6 QLIALKESETAFLKYFNKADYELVDFSVIEKLD 38 (272)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHH
Confidence 345577888999999999999999999996654
No 126
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=92.00 E-value=0.2 Score=41.34 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=43.4
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEE
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHI 200 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vl 200 (634)
.++|+.|.|+++. +.|++-.... .+...+..|..|.|.|.+.... +..+|.+.++..+
T Consensus 19 ~~~~~~l~D~tg~--~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~~~----~~~~l~~~~i~~~ 77 (84)
T cd04485 19 RMAFVTLEDLTGS--IEVVVFPETYEKYRDLLKEDALLLVEGKVERRD----GGLRLIAERIEDL 77 (84)
T ss_pred EEEEEEEEeCCCe--EEEEECHHHHHHHHHHhcCCCEEEEEEEEEecC----CceEEEeeccccH
Confidence 5899999999996 8888754321 2345688999999999997632 4678888776544
No 127
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=91.71 E-value=0.57 Score=46.88 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=61.6
Q ss_pred eeecCCCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC------CCCCCCCCcEEEEEEEEe
Q 006717 107 IRVLGGSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS------PSKIRPIGTCLMVEGVLK 180 (634)
Q Consensus 107 ~~v~~~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~------~~~~l~~Gs~V~V~G~l~ 180 (634)
..+....+...+.|.|.|-|.+.+. +-++++.|+.|+||+|- +-+|...+... ....+..|.+|.|+|.+.
T Consensus 41 a~i~eg~G~l~e~v~vkg~V~~~~n-~~~~gi~~l~lndgtGt--i~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~ 117 (204)
T COG4085 41 ATINEGDGRLNEEVTVKGEVTADQN-AIGGGIESLVLNDGTGT--ITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVE 117 (204)
T ss_pred eEEecCCceeeccceeeeEEEeeec-ccccceEEEEEECCCCc--EEEEEecChhHhHhhcCCCCccccCcEEEEEEEEE
Confidence 3455667778889999999988874 45779999999999995 99887654322 123466999999999998
Q ss_pred cCCCCCCceEEEEEee
Q 006717 181 QPSVQGKHAVELKVEK 196 (634)
Q Consensus 181 ~~~~~~~q~vEL~~~~ 196 (634)
.-+ +..|+.+..
T Consensus 118 ~yr----G~~eVkvnq 129 (204)
T COG4085 118 EYR----GSSEVKVNQ 129 (204)
T ss_pred EeC----CCceeeccC
Confidence 765 455666554
No 128
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=91.09 E-value=1.2 Score=41.61 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=52.3
Q ss_pred cccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEe
Q 006717 116 ISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 116 ~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~ 195 (634)
.+..|.++|-|..--. .=.| ..+|+|+- |+|.++....+ ...++..|-|.+.|.+-+-- ...||.|.
T Consensus 56 Dda~V~l~GnIv~qi~-----~D~y-~FrD~sGe--I~VeIdd~~w~-g~tv~P~dkV~I~GevDk~~----~~~eIdV~ 122 (128)
T COG3111 56 DDAWVSLEGNIVRQIG-----DDRY-VFRDASGE--INVDIDDKVWN-GQTVTPKDKVRIQGEVDKDW----NSVEIDVK 122 (128)
T ss_pred cCCeEEEEeeEEEeeC-----CceE-EEEcCCcc--EEEEecccccC-CcccCcccEEEEEeEEcCCC----ccceeEhh
Confidence 4457889999887643 3233 45999995 99999876532 25688999999999997642 46788888
Q ss_pred eeEEE
Q 006717 196 KILHI 200 (634)
Q Consensus 196 ~i~vl 200 (634)
.|+.+
T Consensus 123 ~I~k~ 127 (128)
T COG3111 123 HIEKL 127 (128)
T ss_pred heEec
Confidence 77654
No 129
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=91.08 E-value=0.31 Score=37.88 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=36.4
Q ss_pred HHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006717 306 ASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHL 345 (634)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (634)
..|+++|+.|-+||.+++.++.+.++|+.|...++.++.+
T Consensus 3 ~~I~~QGekVR~LKa~ka~k~~i~~eV~~LL~LK~~~k~~ 42 (45)
T cd00939 3 KEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALA 42 (45)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999877654
No 130
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.33 E-value=1.2 Score=48.55 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 236 VMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 236 v~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
-+|.-+.+++.++.=|++-|=.+|.-|+|++.
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~ 82 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSK 82 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChH
Confidence 46888999999999999999999999999875
No 131
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=90.03 E-value=2 Score=40.36 Aligned_cols=91 Identities=18% Similarity=0.295 Sum_probs=52.0
Q ss_pred cceeeeeecCCCCCcccccccceeee--ccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEE
Q 006717 102 FFRTIIRVLGGSAGISNNVPLREKLE--ALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVL 179 (634)
Q Consensus 102 ~fr~~~~v~~~~~~~~~~V~vrGRi~--~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l 179 (634)
.|....++.......++.|+|.|.|. ++...+....+.| .|.|+.. .+.|+...... ...+.|..|.|+|.+
T Consensus 35 yy~t~se~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~--~i~V~Y~G~~P---d~F~eg~~VVv~G~~ 108 (131)
T PF03100_consen 35 YYLTPSELAAEPQKVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGK--EIPVVYTGPLP---DLFREGQGVVVEGRL 108 (131)
T ss_dssp -EE-TTTTTTTST-TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS---EEEEEEES--C---TT--TTSEEEEEEEE
T ss_pred EEcCHHHHhhccccCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCc--EEEEEECCCCC---ccccCCCeEEEEEEE
Confidence 34455555555555668899999987 4433233557887 5678854 49999887654 346889999999999
Q ss_pred ecCCCCCCceEEEEEeeeEEEecCCCCCC
Q 006717 180 KQPSVQGKHAVELKVEKILHIGTVDHDKY 208 (634)
Q Consensus 180 ~~~~~~~~q~vEL~~~~i~vlg~~~~~~y 208 (634)
.. .+ -+++++ +|.+|+ ++|
T Consensus 109 ~~-----~g--~F~A~~--lL~Kcp-skY 127 (131)
T PF03100_consen 109 GE-----DG--VFEATE--LLAKCP-SKY 127 (131)
T ss_dssp CC-----TS--EEEEEE--EEETS-----
T ss_pred CC-----CC--EEEEEE--EEeCCC-CCC
Confidence 32 12 345554 566886 456
No 132
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.42 E-value=0.38 Score=53.37 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
++...+-.+|++...+|+.++||+-+.||.|...
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rk 215 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRK 215 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhH
Confidence 5677888999999999999999999999988765
No 133
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=89.27 E-value=0.62 Score=36.21 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=34.7
Q ss_pred HHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhh
Q 006717 304 LKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNEL 341 (634)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (634)
+.+.|++++..|-.||..+++++.|.++|+.|...++.
T Consensus 3 l~~~I~~QGe~VRkLKa~KA~k~~i~~eV~~LL~LKaq 40 (45)
T cd00938 3 LEEAVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQ 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999998864
No 134
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=88.68 E-value=2.2 Score=36.68 Aligned_cols=69 Identities=9% Similarity=0.123 Sum_probs=48.5
Q ss_pred cccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCC-C--CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEee
Q 006717 120 VPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTL-V--SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEK 196 (634)
Q Consensus 120 V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~-~--~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~ 196 (634)
|.++|-|..+| ..-+|+- |+.|.|.+|. +.|++-++. . .+...+..|.+|.|+|.+.... + .|.+++
T Consensus 2 v~i~GiI~~v~-~TK~g~~-~~~leD~~G~--~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~~-----~-~l~~~~ 71 (79)
T cd04490 2 VSIIGMVNDVR-STKNGHR-IVELEDTTGR--ITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKDG-----G-LIFADE 71 (79)
T ss_pred EEEEEEEeEEE-EcCCCCE-EEEEECCCCE--EEEEEeCchhhhhhhhhhccCCCEEEEEEEEecCC-----C-EEEEEE
Confidence 45667776665 2235666 9999999996 999886654 3 3456788999999999995421 2 666665
Q ss_pred eE
Q 006717 197 IL 198 (634)
Q Consensus 197 i~ 198 (634)
|.
T Consensus 72 I~ 73 (79)
T cd04490 72 IF 73 (79)
T ss_pred eE
Confidence 53
No 135
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=87.99 E-value=1.9 Score=48.39 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=61.7
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC-CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEee
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS-PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEK 196 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~ 196 (634)
..|||+|-|.+.+. |++| -.|+.|.|.... |+|++-..... +.-.+..|.-|.|.|.+..=+ ..|.+.|.+++
T Consensus 24 ~~V~v~GEISn~t~-~~sg-H~YFtLKD~~A~--i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~--~rG~YQi~~~~ 97 (440)
T COG1570 24 GQVWVRGEISNFTR-PASG-HLYFTLKDERAQ--IRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYE--PRGDYQIVAES 97 (440)
T ss_pred CeEEEEEEecCCcc-CCCc-cEEEEEccCCce--EEEEEEcCcccccCCCccCCCEEEEEEEEEEEc--CCCceEEEEec
Confidence 57999999999997 6777 889999999876 99998765422 233578999999999997654 25788999998
Q ss_pred eEEEe
Q 006717 197 ILHIG 201 (634)
Q Consensus 197 i~vlg 201 (634)
++--|
T Consensus 98 ~~p~G 102 (440)
T COG1570 98 MEPAG 102 (440)
T ss_pred CCcCC
Confidence 87544
No 136
>PRK12366 replication factor A; Reviewed
Probab=87.90 E-value=3.5 Score=48.62 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=63.8
Q ss_pred eeeeecCCCCC-cccccccceeeeccCCCCC------CCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEE
Q 006717 105 TIIRVLGGSAG-ISNNVPLREKLEALVPKPP------PPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEG 177 (634)
Q Consensus 105 ~~~~v~~~~~~-~~~~V~vrGRi~~~R~~~~------~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G 177 (634)
.+..|.++... ..+.+.|+|||.++-..|. .|++.=++|.|++|- +.+++-.+..+....+..|+++.+.|
T Consensus 278 ~~~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG~--IR~t~w~~~~d~~~~l~~G~vy~is~ 355 (637)
T PRK12366 278 EIVNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTGR--VRVSFWGEKAKILENLKEGDAVKIEN 355 (637)
T ss_pred CceeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCCe--EEEEEeCchhhhhcccCCCCEEEEec
Confidence 34556666655 4568999999998853221 378888999999984 99998665432112357899999996
Q ss_pred EEecCCC--CCCceEEEEEeeeEEEec
Q 006717 178 VLKQPSV--QGKHAVELKVEKILHIGT 202 (634)
Q Consensus 178 ~l~~~~~--~~~q~vEL~~~~i~vlg~ 202 (634)
-.++.-. ...+.+||.+..-..+..
T Consensus 356 ~~vk~y~~~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 356 CKVRTYYDNEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred CEEeeccccCCCcCEEEEcCCceEEEe
Confidence 5555210 124679999876554433
No 137
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=87.49 E-value=2.4 Score=34.09 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=38.9
Q ss_pred cceeeeccCCCCC-CCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecC
Q 006717 122 LREKLEALVPKPP-PPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQP 182 (634)
Q Consensus 122 vrGRi~~~R~~~~-~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~ 182 (634)
+.|+|......+. +++..-+.+.|+++. +.++.=.......+.+..|+.+.|.|++...
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~--i~~~~F~~~~~~~~~~~~G~~~~v~Gkv~~~ 61 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGT--LTLVFFNFQPYLKKQLPPGTRVRVSGKVKRF 61 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCE--EEEEEECCCHHHHhcCCCCCEEEEEEEEeec
Confidence 4566655433122 135667788999885 8888754211123568999999999999864
No 138
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=86.89 E-value=1.7 Score=49.19 Aligned_cols=58 Identities=26% Similarity=0.259 Sum_probs=43.8
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEE
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHI 200 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vl 200 (634)
.++|+.|.|.++. +.+|+-++.. .+...+..|.+|.|+|++... .+.+.|.+++|.-+
T Consensus 302 ~maf~~leD~tG~--ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~----~~~~~liv~~i~~l 360 (449)
T PRK07373 302 PMAFLQLEDLSGQ--SEAVVFPKSYERISELLQVDARLIIWGKVDRR----DDQVQLIVEDAEPI 360 (449)
T ss_pred EEEEEEEEECCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEec----CCeEEEEEeEeecH
Confidence 6999999999997 9998865432 234568899999999999753 24567777776533
No 139
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=85.85 E-value=4.7 Score=41.06 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=35.5
Q ss_pred eEEEEEEcCccceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeE
Q 006717 138 TVFLQVSDGSCVASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKIL 198 (634)
Q Consensus 138 l~Fl~l~Dgs~~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~ 198 (634)
-+|+.|-||+|. |-|-.-..... ..+.+..|--|.|.|-++.=. |...|.+..|.
T Consensus 84 n~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d~~~~~yvkV~G~lk~F~----GK~~I~~~~i~ 141 (258)
T COG5235 84 NSMFVIEDGTGS--IEVRFWPGNSYEEEQCKDLEEQNYVKVNGSLKTFN----GKRSISASHIS 141 (258)
T ss_pred ceEEEEecCCce--EEEEecCCCchHHHhccccccccEEEEecceeeeC----CeeEEehhhee
Confidence 478899999995 66665443322 234456677999999998643 44555554433
No 140
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.55 E-value=1.5 Score=48.87 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhh
Q 006717 235 SVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNK 314 (634)
Q Consensus 235 av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 314 (634)
.-+.+|+.|...+.+-|..+|...|+||++---. .+.--+-|-+..
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElke----------------------------------iL~gKYGEdskL 117 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKE----------------------------------ILTGKYGEDSKL 117 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHH----------------------------------HHhhhcccccce
Confidence 5578999999999999999999999999743210 111112233445
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCce
Q 006717 315 VEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNV 393 (634)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rV 393 (634)
++.|+.-+ | .-....+=|||+=-=|+-|= +..+.|
T Consensus 118 iYdlkDQG-------------------------------G------------El~SLRYDLTVPfARylAmNki~sikR- 153 (518)
T KOG1936|consen 118 IYDLKDQG-------------------------------G------------ELCSLRYDLTVPFARYLAMNKITSIKR- 153 (518)
T ss_pred eEehhhcC-------------------------------C------------cEEEeecccccHHHHHHHHccccccee-
Confidence 55555322 1 11222335677654444442 334444
Q ss_pred EEEccccccCcC-CCCCccccccccchhhcC
Q 006717 394 YSFGPRFRAEKK-ESSKHAAEMLMVETEIAF 423 (634)
Q Consensus 394 YeIgp~FRaE~s-~T~rHlpEFtmLE~E~af 423 (634)
|+|+++||-+.. -|.-+.-||+|+|+-.|.
T Consensus 154 y~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 154 YHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred eeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 899999998754 245578899999999886
No 141
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=85.55 E-value=1.7 Score=54.00 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=46.3
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEec
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~ 202 (634)
+| ++|+.|.|.++. +.|++-++.. .+...+..|..|.|+|++... .+.+.+.+++|.-+..
T Consensus 972 kG-maf~~leD~~g~--~e~~ifp~~~~~~~~~l~~~~~~~v~g~v~~~----~~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 972 SG-VTFLTLEDETGM--VNVVVWPGLWERQRREALGARLLLVRGRVQNA----EGVRHLVADRLEDLSP 1033 (1046)
T ss_pred Cc-eEEEEEecCCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEec----CCeEEEEEeeeechHH
Confidence 45 999999999997 9999866532 233568899999999999754 3457788888765533
No 142
>PRK14699 replication factor A; Provisional
Probab=85.45 E-value=7.3 Score=44.55 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=57.3
Q ss_pred cccccceeeeccCCCC-------CCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceE
Q 006717 118 NNVPLREKLEALVPKP-------PPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAV 190 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~-------~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~v 190 (634)
..|.|.|||..+-..| ..|++.=+.|-|.||. +.+++-.+..++...|..|++|.+.+-.++.. .-.+.+
T Consensus 177 ~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG~--ir~tlW~~~a~~~~~l~~Gd~v~I~~a~vr~~-~~~~~~ 253 (484)
T PRK14699 177 GDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETGT--LRVTLWDDKTDFLNQIEYGDTVELINAYAREN-AFTQKV 253 (484)
T ss_pred CceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCce--EEEEEECcccccccccCCCCEEEEecceEeec-ccCCce
Confidence 3489999998864411 1234544678898885 88887665434445689999999886644332 113789
Q ss_pred EEEEeeeEEEecCC
Q 006717 191 ELKVEKILHIGTVD 204 (634)
Q Consensus 191 EL~~~~i~vlg~~~ 204 (634)
||.+.+...+..++
T Consensus 254 el~~~~~s~i~~~~ 267 (484)
T PRK14699 254 ELQVGNRSIIRKSE 267 (484)
T ss_pred EEEecCceEeeccc
Confidence 99998888877764
No 143
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=84.17 E-value=3.9 Score=37.18 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=46.7
Q ss_pred CcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEE
Q 006717 115 GISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKV 194 (634)
Q Consensus 115 ~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~ 194 (634)
..+..|.+.|+|...-. .-.. ..+|+|+- |+|-++.+.-. ...++.++-|.|.|++-+.- ...||.|
T Consensus 32 ~Dd~~V~L~G~Iv~~l~---~d~Y---~F~D~TG~--I~VeId~~~w~-g~~vt~~~~Vri~GeVDk~~----~~~~IdV 98 (103)
T PF04076_consen 32 KDDTPVTLEGNIVKQLG---DDKY---LFRDATGE--IEVEIDDDVWR-GQTVTPDDKVRISGEVDKDW----NKTEIDV 98 (103)
T ss_dssp -SSEEEEEEEEEEEEEE---TTEE---EEEETTEE--EEEE--GGGST-T----TTSEEEEEEEEEEET----TEEEEEE
T ss_pred cCCCeEEEEEEEEEEec---CCEE---EEECCCCc--EEEEEChhhcC-CcccCCCCEEEEEEEEeCCC----CceEEEE
Confidence 34567899999988754 2243 35999994 88887765321 34578999999999998543 4688888
Q ss_pred eeeE
Q 006717 195 EKIL 198 (634)
Q Consensus 195 ~~i~ 198 (634)
..|+
T Consensus 99 ~~I~ 102 (103)
T PF04076_consen 99 DRIE 102 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 144
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.95 E-value=0.56 Score=51.40 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=37.2
Q ss_pred ceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCC
Q 006717 371 RQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS 424 (634)
Q Consensus 371 ~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~ 424 (634)
...-|+.-.-.|---+ -.|.+.--..|-+||-..++ +.|.|=|.++|--.-|.
T Consensus 131 ~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdeid-sthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 131 HTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEID-STHYPVFHQMEGVRLWS 184 (436)
T ss_pred ceeeehhcchhhHHHHHHhcccccceeeeeeeecccc-ccccceeccccceeEEe
Confidence 4444444443442223 34677778889999999996 89999999999876664
No 145
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=83.42 E-value=7.3 Score=38.16 Aligned_cols=98 Identities=19% Similarity=0.302 Sum_probs=62.9
Q ss_pred hhcccccceeeeeecCCC------CCcccccccceeee--ccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCC
Q 006717 96 LQSRIPFFRTIIRVLGGS------AGISNNVPLREKLE--ALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIR 167 (634)
Q Consensus 96 ~qs~~~~fr~~~~v~~~~------~~~~~~V~vrGRi~--~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l 167 (634)
+++.+..|....++.... ...+..++|-|-|. ++...+....+.| .|.|+.. .+.|....-.. .+.
T Consensus 30 l~~n~~yF~tPsev~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilP---DlF 103 (159)
T PRK13150 30 LRANIDLFYTPGEILYGKRETQQLPAVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEG--SVTVSYEGILP---DLF 103 (159)
T ss_pred HhhCccEEeCHHHHhccccccccCcCCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCc--EEEEEEeccCC---ccc
Confidence 345566677767765433 23457888888887 4443111225676 7899866 48888765543 357
Q ss_pred CCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 168 PIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 168 ~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
+-|.-|.++|.+... + -++++ ++|.+|| ++|-
T Consensus 104 rEG~gVVveG~~~~~-----g--~F~A~--evLAKhd-ekYm 135 (159)
T PRK13150 104 REGQGVVVQGTLEKG-----N--HVLAH--EVLAKHD-ENYT 135 (159)
T ss_pred cCCCeEEEEEEECCC-----C--EEEEe--EEEeCCC-CCCC
Confidence 889999999999642 2 14444 4778997 5773
No 146
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=82.96 E-value=7.6 Score=37.58 Aligned_cols=97 Identities=24% Similarity=0.312 Sum_probs=63.4
Q ss_pred hhcccccceeeeeecCCCCCcccccccceeeec--cCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEE
Q 006717 96 LQSRIPFFRTIIRVLGGSAGISNNVPLREKLEA--LVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCL 173 (634)
Q Consensus 96 ~qs~~~~fr~~~~v~~~~~~~~~~V~vrGRi~~--~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V 173 (634)
+++.+..|....++.......++.|+|.|-|.. +.. ...+.+.| .|.|+.. .+.|+...... +..+-|..|
T Consensus 30 ~~~~~~yf~tpse~~~~~~~~g~~vrvgG~V~~gSi~~-~~~~~~~F-~ltD~~~--~i~V~Y~G~lP---d~F~eg~~V 102 (148)
T PRK13254 30 LRQNIVFFYTPSEVAEGEAPAGRRFRLGGLVEKGSVQR-GDGLTVRF-VVTDGNA--TVPVVYTGILP---DLFREGQGV 102 (148)
T ss_pred HHhCCceeeCHHHHhcCCccCCCeEEEeEEEecCcEEe-CCCCEEEE-EEEeCCe--EEEEEECCCCC---ccccCCCEE
Confidence 345555666666666655555688999998863 221 02457787 6788864 48888775543 346789999
Q ss_pred EEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 174 MVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 174 ~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
.|+|.+... + .+++++ +|.+|+ ++|-
T Consensus 103 Vv~G~~~~~-----g--~F~A~~--vLaKc~-skY~ 128 (148)
T PRK13254 103 VAEGRLQDG-----G--VFVADE--VLAKHD-ENYM 128 (148)
T ss_pred EEEEEECCC-----C--eEEEEE--EEecCC-CCCC
Confidence 999998531 2 244554 667897 4673
No 147
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=82.60 E-value=4.5 Score=46.84 Aligned_cols=46 Identities=9% Similarity=0.211 Sum_probs=35.5
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFK 438 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik 438 (634)
|+||||+||+.+.. +..|..|++++-+-++.. |+.++...+|.++.
T Consensus 440 ~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 440 KIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred eEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 89999999998764 245778999998777653 67888777777764
No 148
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=82.14 E-value=2.8 Score=52.29 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=44.6
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEe
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIG 201 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg 201 (634)
.++|+.|.|.++. +.||+-++.. .+...+..|..|.|+|++... .+...|.+++|.-+.
T Consensus 965 ~maf~~leD~tg~--~e~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~----~~~~~~~~~~i~~l~ 1024 (1107)
T PRK06920 965 KMAFITFCDQNDE--MEAVVFPETYIHFSDKLQEGAIVLVDGTIELR----NHKLQWIVNGLYPLE 1024 (1107)
T ss_pred eEEEEEEeeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEec----CCcEEEEEeecccHH
Confidence 6999999999996 9998865432 234568899999999999753 245677777775443
No 149
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=81.58 E-value=3.2 Score=52.05 Aligned_cols=58 Identities=21% Similarity=0.139 Sum_probs=43.9
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEE
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHI 200 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vl 200 (634)
.++|+.|.|.++. +.||+-++.. .+...+..|..|.|+|++.... +.+.|.++++.-+
T Consensus 1022 ~maf~~leD~tg~--~e~vvFp~~y~~~~~~l~~~~~~~v~g~v~~~~----~~~~~~~~~i~~l 1080 (1170)
T PRK07374 1022 RMAILQLEDLTGS--CEAVVFPKSYERLSDHLMTDTRLLVWAKVDRRD----DRVQLIIDDCREI 1080 (1170)
T ss_pred EEEEEEEEECCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEEEEEeeeecH
Confidence 6999999999997 9998865432 2345688999999999997532 4567777777544
No 150
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=81.21 E-value=8.1 Score=37.72 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=65.0
Q ss_pred hhcccccceeeeeecCCCCCcccccccceeee--ccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEE
Q 006717 96 LQSRIPFFRTIIRVLGGSAGISNNVPLREKLE--ALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCL 173 (634)
Q Consensus 96 ~qs~~~~fr~~~~v~~~~~~~~~~V~vrGRi~--~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V 173 (634)
+++.+..|....++.......+..++|-|-|. ++...+....+.| .|.|+.. .+.|.+..-.. ++.+-|.-|
T Consensus 30 l~~n~~yF~tpsEv~~~~~~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilP---DlFrEGqgV 103 (155)
T PRK13159 30 LQRNMSYLFTPSQVRAGAAAGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNA--ATQVEYTGILP---DLFRDNQSV 103 (155)
T ss_pred hhhCceEEECHHHHhcCCcccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCc--EEEEEEccCCC---ccccCCCeE
Confidence 45666777777777776665668888888877 4433111225677 6789866 48887765443 357889999
Q ss_pred EEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 174 MVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 174 ~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
.++|.+. . + .++++ ++|.+|| ++|-
T Consensus 104 VaeG~~~--~----g--~F~A~--~vLAKHd-e~Ym 128 (155)
T PRK13159 104 IANGRMQ--G----G--RFVAN--EVLAKHD-ETYM 128 (155)
T ss_pred EEEEEEc--C----C--EEEEe--EEEecCC-CcCC
Confidence 9999985 2 2 34454 4678998 5673
No 151
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=80.94 E-value=9.5 Score=37.45 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=63.4
Q ss_pred hhcccccceeeeeecCCCC------Ccccccccceeee--ccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCC
Q 006717 96 LQSRIPFFRTIIRVLGGSA------GISNNVPLREKLE--ALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIR 167 (634)
Q Consensus 96 ~qs~~~~fr~~~~v~~~~~------~~~~~V~vrGRi~--~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l 167 (634)
+++.+..|....++..... ..+..++|-|-|. ++...+....+.| .|.|+.. .+.|....-.. ++.
T Consensus 30 l~~n~~yF~tPsev~~~~~~~~~~~~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~--~v~V~Y~GilP---DlF 103 (160)
T PRK13165 30 LRSNIDLFYTPGEILYGKRETQQKPEVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGG--SVTVTYEGILP---DLF 103 (160)
T ss_pred HhhCccEEeCHHHHhccccccccccCCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCe--EEEEEEcccCC---ccc
Confidence 4556667777777665532 2457888888887 4443111114677 7789965 48888765443 357
Q ss_pred CCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 168 PIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 168 ~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
+-|.-|.|+|.+... + .++++ ++|.+|| ++|-
T Consensus 104 rEG~gVVveG~~~~~-----g--~F~A~--~vLAKhd-ekYm 135 (160)
T PRK13165 104 REGQGIVAQGVLEEG-----N--HIEAK--EVLAKHD-ENYT 135 (160)
T ss_pred cCCCeEEEEEEECCC-----C--eEEEE--EEEecCC-CCCC
Confidence 889999999999632 2 23444 4778997 5773
No 152
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=80.47 E-value=7.9 Score=43.30 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=60.7
Q ss_pred ccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEe
Q 006717 117 SNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~ 195 (634)
-..|||.|-|.+.+. ..++-+|++|.|... .|-||+-.... ...-.+..|+-|.|.|.+..-+ ..|.+.|.|+
T Consensus 23 ~~~v~v~gEis~~~~--~~sGH~Yf~Lkd~~a--~i~~~~~~~~~~~~~~~~~~G~~v~v~g~~~~y~--~~g~~ql~v~ 96 (438)
T PRK00286 23 LGQVWVRGEISNFTR--HSSGHWYFTLKDEIA--QIRCVMFKGSARRLKFKPEEGMKVLVRGKVSLYE--PRGDYQLIVE 96 (438)
T ss_pred CCcEEEEEEeCCCee--CCCCeEEEEEEcCCc--EEEEEEEcChhhcCCCCCCCCCEEEEEEEEEEEC--CCCCEEEEEE
Confidence 368999999999976 234568889999966 49999876532 2233578999999999998543 2577999999
Q ss_pred eeEEEec
Q 006717 196 KILHIGT 202 (634)
Q Consensus 196 ~i~vlg~ 202 (634)
+|...|.
T Consensus 97 ~i~~~g~ 103 (438)
T PRK00286 97 EIEPAGI 103 (438)
T ss_pred EeeeCCc
Confidence 9987653
No 153
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=80.47 E-value=3.7 Score=45.56 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC
Q 006717 235 SVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS 269 (634)
Q Consensus 235 av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~ 269 (634)
.-.+....|...+++.|..+||..|+||+|...++
T Consensus 15 ~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~ 49 (390)
T COG3705 15 LEARRKEEIRDQLLALFRAWGYERVETPTLEPADP 49 (390)
T ss_pred hHHhhHHHHHHHHHHHHHHhCCccccccccchhhh
Confidence 44567778888899999999999999999998764
No 154
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=80.13 E-value=14 Score=31.23 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=40.0
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEE-EEEecCCCCCCceEEEEEeee
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVE-GVLKQPSVQGKHAVELKVEKI 197 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~-G~l~~~~~~~~q~vEL~~~~i 197 (634)
.|++.=+.|.|+|+. +.+++-.... ...+..|++|.++ |.+..- .+.++|.+.+-
T Consensus 21 ~~~~~~~~l~D~TG~--i~~~~W~~~~--~~~~~~G~vv~i~~~~v~~~----~g~~ql~i~~~ 76 (82)
T cd04491 21 EGKVQSGLVGDETGT--IRFTLWDEKA--ADDLEPGDVVRIENAYVREF----NGRLELSVGKN 76 (82)
T ss_pred eeEEEEEEEECCCCE--EEEEEECchh--cccCCCCCEEEEEeEEEEec----CCcEEEEeCCc
Confidence 356777888999984 8888765432 3568999999999 777553 36788887653
No 155
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=79.95 E-value=8.5 Score=36.35 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=50.4
Q ss_pred cccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEe
Q 006717 116 ISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 116 ~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~ 195 (634)
.+..|.++|.|...-. .-.. ..+|++|. |+|-++.+.-+ ...++.++-|.|.|+|-+.- +..||.|.
T Consensus 56 Ddt~V~L~G~Iv~~l~---~d~Y---~F~D~TG~--I~VeId~~~w~-G~~v~p~d~V~I~GeVDk~~----~~~~IdV~ 122 (126)
T TIGR00156 56 DGASVTLRGNIISHIG---DDRY---VFRDKSGE--INVVIPAAVWN-GREVQPKDMVNISGSLDKKS----APAEVDVT 122 (126)
T ss_pred CCCEEEEEEEEEEEeC---CceE---EEECCCCC--EEEEECHHHcC-CCcCCCCCEEEEEEEECCCC----CCeEEEEE
Confidence 4567899999998854 2123 45999995 88888765321 24578999999999997542 45788887
Q ss_pred eeE
Q 006717 196 KIL 198 (634)
Q Consensus 196 ~i~ 198 (634)
+|+
T Consensus 123 ~I~ 125 (126)
T TIGR00156 123 HIQ 125 (126)
T ss_pred EEE
Confidence 775
No 156
>PRK10053 hypothetical protein; Provisional
Probab=79.15 E-value=8.9 Score=36.38 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=51.4
Q ss_pred CcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEE
Q 006717 115 GISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKV 194 (634)
Q Consensus 115 ~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~ 194 (634)
..+..|.++|.|...-. .-.. ..+|+++- |+|-++.+.- ....++..+-|.+.|++-+.- ...||.|
T Consensus 59 ~Dd~~V~L~G~Iv~~lg---~d~Y---~F~D~tG~--I~VeID~~~w-~G~~v~p~~kV~I~GevDk~~----~~~~IdV 125 (130)
T PRK10053 59 HDGATVSLRGNLIDHKG---DDRY---VFRDKSGE--INVIIPAAVF-DGREVQPDQMININGSLDKKS----APPVVRV 125 (130)
T ss_pred cCCCeEEEEEEEEEEeC---CceE---EEECCCCc--EEEEeCHHHc-CCCcCCCCCEEEEEEEECCCC----CCeEEEE
Confidence 34568899999988743 1133 45999995 9988876542 134689999999999997642 4578888
Q ss_pred eeeE
Q 006717 195 EKIL 198 (634)
Q Consensus 195 ~~i~ 198 (634)
++|+
T Consensus 126 ~~i~ 129 (130)
T PRK10053 126 THLQ 129 (130)
T ss_pred EEEe
Confidence 8775
No 157
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=78.15 E-value=9.2 Score=42.99 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=58.7
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEee
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEK 196 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~ 196 (634)
..|||.|-|.+.+. +.+ +-+|+.|.|.... |.||+-.... ...-.+..|+-|.|.|.+..-+ ..|.+.|.|++
T Consensus 18 ~~v~V~GEisn~~~-~~s-GH~YFtLkD~~a~--i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~--~~G~~ql~v~~ 91 (432)
T TIGR00237 18 LQVWIQGEISNFTQ-PVS-GHWYFTLKDENAQ--VRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYE--PRGDYQIICFE 91 (432)
T ss_pred CcEEEEEEecCCee-CCC-ceEEEEEEcCCcE--EEEEEEcChhhCCCCCCCCCCEEEEEEEEEEEC--CCCcEEEEEEE
Confidence 37999999999975 334 4678899998764 9998866432 2223478999999999997543 25779999999
Q ss_pred eEEEe
Q 006717 197 ILHIG 201 (634)
Q Consensus 197 i~vlg 201 (634)
+...|
T Consensus 92 i~~~G 96 (432)
T TIGR00237 92 MQPAG 96 (432)
T ss_pred eccCC
Confidence 88655
No 158
>PRK07080 hypothetical protein; Validated
Probab=77.54 E-value=1.9 Score=46.37 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=39.3
Q ss_pred ceEEE-ccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSF-GPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 392 rVYeI-gp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
++|.+ |.|||+|+++..+.+-||.|.|+-.- .+-+++.+.-+..+.....
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~i-Gt~e~v~~~r~~w~e~~~~ 203 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRI-GTPEQIVAFRQSWIERGTA 203 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEe-cCHHHHHHHHHHHHHHHHH
Confidence 66665 88999999999999999999998554 4777877777766655543
No 159
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=77.38 E-value=3.1 Score=52.19 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=58.3
Q ss_pred ccccccceeeeccCCCCCCC--ceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEE
Q 006717 117 SNNVPLREKLEALVPKPPPP--STVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELK 193 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G--~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~ 193 (634)
...|+|.|-|..+|..+-+. .++|+.|.|.++. +.+|+-++.. .+...+..|..|.|+|++.... .+.+.|.
T Consensus 991 ~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~~~~~~~~~l~~~~~~~v~g~v~~~~---~~~~~~~ 1065 (1151)
T PRK06826 991 GDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPKVYEKYRSLLNEDNIVLIKGRVSLRE---DEEPKLI 1065 (1151)
T ss_pred CcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC---CCceEEE
Confidence 35789999998887633333 4999999999996 9999865432 2345688999999999997432 2457788
Q ss_pred EeeeEEE
Q 006717 194 VEKILHI 200 (634)
Q Consensus 194 ~~~i~vl 200 (634)
++++.-+
T Consensus 1066 ~~~~~~l 1072 (1151)
T PRK06826 1066 CEEIEPL 1072 (1151)
T ss_pred EeeeecH
Confidence 8777544
No 160
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=77.00 E-value=4.6 Score=50.66 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=45.7
Q ss_pred ceEEEEEEcCccceeEEEEEeCCC-CCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEec
Q 006717 137 STVFLQVSDGSCVASLQVVVESTL-VSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~-~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~ 202 (634)
.++|+.|.|.++. +.+++-++. ..+...+..|+.|.|+|++... .+...|.++++.-+..
T Consensus 999 ~mafltLeD~TG~--iEvviFp~~ye~~~~~L~~g~iV~V~GkVe~~----~~~~qlii~~I~~L~~ 1059 (1135)
T PRK05673 999 KMAIVTLEDLSGR--IEVMLFSEALEKYRDLLEEDRIVVVKGQVSFD----DGGLRLTAREVMDLEE 1059 (1135)
T ss_pred eEEEEEEEeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEec----CCeEEEEEeecccHHH
Confidence 6999999999996 999886643 2234568899999999999753 2457788887765543
No 161
>PRK15491 replication factor A; Provisional
Probab=76.97 E-value=9.4 Score=42.23 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=64.6
Q ss_pred eeeecCCCCCcccccccceeeeccCCCC-------CCCceEEEEEEcCccceeEEEEEeCCCCC-CC-CCCCCCcEEEEE
Q 006717 106 IIRVLGGSAGISNNVPLREKLEALVPKP-------PPPSTVFLQVSDGSCVASLQVVVESTLVS-PS-KIRPIGTCLMVE 176 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~R~~~-------~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-~~-~~l~~Gs~V~V~ 176 (634)
..++.++... ...|.|.|||..+-..| ..|++.=+.|-|.||. +++++-.+..+ +. ..|..|++|.|.
T Consensus 57 ~~kI~dL~~~-~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~--ir~tlW~~~a~~~~~~~le~G~v~~I~ 133 (374)
T PRK15491 57 TTKIADINES-SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGS--IRLTLWDDLADLIKTGDIEVGKSLNIS 133 (374)
T ss_pred cccHHHCCCC-CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCe--EEEEEECchhhhhccCCcCCCCEEEEe
Confidence 3445555322 26789999999872211 2467777899999985 99998765432 22 458899999999
Q ss_pred EEEecCCCCCCceEEEEEeeeEEEecCC
Q 006717 177 GVLKQPSVQGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 177 G~l~~~~~~~~q~vEL~~~~i~vlg~~~ 204 (634)
|..+..- +.+||.+.+...+.+|+
T Consensus 134 ~~~~~~y----~g~Ei~i~~~~~i~~~~ 157 (374)
T PRK15491 134 GYAKEGY----SGIEVNIGRYGGISESD 157 (374)
T ss_pred eeeccCc----ccEEEEeCCCceeeecc
Confidence 9855432 33899999888888886
No 162
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=75.34 E-value=8.6 Score=34.50 Aligned_cols=77 Identities=8% Similarity=0.101 Sum_probs=51.2
Q ss_pred cccccceeeec---cCCCCC---CCceEEEEEEcC-ccceeEEEEEeCCC-CCCCCCCCCCcEEEEEE-EEecCCC---C
Q 006717 118 NNVPLREKLEA---LVPKPP---PPSTVFLQVSDG-SCVASLQVVVESTL-VSPSKIRPIGTCLMVEG-VLKQPSV---Q 185 (634)
Q Consensus 118 ~~V~vrGRi~~---~R~~~~---~G~l~Fl~l~Dg-s~~~~lQvV~~~~~-~~~~~~l~~Gs~V~V~G-~l~~~~~---~ 185 (634)
..++|+|||.. .|.-+. .|++.-++|.|. ++ .|++.+-.+. ..+...|..|+++.+.| .|+.... .
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~--~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~~a~~~y~~ 87 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGG--EIRATFFNDAVDKFYDLLEVGKVYYISKGSVKVANKKFNT 87 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCCC--EEEEEEehHHHHHhhcccccccEEEEeccEEeeccccCCC
Confidence 35789999984 332111 378889999999 55 4999887643 33567899999999985 4444321 1
Q ss_pred CCceEEEEEee
Q 006717 186 GKHAVELKVEK 196 (634)
Q Consensus 186 ~~q~vEL~~~~ 196 (634)
.+..+||...+
T Consensus 88 ~~~~yeI~f~~ 98 (104)
T cd04474 88 LKNDYEITFNR 98 (104)
T ss_pred CCCcEEEEECC
Confidence 24677777653
No 163
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=74.04 E-value=28 Score=32.65 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=49.2
Q ss_pred cccccceeeeccCC------CCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEE-EEecCCCCCCceE
Q 006717 118 NNVPLREKLEALVP------KPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEG-VLKQPSVQGKHAV 190 (634)
Q Consensus 118 ~~V~vrGRi~~~R~------~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G-~l~~~~~~~~q~v 190 (634)
..|.+.|+|..+-. +...+.+.-+.|.|.|+. |.+.+-.+. +..+..|++|.|.| .+.. - .+.+
T Consensus 15 ~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~--I~~tlW~~~---a~~l~~GdvV~I~na~v~~-f---~G~l 85 (129)
T PRK06461 15 ERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGR--VKLTLWGEQ---AGSLKEGEVVEIENAWTTL-Y---RGKV 85 (129)
T ss_pred CceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCE--EEEEEeCCc---cccCCCCCEEEEECcEEee-e---CCEE
Confidence 45667777774321 001124667889999995 888775542 24578999999994 5443 2 4678
Q ss_pred EEEEee---eEEEec
Q 006717 191 ELKVEK---ILHIGT 202 (634)
Q Consensus 191 EL~~~~---i~vlg~ 202 (634)
+|.+.+ |..+++
T Consensus 86 qL~i~~~~~i~~~~~ 100 (129)
T PRK06461 86 QLNVGKYGSISESDD 100 (129)
T ss_pred EEEECCCEEEEECCc
Confidence 999985 555543
No 164
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=73.30 E-value=11 Score=45.76 Aligned_cols=47 Identities=15% Similarity=0.312 Sum_probs=33.7
Q ss_pred CceEEEccccccCcCC----CCCccccccccchhhcCCCH--HHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKE----SSKHAAEMLMVETEIAFSQL--EDAMKCADDYFK 438 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~----T~rHlpEFtmLE~E~af~d~--~dlm~l~E~Lik 438 (634)
.|+-..-||-|+.+.+ |+||+.=|-||== .+|.|| ++.+.++-+|+-
T Consensus 63 ~r~~~sQkcIR~NDieNVG~T~RHhTfFEMLGN-fSFGdYFKeeAI~~AwEflT 115 (879)
T COG0013 63 NRAVTSQKCIRTNDIDNVGYTARHHTFFEMLGN-FSFGDYFKEEAIEFAWEFLT 115 (879)
T ss_pred CCeeccccccccCchhhcCccccchhHHHhhhc-CchhHHHHHHHHHHHHHHHH
Confidence 4777788999996543 8999999999843 567775 555665555554
No 165
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=71.31 E-value=2.8 Score=37.38 Aligned_cols=15 Identities=40% Similarity=0.889 Sum_probs=13.7
Q ss_pred EEEEEEEEeecccCC
Q 006717 47 RVVIGGWVKTSKEVK 61 (634)
Q Consensus 47 ~~~~~gwv~~~r~~~ 61 (634)
+|+|.|||+++|.+|
T Consensus 1 ~V~v~Gwv~~~R~~g 15 (103)
T cd04319 1 KVTLAGWVYRKREVG 15 (103)
T ss_pred CEEEEEEEEeEEcCC
Confidence 489999999999988
No 166
>PRK12366 replication factor A; Reviewed
Probab=71.05 E-value=23 Score=41.98 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=60.5
Q ss_pred eeeecCCCCCcccccccceeeeccCC-------CCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEE
Q 006717 106 IIRVLGGSAGISNNVPLREKLEALVP-------KPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGV 178 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~R~-------~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~ 178 (634)
+..+.++... ...|.|.|||..+-. +-..|++.=+.|-|.||. +.+++-.+...+...|..|+++.+.|-
T Consensus 63 ~~~I~dl~p~-~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~--Ir~t~W~~~~~~~~~le~G~v~~i~~~ 139 (637)
T PRK12366 63 DFKISDIEEG-QINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGT--IRLTLWNDNAKLLKGLKEGDVIKIENA 139 (637)
T ss_pred eeEHHHCcCC-CcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCE--EEEEEEchhhhhhccCCCCCEEEEecc
Confidence 3445555422 256899999987621 011467888999999995 999886654333457899999999987
Q ss_pred EecCCCCCCceEEEEEeeeEEEe
Q 006717 179 LKQPSVQGKHAVELKVEKILHIG 201 (634)
Q Consensus 179 l~~~~~~~~q~vEL~~~~i~vlg 201 (634)
.++.- .+.+||.+..=.-+.
T Consensus 140 ~v~~~---~~~~el~~~~~t~I~ 159 (637)
T PRK12366 140 RSRKW---NNDVELNSGSETRID 159 (637)
T ss_pred Eeccc---CCceEEEcCCcceEE
Confidence 66543 467888875433333
No 167
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=70.99 E-value=2.8 Score=37.68 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=13.7
Q ss_pred EEEEEEEEeecccCC
Q 006717 47 RVVIGGWVKTSKEVK 61 (634)
Q Consensus 47 ~~~~~gwv~~~r~~~ 61 (634)
+|+|.|||+++|.++
T Consensus 1 ~v~v~GwV~~~R~~g 15 (108)
T cd04322 1 EVSVAGRIMSKRGSG 15 (108)
T ss_pred CEEEEEEEEEEecCC
Confidence 389999999999987
No 168
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=70.58 E-value=2.7 Score=36.00 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=13.7
Q ss_pred EEEEEEEEeecccCC
Q 006717 47 RVVIGGWVKTSKEVK 61 (634)
Q Consensus 47 ~~~~~gwv~~~r~~~ 61 (634)
.|+|.|||+++|.++
T Consensus 1 ~V~i~Gwv~~~R~~g 15 (85)
T cd04100 1 EVTLAGWVHSRRDHG 15 (85)
T ss_pred CEEEEEEEehhccCC
Confidence 389999999999998
No 169
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=70.26 E-value=2.6 Score=46.32 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=28.6
Q ss_pred HHHhcCC-CCcceeeccHHHHHHHhcCCCCcCccccCCC
Q 006717 590 DLRRHGT-VKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627 (634)
Q Consensus 590 da~kyG~-PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr 627 (634)
.+-+||. .|---.|||+|||.|.|.|.++||.. .+|.
T Consensus 315 ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 315 ALAEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred HHHHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 3445555 36778999999999999999999975 3443
No 170
>PRK14699 replication factor A; Provisional
Probab=69.85 E-value=20 Score=41.03 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=60.6
Q ss_pred ccccccceeeeccCC-------CCCCCceEEEEEEcCccceeEEEEEeCCCCCCCC--CCCCCcEEEEEEEEecCCCCCC
Q 006717 117 SNNVPLREKLEALVP-------KPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSK--IRPIGTCLMVEGVLKQPSVQGK 187 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~-------~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~--~l~~Gs~V~V~G~l~~~~~~~~ 187 (634)
...|.|.|||..+-. ....|++.=+.|-|.||. +-+++-.+...... .|..||+|.|.|.++. +.
T Consensus 67 ~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a~~~~~g~l~~GDvv~I~~~~r~---~~- 140 (484)
T PRK14699 67 SGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMADLIKAGKIKAGQTLQISGYAKQ---GY- 140 (484)
T ss_pred CceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCccchhhhcCCCCCCEEEEcceecc---CC-
Confidence 367899999998842 123457777789999985 88888765433222 4899999999996433 22
Q ss_pred ceEEEEEeeeEEEecCCCCCCCCC
Q 006717 188 HAVELKVEKILHIGTVDHDKYPLS 211 (634)
Q Consensus 188 q~vEL~~~~i~vlg~~~~~~yPl~ 211 (634)
+..||.+.+...+...+ ...+.+
T Consensus 141 ~g~el~~~~~~~i~~~~-~~i~v~ 163 (484)
T PRK14699 141 SGVEVNIGNNGVLTESE-EEIDVA 163 (484)
T ss_pred CCceEEeCCCceeeccC-cccccC
Confidence 34799988777776654 345543
No 171
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=69.58 E-value=13 Score=40.16 Aligned_cols=63 Identities=17% Similarity=0.060 Sum_probs=47.6
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~ 204 (634)
+....+.|.|.||. |...+-.........+..|++|.|.|.+..-. +.+.|.+..+..+.+.+
T Consensus 32 ~~yl~l~l~D~tG~--I~ak~W~~~~~~~~~~~~g~vv~v~G~v~~y~----g~~Ql~i~~i~~~~~~e 94 (314)
T PRK13480 32 KPFLTLILQDKSGD--IEAKLWDVSPEDEATYVPETIVHVKGDIINYR----GRKQLKVNQIRLATEED 94 (314)
T ss_pred CeEEEEEEEcCCcE--EEEEeCCCChhhHhhcCCCCEEEEEEEEEEEC----CcceEEEEEeEECCCCC
Confidence 34777888999996 89888654433345688999999999998643 56668888888876643
No 172
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=69.02 E-value=8 Score=48.03 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=43.1
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeE
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKIL 198 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~ 198 (634)
.++|+.|.|.++. +.+++-++.. .+...+..|..|.|+|++... .+...|.++++.
T Consensus 907 ~maf~~leD~~g~--ie~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~----~~~~~l~~~~i~ 963 (1034)
T PRK07279 907 QMAFLSVTDTKKK--LDVTLFPETYRQYKDELKEGKFYYLKGKIQER----DGRLQMVLQQIQ 963 (1034)
T ss_pred eEEEEEEeeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEec----CCeeEEEEeeee
Confidence 6999999999997 9999866532 234568899999999999763 245667777664
No 173
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=68.93 E-value=3.4 Score=35.37 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=13.6
Q ss_pred EEEEEEEEeecccCC
Q 006717 47 RVVIGGWVKTSKEVK 61 (634)
Q Consensus 47 ~~~~~gwv~~~r~~~ 61 (634)
+|+|.|||+++|..|
T Consensus 1 ~V~v~Gwv~~~R~~g 15 (84)
T cd04323 1 RVKVFGWVHRLRSQK 15 (84)
T ss_pred CEEEEEEEEEEecCC
Confidence 489999999999987
No 174
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=68.67 E-value=3.6 Score=47.12 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=26.0
Q ss_pred ceEEEccccccCcCC--CCCccccccccchhhcCCCHH
Q 006717 392 NVYSFGPRFRAEKKE--SSKHAAEMLMVETEIAFSQLE 427 (634)
Q Consensus 392 rVYeIgp~FRaE~s~--T~rHlpEFtmLE~E~af~d~~ 427 (634)
-+-|||++||||-+- .--..-||+|+|+|. |.+-+
T Consensus 167 giaQIGk~FRNEIsPr~~l~R~REF~q~EiE~-Fv~P~ 203 (539)
T PRK14894 167 GIAQVGKAFRNEINPRNFLFRVREFEQMEIEY-FVMPG 203 (539)
T ss_pred eEEeeeccccCccCCCCceeecccchhheEEE-EeCCC
Confidence 478999999999552 112678999999986 55543
No 175
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=67.79 E-value=6.4 Score=36.74 Aligned_cols=45 Identities=9% Similarity=0.106 Sum_probs=23.4
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCCCC--CCCCCCcEEEEEEEEec
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVSPS--KIRPIGTCLMVEGVLKQ 181 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~--~~l~~Gs~V~V~G~l~~ 181 (634)
+-.++...+..+...++|.+..+..... ..|+.|+-|.|.|++.-
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~g 131 (144)
T PF12869_consen 85 DNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKKGQKVTIKGICTG 131 (144)
T ss_dssp T-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--TTSEEEEEEE---
T ss_pred CcEEEEccCCCCceeEEEEEccchhhhhhHhcCCCCCEEEEEEEEEe
Confidence 3346666666666789999876542221 23899999999999854
No 176
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=67.73 E-value=3.9 Score=34.77 Aligned_cols=14 Identities=36% Similarity=0.997 Sum_probs=13.2
Q ss_pred EEEEEEEeecccCC
Q 006717 48 VVIGGWVKTSKEVK 61 (634)
Q Consensus 48 ~~~~gwv~~~r~~~ 61 (634)
|+|.|||+++|.++
T Consensus 2 v~v~Gwv~~~R~~g 15 (82)
T cd04318 2 VTVNGWVRSVRDSK 15 (82)
T ss_pred EEEEEeEEEEEcCC
Confidence 79999999999987
No 177
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=64.22 E-value=15 Score=33.32 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecC
Q 006717 113 SAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQP 182 (634)
Q Consensus 113 ~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~ 182 (634)
....++.|+|-|||..... .|+.+-+.-.||.. ++|...... ....+..|.|.|++...
T Consensus 14 ~~~~gk~VrivGkv~~~~~---~g~~~~l~~~d~~~---V~v~l~~~~-----~~~~~~~vEviG~V~~~ 72 (109)
T PF08661_consen 14 SQFVGKTVRIVGKVESVDP---DGGSATLSTSDGGQ---VTVSLNPPS-----DEELSKYVEVIGKVNDD 72 (109)
T ss_dssp GGGTTSEEEEEEEEEEE-T---TSSEEEEE-TTS-E---EEEEESS-------SS---SEEEEEEEE-TT
T ss_pred HhhCCCeEEEEEEEeeEcC---CCCEEEEEcCCCCE---EEEEeCCCC-----CCCCCCEEEEEEEEcCC
Confidence 3456789999999999975 67776666668764 787776543 23468899999999754
No 178
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=62.92 E-value=8.7 Score=28.72 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=32.5
Q ss_pred HHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhh
Q 006717 307 SIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSH 344 (634)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (634)
.+++++..|-.||++.+.++.+.+||..|...++.++.
T Consensus 3 ~i~~qg~~vR~lK~~~a~k~~~~~~v~~L~~lK~~~~~ 40 (42)
T cd01200 3 KIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKE 40 (42)
T ss_pred HHHHhHHHHHhccccCCCHHHHHHHHHHHHHHHHHhhh
Confidence 46788999999999988999999999999988766543
No 179
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.39 E-value=6.9 Score=44.09 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=35.8
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC----HHHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ----LEDAMKCADDYFK 438 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d----~~dlm~l~E~Lik 438 (634)
-|.|.+|||||.|... .=..=||||+++|....+ --+++.++-++++
T Consensus 102 ~k~yy~g~vfRyErPQ-~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~ 152 (429)
T COG0124 102 LKLYYFGPVFRYERPQ-KGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILE 152 (429)
T ss_pred eeEEEecceecCCCCC-CCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHH
Confidence 3889999999999995 567899999999987764 1345555555544
No 180
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=61.27 E-value=19 Score=40.51 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=52.7
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCCCCceEEEEE
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKV 194 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~ 194 (634)
-.+.|.|++...=. .--|+..|+.++||.+. |-|+.-....+ ....|..||.|.+.|.++.. . |.+
T Consensus 267 ~~~~v~g~v~~~p~-~ieGghv~v~i~d~~G~--I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~------~--~n~ 335 (421)
T COG1571 267 SKYRVVGRVEAEPR-AIEGGHVVVEITDGEGE--IGAVAFEPTKEFRELARKLIPGDEITVYGSVKPG------T--LNL 335 (421)
T ss_pred cceEEEEEEecccE-EeeCCEEEEEecCCCce--EEEEEecccccchHHHHhcCCCCEEEEecCcccc------c--eeE
Confidence 46788888876532 12578999999999984 88877554433 34678999999999998642 2 667
Q ss_pred eeeEEEec
Q 006717 195 EKILHIGT 202 (634)
Q Consensus 195 ~~i~vlg~ 202 (634)
+++.++.-
T Consensus 336 ek~~v~~l 343 (421)
T COG1571 336 EKFQVLKL 343 (421)
T ss_pred EEEEEEEe
Confidence 77666543
No 181
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=61.25 E-value=24 Score=32.80 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=35.8
Q ss_pred EEEEEeCCC-CCCCCCCCCCcEEEEEEEEecCCC-----CC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTL-VSPSKIRPIGTCLMVEGVLKQPSV-----QG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~-~~~~~~l~~Gs~V~V~G~l~~~~~-----~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-... ....+.|+.|+-|.|+|.|....- |. ...+||.|++|..|+..
T Consensus 46 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 46 FNLEIWGKTAQVAADYVKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred EEEEEehHHHHHHHHHcCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 666654332 113356899999999999986521 11 24689999999998754
No 182
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=60.73 E-value=9.1 Score=42.61 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=34.4
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCC----HHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ----LEDAMKCADDYFK 438 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d----~~dlm~l~E~Lik 438 (634)
|.|++|+|||.|... .-+.-||+|+.+|.-..+ --+++.++-+.++
T Consensus 101 r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~ 150 (423)
T PRK12420 101 KRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAELMSMAFELFR 150 (423)
T ss_pred eEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHHHHHHHHHHHH
Confidence 889999999999875 557999999999986553 2355555544444
No 183
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=60.59 E-value=1.1e+02 Score=31.61 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=54.5
Q ss_pred ccccccceeeecc---CCCCCCC-ceEEEEEE-c----CccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCC----
Q 006717 117 SNNVPLREKLEAL---VPKPPPP-STVFLQVS-D----GSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPS---- 183 (634)
Q Consensus 117 ~~~V~vrGRi~~~---R~~~~~G-~l~Fl~l~-D----gs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~---- 183 (634)
-..|.+.|||..- |. -|.| .++-+.|- + .+.. +.|++-.....+...++.||-|.|+|.+....
T Consensus 109 ~N~V~LiGrL~~DPelR~-t~~G~~va~f~lAvnr~~~~td~--i~~v~wg~~Ae~~~~l~KG~~V~V~GrL~sr~y~~k 185 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRT-TPFGREIADLLLAVNRPYNKSDY--IPCIAWGRNARFCKTLEVGDNIRVWGRVQSREYQKK 185 (219)
T ss_pred ccEEEEEEEccCCCeEEE-CCCCCEEEEEEEEEcCCCCCceE--EEEEEEhHHhHHHhhCCCCCEEEEEEEEEecceEcC
Confidence 3688999999763 43 2344 45544443 1 1333 77776543322334589999999999998652
Q ss_pred CC-----CCceEEEEEeeeEEEecC
Q 006717 184 VQ-----GKHAVELKVEKILHIGTV 203 (634)
Q Consensus 184 ~~-----~~q~vEL~~~~i~vlg~~ 203 (634)
.+ +....||.|++++.++..
T Consensus 186 ~g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 186 LSEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred CCCccceEEEEEEEEEEEEEEcCCh
Confidence 11 124799999999998764
No 184
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=60.49 E-value=6 Score=35.09 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=13.5
Q ss_pred EEEEEEEEeecccCC
Q 006717 47 RVVIGGWVKTSKEVK 61 (634)
Q Consensus 47 ~~~~~gwv~~~r~~~ 61 (634)
.|+|.|||.++|.++
T Consensus 1 ~V~i~Gwv~~~R~~g 15 (102)
T cd04320 1 EVLIRARVHTSRAQG 15 (102)
T ss_pred CEEEEEEEEEeecCC
Confidence 389999999999987
No 185
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=60.15 E-value=3.9 Score=46.84 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhh--CCcEEeeCCeeecCC
Q 006717 238 RIRSSLTHATHTFFQN--HGFLYVQVPVITTTD 268 (634)
Q Consensus 238 riRs~l~~air~ff~~--~gF~eV~TPiLt~s~ 268 (634)
.+++.|..+.|++|-. .+++||+||+|+...
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~ 73 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILPEE 73 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCcHH
Confidence 5788899999999955 589999999999753
No 186
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=59.49 E-value=61 Score=27.90 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=43.2
Q ss_pred cccceeeeccCC--CCCCCceEEEEEEcCccceeEEEEEeC-CCCCCCCCCC-CCcEEEEEEEEecCCCCCCceEEEEEe
Q 006717 120 VPLREKLEALVP--KPPPPSTVFLQVSDGSCVASLQVVVES-TLVSPSKIRP-IGTCLMVEGVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 120 V~vrGRi~~~R~--~~~~G~l~Fl~l~Dgs~~~~lQvV~~~-~~~~~~~~l~-~Gs~V~V~G~l~~~~~~~~q~vEL~~~ 195 (634)
|.|.|.|-..-. -+.+..+.-+.|.|.+.. +-|-.=. +.......+. .|+.|.|.|.+....- .++..+.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~S--i~~K~F~~~~~~~~~~ik~~G~~v~v~G~v~~D~f--~~e~~~~i~ 77 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSS--ITVKKFLRKDEKDKEELKSKGDWVRVRGKVQYDTF--SKELVLMIN 77 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCC--EEEEEeccCChhHHhhcccCCCEEEEEEEEEEccC--CCceEEEee
Confidence 456666654421 011224555889998875 5553322 1111124578 9999999999976532 356666666
Q ss_pred eeE
Q 006717 196 KIL 198 (634)
Q Consensus 196 ~i~ 198 (634)
.+.
T Consensus 78 ~i~ 80 (82)
T cd04484 78 DIE 80 (82)
T ss_pred eEE
Confidence 554
No 187
>PLN02502 lysyl-tRNA synthetase
Probab=58.89 E-value=10 Score=44.15 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=27.1
Q ss_pred ccccccHHHHhhcCC---CCCCCCCcEEEEEEEEeecccCC
Q 006717 24 YSNRVLLKTILESGD---GGLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 24 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
+....+++++.+.-+ .+....|+.|+|.|||.++|.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G 124 (553)
T PLN02502 84 FDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG 124 (553)
T ss_pred CCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC
Confidence 334456777765422 13446789999999999999997
No 188
>cd00935 GlyRS_RNA GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=58.63 E-value=16 Score=28.62 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=37.4
Q ss_pred HHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhh
Q 006717 303 ILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLE 346 (634)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (634)
.+.+.+++++..|-.+|++.+.+..+.+|+..|+..+..++..+
T Consensus 3 ~l~~~v~~qg~~vR~lk~~~a~~~~~~~a~~~L~~~k~~l~~~~ 46 (51)
T cd00935 3 PLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLEDKE 46 (51)
T ss_pred HHHHHHHHhhHHHHhhccccCcHHHHHHHHHHHHHHHHHhhhHh
Confidence 35678899999999999988888999999999999887666554
No 189
>PLN02850 aspartate-tRNA ligase
Probab=58.31 E-value=8.2 Score=44.61 Aligned_cols=29 Identities=24% Similarity=0.227 Sum_probs=23.7
Q ss_pred cccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCC
Q 006717 27 RVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
++.|.+|-. ...|++|+|.|||.++|.++
T Consensus 69 ~~~i~~l~~------~~~g~~V~v~Grv~~~R~~g 97 (530)
T PLN02850 69 WTDVSDLGE------ELAGSEVLIRGRVHTIRGKG 97 (530)
T ss_pred EeEhhhcch------hhCCCEEEEEEEEEEEccCC
Confidence 466777732 35799999999999999998
No 190
>PLN02734 glycyl-tRNA synthetase
Probab=58.15 E-value=4.1 Score=48.28 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHH-hhCCcEEeeCCeeecCC
Q 006717 238 RIRSSLTHATHTFF-QNHGFLYVQVPVITTTD 268 (634)
Q Consensus 238 riRs~l~~air~ff-~~~gF~eV~TPiLt~s~ 268 (634)
.+++.|...-|++| .+.+.+||+||+||...
T Consensus 110 ~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~ 141 (684)
T PLN02734 110 AVKSNVLAFWRQHFVLEENMLEVECPCVTPEV 141 (684)
T ss_pred HHHHHHHHHHHHHHhccCCeeEeeccccCCHh
Confidence 57888999999988 55677899999999874
No 191
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=57.76 E-value=11 Score=41.49 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=34.4
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCC-H---HHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-L---EDAMKCADDYFK 438 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~---~dlm~l~E~Lik 438 (634)
|+|.+|+|||.|... .-+.-||||+.+|.-..+ . -+++.++-+.++
T Consensus 100 r~~y~g~vfR~~~~~-~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~ 149 (391)
T PRK12292 100 RLCYAGNVFRAQERG-LGRSREFLQSGVELIGDAGLEADAEVILLLLEALK 149 (391)
T ss_pred EEEeeceeeecCCCc-CCCccchhccceEEeCCCCchHHHHHHHHHHHHHH
Confidence 899999999999874 567999999999987654 2 244444444443
No 192
>PRK02801 primosomal replication protein N; Provisional
Probab=57.52 E-value=49 Score=29.75 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=32.5
Q ss_pred EEEEEeCCCC-CCCCCCCCCcEEEEEEEEec--CCCCCCceEEEEEeeeEEE
Q 006717 152 LQVVVESTLV-SPSKIRPIGTCLMVEGVLKQ--PSVQGKHAVELKVEKILHI 200 (634)
Q Consensus 152 lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~--~~~~~~q~vEL~~~~i~vl 200 (634)
++||+-.+.. ...+-+..|+-|.|+|.|.. +. .....+.|+++.|+.+
T Consensus 50 i~~va~G~~Ae~~~~~l~kGs~v~V~G~L~~~~~~-~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQFQAITQSITVGSKITVQGFISCHQGR-NGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHHHHHHhhcCCCCEEEEEEEEEEeECC-CCCEEEEEEEEEEEEC
Confidence 7787755432 23456899999999999985 22 2223355888888765
No 193
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=56.05 E-value=32 Score=33.84 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=30.8
Q ss_pred CCCCCCCcEEEEEEEEecCCC----CC-CceEEEEEeeeEEEecC
Q 006717 164 SKIRPIGTCLMVEGVLKQPSV----QG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 164 ~~~l~~Gs~V~V~G~l~~~~~----~~-~q~vEL~~~~i~vlg~~ 203 (634)
.+.|+.|+.|.|+|.|....- +. ...+||.|++|.+|+..
T Consensus 67 ~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 67 GEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred HHhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 356899999999999987521 21 25789999999998754
No 194
>PRK15491 replication factor A; Provisional
Probab=54.29 E-value=54 Score=36.37 Aligned_cols=83 Identities=8% Similarity=0.079 Sum_probs=56.1
Q ss_pred cccccceeeeccCCC------CC-CCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEE-EEecCCCCCCce
Q 006717 118 NNVPLREKLEALVPK------PP-PPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEG-VLKQPSVQGKHA 189 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~------~~-~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G-~l~~~~~~~~q~ 189 (634)
..|.|.|||.++-.. .. .|++.=+.|-|.|+. +.+.+-.+..+....|..|++|.+.+ .++.+. -++.
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~--Ir~t~W~~~a~~~~~l~~Gd~V~i~~~~~r~~~--~~g~ 252 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGK--IRVTLWDGKTDLADKLENGDSVEIINGYARTNN--YSQE 252 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCe--EEEEEecchhcccccCCCCCEEEEEeceEEEec--cCCC
Confidence 458999999988530 11 135666888888884 88877654333225688999999976 455432 2478
Q ss_pred EEEEEeeeEEEecCC
Q 006717 190 VELKVEKILHIGTVD 204 (634)
Q Consensus 190 vEL~~~~i~vlg~~~ 204 (634)
+||.+.+-..+.+|+
T Consensus 253 ~El~~~~~s~I~~~~ 267 (374)
T PRK15491 253 VEIQIGNHGSLRKTD 267 (374)
T ss_pred EEEEeCCCceEEECC
Confidence 999997766677775
No 195
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=54.01 E-value=4.3 Score=47.03 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHH-hhCCcEEeeCCeeecCC
Q 006717 237 MRIRSSLTHATHTFF-QNHGFLYVQVPVITTTD 268 (634)
Q Consensus 237 ~riRs~l~~air~ff-~~~gF~eV~TPiLt~s~ 268 (634)
.++++.|..+.|++| .++|++||+||+|++..
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~ 69 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITPEE 69 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCCHH
Confidence 478899999999988 57899999999999863
No 196
>PRK07211 replication factor A; Reviewed
Probab=52.86 E-value=53 Score=37.72 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=55.5
Q ss_pred cccccceeeeccCC------C--CCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCc
Q 006717 118 NNVPLREKLEALVP------K--PPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKH 188 (634)
Q Consensus 118 ~~V~vrGRi~~~R~------~--~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q 188 (634)
..|.|.|||..+-. + +..|++.=+.|-|.|+. |.+++-.+.. .+...|..|+++.|.|.++.. -.
T Consensus 64 ~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG~--Ir~TlW~d~ad~~~~~Le~GdV~~I~~~~~~~----ys 137 (485)
T PRK07211 64 DEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETGS--VRVAFWDEQAVAAEEELEVGQVLRIKGRPKDG----YN 137 (485)
T ss_pred CceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCCe--EEEEEechHhHhhhcccCCCCEEEEeceEecc----cc
Confidence 67899999988744 1 23579999999999995 9998865432 244678999999999987532 23
Q ss_pred eEEEEEeeeE
Q 006717 189 AVELKVEKIL 198 (634)
Q Consensus 189 ~vEL~~~~i~ 198 (634)
.+||.+.+++
T Consensus 138 ~~El~i~~ve 147 (485)
T PRK07211 138 GLEVSVDKVE 147 (485)
T ss_pred ceEEEEeeEE
Confidence 4699888643
No 197
>cd00936 WEPRS_RNA WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=52.63 E-value=17 Score=28.55 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006717 306 ASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHL 345 (634)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (634)
..+++++..|-.||++.+.+..+.+|+..|...++..++.
T Consensus 3 ~~i~~qge~VR~LK~~~a~k~~~~~av~~Ll~lK~~~k~~ 42 (50)
T cd00936 3 KKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKEA 42 (50)
T ss_pred HHHHhchHHHhhhccccCchHHHHHHHHHHHHHHHHHHHh
Confidence 3577889999999999889999999999999988765543
No 198
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=52.32 E-value=42 Score=39.95 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=52.0
Q ss_pred cccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCC-CCCCCCCcEEEEEEEEecCCCCCCceEEEEE
Q 006717 116 ISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSP-SKIRPIGTCLMVEGVLKQPSVQGKHAVELKV 194 (634)
Q Consensus 116 ~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~-~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~ 194 (634)
.++.|.|.|+|...+..+.+..+.-+.+.||++. +++++=.....+ .+.++.|+.+.|.|++.... +.+++.-
T Consensus 58 ~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~--i~l~~F~~n~~~~~~~l~~G~~~~v~Gkv~~~~----~~~qm~~ 131 (681)
T PRK10917 58 PGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGN--LTLRFFNFNQPYLKKQLKVGKRVAVYGKVKRGK----YGLEMVH 131 (681)
T ss_pred CCCEEEEEEEEEEEEEccCCceEEEEEEEECCeE--EEEEEEccCcHHHHhhCCCCCEEEEEEEEEecC----CeEEEEc
Confidence 3578999999988754222335677888999985 898876311123 46789999999999997632 3355544
Q ss_pred eeeE
Q 006717 195 EKIL 198 (634)
Q Consensus 195 ~~i~ 198 (634)
-++.
T Consensus 132 P~~~ 135 (681)
T PRK10917 132 PEYE 135 (681)
T ss_pred CEEE
Confidence 4443
No 199
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=51.86 E-value=19 Score=38.40 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=29.1
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|+|.+|+|||.|... .-+.-||||+.+|.-..+
T Consensus 88 ~r~~y~g~VfR~~~~~-~gr~re~~Q~g~Eiig~~ 121 (314)
T TIGR00443 88 LRLCYAGNVFRTNESG-AGRSREFTQAGVELIGAG 121 (314)
T ss_pred eEEEEeceEeecCCCc-CCCcccccccceEEeCCC
Confidence 4999999999999984 668999999999976544
No 200
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=49.33 E-value=61 Score=33.77 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=33.9
Q ss_pred cCceEEEccccccCcC----CCCCccccccccchhhcCCCH--HHHHHHHHHHHH
Q 006717 390 LGNVYSFGPRFRAEKK----ESSKHAAEMLMVETEIAFSQL--EDAMKCADDYFK 438 (634)
Q Consensus 390 ~~rVYeIgp~FRaE~s----~T~rHlpEFtmLE~E~af~d~--~dlm~l~E~Lik 438 (634)
..|+-..-+|.|.-+. .|.||+.=|.|| --.+|.|| ++.+..+-+++.
T Consensus 55 ~~r~~~~QkCiR~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT 108 (232)
T cd00673 55 ANRLVNSQKCIRAGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLT 108 (232)
T ss_pred CCceeeeeeceecCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHH
Confidence 4688888889997432 379999999999 44777785 555555555543
No 201
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=48.38 E-value=15 Score=42.79 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=23.9
Q ss_pred cccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCC
Q 006717 27 RVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
++.|++|-. ....|+.|+|.|||.++|.++
T Consensus 65 ~~~i~~l~~-----~~~~g~~V~v~Grv~~~R~~G 94 (550)
T PTZ00401 65 FIPVAVLSK-----PELVDKTVLIRARVSTTRKKG 94 (550)
T ss_pred eEEHHHCCc-----cccCCCEEEEEEEEEEEecCC
Confidence 467888842 123799999999999999987
No 202
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=48.35 E-value=75 Score=28.50 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=44.4
Q ss_pred CCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEE
Q 006717 114 AGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELK 193 (634)
Q Consensus 114 ~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~ 193 (634)
...++.|++-||+.+.+. +.++ +.-.||. .++|.+.... .+..+-.|.|.|++... ..|.
T Consensus 12 ~f~gk~V~ivGkV~~~~~----~~~~-~~~~Dg~---~v~v~l~~~~-----~~~~~~~vEViG~V~~~-------~~I~ 71 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDG----DSLT-LISSDGV---NVTVELNRPL-----DLPISGYVEVIGKVSPD-------LTIR 71 (101)
T ss_pred hhCCCEEEEEEEEEEecC----CeEE-EEcCCCC---EEEEEeCCCC-----CcccCCEEEEEEEECCC-------CeEE
Confidence 345689999999999975 2222 2234552 4898877543 25677899999999642 3355
Q ss_pred EeeeEEEec
Q 006717 194 VEKILHIGT 202 (634)
Q Consensus 194 ~~~i~vlg~ 202 (634)
+....-+|.
T Consensus 72 ~~~~~~~g~ 80 (101)
T cd04479 72 VLSYIDFGD 80 (101)
T ss_pred EEEEEECCC
Confidence 555544443
No 203
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.69 E-value=67 Score=37.89 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=66.9
Q ss_pred eeeeecCCCCCcccccccceeeeccCC------CCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEE-
Q 006717 105 TIIRVLGGSAGISNNVPLREKLEALVP------KPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVE- 176 (634)
Q Consensus 105 ~~~~v~~~~~~~~~~V~vrGRi~~~R~------~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~- 176 (634)
.+..|.++.... ...+|+|||.++-. ++..|++.-++|.|.++. |++.+-.+.. .|...|..|+++.+.
T Consensus 179 ~~~pI~~L~py~-~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg~--Irat~f~~~~dkf~~~l~eG~VY~Is~ 255 (608)
T TIGR00617 179 RVMPIASLSPYQ-NKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESGE--IRATAFNEQADKFYDIIQEGKVYYISK 255 (608)
T ss_pred ceEEHHHCCCCC-CceEEEEEEEeccccceecCCCCCceeeEEEEecCCCe--EEEEECchHHHHHhhhcccCCEEEECc
Confidence 466677776654 45889999986321 112368888899997764 9998866532 355779999999996
Q ss_pred EEEecCCC---CCCceEEEEEeeeEEEecCC
Q 006717 177 GVLKQPSV---QGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 177 G~l~~~~~---~~~q~vEL~~~~i~vlg~~~ 204 (634)
|.|+.... .....+||..++-..+-+|.
T Consensus 256 ~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 256 GSLKPANKQFTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred eEEEEccccccCCCCCEEEEECCCeEEEECC
Confidence 56655421 12467999998877777774
No 204
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=47.17 E-value=20 Score=41.07 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=24.4
Q ss_pred cccccHHHHhhcCCC----CCCCCCcEEEEEEEEeecccCC
Q 006717 25 SNRVLLKTILESGDG----GLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 25 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
....+++++.++-+. .....|+.|+|.|||+++|..|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g 69 (496)
T TIGR00499 29 ERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG 69 (496)
T ss_pred CCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC
Confidence 333567777553221 1123488999999999999877
No 205
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=46.54 E-value=23 Score=39.16 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 242 SLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 242 ~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.+...+++.|..+||.||.||++...+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e 35 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAE 35 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHH
Confidence 788889999999999999999997654
No 206
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=45.49 E-value=80 Score=30.81 Aligned_cols=96 Identities=24% Similarity=0.310 Sum_probs=62.3
Q ss_pred cccccceeeeeecCCCCCcccccccceeeeccCCCC--CCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEE
Q 006717 98 SRIPFFRTIIRVLGGSAGISNNVPLREKLEALVPKP--PPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMV 175 (634)
Q Consensus 98 s~~~~fr~~~~v~~~~~~~~~~V~vrGRi~~~R~~~--~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V 175 (634)
|.+..|-.-.++.......+..+++=|=|+.--.+| ...++.| ++.|+-. .++|.....+. .+++.|.-|.+
T Consensus 32 ~ni~~fy~Psel~~~~~~~G~rlR~GGlV~~GSv~R~~~~~~v~F-~vtD~~~--~v~V~Y~GiLP---DLFREGQgVVa 105 (153)
T COG2332 32 SNIDYFYTPSELLEGKVETGQRLRLGGLVEAGSVQRDPGSLKVSF-VVTDGNK--SVTVSYEGILP---DLFREGQGVVA 105 (153)
T ss_pred cCceEEECHHHhccccccCCcEEEEeeeEeeceEEecCCCcEEEE-EEecCCc--eEEEEEeccCc---hhhhcCCeEEE
Confidence 345555555566666666677777766665433333 3448888 4578865 49988876654 35789999999
Q ss_pred EEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 176 EGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 176 ~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
+|.+.... . +.++ +||.++| ++|-
T Consensus 106 ~G~~~~~~-----~--f~A~--~vLAKHd-EnY~ 129 (153)
T COG2332 106 EGQLQGGG-----V--FEAK--EVLAKHD-ENYT 129 (153)
T ss_pred EEEecCCC-----E--EEee--ehhhcCC-cccC
Confidence 99996531 2 2233 4677887 5773
No 207
>PRK07211 replication factor A; Reviewed
Probab=44.89 E-value=88 Score=35.99 Aligned_cols=92 Identities=15% Similarity=0.058 Sum_probs=61.5
Q ss_pred eeeecCCCCCcccccccceeeeccCCCC-------CCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEE-
Q 006717 106 IIRVLGGSAGISNNVPLREKLEALVPKP-------PPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEG- 177 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~R~~~-------~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G- 177 (634)
++.|.++.. ....|.|.|||..+-.-| ..|++.=+.|-|.|+. |.+.+-.+.......|..|++|.|.|
T Consensus 161 ~~~I~dL~~-~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~--IR~TlW~d~Ad~~~~le~G~Vv~I~~a 237 (485)
T PRK07211 161 TYTVEDLSL-GLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGR--VRVTLWDDRADLAEELDAGESVEIVDG 237 (485)
T ss_pred CccHHHcCC-CCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCe--EEEEEechhhhhhccCCCCCEEEEEee
Confidence 344444442 246788999998553211 1347777889999985 88887665433225688999999975
Q ss_pred EEecCCCCCCceEEEEEeeeEEEecCC
Q 006717 178 VLKQPSVQGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 178 ~l~~~~~~~~q~vEL~~~~i~vlg~~~ 204 (634)
.++.- .+.+||.+..-..+.+|+
T Consensus 238 ~Vre~----~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 238 YVRER----DGSLELHVGDRGAVEEVD 260 (485)
T ss_pred EEEec----CCcEEEEECCCceEEECC
Confidence 55432 478999998777777764
No 208
>PRK07218 replication factor A; Provisional
Probab=43.14 E-value=1.2e+02 Score=34.41 Aligned_cols=83 Identities=8% Similarity=0.012 Sum_probs=54.6
Q ss_pred eecCCCCCcccccccceeeeccCCC-----CCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecC
Q 006717 108 RVLGGSAGISNNVPLREKLEALVPK-----PPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQP 182 (634)
Q Consensus 108 ~v~~~~~~~~~~V~vrGRi~~~R~~-----~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~ 182 (634)
+|+++... .+.|.|.|||..+-.+ ...|.+.=+.|-|.||. +.+++-.+. .+..|++|.|.+-.+..
T Consensus 60 kI~Di~~~-~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~--Ir~tlW~~~-----~l~~Gdvv~I~na~vre 131 (423)
T PRK07218 60 DIKELSTD-DKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGT--ISYTAWKDF-----GLSPGDTVTIGNAGVRE 131 (423)
T ss_pred cHhhCCCC-CceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCe--EEEEEECCC-----CCCCCCEEEEeccEeec
Confidence 34444333 3788999999988420 12356666777777775 777765532 38999999999876654
Q ss_pred CCCCCceEEEEEeeeEEEe
Q 006717 183 SVQGKHAVELKVEKILHIG 201 (634)
Q Consensus 183 ~~~~~q~vEL~~~~i~vlg 201 (634)
- .+.+||.+.+-.-|.
T Consensus 132 ~---~g~~el~ig~~t~I~ 147 (423)
T PRK07218 132 W---DGRPELNIGESTTVS 147 (423)
T ss_pred c---CCceEEeccCcceEE
Confidence 3 467899875544333
No 209
>PRK07217 replication factor A; Reviewed
Probab=40.62 E-value=2.3e+02 Score=30.92 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=61.0
Q ss_pred ccccccceeeeccCCCCCCCceEE-EEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEe
Q 006717 117 SNNVPLREKLEALVPKPPPPSTVF-LQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l~F-l~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~ 195 (634)
.+.|.|.|||..+=. |..+.+.+ -.|-|.|+. |-.+.-.+.. ...+..|++|.+.+..+..- .+.++|.+.
T Consensus 82 ~~~VsV~aKVl~l~e-~~~~si~qvGllgDETG~--IkfT~W~~s~--~~~leeGd~~rI~na~v~ey---~G~~~lnlg 153 (311)
T PRK07217 82 EQWVDVTAKVVQLWE-PSSDSIAQVGLLGDETGT--IKFTKWAKSD--LPELEEGKSYLLKNVVTDEY---QGRFSVKLN 153 (311)
T ss_pred CCcEEEEEEEEEecC-CCCCceEEEEEEEcCCce--EEEEEccCCC--CCcccCCCEEEEEeEEEeeE---CCEEEEEeC
Confidence 357899999998855 44566776 567899885 7776654321 23488999999999888754 578999998
Q ss_pred eeEEEecCCCCCCCC
Q 006717 196 KILHIGTVDHDKYPL 210 (634)
Q Consensus 196 ~i~vlg~~~~~~yPl 210 (634)
+...+...+ ++.++
T Consensus 154 ~~t~I~~~d-e~IeV 167 (311)
T PRK07217 154 RTTSIEELD-EDIEV 167 (311)
T ss_pred CceEEEeCC-CCccc
Confidence 877776664 34444
No 210
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=39.58 E-value=22 Score=36.05 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 242 SLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 242 ~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
.+.+.+|++|...||.||.|+.+++.
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~ 30 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETD 30 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccc
Confidence 45667899999999999999999765
No 211
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=38.51 E-value=23 Score=37.50 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=37.4
Q ss_pred ceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 544 TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 544 ~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
.--.+|+.+ +|+||.-= .=|++ -.|++ --|..+=+--|+|||.|+|-|.+||-|++
T Consensus 121 wGlGWEVWl-dGMEITQf----TYFQQ------vGGi~-------------~~pv~~EITYGLERiamylQ~vdnv~dl~ 176 (284)
T PF02091_consen 121 WGLGWEVWL-DGMEITQF----TYFQQ------VGGID-------------CKPVSVEITYGLERIAMYLQGVDNVYDLI 176 (284)
T ss_dssp EEEEEEEEE-TTCEEEEE----EEEEE------ETTEE--------------SS--EEEEEEHHHHHHHHCT-SSGGGSE
T ss_pred cccccEEEE-CCEEEEEe----eeeee------eCCcc-------------ccccceehhhhHHHHHHHHhCCCeeEeee
Confidence 456899999 89999631 00000 01222 14667789999999999999999999985
Q ss_pred c
Q 006717 624 P 624 (634)
Q Consensus 624 ~ 624 (634)
-
T Consensus 177 w 177 (284)
T PF02091_consen 177 W 177 (284)
T ss_dssp E
T ss_pred e
Confidence 3
No 212
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=37.85 E-value=34 Score=39.24 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=24.4
Q ss_pred ccccccHHHHhhcCCC----CCCCCCcEEEEEEEEeecccCC
Q 006717 24 YSNRVLLKTILESGDG----GLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 24 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
+....+++++..+..+ .....++.|+|.|||.++|.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g 70 (491)
T PRK00484 29 FERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG 70 (491)
T ss_pred CcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC
Confidence 3444567777654321 0011247899999999999987
No 213
>PRK00036 primosomal replication protein N; Reviewed
Probab=37.16 E-value=59 Score=29.98 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=37.0
Q ss_pred EEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEec
Q 006717 152 LQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 152 lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~ 202 (634)
||+|+........+.++.|+.|.|+|-+.... .....+=|+++.|+.+..
T Consensus 49 i~ava~G~~a~~~~~l~~Gs~v~v~GFLa~~~-~~~~~LVLHi~~Ie~i~~ 98 (107)
T PRK00036 49 ISAVALGDLALLLADTPLGTEMQVQGFLAPAR-KDSVKVKLHLQQARRIAG 98 (107)
T ss_pred EEEEEEhhHHHHhcccCCCCEEEEEEEEEECC-CCCCcEEEEhHHeEEccc
Confidence 78887664332335689999999999998744 334678899999988844
No 214
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=37.00 E-value=68 Score=29.13 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=35.6
Q ss_pred EEEEEeCCC-CCCCCCCCCCcEEEEEEEEecCCC----CC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTL-VSPSKIRPIGTCLMVEGVLKQPSV----QG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~-~~~~~~l~~Gs~V~V~G~l~~~~~----~~-~q~vEL~~~~i~vlg~~ 203 (634)
+-|++-... ..+.+.+..|+-|.|+|.|....- |. ...+||.|++|.+|+..
T Consensus 49 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 49 INCVVWRKSAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEehHHHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 455553322 123456899999999999987631 22 25689999999998754
No 215
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=36.10 E-value=24 Score=37.14 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=39.9
Q ss_pred ceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 544 TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 544 ~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
.--.+|+.+ +|+||.-= .=|++ --|++ -.|..+=+--|+|||.|+|-|.+||-|+.
T Consensus 126 wGlGWEVWl-dGMEITQF----TYFQQ------vGGi~-------------~~pv~~EITYGLERiamylQ~vd~v~dl~ 181 (283)
T PRK09348 126 WGLGWEVWL-DGMEVTQF----TYFQQ------VGGIE-------------CKPVTGEITYGLERLAMYLQGVDNVYDLV 181 (283)
T ss_pred cccceEEEE-CCeeeeee----eeeee------eCCee-------------ccccceeeehhHHHHHHHHhCCCceeeee
Confidence 345799999 79998521 11111 12333 14667788899999999999999999875
Q ss_pred c
Q 006717 624 P 624 (634)
Q Consensus 624 ~ 624 (634)
-
T Consensus 182 w 182 (283)
T PRK09348 182 W 182 (283)
T ss_pred c
Confidence 3
No 216
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=35.89 E-value=25 Score=37.02 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=39.4
Q ss_pred ceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 544 TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 544 ~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
.--.+|+.+ +|+||.-= .=|++ --|++ -.|..+=+--|+|||.|+|-|.+||-|..
T Consensus 122 wGLGWEVWl-dGMEITQF----TYFQQ------vGGi~-------------~~pv~~EiTYGLERiamylQ~vd~v~dl~ 177 (279)
T cd00733 122 WGLGWEVWL-DGMEVTQF----TYFQQ------VGGIP-------------CKPISVEITYGLERIAMYLQGVDNVYDIE 177 (279)
T ss_pred cccccEEEE-CCeeeeee----eeeee------eCCee-------------ccccceeeehhHHHHHHHHhCCCceeccc
Confidence 345799999 89998521 11111 12333 14667788899999999999999998875
No 217
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=35.53 E-value=1.6e+02 Score=34.78 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=31.6
Q ss_pred ceEEEEEEc-CccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecC
Q 006717 137 STVFLQVSD-GSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQP 182 (634)
Q Consensus 137 ~l~Fl~l~D-gs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~ 182 (634)
++.-+.+.| |++. +.+++=.. .-..+.++.|+.|.|.|++...
T Consensus 53 ~~~~~~~~d~~~~~--~~~~~F~~-~~~~~~~~~g~~~~~~Gk~~~~ 96 (630)
T TIGR00643 53 KVLKLRLKDGGYKK--LELRFFNR-AFLKKKFKVGSKVVVYGKVKSS 96 (630)
T ss_pred ceEEEEEEECCCCE--EEEEEECC-HHHHhhCCCCCEEEEEEEEEee
Confidence 345567899 8875 88887642 1124678999999999999764
No 218
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=35.46 E-value=46 Score=32.64 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=36.9
Q ss_pred EEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCC----CCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPS----VQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~----~~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.||+-.... ...+.++.|+-|.|+|.|.... .|. ....||.|++|..|+..
T Consensus 49 i~vv~wgk~Ae~~~~~l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQAENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHHHHHHHHcCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 6777654432 2345689999999999998652 122 36789999999988654
No 219
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=35.39 E-value=1.3e+02 Score=26.48 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=43.5
Q ss_pred ccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCC
Q 006717 121 PLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSV 184 (634)
Q Consensus 121 ~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~ 184 (634)
.+.|-|..++. .+.=+|+.|.|-||- +++.+-.+.. .+...|..|+++.++-+-+-+|.
T Consensus 6 ~l~v~Iks~~~---~~~D~~v~l~DpTG~--i~~tiH~~v~~~y~~~l~~GavLlLk~V~Vf~ps 65 (86)
T PF15072_consen 6 CLVVIIKSIVP---SSEDAFVVLKDPTGE--IRGTIHRKVLEEYGDELSPGAVLLLKDVTVFSPS 65 (86)
T ss_pred EEEEEEEEeec---cCCCeEEEEECCCCc--EEEEEeHHHHhhcCCccccCEEEEEeeeeEEecC
Confidence 35666666665 444579999999995 9999976542 35677999999999876666553
No 220
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=34.71 E-value=36 Score=39.36 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.0
Q ss_pred CcceeeccHHHHHHHhcCCCCcCcc--ccCCCCCC
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDA--IPFPRSLG 630 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdV--i~FPr~~~ 630 (634)
|...|+|++|||+|...+.++||+. -+||++|.
T Consensus 317 pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFPa 351 (529)
T PRK06253 317 PVMNLGLGVERLAMILYGAEDVREMVYPQFYEWEL 351 (529)
T ss_pred ceEEEEEeHHHHHhhhcCcccccccCcCCCCCCCC
Confidence 4578999999999999998999994 36666664
No 221
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=34.25 E-value=67 Score=27.48 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=33.6
Q ss_pred eEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCC----C-CCceEEEEEeeeEE
Q 006717 151 SLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSV----Q-GKHAVELKVEKILH 199 (634)
Q Consensus 151 ~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~----~-~~q~vEL~~~~i~v 199 (634)
.++|++-.+.. .+.+.++.||.|.|+|.+....- + ....+++.+++|.+
T Consensus 45 ~~~v~~~g~~a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~ 99 (100)
T cd04496 45 WIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEF 99 (100)
T ss_pred EEEEEEEhHHHHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEE
Confidence 47776655421 23456899999999999987632 1 23668888888765
No 222
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.11 E-value=11 Score=42.71 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHH-hhCCcEEeeCCeeecCC
Q 006717 238 RIRSSLTHATHTFF-QNHGFLYVQVPVITTTD 268 (634)
Q Consensus 238 riRs~l~~air~ff-~~~gF~eV~TPiLt~s~ 268 (634)
-+.|.|+...|+.| .+.+-+||++|+||+-+
T Consensus 47 alk~Nil~~WRkhFilEE~MlEvdct~ltP~~ 78 (599)
T KOG2298|consen 47 ALKSNILSLWRKHFILEEDMLEVDCTMLTPEP 78 (599)
T ss_pred hhHHhHHHHHHHHHhhhhcceeeccCcCCcHH
Confidence 46778888888877 77899999999999864
No 223
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=33.91 E-value=72 Score=31.91 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=31.3
Q ss_pred CCCCCCCcEEEEEEEEecCC----CC-CCceEEEEEeeeEEEecC
Q 006717 164 SKIRPIGTCLMVEGVLKQPS----VQ-GKHAVELKVEKILHIGTV 203 (634)
Q Consensus 164 ~~~l~~Gs~V~V~G~l~~~~----~~-~~q~vEL~~~~i~vlg~~ 203 (634)
.+.|+.|+.|.|+|.|..+. .+ +...+||.|++|.+|+..
T Consensus 64 ~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 64 NQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred HHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 45689999999999998652 12 236799999999998765
No 224
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=33.43 E-value=41 Score=38.86 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=33.8
Q ss_pred ceEEEccccccCcCCCCCccccccccchhh--cCCCHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEI--AFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~--af~d~~dlm~l~E~Lik~l 440 (634)
|+||||+|||.+.....+|+..+.+...-. .-.|+.|+...+|.|+..+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 899999999886322346777766664211 1237889988888888653
No 225
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=33.30 E-value=1.4e+02 Score=31.73 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=50.9
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCCCCceEEEEE
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKV 194 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~ 194 (634)
-.|.+-|+|..+-. ...=++++|-||++. +=|..-..... ....+..|..|.|.|.|+... |...|.+
T Consensus 69 ~~v~~VGivr~~e~---~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~l~~~~yVkv~G~Lk~f~----Gk~sl~~ 139 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEK---SATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPALETGTYVKVYGHLKPFQ----GKKSLQV 139 (265)
T ss_pred EEEEEEEEEEecee---cCcceEEEEecCccc--EEEEEeccccchhhhCcccccCcEEEeeecccCCC----CceeEEE
Confidence 46688899988876 566677899999996 44444322111 234689999999999997643 4556666
Q ss_pred eeeEEE
Q 006717 195 EKILHI 200 (634)
Q Consensus 195 ~~i~vl 200 (634)
.+|.-+
T Consensus 140 fkI~pv 145 (265)
T KOG3108|consen 140 FKIRPV 145 (265)
T ss_pred Eeeeee
Confidence 666543
No 226
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=32.78 E-value=1e+02 Score=31.82 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCCCCCCCCCcEEEEEEEEec---C-CCCCCceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLVSPSKIRPIGTCLMVEGVLKQ---P-SVQGKHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~---~-~~~~~q~vEL~~~~i~vlg~~ 203 (634)
|.|++......... +..|+.|.|+|.+.. . +.++.-.+|+.|.+|..++..
T Consensus 49 i~v~v~~rlae~~~-l~kG~~v~VeGqlrsy~~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 49 LPVTVSERLLAGMD-LKVGTLVIVEGQLRSYNKFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred EEEEEEhhhhhhhc-ccCCCEEEEEEEEEEeccCCCCcEEEEEEEEEEEEEEccCC
Confidence 77777665433323 899999999999991 1 112346789999999988764
No 227
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=32.74 E-value=92 Score=39.58 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=32.9
Q ss_pred cCceEEEccccccCcCCCCCccccccccchhhcCCC----HHHHHHHHHHHHHH
Q 006717 390 LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ----LEDAMKCADDYFKF 439 (634)
Q Consensus 390 ~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d----~~dlm~l~E~Lik~ 439 (634)
.-|-|+|+++||-+.. + |--|||.+++-.---+ --+++.++-+++..
T Consensus 1004 ~~Kry~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 1004 SFKRYCISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE 1054 (1351)
T ss_pred HHHHhhhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH
Confidence 3455899999999883 4 9999999988654432 24556666666555
No 228
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=32.20 E-value=82 Score=31.15 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=36.7
Q ss_pred EEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCC----CC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSV----QG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~----~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-.... .+.+.|+.|+.|.|+|.|....- |. ...+||.+++|.+|+..
T Consensus 54 ~~Vv~fgk~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 54 HRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEhHHHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 6666644321 23466899999999999987631 22 35789999999998754
No 229
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=31.87 E-value=79 Score=27.39 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=29.5
Q ss_pred EEEEEeCCCCC-CCCCCCCCcEEEEEEEEecCC----CC-CCceEEEEEeeeEEE
Q 006717 152 LQVVVESTLVS-PSKIRPIGTCLMVEGVLKQPS----VQ-GKHAVELKVEKILHI 200 (634)
Q Consensus 152 lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~~----~~-~~q~vEL~~~~i~vl 200 (634)
++|++-.+... +.+.+..|+.|.|+|.+.... .| ....+||.|++|.+|
T Consensus 50 ~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 50 INVVAWGKLAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEeeeecccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 56655433211 234588999999999997642 12 236789999998875
No 230
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=30.54 E-value=1.4e+02 Score=28.85 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=33.3
Q ss_pred EEEEEeCC-C-CCCCCCCCCCcEEEEEEEEecCCC----CC-CceEEEEEeee----EEEecC
Q 006717 152 LQVVVEST-L-VSPSKIRPIGTCLMVEGVLKQPSV----QG-KHAVELKVEKI----LHIGTV 203 (634)
Q Consensus 152 lQvV~~~~-~-~~~~~~l~~Gs~V~V~G~l~~~~~----~~-~q~vEL~~~~i----~vlg~~ 203 (634)
+.|++-.+ . ....+.|+.|+.|.|+|.|....- |. ....||.|+++ ..|+..
T Consensus 55 ~~v~~~g~~~Ae~~~~~l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 55 HRVVIFSEGLVSVVERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred EEEEEeChHHHHHHHHhCCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 56665432 1 123456899999999999986521 21 25688888876 566543
No 231
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=30.13 E-value=84 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCCCCCcEEEEEEEEecCCCCCCceEEEEEee-eEEEe
Q 006717 165 KIRPIGTCLMVEGVLKQPSVQGKHAVELKVEK-ILHIG 201 (634)
Q Consensus 165 ~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~-i~vlg 201 (634)
..+..||.|.|+|++..-. +..||.... +++++
T Consensus 43 ~~~~~Gd~V~vtG~v~ey~----g~tql~~~~~~~~~~ 76 (78)
T cd04486 43 ADVAVGDLVRVTGTVTEYY----GLTQLTAVSAIEVLG 76 (78)
T ss_pred CCCCCCCEEEEEEEEEeeC----CeEEEccCCceEEec
Confidence 4578999999999998754 456666644 55554
No 232
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=30.02 E-value=95 Score=30.85 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=36.2
Q ss_pred EEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCC----CC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSV----QG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~----~~-~q~vEL~~~~i~vlg~~ 203 (634)
+-|++-.... .+.+.|+.|+.|.|+|.|....- +. ...+||.|+.|.+|...
T Consensus 49 i~~v~wgk~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 49 INCVIWRKQAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEeCcHHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 6666644321 23456899999999999987632 22 25789999999888643
No 233
>PLN02972 Histidyl-tRNA synthetase
Probab=29.91 E-value=38 Score=40.95 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=34.0
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCC-C-H---HHHHHHHHHHHH
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS-Q-L---EDAMKCADDYFK 438 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~-d-~---~dlm~l~E~Lik 438 (634)
-|.|+||++||.|... .-+.-||+|+.+|.... + . -+++.++-+.++
T Consensus 418 ~KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~ 469 (763)
T PLN02972 418 FKRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLD 469 (763)
T ss_pred ceEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHH
Confidence 3788899999999874 55788999999999874 2 1 344555544443
No 234
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=29.89 E-value=54 Score=38.55 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=23.8
Q ss_pred ccccHHHHhhcCCC---CCCCCCcEEEEEEEEeecccCC
Q 006717 26 NRVLLKTILESGDG---GLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
...+++++.++-+. +....++.|+|.|||.++|.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G 148 (585)
T PTZ00417 110 RTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASG 148 (585)
T ss_pred CCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCC
Confidence 33567777654321 1112456799999999999997
No 235
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.24 E-value=72 Score=31.13 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=36.6
Q ss_pred EEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCC----CCC-CceEEEEEeeeEEEecCC
Q 006717 152 LQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPS----VQG-KHAVELKVEKILHIGTVD 204 (634)
Q Consensus 152 lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~----~~~-~q~vEL~~~~i~vlg~~~ 204 (634)
+-|++-.... .+.+.|..|+.|.|+|.|.... .+. ...+||.|++|..|...+
T Consensus 53 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~~ 111 (164)
T TIGR00621 53 HDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLLG 111 (164)
T ss_pred EEEEEehHHHHHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeeccccC
Confidence 6666544321 2345689999999999998652 122 367899999998776543
No 236
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=29.23 E-value=35 Score=36.21 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=39.8
Q ss_pred ceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 544 TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 544 ~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
.--.+|+-+ +|+||.-= .=|++ --|++ --|..+=+--|+|||.|+|-|.+||-|..
T Consensus 123 wGlGWEVWl-dGMEITQF----TYFQQ------vGGi~-------------~~pv~~EITYGLERiaMylQ~vd~v~dl~ 178 (293)
T TIGR00388 123 WGLGWEVWL-DGMEVTQF----TYFQQ------VGGLE-------------CKPVSVEITYGLERLAMYIQGVENVYDLE 178 (293)
T ss_pred cccccEEEE-CCeeeeee----eeeee------eCCee-------------ccccceeeehhHHHHHHHHhCCCeeeeee
Confidence 345799999 89998521 11111 12333 14556778889999999999999999876
Q ss_pred cC
Q 006717 624 PF 625 (634)
Q Consensus 624 ~F 625 (634)
-=
T Consensus 179 w~ 180 (293)
T TIGR00388 179 WS 180 (293)
T ss_pred ec
Confidence 43
No 237
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=28.69 E-value=35 Score=36.13 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=30.3
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCC-HHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-LEDAMKCADDYFK 438 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~~dlm~l~E~Lik 438 (634)
|.|.+|++||.|. .||+|+.+|.-..+ ..+++.++-+.++
T Consensus 97 r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~ 137 (281)
T PRK12293 97 KWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFE 137 (281)
T ss_pred eEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHH
Confidence 8999999999874 59999999988775 5455555544443
No 238
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=27.34 E-value=73 Score=39.72 Aligned_cols=45 Identities=11% Similarity=-0.058 Sum_probs=33.3
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPS 183 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~ 183 (634)
.++|+.|.|.++. +.|++-++.....+.+..|+.+.|+|+...+.
T Consensus 918 ~maf~~~eD~~~~--~e~~~F~~~~~~~~~l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 918 EYKKVILSDDSVE--ITIFVNDNDYLLFETLKKGDIYEFLISKSKNN 962 (973)
T ss_pred eEEEEEEEECCCc--EEEEEcHHHHHHHHHhhcCCEEEEEEEEcCCC
Confidence 7999999999996 99988654321112367888999999886653
No 239
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=26.45 E-value=1.1e+02 Score=30.64 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=36.2
Q ss_pred EEEEEeCCC-CCCCCCCCCCcEEEEEEEEecCC----CC-CCceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTL-VSPSKIRPIGTCLMVEGVLKQPS----VQ-GKHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~-~~~~~~l~~Gs~V~V~G~l~~~~----~~-~~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-... ..+.+.|+.|+.|.|+|.|.... .+ +...+||.|++|.+|+..
T Consensus 54 ~~V~~fGk~AE~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 54 HRVAFFGRLAEIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEehHHHHHHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 555554332 12345689999999999998652 12 236799999999998754
No 240
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=26.04 E-value=1.3e+02 Score=29.74 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=35.2
Q ss_pred EEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCC----CCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPS----VQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~----~~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-.+.. ...+.|+.|+.|.|+|.|.... .+. ...+||.|++|.+++-.
T Consensus 45 i~v~awg~~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 45 CRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 5555533221 1235589999999999998652 122 35799999999998543
No 241
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=25.76 E-value=1.5e+02 Score=23.66 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=35.9
Q ss_pred ccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEE
Q 006717 121 PLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVE 176 (634)
Q Consensus 121 ~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~ 176 (634)
.+.|+|..++. -|..+.|+|.....-..|.+-++.+. . ...+..|+.|.+.
T Consensus 6 ~l~a~V~~v~~---~G~~vRlEl~~~~~~~~iEvel~~~~-~-~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRP---VGPEVRLELKRLDDGEPIEVELPRER-R-QLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEe---cCCeEEEEEEECCCCCEEEEEeCHhH-H-hcCCCCCCEEEEE
Confidence 46788999987 89999999965422236888887664 1 2235569988764
No 242
>COG3689 Predicted membrane protein [Function unknown]
Probab=25.73 E-value=4.3e+02 Score=28.24 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=30.1
Q ss_pred CCCCCCcEEEEEEEEecCCC--CCCceEEEEEeeeEEEecCC
Q 006717 165 KIRPIGTCLMVEGVLKQPSV--QGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 165 ~~l~~Gs~V~V~G~l~~~~~--~~~q~vEL~~~~i~vlg~~~ 204 (634)
..++..+.|.|+|++...-- .+++-.-|+|++++++-+.+
T Consensus 222 ~~y~ndtWltvkGtl~~e~~~~~~~~ipvi~v~sv~~I~kP~ 263 (271)
T COG3689 222 TDYKNDTWLTVKGTLSSEYLSDFKKRIPVIEVDSVEVIPKPA 263 (271)
T ss_pred ccCCCCceEEEEeEEEeeecCchhhcCcEEEeeeeeecCCCC
Confidence 34788999999999986521 12456778999999987664
No 243
>PRK07218 replication factor A; Provisional
Probab=25.30 E-value=4.4e+02 Score=29.94 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=48.7
Q ss_pred cccccceeeeccCCC-----CCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEE
Q 006717 118 NNVPLREKLEALVPK-----PPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVEL 192 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~-----~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL 192 (634)
..|.|.|||..+=.+ ...+.+.=..|-|.|+. |.+++-.+. ..+..|++|.|.|..+..- .+.+||
T Consensus 173 ~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~--Ir~tlW~~~----~~l~~Gd~v~I~na~v~e~---~G~~el 243 (423)
T PRK07218 173 RGVNVEARVLELEHREIDGRDGETTILSGVLADETGR--LPFTDWDPL----PEIEIGASIRIEDAYVREF---RGVPSV 243 (423)
T ss_pred CceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCce--EEEEEeccc----ccCCCCCEEEEeeeEEecc---CCeEEE
Confidence 458889999877220 00112333456666664 666554432 2478999999999887754 588999
Q ss_pred EEeeeEEEecC
Q 006717 193 KVEKILHIGTV 203 (634)
Q Consensus 193 ~~~~i~vlg~~ 203 (634)
.+.+-.-|...
T Consensus 244 nv~~~t~I~~~ 254 (423)
T PRK07218 244 NVSEFTTVEAL 254 (423)
T ss_pred EECCceEEEEC
Confidence 99855444443
No 244
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=23.40 E-value=70 Score=35.21 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.1
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|+|++|++||+|.+. ..|.-||+|+++|.-..+
T Consensus 99 ~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~ 132 (412)
T PRK00037 99 FKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 132 (412)
T ss_pred eEEEEEcCccccCCCC-CCcccceEEcCeeeeCCC
Confidence 4999999999999885 568899999999976544
No 245
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=23.30 E-value=32 Score=42.47 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=36.5
Q ss_pred eeeccchHHHHHHHHc-c-----cCceEEEccccccCcCC----CCCccccccccchhhcCC
Q 006717 373 TYLTVSGRLHLESYAC-A-----LGNVYSFGPRFRAEKKE----SSKHAAEMLMVETEIAFS 424 (634)
Q Consensus 373 ~yLtvSpQL~le~la~-g-----~~rVYeIgp~FRaE~s~----T~rHlpEFtmLE~E~af~ 424 (634)
++||.|+-...|-+.. | ..|+-..-||.|..+.+ |.||+.=|.||== .+|.
T Consensus 90 llft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~nDldnVG~t~rH~TfFEMlGn-~sFg 150 (902)
T TIGR03683 90 VYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTCFEMMAH-HAFN 150 (902)
T ss_pred eeEeecchhhhhHhhcCCCCCCCCCCceeccccccccccccccCCCCcchhhhhccc-eeeC
Confidence 6777777666666442 4 47888889999996543 7899999999843 4454
No 246
>PRK08402 replication factor A; Reviewed
Probab=23.08 E-value=3.3e+02 Score=30.16 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=49.6
Q ss_pred cccccceeeeccCCC-------CCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEE-EEecCCCCCCc
Q 006717 118 NNVPLREKLEALVPK-------PPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEG-VLKQPSVQGKH 188 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~-------~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G-~l~~~~~~~~q 188 (634)
..|.+.|||.++-.. ...|++.=+.|-|.|+. +.+++-.+.. .+...+..|++|.|.| .++..- .|
T Consensus 73 ~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~--ir~TlW~~~a~~~~~~l~~Gdvi~I~~a~V~e~~---~G 147 (355)
T PRK08402 73 RGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGR--ARVVLWDAKVAKYYNKINVGDVIKVIDAQVRESL---SG 147 (355)
T ss_pred ceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCe--EEEEEechhhhhhcccCCCCCEEEEECCEEeecC---CC
Confidence 578889999886220 11234555899999996 7777755432 2224589999999985 444322 46
Q ss_pred eEEEEEeeeE
Q 006717 189 AVELKVEKIL 198 (634)
Q Consensus 189 ~vEL~~~~i~ 198 (634)
.+||.+.+-.
T Consensus 148 ~~eLsvg~~s 157 (355)
T PRK08402 148 LPELHINFRA 157 (355)
T ss_pred cEEEEECCCc
Confidence 6699886543
No 247
>PRK06386 replication factor A; Reviewed
Probab=23.01 E-value=4.9e+02 Score=28.89 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=46.6
Q ss_pred cccccceeeeccCC-----CCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEE
Q 006717 118 NNVPLREKLEALVP-----KPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVEL 192 (634)
Q Consensus 118 ~~V~vrGRi~~~R~-----~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL 192 (634)
.-|.|.|||...=. +...|.+.=+.|-|.|+. |.++. +.+.+..|++|.|.+..+..- .+.+||
T Consensus 118 ~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGr--Ir~Tl------W~~~l~eGd~v~i~na~v~e~---~G~~el 186 (358)
T PRK06386 118 PYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTAR--VRISS------FGKPLEDNRFVRIENARVSQY---NGYIEI 186 (358)
T ss_pred CceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCe--EEEEE------ccccccCCCEEEEeeeEEEcc---CCeEEE
Confidence 45678888876522 001122333333344332 33332 334688999999999887654 688999
Q ss_pred EEeeeEEEecCC
Q 006717 193 KVEKILHIGTVD 204 (634)
Q Consensus 193 ~~~~i~vlg~~~ 204 (634)
.+.+...+.+.+
T Consensus 187 ~v~~~t~I~~~~ 198 (358)
T PRK06386 187 SVGNKSVIKEVE 198 (358)
T ss_pred EeCCeEEEEECC
Confidence 998877776654
No 248
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=22.98 E-value=40 Score=38.88 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=42.2
Q ss_pred ceeeeccchHHHHHH-HHc-c-----cC-ceEEEccccccCcCC---CCCccccccccchhhcCCCHHHHHHHHHHHHHH
Q 006717 371 RQTYLTVSGRLHLES-YAC-A-----LG-NVYSFGPRFRAEKKE---SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 371 ~~~yLtvSpQL~le~-la~-g-----~~-rVYeIgp~FRaE~s~---T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
+.++|+.-..-..=+ ++. . +. |+|++|+|||+|.+- +--.+-||+|.|.|.-.. .++.....++++..
T Consensus 255 ~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~ 333 (563)
T TIGR00418 255 REFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRL 333 (563)
T ss_pred ceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHH
Confidence 567777665444333 222 1 22 899999999999652 112678999999996544 45544444444433
No 249
>PLN02734 glycyl-tRNA synthetase
Probab=22.80 E-value=98 Score=37.12 Aligned_cols=47 Identities=28% Similarity=0.348 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006717 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLES 347 (634)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (634)
++.+.+++++++..|..||.+++.+..+.+|+..|+..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (684)
T PLN02734 9 LAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEK 55 (684)
T ss_pred HHHHHHHHHHhHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhhhhh
Confidence 66788999999999999999999999999999999998887777763
No 250
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=22.39 E-value=54 Score=34.47 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=38.7
Q ss_pred eEEEEEeecCCeEEechhhhHHhHHHHHHHHHH-cCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 545 VAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE-LGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 545 ~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~-~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
--.+|+.+ +|+||.- |-- +.. -|++ -.|-.+-+--|+|||.|++-|.+||-|+.
T Consensus 128 GlGWEVWl-dGMEvTQ-------FTY----FQQvGGie-------------c~pV~~EITYGlERlAmYiQ~vdnVydl~ 182 (298)
T COG0752 128 GLGWEVWL-DGMEVTQ-------FTY----FQQVGGLE-------------CKPVSGEITYGLERLAMYIQGVDNVYDLE 182 (298)
T ss_pred ccceeEEE-cCeeeee-------eeh----hhhhCCee-------------ccceeeeeehhHHHHHHHHhCccceeEEe
Confidence 45799999 7999852 111 112 2333 13556678889999999999999999986
Q ss_pred c
Q 006717 624 P 624 (634)
Q Consensus 624 ~ 624 (634)
.
T Consensus 183 W 183 (298)
T COG0752 183 W 183 (298)
T ss_pred e
Confidence 4
No 251
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=22.37 E-value=3.7e+02 Score=24.40 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=35.1
Q ss_pred ccccccceeeeccCCCCCCCce-EEEEE----EcCc---cceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCC
Q 006717 117 SNNVPLREKLEALVPKPPPPST-VFLQV----SDGS---CVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPS 183 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l-~Fl~l----~Dgs---~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~ 183 (634)
++.+.+.|+|....... .+.. ..+.+ ..+. ....+++.++++.. ..+..||.|.++|++...+
T Consensus 75 ~~~~~v~g~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~Gd~i~~~g~l~~~~ 145 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQID-GRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ---PRLQPGDRIRVRGKLKPPS 145 (176)
T ss_pred CceEEEEEEEccccccc-CceEEEEEEEEEeeccccccccceeeEEEeccccc---cccCCCCEEEEEEEEecCC
Confidence 55677888887775411 1122 22221 1111 11235555444321 1478999999999998765
No 252
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=22.31 E-value=6.5e+02 Score=23.55 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCCcccccccceeeeccCCCCCCCceEEEEE----EcCccceeEEEEEeCCC-CCCCCCCCCCcEEEEEEEEecCCCCCC
Q 006717 113 SAGISNNVPLREKLEALVPKPPPPSTVFLQV----SDGSCVASLQVVVESTL-VSPSKIRPIGTCLMVEGVLKQPSVQGK 187 (634)
Q Consensus 113 ~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l----~Dgs~~~~lQvV~~~~~-~~~~~~l~~Gs~V~V~G~l~~~~~~~~ 187 (634)
....+.+|++-||++..=. .-.++ .| .|+. -|+.|+... .++ ..+.|+.+.+-|.+...+ ..
T Consensus 17 ~~~~g~svR~~GrL~~yD~---~~~~a--~l~~~~~~~~----~~l~V~t~~l~~~--~~~~gslyq~iGEl~~~~--~~ 83 (118)
T PF15490_consen 17 FVPEGKSVRTFGRLQSYDV---ATSRA--TLTAQHESDQ----HSLKVDTKLLEPF--QARVGSLYQFIGELEHQP--QD 83 (118)
T ss_pred cccCCCeEEEEEEEEEEec---cCCEE--EEEeeccCCC----cEEEEEeeEcccc--ccCCCCEEEEEEEEEEEc--CC
Confidence 3445578999999998865 33443 44 4433 355555432 222 247999999999998763 14
Q ss_pred ceEEEEEeeeEEEec
Q 006717 188 HAVELKVEKILHIGT 202 (634)
Q Consensus 188 q~vEL~~~~i~vlg~ 202 (634)
+...|+|.=...+..
T Consensus 84 ~~~~L~ARV~r~VdG 98 (118)
T PF15490_consen 84 GGIVLKARVLRCVDG 98 (118)
T ss_pred CcEEEEEEEEEecCC
Confidence 556677665554433
No 253
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=21.54 E-value=1.1e+02 Score=36.72 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=25.5
Q ss_pred cccccccHHHHhhcCCC---CCCCCCcEEEEEEEEeecccCC
Q 006717 23 RYSNRVLLKTILESGDG---GLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 23 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
+|....+++++.++-+. +....++.|+|.|||.++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G 123 (659)
T PTZ00385 82 SFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG 123 (659)
T ss_pred cCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC
Confidence 44444567777664321 1112355799999999999987
No 254
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=21.03 E-value=98 Score=30.62 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCC-------------CHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS-------------QLEDAMKCADDYFKFL 440 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~-------------d~~dlm~l~E~Lik~l 440 (634)
|+||||+||..+.. +..|.+.+=.-++.. |+.|+-..+|.++..+
T Consensus 80 ~lFEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 80 RLFEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred eEEEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
No 255
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=21.01 E-value=38 Score=41.77 Aligned_cols=51 Identities=18% Similarity=0.349 Sum_probs=37.2
Q ss_pred eeeccchHHHHHHHHc-c-----cCceEEEccccccCcCC----CCCccccccccchhhcCC
Q 006717 373 TYLTVSGRLHLESYAC-A-----LGNVYSFGPRFRAEKKE----SSKHAAEMLMVETEIAFS 424 (634)
Q Consensus 373 ~yLtvSpQL~le~la~-g-----~~rVYeIgp~FRaE~s~----T~rHlpEFtmLE~E~af~ 424 (634)
+|||.|+-...|-+.. | ..|+-..-||.|..+.+ |.||+.=|.||=- .+|.
T Consensus 93 llft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~nDldnVG~t~rH~T~FEMlGn-~sFg 153 (900)
T PRK13902 93 VYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRLNDIDNVGRTGRHLTSFEMMAH-HAFN 153 (900)
T ss_pred eeeeecchhhhhHHhcCCCCCCCCCCceecccccchhhhhhccccCCchhhhhhccc-eeeC
Confidence 6777777776666543 4 47888999999996543 7899999999843 3443
No 256
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.95 E-value=2.4e+02 Score=23.73 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=18.8
Q ss_pred EEEEEE-cCccceeEEEEEeCCCCCCCCCCCCCcEEEEE
Q 006717 139 VFLQVS-DGSCVASLQVVVESTLVSPSKIRPIGTCLMVE 176 (634)
Q Consensus 139 ~Fl~l~-Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~ 176 (634)
+|+++. +| +...++.+.......++.|+.|.+.
T Consensus 20 ~~v~~g~~g-----v~Gfl~~~~~~~~~~~~~Gq~v~~~ 53 (74)
T cd05694 20 YILDIGIPG-----TTGFLPKKDAGNFSKLKVGQLLLCV 53 (74)
T ss_pred EEEEeCCCC-----cEEEEEHHHCCcccccCCCCEEEEE
Confidence 788883 33 4444554322211457888888765
No 257
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=20.86 E-value=1.9e+02 Score=27.92 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=35.1
Q ss_pred EEEEEeCCC-CCCCCCCCCCcEEEEEEEEecCC----CC-CCceEEEEEeeeEEEec
Q 006717 152 LQVVVESTL-VSPSKIRPIGTCLMVEGVLKQPS----VQ-GKHAVELKVEKILHIGT 202 (634)
Q Consensus 152 lQvV~~~~~-~~~~~~l~~Gs~V~V~G~l~~~~----~~-~~q~vEL~~~~i~vlg~ 202 (634)
+.|++-... ....+.|+.|+-|.|+|.|.... .+ ....+||.+++|.++..
T Consensus 56 ~~V~~wg~~Ae~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~ 112 (148)
T PRK08182 56 APVELWHRDAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPY 112 (148)
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCC
Confidence 566654332 12345689999999999998652 12 23678999999988753
No 258
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.18 E-value=1.2e+02 Score=25.44 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhCCcEEe
Q 006717 238 RIRSSLTHATHTFFQNHGFLYV 259 (634)
Q Consensus 238 riRs~l~~air~ff~~~gF~eV 259 (634)
|.|..|+..+|+||.+.|=+.|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 5689999999999999997654
No 259
>PLN02530 histidine-tRNA ligase
Probab=20.17 E-value=89 Score=35.70 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.8
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
|.|++|+|||.|... .-+.-||||+.+|.-..+
T Consensus 166 r~~y~g~vfR~e~~q-~gr~REf~Q~giEiiG~~ 198 (487)
T PLN02530 166 KWFAIGQCWRYERMT-RGRRREHYQWNMDIIGVP 198 (487)
T ss_pred EEEEEcCEEcCcCCC-CCCccceEEcCeeEeCCC
Confidence 889999999999874 446889999999986654
Done!