RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006717
(634 letters)
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 332 bits (854), Expect = e-108
Identities = 64/271 (23%), Positives = 125/271 (46%), Gaps = 11/271 (4%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F +F+ YLT S +L+LES +LG + +RAE+ + +H AE L +E E+ F
Sbjct: 195 FKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPF 254
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
ED + +D + ++ + ++ + + + F+++TY +A
Sbjct: 255 ISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADA 305
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYV-RLNDDG 542
+K + E+G ++ + + DEI P+ + ++P +K FY+ ++
Sbjct: 306 IKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMSKVPGHP 364
Query: 543 NTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGF 602
+ + D+++P G ++ GS D L K GL + Y WY R++G+ H G+
Sbjct: 365 DLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGY 424
Query: 603 SFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633
G + +V++ G +R +PR L +
Sbjct: 425 GLGVERLVMWLLGEDHIRKVCLYPRYLERCE 455
Score = 136 bits (346), Expect = 5e-35
Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 13/156 (8%)
Query: 139 VFLQVSDGSCVASLQVVVESTLVSPSKIR---PIGTCLMVEGVLKQ-------PSVQGKH 188
+F+++ DGS Q V+ + + L + G L P +
Sbjct: 50 IFVELRDGSGY--CQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADIL 107
Query: 189 AVELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATH 248
+E++V + IG D + K + + H R+ V+++RS +
Sbjct: 108 NLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFR 167
Query: 249 TFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDK 284
++ ++ F +Q P I T EG S F++ F++
Sbjct: 168 KYYHDNHFTEIQPPTIVKTQCEGGSTLFKL-QYFNE 202
Score = 30.3 bits (69), Expect = 2.3
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 11/56 (19%)
Query: 8 IALTTTTATPVTLTWRYSNRVLLKTILESGDGGLGLVNERVVIGGWVKTSKEVKKE 63
+T T TPV I ++ L + V GW ++ +K
Sbjct: 4 SMMTEATTTPVETPIV-------CNIRDAAG----LEGKLVTFKGWAYHIRKARKT 48
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 325 bits (835), Expect = e-105
Identities = 97/272 (35%), Positives = 144/272 (52%), Gaps = 14/272 (5%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F +F + YL+ S +L+LE+ L V+S P FRAEK + +H E +E E A+
Sbjct: 174 FKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAW 233
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
L D MK ++ ++ + LE K++E + L+ F +I+Y EA
Sbjct: 234 MDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDD-----LTTLK-NTEPPFPRISYDEA 287
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLN-DDG 542
+ L+ + EWG L A+ L +E + RP VY YPK +K FY++ + +D
Sbjct: 288 IDILQSKGVNV-----EWGDDLGADEERVLTEE-FDRPFFVYGYPKHIKAFYMKEDPNDP 341
Query: 543 NTVAAFDMVVPKG-GTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSG 601
V A DM+ P+G G +I GSQ E+ D L RI E G+ + YEWYLDLRR+G+V HSG
Sbjct: 342 RKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSG 401
Query: 602 FSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633
F G + +V + L +R A FPR+ + Y
Sbjct: 402 FGLGVERLVAWVLKLDHIRWAALFPRTPARLY 433
Score = 138 bits (349), Expect = 2e-35
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 139 VFLQVSDGSCVASLQVVVESTLVSPSKIRPI-----GTCLMVEGVLKQPSVQGKHAVELK 193
+FL + D + + +Q VV +V + ++VEG++K + E+
Sbjct: 35 IFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVK-ADERAPGGAEVH 91
Query: 194 VEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQN 253
VEK+ I V P + ++ ++L D H RT +++M+++ +L A +
Sbjct: 92 VEKLEVIQAVSEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151
Query: 254 HGFLYVQVPVITTTDSEGFSEKFQVTTLFDK 284
G+ V P++ T EG + F++ FDK
Sbjct: 152 DGWHEVFPPILVTGAVEGGATLFKL-KYFDK 181
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 322 bits (827), Expect = e-104
Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 14/274 (5%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F+ D+F Q++LT S +L+LE+ LG+V+ +RAEK + +H AE VE E F
Sbjct: 171 FNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPF 230
Query: 424 SQLEDAMKCADDYFKFLCKWILEDC--SKDLEFVSKRIDMTCIDRLQSVISSSFEKITYT 481
L+D M+ ++ +L D K LE ++ + F ++ Y
Sbjct: 231 ITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ---------PPERPFLRMEYK 281
Query: 482 EAVKALEK-VTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYV-RLN 539
+A+K L++ E F +G + ++ D I +P+++ +P +K FY+ R
Sbjct: 282 DAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDA 340
Query: 540 DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKH 599
D + D+++P G ++ GS + D L+ K + + + Y WYLD R +GT H
Sbjct: 341 QDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPH 400
Query: 600 SGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKAY 633
G+ G + + + T +RD +PR +G+
Sbjct: 401 GGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCV 434
Score = 139 bits (352), Expect = 6e-36
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 10/152 (6%)
Query: 139 VFLQVSDGSCVASLQVVVESTLVSPSKIR--PIGTCLMVEGVLKQPSVQGKHA---VELK 193
+F + DG+ LQV++ L + + G +K +GK A EL
Sbjct: 31 MFFILRDGTGF--LQVLLMDKLCQTYDALTVNTECTVEIYGAIK-EVPEGKEAPNGHELI 87
Query: 194 VEKILHIGTVDHDK-YPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQ 252
+ IG + + +D + D+ H R A+++R+R++ T A F
Sbjct: 88 ADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFY 147
Query: 253 NHGFLYVQVPVITTTDSEGFSEKFQVTTLFDK 284
N G++ V P + T EG S F + F +
Sbjct: 148 NAGYVEVAPPTLVQTQVEGGSTLFNL-DYFGE 178
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 298 bits (766), Expect = 3e-97
Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 48/291 (16%)
Query: 347 SRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLE-SYACALGNVYSFGPRFRAEKK 405
L + + + LT S LH + + A L ++ P R E +
Sbjct: 44 PITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESR 103
Query: 406 ES--SKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTC 463
+ +HA E ++ E+ +++ED M+ + L + E ++ +
Sbjct: 104 QKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKR------ 157
Query: 464 IDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVI 523
FE Y+E ++ E+G A + P
Sbjct: 158 -----------FEVFEYSEVLE--------------EFGSDEKASQE-------MEEPFW 185
Query: 524 VYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKG-GTVITGSQNEERIDMLNTRIKELGLPR 582
+ N P+ FY R D +D+++P G G V +G + E + + +I++ GL
Sbjct: 186 IINIPR---EFYDREVDG--FWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNE 240
Query: 583 EQYEWYLDLRRHGTVK-HSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLGKA 632
+ + YL++ + G +K +G G + +V F G + + PFPR G
Sbjct: 241 DSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIP 291
Score = 76.5 bits (189), Expect = 2e-15
Identities = 7/68 (10%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 224 AHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT----DSEGFSEKFQVT 279
+ ++ + I++ + FF GF ++ +I+ + E +
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 280 TL--FDKR 285
+ + +
Sbjct: 62 EVEIYGVK 69
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 280 bits (718), Expect = 4e-88
Identities = 60/264 (22%), Positives = 128/264 (48%), Gaps = 14/264 (5%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F +F ++ +L S +L+ E A + V+ P +RAE+ ++ H AE + ++ E+AF
Sbjct: 173 FPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAF 232
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
+ D M+ + + K I E+ ++L+ ++ + +++ YTEA
Sbjct: 233 ADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---------EVKIPIKRLKYTEA 283
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGN 543
++ L I ++G + L L +E+ + + ++P +PFY + +
Sbjct: 284 IEILRSKGYNI-----KFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENP 338
Query: 544 TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVKHSGFS 603
++ ++ K +++GS + ++L +K+ GL E +E++L +G H+GF
Sbjct: 339 ELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFG 398
Query: 604 FGFDLMVLFTTGLTDVRDAIPFPR 627
G +++ TG+ V++ +PFPR
Sbjct: 399 MGLARLMVMLTGIQSVKEIVPFPR 422
Score = 109 bits (276), Expect = 6e-26
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 9/145 (6%)
Query: 139 VFLQVSDGSCVASLQVVVESTLVSPSKIR--PIGTCLMVEGVLKQPSVQGKHAVELKVEK 196
F+ + D + + QVVV+ + + + + V G++K + +EL E+
Sbjct: 35 KFIILRDKTGL--GQVVVDKNSSAFGISQELTQESVIQVRGIVKADK-RAPRGIELHAEE 91
Query: 197 ILHIGTVDHDKYPLS---RKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQN 253
I + PL + + +D R + +V++I+S A
Sbjct: 92 ITLLSKAKAP-LPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYK 150
Query: 254 HGFLYVQVPVITTTDSEGFSEKFQV 278
GF+ + P I + +EG ++ F V
Sbjct: 151 EGFIEIFTPKIIASATEGGAQLFPV 175
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 275 bits (705), Expect = 4e-86
Identities = 71/271 (26%), Positives = 125/271 (46%), Gaps = 22/271 (8%)
Query: 364 FSEDFFSRQTYLTVSGRLHLE-SYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIA 422
F +F +L S +L+ + A L VY P FRAE+ +++H E +++E+A
Sbjct: 176 FPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235
Query: 423 FSQ-LEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYT 481
F + E+ M + ++ E +K+L+ ++ ++ F +++Y
Sbjct: 236 FIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE---------EPKLPFPRVSYD 286
Query: 482 EAVKALEKVTEKIFETKLEWGVALTAEHLSYLAD----EIYKRPVIVYNYPKAVKPFYV- 536
+A++ L + ++I WG + E L +Y YP KPFY+
Sbjct: 287 KALEILGDLGKEI-----PWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIM 341
Query: 537 RLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGT 596
+ ++ AFD+ G + +G Q E R D+L +IKE GL E +E+YL R+G
Sbjct: 342 KYDNKPEICRAFDLEYR-GVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGM 400
Query: 597 VKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
H GF G + ++ L ++R+ I FPR
Sbjct: 401 PPHGGFGLGAERLIKQMLDLPNIREVILFPR 431
Score = 114 bits (289), Expect = 2e-27
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
Query: 139 VFLQVSDGSCVASLQVVVESTLVSPSKIR-----PIGTCLMVEGVLKQPSVQGKHAVELK 193
FL + D + +Q+ V P + + VEGV+ + K E+
Sbjct: 35 KFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP-KAKLGFEIL 91
Query: 194 VEKILHIGTVDHDKYPLS---RKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTF 250
EKI+ + + PL + + +D D+ R V ++ +IRSS+ A F
Sbjct: 92 PEKIVVLNRAETP-LPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDF 150
Query: 251 FQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKR 285
F +GF+ + P I T +EG +E F + F++
Sbjct: 151 FHENGFIEIHTPKIIATATEGGTELFPM-KYFEED 184
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 262 bits (673), Expect = 1e-81
Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 22/269 (8%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F D+F ++ YL S +L+ + VY P +R E+ +S+H E L ++ E+ F
Sbjct: 164 FGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223
Query: 424 -SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTE 482
+ ED M+ + + + L ++ + ++T+ E
Sbjct: 224 IADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFPQDIPRLTHAE 274
Query: 483 AVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKR----PVIVYNYPKAVKPFYVRL 538
A + L++ E G L+ E L + +R + V YP++V+PFY
Sbjct: 275 AKRILKE------ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYP 328
Query: 539 NDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVK 598
+D T +FD++ G + +G Q R + L +K G+ E + YL++ ++G
Sbjct: 329 EED-GTTRSFDLLFR-GLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPP 386
Query: 599 HSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
H GF+ G + + GL +VR A FPR
Sbjct: 387 HGGFAIGAERLTQKLLGLPNVRYARAFPR 415
Score = 104 bits (261), Expect = 5e-24
Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Query: 139 VFLQVSDGSCVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVEKIL 198
FL + D S V +QVV K+ + L V G++ + + + +E++ +++
Sbjct: 32 QFLLLRDRSGV--VQVVTGG-----LKLPLPESALRVRGLVVENA-KAPGGLEVQAKEVE 83
Query: 199 HIGTVDHD---KYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHG 255
+ + P R D L + + R + ++++++L +
Sbjct: 84 VLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQD 143
Query: 256 FLYVQVPVITTTDSEGFSEKFQV 278
F + P + +EG S F V
Sbjct: 144 FTEIFTPKVVRAGAEGGSGLFGV 166
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 255 bits (653), Expect = 2e-77
Identities = 93/516 (18%), Positives = 173/516 (33%), Gaps = 82/516 (15%)
Query: 139 VFLQVSDGS----CVASLQVVVESTLVSPSKIRPIGTCLMVEGVLKQPSVQGK----HAV 190
VFL + G + + V + + + G++K + V
Sbjct: 81 VFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDV 140
Query: 191 ELKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTF 250
E+ V I L+ LPM + + + ++ +
Sbjct: 141 EIHVTSI--------AVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDN 192
Query: 251 FQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKE 310
E S + V D R LD
Sbjct: 193 EGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTR---------------LD-------- 229
Query: 311 KSNKVEELKRSESN-----REALIAAVQDLRKTNELVSHLESRD-------KLLQAPSVK 358
N++ +L+ + + A ++ L S+ KL+ S
Sbjct: 230 --NRMLDLRTVTNIAIFRIQSACCGLFRE---------FLTSQKFVEIHTPKLIGCSSEG 278
Query: 359 TDKVNFSEDFFSRQTYLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESSKHAAEMLMV 417
+ F +F R+ YL S +L+ + V+ GP FRAE + +H E +
Sbjct: 279 GSNI-FEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGL 337
Query: 418 ETEIAF-SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFE 476
+ E+ + + + F F+ I + +L+ + K+ + +I F
Sbjct: 338 DIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYP------FEDLIYRPFL 391
Query: 477 KITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKR----PVIVYNYPKAVK 532
++TY EA++ L E I T L + I + I+ +P A++
Sbjct: 392 RLTYKEAIEMLRASGETI-----GDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIR 446
Query: 533 PFYV-RLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDL 591
PFY DD N ++D+ V G + +G+Q + L R E G+ + Y++
Sbjct: 447 PFYTMPDIDDPNYSNSYDVFVR-GQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIES 505
Query: 592 RRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
R G+ H+G G + + + G+ ++R FPR
Sbjct: 506 FRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPR 541
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 244 bits (626), Expect = 4e-74
Identities = 62/273 (22%), Positives = 118/273 (43%), Gaps = 18/273 (6%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIA 422
F +F + YL S + + + A VY GP FRAE + +H E ++ E+A
Sbjct: 217 FEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMA 276
Query: 423 F-SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYT 481
F + + + F F+ + + + ++E V K+ ++ + ++TY
Sbjct: 277 FEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYK 333
Query: 482 EAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEI---YKRPV-IVYNYPKAVKPFYVR 537
E ++ L ++I L+ E+ +L + Y I+ +P ++PFY
Sbjct: 334 EGIEMLRAAGKEI-----GDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTM 388
Query: 538 LN-DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQ--YEWYLDLRRH 594
+ + ++D + G +++G+Q +L R+K GL E + Y D +
Sbjct: 389 PDPANPKYSNSYDFFMR-GEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSY 447
Query: 595 GTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
G H+G G + +V+F L ++R A FPR
Sbjct: 448 GCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 480
Score = 93.1 bits (232), Expect = 3e-20
Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 30/167 (17%)
Query: 139 VFLQVSDGSCVASLQVVVESTL---VSPSKIR-----PIGTCLMVEGVLKQPSVQ----G 186
FL + + +Q +V++ +S + ++ + + ++V G++K+
Sbjct: 56 AFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113
Query: 187 KHAVELKVEKILHIGTVDHDKYPLSRKR---------------LPMDMLRDSAHFRPRTT 231
+E+ + KI I P+ + + +D D RT
Sbjct: 114 VQNLEIHITKIYTISETPEA-LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTV 172
Query: 232 TVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQV 278
T ++ RI++ + + F V P + SEG S F+V
Sbjct: 173 TNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-09
Identities = 83/619 (13%), Positives = 171/619 (27%), Gaps = 207/619 (33%)
Query: 88 KDVSCVEILQSRIPFFRTIIRVLGGSAGISNNVPLREKLEALVPKPPPPSTVF-----LQ 142
+ C ++ ++I+ +E+++ ++ S L
Sbjct: 31 DNFDCKDVQD----MPKSILS--------------KEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 143 VSDGSCVASLQVVVEST-------LVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVELKVE 195
V Q VE L+SP K +QPS+ + +E + +
Sbjct: 73 SKQEEMV---QKFVEEVLRINYKFLMSPIKTEQ-----------RQPSMMTRMYIE-QRD 117
Query: 196 KILHIGTVDHDKYPLSRKRLPMDMLRDSA-HFRP-------------RTTTVASVMRIRS 241
+ L+ KY +SR + P LR + RP +T V
Sbjct: 118 R-LYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--- 172
Query: 242 SLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQ-VTTLFDKREKEGPKTAKDIEGVN 300
++ F ++ + + ++ E Q + D + +I+ +
Sbjct: 173 --SYKVQCKMDFKIF-WLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIK-LR 226
Query: 301 LDILKASIKEKSNKVEELKRSESNREALI--AAVQDLR---------KTNELVSHLESRD 349
+ ++A ++ L +S+ L+ VQ+ + K L++ +R
Sbjct: 227 IHSIQAELRR-------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLT---TRF 274
Query: 350 KLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSK 409
K V TD ++ + + L+ ++ L E
Sbjct: 275 K-----QV-TDFLSA-----------ATTTHISLDHHSMTL------------TPDEV-- 303
Query: 410 HAAEMLMVETEIAFSQL-EDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQ 468
+L+ + L + + I E L D+L
Sbjct: 304 --KSLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLA-TWDNWKHVNCDKLT 356
Query: 469 SVISSSFEKITYTEAVKALE---------KVTEKIFETKLEWGVALTAE----------- 508
++I SS + E K + + + L W + ++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS--LIWFDVIKSDVMVVVNKLHKY 414
Query: 509 --------------HLSYL------ADEIYKRPVIV--YNYPKAVKPFYVRLNDDGNTVA 546
YL +E IV YN PK +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 547 AFDMVVPKGGTVI----TGSQNEERIDMLNTRIKELGLPREQYEWYLDLR-RHGTVKHSG 601
+ I ++ ER+ + +LD R ++H
Sbjct: 475 SH----------IGHHLKNIEHPERMTLFR-------------MVFLDFRFLEQKIRHDS 511
Query: 602 FSFGFDLMVLFTTGLTDVR 620
++ +L T L ++
Sbjct: 512 TAWNASGSILNT--LQQLK 528
Score = 56.0 bits (134), Expect = 3e-08
Identities = 34/225 (15%), Positives = 79/225 (35%), Gaps = 39/225 (17%)
Query: 419 TEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDM--TCIDRLQSVISSSFE 476
E+ +E+ ++ +Y K+++ + S M DRL + + F
Sbjct: 76 EEMVQKFVEEVLR--INY-----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFA 127
Query: 477 KITYTEAVKALEKVTEKIFETKLEWGVALTAEH------LSYLADEIYKRPVIVYNYPKA 530
K + ++ K+ + + E + V + +++A ++ +
Sbjct: 128 KYNVSR-LQPYLKLRQALLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 531 VKPFYVRLNDDGNTVAAFDM-------VVPKGGTVITGSQNEE-RIDMLNTRIKELGLPR 582
+ F++ L + + +M + P + S N + RI + ++ L L
Sbjct: 184 I--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKS 240
Query: 583 EQYEWYL----DLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAI 623
+ YE L +++ +F +L TT V D +
Sbjct: 241 KPYENCLLVLLNVQNAKAWN----AFNLSCKILLTTRFKQVTDFL 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 8e-09
Identities = 84/478 (17%), Positives = 142/478 (29%), Gaps = 156/478 (32%)
Query: 65 MPPPPADFAGDAAAKSSKE------------KEKEKDVSCVEILQSRIPFFRTIIRVLGG 112
+P P FA D + E E K ++L + F L G
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--CYLEG 98
Query: 113 S------AGISNNVP---------LREKLEA--LVPKP---PPPSTVFLQVSDGS----- 147
+ A + ++ + A + +P S +F V +G+
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 148 ----------CVASLQVVVES--TLVSPSKIRPIGTCLMVEGVLKQPSVQGKHAVE-LKV 194
L+ + ++ LV I+ L +++ K + L +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAETL--SELIRTTLDAEKVFTQGLNI 215
Query: 195 EKILHIGTVDHDKY-----PLSRKRLPMDMLRDSAHFRPRTTTVASVM-----RIRSSLT 244
+ L + DK P+S P+ + AH+ A ++ +RS L
Sbjct: 216 LEWLENPSNTPDKDYLLSIPIS---CPLIGVIQLAHY----VVTAKLLGFTPGELRSYLK 268
Query: 245 HATHTFFQNHGFLYVQVPVITTTDS-EGFSEKFQ--VTTLF------------------- 282
AT H V I TDS E F + +T LF
Sbjct: 269 GAT-----GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 283 --DKREK-EGPKT---AKDIEGVNLDILKASIKEKSNKVEELKRSESNREALI----AAV 332
D E EG + + I + + ++ + K+N L + +L+ V
Sbjct: 324 LEDSLENNEGVPSPMLS--ISNLTQEQVQDYV-NKTNS--HLPAGKQVEISLVNGAKNLV 378
Query: 333 -----QDLRKTNELVSHLESRDKLLQAPSVKTD--KVNFSE---DFFSRQTYLTVSGRLH 382
Q L L L +APS D ++ FSE F +R +L V+ H
Sbjct: 379 VSGPPQSLYG---LNLTLRK----AKAPS-GLDQSRIPFSERKLKFSNR--FLPVASPFH 428
Query: 383 ---LESY----------------ACALG-NVYSF--GPRFRAEKKESSKHAAEMLMVE 418
L A + VY G R S+ + ++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 55.8 bits (134), Expect = 4e-08
Identities = 82/519 (15%), Positives = 146/519 (28%), Gaps = 163/519 (31%)
Query: 2 AASQ-------------EEIALTTTTATPVTLTWRY----SNRV----------LLKTIL 34
ASQ E A TP L ++ S+ V +L L
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 35 ---ES----------------GDGGLGLVNERVVIGGWVKTSKEVKKEPMPPPPADFAGD 75
E+ + LV + +I ++ K+ +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 76 AAAKSSK-----------EKEKEKDVSCVEILQSRIPFFRTIIRVLGGSAGISNNVPLRE 124
+++ + E L+ + ++ L + E
Sbjct: 149 VGEGNAQLVAIFGGQGNTD-------DYFEELRDLYQTYHVLVGDLIKFSA--------E 193
Query: 125 KLEALVPKPPPPSTVFLQVSD-----------------GSCVASL------Q-----VVV 156
L L+ VF Q + S S Q V
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 157 ESTLVSPSKIRPI--GTCLMVEGVL------KQPSVQGKHAVELKVEKIL-HIGTVDHDK 207
+ +P ++R G +G++ + S + K +L IG ++
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 208 YPLSRKRLPMDMLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT 267
YP LP +L DS V S M S+++ T Q++ + T
Sbjct: 314 YP--NTSLPPSILEDSL---ENNEGVPSPM---LSISNLTQEQVQDY---------VNKT 356
Query: 268 DSEGFSEKFQVT-TLFDKREK---EGPKTAKDIEGVNLDI--LKASIKEKSNKVEELKR- 320
+S + K QV +L + + GP + + G+NL + KA +++ +R
Sbjct: 357 NSHLPAGK-QVEISLVNGAKNLVVSGP--PQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 321 ---------------SESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKT----DK 361
S A +DL K N + + +Q P T D
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD-----IQIPVYDTFDGSDL 468
Query: 362 VNFSEDFFSRQTYLTVSGRLHLESYACALG--NVYSFGP 398
S R + + E+ ++ FGP
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWET-TTQFKATHILDFGP 506
Score = 52.0 bits (124), Expect = 6e-07
Identities = 89/606 (14%), Positives = 170/606 (28%), Gaps = 238/606 (39%)
Query: 112 GSAGISNNVP---------LREKLEALVPKPPPPSTVFLQVSDGSCVASLQVVVE----- 157
GS VP L+E+ ++P P+ F + + A L V +
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILP---EPTEGFAADDEPTTPAEL--VGKFLGYV 68
Query: 158 STLVSPSKIRPIGTCLMV------EGVLKQPSVQGKHAVELKVEKILHIGTVDHDKYPLS 211
S+LV PSK+ L + L+ + HA+ K+L ++D +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---HAL---AAKLLQ----ENDTTLVK 118
Query: 212 RKRLPMDMLRDSAHFRPRTTTVASVMRIRSS--LTHATHTFFQNHGFLYV----QVPVIT 265
K L ++ + R + +S + + L Q
Sbjct: 119 TKEL----IK--NYITARIMAKRPFDKKSNSALFRAVG----EGNAQLVAIFGGQ----- 163
Query: 266 TTDSEGFSEKFQVTTLFDK-RE--KEGPKTAKDIEGVNLDILKASIKEKSNKVEELKRSE 322
G ++ + F++ R+ + D+ IK + + EL R+
Sbjct: 164 -----GNTDDY-----FEELRDLYQTYHVLVGDL-----------IKFSAETLSELIRTT 202
Query: 323 SNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVS---- 378
+ E + ++ + L+ PS D +D+ + +S
Sbjct: 203 LDAEKVFTQGLNIL-------------EWLENPSNTPD-----KDYLL---SIPISCPLI 241
Query: 379 GRLHLESYACALGNVYSFGP-RFRAEKKESSKHAAEMLMVETEIAFSQ-LEDAMKCADDY 436
G + L Y + F P R+ K ++ H+ ++ IA + E
Sbjct: 242 GVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVTA-VAIAETDSWESFFVSVRKA 299
Query: 437 FKFLCKWI-----------------LEDCSK---------------DLEFVSKRIDMTCI 464
L +I LED + E V ++ T
Sbjct: 300 ITVLF-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN- 357
Query: 465 DRLQS---------------VIS----------SSFEK-----------ITYTE------ 482
L + V+S + K I ++E
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 483 ----AVKA------LEKVTEKIFETKLEWGVALTAEHLS---Y----------------- 512
V + L ++ I + ++ V+ A+ + Y
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 513 -LADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDML 571
+ D I + PV + + + F P GG + +L
Sbjct: 478 RIVDCIIRLPV---KWETTTQ-------FKATHILDFG---P-GGA--------SGLGVL 515
Query: 572 NTRIKE 577
R K+
Sbjct: 516 THRNKD 521
Score = 51.6 bits (123), Expect = 9e-07
Identities = 81/515 (15%), Positives = 146/515 (28%), Gaps = 187/515 (36%)
Query: 167 RPI----GTCLMVEGVLKQPSVQGKHAVELKVE--KILHIGT--VDHDKYPLSRKRLPMD 218
RP+ G+ +E VL P+ A +L+ + KIL T D P + L
Sbjct: 7 RPLTLSHGS---LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 219 MLRDSAHFRPRTTTVASVMRIRSSLTHATHTFFQN---HGFLYVQVPVITTTDSEGFSEK 275
L + + + LT + + + H ++ T K
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-AKLLQENDTTLV--KTK 120
Query: 276 FQVTTLFDKREKEGPKTAKDIEGVNLDILKASIKEKSNKV--------------EEL--- 318
+ R K L ++ E + ++ EEL
Sbjct: 121 ELIKNYITARIMAKRPFDKKSN----SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 319 -KRSESNREALI-AAVQDLRKTNELVSHLESRDKL----------LQAPSVKTDKVNFSE 366
+ LI + + L +EL+ +K+ L+ PS D +
Sbjct: 177 YQTYHVLVGDLIKFSAETL---SELIRTTLDAEKVFTQGLNILEWLENPSNTPD-----K 228
Query: 367 DFFSRQTYLTVS----GRLHLESYACALGNVYSFGP-RFRAEKKESSKHAAEMLMVETEI 421
D+ + +S G + L Y + F P R+ K ++ H+ ++ +
Sbjct: 229 DYLL---SIPISCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVTA---V 281
Query: 422 AFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYT 481
A ++ D W SF +
Sbjct: 282 AIAE-------TDS-------W-----------------------------ESF----FV 294
Query: 482 EAVKALEKVTEKIFETKLEW-GVALTAEHLSYLADEIYKRPVIVYNYPK-AVKPFYVRLN 539
KA+ + F + GV Y A YP ++ P + +
Sbjct: 295 SVRKAITVL----F-----FIGVR------CYEA------------YPNTSLPPSILEDS 327
Query: 540 -DDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLD-LRRHG-T 596
++ V + P ML+ L +EQ + Y++ H
Sbjct: 328 LENNEGVPS-----P----------------MLSIS----NLTQEQVQDYVNKTNSHLPA 362
Query: 597 VKHSGFSF--GFDLMVLFTTGLTDVRDAIPFPRSL 629
K S G +V+ +G P+SL
Sbjct: 363 GKQVEISLVNGAKNLVV--SG---------PPQSL 386
Score = 42.7 bits (100), Expect = 5e-04
Identities = 57/322 (17%), Positives = 95/322 (29%), Gaps = 129/322 (40%)
Query: 257 LYVQVPVI---------TTTDSEGFS-------EKFQVTTLFD----KREKEGP-----K 291
LY D+ GFS +T F KR +E +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 292 TAKDIEGVNLDILKASIKEKSNKV------EELKRSESNREAL----IAAVQDLRKTNEL 341
T D + I K I E S L ++ + AL AA +DL+
Sbjct: 1695 TIVDGKLKTEKIFK-EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-- 1751
Query: 342 VSHLESRDKLLQAPSVKTDKVNFSEDFFSRQTYLTVSGRLH-L-ESYA--CALGNVYSFG 397
L+ A + +G H L E YA +L +V S
Sbjct: 1752 ---------LIPADAT-------------------FAG--HSLGE-YAALASLADVMSIE 1780
Query: 398 P-----RFR-------AEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWIL 445
+R + E + M IA + A + + +++ + +
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGM------IAINPGRVAASFSQEALQYVVERVG 1834
Query: 446 EDCSKDLEFV-----SKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTE-------- 492
+ +E V ++ Q V + ++AL+ VT
Sbjct: 1835 KRTGWLVEIVNYNVENQ----------QYVAAGD---------LRALDTVTNVLNFIKLQ 1875
Query: 493 KIFETKLEWGVALTAE----HL 510
KI +L+ +L+ E HL
Sbjct: 1876 KIDIIELQ--KSLSLEEVEGHL 1895
Score = 36.6 bits (84), Expect = 0.029
Identities = 45/252 (17%), Positives = 80/252 (31%), Gaps = 98/252 (38%)
Query: 6 EEIALTTTTATPVTLTWRYSNRVLLKT------ILESGDGGLGLVNERVVIGGWVKTSKE 59
+EI +T+ T+R +L T + L+ + ++
Sbjct: 1708 KEINEHSTS-----YTFRSEKGLLSATQFTQPALT--------LME--KAA--F----ED 1746
Query: 60 VKKEPMPPPPADFAG------DA-AAKSSKEKEKEKDV----SCVEILQSRIPFFRTIIR 108
+K + + P A FAG A A+ + DV S VE++ F+R
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLA--------DVMSIESLVEVV-----FYR---- 1789
Query: 109 VLGGSAGISNNVPLREKLE------ALVPKPPPPSTVFLQVSDGSCVASLQVVVESTLVS 162
G + VP E A+ P +V+ +LQ VVE
Sbjct: 1790 ---GMT-MQVAVPRDELGRSNYGMIAINPG---------RVAASFSQEALQYVVERVGKR 1836
Query: 163 PSKIRPIGTCLMVEGV-LKQPSVQ----G-KHAVELKVEKILHIGTVDHDKYPLSRKRLP 216
+ VE V + Q G A++ V +L + + +++
Sbjct: 1837 TGWL--------VEIVNYNVENQQYVAAGDLRALD-TVTNVL--------NF-IKLQKID 1878
Query: 217 MDMLRDSAHFRP 228
+ L+ S
Sbjct: 1879 IIELQKSLSLEE 1890
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 37.5 bits (88), Expect = 0.013
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 547 AFDMV---VPKGGTVITGSQNEERI---DMLNTRIKELGLPREQYE----WYLDLRRHGT 596
A+DMV GG GS RI DM T LG+ E+ + LD ++GT
Sbjct: 473 AYDMVINGYEVGG----GSV---RIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGT 525
Query: 597 VKHSGFSFGFDLMVLFTTGLTDVRDAIPFP 626
H+G +FG D + + TG ++RD I FP
Sbjct: 526 PPHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555
Score = 33.6 bits (78), Expect = 0.23
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 227 RPRTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEG 271
RP +A ++ R+ +T F +HGFL ++ P++T EG
Sbjct: 131 RPE---MAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEG 172
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 37.5 bits (88), Expect = 0.014
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 547 AFDMV---VPKGGTVITGSQNEERI---DMLNTRIKELGLPREQYE----WYLDLRRHGT 596
A+D+V V GG GS RI + + LG+ E+ ++L+ +G
Sbjct: 467 AYDLVLNGVEVGG----GSI---RIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGA 519
Query: 597 VKHSGFSFGFDLMVLFTTGLTDVRDAIPFP 626
H G ++G D ++ TG +R+ I FP
Sbjct: 520 PPHGGIAWGLDRLLALMTGSPSIREVIAFP 549
Score = 33.6 bits (78), Expect = 0.22
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEG 271
R + +R+R + A F GF+ V+ P +T + EG
Sbjct: 136 RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEG 178
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 36.3 bits (85), Expect = 0.028
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 34/160 (21%)
Query: 393 VYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDL 452
V+ FR E S +H E M+E +A++ D ++ + F+ L + +L + +
Sbjct: 254 VFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVL--GTTKV 310
Query: 453 EFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFE--TKLEWGVALTAEH- 509
+ D FEK+T EA+K + E + AL
Sbjct: 311 TYGEHVFDFG----------KPFEKLTMREAIK--KYRPETDMADLDNFDAAKALAESIG 358
Query: 510 --------LSYLADEIYKR--------PVIVYNYPKAVKP 533
L + EI+ P + YP V P
Sbjct: 359 ITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSP 398
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 36.2 bits (83), Expect = 0.034
Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKTD 360
L L+ +++++ + V +LK ++ + + AV +L+ LE+++ LQ D
Sbjct: 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELK---ARKRVLEAKELALQPKDDIVD 66
Query: 361 KVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGP 398
+ ED R+ + + ++ + +Y FGP
Sbjct: 67 RAKM-EDTLKRRFFYDQAFAIY-----GGVSGLYDFGP 98
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 35.2 bits (82), Expect = 0.064
Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Query: 393 VYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDL 452
VY G FR E S++H E M+E A++ D MK ++ + +L + +
Sbjct: 245 VYEIGRVFRNEGI-STRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVL--GTTKI 301
Query: 453 EFVSKRIDMTCIDRLQSVISSSFEKITYTEAVK-------ALEKVTEKIFETKLEWGVAL 505
++ +D+T + ++ +A+K + E+ E E GV +
Sbjct: 302 QYGEHLVDLT----------PEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEV 351
Query: 506 TAEH-LSYLADEIYKR--------PVIVYNYPKAVKP 533
++ +E +++ P +Y +P + P
Sbjct: 352 APHMTFGHIVNEFFEQKVEDKLIQPTFIYGHPVEISP 388
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 33.7 bits (78), Expect = 0.20
Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 40/165 (24%)
Query: 393 VYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDL 452
V+ FR E S +H E M+E A++ M + + L + +
Sbjct: 275 VFEINRNFRNEGV-SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDAL--GTATI 331
Query: 453 EFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKL---EWGVALTAEH 509
++ + +D+ F ++T T+A++ K + +L + +
Sbjct: 332 QYQGRELDLA----------QPFHRLTITQAIQ---KYAPSYTDGQLSDDAFLRSELKRL 378
Query: 510 -------------LSYLADEIYKR--------PVIVYNYPKAVKP 533
+ L +++ P + +YP V P
Sbjct: 379 GVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSP 423
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 29.3 bits (65), Expect = 0.66
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 300 NLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQAPSVKT 359
+ L + ++ N V ELK ++++ + A V L + ++ E + +AP K
Sbjct: 14 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKP--PEAPKGKK 71
Query: 360 DK 361
K
Sbjct: 72 KK 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.77
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 10/28 (35%)
Query: 333 QDLRKTNELVSHLESRDKLL---QAPSV 357
Q L+K L++ KL AP++
Sbjct: 20 QALKK-------LQASLKLYADDSAPAL 40
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 27.2 bits (60), Expect = 2.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 303 ILKASIKEKSNKVEELKRSESNREALIAAVQDL 335
++ I + V +LK ++ + + AV+ L
Sbjct: 1 MVYDKIAAQGEVVRKLKAEKAPKAKVTEAVECL 33
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase;
1.70A {Aeropyrum pernix} PDB: 3p1z_A
Length = 190
Score = 29.6 bits (66), Expect = 2.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 574 RIKELGLPREQYEWYLDLRRHGTVKHSGFSFGF 606
I LGL + Y DLRR G G G
Sbjct: 95 VIAGLGLSLDTALVYFDLRRKGRKPLVGVRRGT 127
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 29.9 bits (68), Expect = 3.2
Identities = 6/54 (11%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 301 LDILKASIKEKSNKVEELKRSESNREALIAAVQDLRKTNELVSHLESRDKLLQA 354
++ L+ + + ++ + ++ + L+A +++ + + LE+ + L+
Sbjct: 47 INRLRHERNKIAVEIGKRRKKGEPVDELLAKSREI---VKRIGELENEVEELKK 97
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 26.8 bits (59), Expect = 3.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 304 LKASIKEKSNKVEELKRSESNREALIAAVQDL 335
L + + + V ELK ++ +E + AAV+ L
Sbjct: 5 LYNRVAVQGDVVRELKAKKAPKEDVDAAVKQL 36
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 29.2 bits (65), Expect = 4.6
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 98 SRIPFFRTIIRVLGG--SA-GISNNVPLREK 125
+ F + IR+LGG SA +S + K
Sbjct: 163 VDVNLFESTIRILGGLLSAYHLSGDSLFLRK 193
>1r0v_A ENDA, tRNA-intron endonuclease, intron endonuclease; RNA splicing,
X-RAY crystallography, translati hydrolase; 2.00A
{Archaeoglobus fulgidus} SCOP: c.52.2.1 c.52.2.1
d.75.1.1 PDB: 1r11_A 1rlv_A 2gjw_A* 3p1y_A
Length = 305
Score = 28.5 bits (63), Expect = 6.4
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 7/145 (4%)
Query: 469 SVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYP 528
I+ E+ F + E L +A + VI
Sbjct: 105 EEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGEQKEELPEIAGVLSDEYVITKQTE 164
Query: 529 KAVKPFYVRLNDDG---NTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQY 585
+ FY D + + + ++ G + + EE + + +Y
Sbjct: 165 IFSRYFYGSEKGDLVTLSLIESL-YLLDLGKLNLLNADREELVKRAREVERNF---DRRY 220
Query: 586 EWYLDLRRHGTVKHSGFSFGFDLMV 610
E Y +L+ G V +GF FG + V
Sbjct: 221 EVYRNLKERGFVVKTGFKFGSEFRV 245
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.7 bits (65), Expect = 6.4
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 299 VNLDILKASIKEKSNKVEELKRSESNREALIAAVQDLRK 337
+LD + ++ + +++ + + LIA + L
Sbjct: 47 FDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSN 85
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
conformations, modulation of activity, glycoprot
glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
{Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A*
1kkt_A* 1kre_A* 1krf_A*
Length = 475
Score = 28.8 bits (64), Expect = 6.6
Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 98 SRIPFFRTIIRVLGG--SA 114
+ F T IR L G S
Sbjct: 81 DTVSLFETTIRYLAGMLSG 99
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 28.5 bits (64), Expect = 7.6
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 314 KVEELKRSESNREALIAAVQDLRKTNELVSHL 345
V+ L ++E + + +L + V HL
Sbjct: 296 IVQGLSIDAFSQERINVTLNELLEEQNGVQHL 327
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 28.1 bits (63), Expect = 8.1
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 314 KVEELKRSESNREALIAAVQDLRKTNELVSHL 345
VE L ++ +RE + ++L + E
Sbjct: 298 IVEGLPINDFSREKMDLTAKELAEEKETAFEF 329
>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease,
hydrolase, nuclease, tRNA processing, hydrolase-RNA
binding protein complex; 2.11A {Nanoarchaeum equitans}
Length = 154
Score = 27.3 bits (60), Expect = 9.6
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 582 REQYEWYLDLRRHGTVKHSGFSFGFDLMV 610
+Y+ Y +LR G + FG D V
Sbjct: 57 LIRYKAYKELRDKGYTLGTALKFGADFRV 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,566,391
Number of extensions: 592369
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1505
Number of HSP's successfully gapped: 61
Length of query: 634
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 535
Effective length of database: 3,937,614
Effective search space: 2106623490
Effective search space used: 2106623490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)