Query 006717
Match_columns 634
No_of_seqs 363 out of 1926
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:06:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m4p_A Ehasnrs, asparaginyl-tR 100.0 2E-106 5E-111 886.7 35.6 425 106-633 19-455 (456)
2 3nem_A Aspartyl-tRNA synthetas 100.0 7E-106 2E-110 877.7 40.5 391 136-633 32-437 (438)
3 2xgt_A Asparaginyl-tRNA synthe 100.0 6E-104 2E-108 863.0 35.8 397 137-633 29-434 (435)
4 3i7f_A Aspartyl-tRNA synthetas 100.0 1E-103 3E-108 876.7 35.1 436 92-633 34-547 (548)
5 1wyd_A Hypothetical aspartyl-t 100.0 1E-101 4E-106 842.9 39.0 390 137-633 33-428 (429)
6 1n9w_A Aspartyl-tRNA synthetas 100.0 5E-101 2E-105 836.8 35.6 383 136-633 29-421 (422)
7 1eov_A ASPRS, aspartyl-tRNA sy 100.0 7E-100 3E-104 840.5 37.0 438 93-633 8-486 (487)
8 1x54_A Asparaginyl-tRNA synthe 100.0 8E-100 3E-104 830.1 34.9 392 137-633 33-433 (434)
9 4ex5_A Lysine--tRNA ligase; st 100.0 6.8E-99 2E-103 836.3 33.3 403 117-630 86-527 (529)
10 3bju_A Lysyl-tRNA synthetase; 100.0 5.6E-98 2E-102 830.8 32.4 414 116-632 54-509 (521)
11 1e1o_A Lysyl-tRNA synthetase, 100.0 2.3E-97 8E-102 822.5 35.7 389 135-631 79-503 (504)
12 3a74_A Lysyl-tRNA synthetase; 100.0 1.5E-96 5E-101 814.6 32.4 388 135-630 71-492 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 1.1E-94 3.7E-99 812.8 37.9 386 136-633 32-556 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 1.1E-94 3.9E-99 814.1 32.2 406 136-633 31-562 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 3.4E-83 1.2E-87 720.0 31.3 376 139-630 40-570 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 1.9E-75 6.6E-80 620.8 25.9 283 227-629 27-344 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 3.4E-69 1.2E-73 561.8 26.2 279 222-633 1-292 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.8 1.3E-22 4.3E-27 210.4 3.1 167 186-437 23-203 (290)
19 12as_A Asparagine synthetase; 99.8 2.5E-19 8.4E-24 185.6 20.6 228 370-624 64-315 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.7 8.2E-17 2.8E-21 167.1 8.9 58 545-625 218-276 (288)
21 1b7y_A Phers, protein (phenyla 99.3 3.2E-11 1.1E-15 128.4 16.3 65 374-440 176-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.2 1.1E-10 3.7E-15 121.4 13.0 70 371-441 108-184 (294)
23 3pco_A Phenylalanyl-tRNA synth 98.9 5E-09 1.7E-13 110.5 11.3 67 372-441 163-235 (327)
24 3l4g_A Phenylalanyl-tRNA synth 98.6 3.4E-07 1.2E-11 101.4 15.7 43 392-435 349-393 (508)
25 2i4l_A Proline-tRNA ligase; al 98.1 8.5E-06 2.9E-10 89.3 9.7 36 232-267 62-97 (458)
26 1qe0_A Histidyl-tRNA synthetas 98.0 5.6E-06 1.9E-10 89.0 6.0 35 234-268 13-47 (420)
27 1evl_A Threonyl-tRNA synthetas 97.9 1.1E-05 3.6E-10 86.8 7.5 36 233-268 26-61 (401)
28 2dq3_A Seryl-tRNA synthetase; 97.9 1.8E-05 6.3E-10 86.1 8.8 36 233-268 168-203 (425)
29 1hc7_A Prolyl-tRNA synthetase; 97.9 3.4E-05 1.1E-09 85.2 10.8 121 233-437 40-179 (477)
30 2j3l_A Prolyl-tRNA synthetase; 97.8 5.2E-05 1.8E-09 85.0 10.8 37 232-268 42-78 (572)
31 1z7m_A ATP phosphoribosyltrans 97.8 0.00012 4E-09 77.5 11.8 35 233-267 32-66 (344)
32 3uh0_A Threonyl-tRNA synthetas 97.8 4.8E-05 1.7E-09 83.6 8.9 35 234-268 61-96 (460)
33 1nyr_A Threonyl-tRNA synthetas 97.8 4.3E-05 1.5E-09 87.2 8.6 36 233-268 267-302 (645)
34 1nj8_A Proline-tRNA synthetase 97.7 8.4E-05 2.9E-09 81.6 10.6 122 234-438 35-176 (459)
35 1wu7_A Histidyl-tRNA synthetas 97.7 0.00011 3.7E-09 79.6 11.1 35 234-268 17-51 (434)
36 1nj1_A PROR, proline-tRNA synt 97.7 7.3E-05 2.5E-09 83.0 8.9 123 233-439 67-209 (501)
37 4hvc_A Bifunctional glutamate/ 97.7 0.00011 3.7E-09 82.0 10.1 49 392-440 150-200 (519)
38 1h4v_B Histidyl-tRNA synthetas 97.7 0.00011 3.8E-09 79.0 9.8 35 234-268 14-48 (421)
39 2dq0_A Seryl-tRNA synthetase; 97.7 5.7E-05 1.9E-09 83.0 7.5 118 233-441 189-328 (455)
40 4e51_A Histidine--tRNA ligase; 97.7 9.6E-05 3.3E-09 81.3 9.2 35 234-268 43-77 (467)
41 1htt_A Histidyl-tRNA synthetas 97.6 0.00012 4.3E-09 78.7 9.8 35 234-268 15-49 (423)
42 3net_A Histidyl-tRNA synthetas 97.6 0.00012 4E-09 80.5 8.7 47 233-279 22-74 (465)
43 3qne_A Seryl-tRNA synthetase, 97.6 9.2E-05 3.2E-09 81.8 7.7 118 234-440 182-323 (485)
44 1ses_A Seryl-tRNA synthetase; 97.5 0.00025 8.5E-09 77.1 10.3 36 233-268 162-197 (421)
45 3od1_A ATP phosphoribosyltrans 97.5 0.00035 1.2E-08 75.4 11.0 36 233-268 20-55 (400)
46 3ial_A Prolyl-tRNA synthetase; 97.5 0.00016 5.5E-09 80.6 8.6 125 233-440 51-194 (518)
47 1wle_A Seryl-tRNA synthetase; 97.5 0.00033 1.1E-08 77.8 10.7 122 233-441 215-359 (501)
48 1qf6_A THRRS, threonyl-tRNA sy 97.5 0.00014 4.8E-09 83.0 7.7 36 233-268 267-302 (642)
49 3rac_A Histidine-tRNA ligase; 97.5 0.00023 7.9E-09 76.2 8.9 33 235-267 35-67 (373)
50 3lss_A Seryl-tRNA synthetase; 97.5 0.00013 4.4E-09 80.6 7.0 35 234-268 205-239 (484)
51 3cmq_A Phenylalanyl-tRNA synth 97.5 0.00083 2.8E-08 73.0 13.1 55 368-423 109-164 (415)
52 3err_A Fusion protein of micro 97.4 0.00036 1.2E-08 78.1 9.7 36 233-268 271-306 (536)
53 2du3_A O-phosphoseryl-tRNA syn 97.4 0.00025 8.5E-09 79.1 8.1 46 392-437 207-254 (534)
54 3lc0_A Histidyl-tRNA synthetas 97.4 0.00051 1.7E-08 75.4 10.1 35 234-268 40-74 (456)
55 3vbb_A Seryl-tRNA synthetase, 97.3 0.0004 1.4E-08 77.3 8.9 35 234-268 198-232 (522)
56 3a32_A Probable threonyl-tRNA 97.3 0.00035 1.2E-08 76.8 8.3 35 234-268 46-80 (471)
57 2cja_A Seryl-tRNA synthetase; 97.2 0.00027 9.3E-09 78.8 5.6 54 392-446 346-402 (522)
58 4g84_A Histidine--tRNA ligase, 97.1 0.0018 6.1E-08 70.3 10.6 36 232-267 23-58 (464)
59 1ati_A Glycyl-tRNA synthetase; 96.9 0.0016 5.5E-08 72.3 8.8 70 370-442 180-262 (505)
60 4g85_A Histidine-tRNA ligase, 96.9 0.0024 8.3E-08 70.7 9.4 36 232-267 76-111 (517)
61 3mf2_A BLL0957 protein; aminoa 96.4 0.004 1.4E-07 65.9 6.7 50 392-442 170-219 (346)
62 3kdf_D Replication protein A 3 96.3 0.034 1.2E-06 50.7 11.6 59 137-201 48-110 (132)
63 4gop_B Putative uncharacterize 96.2 0.064 2.2E-06 49.1 12.9 59 137-201 53-115 (136)
64 1g5h_A Mitochondrial DNA polym 96.1 0.022 7.4E-07 62.5 10.6 52 392-444 165-221 (454)
65 1usy_A ATP phosphoribosyltrans 95.7 0.02 6.7E-07 58.5 8.0 31 391-425 71-101 (275)
66 3kf6_A Protein STN1; OB fold, 95.2 0.037 1.3E-06 52.5 7.3 77 118-202 48-128 (159)
67 2zt5_A Glycyl-tRNA synthetase; 95.2 0.015 5.2E-07 66.9 5.4 34 234-267 98-132 (693)
68 3dm3_A Replication factor A; p 94.9 0.072 2.5E-06 46.9 7.7 90 106-204 5-101 (105)
69 3ikl_A DNA polymerase subunit 94.6 0.073 2.5E-06 58.4 8.6 50 392-443 175-230 (459)
70 2pi2_A Replication protein A 3 94.1 0.32 1.1E-05 49.6 11.4 60 137-202 88-151 (270)
71 2k50_A Replication factor A re 93.7 0.16 5.6E-06 44.6 7.5 83 117-203 16-105 (115)
72 1d2d_A TRNA synthetase, tRNA l 93.5 0.057 2E-06 43.1 3.7 43 305-347 3-45 (59)
73 1fyj_A Multifunctional aminoac 93.3 0.1 3.5E-06 41.1 4.8 44 302-345 3-46 (57)
74 3e0e_A Replication protein A; 93.1 0.38 1.3E-05 41.5 8.6 78 118-203 12-96 (97)
75 3kf8_A Protein STN1; OB fold; 92.9 0.52 1.8E-05 46.9 10.4 86 117-203 85-185 (220)
76 1sr3_A APO-CCME; OB fold, beta 91.7 0.8 2.8E-05 42.3 9.4 96 97-209 2-106 (136)
77 2djv_A Methionyl-tRNA syntheta 91.3 0.27 9.1E-06 41.4 5.2 53 301-353 15-67 (79)
78 2odr_B Phosphoseryl-tRNA synth 90.8 0.12 4.1E-06 58.6 3.4 69 372-440 199-276 (648)
79 2odr_A Phosphoseryl-tRNA synth 90.7 0.12 4.2E-06 58.6 3.4 69 372-440 199-276 (665)
80 2du7_A O-phosphoseryl-tRNA syn 90.7 0.12 4.3E-06 57.7 3.4 46 392-438 219-267 (549)
81 2odr_D Phosphoseryl-tRNA synth 90.6 0.13 4.3E-06 58.6 3.4 69 372-440 199-276 (685)
82 2odr_C Phosphoseryl-tRNA synth 90.4 0.13 4.6E-06 58.5 3.4 69 372-440 199-276 (701)
83 1j6q_A Cytochrome C maturation 90.1 1.4 4.8E-05 40.7 9.4 97 96-209 5-111 (136)
84 2kbn_A Conserved protein; nucl 89.9 2.5 8.5E-05 37.1 10.6 80 117-204 15-95 (109)
85 2rhq_B Phenylalanyl-tRNA synth 89.3 1.2 4E-05 52.1 10.2 47 392-440 573-632 (795)
86 1nnx_A Protein YGIW; structura 87.8 1.3 4.3E-05 39.5 7.1 74 115-201 35-108 (109)
87 3l4g_B Phenylalanyl-tRNA synth 87.6 1.6 5.6E-05 49.1 9.7 46 392-438 473-520 (589)
88 3au7_A TIAS, putative uncharac 87.1 1.2 4E-05 48.1 7.7 75 117-203 284-362 (402)
89 1o7i_A SSB, SSO2364, single st 86.1 3.5 0.00012 36.5 9.2 82 119-209 14-102 (119)
90 3ig2_A Phenylalanyl-tRNA synth 84.7 1.1 3.9E-05 43.6 5.8 27 242-268 8-34 (213)
91 1ynx_A Replication factor-A pr 84.4 0.59 2E-05 41.4 3.2 96 106-204 4-110 (114)
92 2zt5_A Glycyl-tRNA synthetase; 81.0 0.41 1.4E-05 55.2 1.0 49 301-349 10-58 (693)
93 3ica_A Phenylalanyl-tRNA synth 80.7 2.9 9.8E-05 40.8 6.8 27 241-267 7-33 (213)
94 2k75_A Uncharacterized protein 78.0 13 0.00043 32.4 9.4 81 119-212 15-101 (106)
95 3fhw_A Primosomal replication 77.4 2.5 8.4E-05 37.9 4.7 57 152-210 49-105 (115)
96 3qtc_A Pyrrolysyl-tRNA synthet 73.5 1.7 5.9E-05 44.3 3.0 54 546-622 222-276 (290)
97 1b7y_B Phers, protein (phenyla 71.8 9 0.00031 44.7 8.8 29 240-268 491-519 (785)
98 2hpi_A DNA polymerase III alph 70.8 5.2 0.00018 48.8 6.7 59 137-202 1064-1123(1220)
99 3mxn_B RECQ-mediated genome in 69.1 14 0.00046 34.6 7.6 72 118-202 59-130 (150)
100 3m4p_A Ehasnrs, asparaginyl-tR 68.0 2 6.8E-05 47.0 2.1 28 27-61 19-46 (456)
101 1eov_A ASPRS, aspartyl-tRNA sy 66.6 2.6 9E-05 46.4 2.8 30 27-61 23-52 (487)
102 2fxq_A Single-strand binding p 64.0 11 0.00039 37.8 6.7 81 118-202 129-229 (264)
103 1txy_A Primosomal replication 63.2 9.8 0.00034 32.9 5.3 50 152-202 50-102 (104)
104 3k8a_A Putative primosomal rep 62.5 6.2 0.00021 34.4 3.8 47 152-200 55-101 (103)
105 3kdf_A Replication protein A 1 61.6 17 0.00057 32.7 6.6 73 112-202 17-89 (121)
106 4gop_C Putative uncharacterize 61.1 8.3 0.00028 41.6 5.4 96 106-204 3-109 (444)
107 1se8_A Single-strand binding p 59.2 21 0.00071 36.8 7.7 83 118-202 130-233 (301)
108 1z7m_A ATP phosphoribosyltrans 58.6 5.9 0.0002 41.4 3.6 34 391-425 118-151 (344)
109 3bju_A Lysyl-tRNA synthetase; 57.8 7.1 0.00024 43.4 4.2 38 24-61 31-71 (521)
110 1jmc_A Protein (replication pr 56.7 6.6 0.00022 38.6 3.4 96 106-204 8-114 (246)
111 3i7f_A Aspartyl-tRNA synthetas 56.5 4.8 0.00016 45.1 2.5 29 27-61 50-78 (548)
112 2du7_A O-phosphoseryl-tRNA syn 54.1 6.9 0.00023 43.8 3.3 25 598-622 326-350 (549)
113 3od1_A ATP phosphoribosyltrans 52.4 6.3 0.00022 42.2 2.6 33 392-425 105-137 (400)
114 2odr_B Phosphoseryl-tRNA synth 49.4 8.1 0.00028 43.9 2.9 25 598-622 333-357 (648)
115 3lc0_A Histidyl-tRNA synthetas 48.8 5 0.00017 43.7 1.1 34 391-425 124-157 (456)
116 2odr_A Phosphoseryl-tRNA synth 48.8 8.4 0.00029 43.9 2.9 25 598-622 333-357 (665)
117 2odr_D Phosphoseryl-tRNA synth 48.6 8.5 0.00029 43.9 2.9 25 598-622 333-357 (685)
118 3net_A Histidyl-tRNA synthetas 47.7 7.3 0.00025 42.4 2.2 33 392-425 122-154 (465)
119 2odr_C Phosphoseryl-tRNA synth 47.5 9.1 0.00031 43.8 2.9 25 598-622 333-357 (701)
120 4gop_A Putative uncharacterize 46.0 23 0.00078 31.4 4.8 72 113-198 14-85 (114)
121 1wjj_A Hypothetical protein F2 45.5 38 0.0013 31.4 6.3 92 100-203 13-120 (145)
122 2kct_A Cytochrome C-type bioge 41.6 1.7E+02 0.0057 25.1 11.7 55 137-205 30-87 (94)
123 1j5w_A Glycyl-tRNA synthetase 38.6 15 0.00052 37.4 2.6 56 544-623 135-190 (298)
124 3rf1_A Glycyl-tRNA synthetase 38.3 16 0.00055 37.4 2.8 29 596-624 175-203 (311)
125 2pi2_E Replication protein A 1 37.2 72 0.0025 29.4 6.8 73 112-202 38-110 (142)
126 3rac_A Histidine-tRNA ligase; 36.6 15 0.00052 38.8 2.4 34 391-425 118-157 (373)
127 4g84_A Histidine--tRNA ligase, 36.4 12 0.00043 39.9 1.8 32 392-423 106-138 (464)
128 4e51_A Histidine--tRNA ligase; 35.3 16 0.00056 39.7 2.5 34 391-425 131-164 (467)
129 1h4v_B Histidyl-tRNA synthetas 35.1 21 0.00072 37.7 3.3 34 391-425 102-135 (421)
130 2j3l_A Prolyl-tRNA synthetase; 34.6 12 0.00041 41.6 1.3 67 370-437 101-178 (572)
131 2fxq_A Single-strand binding p 33.0 60 0.002 32.4 6.1 52 152-203 54-110 (264)
132 2i4l_A Proline-tRNA ligase; al 32.9 13 0.00045 40.2 1.3 67 370-436 121-197 (458)
133 3vdy_A SSB, single-stranded DN 32.6 49 0.0017 28.8 4.7 52 152-203 52-109 (116)
134 4g85_A Histidine-tRNA ligase, 32.5 19 0.00064 39.5 2.4 33 392-424 159-192 (517)
135 1wu7_A Histidyl-tRNA synthetas 32.3 19 0.00065 38.4 2.3 34 391-425 100-133 (434)
136 1v1q_A Primosomal replication 32.2 1.1E+02 0.0036 27.9 7.0 52 152-203 67-120 (134)
137 1htt_A Histidyl-tRNA synthetas 30.5 18 0.00061 38.3 1.8 34 391-425 102-135 (423)
138 2ztg_A Alanyl-tRNA synthetase; 30.4 12 0.00042 43.3 0.4 28 598-626 239-266 (739)
139 1qe0_A Histidyl-tRNA synthetas 29.6 15 0.00052 38.8 1.0 34 391-425 102-135 (420)
140 3ull_A DNA binding protein; DN 28.6 58 0.002 29.1 4.6 52 152-203 69-127 (132)
141 1yfs_A Alanyl-tRNA synthetase; 28.0 25 0.00086 38.4 2.4 48 390-438 59-116 (465)
142 3tqy_A Single-stranded DNA-bin 27.5 62 0.0021 30.0 4.7 52 152-203 58-115 (158)
143 3en2_A Probable primosomal rep 27.3 52 0.0018 28.5 3.9 47 152-199 50-96 (101)
144 2vw9_A Single-stranded DNA bin 27.2 82 0.0028 28.3 5.4 52 152-203 51-108 (134)
145 1z9f_A Single-strand binding p 25.1 80 0.0027 29.2 5.0 52 152-203 65-122 (153)
146 2zze_A Alanyl-tRNA synthetase; 24.7 18 0.00063 41.9 0.6 28 598-626 245-272 (752)
147 1r6t_A Tryptophanyl-tRNA synth 24.6 65 0.0022 35.3 4.9 45 301-345 9-53 (477)
148 3hy0_A Alanyl-tRNA synthetase; 24.3 25 0.00087 38.2 1.5 48 389-437 57-114 (441)
149 2b29_A Replication protein A 7 22.0 1.6E+02 0.0054 26.2 6.1 58 141-202 47-107 (123)
150 1x59_A Histidyl-tRNA synthetas 20.0 1.5E+02 0.005 24.0 5.0 43 301-343 11-53 (73)
No 1
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.6e-106 Score=886.71 Aligned_cols=425 Identities=23% Similarity=0.392 Sum_probs=366.8
Q ss_pred eeeecCCCCCcccccccceeeeccCCCCCCC-ceEEEEEEcCccceeEEEEEeCC-CCCC--CCCCCCCcEEEEEEEEec
Q 006717 106 IIRVLGGSAGISNNVPLREKLEALVPKPPPP-STVFLQVSDGSCVASLQVVVEST-LVSP--SKIRPIGTCLMVEGVLKQ 181 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~R~~~~~G-~l~Fl~l~Dgs~~~~lQvV~~~~-~~~~--~~~l~~Gs~V~V~G~l~~ 181 (634)
+..|.++....+++|+|+|||+++|. +| +++|++||||||. ||||++.+ .... ...++.||+|.|+|+|++
T Consensus 19 ~~~i~~~~~~~g~~V~v~Gwv~~~R~---~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~ 93 (456)
T 3m4p_A 19 VCNIRDAAGLEGKLVTFKGWAYHIRK---ARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKLLTRECSLEITGRLNA 93 (456)
T ss_dssp CEECCSTTCCCSSEEEEEEEEEEEEC---CSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTTCCTTCEEEEEEEEEC
T ss_pred EEEhhhhhhcCCCEEEEEEEEEEEec---CCCceEEEEEEeCCcc--EEEEEecccchhhHHhhcCCCccEEEEEeEEEe
Confidence 45566776677889999999999998 86 6999999999996 99999873 2221 246899999999999998
Q ss_pred CCCCC--C-----ceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhC
Q 006717 182 PSVQG--K-----HAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNH 254 (634)
Q Consensus 182 ~~~~~--~-----q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~ 254 (634)
++.+. . |++||+|+++++|++|.....+...+.++.|+|+++||||+|++.++++||+||.|++++|+||+++
T Consensus 94 ~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~iR~ff~~~ 173 (456)
T 3m4p_A 94 YAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDN 173 (456)
T ss_dssp CCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 87421 2 8899999999999999521111223567899999999999999999999999999999999999999
Q ss_pred CcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHh
Q 006717 255 GFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQD 334 (634)
Q Consensus 255 gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (634)
||+||+||+|++++||||+++|.+
T Consensus 174 gF~EVeTPiL~~s~~eGg~~~f~~-------------------------------------------------------- 197 (456)
T 3m4p_A 174 HFTEIQPPTIVKTQCEGGSTLFKL-------------------------------------------------------- 197 (456)
T ss_dssp TCEECCCCSEEC------CCCCEE--------------------------------------------------------
T ss_pred CCEEEeCCeeecCCCCCccccccc--------------------------------------------------------
Confidence 999999999999999999998854
Q ss_pred hhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccc
Q 006717 335 LRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEM 414 (634)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEF 414 (634)
+|||+++||+||||||||+|++|++||||||||||||+++|.||||||
T Consensus 198 --------------------------------~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~pEF 245 (456)
T 3m4p_A 198 --------------------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEY 245 (456)
T ss_dssp --------------------------------EETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCSEE
T ss_pred --------------------------------cccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchHHH
Confidence 689999999999999999988899999999999999999999999999
Q ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccc
Q 006717 415 LMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKI 494 (634)
Q Consensus 415 tmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~ 494 (634)
|||||||+|+|++|+|+++|+||+++++.+++++...+..++..+ ..+..||+||||.||+++|++.+...
T Consensus 246 tmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~---------~~~~~pf~rity~eAi~~l~~~g~~~ 316 (456)
T 3m4p_A 246 LHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHL---------KLPTRPFKRMTYADAIKYCNDHGILN 316 (456)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC---------CCCCSSCEEEEHHHHHHHHHHHTCCS
T ss_pred HHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCccc---------ccCCCCCeEeeHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999988754443332211 12467999999999999998764211
Q ss_pred cccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccC-CCCCceEEEEEeecCCeEEechhhhHHhHHHHHH
Q 006717 495 FETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNT 573 (634)
Q Consensus 495 f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~-~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~ 573 (634)
......||.+|+.++|++|.+.+ ++|+||+|||++++||||+.+ +|+++++|||||+|+.+||+||+||++++++|.+
T Consensus 317 ~~~~~~~g~~l~~~~e~~l~~~~-~~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~ 395 (456)
T 3m4p_A 317 KDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMG 395 (456)
T ss_dssp SSSCCCTTCCCCHHHHHHHHHHH-TSCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHH
T ss_pred cccCcchHHHHHHHHHHHHHHHh-CceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEccceeecCCHHHHHH
Confidence 11346799999999999998864 899999999999999998765 4568899999999744799999999999999999
Q ss_pred HHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 574 RIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 574 ~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
++++.|++++.|+|||++++||+|||||||||||||+|++||++||||||+|||+++||.
T Consensus 396 r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 396 AYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455 (456)
T ss_dssp HHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999995
No 2
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=7.1e-106 Score=877.72 Aligned_cols=391 Identities=27% Similarity=0.475 Sum_probs=358.0
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCC-----CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVS-----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPL 210 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl 210 (634)
|+++|++|+||||. ||||++.+..+ ..+.|+.||+|.|+|+|++++ ..+|++||+|+++++||+|. .+||+
T Consensus 32 g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~-~~~~~~el~~~~i~vl~~~~-~~lP~ 107 (438)
T 3nem_A 32 GGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP-KAKLGFEILPEKIVVLNRAE-TPLPL 107 (438)
T ss_dssp TTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT-TSTTSEEEEEEEEEEEECBC-SSCSS
T ss_pred CCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC-CCCCcEEEEEEEEEEEecCC-CCCCC
Confidence 38999999999997 99999876422 235699999999999999987 45589999999999999996 47999
Q ss_pred CCCC---CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeecccccccc
Q 006717 211 SRKR---LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREK 287 (634)
Q Consensus 211 ~kk~---~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~ 287 (634)
+.+. ++.|+|+++||||+|++.++++||+||.|++++|+||.++||+||+||+|++++||||+++|.+
T Consensus 108 ~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~--------- 178 (438)
T 3nem_A 108 DPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM--------- 178 (438)
T ss_dssp CTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEE---------
T ss_pred CccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeE---------
Confidence 8665 7899999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCccccccc
Q 006717 288 EGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSED 367 (634)
Q Consensus 288 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (634)
+
T Consensus 179 -------------------------------------------------------------------------------~ 179 (438)
T 3nem_A 179 -------------------------------------------------------------------------------K 179 (438)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 4
Q ss_pred ccCceeeeccchHHHHHHHH-cccCceEEEccccccCcCCCCCccccccccchhhcCCC-HHHHHHHHHHHHHHHHHHHH
Q 006717 368 FFSRQTYLTVSGRLHLESYA-CALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ-LEDAMKCADDYFKFLCKWIL 445 (634)
Q Consensus 368 ffg~~~yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d-~~dlm~l~E~Lik~l~~~vl 445 (634)
||++++||+||||||||+|+ +|++||||||||||||+++|.|||||||||||||+|+| ++|+|+++|+||+++++.++
T Consensus 180 ~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~ 259 (438)
T 3nem_A 180 YFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVR 259 (438)
T ss_dssp ETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999965 79999999999999999999999999999999999999 99999999999999999999
Q ss_pred hhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhC----Ccc
Q 006717 446 EDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIY----KRP 521 (634)
Q Consensus 446 ~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~----~~P 521 (634)
+++..++++++..++ .++.||+||||.||+++|++.+ ..++||.|+++++|++|++.+. .+|
T Consensus 260 ~~~~~~l~~~~~~l~---------~~~~pf~rity~eai~~l~~~g-----~~~~~~~dl~~~~e~~l~~~~~~~~~~~p 325 (438)
T 3nem_A 260 EHNAKELDILNFELE---------EPKLPFPRVSYDKALEILGDLG-----KEIPWGEDIDTEGERLLGKYMMENENAPL 325 (438)
T ss_dssp HHCHHHHHHTTCCCC---------CCCSSCCEEEHHHHHHHHHHTT-----CCCCTTSCCCHHHHHHHHHHHHHHHCCSE
T ss_pred hhhhhhHhhcccccc---------cCCCCceEEEHHHHHHHHHHcC-----CCCCCCCCCCcHHHHHHHHHhhhhcCCCC
Confidence 999888887765431 2467999999999999998763 2467999999999999887653 789
Q ss_pred EEEEeCCCCCCCCccccCC-CCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcc
Q 006717 522 VIVYNYPKAVKPFYVRLND-DGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHS 600 (634)
Q Consensus 522 vfVtdyP~~~kPFy~~~~~-d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhg 600 (634)
+||+|||++++||||+.++ |+++++|||||+| |+||+||++|+++++.|.+++++.|++++.|+|||+|++|||||||
T Consensus 326 ~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~-G~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~ 404 (438)
T 3nem_A 326 YFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYR-GVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHG 404 (438)
T ss_dssp EEEESCBGGGSCTTBCBCTTSTTBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEE
T ss_pred EEEECCchhhCccccccCCCCCCceEEEEEEEC-CEEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCce
Confidence 9999999999999988664 5689999999995 7999999999999999999999999999999999999999999999
Q ss_pred eeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 601 GFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 601 GfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
|||||||||+||+||.+||||||+|||+++||.
T Consensus 405 G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~ 437 (438)
T 3nem_A 405 GFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437 (438)
T ss_dssp EEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCC
T ss_pred EEEEhHHHHHHHHhCCCcHHHcccCCCCccCCC
Confidence 999999999999999999999999999999985
No 3
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=5.9e-104 Score=862.98 Aligned_cols=397 Identities=26% Similarity=0.468 Sum_probs=345.5
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCC-C-CCCCCCCcEEEEEEEEecCCCC--CCceEEEEEeeeEEEecCCC-CCCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVS-P-SKIRPIGTCLMVEGVLKQPSVQ--GKHAVELKVEKILHIGTVDH-DKYPLS 211 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~-~-~~~l~~Gs~V~V~G~l~~~~~~--~~q~vEL~~~~i~vlg~~~~-~~yPl~ 211 (634)
+++|++|+||||. ||||++.+... + ...++.||+|.|+|+|+++|.+ ++|++||+|+++++|+++.+ ..+|++
T Consensus 29 ~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~ 106 (435)
T 2xgt_A 29 SLMFFILRDGTGF--LQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVL 106 (435)
T ss_dssp SEEEEEEECSSCE--EEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TTEEEEEEEEEEEECCCTTHHHHHC
T ss_pred CcEEEEEEECCce--EEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEEEEEeecCCCccccccc
Confidence 7999999999997 99999754321 1 1248999999999999997743 35899999999999998632 247888
Q ss_pred CCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCC
Q 006717 212 RKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPK 291 (634)
Q Consensus 212 kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~ 291 (634)
++.++.|+|+++||||+|++.++++||+||.|++++|+||+++||+||+||+|++++||||+++|.+
T Consensus 107 ~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~------------- 173 (435)
T 2xgt_A 107 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL------------- 173 (435)
T ss_dssp C--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEE-------------
T ss_pred ccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceee-------------
Confidence 8889999999999999999999999999999999999999999999999999999999999999864
Q ss_pred cccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCc
Q 006717 292 TAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSR 371 (634)
Q Consensus 292 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~ 371 (634)
+|||+
T Consensus 174 ---------------------------------------------------------------------------~~~g~ 178 (435)
T 2xgt_A 174 ---------------------------------------------------------------------------DYFGE 178 (435)
T ss_dssp ---------------------------------------------------------------------------EETTE
T ss_pred ---------------------------------------------------------------------------ccCCc
Confidence 57999
Q ss_pred eeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccc
Q 006717 372 QTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKD 451 (634)
Q Consensus 372 ~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~d 451 (634)
++||+||||||||++++|++||||||||||||+++|.|||||||||||||+|+|++|+|+++|+||+++++.+++++..+
T Consensus 179 ~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~ 258 (435)
T 2xgt_A 179 QSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAK 258 (435)
T ss_dssp EEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred ccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999878999999999999999999999999999999999999999999999999999999998765321
Q ss_pred --hhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhccc-ccccccccccccChHHHHhHHhhhCCccEEEEeCC
Q 006717 452 --LEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEK-IFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYP 528 (634)
Q Consensus 452 --l~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~-~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP 528 (634)
++.++..+ .....||+||||.||++++++.... .......||.++..++|++|.+.+ .+|+||+|||
T Consensus 259 ~~~~~~~~~~---------~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~~p~fv~d~P 328 (435)
T 2xgt_A 259 KLLEHINPKF---------QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFP 328 (435)
T ss_dssp HHHHHHSTTC---------CCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-TSCEEEECCB
T ss_pred hhhhhccccc---------cccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-CCcEEEECCC
Confidence 22211111 0124699999999999998765221 111236799999999999998765 7899999999
Q ss_pred CCCCCCccccCC-CCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHH
Q 006717 529 KAVKPFYVRLND-DGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFD 607 (634)
Q Consensus 529 ~~~kPFy~~~~~-d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiE 607 (634)
.+++||||+.++ |+.+++|||||+||.+||+|||+|+|++++|.+++++.|++++.|+|||+|++||+|||||||||||
T Consensus 329 ~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiD 408 (435)
T 2xgt_A 329 SEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLE 408 (435)
T ss_dssp GGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHH
T ss_pred hhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHH
Confidence 999999988764 5678999999996337999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 608 LMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 608 RLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||+|++||.+||||||+|||++++|.
T Consensus 409 RLvmll~g~~~Irdvi~FPr~~~~~~ 434 (435)
T 2xgt_A 409 RFICWLTNTNHIRDVCLYPRFVGRCV 434 (435)
T ss_dssp HHHHHHHTCSCGGGGSSSCCBTTBCC
T ss_pred HHHHHHcCCCcHHhEecccCCcCCCC
Confidence 99999999999999999999999985
No 4
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=9.6e-104 Score=876.68 Aligned_cols=436 Identities=22% Similarity=0.354 Sum_probs=369.2
Q ss_pred hhhhhhcc--cccceeeeeecCCCC-CcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCC-C-----
Q 006717 92 CVEILQSR--IPFFRTIIRVLGGSA-GISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-S----- 162 (634)
Q Consensus 92 ~~~~~qs~--~~~fr~~~~v~~~~~-~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~----- 162 (634)
-.||+||+ .+..+.+..+.++.. ..+++|+|+|||+++|. +|+++|++||||++. ||||++.+.. .
T Consensus 34 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~---~gkl~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~ 108 (548)
T 3i7f_A 34 VMPMHQSQPCYKTGLKYTEIEELVPAMAEKTVTIRARVQAVRG---KGNMVFLFLRKGIYT--CQALVMKSETISKEFVQ 108 (548)
T ss_dssp ECCCCSSCGGGCCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEE---CSSEEEEEEEETTEE--EEEEEECSSSSCHHHHH
T ss_pred cCccccccccccCCCceEEhhhcchhcCCCEEEEEEEEEEEec---CCCeEEEEEEECCee--EEEEEECCCccCHHHHH
Confidence 46889999 678888888888874 45689999999999999 999999999999985 9999986321 1
Q ss_pred CCCCCCCCcEEEEEEEEecCCCC----CCceEEEEEeeeEEEecCCCCCCCCCCC-------------------------
Q 006717 163 PSKIRPIGTCLMVEGVLKQPSVQ----GKHAVELKVEKILHIGTVDHDKYPLSRK------------------------- 213 (634)
Q Consensus 163 ~~~~l~~Gs~V~V~G~l~~~~~~----~~q~vEL~~~~i~vlg~~~~~~yPl~kk------------------------- 213 (634)
+.+.|+.||+|.|+|+|++++.. ++|++||+|++|.+|++|. .+||++.+
T Consensus 109 ~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 187 (548)
T 3i7f_A 109 FCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAE-YPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAK 187 (548)
T ss_dssp HHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCC-BSCSSCSGGGSCCHHHHHHHHHHTTCC------
T ss_pred HHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCC-CCCCCCchhcccccccccccccccccccccccc
Confidence 23579999999999999998642 3589999999999999996 47898731
Q ss_pred ---------------------------------CCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEee
Q 006717 214 ---------------------------------RLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQ 260 (634)
Q Consensus 214 ---------------------------------~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~ 260 (634)
.++.|+|+++||||+|++.++++||+||.|++++|+||.++||+||+
T Consensus 188 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVe 267 (548)
T 3i7f_A 188 FLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIH 267 (548)
T ss_dssp -------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred ccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEe
Confidence 34789999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 006717 261 VPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNE 340 (634)
Q Consensus 261 TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (634)
||+|++++||||+++|.|
T Consensus 268 TPiL~~~~~egga~~F~v-------------------------------------------------------------- 285 (548)
T 3i7f_A 268 TPKLIGCSSEGGSNIFEV-------------------------------------------------------------- 285 (548)
T ss_dssp CCSBC---------------------------------------------------------------------------
T ss_pred CCEEecccCCCCcceeEE--------------------------------------------------------------
Confidence 999999999999999965
Q ss_pred hhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccch
Q 006717 341 LVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVET 419 (634)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~ 419 (634)
+||++++||+||||||||++ ++|++||||||||||||+++|.|||||||||||
T Consensus 286 --------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~ 339 (548)
T 3i7f_A 286 --------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDI 339 (548)
T ss_dssp --------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEE
T ss_pred --------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhh
Confidence 46899999999999999985 568999999999999999999999999999999
Q ss_pred hhcCC-CHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccc
Q 006717 420 EIAFS-QLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETK 498 (634)
Q Consensus 420 E~af~-d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~ 498 (634)
||+|. |++|+|+++|+||+++++.+.++|..++++++..++... +. + .||+||||.||+++|++.+. .
T Consensus 340 e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~---~~--~-~pf~rit~~eai~~l~~~g~-----~ 408 (548)
T 3i7f_A 340 EMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFED---LI--Y-RPFLRLTYKEAIEMLRASGE-----T 408 (548)
T ss_dssp EEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCC---CC--C-CSCEEEEHHHHHHHHHHTTC-----C
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCccc---cc--c-CCcceeEHHHHHHHHHHcCC-----C
Confidence 99998 699999999999999999999999888887766554211 11 1 69999999999999987632 3
Q ss_pred cccccccChHHHHhHHh---hhCCc-cEEEEeCCCCCCCCccccC-CCCCceEEEEEeecCCeEEechhhhHHhHHHHHH
Q 006717 499 LEWGVALTAEHLSYLAD---EIYKR-PVIVYNYPKAVKPFYVRLN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNT 573 (634)
Q Consensus 499 ~~~G~dL~~e~Er~L~e---~~~~~-PvfVtdyP~~~kPFy~~~~-~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~ 573 (634)
..|+.|++.++|++|++ +.++. ++||+|||++++||||+.+ +|+++++|||||+| |+||+||++|+++++.|.+
T Consensus 409 ~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~-G~Ei~nG~~rl~Dp~~~~~ 487 (548)
T 3i7f_A 409 IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVR-GQEITSGAQRIHDPEFLMK 487 (548)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEET-TEEEEEEEEECCCHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEEC-CEEEeeCeeecCCHHHHHH
Confidence 56899999999998765 33455 4677899999999998755 57789999999995 8999999999999999999
Q ss_pred HHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 574 RIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 574 ~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
++++.|++++.|+|||+|++||||||||||||||||+||+||++||||||+|||+|+||.
T Consensus 488 R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 488 RCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp HHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred HHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 5
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-101 Score=842.95 Aligned_cols=390 Identities=23% Similarity=0.434 Sum_probs=357.8
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCCC--CCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCCCCC
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVSP--SKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLSRKR 214 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~~--~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~ 214 (634)
+++|++|+||||. ||||++.+...+ .+.++.||+|.|+|+|++++ .++|++||+|+++++||+|. .+||++++.
T Consensus 33 ~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~el~~~~~~vl~~~~-~~~P~~~~~ 108 (429)
T 1wyd_A 33 GKKFIILRDKTGL--GQVVVDKNSSAFGISQELTQESVIQVRGIVKADK-RAPRGIELHAEEITLLSKAK-APLPLDVSG 108 (429)
T ss_dssp TEEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECS-SSGGGEEEEEEEEEEEECCC-SSCSSCSSS
T ss_pred CeEEEEEEECCee--EEEEEeCChHHHHHHHhCCCCCEEEEEEEEEecC-CCCccEEEEEeEEEEeccCC-CCCCCCccc
Confidence 8999999999997 999997654222 36799999999999999998 45689999999999999994 479998876
Q ss_pred ---CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCC
Q 006717 215 ---LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPK 291 (634)
Q Consensus 215 ---~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~ 291 (634)
++.|+|+++||||+|++..++++++||.|++++|+||.++||+||+||+|++++|||++++|.|
T Consensus 109 ~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~------------- 175 (429)
T 1wyd_A 109 KVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPV------------- 175 (429)
T ss_dssp CCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEE-------------
T ss_pred cccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEE-------------
Confidence 8999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCc
Q 006717 292 TAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSR 371 (634)
Q Consensus 292 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~ 371 (634)
+|||+
T Consensus 176 ---------------------------------------------------------------------------~~~~~ 180 (429)
T 1wyd_A 176 ---------------------------------------------------------------------------IYFGK 180 (429)
T ss_dssp ---------------------------------------------------------------------------EETTE
T ss_pred ---------------------------------------------------------------------------ecCCc
Confidence 47899
Q ss_pred eeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccc
Q 006717 372 QTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKD 451 (634)
Q Consensus 372 ~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~d 451 (634)
++||+||||||+|+|++|++|||+||||||||++++.||+|||||||+|++|.|++|+|+++|+|++++++.++++|..+
T Consensus 181 ~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~ 260 (429)
T 1wyd_A 181 EAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEE 260 (429)
T ss_dssp EEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred eEEecCCcHHHHHHHHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999999999999888999999999999999999899999999999999999999999999999999999999998888
Q ss_pred hhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCCC
Q 006717 452 LEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAV 531 (634)
Q Consensus 452 l~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~ 531 (634)
+++++..++. ++.||+||||.||++++.+.+ + ...||.|+++++|++|++.+.++|+||+|||.++
T Consensus 261 l~~~~~~~~~---------l~~pf~rity~eA~~~~~~~g---~--~~~~~~~l~~~~e~~l~~~~~~~p~fv~d~P~~~ 326 (429)
T 1wyd_A 261 LKILNYEPPE---------VKIPIKRLKYTEAIEILRSKG---Y--NIKFGDDIGTPELRILNEELKEDLYFIVDWPSDA 326 (429)
T ss_dssp HHHHTCCCCC---------CCSSCEEEEHHHHHHHHHHSS---C--CCCTTSCCCHHHHHHHHHHHCCSEEEEECCBGGG
T ss_pred hhhccccccc---------CCCCccEEEHHHHHHHHHhcC---C--CcccCcccCcHHHHHHHHHhccCCEEEecCChhh
Confidence 8887764431 357999999999999987652 2 3679999999999999987766799999999999
Q ss_pred CCCccccCC-CCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHH
Q 006717 532 KPFYVRLND-DGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMV 610 (634)
Q Consensus 532 kPFy~~~~~-d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLv 610 (634)
+|||++.++ |+.++++||||+| |.||+|||+|+|+++.|.+++++.|++++.|+|||+|++||+|||||||||||||+
T Consensus 327 ~pfy~~~~~~~p~~~~~fDl~~~-G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLv 405 (429)
T 1wyd_A 327 RPFYTKSKSENPELSESFDLIYK-FLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLM 405 (429)
T ss_dssp SCTTBCBCCC-CCBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHH
T ss_pred ChhhCCcCCCCCCeEEEEEEEEC-CEEEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHH
Confidence 999987664 5679999999995 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcCccccCCCCCCCCC
Q 006717 611 LFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 611 m~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
|+|||.+||||||+|||++++|.
T Consensus 406 mll~g~~~Irdvi~FP~~~~~~~ 428 (429)
T 1wyd_A 406 VMLTGIQSVKEIVPFPRDKKRLT 428 (429)
T ss_dssp HHHHCCCCGGGTSSSCCBTTBCC
T ss_pred HHHcCCCcHHhEEecCCCCCCCC
Confidence 99999999999999999999986
No 6
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=4.7e-101 Score=836.83 Aligned_cols=383 Identities=23% Similarity=0.381 Sum_probs=297.9
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCCCCCCCC-CCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCCCCCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVSPSKIRP-IGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLSRKR 214 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~-~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl~kk~ 214 (634)
|+++|++|+|||+. ||||++. +.|+ .||+|.|+|+|++++ .++|++||+|+++++|++|. .+||++++.
T Consensus 29 g~~~F~~lrD~~g~--iQ~v~~~------~~l~~~~~~v~v~G~v~~~~-~~~~~~el~~~~~~vl~~~~-~~~P~~~~~ 98 (422)
T 1n9w_A 29 GRIQFLLLRDRSGV--VQVVTGG------LKLPLPESALRVRGLVVENA-KAPGGLEVQAKEVEVLSPAL-EPTPVEIPK 98 (422)
T ss_dssp SSEEEEEEEETTEE--EEEEEES------CCCCCTTCEEEEEEEEEECT-TSTTSEEEEEEEEEEEECCC-SCCC-----
T ss_pred CCeEEEEEEECCEE--EEEEEEc------cccCCCCCEEEEEEEEEecC-CCCccEEEEEeEEEEeccCC-cCCCCCccc
Confidence 38999999999997 9999975 4588 999999999999998 44689999999999999995 479998877
Q ss_pred ----CChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCC
Q 006717 215 ----LPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGP 290 (634)
Q Consensus 215 ----~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~ 290 (634)
++.|+|+++||||+|++.+++++++||.|++++|+||.++||+||+||+|++++|||++++|.|
T Consensus 99 ~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~------------ 166 (422)
T 1n9w_A 99 EEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------------ 166 (422)
T ss_dssp ------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------
T ss_pred cccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEE------------
Confidence 8999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccC
Q 006717 291 KTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFS 370 (634)
Q Consensus 291 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg 370 (634)
+|||
T Consensus 167 ----------------------------------------------------------------------------~~~g 170 (422)
T 1n9w_A 167 ----------------------------------------------------------------------------DYFE 170 (422)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------eeCC
Confidence 4688
Q ss_pred ceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCC-CHHHHHHHHHHHHHHHHHHHHhhCc
Q 006717 371 RQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS-QLEDAMKCADDYFKFLCKWILEDCS 449 (634)
Q Consensus 371 ~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~-d~~dlm~l~E~Lik~l~~~vl~~~~ 449 (634)
+++||+||||||+|++++|++|||+||||||||++++.||+|||||||+|++|+ |++|+|+++|+||+++++.++++|.
T Consensus 171 ~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~ 250 (422)
T 1n9w_A 171 KRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAG 250 (422)
T ss_dssp --------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccch
Confidence 899999999999999888899999999999999999889999999999999999 9999999999999999999999988
Q ss_pred cchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhC----CccEEEE
Q 006717 450 KDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIY----KRPVIVY 525 (634)
Q Consensus 450 ~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~----~~PvfVt 525 (634)
.++++++..++. ...||+||||.||++++++.+ ...||.|+.+++|++|++.+. .+|+||+
T Consensus 251 ~~i~~~~~~~~~---------~~~pf~rity~eA~~~~~~~~------~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~ 315 (422)
T 1n9w_A 251 DEIRLLGATWPS---------FPQDIPRLTHAEAKRILKEEL------GYPVGQDLSEEAERLLGEYAKERWGSDWLFVT 315 (422)
T ss_dssp HHHHHTTCCCCC---------CSSSCCEEEHHHHHHHHHHTS------CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred hhhhhcCccccc---------cCCCcceeEHHHHHHHHHhcC------CcccccccCcHHHHHHHHHHHhhhCCceEEEE
Confidence 888887764431 226999999999999987653 367999999999998877553 3799999
Q ss_pred eCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeecc
Q 006717 526 NYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFG 605 (634)
Q Consensus 526 dyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLG 605 (634)
|||.+++||||+.++| +++++||||+| |.||+|||+|+|+++.|.+++++.|++++.|+|||+|++||+|||||||||
T Consensus 316 d~P~~~~pf~~~~~~d-~~~~~fDL~~~-G~Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glG 393 (422)
T 1n9w_A 316 RYPRSVRPFYTYPEED-GTTRSFDLLFR-GLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIG 393 (422)
T ss_dssp CCBGGGSCTTBCBCTT-SBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEE
T ss_pred CCChhhCcCcCCCCCC-CEEEEEEEEEC-CEEEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEc
Confidence 9999999999998877 88999999995 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 606 FDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 606 iERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||||+|++||.+||||||+|||++++|.
T Consensus 394 iDRLvm~l~g~~~Irdvi~FPr~~~~~~ 421 (422)
T 1n9w_A 394 AERLTQKLLGLPNVRYARAFPRDRHRLT 421 (422)
T ss_dssp HHHHHHHHTTCSSGGGGCSCC-------
T ss_pred HHHHHHHHhCCCcHHhEEecCCCCCCCC
Confidence 9999999999999999999999999985
No 7
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=7.4e-100 Score=840.54 Aligned_cols=438 Identities=21% Similarity=0.367 Sum_probs=379.4
Q ss_pred hhhhhcc--cccceeeeeecCCCC--CcccccccceeeeccCCCCCCCce-EEEEEEcCccceeEEEEEeCCC----CC-
Q 006717 93 VEILQSR--IPFFRTIIRVLGGSA--GISNNVPLREKLEALVPKPPPPST-VFLQVSDGSCVASLQVVVESTL----VS- 162 (634)
Q Consensus 93 ~~~~qs~--~~~fr~~~~v~~~~~--~~~~~V~vrGRi~~~R~~~~~G~l-~Fl~l~Dgs~~~~lQvV~~~~~----~~- 162 (634)
.||+||+ ...-+.+..+.++.. ..+++|+|+|||+++|. +|++ +|++|+||+|. ||||++.+. ..
T Consensus 8 ~~~~~s~~~~~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~---~g~~l~Fi~LrD~~g~--iQvv~~~~~~~~~~~~ 82 (487)
T 1eov_A 8 LPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQ---QGATLAFLTLRQQASL--IQGLVKANKEGTISKN 82 (487)
T ss_dssp CCCCCCCGGGCCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEE---CSSSEEEEEEEETTEE--EEEEEECCSSSSSCHH
T ss_pred ccccccccccccccceeEHHHhcccccCCCEEEEEEEEEEeec---cCCccEEEEEEECCcc--EEEEEeccccccccHH
Confidence 3678887 444455555666543 35688999999999999 8887 99999999996 999998652 11
Q ss_pred ---CCCCCCCCcEEEEEEEEecCCCC----CCceEEEEEeeeEEEecCCCCCCCCCCC---------------CCChhhc
Q 006717 163 ---PSKIRPIGTCLMVEGVLKQPSVQ----GKHAVELKVEKILHIGTVDHDKYPLSRK---------------RLPMDML 220 (634)
Q Consensus 163 ---~~~~l~~Gs~V~V~G~l~~~~~~----~~q~vEL~~~~i~vlg~~~~~~yPl~kk---------------~~~~e~l 220 (634)
..+.|+.||+|.|+|+|++++.+ ++|++||+|++|++|++|. .+||++.+ .++.|+|
T Consensus 83 ~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~-~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r 161 (487)
T 1eov_A 83 MVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETP-EALPILLEDASRSEAEAEAAGLPVVNLDTR 161 (487)
T ss_dssp HHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCC-SSCSSCHHHHTSCHHHHHHTTCCCCCHHHH
T ss_pred HHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeeccc-ccCCcchhhcccccccccccccccCChhhh
Confidence 23579999999999999998742 3589999999999999996 36898643 3678999
Q ss_pred cccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCCCCcccccccch
Q 006717 221 RDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVN 300 (634)
Q Consensus 221 r~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~ 300 (634)
+++||||+|++.+++++|+||.|++++|+||.++||+||+||+|++++|||++++|.|
T Consensus 162 ~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~---------------------- 219 (487)
T 1eov_A 162 LDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV---------------------- 219 (487)
T ss_dssp HHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE----------------------
T ss_pred hhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee----------------------
Confidence 9999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchH
Q 006717 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGR 380 (634)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQ 380 (634)
+|||+++||+||||
T Consensus 220 ------------------------------------------------------------------~~~~~~~~L~~Spq 233 (487)
T 1eov_A 220 ------------------------------------------------------------------TYFKGKAYLAQSPQ 233 (487)
T ss_dssp ------------------------------------------------------------------EETTEEEEECSCTH
T ss_pred ------------------------------------------------------------------ccCCccEEcccChH
Confidence 35899999999999
Q ss_pred HHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCC-CHHHHHHHHHHHHHHHHHHHHhhCccchhhhccc
Q 006717 381 LHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS-QLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKR 458 (634)
Q Consensus 381 L~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~-d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~ 458 (634)
||+|+| ++|++||||||||||||+++|.||+|||||||+||+|. |++|+|+++|+||+++++.+++++..+|..++..
T Consensus 234 l~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~ 313 (487)
T 1eov_A 234 FNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQ 313 (487)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhh
Confidence 999996 56899999999999999999999999999999999997 5999999999999999999999988777776654
Q ss_pred cchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhh---hC-CccEEEEeCCCCCCCC
Q 006717 459 IDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADE---IY-KRPVIVYNYPKAVKPF 534 (634)
Q Consensus 459 ~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~---~~-~~PvfVtdyP~~~kPF 534 (634)
++...++. ....||+||+|.||+++|++.+ ....|+.|+..++|++|++. .+ ..|+||+|||.+++||
T Consensus 314 ~~~~~~~~---~~~~~~~ri~~~ea~~~l~~~g-----~~~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pf 385 (487)
T 1eov_A 314 YPVEEFKL---PKDGKMVRLTYKEGIEMLRAAG-----KEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPF 385 (487)
T ss_dssp SCCCCCCC---CTTCCCEEEEHHHHHHHHHHTT-----CCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCT
T ss_pred cCCcceec---ccCCCeeEEEHHHHHHHHHHhC-----CCCCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChh
Confidence 43222211 1134899999999999887653 23567889999999988743 23 4578999999999999
Q ss_pred cc-ccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCcc--ChHHHHHHHhcCCCCcceeeccHHHHHH
Q 006717 535 YV-RLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPRE--QYEWYLDLRRHGTVKHSGFSFGFDLMVL 611 (634)
Q Consensus 535 y~-~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~--~~~wYLda~kyG~PPhgGfGLGiERLvm 611 (634)
|+ +.++|+++++|||||+ +|+||+|||+|+|+++.|.+++++.|++++ .|+|||+|++||+|||||||||||||+|
T Consensus 386 y~~~~~~dp~~~~~fDL~~-~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvm 464 (487)
T 1eov_A 386 YTMPDPANPKYSNSYDFFM-RGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVM 464 (487)
T ss_dssp TBCBCSSCTTBBSEEEEEE-TTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHH
T ss_pred hcCcCCCCCCeEEEEEEEe-CCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHH
Confidence 75 4556778999999999 589999999999999999999999999998 7999999999999999999999999999
Q ss_pred HhcCCCCcCccccCCCCCCCCC
Q 006717 612 FTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 612 ~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
+|||.+||||||+|||+++||.
T Consensus 465 ll~g~~~IRdVi~FPr~~~r~~ 486 (487)
T 1eov_A 465 FYLDLKNIRRASLFPRDPKRLR 486 (487)
T ss_dssp HHTTCSSGGGGCSSCCBTTBCC
T ss_pred HHcCCCcHHheeecCCCCCCCC
Confidence 9999999999999999999986
No 8
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=7.7e-100 Score=830.13 Aligned_cols=392 Identities=33% Similarity=0.588 Sum_probs=357.2
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC---C--CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCC-
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV---S--PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPL- 210 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~---~--~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl- 210 (634)
+++|++|+||||. ||||++.+.. . ..+.|+.||+|.|+|+|++++ .++|++||+|+++++|++| .+||+
T Consensus 33 ~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~el~~~~~~vl~~~--~~~P~~ 107 (434)
T 1x54_A 33 KKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE-RAPGGAEVHVEKLEVIQAV--SEFPIP 107 (434)
T ss_dssp TEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT-TSGGGEEEEEEEEEEEECC--SCCSSC
T ss_pred CeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC-CCCccEEEEEeEEEEeecC--CCCCCc
Confidence 8999999999997 9999965321 1 125689999999999999998 4568999999999999999 47999
Q ss_pred -CCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccccCC
Q 006717 211 -SRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEG 289 (634)
Q Consensus 211 -~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~ 289 (634)
+++.++.|+|+++||||+|++..++++++||.|++++|+||.++||+||+||+|+.++|||++++|.|
T Consensus 108 ~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~----------- 176 (434)
T 1x54_A 108 ENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL----------- 176 (434)
T ss_dssp SSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEE-----------
T ss_pred ccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEE-----------
Confidence 78789999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCccccccccc
Q 006717 290 PKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFF 369 (634)
Q Consensus 290 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ff 369 (634)
+||
T Consensus 177 -----------------------------------------------------------------------------~~~ 179 (434)
T 1x54_A 177 -----------------------------------------------------------------------------KYF 179 (434)
T ss_dssp -----------------------------------------------------------------------------EET
T ss_pred -----------------------------------------------------------------------------eec
Confidence 478
Q ss_pred CceeeeccchHHHHHHHHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCc
Q 006717 370 SRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCS 449 (634)
Q Consensus 370 g~~~yLtvSpQL~le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~ 449 (634)
|+++||+||||||+|++++|++|||+||||||||++++.||+|||||||+|++|.|++|+|+++|+|++++++.++++|.
T Consensus 180 ~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~ 259 (434)
T 1x54_A 180 DKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRK 259 (434)
T ss_dssp TEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhch
Confidence 99999999999999998789999999999999999998899999999999999999999999999999999999999998
Q ss_pred cchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCC
Q 006717 450 KDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPK 529 (634)
Q Consensus 450 ~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~ 529 (634)
.++++++..++ .++ . ++.||+||||.||++++++.+ ..++||.|+.+++|++|++.+ .+|+||+|||.
T Consensus 260 ~~i~~~~~~~~--~~~---~-~~~pf~rity~ea~~~~~~~g-----~~~~~~~dl~~~~e~~l~~~~-~~p~fv~d~P~ 327 (434)
T 1x54_A 260 KEIEMFRDDLT--TLK---N-TEPPFPRISYDEAIDILQSKG-----VNVEWGDDLGADEERVLTEEF-DRPFFVYGYPK 327 (434)
T ss_dssp HHHHTTCSCCH--HHH---T-CCSSCCEEEHHHHHHHHHHTT-----CCCCTTCCCCHHHHHHHHTTC-SSCEEEEEEEG
T ss_pred hhhhhcCcccc--ccc---c-cCCCCcEEEHHHHHHHHHhcC-----CCcccCCccChHHHHHHHHHh-CCcEEEEcCCh
Confidence 88988877654 122 1 367999999999999987653 236799999999999998755 67999999999
Q ss_pred CCCCCccccC-CCCCceEEEEEeec-CCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHH
Q 006717 530 AVKPFYVRLN-DDGNTVAAFDMVVP-KGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFD 607 (634)
Q Consensus 530 ~~kPFy~~~~-~d~~~~~~fDLlvP-~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiE 607 (634)
+++|||++.+ +|+.++++||||+| +.|||+|||+|+|+++.|.+++++.|++++.|+|||+|++||+|||||||||||
T Consensus 328 ~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiD 407 (434)
T 1x54_A 328 HIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVE 407 (434)
T ss_dssp GGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHH
T ss_pred hhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHH
Confidence 9999998766 45679999999996 446999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 608 LMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 608 RLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||+|++||.+||||||+|||++++|.
T Consensus 408 RLvmll~g~~~Irdvi~FP~~~~~~~ 433 (434)
T 1x54_A 408 RLVAWVLKLDHIRWAALFPRTPARLY 433 (434)
T ss_dssp HHHHHHTTCSSGGGGSSSCCBTTBCC
T ss_pred HHHHHHcCCCcHHhEEEccCcCCCCC
Confidence 99999999999999999999999985
No 9
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=6.8e-99 Score=836.27 Aligned_cols=403 Identities=18% Similarity=0.278 Sum_probs=344.7
Q ss_pred ccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC-----CCCCCCCCcEEEEEEEEecCCCCCCceEE
Q 006717 117 SNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS-----PSKIRPIGTCLMVEGVLKQPSVQGKHAVE 191 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~-----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vE 191 (634)
+++|+|+|||+++|. +|+++|++|+|||+. ||||++.+... ..+.++.||+|.|+|+|++++ +|++|
T Consensus 86 g~~V~v~GwV~~~R~---~Gk~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---~gele 157 (529)
T 4ex5_A 86 SLEVAIAGRMMLKRV---MGKASFATVQDGSGQ--IQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN---KGELS 157 (529)
T ss_dssp CCEEEEEEEEEEEEE---ETTEEEEEEECSSCE--EEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---TSCEE
T ss_pred CcEEEEEEEEEeeec---CCCeEEEEEEeCCee--EEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC---CCcEE
Confidence 356777777777777 779999999999985 99999764211 124699999999999999987 68999
Q ss_pred EEEeeeEEEecCCCCCCCCCCCCCC---hhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 192 LKVEKILHIGTVDHDKYPLSRKRLP---MDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 192 L~~~~i~vlg~~~~~~yPl~kk~~~---~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
|+|++|++||+|. +|||.|.++ .|+|+++||||+| ++.++++||+||.|++++|+||+++||+||+||+|+++
T Consensus 158 l~~~~i~vLs~a~---~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~ 234 (529)
T 4ex5_A 158 VKCTQLRLLAKAL---RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPI 234 (529)
T ss_dssp EEEEEEEEEECCS---SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred EEEEEEEEEecCC---CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc
Confidence 9999999999985 788888764 5899999999998 78999999999999999999999999999999999988
Q ss_pred CCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006717 268 DSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLES 347 (634)
Q Consensus 268 ~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (634)
.+|+++++|.+.
T Consensus 235 ~gGA~a~pF~t~-------------------------------------------------------------------- 246 (529)
T 4ex5_A 235 PGGAAAKPFVTH-------------------------------------------------------------------- 246 (529)
T ss_dssp CCSSSSCCCEEE--------------------------------------------------------------------
T ss_pred CCCCcccccccc--------------------------------------------------------------------
Confidence 655557899642
Q ss_pred hhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCH
Q 006717 348 RDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQL 426 (634)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~ 426 (634)
.++|++++||+||||||||+| ++||+||||||||||||+++ +|||||||||||||||+|+
T Consensus 247 ------------------~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d~ 307 (529)
T 4ex5_A 247 ------------------HNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTDY 307 (529)
T ss_dssp ------------------ETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCCH
T ss_pred ------------------cccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCCH
Confidence 367999999999999999995 57999999999999999997 7999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhc---------------
Q 006717 427 EDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVT--------------- 491 (634)
Q Consensus 427 ~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~--------------- 491 (634)
+|+|+++|+||+++++.+++++ ++.+.+..+| ++.||+||||.||++.+....
T Consensus 308 ~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~id----------~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~ 375 (529)
T 4ex5_A 308 RWLMDFTERLIRQAAVDALGTA--TIQYQGRELD----------LAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSEL 375 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS--EEEETTEEEE----------TTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcC--ceecCceeec----------cCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHH
Confidence 9999999999999999999876 4555554433 567999999999998764310
Q ss_pred -cccccccc----cccc-ccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhH
Q 006717 492 -EKIFETKL----EWGV-ALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNE 565 (634)
Q Consensus 492 -~~~f~~~~----~~G~-dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe 565 (634)
..+++... .|+. ++..+++..++|+.+.+|+||+|||++++|||++.++|+++++|||||+| |+||+||++|+
T Consensus 376 ~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P~FI~dyP~~~splak~~~~~p~~~~rFeL~i~-G~EianG~~el 454 (529)
T 4ex5_A 376 KRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLARESDTVAGITERFELFIT-GREIANGFSEL 454 (529)
T ss_dssp HHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSCEEEEEEEGGGCTTBCBCSSSTTEEEEEEEEET-TEEEEEEEEBC
T ss_pred HHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCCEEEECCchhhCCCcccCCCCCCceEEEEEEEC-CEEEecchhcc
Confidence 01222333 5765 57788888889999999999999999999999988888999999999995 89999999999
Q ss_pred HhHHHHHHHHHH------cCCCccC--hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCC
Q 006717 566 ERIDMLNTRIKE------LGLPREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 566 ~r~e~L~~~~~~------~gl~~~~--~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~ 630 (634)
++++.+.+++.+ .|.+++. ++|||+|++||||||||||||||||+|+|||.+||||||+|||++.
T Consensus 455 ~Dp~~q~~rf~~q~~~~~~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 455 NDPEDQAARFKKQVEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCC
Confidence 999887777643 4555544 4999999999999999999999999999999999999999999875
No 10
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=5.6e-98 Score=830.75 Aligned_cols=414 Identities=14% Similarity=0.199 Sum_probs=348.7
Q ss_pred cccccccceeeeccCCCCCCC-ceEEEEEEcCccceeEEEEEeCCCC----CC---CCCCCCCcEEEEEEEEecCCCCCC
Q 006717 116 ISNNVPLREKLEALVPKPPPP-STVFLQVSDGSCVASLQVVVESTLV----SP---SKIRPIGTCLMVEGVLKQPSVQGK 187 (634)
Q Consensus 116 ~~~~V~vrGRi~~~R~~~~~G-~l~Fl~l~Dgs~~~~lQvV~~~~~~----~~---~~~l~~Gs~V~V~G~l~~~~~~~~ 187 (634)
.+++|+|+|||+++|. +| +++|++|+|||+. ||||++.+.. .+ .+.++.||+|.|+|+|.+++ +
T Consensus 54 ~~~~V~v~Grv~~~R~---~gkk~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---~ 125 (521)
T 3bju_A 54 TDITLKVAGRIHAKRA---SGGKLIFYDLRGEGVK--LQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK---K 125 (521)
T ss_dssp SSCCEEEEEEEEEEEE---SSSSEEEEEEEETTEE--EEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT---T
T ss_pred CCcEEEEEEEEEEEec---CCCCcEEEEEEECCEE--EEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC---C
Confidence 4578999999999998 89 9999999999985 9999976532 12 24589999999999999997 6
Q ss_pred ceEEEEEeeeEEEecCCCCCCCCCCC-CCChhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeee
Q 006717 188 HAVELKVEKILHIGTVDHDKYPLSRK-RLPMDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVIT 265 (634)
Q Consensus 188 q~vEL~~~~i~vlg~~~~~~yPl~kk-~~~~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt 265 (634)
|++||+|++|.+|++|. .++|+... ..+.|+|+++||||+| ++.++++||+||.|++++|+||.++||+||+||+|+
T Consensus 126 ge~ei~~~~i~~l~~~~-~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~ 204 (521)
T 3bju_A 126 GELSIIPYEITLLSPCL-HMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMN 204 (521)
T ss_dssp CCEEEEEEEEEEEECCC-SCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEE
T ss_pred CCEEEEEeEEEEeecCC-CCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceee
Confidence 89999999999999996 24554432 3578999999999999 789999999999999999999999999999999999
Q ss_pred cCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006717 266 TTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHL 345 (634)
Q Consensus 266 ~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (634)
+++||+++++|.|.
T Consensus 205 ~~~gGa~a~~F~t~------------------------------------------------------------------ 218 (521)
T 3bju_A 205 IIPGGAVAKPFITY------------------------------------------------------------------ 218 (521)
T ss_dssp SSCCSSSCCCCEEE------------------------------------------------------------------
T ss_pred ccCCCccccceeee------------------------------------------------------------------
Confidence 98777678999652
Q ss_pred hhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCC
Q 006717 346 ESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS 424 (634)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~ 424 (634)
.+|||+++||+||||||||+| ++||+||||||||||||+++| ||||||||||+||||+
T Consensus 219 --------------------~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~ 277 (521)
T 3bju_A 219 --------------------HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYA 277 (521)
T ss_dssp --------------------ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETC
T ss_pred --------------------cccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcC
Confidence 257999999999999999986 568999999999999999986 9999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhccc---cc------
Q 006717 425 QLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEK---IF------ 495 (634)
Q Consensus 425 d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~---~f------ 495 (634)
||+|+|+++|+||+++++.+++++ ++++.+...+.. .+...+..||+|+||.||++.+...... .+
T Consensus 278 d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~~d~~---~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~ 352 (521)
T 3bju_A 278 DYHDLMEITEKMVSGMVKHITGSY--KVTYHPDGPEGQ---AYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR 352 (521)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSS--EEEECTTCTTSC---CEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCc--eEEecccccccc---cceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHH
Confidence 999999999999999999999876 455544322211 1122356799999999999876432100 00
Q ss_pred --------------ccccccccccChHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEech
Q 006717 496 --------------ETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITG 561 (634)
Q Consensus 496 --------------~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gG 561 (634)
.....||..|...+|+++.+ .+.+|+||+|||.+++||||+.++|+++++|||||+ +|+||+||
T Consensus 353 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~-~l~~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i-~G~Ei~ng 430 (521)
T 3bju_A 353 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEV-TCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFV-MKKEICNA 430 (521)
T ss_dssp HHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGG-GCCSCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEECCccccCcccccCCCCCCeeeeEEEEE-cceeeecC
Confidence 11233555555666776544 457899999999999999999988999999999999 58999999
Q ss_pred hhhHHhHHHHHHHHHH------cCCCccC--hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCC
Q 006717 562 SQNEERIDMLNTRIKE------LGLPREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKA 632 (634)
Q Consensus 562 sqRe~r~e~L~~~~~~------~gl~~~~--~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~ 632 (634)
++|+++++.+.+++++ .|++++. |+|||+|++||||||||||||||||+|+|||.+||||||+|||+++..
T Consensus 431 ~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~~ 509 (521)
T 3bju_A 431 YTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPED 509 (521)
T ss_dssp EEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC-
T ss_pred hhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCcc
Confidence 9999999888887754 3888776 799999999999999999999999999999999999999999999753
No 11
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=2.3e-97 Score=822.54 Aligned_cols=389 Identities=19% Similarity=0.314 Sum_probs=327.4
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCC-C-----CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCC
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLV-S-----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKY 208 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~-----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~y 208 (634)
+|+++|++|+||||. ||||++.+.. . ..+.++.||+|.|+|+|++++ ++++||+|+++++|++|. +
T Consensus 79 ~gk~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~---~ge~ei~~~~i~vl~~a~---~ 150 (504)
T 1e1o_A 79 MGKASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ---TGELSIHCTELRLLTKAL---R 150 (504)
T ss_dssp ETTEEEEEEEETTEE--EEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCS---S
T ss_pred CCCcEEEEEEECCee--EEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC---CceEEEEEEEEEEecccC---C
Confidence 448999999999995 9999986531 1 235689999999999999987 689999999999999995 5
Q ss_pred CCCCCCCC---hhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccc
Q 006717 209 PLSRKRLP---MDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDK 284 (634)
Q Consensus 209 Pl~kk~~~---~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~ 284 (634)
|+|.+.++ .|+|+++||||+| ++.++++||+||.|++++|+||+++||+||+||+|+++.+|+++++|.|+
T Consensus 151 plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~----- 225 (504)
T 1e1o_A 151 PLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH----- 225 (504)
T ss_dssp CCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-----
T ss_pred CCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-----
Confidence 67777665 8999999999996 88999999999999999999999999999999999987655557999753
Q ss_pred cccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccc
Q 006717 285 REKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNF 364 (634)
Q Consensus 285 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (634)
T Consensus 226 -------------------------------------------------------------------------------- 225 (504)
T 1e1o_A 226 -------------------------------------------------------------------------------- 225 (504)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHH
Q 006717 365 SEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKW 443 (634)
Q Consensus 365 ~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~ 443 (634)
.++|++++||+||||||||+| ++|++||||||||||||+++ +||||||||||+||+|+|++|+|+++|+||+++++.
T Consensus 226 -~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~ 303 (504)
T 1e1o_A 226 -HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQE 303 (504)
T ss_dssp -ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 257999999999999999996 56899999999999999997 599999999999999999999999999999999999
Q ss_pred HHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHH-hccc---------------cccccccccc-ccC
Q 006717 444 ILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEK-VTEK---------------IFETKLEWGV-ALT 506 (634)
Q Consensus 444 vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~-~~~~---------------~f~~~~~~G~-dL~ 506 (634)
+++++. +.+.+..++ ++.||+||||.||++.+.. .... +++....|+. ++.
T Consensus 304 v~~~~~--i~~~~~~i~----------~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~ 371 (504)
T 1e1o_A 304 VLGTTK--VTYGEHVFD----------FGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIV 371 (504)
T ss_dssp HHSSSE--EEETTEEEE----------TTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHH
T ss_pred HhCCce--eeeCCEeec----------cCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHH
Confidence 998873 655544332 4679999999999998754 1000 0111122332 234
Q ss_pred hHHHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHH------cCC
Q 006717 507 AEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE------LGL 580 (634)
Q Consensus 507 ~e~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~------~gl 580 (634)
.++...++++.+.+|+||+|||.+++||||+.++|+++++|||||+ +|.||+||++|+++++.+.+++++ .|.
T Consensus 372 ~~~~~~~ve~~~~~p~fV~dyP~~~~pf~~~~~~dp~~~~~fDL~i-~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~ 450 (504)
T 1e1o_A 372 TEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFI-GGREIGNGFSELNDAEDQAERFQEQVNAKAAGD 450 (504)
T ss_dssp HHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEE-TTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhccCCCeEEEECCCcccCcCcCCCCCCCCceEEEEEEE-CCeEEccceeeeCCHHHHHHHHHHHHHHhhcCC
Confidence 5555567788888999999999999999999888899999999999 588999999999999998888765 244
Q ss_pred CccC--hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCC
Q 006717 581 PREQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGK 631 (634)
Q Consensus 581 ~~~~--~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~ 631 (634)
++.. ++|||+|++||||||||||||||||+|+|||.+||||||+|||++..
T Consensus 451 ~e~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 451 DEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp TTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred hhhhhchHHHHHHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 4332 49999999999999999999999999999999999999999999863
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=1.5e-96 Score=814.62 Aligned_cols=388 Identities=19% Similarity=0.302 Sum_probs=329.0
Q ss_pred CCceEEEEEEcCccceeEEEEEeCCCC---C--CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 135 PPSTVFLQVSDGSCVASLQVVVESTLV---S--PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 135 ~G~l~Fl~l~Dgs~~~~lQvV~~~~~~---~--~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
+|+++|++|+||||. ||||++.+.. . ..+.++.||+|.|+|+|++++ +|++||+|+++++|++|. +|
T Consensus 71 ~gk~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~---~ge~ei~~~~i~vl~~~~---~p 142 (493)
T 3a74_A 71 MGKAGFAHIQDVTGQ--IQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK---VGELSIKVSSYEFLTKAL---RP 142 (493)
T ss_dssp ETTEEEEEEEETTEE--EEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT---TCCEEEEEEEEEEEECCS---SC
T ss_pred CCCcEEEEEEECCEe--EEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC---CCcEEEEEEEEEEccccc---CC
Confidence 348999999999995 9999975421 1 124689999999999999987 689999999999999995 67
Q ss_pred CCCCCCC---hhhccccceeecc-cchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeecccccc
Q 006717 210 LSRKRLP---MDMLRDSAHFRPR-TTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKR 285 (634)
Q Consensus 210 l~kk~~~---~e~lr~~rhLr~R-t~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~ 285 (634)
+|++.++ .|+|+++||||+| ++.++++||+||.|++++|+||.++||+||+||+|+++.+|+++++|.|+
T Consensus 143 lP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~------ 216 (493)
T 3a74_A 143 LPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH------ 216 (493)
T ss_dssp CCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE------
T ss_pred CCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec------
Confidence 7777665 8999999999996 88999999999999999999999999999999999988766668999752
Q ss_pred ccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCccccc
Q 006717 286 EKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFS 365 (634)
Q Consensus 286 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (634)
T Consensus 217 -------------------------------------------------------------------------------- 216 (493)
T 3a74_A 217 -------------------------------------------------------------------------------- 216 (493)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHH
Q 006717 366 EDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWI 444 (634)
Q Consensus 366 ~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~v 444 (634)
.++||+++||+||||||||+| ++|++||||||||||||+++ +||||||||||+||+|+|++|+|+++|+||+++++.+
T Consensus 217 ~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v 295 (493)
T 3a74_A 217 HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEV 295 (493)
T ss_dssp ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 257899999999999999996 56899999999999999997 5999999999999999999999999999999999999
Q ss_pred HhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcc---------------ccccccccccc-ccChH
Q 006717 445 LEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTE---------------KIFETKLEWGV-ALTAE 508 (634)
Q Consensus 445 l~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~---------------~~f~~~~~~G~-dL~~e 508 (634)
++++ .+.+.+..++ ++.||+||||.||++.+..... .++.....|+. ++..+
T Consensus 296 ~~~~--~i~~~~~~i~----------~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~ 363 (493)
T 3a74_A 296 LGTT--KIQYGEHLVD----------LTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNE 363 (493)
T ss_dssp HSCS--EEEETTEEEE----------CCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHH
T ss_pred hCCc--eEeeCCEeec----------cCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHH
Confidence 9887 3655444332 4679999999999987643100 01122223432 34455
Q ss_pred HHHhHHhhhCCccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHH------cCCCc
Q 006717 509 HLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKE------LGLPR 582 (634)
Q Consensus 509 ~Er~L~e~~~~~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~------~gl~~ 582 (634)
+...++++.+.+|+||+|||.+++||||+.++|+++++|||||+ +|.||+||++|+++++.+.+++++ .|.++
T Consensus 364 ~~~~~ve~~~~~p~fv~dyP~~~~pf~~~~~~dp~~~~~fDL~i-~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e 442 (493)
T 3a74_A 364 FFEQKVEDKLIQPTFIYGHPVEISPLAKKNPDDPRFTDRFELFI-VGREHANAFTELNDPIDQRQRFEEQLKEREQGNDE 442 (493)
T ss_dssp HHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEE-TTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhcccCCcEEEECCCcccCCccCcCCCCCCeEEEEEEEe-CCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCch
Confidence 55567788888999999999999999999888899999999999 588999999999999998888764 34443
Q ss_pred cC--hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCC
Q 006717 583 EQ--YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630 (634)
Q Consensus 583 ~~--~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~ 630 (634)
.. ++|||+|++||+|||||||||||||+|+|||.+||||||+|||++.
T Consensus 443 ~~~~d~~yl~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 443 AHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp SCCCCHHHHHHHHTCCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred hhhccHHHHHHHhCCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 32 4999999999999999999999999999999999999999999875
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=1.1e-94 Score=812.77 Aligned_cols=386 Identities=18% Similarity=0.305 Sum_probs=320.8
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCC--CCCCCCCCcEEEEEEEEecCCC---C-CCceEEEEEeeeEEEecCCCCCCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVS--PSKIRPIGTCLMVEGVLKQPSV---Q-GKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~--~~~~l~~Gs~V~V~G~l~~~~~---~-~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
|+++|++||||||. ||||++.+... ..+.|+.||+|.|+|+|+.++. + ++|++||+|+++++|++|.+.+||
T Consensus 32 G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~ 109 (580)
T 1l0w_A 32 GGLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFP 109 (580)
T ss_dssp SSCEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSC
T ss_pred CCeEEEEEEECCee--EEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCC
Confidence 38999999999996 99999765322 2367999999999999999852 1 468999999999999999755788
Q ss_pred CCC------C-CCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccc
Q 006717 210 LSR------K-RLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLF 282 (634)
Q Consensus 210 l~k------k-~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~ 282 (634)
+.+ + .++.|+|+++||||+|++.++++||+||.|++++|+||+++||+||+||+|+.++||||++ |.|++.
T Consensus 110 i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~- 187 (580)
T 1l0w_A 110 VDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYR- 187 (580)
T ss_dssp CSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECT-
T ss_pred cchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCCCCC-cccccc-
Confidence 865 3 4578899999999999999999999999999999999999999999999999999999876 887531
Q ss_pred cccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcc
Q 006717 283 DKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKV 362 (634)
Q Consensus 283 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T Consensus 188 -------------------------------------------------------------------------------- 187 (580)
T 1l0w_A 188 -------------------------------------------------------------------------------- 187 (580)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHH
Q 006717 363 NFSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLC 441 (634)
Q Consensus 363 ~~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~ 441 (634)
.+.+.-+||+||||||||+| ++|++||||||||||||+++ ++|+|||||||+||+|+|++|+|+++|+||++++
T Consensus 188 ----~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~-~~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~ 262 (580)
T 1l0w_A 188 ----HEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLR-ADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVF 262 (580)
T ss_dssp ----TSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred ----ccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCC-CCcCCCccceeeeecCCCHHHHHHHHHHHHHHHH
Confidence 01122236999999999995 67899999999999999997 4666799999999999999999999999999999
Q ss_pred HHHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcc-----------------cccc--------
Q 006717 442 KWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTE-----------------KIFE-------- 496 (634)
Q Consensus 442 ~~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~-----------------~~f~-------- 496 (634)
+.+++.. +..||+||||.||++.+..-.. .+|.
T Consensus 263 ~~v~~~~----------------------~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v 320 (580)
T 1l0w_A 263 REALGVE----------------------LPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESV 320 (580)
T ss_dssp HHHTCCC----------------------CCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEE
T ss_pred HHHhCCc----------------------cCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhcccccccccccee
Confidence 9886421 3459999999999987521000 0000
Q ss_pred ----------------------------c-ccccccc-cChHHHHhHHh-------------------------------
Q 006717 497 ----------------------------T-KLEWGVA-LTAEHLSYLAD------------------------------- 515 (634)
Q Consensus 497 ----------------------------~-~~~~G~d-L~~e~Er~L~e------------------------------- 515 (634)
. .+.|+.+ +.+++++++.+
T Consensus 321 ~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~L 400 (580)
T 1l0w_A 321 KALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATAL 400 (580)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHH
T ss_pred EEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhH
Confidence 0 0234433 44444433211
Q ss_pred ---------hh-----CCccEEEEeCCCC------------CCCCccccCC-------CC-Cc-eEEEEEeecCCeEEec
Q 006717 516 ---------EI-----YKRPVIVYNYPKA------------VKPFYVRLND-------DG-NT-VAAFDMVVPKGGTVIT 560 (634)
Q Consensus 516 ---------~~-----~~~PvfVtdyP~~------------~kPFy~~~~~-------d~-~~-~~~fDLlvP~ggEI~g 560 (634)
.+ ..+|+||+|||.. ++||||++++ || ++ +++||||+ +|.||+|
T Consensus 401 g~lr~~l~~~~~lve~~~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i-~G~Ei~~ 479 (580)
T 1l0w_A 401 GAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVL-NGVEVGG 479 (580)
T ss_dssp HHHHHHHHHHTTCCCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHhcccccccCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEe-CCEEEEe
Confidence 11 4589999999996 8999999876 46 35 89999999 5889999
Q ss_pred hhhhHHhHHHHHHHHHHcCCCccC----hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 561 GSQNEERIDMLNTRIKELGLPREQ----YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 561 GsqRe~r~e~L~~~~~~~gl~~~~----~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
||+|+|+++.|.++++..|++++. |+|||+|++||+|||||||||||||+|+|||.+||||||+|||+++.++
T Consensus 480 Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 480 GSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp EEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred CeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 999999999999999999998776 8999999999999999999999999999999999999999999998774
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=1.1e-94 Score=814.14 Aligned_cols=406 Identities=20% Similarity=0.292 Sum_probs=323.0
Q ss_pred CceEEEEEEcCccceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCC------CCceEEEEEeeeEEEecCCCC
Q 006717 136 PSTVFLQVSDGSCVASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQ------GKHAVELKVEKILHIGTVDHD 206 (634)
Q Consensus 136 G~l~Fl~l~Dgs~~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~------~~q~vEL~~~~i~vlg~~~~~ 206 (634)
|+++|++||||||. ||||++.+... ..+.|+.||+|.|+|+|+.+|.+ ++|++||+|+++++||+|.+.
T Consensus 31 G~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~l 108 (585)
T 1c0a_A 31 GSLIFIDMRDREGI--VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVL 108 (585)
T ss_dssp SSCEEEEEEETTEE--EEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCSC
T ss_pred CCcEEEEEEECCee--EEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEEeEEEEEeccCCC
Confidence 38999999999996 99999764311 23579999999999999998743 479999999999999999754
Q ss_pred CCCCCCCCCChhhccccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCCCCcceeeeccccccc
Q 006717 207 KYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKRE 286 (634)
Q Consensus 207 ~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~~~~ 286 (634)
+||+.+ .++.|+|+++||||+|++.++++||+||.|++++|+||+++||+||+||+|+.++||||++ |.|++.
T Consensus 109 P~~~~~-~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~----- 181 (585)
T 1c0a_A 109 PLDSNH-VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARD-YLVPSR----- 181 (585)
T ss_dssp SSCTTS-CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECS-----
T ss_pred CCCccc-cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCCCcc-ceeccc-----
Confidence 566655 5788999999999999999999999999999999999999999999999999999999877 987532
Q ss_pred cCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccc
Q 006717 287 KEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSE 366 (634)
Q Consensus 287 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (634)
T Consensus 182 -------------------------------------------------------------------------------- 181 (585)
T 1c0a_A 182 -------------------------------------------------------------------------------- 181 (585)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 006717 367 DFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWIL 445 (634)
Q Consensus 367 ~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl 445 (634)
.+.+.-+||+||||||||+| ++||+||||||||||||++++ +|+|||||||+||+|+|++|+|+++|+||+++++.++
T Consensus 182 ~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t-~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~ 260 (585)
T 1c0a_A 182 VHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRA-DRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVK 260 (585)
T ss_dssp SSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBT-TBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCC-CcCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11122237999999999985 678999999999999999985 5666999999999999999999999999999999998
Q ss_pred hhCc---------cchhhhccc-----cchhhhh----------------------hhccc---cCCCCceeeHHHHHHH
Q 006717 446 EDCS---------KDLEFVSKR-----IDMTCID----------------------RLQSV---ISSSFEKITYTEAVKA 486 (634)
Q Consensus 446 ~~~~---------~dl~~~~~~-----~d~~~~~----------------------~l~~~---~~~pf~rity~EAi~~ 486 (634)
+.+. +.++.++.. ++..+++ .++.+ -..+|+|.+|+++.++
T Consensus 261 ~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~ 340 (585)
T 1c0a_A 261 GVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNF 340 (585)
T ss_dssp SCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHH
T ss_pred CCCccccceeeHHHHHHHhcCCCccccCCceeEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHH
Confidence 6541 112211110 0000000 00000 0124677788888887
Q ss_pred HHHhccccccccccccc------ccChHHHHh-----------------------------------------------H
Q 006717 487 LEKVTEKIFETKLEWGV------ALTAEHLSY-----------------------------------------------L 513 (634)
Q Consensus 487 L~~~~~~~f~~~~~~G~------dL~~e~Er~-----------------------------------------------L 513 (634)
+++.+..++. .+.|+. ++.++++++ |
T Consensus 341 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~l 419 (585)
T 1c0a_A 341 VKIYGAKGLA-YIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGL 419 (585)
T ss_dssp HHHTTCSCCC-EEEESCGGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCCce-eEEecccccccccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCc
Confidence 7765332222 133443 132222211 1
Q ss_pred HhhhCCccEEEEeCCCC-----------CCCCccccCC-------CC-Cc-eEEEEEeecCCeEEechhhhHHhHHHHHH
Q 006717 514 ADEIYKRPVIVYNYPKA-----------VKPFYVRLND-------DG-NT-VAAFDMVVPKGGTVITGSQNEERIDMLNT 573 (634)
Q Consensus 514 ~e~~~~~PvfVtdyP~~-----------~kPFy~~~~~-------d~-~~-~~~fDLlvP~ggEI~gGsqRe~r~e~L~~ 573 (634)
+++...+|+||||||.. ++||||++++ || .+ +++||||+ +|.||+|||+|+|+++.|.+
T Consensus 420 ve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i-~G~Ei~~Gs~ri~d~~~q~~ 498 (585)
T 1c0a_A 420 TDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVI-NGYEVGGGSVRIHNGDMQQT 498 (585)
T ss_dssp SCSSCCCEEEEECCBSEEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEE-TTEEEEEEEEBCCCHHHHHH
T ss_pred ccccccccEEEEeCCccccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEE-CCEEEeeeeeecCCHHHHHH
Confidence 12213579999999996 8999999876 46 35 89999999 58899999999999999999
Q ss_pred HHHHcCCCccC----hHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCCCCCC
Q 006717 574 RIKELGLPREQ----YEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 574 ~~~~~gl~~~~----~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
+++..|++++. |+|||+|++||+|||||||||||||+|+|||.+||||||+|||+++.++
T Consensus 499 rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 499 VFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSCB
T ss_pred HHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCCCCCccc
Confidence 99999998875 8999999999999999999999999999999999999999999998774
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-83 Score=720.05 Aligned_cols=376 Identities=17% Similarity=0.268 Sum_probs=305.2
Q ss_pred EEEEEEcCccceeEEEEEeCCCCC-----CCCCCCCCcEEEEEEEEecCCCC------CCceEEEEEeeeEEEecCCCCC
Q 006717 139 VFLQVSDGSCVASLQVVVESTLVS-----PSKIRPIGTCLMVEGVLKQPSVQ------GKHAVELKVEKILHIGTVDHDK 207 (634)
Q Consensus 139 ~Fl~l~Dgs~~~~lQvV~~~~~~~-----~~~~l~~Gs~V~V~G~l~~~~~~------~~q~vEL~~~~i~vlg~~~~~~ 207 (634)
.|++||||++. +|||++.+... ..+.++.||+|.|+|+|+.+|.+ .+|++||+|++|++|++|. +
T Consensus 40 ~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~--~ 115 (617)
T 4ah6_A 40 TFLVLRDFDGL--VQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK--K 115 (617)
T ss_dssp TEEEEECSSCE--EEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC--C
T ss_pred EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--C
Confidence 49999999986 99999875431 23568999999999999986632 2589999999999999996 7
Q ss_pred CCCCCCCC---ChhhccccceeecccchhhHHHHHHHHHHHHHHHHHh-hCCcEEeeCCeeecCCCCCCCcceeeecccc
Q 006717 208 YPLSRKRL---PMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQ-NHGFLYVQVPVITTTDSEGFSEKFQVTTLFD 283 (634)
Q Consensus 208 yPl~kk~~---~~e~lr~~rhLr~Rt~~~~av~riRs~l~~air~ff~-~~gF~eV~TPiLt~s~~EGa~e~F~Vtt~~~ 283 (634)
||++.+.+ +.+.|+++||||+|++.++++||+||.|++++|+||. ++||+||+||+|++++||||++ |.|++
T Consensus 116 lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~--- 191 (617)
T 4ah6_A 116 LPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPS--- 191 (617)
T ss_dssp CSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEEC---
T ss_pred CCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceecc---
Confidence 99987654 4788899999999999999999999999999999996 7999999999999999999875 87642
Q ss_pred ccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCccc
Q 006717 284 KREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVN 363 (634)
Q Consensus 284 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (634)
T Consensus 192 -------------------------------------------------------------------------------- 191 (617)
T 4ah6_A 192 -------------------------------------------------------------------------------- 191 (617)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCceeeeccchHHHHHHH-HcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 364 FSEDFFSRQTYLTVSGRLHLESY-ACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 364 ~~~~ffg~~~yLtvSpQL~le~l-a~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
+.+|+.+||+||||||+|+| ++||+||||||||||||+++ ++|||||||||+||+|+|++|+|+++|+||+++++
T Consensus 192 ---~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~ 267 (617)
T 4ah6_A 192 ---REPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWP 267 (617)
T ss_dssp ---SSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSC
T ss_pred ---ccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHHHHH
Confidence 13567789999999999985 67999999999999999997 56799999999999999999999999999998875
Q ss_pred HHHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHH----------------------------HHh----
Q 006717 443 WILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKAL----------------------------EKV---- 490 (634)
Q Consensus 443 ~vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L----------------------------~~~---- 490 (634)
.+. ..+..||+||||.||+... ++.
T Consensus 268 ~~~-----------------------~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~ 324 (617)
T 4ah6_A 268 NDK-----------------------DPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKP 324 (617)
T ss_dssp SSS-----------------------CCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTST
T ss_pred Hhc-----------------------CccCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcC
Confidence 311 0145689999999999852 110
Q ss_pred cc-------cc----c-----c----cccc-ccc---------------ccC----hHH-----HH--------------
Q 006717 491 TE-------KI----F-----E----TKLE-WGV---------------ALT----AEH-----LS-------------- 511 (634)
Q Consensus 491 ~~-------~~----f-----~----~~~~-~G~---------------dL~----~e~-----Er-------------- 511 (634)
++ .+ + + +... +|. .|. .+. ++
T Consensus 325 ~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag 404 (617)
T 4ah6_A 325 HGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAG 404 (617)
T ss_dssp TEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEE
T ss_pred CCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecC
Confidence 00 00 0 0 0000 110 011 110 00
Q ss_pred --------------hHHhhh------C-----CccEEEEeCCCC-------------CCCCccccCCC-------CC--c
Q 006717 512 --------------YLADEI------Y-----KRPVIVYNYPKA-------------VKPFYVRLNDD-------GN--T 544 (634)
Q Consensus 512 --------------~L~e~~------~-----~~PvfVtdyP~~-------------~kPFy~~~~~d-------~~--~ 544 (634)
.+++.. + ..|+||+|||.. ++||+|+..+| |. .
T Consensus 405 ~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~ 484 (617)
T 4ah6_A 405 EHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKAR 484 (617)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSB
T ss_pred ChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhh
Confidence 122222 1 268999999983 69999987654 32 3
Q ss_pred eEEEEEeecCCeEEechhhhHHhHHHHHHHHH-HcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 545 VAAFDMVVPKGGTVITGSQNEERIDMLNTRIK-ELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 545 ~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~-~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
+.+|||++ +|+||+|||+|+|+++.++++++ ..|++++.|+|||+|++||+|||||||+|||||||+|+|.+||||||
T Consensus 485 a~~ydlv~-~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdvi 563 (617)
T 4ah6_A 485 SQHYDLVL-NGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVI 563 (617)
T ss_dssp CCCEEEEE-TTEEEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGSS
T ss_pred hceEEEEE-CCEEEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheEE
Confidence 67899999 69999999999999999999998 78999888999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 006717 624 PFPRSLG 630 (634)
Q Consensus 624 ~FPr~~~ 630 (634)
+||++..
T Consensus 564 ~fP~~~~ 570 (617)
T 4ah6_A 564 AFPKSFR 570 (617)
T ss_dssp SSCCCSS
T ss_pred ecCCCCC
Confidence 9999763
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=1.9e-75 Score=620.78 Aligned_cols=283 Identities=17% Similarity=0.305 Sum_probs=237.4
Q ss_pred ecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCCCC-CCcceeeeccccccccCCCCcccccccchHHHHH
Q 006717 227 RPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEG-FSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILK 305 (634)
Q Consensus 227 r~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~EG-a~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~ 305 (634)
+.|+. .+++||+||.|++++|+||.++||+||+||+|++++++| ++++|.|
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~--------------------------- 78 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET--------------------------- 78 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE---------------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE---------------------------
Confidence 55666 889999999999999999999999999999999988875 4789975
Q ss_pred HHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccC------ceeeeccch
Q 006717 306 ASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFS------RQTYLTVSG 379 (634)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg------~~~yLtvSp 379 (634)
+||+ .++||+|||
T Consensus 79 -------------------------------------------------------------~~~~~~~~~~~~~yL~~Sp 97 (345)
T 3a5y_A 79 -------------------------------------------------------------RFVGPGHSQGMNLWLMTSP 97 (345)
T ss_dssp -------------------------------------------------------------EECCSTTSCCEEEEECSCS
T ss_pred -------------------------------------------------------------EecCcccccCCCEeecCCH
Confidence 2443 789999999
Q ss_pred HHHHHH-HHcccCceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCccchhhhccc
Q 006717 380 RLHLES-YACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKR 458 (634)
Q Consensus 380 QL~le~-la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~dl~~~~~~ 458 (634)
|||||+ |++|++||||||||||||++ |+||||||||||+||+|+|++|+|+++|+||+++++ +
T Consensus 98 ql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-----~---------- 161 (345)
T 3a5y_A 98 EYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----C---------- 161 (345)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-----C----------
T ss_pred HHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-----C----------
Confidence 999997 57799999999999999999 899999999999999999999999999999999985 1
Q ss_pred cchhhhhhhccccCCCCceeeHHHHHHHHHHhc------------ccccccc-cccc-cccChHHHHhHH---hhhC--C
Q 006717 459 IDMTCIDRLQSVISSSFEKITYTEAVKALEKVT------------EKIFETK-LEWG-VALTAEHLSYLA---DEIY--K 519 (634)
Q Consensus 459 ~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~------------~~~f~~~-~~~G-~dL~~e~Er~L~---e~~~--~ 519 (634)
.||+||||.||++...... ...+... +.|+ .++...+|++++ ++.+ .
T Consensus 162 --------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~ 227 (345)
T 3a5y_A 162 --------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKE 227 (345)
T ss_dssp --------------CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGGGSSSS
T ss_pred --------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCC
Confidence 2899999999997641100 0001112 3444 456667777765 4445 5
Q ss_pred ccEEEEeCCCCCCCCccccCCCCCceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHc-------CCCccCh-HHHHHH
Q 006717 520 RPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKEL-------GLPREQY-EWYLDL 591 (634)
Q Consensus 520 ~PvfVtdyP~~~kPFy~~~~~d~~~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~-------gl~~~~~-~wYLda 591 (634)
+|+||+|||.+++||++...+|+.+++|||||+| |.||+||++|++++++++++++.. |+++..+ +|||+|
T Consensus 228 ~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~-G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~a 306 (345)
T 3a5y_A 228 KPTFVYHFPASQASLAQISTEDHRVAERFEVYYK-GIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEA 306 (345)
T ss_dssp SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHH
T ss_pred CEEEEECCChhhChhhCCCCCCCCeEEEEEEEEC-CEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 7999999999999998877677788999999994 889999999999999999888764 8888887 799999
Q ss_pred HhcCCCCcceeeccHHHHHHHhcCCCCcCccccCCCCC
Q 006717 592 RRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRSL 629 (634)
Q Consensus 592 ~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi~FPr~~ 629 (634)
++||+|||||||||||||+|+|||.+||||||+|||++
T Consensus 307 l~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 307 LKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 99999999999999999999999999999999999984
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=3.4e-69 Score=561.76 Aligned_cols=279 Identities=23% Similarity=0.415 Sum_probs=249.2
Q ss_pred ccceeecccchhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC--------CCCCCCcceeeeccccccccCCCCcc
Q 006717 222 DSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT--------DSEGFSEKFQVTTLFDKREKEGPKTA 293 (634)
Q Consensus 222 ~~rhLr~Rt~~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s--------~~EGa~e~F~Vtt~~~~~~~~~~~~~ 293 (634)
+|||||+|++ .++++++|+.|++++|+||.++||+||+||+|+.+ +||| +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4899999999 99999999999999999999999999999999999 8888 888864
Q ss_pred cccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCcee
Q 006717 294 KDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQT 373 (634)
Q Consensus 294 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~ 373 (634)
+||++++
T Consensus 64 -------------------------------------------------------------------------~~~~~~~ 70 (294)
T 1nnh_A 64 -------------------------------------------------------------------------EIYGVKM 70 (294)
T ss_dssp -------------------------------------------------------------------------EETTEEE
T ss_pred -------------------------------------------------------------------------EcCCCCE
Confidence 3688899
Q ss_pred eeccchHHHHHHHH-cccCceEEEccccccCc--CCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHhhCcc
Q 006717 374 YLTVSGRLHLESYA-CALGNVYSFGPRFRAEK--KESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSK 450 (634)
Q Consensus 374 yLtvSpQL~le~la-~g~~rVYeIgp~FRaE~--s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~~~~~ 450 (634)
||++|||+|+|+++ .|++|||+||||||+|+ ++|.||+|||||||+|++|.|++|+|+++|+|++++++.+.+.
T Consensus 71 ~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~--- 147 (294)
T 1nnh_A 71 RLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEW--- 147 (294)
T ss_dssp EECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred EeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhh---
Confidence 99999999999965 47999999999999999 8888999999999999999999999999999999999887652
Q ss_pred chhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEEEEeCCCC
Q 006717 451 DLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKA 530 (634)
Q Consensus 451 dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~PvfVtdyP~~ 530 (634)
++..++ . +. +|+|++|.||++ +||. ++|+ ++ ...+|+||+|||
T Consensus 148 ----~~~~i~--------~-~~-~~~r~~y~ea~~--------------~~g~----~~er--~~-~~~~P~~v~~~P-- 190 (294)
T 1nnh_A 148 ----TGREFP--------K-TK-RFEVFEYSEVLE--------------EFGS----DEKA--SQ-EMEEPFWIINIP-- 190 (294)
T ss_dssp ----HSSCCC--------C-CS-SCEEEEHHHHHH--------------HTSS----HHHH--HH-HCSSCEEEECCC--
T ss_pred ----hccccc--------c-CC-CceEeEHHHHHH--------------HhCC----hHhh--hh-hcCCCEEEEcCC--
Confidence 111111 1 23 399999999995 2443 4565 43 357899999999
Q ss_pred CCCCccccCCCCCceEEEEEeec-CCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCC-CcceeeccHHH
Q 006717 531 VKPFYVRLNDDGNTVAAFDMVVP-KGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTV-KHSGFSFGFDL 608 (634)
Q Consensus 531 ~kPFy~~~~~d~~~~~~fDLlvP-~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~P-PhgGfGLGiER 608 (634)
+|||++. |++++++||||++ +.+||+||++|+++++.|.++++..|++++.|+|||++++||+| |||||||||||
T Consensus 191 -~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieR 267 (294)
T 1nnh_A 191 -REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVER 267 (294)
T ss_dssp -CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHH
T ss_pred -hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHH
Confidence 9999987 7789999999996 55699999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHhcCCCCcCccccCCCCCCCCC
Q 006717 609 MVLFTTGLTDVRDAIPFPRSLGKAY 633 (634)
Q Consensus 609 Lvm~ltg~~nIRdVi~FPr~~~~~~ 633 (634)
|+|+++|.+||||||+|||+++++.
T Consensus 268 L~mll~g~~~Irdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 268 LVRFIVGAKHIAEVQPFPRIPGIPA 292 (294)
T ss_dssp HHHHHHTCSSGGGGCSSCCCTTSCC
T ss_pred HHHHHhCCCCHHHEEeccCCCCccc
Confidence 9999999999999999999999873
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.85 E-value=1.3e-22 Score=210.42 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=126.9
Q ss_pred CCceEEEEEeeeEEEecCCCCCCCCCCCCCChhhccccceeecccchhhHHHHH-----HHHHHHHHHHHHhhCCcEEee
Q 006717 186 GKHAVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRI-----RSSLTHATHTFFQNHGFLYVQ 260 (634)
Q Consensus 186 ~~q~vEL~~~~i~vlg~~~~~~yPl~kk~~~~e~lr~~rhLr~Rt~~~~av~ri-----Rs~l~~air~ff~~~gF~eV~ 260 (634)
+.|++||+|++|++||+|. .++|++++.+ ..++++||||+|++.+.+++++ |+.+.+.+|++|..+||.||.
T Consensus 23 ~~~~~ei~~~~~~vl~~a~-~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~ 99 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPK-DEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIK 99 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTT-CC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCceEEEEhhhhhhhccCC-CCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEEE
Confidence 4699999999999999996 4689987665 3499999999999999999999 999999999999999999999
Q ss_pred CCeeecCCCCCCCcceeeeccccccccCCCCcccccccchHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhh
Q 006717 261 VPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNE 340 (634)
Q Consensus 261 TPiLt~s~~EGa~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (634)
||+|++.++. +.|.++..
T Consensus 100 Tp~l~~~~~~---~~~~~~~~----------------------------------------------------------- 117 (290)
T 3qtc_A 100 SPILIPLEYI---ERMGIDND----------------------------------------------------------- 117 (290)
T ss_dssp CCSEEETHHH---HHTTCCTT-----------------------------------------------------------
T ss_pred CCceeeHHHH---HhcCCCcC-----------------------------------------------------------
Confidence 9999997532 11111100
Q ss_pred hhhhhhhhhhcccCCCcCCCcccccccccCceeeec--cchHHHHHHH--H---cccCceEEEccccccCcCCCCCcccc
Q 006717 341 LVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLT--VSGRLHLESY--A---CALGNVYSFGPRFRAEKKESSKHAAE 413 (634)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLt--vSpQL~le~l--a---~g~~rVYeIgp~FRaE~s~T~rHlpE 413 (634)
+ + ......+|+...+|+ +||||+..+. + .+..|+||||+|||+|.. +.+|++|
T Consensus 118 -------------~-p-----~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~~~E 177 (290)
T 3qtc_A 118 -------------T-E-----LSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEE 177 (290)
T ss_dssp -------------S-S-----GGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSCCSE
T ss_pred -------------C-c-----hhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcCcch
Confidence 0 0 000123567889999 9999995542 2 246899999999999976 5899999
Q ss_pred ccccchhhcCCC--HHHHHHHHHHHH
Q 006717 414 MLMVETEIAFSQ--LEDAMKCADDYF 437 (634)
Q Consensus 414 FtmLE~E~af~d--~~dlm~l~E~Li 437 (634)
|||+|+|+++.+ +.++..++++++
T Consensus 178 f~ql~~~~~g~~~~f~elkg~le~ll 203 (290)
T 3qtc_A 178 FTMLVFWQMGSGCTRENLESIITDFL 203 (290)
T ss_dssp EEEEEEEEESTTCCHHHHHHHHHHHH
T ss_pred heEEEEEEEcCChHHHHHHHHHHHHH
Confidence 999999999975 555555555544
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.83 E-value=2.5e-19 Score=185.55 Aligned_cols=228 Identities=11% Similarity=0.019 Sum_probs=178.0
Q ss_pred CceeeeccchHHHHHHH-Hc-cc---CceEEEccccccCcC-CCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHH
Q 006717 370 SRQTYLTVSGRLHLESY-AC-AL---GNVYSFGPRFRAEKK-ESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKW 443 (634)
Q Consensus 370 g~~~yLtvSpQL~le~l-a~-g~---~rVYeIgp~FRaE~s-~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~ 443 (634)
+..+-+.+|--.|+++. .. +| +.+|+..++-|.++. .+.+|.-+|.|.|||......+..|++++++++.+...
T Consensus 64 ~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ 143 (330)
T 12as_A 64 DAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAG 143 (330)
T ss_dssp TCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHH
T ss_pred CceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHH
Confidence 67789999999999984 44 68 999999999998654 67899999999999999998899999999998888776
Q ss_pred HHhhCccchhhhccccchhhhhhhccccCCCCceeeHHHHHHHHHHhcccccccccccccccChHHHHhHHhhhCCccEE
Q 006717 444 ILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVI 523 (634)
Q Consensus 444 vl~~~~~dl~~~~~~~d~~~~~~l~~~~~~pf~rity~EAi~~L~~~~~~~f~~~~~~G~dL~~e~Er~L~e~~~~~Pvf 523 (634)
+.+.- .++...+. |+..+..+|..||..|+.+.+ +..-..+-|..+++.+ +|||
T Consensus 144 ik~tE----~~~~~~y~------l~p~Lp~~i~fitsqeL~~~Y--------------P~lt~keRE~~i~ke~--gaVF 197 (330)
T 12as_A 144 IKATE----AAVSEEFG------LAPFLPDQIHFVHSQELLSRY--------------PDLDAKGRERAIAKDL--GAVF 197 (330)
T ss_dssp HHHHH----HHHHHHSC------CCCCSCSSCEEEEHHHHHHHS--------------SSSCHHHHHHHHHHHH--SEEE
T ss_pred HHHHH----HHHHHHhc------cCcCCCCceEEEeHHHHHHHc--------------CCCChHHHHHHHHHhh--CCEE
Confidence 65431 12222221 122356689999999876531 2222234566777764 8999
Q ss_pred EEeCCCCCCC--CccccC-CCCCce---------EEEEEee-c----CCeEEechhhhHHhHHHHHHHHHHcCCCccChH
Q 006717 524 VYNYPKAVKP--FYVRLN-DDGNTV---------AAFDMVV-P----KGGTVITGSQNEERIDMLNTRIKELGLPREQYE 586 (634)
Q Consensus 524 VtdyP~~~kP--Fy~~~~-~d~~~~---------~~fDLlv-P----~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~ 586 (634)
|++.|..++- ++-... +.+... ...||++ | +.+||.+++.| -+.+.|.++++..|..+....
T Consensus 198 ii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~ 276 (330)
T 12as_A 198 LVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLEL 276 (330)
T ss_dssp EECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGS
T ss_pred EEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhcc
Confidence 9999976532 232222 223455 7899999 4 47999999999 899999999999999888899
Q ss_pred HHHHHHhcCC-CCcceeeccHHHHHHHhcCCCCcCcccc
Q 006717 587 WYLDLRRHGT-VKHSGFSFGFDLMVLFTTGLTDVRDAIP 624 (634)
Q Consensus 587 wYLda~kyG~-PPhgGfGLGiERLvm~ltg~~nIRdVi~ 624 (634)
+|..++..|. |++.|.|||.+||+|+|++..+|-+|.+
T Consensus 277 ~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 277 EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp HHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred HHHHHHHcCCCCccccccccHHHHHHHHhccchhheeec
Confidence 9999998886 9999999999999999999999999976
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.66 E-value=8.2e-17 Score=167.12 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=48.5
Q ss_pred eEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcC-CCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 545 VAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHG-TVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 545 ~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG-~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
..++|+++ +|.||++|+.+.+.++. +|| .|||+|||||+|||+|+++|.+|||++.
T Consensus 218 ~~~~~l~~-~~~eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~ 274 (288)
T 3dsq_A 218 GDTVDVMK-GDLELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMA 274 (288)
T ss_dssp CCCEEEEE-TTEEEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGS
T ss_pred EEEEEEEe-CCEEEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCC
Confidence 45689999 79999999977554421 678 5899999999999999999999999986
Q ss_pred cC
Q 006717 624 PF 625 (634)
Q Consensus 624 ~F 625 (634)
..
T Consensus 275 ~~ 276 (288)
T 3dsq_A 275 RS 276 (288)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.29 E-value=3.2e-11 Score=128.36 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=48.8
Q ss_pred eeccchHHHHHHHHcc-c-CceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHH
Q 006717 374 YLTVSGRLHLESYACA-L-GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFL 440 (634)
Q Consensus 374 yLtvSpQL~le~la~g-~-~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l 440 (634)
..+.||.+. +.|..+ . -|+|+||+|||+|+.+ .+|+|||+|||++++.. |+.|++..++.+++.+
T Consensus 176 Rt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~d-~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 176 RTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQTD-ATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp CSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eccchHHHH-HHHHhcCCCeeEEEeeeEEECCCCC-CCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 334455543 445543 3 3899999999998864 67999999999999986 6888888887776554
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.18 E-value=1.1e-10 Score=121.37 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=55.6
Q ss_pred ceeeeccchHHHHHH-HHcc----cCceEEEccccccCcCCCCCccccccccchhhcC--CCHHHHHHHHHHHHHHHH
Q 006717 371 RQTYLTVSGRLHLES-YACA----LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF--SQLEDAMKCADDYFKFLC 441 (634)
Q Consensus 371 ~~~yLtvSpQL~le~-la~g----~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af--~d~~dlm~l~E~Lik~l~ 441 (634)
...+|+.|.--.+.. ++.+ --|+||||+|||+++.+ .+|+|||+|||++++. .|+.|++..+|.+++.++
T Consensus 108 e~~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d-~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 108 DEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDD-ATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp SSEEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCB-TTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CcceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCC-CCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 446787777666655 5545 67999999999998764 6799999999999998 578899888888876553
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.89 E-value=5e-09 Score=110.47 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=46.0
Q ss_pred eeeecc--chHHHHHHHHcccC--ceEEEccccccCcCCCCCccccccccchhhcC--CCHHHHHHHHHHHHHHHH
Q 006717 372 QTYLTV--SGRLHLESYACALG--NVYSFGPRFRAEKKESSKHAAEMLMVETEIAF--SQLEDAMKCADDYFKFLC 441 (634)
Q Consensus 372 ~~yLtv--SpQL~le~la~g~~--rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af--~d~~dlm~l~E~Lik~l~ 441 (634)
...|+. ||.+ ++.|..+-. |+|++|+|||++ . ..+|+|+|.|+|..+.. .|+.|+...+|.+++.++
T Consensus 163 ~~vLRThtsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lf 235 (327)
T 3pco_A 163 TRLLRTQTSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFF 235 (327)
T ss_dssp SCEECSCTHHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred CceecccCCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 345544 4443 445554433 899999999998 4 48899999999977653 356677666666665553
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.63 E-value=3.4e-07 Score=101.44 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=32.7
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcC--CCHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAF--SQLEDAMKCADD 435 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af--~d~~dlm~l~E~ 435 (634)
|+|+||+|||+|..+ .+|+|||+|+|..++. .++.|++.+++.
T Consensus 349 riFeiGrVFR~d~~D-atHlpeFhQlegl~~~~~v~f~dLKg~Le~ 393 (508)
T 3l4g_A 349 KYFSIDRVFRNETLD-ATHLAEFHQIEGVVADHGLTLGHLMGVLRE 393 (508)
T ss_dssp EEEEEEEEECCSCCC-SSSCSEEEEEEEEEEEESCCHHHHHHHHHH
T ss_pred eEEEEccEEecCCCC-CCcCCeEEEEEEEEECCCCCHHHHHHHHHH
Confidence 899999999999984 7999999999987653 234444444433
No 25
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.06 E-value=8.5e-06 Score=89.29 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
..-.-++++..|...+|+.|.+.||.||.||+|...
T Consensus 62 ~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~ 97 (458)
T 2i4l_A 62 WLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLA 97 (458)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred ECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcH
Confidence 345678999999999999999999999999999986
No 26
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.97 E-value=5.6e-06 Score=89.02 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
..-.+++..|...+++.|.++||.||.||+|...+
T Consensus 13 p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 47 (420)
T 1qe0_A 13 PEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTD 47 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHH
Confidence 45678999999999999999999999999999854
No 27
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.94 E-value=1.1e-05 Score=86.76 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.-.-.+++..|...+++.|.+.||.||.||+|...+
T Consensus 26 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 61 (401)
T 1evl_A 26 HNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 61 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 345688999999999999999999999999999863
No 28
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.91 E-value=1.8e-05 Score=86.14 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
...-.+++.+|.+.++++|.++||.||.||+|...+
T Consensus 168 ~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 203 (425)
T 2dq3_A 168 AGWGARLERALINFMLDLHTKKGYKEICPPHLVKPE 203 (425)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 356788999999999999999999999999999864
No 29
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.90 E-value=3.4e-05 Score=85.18 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC---CC------CCcceeeeccccccccCCCCcccccccchHHH
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS---EG------FSEKFQVTTLFDKREKEGPKTAKDIEGVNLDI 303 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~---EG------a~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~ 303 (634)
.-.-++++..|...+++.|.+.||.||.||+|...+- ++ +.+||.++..
T Consensus 40 lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~---------------------- 97 (477)
T 1hc7_A 40 RPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHA---------------------- 97 (477)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEE----------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECC----------------------
Confidence 3456789999999999999999999999999998752 11 2345554310
Q ss_pred HHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchH---
Q 006717 304 LKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGR--- 380 (634)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQ--- 380 (634)
..+-.+++++|+--..
T Consensus 98 -------------------------------------------------------------g~~~l~~~l~LRP~~~~~i 116 (477)
T 1hc7_A 98 -------------------------------------------------------------GGEELEEPLAVRPTSETVI 116 (477)
T ss_dssp -------------------------------------------------------------SSSEEEEEEEECSCSHHHH
T ss_pred -------------------------------------------------------------CCccCCCeEEEcCCCcHHH
Confidence 0000234567766554
Q ss_pred --HHHHHHHc--cc-CceEEEccccccCcCCCCC--ccccccccchhhcCCCHHHHHHHHHHHH
Q 006717 381 --LHLESYAC--AL-GNVYSFGPRFRAEKKESSK--HAAEMLMVETEIAFSQLEDAMKCADDYF 437 (634)
Q Consensus 381 --L~le~la~--g~-~rVYeIgp~FRaE~s~T~r--HlpEFtmLE~E~af~d~~dlm~l~E~Li 437 (634)
+|.+.+.+ .+ =|+|+||+|||+|.. +.= ..-||+|.|.|..|++.++....+..++
T Consensus 117 ~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l 179 (477)
T 1hc7_A 117 GYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRML 179 (477)
T ss_dssp HHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHH
Confidence 33333222 23 289999999999965 233 7889999999999999877766665553
No 30
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.82 E-value=5.2e-05 Score=85.04 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
..-.-.+++..|...+|+.|.+.||.||.||+|...+
T Consensus 42 ~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 78 (572)
T 2j3l_A 42 YLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAE 78 (572)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETH
T ss_pred eCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 3456789999999999999999999999999998863
No 31
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.77 E-value=0.00012 Score=77.52 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
.-.-.+++..|...+++.|...||.||.||+|...
T Consensus 32 lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~ 66 (344)
T 1z7m_A 32 TLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYT 66 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcH
Confidence 34567899999999999999999999999999875
No 32
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.76 E-value=4.8e-05 Score=83.58 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHH-hhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFF-QNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff-~~~gF~eV~TPiLt~s~ 268 (634)
..-.+++..|...+++.+ .+.||.||.||+|...+
T Consensus 61 P~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~ 96 (460)
T 3uh0_A 61 PNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 96 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHH
Confidence 466899999999999999 99999999999998753
No 33
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.75 E-value=4.3e-05 Score=87.17 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.-.-.++|+.|...+|+.|.+.||.||.||+|...+
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~ 302 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVD 302 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 346689999999999999999999999999999863
No 34
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.75 E-value=8.4e-05 Score=81.58 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC----CC-----CCcceeeeccccccccCCCCcccccccchHHHH
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS----EG-----FSEKFQVTTLFDKREKEGPKTAKDIEGVNLDIL 304 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~----EG-----a~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~ 304 (634)
-.-++++..|...+++.|...||.||.||+|...+. -| +.+||.++..
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~----------------------- 91 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHG----------------------- 91 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEES-----------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEecc-----------------------
Confidence 456789999999999999999999999999987531 11 2345554310
Q ss_pred HHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHH
Q 006717 305 KASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLE 384 (634)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le 384 (634)
+ .+-.+++++|+--..--.=
T Consensus 92 -------------------------------------------------g-----------~~~~~~~l~LRP~~~~~i~ 111 (459)
T 1nj8_A 92 -------------------------------------------------G-----------KTQLDVKLALRPTSETPIY 111 (459)
T ss_dssp -------------------------------------------------S-----------SSEEEEEEEECSSSHHHHH
T ss_pred -------------------------------------------------C-----------cccCCCeeEECCCCcHHHH
Confidence 0 0001345666655443332
Q ss_pred H-HHc---c---c-CceEEEccccccCcCCCCC--cccccc-ccchhhcCCCHHHHHHHHHHHHH
Q 006717 385 S-YAC---A---L-GNVYSFGPRFRAEKKESSK--HAAEML-MVETEIAFSQLEDAMKCADDYFK 438 (634)
Q Consensus 385 ~-la~---g---~-~rVYeIgp~FRaE~s~T~r--HlpEFt-mLE~E~af~d~~dlm~l~E~Lik 438 (634)
+ ++. . + =|+|+||+|||+|..++.- ..-||+ |.|.+..+++.++.....++++.
T Consensus 112 ~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 112 YMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAIS 176 (459)
T ss_dssp HHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHH
Confidence 2 221 1 2 2899999999999873222 677999 99999999998777666555554
No 35
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.73 E-value=0.00011 Score=79.62 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
-.-++++..|...+|+-|...||.||.||+|...+
T Consensus 17 P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 51 (434)
T 1wu7_A 17 PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLD 51 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHH
Confidence 45678999999999999999999999999998853
No 36
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.68 E-value=7.3e-05 Score=82.97 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC-CC--------CCcceeeeccccccccCCCCcccccccchHHH
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS-EG--------FSEKFQVTTLFDKREKEGPKTAKDIEGVNLDI 303 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~-EG--------a~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~ 303 (634)
...-.+++..|...+++.|.+ ||.||.||+|...+. ++ +.+||.++..
T Consensus 67 ~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~---------------------- 123 (501)
T 1nj1_A 67 MPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHG---------------------- 123 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEE----------------------
T ss_pred CccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecC----------------------
Confidence 346678999999999999999 999999999998641 11 2345544210
Q ss_pred HHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHH
Q 006717 304 LKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHL 383 (634)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~l 383 (634)
| .+-.+.+++|+--.+--+
T Consensus 124 --------------------------------------------------------g-----~~~~~~~l~LrPt~e~~i 142 (501)
T 1nj1_A 124 --------------------------------------------------------G-----LSKLQRKLALRPTSETVM 142 (501)
T ss_dssp --------------------------------------------------------T-----TEEEEEEEEECSSSHHHH
T ss_pred --------------------------------------------------------C-----CcccCCeeEEccCCCHHH
Confidence 0 000134566765554333
Q ss_pred HHH-H----c--cc-CceEEEccccccCcCCCCC--cccccc-ccchhhcCCCHHHHHHHHHHHHHH
Q 006717 384 ESY-A----C--AL-GNVYSFGPRFRAEKKESSK--HAAEML-MVETEIAFSQLEDAMKCADDYFKF 439 (634)
Q Consensus 384 e~l-a----~--g~-~rVYeIgp~FRaE~s~T~r--HlpEFt-mLE~E~af~d~~dlm~l~E~Lik~ 439 (634)
=.+ + . .+ =|+|++|+|||+|..++.= ..-||+ |.|.+..|++.++....+++++..
T Consensus 143 ~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 143 YPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp HHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 322 1 1 12 2899999999999874333 677999 999999999988877777666543
No 37
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.67 E-value=0.00011 Score=82.00 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=40.0
Q ss_pred ceEEEccccccCcCCCCC--ccccccccchhhcCCCHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSK--HAAEMLMVETEIAFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~r--HlpEFtmLE~E~af~d~~dlm~l~E~Lik~l 440 (634)
|+|++|+|||.|-+.+.= ..-||+|.|.+..|++.++..+.++.++...
T Consensus 150 rl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~ 200 (519)
T 4hvc_A 150 KLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLY 200 (519)
T ss_dssp EEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHH
Confidence 899999999999553322 6689999999999999888888887776443
No 38
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.66 E-value=0.00011 Score=78.99 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
-.-++++..|...+|+-|..+||.||.||+|...+
T Consensus 14 P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 48 (421)
T 1h4v_B 14 GKELRMHQRIVATARKVLEAAGALELVTPIFEETQ 48 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEecccccccHH
Confidence 35578999999999999999999999999998753
No 39
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.66 E-value=5.7e-05 Score=82.99 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC-CCCCc-------ceeeeccccccccCCCCcccccccchHHHH
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS-EGFSE-------KFQVTTLFDKREKEGPKTAKDIEGVNLDIL 304 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~-EGa~e-------~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~ 304 (634)
...-.+++.+|.+.+++.+.++||.||.||+|...+. ++.|. ||.+
T Consensus 189 ~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~-------------------------- 242 (455)
T 2dq0_A 189 LNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKV-------------------------- 242 (455)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBB--------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCee--------------------------
Confidence 3567889999999999999999999999999998632 12121 1111
Q ss_pred HHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHH
Q 006717 305 KASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLE 384 (634)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le 384 (634)
-+.++||.-..+..+=
T Consensus 243 ----------------------------------------------------------------~d~~l~LrPt~e~~~~ 258 (455)
T 2dq0_A 243 ----------------------------------------------------------------EDEDLYLIPTAEHPLA 258 (455)
T ss_dssp ----------------------------------------------------------------TTSSCEECSSTHHHHH
T ss_pred ----------------------------------------------------------------cCCcEEEcCcCcHHHH
Confidence 1345677766655444
Q ss_pred HHHc-------cc-CceEEEccccccCcCC------CCCccccccccchhhcCCCHHHHHHHHHHHHHHHH
Q 006717 385 SYAC-------AL-GNVYSFGPRFRAEKKE------SSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLC 441 (634)
Q Consensus 385 ~la~-------g~-~rVYeIgp~FRaE~s~------T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~ 441 (634)
.+.. .+ =|+|++|+|||+|.+. +--..-||+|+|.+ .|++-++..+..++++....
T Consensus 259 ~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~e~l~~~~ 328 (455)
T 2dq0_A 259 GMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHEKIIRNAE 328 (455)
T ss_dssp HTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHHHHHHHHH
T ss_pred HHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHHHHHHHHH
Confidence 3321 12 2899999999999862 22267899999998 67776777777777765433
No 40
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.65 E-value=9.6e-05 Score=81.26 Aligned_cols=35 Identities=9% Similarity=0.285 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
-.-.+++..|...+++.|..+||.||.||+|...+
T Consensus 43 P~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~e 77 (467)
T 4e51_A 43 PQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTP 77 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 45678999999999999999999999999998754
No 41
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.64 E-value=0.00012 Score=78.66 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
-.-++++..|...+|+-|..+||.||.||+|...+
T Consensus 15 P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 49 (423)
T 1htt_A 15 PGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP 49 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHH
Confidence 35678999999999999999999999999998753
No 42
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.59 E-value=0.00012 Score=80.49 Aligned_cols=47 Identities=13% Similarity=0.286 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC-----CCCCCc-ceeee
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD-----SEGFSE-KFQVT 279 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~-----~EGa~e-~F~Vt 279 (634)
...-+++|..|...+++.|..+||.||.||+|...+ ++...+ ||.+.
T Consensus 22 lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~ 74 (465)
T 3net_A 22 LPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLE 74 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEe
Confidence 346678899999999999999999999999983321 243456 88764
No 43
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.58 E-value=9.2e-05 Score=81.76 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC-CCC-------CcceeeeccccccccCCCCcccccccchHHHHH
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS-EGF-------SEKFQVTTLFDKREKEGPKTAKDIEGVNLDILK 305 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~-EGa-------~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~~~ 305 (634)
..-.|++.+|++.+++.+.++||.||.||.|...+. +|. .++|.|+.
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~------------------------- 236 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVID------------------------- 236 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEE-------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeC-------------------------
Confidence 577899999999999999999999999999988642 111 12333320
Q ss_pred HHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHHHH
Q 006717 306 ASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLES 385 (634)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~le~ 385 (634)
-+.+.||.-..+.-+=.
T Consensus 237 ---------------------------------------------------------------~~~~~~LipTaE~pl~~ 253 (485)
T 3qne_A 237 ---------------------------------------------------------------GEDEKYLIATSEQPISA 253 (485)
T ss_dssp ---------------------------------------------------------------TTEEEEECSSTHHHHHH
T ss_pred ---------------------------------------------------------------CCCeEEEeccccHHHHH
Confidence 02345666555554444
Q ss_pred HHcc--cC--------ceEEEccccccCcC------CCCCccccccccchhhcCCCHHHHHHHHHHHHHHH
Q 006717 386 YACA--LG--------NVYSFGPRFRAEKK------ESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 386 la~g--~~--------rVYeIgp~FRaE~s------~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l 440 (634)
|... ++ |+|++++|||+|-+ ++--..-||+|+|.+. |+.-++..+..++|+...
T Consensus 254 l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~~~ 323 (485)
T 3qne_A 254 YHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIGCS 323 (485)
T ss_dssp HTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred HHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHHHH
Confidence 4321 22 69999999999964 2223677999999986 676677777777776443
No 44
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.53 E-value=0.00025 Score=77.14 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
...-.+++.+|.+.+++.+.++||.||.||+|...+
T Consensus 162 ~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~ 197 (421)
T 1ses_A 162 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREK 197 (421)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHH
Confidence 346789999999999999999999999999998753
No 45
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.51 E-value=0.00035 Score=75.45 Aligned_cols=36 Identities=6% Similarity=0.208 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.-.-.+++..|...+++.|..+||.||.||+|...+
T Consensus 20 lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~e 55 (400)
T 3od1_A 20 LPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYE 55 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 446678999999999999999999999999997653
No 46
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.51 E-value=0.00016 Score=80.58 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC---CC------CCcceeeeccccccccCCCCcccccccchHHH
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS---EG------FSEKFQVTTLFDKREKEGPKTAKDIEGVNLDI 303 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~---EG------a~e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~ 303 (634)
...-++++..|...+++.|.+.||.||.||+|...+. ++ +-+||.++...
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g--------------------- 109 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGG--------------------- 109 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEET---------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCC---------------------
Confidence 4567899999999999999999999999999987642 11 23455543100
Q ss_pred HHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHH--
Q 006717 304 LKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRL-- 381 (634)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL-- 381 (634)
..=.+.+++|+-..+-
T Consensus 110 --------------------------------------------------------------~~~~~~~l~LrPt~e~~i 127 (518)
T 3ial_A 110 --------------------------------------------------------------LQPLEERLALRPTSETAI 127 (518)
T ss_dssp --------------------------------------------------------------TEEEEEEEEECSSSHHHH
T ss_pred --------------------------------------------------------------CcccCcceeECCCCcHHH
Confidence 0001345667554432
Q ss_pred ---HHHHHHc--ccC-ceEEEccccccCcCCCC--CccccccccchhhcCCCHHHHHHHHHHHHHHH
Q 006717 382 ---HLESYAC--ALG-NVYSFGPRFRAEKKESS--KHAAEMLMVETEIAFSQLEDAMKCADDYFKFL 440 (634)
Q Consensus 382 ---~le~la~--g~~-rVYeIgp~FRaE~s~T~--rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l 440 (634)
|...+.+ -|. |+|++|+|||+|-+.+. -+.-||+|.|.+...++.++..+.++.++...
T Consensus 128 ~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 128 YSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVI 194 (518)
T ss_dssp HHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHH
Confidence 2222211 232 89999999999954232 26789999999998789888888888777443
No 47
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.49 E-value=0.00033 Score=77.76 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCCC-CC-------CC-cceeeeccccccccCCCCcccccccchHHH
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDS-EG-------FS-EKFQVTTLFDKREKEGPKTAKDIEGVNLDI 303 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~~-EG-------a~-e~F~Vtt~~~~~~~~~~~~~~~~p~~~~~~ 303 (634)
...-.+++.+|.+.+++.+.++||.||.||.|...+. +| +. +||.++..
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~---------------------- 272 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS---------------------- 272 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT----------------------
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC----------------------
Confidence 4567899999999999999999999999999997642 11 12 44443200
Q ss_pred HHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCcCCCcccccccccCceeeeccchHHHH
Q 006717 304 LKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHL 383 (634)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ffg~~~yLtvSpQL~l 383 (634)
-+.++||.-..+..+
T Consensus 273 -----------------------------------------------------------------~~~~l~L~PTaE~~~ 287 (501)
T 1wle_A 273 -----------------------------------------------------------------RFEDLNLAGTAEVGL 287 (501)
T ss_dssp -----------------------------------------------------------------TSSSCEECSSHHHHH
T ss_pred -----------------------------------------------------------------CCCeEEECCcCcHHH
Confidence 023457766665544
Q ss_pred HHHHc-------cc-CceEEEccccccCcC-----CCCCccccccccchhhcCCCH-HHHHHHHHHHHHHHH
Q 006717 384 ESYAC-------AL-GNVYSFGPRFRAEKK-----ESSKHAAEMLMVETEIAFSQL-EDAMKCADDYFKFLC 441 (634)
Q Consensus 384 e~la~-------g~-~rVYeIgp~FRaE~s-----~T~rHlpEFtmLE~E~af~d~-~dlm~l~E~Lik~l~ 441 (634)
=.+.. -| =|+|++++|||+|-+ .+--..-||+|+|.+.--.+. ++..+..++|+....
T Consensus 288 ~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~ 359 (501)
T 1wle_A 288 AGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQM 359 (501)
T ss_dssp HHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 33322 12 289999999999965 223467899999998765554 788888888775443
No 48
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.48 E-value=0.00014 Score=83.04 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
...-.++++.|...+|+.|.+.||.||.||+|...+
T Consensus 267 lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~ 302 (642)
T 1qf6_A 267 HNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 302 (642)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHH
Confidence 446789999999999999999999999999999864
No 49
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.47 E-value=0.00023 Score=76.16 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 235 SVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 235 av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
.-.+++..|...+++.|..+||.||.||+|...
T Consensus 35 ~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~ 67 (373)
T 3rac_A 35 DFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYV 67 (373)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEEECCceeeH
Confidence 347889999999999999999999999999765
No 50
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.47 E-value=0.00013 Score=80.62 Aligned_cols=35 Identities=14% Similarity=0.350 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
..-.|++.+|++.+++.+.++||.||.||.|...+
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~ 239 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRD 239 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 56789999999999999999999999999998764
No 51
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.46 E-value=0.00083 Score=72.95 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=39.3
Q ss_pred ccCceeeeccchHHH-HHHHHcccCceEEEccccccCcCCCCCccccccccchhhcC
Q 006717 368 FFSRQTYLTVSGRLH-LESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423 (634)
Q Consensus 368 ffg~~~yLtvSpQL~-le~la~g~~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af 423 (634)
|++...-|+.+.--+ ++.|..+..|+|++|.|||.+..+ ..|.|+|.++|--.-|
T Consensus 109 yi~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~d-a~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 109 YLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQID-SQHYPIFHQLEAVRLF 164 (415)
T ss_dssp BSSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCB-TTBCSEEEEEEEEEEE
T ss_pred EecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchh-hhhhHHhcCCCcEEEE
Confidence 345666675442222 334555677999999999999885 7999999999965444
No 52
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.40 E-value=0.00036 Score=78.05 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 233 VASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 233 ~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
...-.|++.+|++.+++.+.++||.||.||.|...+
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~ 306 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREK 306 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHH
Confidence 356789999999999999999999999999998753
No 53
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.39 E-value=0.00025 Score=79.13 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=34.3
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYF 437 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Li 437 (634)
|+|++|+|||.+......|.+||+|++..+... |+.|++..+|.++
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL 254 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALL 254 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHH
Confidence 899999999987641257999999999988874 4555555554443
No 54
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.36 E-value=0.00051 Score=75.36 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
-.-.++|..|...+++.|..+||.||.||+|...+
T Consensus 40 P~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~e 74 (456)
T 3lc0_A 40 PEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEE 74 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGG
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehh
Confidence 35568999999999999999999999999998765
No 55
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.33 E-value=0.0004 Score=77.32 Aligned_cols=35 Identities=9% Similarity=0.277 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
..-.|++.+|++.+++++.++||.||.||.|...+
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~e 232 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKE 232 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchH
Confidence 46789999999999999999999999999997653
No 56
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.32 E-value=0.00035 Score=76.76 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 234 ASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
-.-.+++..|...+++.|...||.||.||+|...+
T Consensus 46 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 80 (471)
T 3a32_A 46 LGGGPIRYALAEVLAKFHARRGYYVVETPIIASTE 80 (471)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehH
Confidence 35678999999999999999999999999999864
No 57
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.19 E-value=0.00027 Score=78.80 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=41.9
Q ss_pred ceEE-EccccccCcC--CCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHHHh
Q 006717 392 NVYS-FGPRFRAEKK--ESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILE 446 (634)
Q Consensus 392 rVYe-Igp~FRaE~s--~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~vl~ 446 (634)
|+|+ +|+|||+|.. ++--+.-||+|.|.+. |.+-++..+..++++......+++
T Consensus 346 rl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ee~ee~i~~~~~~~l~ 402 (522)
T 2cja_A 346 KVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVLKCAEELHDRYMHIFND 402 (522)
T ss_dssp EEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHHHHHHHHHHHHHHHHHH
Confidence 7999 9999999943 2235789999999998 888888888888888444444443
No 58
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.08 E-value=0.0018 Score=70.32 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
..-.-+++|..|...+|+.|..+||.||.||+|...
T Consensus 23 ~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~ 58 (464)
T 4g84_A 23 YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELK 58 (464)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcH
Confidence 345678999999999999999999999999999654
No 59
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=96.94 E-value=0.0016 Score=72.30 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=47.5
Q ss_pred CceeeeccchHH-----HHHHHHc---ccC-ceEEEccccccCcCCCCC----ccccccccchhhcCCCHHHHHHHHHHH
Q 006717 370 SRQTYLTVSGRL-----HLESYAC---ALG-NVYSFGPRFRAEKKESSK----HAAEMLMVETEIAFSQLEDAMKCADDY 436 (634)
Q Consensus 370 g~~~yLtvSpQL-----~le~la~---g~~-rVYeIgp~FRaE~s~T~r----HlpEFtmLE~E~af~d~~dlm~l~E~L 436 (634)
+...||+--..- +...+.+ -+. |+|+||+|||+|-+ .+ ..-||+|.|.| .|++.++..+..+++
T Consensus 180 ~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~--pr~GL~R~REF~q~d~~-~f~~~e~~~~~~~~~ 256 (505)
T 1ati_A 180 GLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT--PRNFIFRVREFEQMEIE-YFVRPGEDEYWHRYW 256 (505)
T ss_dssp GGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS--CCTGGGSCSEEEEEEEE-EEECGGGHHHHHHHH
T ss_pred ccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCC--CCCCCCcccceEEeeEE-EEECHHHHHHHHHHH
Confidence 456787663211 2233333 242 89999999999954 23 67899999999 888887777666666
Q ss_pred HHHHHH
Q 006717 437 FKFLCK 442 (634)
Q Consensus 437 ik~l~~ 442 (634)
+.....
T Consensus 257 i~~~~~ 262 (505)
T 1ati_A 257 VEERLK 262 (505)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 60
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=96.86 E-value=0.0024 Score=70.72 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 232 ~~~av~riRs~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
..-.-+++|..|...+|+.|..+||.||.||+|...
T Consensus 76 ~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~ 111 (517)
T 4g85_A 76 YSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELK 111 (517)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcH
Confidence 445678999999999999999999999999999654
No 61
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.39 E-value=0.004 Score=65.88 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=41.7
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCCHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCK 442 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~ 442 (634)
|+-.+|+|||.|.|++--++-+|+|+|+- .|++-++..+..|+|+..+-.
T Consensus 170 r~~~~g~CFR~EaS~GL~RvhqF~kvE~v-~~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 170 RFDVAADCFRREPSKHLDRLQSFRMREYV-CIGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp EEEEEEEEECCCCCSSTTSCSEEEEEEEE-EEESHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccCCcCCCCCeeeeeeEEEEEE-EEeCHHHHHHHHHHHHHHHHH
Confidence 55669999999999888899999999984 467899999999888865543
No 62
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.31 E-value=0.034 Score=50.67 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=40.5
Q ss_pred ceEEEEEEcCcc-ceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEe
Q 006717 137 STVFLQVSDGSC-VASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIG 201 (634)
Q Consensus 137 ~l~Fl~l~Dgs~-~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg 201 (634)
...-+.|.|||| . |.|..-.+... -...+..|+.|.|.|.++.-. +...|.+..|..+.
T Consensus 48 ~~~~~~ldD~TG~~--I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~----g~~qi~~~~ir~v~ 110 (132)
T 3kdf_D 48 TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ----NKKSLVAFKIMPLE 110 (132)
T ss_dssp SEEEEEEECSSSSC--EEEEEEC---------CCCCTTCEEEEEEEEEEET----TEEEEEEEEEEECS
T ss_pred CeEEEEEECCCCCE--EEEEEEccCCCcccccccccCCCEEEEEEEEEeEC----CEEEEEEEEEEEcC
Confidence 344568999999 5 88877543221 135688999999999998643 56778888877653
No 63
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.20 E-value=0.064 Score=49.09 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=41.2
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCCC----CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEe
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLVS----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIG 201 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~~----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg 201 (634)
...-+.|.||||. |.|..-.+... -...+..|+.|.|.|.++.- .+...|.+..|..+.
T Consensus 53 ~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f----~g~~qi~~~~ir~v~ 115 (136)
T 4gop_B 53 TNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSF----QNRRSISSGHMRPVI 115 (136)
T ss_dssp SEEEEEEECSSCE--EEEEEECC--------CCSCCTTCEEEEEEEEEEE----TTEEEEEESEEEECS
T ss_pred CeEEEEEECCCCC--EEEEEecccCCcccccccccCCCCEEEEEEEEEEe----CCEEEEEEEEEEECC
Confidence 3344688999995 88877543221 13568899999999999764 356678888877653
No 64
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.07 E-value=0.022 Score=62.47 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=35.0
Q ss_pred ceEEEccccc---cCcCCC--CCccccccccchhhcCCCHHHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFR---AEKKES--SKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWI 444 (634)
Q Consensus 392 rVYeIgp~FR---aE~s~T--~rHlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~v 444 (634)
+++|||+||| ||-+-. -...-||+|.|.+. |++.++..+..+.++......+
T Consensus 165 ~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~~~~~ 221 (454)
T 1g5h_A 165 GLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRLLWW 221 (454)
T ss_dssp EEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHHHHHHHHH
Confidence 7999999999 697521 13578999999984 7888887777766665554433
No 65
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=95.75 E-value=0.02 Score=58.54 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=26.6
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|++|+|||.|.+. . -||||+++|.-..+
T Consensus 71 ~R~~y~g~vfR~e~~~-~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 71 IKVWYADFVYRYSGSD-L---VAEYQLGLEKVPRN 101 (275)
T ss_dssp EEEECCEEEEEEETTE-E---EEEEEEEEEEESCC
T ss_pred eEEEEeceEEecCCCC-C---CeeeEeCEEEecCC
Confidence 4899999999999984 3 79999999987664
No 66
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=95.21 E-value=0.037 Score=52.51 Aligned_cols=77 Identities=18% Similarity=0.090 Sum_probs=60.6
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCC----CCCCCCCCcEEEEEEEEecCCCCCCceEEEE
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS----PSKIRPIGTCLMVEGVLKQPSVQGKHAVELK 193 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~----~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~ 193 (634)
..|.|.|.|.+++. ..+...+.|.||||. .|.|++..+... ....+..|+.|.|.|.+..-. +..+|.
T Consensus 48 ~~V~IvGiVv~~~~---~~~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr----~~rqI~ 119 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI---YEGKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR----SEVELI 119 (159)
T ss_dssp CEEEEEEEEEEEEE---ETTEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSS----SSCEEE
T ss_pred EEEEEEEEEEEEEE---eCCEEEEEEecCCCC-eEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeC----CEEEEE
Confidence 57899999999987 667788899999984 588888654311 123478999999999997643 567899
Q ss_pred EeeeEEEec
Q 006717 194 VEKILHIGT 202 (634)
Q Consensus 194 ~~~i~vlg~ 202 (634)
++++.++..
T Consensus 120 ~~~i~~v~d 128 (159)
T 3kf6_A 120 AQSFEELRD 128 (159)
T ss_dssp EEEEEEECS
T ss_pred EEEEEECCC
Confidence 999998863
No 67
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=95.19 E-value=0.015 Score=66.94 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHh-hCCcEEeeCCeeecC
Q 006717 234 ASVMRIRSSLTHATHTFFQ-NHGFLYVQVPVITTT 267 (634)
Q Consensus 234 ~av~riRs~l~~air~ff~-~~gF~eV~TPiLt~s 267 (634)
-.=.++++.|...+|+.|. ..||.||.||+|+..
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 3457899999999999998 569999999999975
No 68
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=94.86 E-value=0.072 Score=46.93 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=64.1
Q ss_pred eeeecCCCCCcccccccceeeeccCCC----CCC---CceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEE
Q 006717 106 IIRVLGGSAGISNNVPLREKLEALVPK----PPP---PSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGV 178 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~R~~----~~~---G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~ 178 (634)
+..+.++... ..|.|.|||..+... +.. |.+.=+.|.|.|+. +.+++-.+.... .+..|++|.+.|.
T Consensus 5 ~~~I~dL~~~--~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~--IrvtlW~~~a~~--~l~~Gdvv~i~g~ 78 (105)
T 3dm3_A 5 TYNIGELSPG--MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGS--IRVTLWDNLTDI--DVGRGDYVRVRGY 78 (105)
T ss_dssp EECGGGCCSS--EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEE--EEEEEEGGGGGS--CCCTTCEEEEEEE
T ss_pred ceEHHHCCCC--CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCc--EEEEEECccccc--ccCCCCEEEEEEE
Confidence 4445555443 578899998876420 112 34555888999884 888865443222 6899999999999
Q ss_pred EecCCCCCCceEEEEEeeeEEEecCC
Q 006717 179 LKQPSVQGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 179 l~~~~~~~~q~vEL~~~~i~vlg~~~ 204 (634)
++... .+.+||++.+...|.+|+
T Consensus 79 vk~~~---~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 79 IREGY---YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEECT---TSSEEEEEEEEEEEECCC
T ss_pred EEEcc---CCCEEEEeCCceEEEecc
Confidence 98764 468999999999998886
No 69
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=94.62 E-value=0.073 Score=58.44 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=34.8
Q ss_pred ceEEEccccccCc--CCCCC----ccccccccchhhcCCCHHHHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEK--KESSK----HAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKW 443 (634)
Q Consensus 392 rVYeIgp~FRaE~--s~T~r----HlpEFtmLE~E~af~d~~dlm~l~E~Lik~l~~~ 443 (634)
++.+||+|||+|. + +.+ ..-||+|.|.+ -|++-++..+..+.++......
T Consensus 175 ~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~~~~~~~~~ 230 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLV-WFTPPRTSNQWLDFWLRHRLQW 230 (459)
T ss_dssp EEEEEEEEECCC-----------CCCCEEEEEEEE-EEECGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeecccccc-cCCCCcccccceeeeeEE-EEeChhHHHHHHHHHHHHHHHH
Confidence 5899999999994 3 333 45899999998 5777767667666666555443
No 70
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=94.06 E-value=0.32 Score=49.56 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=41.3
Q ss_pred ceEEEEEEcCcc-ceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEec
Q 006717 137 STVFLQVSDGSC-VASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 137 ~l~Fl~l~Dgs~-~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~ 202 (634)
...-+.|.|+|+ . |-|.+-.+... -...+..|+.|.|.|.++.-. +...|.+..|..+..
T Consensus 88 ~~~~~~L~D~TG~~--I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~----g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 88 TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ----NKKSLVAFKIMPLED 151 (270)
T ss_dssp SEEEEEEECSSSSC--EEEEEECC-------CCCCCTTCEEEEEEEEEEET----TEEEEEEEEEEECSC
T ss_pred ceEEEEEECCCCCE--EEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC----CeeEEEEEEEEecCC
Confidence 344568999998 4 78876543221 135688999999999998643 556788888776643
No 71
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=93.72 E-value=0.16 Score=44.63 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=59.0
Q ss_pred ccccccceeeeccCCC-----CCC--CceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCce
Q 006717 117 SNNVPLREKLEALVPK-----PPP--PSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHA 189 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~-----~~~--G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~ 189 (634)
++.+.+.|+|..+... +.+ +.+.++.|.|+|+. |.+.+-.+.......+..|++|.|.|.++... -.+.
T Consensus 16 g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~--I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~--f~g~ 91 (115)
T 2k50_A 16 GAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGE--LRAVFWTENIKLLKKFREGDVIRIKDVNIRGG--FGGR 91 (115)
T ss_dssp TCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEE--EEEEEETTGGGGGGTCCTTSEEEEEEEEECCC--SSSS
T ss_pred CCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCe--EEEEEeCchhhhhhcCCCCCEEEEEeeEEccc--cCCe
Confidence 4677888998887221 123 57899999999994 88887654322224689999999999986542 1467
Q ss_pred EEEEEeeeEEEecC
Q 006717 190 VELKVEKILHIGTV 203 (634)
Q Consensus 190 vEL~~~~i~vlg~~ 203 (634)
++|.+.+...+..+
T Consensus 92 ~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 92 KEAHLMPRSTVEVL 105 (115)
T ss_dssp CEEEECTTCCEEEE
T ss_pred EEEEECCCceEEEC
Confidence 88998877666555
No 72
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=93.53 E-value=0.057 Score=43.07 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=39.0
Q ss_pred HHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhh
Q 006717 305 KASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLES 347 (634)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (634)
.+.|++++..|..||.++.+++.|.+||+.|...++.++.++.
T Consensus 3 ~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~~~tg 45 (59)
T 1d2d_A 3 YDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKEKTG 45 (59)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999999988887754
No 73
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=93.27 E-value=0.1 Score=41.12 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=40.0
Q ss_pred HHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006717 302 DILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHL 345 (634)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (634)
..+.+.+++++..|..||.++..++.|.+||..|...+..++.+
T Consensus 3 ~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~~ 46 (57)
T 1fyj_A 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEK 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999877766
No 74
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=93.06 E-value=0.38 Score=41.47 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=54.6
Q ss_pred cccccceeeeccCCCCC----C---CceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceE
Q 006717 118 NNVPLREKLEALVPKPP----P---PSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAV 190 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~----~---G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~v 190 (634)
..|.|.|||..+-..+. . |.+.=+.|.|.|+. |.+++-.+.... .+..|++|.|.|.++.-. +.+
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~--I~~tlW~~~~~~--~i~~Gdvv~i~g~v~~~~----~~~ 83 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGS--IRGTLWNELADF--EVKKGDIAEVSGYVKQGY----SGL 83 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEE--EEEEEEGGGGGC--CCCTTCEEEEEEEEEEC------CE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCc--EEEEEECCcccc--ccCCCCEEEEEEEEEEcC----CeE
Confidence 57788888887652111 2 34666888999984 888765442221 589999999999987653 689
Q ss_pred EEEEeeeEEEecC
Q 006717 191 ELKVEKILHIGTV 203 (634)
Q Consensus 191 EL~~~~i~vlg~~ 203 (634)
||.+.+...+-+|
T Consensus 84 el~~g~~~~i~k~ 96 (97)
T 3e0e_A 84 EISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEECCCcEEEEC
Confidence 9999988777654
No 75
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=92.92 E-value=0.52 Score=46.87 Aligned_cols=86 Identities=23% Similarity=0.170 Sum_probs=59.2
Q ss_pred ccccccceeeeccCCCCCCC------ceEEEEEEcCccc-eeEEEEEeCCC---CCC-CCCCCCCcEEEEEEEEecCCC-
Q 006717 117 SNNVPLREKLEALVPKPPPP------STVFLQVSDGSCV-ASLQVVVESTL---VSP-SKIRPIGTCLMVEGVLKQPSV- 184 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G------~l~Fl~l~Dgs~~-~~lQvV~~~~~---~~~-~~~l~~Gs~V~V~G~l~~~~~- 184 (634)
-..|+|.|+|...+-+ ..+ ...|+.|.|+|+. ..|.|.++... ... ......|..|.|+|.+..-..
T Consensus 85 I~~V~IvG~VVg~~~k-~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~ 163 (220)
T 3kf8_A 85 VNQINIFGKIVYEQYK-EKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDS 163 (220)
T ss_dssp ECEEEEEEEEEEEEEE-CCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCS
T ss_pred cEEEEEEEEEEEEEEE-eccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccc
Confidence 3678999999999751 121 5699999999996 35777776431 111 112458999999999986421
Q ss_pred ---CCCceEEEEEeeeEEEecC
Q 006717 185 ---QGKHAVELKVEKILHIGTV 203 (634)
Q Consensus 185 ---~~~q~vEL~~~~i~vlg~~ 203 (634)
.+.-.-||+|+++.+++..
T Consensus 164 ~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 164 INVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp TTTTSCCCEEEEEEEEEEEESS
T ss_pred cccccccceEEEEEEEEEeccC
Confidence 0112469999999999864
No 76
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=91.73 E-value=0.8 Score=42.32 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=65.2
Q ss_pred hcccccceeeeeecCCC------CCcccccccceeeec--c-CCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCC
Q 006717 97 QSRIPFFRTIIRVLGGS------AGISNNVPLREKLEA--L-VPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIR 167 (634)
Q Consensus 97 qs~~~~fr~~~~v~~~~------~~~~~~V~vrGRi~~--~-R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l 167 (634)
++.+..|....++.... ...+..++|-|-|.. + |. +....+.| .|.|+.. .+.|++..-+. .+.
T Consensus 2 ~~ni~~F~tPSEi~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~-~~~~~v~F-~vtD~~~--~v~V~Y~GilP---DlF 74 (136)
T 1sr3_A 2 RSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRD-PNSLKVTF-TIYDAEG--SVDVSYEGILP---DLF 74 (136)
T ss_dssp CCSSSCCBCTTTTTSCSTTTSCCCCTTSEEEEEEEECTTTCEEC-SSSSEEEE-EEECSSC--EEEEEEESCCC---TTC
T ss_pred CCcccEEeCHHHHhcCcccccccCCCCCEEEEeeEEeCCcEEEc-CCCCEEEE-EEEeCCc--EEEEEECCCCC---ccc
Confidence 45566777777776654 345578899998883 2 32 11236777 5688865 48888876554 357
Q ss_pred CCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 168 PIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 168 ~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
+-|.-|.|+|.+... + .+.|++ ||.+|+ ++|-
T Consensus 75 rEGqgVVa~G~l~~~-----g--~F~A~e--VLAKhd-ekYm 106 (136)
T 1sr3_A 75 REGQGVVVQGELEKG-----N--HILAKE--VLAKHD-ENYT 106 (136)
T ss_dssp CTTSEEEEEEEECSS-----S--EEEESS--CBCCSC-CCCC
T ss_pred cCCCeEEEEEEECCC-----C--eEEEEE--EEecCC-CCCC
Confidence 889999999999642 2 255665 788997 5774
No 77
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.25 E-value=0.27 Score=41.41 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhccc
Q 006717 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQ 353 (634)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (634)
...+.+.|++++..|..||.++..++.|.+||..|...++.++.+..+.-..+
T Consensus 15 ~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~tg~~~~~p 67 (79)
T 2djv_A 15 IQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAP 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 56788999999999999999999999999999999999999998887654433
No 78
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.80 E-value=0.12 Score=58.59 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=47.7
Q ss_pred eeeeccc--hHHHHHH--HHc-cc--CceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHH
Q 006717 372 QTYLTVS--GRLHLES--YAC-AL--GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFL 440 (634)
Q Consensus 372 ~~yLtvS--pQL~le~--la~-g~--~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l 440 (634)
...|+.| |-|-.+. +.. +. -|+|++|+|||++..-+.+|.+||.||+.-+... |+.|+...+|.+++.+
T Consensus 199 ~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3456544 5444443 322 22 3789999999986641257999999999988774 6888888888777544
No 79
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.71 E-value=0.12 Score=58.59 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=47.8
Q ss_pred eeeeccc--hHHHHHH--HHc-cc--CceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHH
Q 006717 372 QTYLTVS--GRLHLES--YAC-AL--GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFL 440 (634)
Q Consensus 372 ~~yLtvS--pQL~le~--la~-g~--~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l 440 (634)
...|+.| |-|-.+. +.. +. -|+|++|+|||++..-+.+|.+||.||+.-+... |+.|+...+|.+++.+
T Consensus 199 ~sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3456544 5444443 322 22 3789999999986641257999999999988774 6888888888777544
No 80
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=90.67 E-value=0.12 Score=57.68 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=37.1
Q ss_pred ceEEEccccccCcC-CCCCccccccccchhhcCC--CHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKK-ESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFK 438 (634)
Q Consensus 392 rVYeIgp~FRaE~s-~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik 438 (634)
|+|++|+|||.+.. + ..|.+||.||+.-+... |+.|+...+|.+++
T Consensus 219 rlFEiGrVFr~D~~~d-~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~ 267 (549)
T 2du7_A 219 KLFSIDRCFRREQRED-RSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLA 267 (549)
T ss_dssp EEEEEEEECCCCSSCS-SSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHG
T ss_pred EEEEEeeEEecCCccc-CcCCCcceEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 89999999998764 4 46999999999988775 57787777766654
No 81
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.62 E-value=0.13 Score=58.61 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=48.4
Q ss_pred eeeeccc--hHHHHHH--HHc-cc--CceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHH
Q 006717 372 QTYLTVS--GRLHLES--YAC-AL--GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFL 440 (634)
Q Consensus 372 ~~yLtvS--pQL~le~--la~-g~--~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l 440 (634)
...|+.| |-|-.+. +.. +. -|+|++|+|||++..-+..|.+||.||+.-+... |+.|+...+|.+++.+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3456544 5444443 322 22 3789999999986641257999999999988774 6889888888887654
No 82
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.44 E-value=0.13 Score=58.55 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=48.2
Q ss_pred eeeeccc--hHHHHHH--HHc-cc--CceEEEccccccCcCCCCCccccccccchhhcCC--CHHHHHHHHHHHHHHH
Q 006717 372 QTYLTVS--GRLHLES--YAC-AL--GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFS--QLEDAMKCADDYFKFL 440 (634)
Q Consensus 372 ~~yLtvS--pQL~le~--la~-g~--~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~--d~~dlm~l~E~Lik~l 440 (634)
...|+.| |-|-.+. +.. +. -|+|++|+|||++..-+..|.+||.||+.-+... |+.|+...+|.+++.+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred cCcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3456544 5444443 322 22 3789999999986641257999999999988774 6888888888887654
No 83
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=90.14 E-value=1.4 Score=40.70 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=61.6
Q ss_pred hhcccccceeeeeecCCC------CCcccccccceeeec--c-CCCCCCCceEEEEEEc-CccceeEEEEEeCCCCCCCC
Q 006717 96 LQSRIPFFRTIIRVLGGS------AGISNNVPLREKLEA--L-VPKPPPPSTVFLQVSD-GSCVASLQVVVESTLVSPSK 165 (634)
Q Consensus 96 ~qs~~~~fr~~~~v~~~~------~~~~~~V~vrGRi~~--~-R~~~~~G~l~Fl~l~D-gs~~~~lQvV~~~~~~~~~~ 165 (634)
+++.+..|....++.... ...+..++|-|-|.. + |. +....+.|. |.| +.. .+.|++..-+. .
T Consensus 5 l~~ni~~f~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~-~~~~~v~F~-vtD~~~~--~v~V~Y~GilP---D 77 (136)
T 1j6q_A 5 LNSNLNLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRD-PNSLHVQFA-VHDSLGG--EILVTYDDLLP---D 77 (136)
T ss_dssp --CCCCCEECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEEC-TTSSCEEEE-EECTTCC--CEEEEECSCCT---T
T ss_pred hhhCccEeeCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEec-CCCCEEEEE-EEcCCCC--EEEEEECCCCC---c
Confidence 355667777777777655 345678999999863 2 32 113368884 577 654 48888876544 3
Q ss_pred CCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCC
Q 006717 166 IRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 166 ~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yP 209 (634)
+.+-|.-|.|+|.+... +. ++|++ ||.+|+ ++|-
T Consensus 78 lFrEGqgVVa~G~l~~~-----g~--F~A~e--VLaKhd-ekY~ 111 (136)
T 1j6q_A 78 LFREGQGIVAQGVLGED-----GK--LAATE--VLAKHD-ENYM 111 (136)
T ss_dssp SCCSSSEEEEEEEECST-----TS--EEEEE--EECCC------
T ss_pred cccCCCeEEEEEEECCC-----Ce--EEEEE--EEecCC-CCCC
Confidence 57889999999999642 22 55665 788997 5774
No 84
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=89.88 E-value=2.5 Score=37.08 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=56.4
Q ss_pred ccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEE-EEEecCCCCCCceEEEEEe
Q 006717 117 SNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVE-GVLKQPSVQGKHAVELKVE 195 (634)
Q Consensus 117 ~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~-G~l~~~~~~~~q~vEL~~~ 195 (634)
.+.|.+.|+|..+-..+.......+.|.|.||. |-+++-.+. ....+..|++|.|+ |.+..- ++.++|.+.
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~--I~~t~W~~~--~~~~~~~G~~V~i~n~~v~~~----~G~~~L~v~ 86 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGI--IKFTIWKNA--ELPLLEQGESYLLRSVVVGEY----NDRFQVQVN 86 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCC--EEEEEEGGG--CCCCCCTTCEEEEEEEEEEEE----TTEEEEEEC
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCe--EEEEEECcc--cccccCCCCEEEEEEEEEEEE----CCEEEEEEC
Confidence 457888888888754111234445789999996 888776522 12468999999999 666653 478999999
Q ss_pred eeEEEecCC
Q 006717 196 KILHIGTVD 204 (634)
Q Consensus 196 ~i~vlg~~~ 204 (634)
+...+...+
T Consensus 87 ~~~~I~~~~ 95 (109)
T 2kbn_A 87 KNSSIEKLS 95 (109)
T ss_dssp SSSEEEECS
T ss_pred CceEEEECC
Confidence 887776654
No 85
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=89.30 E-value=1.2 Score=52.15 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=36.2
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcC-------------CCHHHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAF-------------SQLEDAMKCADDYFKFL 440 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af-------------~d~~dlm~l~E~Lik~l 440 (634)
|+||+|+|||.+... ..| +||+++..=++. .|+.|+...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~~-~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGEG-ELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCTT-SCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCcc-cCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 899999999975432 256 999998864443 58999999998888765
No 86
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=87.79 E-value=1.3 Score=39.51 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=53.2
Q ss_pred CcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEE
Q 006717 115 GISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKV 194 (634)
Q Consensus 115 ~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~ 194 (634)
..+..|.++|+|...-. .-.. ..+|+|+- |+|-++.+.- ....++.++-|.|.|++-+.- ...||.|
T Consensus 35 ~Dd~~V~L~G~Iv~~~~---~d~Y---~F~D~TG~--I~VeId~~~w-~g~~v~p~~~Vri~GevDkd~----~~~eIdV 101 (109)
T 1nnx_A 35 RDDTWVTLRGNIVERIS---DDLY---VFKDASGT--INVDIDHKRW-NGVTVTPKDTVEIQGEVDKDW----NSVEIDV 101 (109)
T ss_dssp CSSEEEEEEEEEEEEEE---TTEE---EEEETTEE--EEEECCGGGS-TTCCCCTTSCEEEEEEEEEET----TEEEEEE
T ss_pred cCCCeEEEEEEEEEEeC---CCeE---EEECCCcc--EEEEEChhhc-CCcccCCCCEEEEEEEECCCC----CceEEEE
Confidence 34568899999998753 1233 45999984 8888776532 135688999999999998643 4568999
Q ss_pred eeeEEEe
Q 006717 195 EKILHIG 201 (634)
Q Consensus 195 ~~i~vlg 201 (634)
..|+++.
T Consensus 102 ~~i~~~~ 108 (109)
T 1nnx_A 102 KQIRKVN 108 (109)
T ss_dssp EEEEEC-
T ss_pred EEEEEcc
Confidence 9988764
No 87
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=87.62 E-value=1.6 Score=49.14 Aligned_cols=46 Identities=7% Similarity=-0.006 Sum_probs=33.7
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcC--CCHHHHHHHHHHHHH
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAF--SQLEDAMKCADDYFK 438 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af--~d~~dlm~l~E~Lik 438 (634)
|+||+|+|||.+.. ..+|.+||.++..-+.. .++.++...+|.++.
T Consensus 473 rlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~ 520 (589)
T 3l4g_B 473 KLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQ 520 (589)
T ss_dssp EEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHH
T ss_pred EEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 79999999998765 35788999999876554 247776666665543
No 88
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=87.08 E-value=1.2 Score=48.12 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=58.1
Q ss_pred ccccccceeeecc-CCCCCCCceEEEEEEcCccceeEEEEEeCCCCC---CCCCCCCCcEEEEEEEEecCCCCCCceEEE
Q 006717 117 SNNVPLREKLEAL-VPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS---PSKIRPIGTCLMVEGVLKQPSVQGKHAVEL 192 (634)
Q Consensus 117 ~~~V~vrGRi~~~-R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~---~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL 192 (634)
...|+|+|.|... +. ..|+=+|+.|.|+++. |.|++=..... ....|..||.|.|.|.++. + .|
T Consensus 284 ~~~~~v~G~V~~~P~~--~~GGHV~f~l~d~~~~--i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~------g--tL 351 (402)
T 3au7_A 284 YRSYRLRGRVTLEPYD--IEGGHVFFEIDTKFGS--VKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK------D--TI 351 (402)
T ss_dssp TCEEEEEEEEEEEEEE--ETTTEEEEEEEETTEE--EEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET------T--EE
T ss_pred CceEEEEEEEecCcEe--ccCceEEEEEEcCCCE--EEEEEEccchHHHHHHhcCCCCCEEEEEEeecC------C--EE
Confidence 3688999999987 43 3677788899998664 99988543222 3467899999999999764 2 79
Q ss_pred EEeeeEEEecC
Q 006717 193 KVEKILHIGTV 203 (634)
Q Consensus 193 ~~~~i~vlg~~ 203 (634)
.++++.+++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999999765
No 89
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=86.09 E-value=3.5 Score=36.46 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=54.8
Q ss_pred ccccceeeecc---CC-CCCCC--ceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEE-EEEecCCCCCCceEE
Q 006717 119 NVPLREKLEAL---VP-KPPPP--STVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVE-GVLKQPSVQGKHAVE 191 (634)
Q Consensus 119 ~V~vrGRi~~~---R~-~~~~G--~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~-G~l~~~~~~~~q~vE 191 (634)
.|.+.|+|..+ |. .+..| .+.=+.|.|.||. |.+.+-.+.. ..+..|++|.|. |.+..- .+.++
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~~---~~~~~G~vv~i~~g~v~~~----~g~~q 84 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKHA---GSIKEGQVVKIENAWTTAF----KGQVQ 84 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGGT---TCCCTTCEEEEEEEEEEEE----TTEEE
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECChh---hcCCCCCEEEEEeEEEEEe----CCEEE
Confidence 46677777655 20 01134 4666788999985 8887754432 357899999999 877653 47799
Q ss_pred EEEeeeEEEecCCCCCCC
Q 006717 192 LKVEKILHIGTVDHDKYP 209 (634)
Q Consensus 192 L~~~~i~vlg~~~~~~yP 209 (634)
|.+.+...+..++..++|
T Consensus 85 L~i~~~~~i~~~~~~~~~ 102 (119)
T 1o7i_A 85 LNAGSKTKIAEASEDGFP 102 (119)
T ss_dssp EEECTTCEEEECCCTTCC
T ss_pred EEECCCEEEEEcCCcCCC
Confidence 999886666665433565
No 90
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=84.73 E-value=1.1 Score=43.63 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 242 SLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 242 ~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
.+.+.+|+.|...||.||-|-.+++.+
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~ 34 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAA 34 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGG
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHH
Confidence 566789999999999999999998853
No 91
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=84.36 E-value=0.59 Score=41.38 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=64.5
Q ss_pred eeeecCCCCCcccccccceeeecc------CCCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEE-
Q 006717 106 IIRVLGGSAGISNNVPLREKLEAL------VPKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEG- 177 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~------R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G- 177 (634)
+..|.++.... ..+.|+|||..+ +.++..|++.=++|.|.+| .|++.+-.+.. .+...|..|+++.+.|
T Consensus 4 ~~~Is~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 4 IFAIEQLSPYQ-NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp BCCGGGCCTTT-CCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred eEEHHHCCCCC-CceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 44455554332 357899999853 1112246788889999998 59998865432 2445689999999995
Q ss_pred EEecCCCC---CCceEEEEEeeeEEEecCC
Q 006717 178 VLKQPSVQ---GKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 178 ~l~~~~~~---~~q~vEL~~~~i~vlg~~~ 204 (634)
.|+..... ....+||....-..+.+|.
T Consensus 81 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 81 KLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp EEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred EEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 55543211 2478999998887887774
No 92
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=81.04 E-value=0.41 Score=55.15 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhh
Q 006717 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRD 349 (634)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (634)
++.+++.+++++..|.+||.+++++++|++||+.|+++++.++.++...
T Consensus 10 l~~~~~~v~~~~~~vr~lk~~~a~~~~i~~av~~l~~~k~~~~~~~~~~ 58 (693)
T 2zt5_A 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELAL 58 (693)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4566789999999999999999999999999999999999998887643
No 93
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=80.72 E-value=2.9 Score=40.75 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhCCcEEeeCCeeecC
Q 006717 241 SSLTHATHTFFQNHGFLYVQVPVITTT 267 (634)
Q Consensus 241 s~l~~air~ff~~~gF~eV~TPiLt~s 267 (634)
..+.+.+|+.|...||.||-|-.+++.
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~ 33 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAG 33 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEG
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCH
Confidence 356788999999999999999999885
No 94
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=78.03 E-value=13 Score=32.38 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=52.7
Q ss_pred ccccceeeeccCCC--CCCCc---eEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEE-EEEecCCCCCCceEEE
Q 006717 119 NVPLREKLEALVPK--PPPPS---TVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVE-GVLKQPSVQGKHAVEL 192 (634)
Q Consensus 119 ~V~vrGRi~~~R~~--~~~G~---l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~-G~l~~~~~~~~q~vEL 192 (634)
.|.+.|+|..+-.. +..|+ +.=+.|-|.|+. |.+.+-.+. +..|++|.|. |.+..- .+.++|
T Consensus 15 ~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~~------l~~Gdvv~i~ng~v~~~----~g~~~L 82 (106)
T 2k75_A 15 YVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGKQ------LQDSDVVRIDNARVAQF----NGYLSL 82 (106)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESSC------CCTTEEEEEEEEEEEEE----TTEEEE
T ss_pred eEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcCc------cCCCCEEEEEeeEEeEE----CCEEEE
Confidence 35666666554320 01343 556677888874 666665432 8999999999 777543 478999
Q ss_pred EEeeeEEEecCCCCCCCCCC
Q 006717 193 KVEKILHIGTVDHDKYPLSR 212 (634)
Q Consensus 193 ~~~~i~vlg~~~~~~yPl~k 212 (634)
.+.+...|.+++ +.-||..
T Consensus 83 ~v~~~~~I~~~~-~~~~~~~ 101 (106)
T 2k75_A 83 SVGDSSRIESVN-VNIPLEH 101 (106)
T ss_dssp EECTTSEEEECC-SCCCCSC
T ss_pred EECCcEEEEECC-CCCcccc
Confidence 998877777765 3456543
No 95
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=77.39 E-value=2.5 Score=37.87 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=39.5
Q ss_pred EEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCCCCCCC
Q 006717 152 LQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPL 210 (634)
Q Consensus 152 lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~~~yPl 210 (634)
++||+-.+.....+.++.|+-|.|+|.|.... .....++|+++.|+.|+... ..-||
T Consensus 49 i~vv~~Gk~AE~~~~l~kGs~V~VeGrL~trs-~~G~kl~l~a~~Ie~l~~~~-~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLALLLADTPLGTEMQVQGFLAPAR-KDSVKVKLHLQQARRIAGSM-GRDPL 105 (115)
T ss_dssp EEEEEETHHHHHHTTCCTTCEEEEEEEEEESS-TTCSSEEEEEEEEEECCCSC-CC---
T ss_pred EEEEEEhHHHHhhhccCCCCEEEEEEEEEECC-CCCCEEEEEEEEEEEcCCCC-CCCCc
Confidence 78888654322225689999999999998653 22367999999999997653 34454
No 96
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=73.47 E-value=1.7 Score=44.28 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=37.8
Q ss_pred EEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCC-CCcceeeccHHHHHHHhcCCCCcCcc
Q 006717 546 AAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGT-VKHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 546 ~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~-PPhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
.+.++++ +|.||+.|-.. ++.++ ++ +|. +|...|+||+|||+|+..|.++||+.
T Consensus 222 r~a~i~~-~~~~iG~G~lh---P~vl~---~~----------------~~i~~~v~~~el~le~l~~~~~~~~dir~~ 276 (290)
T 3qtc_A 222 DTLDVMH-GDLELSSALVG---PIPLD---RE----------------WGIDKPWIGAGFGLERLLKVKHDFKNIKRA 276 (290)
T ss_dssp EEEEEEE-TTEEEEEEEES---CCGGG---GG----------------GTCCSCEEEEEEEHHHHHHHHHTCSSGGGG
T ss_pred CcccEee-CCEEEEEEEec---HHHHH---Hh----------------CCCCCceEEEEECHHHHHHHHcCCcHHHHH
Confidence 5677888 78888554322 22210 12 344 36789999999999999999999964
No 97
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=71.81 E-value=9 Score=44.68 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhCCcEEeeCCeeecCC
Q 006717 240 RSSLTHATHTFFQNHGFLYVQVPVITTTD 268 (634)
Q Consensus 240 Rs~l~~air~ff~~~gF~eV~TPiLt~s~ 268 (634)
...+.+.+|++|...||.||-|-.+++.+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~ 519 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPE 519 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTT
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHH
Confidence 45677889999999999999988888763
No 98
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=70.81 E-value=5.2 Score=48.80 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=33.8
Q ss_pred ceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEec
Q 006717 137 STVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 137 ~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~ 202 (634)
.++|+.|.|.++. +.||+-.+.. .+...+..+..|.|+|++... . .+.|.++++.-+..
T Consensus 1064 ~maf~tleD~tg~--~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~----~-~~~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1064 MMARFTLSDETGA--LEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG----E-ELRVLAQAVWTLEE 1123 (1220)
T ss_dssp ---CEEEEETTEE--EEEC-------------CTTCEEEEEEEEC----------CEEEEEEEEHHH
T ss_pred eEEEEEEEECCCC--EEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC----C-CcEEEEeeeecHHH
Confidence 6999999999996 8888765542 355678999999999999743 2 46788888875544
No 99
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=69.11 E-value=14 Score=34.55 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=49.5
Q ss_pred cccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeee
Q 006717 118 NNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKI 197 (634)
Q Consensus 118 ~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i 197 (634)
..||+.|.|.... .|. +.|.||||.-.++-+ .+...-...++.|..|.|.|.+.... .+-.|+|.++
T Consensus 59 s~VWmQG~VV~~~----~g~---~~LdDgTG~~~v~g~--~~vp~g~p~l~~G~YVMV~G~v~~~s----~eP~i~AvKm 125 (150)
T 3mxn_B 59 AAVWMQGRVVMAD----RGE---ARLRDPSGDFSVRGL--ERVPRGRPCLVPGKYVMVMGVVQACS----PEPCLQAVKM 125 (150)
T ss_dssp SEEEEEEEEEEEE----TTE---EEEEETTEEEEEECG--GGSCCCSCCCSTTCEEEEEEEEEECS----SSCEEEEEEE
T ss_pred EEEEEEeEEEEeC----CCe---EEEECCCceEEEeec--cccCCCCcccCCCCEEEEEEEEEecC----CCceEEEEEe
Confidence 5789999999973 343 578999996333221 11111123478999999999988643 3678888888
Q ss_pred EEEec
Q 006717 198 LHIGT 202 (634)
Q Consensus 198 ~vlg~ 202 (634)
.-|+.
T Consensus 126 ~DLS~ 130 (150)
T 3mxn_B 126 TDLSD 130 (150)
T ss_dssp EECCS
T ss_pred eeCCC
Confidence 87765
No 100
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=67.99 E-value=2 Score=47.01 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=22.2
Q ss_pred cccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCC
Q 006717 27 RVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
++.|+++- ...|++|+|.|||+++|.++
T Consensus 19 ~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~G 46 (456)
T 3m4p_A 19 VCNIRDAA-------GLEGKLVTFKGWAYHIRKAR 46 (456)
T ss_dssp CEECCSTT-------CCCSSEEEEEEEEEEEECCS
T ss_pred EEEhhhhh-------hcCCCEEEEEEEEEEEecCC
Confidence 45676761 24799999999999999994
No 101
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=66.56 E-value=2.6 Score=46.41 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=22.6
Q ss_pred cccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCC
Q 006717 27 RVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
++.+++|... ...|++|+|.|||.++|.++
T Consensus 23 ~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g 52 (487)
T 1eov_A 23 RVKFVDLDEA-----KDSDKEVLFRARVHNTRQQG 52 (487)
T ss_dssp CCCGGGCCTT-----TTTTCEEEEEEEEEEEEECS
T ss_pred eeEHHHhccc-----ccCCCEEEEEEEEEEeeccC
Confidence 3456666421 14799999999999999998
No 102
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=64.03 E-value=11 Score=37.76 Aligned_cols=81 Identities=22% Similarity=0.172 Sum_probs=51.0
Q ss_pred cccccceeeec---cCCCCCCC-ceEEEEE--Ec--------CccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEecC
Q 006717 118 NNVPLREKLEA---LVPKPPPP-STVFLQV--SD--------GSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQP 182 (634)
Q Consensus 118 ~~V~vrGRi~~---~R~~~~~G-~l~Fl~l--~D--------gs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~ 182 (634)
..|.|.|||.+ .|. -+.| .++-+.| +. .++ -+.|++-.... ... .|+.|+.|.|+|.|...
T Consensus 129 N~v~l~G~l~~dpe~r~-t~~G~~v~~f~lAv~~~~~g~~~~~t~--~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~ 204 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRY-TPQGTAVVRLGLAVNERRRGQEEERTH--FLEVQAWRELAEWAS-ELRKGDGLLVIGRLVND 204 (264)
T ss_dssp EEEEEEEEESSCCCCEE-CTTCCEEEEEEEEEECCC-------EE--EEEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEE-CCCCCEEEEEEEEEcCCcCCCCccccE--EEEEEEEChHHHHhh-hcCCCCEEEEEEEEEee
Confidence 57789999987 343 2234 3343333 21 233 37777754321 234 78999999999999764
Q ss_pred C----CCC-CceEEEEEeeeEEEec
Q 006717 183 S----VQG-KHAVELKVEKILHIGT 202 (634)
Q Consensus 183 ~----~~~-~q~vEL~~~~i~vlg~ 202 (634)
. .|. ...+||.|++|..|+.
T Consensus 205 ~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 205 SWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEECTTSCEEEEEEEEEEEEECCCC
T ss_pred EEECCCCCEEEEEEEEEEEEEECcc
Confidence 2 222 2458999999998864
No 103
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=63.21 E-value=9.8 Score=32.88 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=33.5
Q ss_pred EEEEEeCCCCC-CCCCCCCCcEEEEEEEEecCC--CCCCceEEEEEeeeEEEec
Q 006717 152 LQVVVESTLVS-PSKIRPIGTCLMVEGVLKQPS--VQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 152 lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~~--~~~~q~vEL~~~~i~vlg~ 202 (634)
++|++-.+... ..+.++.|+-|.|+|.|.... .|.+. .||++++|+.++.
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEEEEEEEEEC--------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHHHHHHhhCCCCCEEEEEEEEEeccCCCCCEE-EEEEEEEEEECcC
Confidence 77877654332 245689999999999998752 12234 9999999998864
No 104
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=62.46 E-value=6.2 Score=34.45 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEE
Q 006717 152 LQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHI 200 (634)
Q Consensus 152 lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vl 200 (634)
++||+-.+... ...++.|+-|.|+|.|....- ....+.|+++.|+.+
T Consensus 55 i~vv~~gk~Ae-~~~l~KG~~v~veGrL~~rs~-~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQAE-EWQYRQGDCATVEGFLAQKSR-RSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHHH-HSTTCTTCEEEEEEEEEESSS-SCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHhh-hhccCCCCEEEEEEEEEECcc-CCccEEEEEEEEEEc
Confidence 77877443222 334999999999999987653 345899999999876
No 105
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=61.60 E-value=17 Score=32.67 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=48.6
Q ss_pred CCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEE
Q 006717 112 GSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVE 191 (634)
Q Consensus 112 ~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vE 191 (634)
+....+.+|++-|||...+. .|+.+-+.-.||.. ++|.+..... ..+ +..|.|.|++... ..
T Consensus 17 L~~fvgk~VrivGkV~~~~~---~g~~~~l~s~Dg~~---Vtv~l~~p~~---~~l--~~~vEViG~V~~~-------~t 78 (121)
T 3kdf_A 17 LAQFIDKPVCFVGRLEKIHP---TGKMFILSDGEGKN---GTIELMEPLD---EEI--SGIVEVVGRVTAK-------AT 78 (121)
T ss_dssp GGGGTTCEEEEEEEEEEECT---TSSEEEEECTTSCE---EEEECSSCCS---SCC--CSEEEEEEEECTT-------SC
T ss_pred HHhhCCCeEEEEEEEEEEcC---CCCEEEEEeCCCCE---EEEEeCCCCC---ccc--CcEEEEEEEECCC-------Ce
Confidence 44456789999999999975 67766566566653 6777665321 122 4599999999632 24
Q ss_pred EEEeeeEEEec
Q 006717 192 LKVEKILHIGT 202 (634)
Q Consensus 192 L~~~~i~vlg~ 202 (634)
|.+..+.-+|.
T Consensus 79 I~~~~~~~fg~ 89 (121)
T 3kdf_A 79 ILCTSYVQFKE 89 (121)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEEecCC
Confidence 66666655554
No 106
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=61.08 E-value=8.3 Score=41.57 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=63.5
Q ss_pred eeeecCCCCCcccccccceeeecc---C---CCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEEE
Q 006717 106 IIRVLGGSAGISNNVPLREKLEAL---V---PKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEGV 178 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~---R---~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~ 178 (634)
+..|.++.... ..+.|+|||..+ | .....|++.-++|.|.+| .|++++-.+.. .+...|..|+++.+.+-
T Consensus 3 ~~~I~~L~p~~-~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 3 IYPIEGLSPYQ-NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CCCSTTCCTTC-CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred ceeHHHCCCCC-cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 34455554433 467899999853 2 101135788889999998 59999876532 25577999999999964
Q ss_pred -EecCCC---CCCceEEEEEeeeEEEecCC
Q 006717 179 -LKQPSV---QGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 179 -l~~~~~---~~~q~vEL~~~~i~vlg~~~ 204 (634)
|+.... ...+.+||....-..+.+|.
T Consensus 80 ~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~ 109 (444)
T 4gop_C 80 RVNIAKKQFSNLQNEYEITFENSTEIEECT 109 (444)
T ss_dssp EEEECCGGGCSCCCSEEEEECTTCEEEECS
T ss_pred EEEecCCccccCCCCEEEEEcCCcEEEEcc
Confidence 443321 12478999998766666664
No 107
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=59.21 E-value=21 Score=36.81 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=50.8
Q ss_pred cccccceeeec---cCCCCCCC-ceEEEEE--E----c--Cc---cceeEEEEEeCCCC-CCCCCCCCCcEEEEEEEEec
Q 006717 118 NNVPLREKLEA---LVPKPPPP-STVFLQV--S----D--GS---CVASLQVVVESTLV-SPSKIRPIGTCLMVEGVLKQ 181 (634)
Q Consensus 118 ~~V~vrGRi~~---~R~~~~~G-~l~Fl~l--~----D--gs---~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~ 181 (634)
..|.|.|||.. +|. -+.| .++-+.| + | |. ...-+.|++-.... ...+ |+.|+.|.|+|.|..
T Consensus 130 N~V~L~GrL~~dPelr~-t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~ 207 (301)
T 1se8_A 130 NEVLVLGNVTRDPEIRY-TPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVN 207 (301)
T ss_dssp EEEEEEEEECSCCEEEE-CTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEE
T ss_pred eEEEEEEEECcCCEEEE-CCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEee
Confidence 56788999987 443 1234 3333333 1 1 21 11237777754432 2346 999999999999976
Q ss_pred CC----CCC-CceEEEEEeeeEEEec
Q 006717 182 PS----VQG-KHAVELKVEKILHIGT 202 (634)
Q Consensus 182 ~~----~~~-~q~vEL~~~~i~vlg~ 202 (634)
.. .+. ...+||.|++|.+|+.
T Consensus 208 ~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 208 EGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EECC------CEEEEEEEEEEEECCC
T ss_pred eeEECCCCcEEEEEEEEEEEEEEecc
Confidence 42 121 2468999999999864
No 108
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=58.64 E-value=5.9 Score=41.43 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=24.6
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|+||++||+|... .-|.-||+|+++|.-..+
T Consensus 118 ~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 118 ARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 151 (344)
T ss_dssp EEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred eEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCC
Confidence 4899999999999874 558999999999987766
No 109
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=57.75 E-value=7.1 Score=43.38 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=26.4
Q ss_pred ccccccHHHHhhcC---CCCCCCCCcEEEEEEEEeecccCC
Q 006717 24 YSNRVLLKTILESG---DGGLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 24 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
|....+++++...- ..+....|++|+|.|||+++|.++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~g 71 (521)
T 3bju_A 31 FHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASG 71 (521)
T ss_dssp CCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESS
T ss_pred CcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCC
Confidence 44446677775421 122345688999999999999987
No 110
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=56.69 E-value=6.6 Score=38.57 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=63.0
Q ss_pred eeeecCCCCCcccccccceeeecc---C---CCCCCCceEEEEEEcCccceeEEEEEeCCCC-CCCCCCCCCcEEEEEE-
Q 006717 106 IIRVLGGSAGISNNVPLREKLEAL---V---PKPPPPSTVFLQVSDGSCVASLQVVVESTLV-SPSKIRPIGTCLMVEG- 177 (634)
Q Consensus 106 ~~~v~~~~~~~~~~V~vrGRi~~~---R---~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~-~~~~~l~~Gs~V~V~G- 177 (634)
+..+.++.... ..+.|+|||..+ | ..+..|++.-++|.|.+| .|++++-.+.. .+...|..|+++.+.+
T Consensus 8 ~~~I~~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~~~~~l~~G~vy~i~~~ 84 (246)
T 1jmc_A 8 VVPIASLTPYQ-SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKFFPLIEVNKVYYFSKG 84 (246)
T ss_dssp BCCGGGCCTTC-CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHHGGGCCTTCEEEEECC
T ss_pred eEEHHHCCCCC-CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHHHhhhhcccCCEEEECCC
Confidence 44455554332 367899999865 1 111245777788999999 59998875432 2456789999999986
Q ss_pred EEecCCC---CCCceEEEEEeeeEEEecCC
Q 006717 178 VLKQPSV---QGKHAVELKVEKILHIGTVD 204 (634)
Q Consensus 178 ~l~~~~~---~~~q~vEL~~~~i~vlg~~~ 204 (634)
.|+.... ...+.+||....-..+.+|+
T Consensus 85 ~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 85 TLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp EEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred EEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 4443311 12478999998766666664
No 111
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=56.47 E-value=4.8 Score=45.10 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=22.8
Q ss_pred cccHHHHhhcCCCCCCCCCcEEEEEEEEeecccCC
Q 006717 27 RVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVK 61 (634)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~gwv~~~r~~~ 61 (634)
++.|++|.. ..+|++|+|.|||.++|.++
T Consensus 50 ~~~i~~l~~------~~~g~~V~v~Gwv~~~R~~g 78 (548)
T 3i7f_A 50 YTEIEELVP------AMAEKTVTIRARVQAVRGKG 78 (548)
T ss_dssp BCCGGGCSG------GGTTCEEEEEEEEEEEEECS
T ss_pred eEEhhhcch------hcCCCEEEEEEEEEEEecCC
Confidence 355666642 35799999999999999987
No 112
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=54.09 E-value=6.9 Score=43.81 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.5
Q ss_pred CcceeeccHHHHHHHhcCCCCcCcc
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
|...||||+|||+|...|..+||+.
T Consensus 326 ~v~aFELgLErL~m~~~~i~dIR~~ 350 (549)
T 2du7_A 326 PVMNLGLGVERLAMIIYGYEDVRAM 350 (549)
T ss_dssp CEEEEEEBHHHHHHHHTTCSCSHHH
T ss_pred CeEEEEEeHHHHHHHhcCCCccccc
Confidence 4689999999999999999998866
No 113
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=52.39 E-value=6.3 Score=42.17 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=26.9
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
|.|++|++||.|.+. .-+.-||+|+++|.-..+
T Consensus 105 r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 105 RLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp EEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred EEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 899999999999874 557899999999987655
No 114
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=49.39 E-value=8.1 Score=43.90 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=22.1
Q ss_pred CcceeeccHHHHHHHhcCCCCcCcc
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
|...||||+|||+|...|..+||+.
T Consensus 333 ~V~AFELgLErLaml~~gi~DIR~~ 357 (648)
T 2odr_B 333 PVMNLGLGVERLAMISGNFADVREM 357 (648)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4579999999999999999988755
No 115
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=48.84 E-value=5 Score=43.73 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=25.8
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|+||+|||.|... .-+.-||+|+++|.-..+
T Consensus 124 ~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 124 AKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp EEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred EEEEEeccEEecCCCC-CCCccceEEEEEEEEcCC
Confidence 4899999999999874 457899999999987654
No 116
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=48.77 E-value=8.4 Score=43.87 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=22.1
Q ss_pred CcceeeccHHHHHHHhcCCCCcCcc
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
|...||||+|||+|...|..+||+.
T Consensus 333 ~V~AFELgLErLaml~~gi~DIR~~ 357 (665)
T 2odr_A 333 PVMNLGLGVERLAMISGNFADVREM 357 (665)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4579999999999999999988755
No 117
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=48.59 E-value=8.5 Score=43.95 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=22.1
Q ss_pred CcceeeccHHHHHHHhcCCCCcCcc
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
|...||||+|||+|...|..+||+.
T Consensus 333 ~V~AFELgLErLamlk~gi~DIR~~ 357 (685)
T 2odr_D 333 PVMNLGLGVERLAMISGNFADVREM 357 (685)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4579999999999999999988755
No 118
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=47.69 E-value=7.3 Score=42.37 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=24.5
Q ss_pred ceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 392 NVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
|.|++|||||.|... .-|.-||+|+++|.-..+
T Consensus 122 r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~ 154 (465)
T 3net_A 122 ARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGRE 154 (465)
T ss_dssp EEEECCEEECBC-------CCEEEEEEEEEECSS
T ss_pred EEEEeccEEecCCCC-CCCcceeEEeeEEEECCC
Confidence 999999999999874 557889999999987654
No 119
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=47.48 E-value=9.1 Score=43.84 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=22.1
Q ss_pred CcceeeccHHHHHHHhcCCCCcCcc
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDA 622 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdV 622 (634)
|...||||+|||+|...|..+||+.
T Consensus 333 ~V~AFELgLErLamlk~gi~DIR~~ 357 (701)
T 2odr_C 333 PVMNLGLGVERLAMISGNFADVREM 357 (701)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCHHHH
T ss_pred CEEEEEEeHHHHHHHhcCCCccccc
Confidence 4579999999999999999988755
No 120
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=46.02 E-value=23 Score=31.37 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=44.7
Q ss_pred CCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEE
Q 006717 113 SAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVEL 192 (634)
Q Consensus 113 ~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL 192 (634)
....+.+|+|-|||...+. +.+-+.=.||. .++|.+.... .+..+..|.|.|++.... +.-|...|
T Consensus 14 ~~~~g~~VrivGkV~~~~g-----~~~~l~s~d~~---~Vtv~l~~~~-----~~~~~~~vEViG~V~~~~-~~~~~~~I 79 (114)
T 4gop_A 14 GQYVGQTVRIVGKVHKVTG-----NTLLMQTSDLG---NVEIAMTPDS-----DVSSSTFVEVTGKVSDAG-SSFQANQI 79 (114)
T ss_dssp GGGTTSEEEEEEEEEEEET-----TEEEEECTTSC---EEEEECCSSC-----CGGGCSEEEEEEEECTTS-SEEEEEEE
T ss_pred HhhCCCeEEEEEEEeeeCC-----CEEEEEeCCCC---EEEEEeCCCC-----CcccCcEEEEEEEEcCCC-CcccCCeE
Confidence 3446689999999999974 44333333554 3676665432 234789999999997432 11144666
Q ss_pred EEeeeE
Q 006717 193 KVEKIL 198 (634)
Q Consensus 193 ~~~~i~ 198 (634)
.+....
T Consensus 80 ~~~~~~ 85 (114)
T 4gop_A 80 REFTTV 85 (114)
T ss_dssp EECSCC
T ss_pred EEEEEE
Confidence 665433
No 121
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=45.51 E-value=38 Score=31.35 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=54.1
Q ss_pred cccceeeeeecCCCCCcccccccceeeeccCC-------CCC---------CCceEEEEEEcCccceeEEEEEeCCCCCC
Q 006717 100 IPFFRTIIRVLGGSAGISNNVPLREKLEALVP-------KPP---------PPSTVFLQVSDGSCVASLQVVVESTLVSP 163 (634)
Q Consensus 100 ~~~fr~~~~v~~~~~~~~~~V~vrGRi~~~R~-------~~~---------~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~ 163 (634)
-+.|..+.++.++. ..|.|.|||..+-. +|. .+.++=+.|-|.|+. |-+++-.+.
T Consensus 13 kp~~~kI~dL~pg~----~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e~--- 83 (145)
T 1wjj_A 13 KPVFVKVEQLKPGT----TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQ--- 83 (145)
T ss_dssp CCSSCCSTTCCTTC----CCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTH---
T ss_pred CccceEHHHcCCCC----CceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecCC---
Confidence 34455555555443 34666666655421 111 335777788888875 655554331
Q ss_pred CCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecC
Q 006717 164 SKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTV 203 (634)
Q Consensus 164 ~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~ 203 (634)
...+..|++|.+++-...-- ++.++|.+.+.--|...
T Consensus 84 ~~~l~~Gd~v~i~na~v~~~---~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 84 VDLMKPGATVILRNSRIDMF---KGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp HHHTCTTCEEEEEEEEEEEE---TTEEEEEECTTCCBCCC
T ss_pred cCcCCCCCEEEEeccEEEeE---CCEEEEEECCCEEEEEC
Confidence 23478999999997554332 57899999865444333
No 122
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=41.57 E-value=1.7e+02 Score=25.08 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred ceEEEEEEcC---ccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEecCCC
Q 006717 137 STVFLQVSDG---SCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGTVDH 205 (634)
Q Consensus 137 ~l~Fl~l~Dg---s~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~~~~ 205 (634)
.+.| .|.|+ .. .|.|++..-+. .+++-|.-|.++|.+.... + .+.|++ ||.+|+.
T Consensus 30 ~v~F-~vtD~~~~~~--~v~V~Y~GilP---DlFrEGqgVV~~G~l~~~~----g--~F~A~e--vLaKh~e 87 (94)
T 2kct_A 30 GVRF-RLEDKDNTSK--TVWVLYKGAVP---DTFKPGVEVIIEGGLAPGE----D--TFKART--LMTKCPL 87 (94)
T ss_dssp EEEE-EEECSSCTTC--EEEEEEESCCC---TTCCTTCEEEEEEEECTTC----S--EEEEEE--EEESSCC
T ss_pred EEEE-EEEcCCCCCc--EEEEEECCCCC---ccccCCCeEEEEEEEeCCC----C--EEEEeE--EEEeCCC
Confidence 6777 56776 43 58888876554 3578899999999996411 2 255665 6778863
No 123
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=38.61 E-value=15 Score=37.36 Aligned_cols=56 Identities=9% Similarity=0.175 Sum_probs=40.2
Q ss_pred ceEEEEEeecCCeEEechhhhHHhHHHHHHHHHHcCCCccChHHHHHHHhcCCCCcceeeccHHHHHHHhcCCCCcCccc
Q 006717 544 TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623 (634)
Q Consensus 544 ~~~~fDLlvP~ggEI~gGsqRe~r~e~L~~~~~~~gl~~~~~~wYLda~kyG~PPhgGfGLGiERLvm~ltg~~nIRdVi 623 (634)
.--.+|+-+ +|+||.-= .-|++ --|++ --|..+=+--|+|||.|+|-|.+||-|..
T Consensus 135 wGLGWEVWl-dGMEITQF----TYFQQ------vGGi~-------------c~pv~~EITYGLERiamylQ~vd~vydl~ 190 (298)
T 1j5w_A 135 WGVGWEVWL-DGMEITQF----TYFQQ------IGGIS-------------LKDIPLEITYGLERIAMYLQGVDNVYEVQ 190 (298)
T ss_dssp EEEEEEEEE-TTEEEEEE----EEEEE------BTTBC-------------CSSCCEEEEEEHHHHHHHHHTCSSGGGCE
T ss_pred ccccceeeE-cceeeehh----hhhhh------cCCcc-------------cCccceeecccHHHHHHHHhCCCceeccc
Confidence 356899999 89999631 00000 12232 15778889999999999999999999875
No 124
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=38.35 E-value=16 Score=37.38 Aligned_cols=29 Identities=10% Similarity=0.393 Sum_probs=25.5
Q ss_pred CCCcceeeccHHHHHHHhcCCCCcCcccc
Q 006717 596 TVKHSGFSFGFDLMVLFTTGLTDVRDAIP 624 (634)
Q Consensus 596 ~PPhgGfGLGiERLvm~ltg~~nIRdVi~ 624 (634)
-|..+=+--|+|||.|+|-|.+||-|.+-
T Consensus 175 ~pv~~EITYGLERlamylQ~vd~vyDl~w 203 (311)
T 3rf1_A 175 DLVSAEITYGLERIAMYLQNVDNVYDIVW 203 (311)
T ss_dssp SSCCEEEEEEHHHHHHHHTTCSSGGGSEE
T ss_pred cccceeeehhHHHHHHHHhCCCeeeeccc
Confidence 47788888999999999999999998753
No 125
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=37.24 E-value=72 Score=29.37 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=44.9
Q ss_pred CCCCcccccccceeeeccCCCCCCCceEEEEEEcCccceeEEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEE
Q 006717 112 GSAGISNNVPLREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVE 191 (634)
Q Consensus 112 ~~~~~~~~V~vrGRi~~~R~~~~~G~l~Fl~l~Dgs~~~~lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vE 191 (634)
+....+++|+|-|||...-. .|+.+-+.=.||. +++|.....+. -..+..|.|.|++... + .
T Consensus 38 L~~fvGk~VriVGkV~~~~~---~G~~~~l~s~Dg~---~VtV~l~~pL~-----~~~~~~VEViG~V~~~-----~--t 99 (142)
T 2pi2_E 38 LAQFIDKPVCFVGRLEKIHP---TGKMFILSDGEGK---NGTIELMEPLD-----EEISGIVEVVGRVTAK-----A--T 99 (142)
T ss_dssp GGGSTTCEEEEEEEEEEECT---TSSEEEEECTTSC---EEEEECSSCCS-----SCCCSEEEEEEEECTT-----S--C
T ss_pred HHhhCCCEEEEEEEEeEEcC---CCCEEEEEeCCCc---EEEEEeCCCCC-----ccCCCEEEEEEEECCC-----C--c
Confidence 45556789999999999932 4565544444443 36776654221 1247799999999532 2 3
Q ss_pred EEEeeeEEEec
Q 006717 192 LKVEKILHIGT 202 (634)
Q Consensus 192 L~~~~i~vlg~ 202 (634)
|.+..+.-+|.
T Consensus 100 I~~~~~~~fGd 110 (142)
T 2pi2_E 100 ILCTSYVQFKE 110 (142)
T ss_dssp EEEEEEEECCC
T ss_pred EEEEEEEecCC
Confidence 55555555543
No 126
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=36.56 E-value=15 Score=38.81 Aligned_cols=34 Identities=21% Similarity=0.021 Sum_probs=25.0
Q ss_pred CceEEEccccccCcC------CCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKK------ESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s------~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|+||++||.|.+ . .-+.-||+|+++|.-..+
T Consensus 118 ~r~~y~g~vfR~e~~g~~~~~~-~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 118 IRWCYCERVYRRTDDPASLSWA-SGKAAESTQVGIERIGEE 157 (373)
T ss_dssp CEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred eEEEEEcceEccCCCccccccc-CCccceeEEeeeEEECCC
Confidence 589999999999976 3 347889999999986654
No 127
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=36.36 E-value=12 Score=39.93 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=24.2
Q ss_pred ceEEEccccccCcCC-CCCccccccccchhhcC
Q 006717 392 NVYSFGPRFRAEKKE-SSKHAAEMLMVETEIAF 423 (634)
Q Consensus 392 rVYeIgp~FRaE~s~-T~rHlpEFtmLE~E~af 423 (634)
|.|+||++||.|... ..-+.-||+|+++|.-.
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G 138 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG 138 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEES
T ss_pred eeEEEecceeccCCccccCccceeeecceeccC
Confidence 789999999999653 22367899999999865
No 128
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=35.29 E-value=16 Score=39.66 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=26.8
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|+||+|||+|.+. .-+.-||||+++|.-..+
T Consensus 131 ~r~~~~g~vfR~E~~~-~gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 131 KRLWYIGPMFRHERPQ-RGRYRQFHQVGVEALGFA 164 (467)
T ss_dssp EEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred EEEEEEccEEccCCCC-CCCcCceEEEEEEEEeCC
Confidence 3899999999999874 457889999999886554
No 129
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=35.09 E-value=21 Score=37.72 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.9
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|+||++||+|... .-+.-||+|+++|.-..+
T Consensus 102 ~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 102 VRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 135 (421)
T ss_pred eEEEEecCeecCCCCC-CCCcccEEEccEEEECCC
Confidence 4899999999999774 457889999999987665
No 130
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=34.61 E-value=12 Score=41.56 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=44.5
Q ss_pred CceeeeccchHH-----HHHHHHc--cc-CceEEEccccccCcCCCCC---ccccccccchhhcCCCHHHHHHHHHHHH
Q 006717 370 SRQTYLTVSGRL-----HLESYAC--AL-GNVYSFGPRFRAEKKESSK---HAAEMLMVETEIAFSQLEDAMKCADDYF 437 (634)
Q Consensus 370 g~~~yLtvSpQL-----~le~la~--g~-~rVYeIgp~FRaE~s~T~r---HlpEFtmLE~E~af~d~~dlm~l~E~Li 437 (634)
++.++|+--..- +...+.. -+ =|+|+||+|||+|.+ +.. ..-||+|.|.|.-..+-.+.....+.++
T Consensus 101 ~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~ 178 (572)
T 2j3l_A 101 DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-SRSGLLRGREFIMKDGYSFHADEASLDQSYRDYE 178 (572)
T ss_dssp CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-cccCccccceeEEeeeEEEcCCHHHHHHHHHHHH
Confidence 467788655433 3322211 12 299999999999998 322 5799999999998776666555555443
No 131
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=33.00 E-value=60 Score=32.43 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=35.2
Q ss_pred EEEEEeCCCC-CCCCCCCCCcEEEEEEEEecCC---CCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLV-SPSKIRPIGTCLMVEGVLKQPS---VQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~-~~~~~l~~Gs~V~V~G~l~~~~---~~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-.... ...+.|+.|+.|.|+|.|.... .|. ...+||.|++|.+|+..
T Consensus 54 ~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 54 HRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 6777654321 1345689999999999997642 122 35589999999998653
No 132
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=32.94 E-value=13 Score=40.18 Aligned_cols=67 Identities=19% Similarity=0.190 Sum_probs=42.2
Q ss_pred Cceeeeccch-HHHHHH---HHccc----CceEEEccccccCcCCCCC--ccccccccchhhcCCCHHHHHHHHHHH
Q 006717 370 SRQTYLTVSG-RLHLES---YACAL----GNVYSFGPRFRAEKKESSK--HAAEMLMVETEIAFSQLEDAMKCADDY 436 (634)
Q Consensus 370 g~~~yLtvSp-QL~le~---la~g~----~rVYeIgp~FRaE~s~T~r--HlpEFtmLE~E~af~d~~dlm~l~E~L 436 (634)
++.++|+... ++.... .+... -|+|+||+|||+|-.-..- +..||+|+|+|.-..+..++-.....+
T Consensus 121 ~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 121 KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKM 197 (458)
T ss_dssp CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHH
Confidence 4667777632 332222 22222 4999999999999441112 679999999999876766554444433
No 133
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=32.61 E-value=49 Score=28.79 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=34.1
Q ss_pred EEEEEeCCCCC-CCCCCCCCcEEEEEEEEecC----CCCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLVS-PSKIRPIGTCLMVEGVLKQP----SVQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~----~~~~-~q~vEL~~~~i~vlg~~ 203 (634)
++|++-..... ..+.|+.|+.|.|+|.|... +.|. ...+||.|++|.+|+..
T Consensus 52 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 77776443211 23458999999999999854 2222 25689999999998654
No 134
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=32.53 E-value=19 Score=39.50 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=24.0
Q ss_pred ceEEEccccccCcCCC-CCccccccccchhhcCC
Q 006717 392 NVYSFGPRFRAEKKES-SKHAAEMLMVETEIAFS 424 (634)
Q Consensus 392 rVYeIgp~FRaE~s~T-~rHlpEFtmLE~E~af~ 424 (634)
|.|+||++||.|.... .=+.-||||+++|.-..
T Consensus 159 k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 159 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp EEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred eeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 7899999999997521 23678999999998653
No 135
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=32.28 E-value=19 Score=38.40 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=29.1
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|+||++||+|... .-+.-||+|+++|.-..+
T Consensus 100 ~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 100 LRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp EEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred eEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 3899999999999774 457889999999987766
No 136
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=32.21 E-value=1.1e+02 Score=27.93 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=37.1
Q ss_pred EEEEEeCCCCC-CCCCCCCCcEEEEEEEEecCCCC-CCceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLVS-PSKIRPIGTCLMVEGVLKQPSVQ-GKHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~~~~-~~q~vEL~~~~i~vlg~~ 203 (634)
++||+-.+... ..+-++.|+-|.|+|.|...... ....+.+.+++|+.|+..
T Consensus 67 i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 88888765433 34568999999999999865311 123577789999988653
No 137
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=30.53 E-value=18 Score=38.32 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=29.3
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|.|+||++||+|... .-+.-||||+++|.-..+
T Consensus 102 ~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 102 QRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp EEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCC
T ss_pred eEEEEEcCEecCCCCC-CCccceeEEeeEEEECCC
Confidence 4899999999999774 557899999999987766
No 138
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=30.36 E-value=12 Score=43.31 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=25.3
Q ss_pred CcceeeccHHHHHHHhcCCCCcCccccCC
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDAIPFP 626 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdVi~FP 626 (634)
+|---|+|+|||+|++-|.+|+=|+ .|+
T Consensus 239 ~~iDtG~GlER~~~~lqg~~s~yd~-~f~ 266 (739)
T 2ztg_A 239 YIVDTGYGLERFVWASKGTPTVYDA-IFP 266 (739)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HCH
T ss_pred CeEecCcCHHHHHHHHcCCCchHHh-hHH
Confidence 5889999999999999999999998 664
No 139
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=29.63 E-value=15 Score=38.78 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=24.6
Q ss_pred CceEEEccccccCcCCCCCccccccccchhhcCCC
Q 006717 391 GNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQ 425 (634)
Q Consensus 391 ~rVYeIgp~FRaE~s~T~rHlpEFtmLE~E~af~d 425 (634)
-|+|++|+|||+|... .-+.-||+|+|+|.-..+
T Consensus 102 ~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 102 IKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp EEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred eEEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 3899999999999764 457899999999987766
No 140
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=28.56 E-value=58 Score=29.08 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=34.4
Q ss_pred EEEEEeCC-CCC-CCCCCCCCcEEEEEEEEecCC----CCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVEST-LVS-PSKIRPIGTCLMVEGVLKQPS----VQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~-~~~-~~~~l~~Gs~V~V~G~l~~~~----~~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-.+ ... ..+.|+.|+.|.|+|.|.... .|. ...+||.|++|.+|+..
T Consensus 69 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 69 HRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 66666542 211 234589999999999998652 122 35699999999998754
No 141
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=27.95 E-value=25 Score=38.45 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=35.9
Q ss_pred cCceEEEccccccCc--------CCCCCccccccccchhhcCCCH--HHHHHHHHHHHH
Q 006717 390 LGNVYSFGPRFRAEK--------KESSKHAAEMLMVETEIAFSQL--EDAMKCADDYFK 438 (634)
Q Consensus 390 ~~rVYeIgp~FRaE~--------s~T~rHlpEFtmLE~E~af~d~--~dlm~l~E~Lik 438 (634)
..|+-..-+|.|+-. ..|.||..=|-||== .+|.|| ++.+..+-+||.
T Consensus 59 ~~r~t~sQkCiRag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~LT 116 (465)
T 1yfs_A 59 YKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFVT 116 (465)
T ss_dssp CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHH
T ss_pred CCceeccccccccCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHHH
Confidence 678988999999531 238999999999865 688885 666666665553
No 142
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=27.46 E-value=62 Score=30.03 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=35.4
Q ss_pred EEEEEeCCCCC-CCCCCCCCcEEEEEEEEecC----CCCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLVS-PSKIRPIGTCLMVEGVLKQP----SVQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~----~~~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-..... ..+.|+.|+.|.|+|.|... +.+. ...+||.|++|.+|+..
T Consensus 58 i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 58 HRIAFFNRLAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEhHHHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 77777543221 23458999999999999754 2222 25689999999998654
No 143
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=27.32 E-value=52 Score=28.55 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCCCCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEE
Q 006717 152 LQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILH 199 (634)
Q Consensus 152 lQvV~~~~~~~~~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~v 199 (634)
|+||+-.+.......+..|+-|.|+|.|.... -....+=|+++.+++
T Consensus 50 i~vv~wGk~AE~~~~~~kGs~V~VeGrL~trs-~~s~~lvlhi~~~~~ 96 (101)
T 3en2_A 50 IEALGAGKMASVLDRIAPGTVLECVGFLARKH-RSSKALVFHISGLEH 96 (101)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEEEEEEEEECC-----CEEEEEEEEEE
T ss_pred EEEEEEhHHHHHHhhcCCCCEEEEEEEEEeCc-CCCCeeEEEEecccc
Confidence 78888654322222468999999999998654 234556677776654
No 144
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=27.23 E-value=82 Score=28.28 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=35.5
Q ss_pred EEEEEeCCCCC-CCCCCCCCcEEEEEEEEecC----CCCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLVS-PSKIRPIGTCLMVEGVLKQP----SVQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~----~~~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-..... ..+.|+.|+.|.|+|.|... +.+. ...+||.|++|..|+..
T Consensus 51 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 77776543211 23458999999999999764 2222 24589999999998643
No 145
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=25.12 E-value=80 Score=29.19 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=34.5
Q ss_pred EEEEEeCCCCC-CCCCCCCCcEEEEEEEEecCC----CCC-CceEEEEEeeeEEEecC
Q 006717 152 LQVVVESTLVS-PSKIRPIGTCLMVEGVLKQPS----VQG-KHAVELKVEKILHIGTV 203 (634)
Q Consensus 152 lQvV~~~~~~~-~~~~l~~Gs~V~V~G~l~~~~----~~~-~q~vEL~~~~i~vlg~~ 203 (634)
+.|++-..... ..+.|+.|+.|.|+|.|.... .|. ...+||.|++|.+|+..
T Consensus 65 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 65 FRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 77776533211 234589999999999998643 122 35689999999998653
No 146
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=24.68 E-value=18 Score=41.91 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=24.1
Q ss_pred CcceeeccHHHHHHHhcCCCCcCccccCC
Q 006717 598 KHSGFSFGFDLMVLFTTGLTDVRDAIPFP 626 (634)
Q Consensus 598 PhgGfGLGiERLvm~ltg~~nIRdVi~FP 626 (634)
||---|||+|||++.|-|.+|+=|+ .|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 3567899999999999999999888 664
No 147
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=24.57 E-value=65 Score=35.31 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhhhh
Q 006717 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHL 345 (634)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (634)
...+.+.+++++.+|..||..+..++.+.+|+..|...++..+..
T Consensus 9 ~~~~~~~i~~qg~~vr~lk~~~a~k~~i~~~v~~Ll~lk~~~k~~ 53 (477)
T 1r6t_A 9 LLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAA 53 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHhcccccccchhhHHHHHHHHHHHHHHHHh
Confidence 456678999999999999999999999999999997777766653
No 148
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=24.25 E-value=25 Score=38.17 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=34.9
Q ss_pred ccCceEEEccccccC----c----CCCCCccccccccchhhcCCCH--HHHHHHHHHHH
Q 006717 389 ALGNVYSFGPRFRAE----K----KESSKHAAEMLMVETEIAFSQL--EDAMKCADDYF 437 (634)
Q Consensus 389 g~~rVYeIgp~FRaE----~----s~T~rHlpEFtmLE~E~af~d~--~dlm~l~E~Li 437 (634)
...|+-..-+|.|+- + ..|.||..=|-||== .+|.|| ++.+..+-+|+
T Consensus 57 ~~~r~~~sQkCiR~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~L 114 (441)
T 3hy0_A 57 NYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLLL 114 (441)
T ss_dssp SCSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHH
T ss_pred CCCCccccccceecCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHHh
Confidence 367999999999972 2 237899999999854 678885 46555555544
No 149
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=22.05 E-value=1.6e+02 Score=26.22 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=40.6
Q ss_pred EEEEcCccceeEEE-EEeCCCCCC--CCCCCCCcEEEEEEEEecCCCCCCceEEEEEeeeEEEec
Q 006717 141 LQVSDGSCVASLQV-VVESTLVSP--SKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKILHIGT 202 (634)
Q Consensus 141 l~l~Dgs~~~~lQv-V~~~~~~~~--~~~l~~Gs~V~V~G~l~~~~~~~~q~vEL~~~~i~vlg~ 202 (634)
+.|+||... +|. ++....... ...|..|++|.+.=.....- + .+.--|.+.++++|..
T Consensus 47 l~lSDG~~~--~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v-~-~~k~vliIl~levl~~ 107 (123)
T 2b29_A 47 LLMSDGLNT--LSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTL-K-DGRRVVILMELEVLKS 107 (123)
T ss_dssp EEEECSSEE--EEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEEC-S-SSCEEEEEEEEEEEEC
T ss_pred EEEECcchh--eeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEe-c-CCcEEEEEEeeEEeec
Confidence 679999875 998 876554222 34689999999976644332 1 1446678889999977
No 150
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.04 E-value=1.5e+02 Score=24.03 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHHhhhhhhhhhh
Q 006717 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVS 343 (634)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (634)
..++.+.++.++..|..++....+.+.|...|..|...++.+.
T Consensus 11 ~~~i~~~i~~qg~lvR~LK~~k~~~~~I~eev~kl~~~ka~l~ 53 (73)
T 1x59_A 11 RAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLG 53 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcC
Confidence 3566789999999999999988899999999999999887763
Done!