RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 006717
(634 letters)
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 142 bits (358), Expect = 2e-38
Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 22/268 (8%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
F D+F ++ YL S +L+ + VY P +R E+ +S+H E L ++ E+ F
Sbjct: 54 FGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 113
Query: 424 SQ-LEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTE 482
ED M+ + + + L ++ + ++T+ E
Sbjct: 114 IADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS---------FPQDIPRLTHAE 164
Query: 483 AVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKR----PVIVYNYPKAVKPFYVRL 538
A + L++ E G L+ E L + +R + V YP++V+PFY
Sbjct: 165 AKRILKE------ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYP 218
Query: 539 NDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYLDLRRHGTVK 598
+DG T + ++ +G + +G Q R + L +K G+ E + YL++ ++G
Sbjct: 219 EEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPP 276
Query: 599 HSGFSFGFDLMVLFTTGLTDVRDAIPFP 626
H GF+ G + + GL +VR A FP
Sbjct: 277 HGGFAIGAERLTQKLLGLPNVRYARAFP 304
Score = 55.9 bits (134), Expect = 5e-09
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTL 281
R + ++++++L + F + P + +EG S F V
Sbjct: 7 RGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYF 59
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 137 bits (345), Expect = 3e-36
Identities = 68/348 (19%), Positives = 127/348 (36%), Gaps = 40/348 (11%)
Query: 315 VEELKRSESNREALIAAVQ-----------DLRKTNELVSHLESRDKLLQAPSVKTDKVN 363
+E+ RSE+ EA V DLR T + + + +
Sbjct: 4 LEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKK 62
Query: 364 FSE--------------------DFFSRQTYLTVSGRL-HLESYACALGNVYSFGPRFRA 402
F+E +F + YL S + + VY GP FRA
Sbjct: 63 FTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 122
Query: 403 EKKESSKHAAEMLMVETEIAF-SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDM 461
E + +H E ++ E+AF + + + F F+ + + + ++E V K+ +
Sbjct: 123 ENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPV 182
Query: 462 TCIDRLQSVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRP 521
+ ++TY E ++ L ++ + + D+
Sbjct: 183 EEF---KLPKDGKMVRLTYKEGIEMLRAAGKE-IGDFEDLSTENEKFLGKLVRDKYDTDF 238
Query: 522 VIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLP 581
I+ +P ++PFY + + +G +++G+Q +L R+K GL
Sbjct: 239 YILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLS 298
Query: 582 RE--QYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
E + Y D +G H+G G + +V+F L ++R A FPR
Sbjct: 299 PEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPR 346
Score = 54.1 bits (129), Expect = 2e-08
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKRE 286
RT T ++ RI++ + + F V P + SEG S T F +
Sbjct: 36 RTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSS-VFEVTYFKGKA 92
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 133 bits (335), Expect = 2e-35
Identities = 45/283 (15%), Positives = 91/283 (32%), Gaps = 46/283 (16%)
Query: 352 LQAPSVKTDKVNFSEDFFSRQTYLTVSGRL-HLESYACALGNVYSFGPRFRAEKKES--S 408
L + + + LT S L + A L ++ P R E ++
Sbjct: 48 LWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDG 107
Query: 409 KHAAEMLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQ 468
+HA E ++ E+ +++ED M+ + L + E ++ + + L+
Sbjct: 108 RHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTKRFEVFEYSEVLE 167
Query: 469 SVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYP 528
S E +
Sbjct: 168 EFGSDEKASQEMEE------------------------------------------PFWI 185
Query: 529 KAVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWY 588
+ + DG ++ G V +G + E + + +I++ GL + + Y
Sbjct: 186 INIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPY 245
Query: 589 LDLRRHGTVK-HSGFSFGFDLMVLFTTGLTDVRDAIPFPRSLG 630
L++ + G +K +G G + +V F G + + PFPR G
Sbjct: 246 LEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
Score = 56.3 bits (135), Expect = 3e-09
Identities = 7/57 (12%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTT----DSEGFSEKFQVTTL 281
+ ++ + I++ + FF GF ++ +I+ + E + +
Sbjct: 6 ISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 130 bits (327), Expect = 5e-34
Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 12/278 (4%)
Query: 352 LQAPSVKTDKVNFSEDFFSRQTYLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESSKH 410
+ A + + F +F +L S +L+ E + L VY P FRAE+ +++H
Sbjct: 61 IIATATEGGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRH 120
Query: 411 AAE-MLMVETEIAFSQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQS 469
E + E+ M + ++ E +K+L+ ++ ++ +
Sbjct: 121 LNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLP---- 176
Query: 470 VISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPK 529
F +++Y +A++ L + ++I + + Y+ + +Y YP
Sbjct: 177 -----FPRVSYDKALEILGDLGKEIPWGE-DIDTEGERLLGKYMMENENAPLYFLYQYPS 230
Query: 530 AVKPFYVRLNDDGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQYEWYL 589
KPFY+ D+ + + +G + +G Q E R D+L +IKE GL E +E+YL
Sbjct: 231 EAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYL 290
Query: 590 DLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
R+G H GF G + ++ L ++R+ I FPR
Sbjct: 291 KAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPR 328
Score = 51.4 bits (122), Expect = 2e-07
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKREK 287
R V ++ +IRSS+ A FF +GF+ + P I T +EG +E F + +
Sbjct: 26 RRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFL 84
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 128 bits (322), Expect = 3e-33
Identities = 47/275 (17%), Positives = 88/275 (32%), Gaps = 16/275 (5%)
Query: 367 DFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQL 426
+ YL ++ L+L+ R + S +H E M+E +A++
Sbjct: 67 NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADY 126
Query: 427 EDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRL------QSVISSSFEKITY 480
D ++ + F+ L + +L + + +
Sbjct: 127 HDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDN 186
Query: 481 TEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLND 540
+A KAL + E G + E +A+ +P + YP V P R +
Sbjct: 187 FDAAKALAESIGITVEKSWGLG-RIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDV 245
Query: 541 DGNTVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLPREQ--------YEWYLDLR 592
+ F+ + G + G + R +E + E Y+
Sbjct: 246 NPEITDRFEFFIG-GREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTAL 304
Query: 593 RHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPR 627
+G +G G D M++ T +RD I FP
Sbjct: 305 EYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
Score = 57.5 bits (138), Expect = 2e-09
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTT 280
+RS + A F GF+ V+ P++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH 66
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 113 bits (284), Expect = 5e-28
Identities = 53/322 (16%), Positives = 104/322 (32%), Gaps = 51/322 (15%)
Query: 334 DLRKTNELVSHLESRDKLLQA----------------------PSVKTDKVNFSEDFFSR 371
DLR + +L R ++++A P D +
Sbjct: 30 DLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGL 88
Query: 372 QTYLTVSGRLHLESYACA-LGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQLEDAM 430
L S +L + A L + FR E + + ++ E++F ++ED +
Sbjct: 89 FYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDL-RADRQPDFTQLDLEMSFVEVEDVL 147
Query: 431 KCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKALEKV 490
+ + + + L L F + + E + L V
Sbjct: 148 ELNERLMAHVFREAL-GVELPLPFPRLSYEEAMERYGSD------KPDLRREGFRFLWVV 200
Query: 491 TEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDM 550
+ E E Y +P+ + + A+D+
Sbjct: 201 DFPLLEWDEEEEA------------WTYMHHPFTSPHPE--DLPLLEKDPGRVRALAYDL 246
Query: 551 VVPKGGTVITGSQNEERIDMLNTRIKELGL----PREQYEWYLDLRRHGTVKHSGFSFGF 606
V+ G V GS + + LG+ RE++ ++L+ +G H G ++G
Sbjct: 247 VLN-GVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGL 305
Query: 607 DLMVLFTTGLTDVRDAIPFPRS 628
D ++ TG +R+ I FP++
Sbjct: 306 DRLLALMTGSPSIREVIAFPKN 327
Score = 50.5 bits (120), Expect = 3e-07
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFD 283
R + +R+R + A F GF+ V+ P +T + EG +
Sbjct: 32 RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEP 86
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 110 bits (275), Expect = 6e-27
Identities = 50/269 (18%), Positives = 90/269 (33%), Gaps = 27/269 (10%)
Query: 364 FSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAF 423
S + L S +L + + + Y + ++ + E ++ E +F
Sbjct: 73 PSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSF 132
Query: 424 SQLEDAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEA 483
+ + + L E DL R S ++ +
Sbjct: 133 MTAPQVREVMEALVRHLWL---EVKGVDLGDFPVMTFAEAERRYGSDKPDLRDESKWAPL 189
Query: 484 VKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYPKAVKPFYVRLNDDGN 543
+ E E L + PK + ++ +
Sbjct: 190 WVIDFPMFEDDGEGGLTA-------------------MHHPFTSPKDMTAAELKAAPENA 230
Query: 544 TVAAFDMVVPKGGTVITGSQNEERIDMLNTRIKELGLP----REQYEWYLDLRRHGTVKH 599
A+DMV+ G V GS DM T LG+ RE++ + LD ++GT H
Sbjct: 231 VANAYDMVIN-GYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPH 289
Query: 600 SGFSFGFDLMVLFTTGLTDVRDAIPFPRS 628
+G +FG D + + TG ++RD I FP++
Sbjct: 290 AGLAFGLDRLTMLLTGTDNIRDVIAFPKT 318
Score = 51.3 bits (122), Expect = 1e-07
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 229 RTTTVASVMRIRSSLTHATHTFFQNHGFLYVQVPVITTTDSEGFSEKFQVTTLFDKRE 286
R +A ++ R+ +T F +HGFL ++ P++T EG + + + +
Sbjct: 24 RRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKF 81
>d3ckca1 a.118.8.6 (A:42-551) Starch utilization system protein SusD
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 510
Score = 34.6 bits (78), Expect = 0.033
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 12/113 (10%)
Query: 517 IYKRPVIVYNYPKAVKPFYVRLNDDGNTVAAFDMVVPK-GGTVITGSQNEERIDMLNTRI 575
+++ +A R D + + + T + E+ + ++
Sbjct: 394 LFRLAEAYLTRAEA----IFRQGGDA--TGDINELRKRANCTRKVQTVTEQEL--IDEWA 445
Query: 576 KELGLPREQYEWYLDLRRHGTVKHSGFSFGFDLMVLFTTGLTDVRDAIPFPRS 628
+E L E DL R G + + + + + T + + P P S
Sbjct: 446 REFYL--EGRRRS-DLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVS 495
>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease,
domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId:
2234]}
Length = 91
Score = 27.8 bits (62), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 582 REQYEWYLDLRRHGTVKHSGFSFGFDLMV 610
+YE Y +L+ G V +GF FG + V
Sbjct: 3 DRRYEVYRNLKERGFVVKTGFKFGSEFRV 31
>d1pula1 a.39.1.11 (A:18-120) Hypothetical protein c32e8.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 103
Score = 27.9 bits (62), Expect = 1.3
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 428 DAMKCADDYFKFLCKWILEDCSKDLEFVSKRIDMTCIDRLQSVISSSFEKITYTEAVKAL 487
M + F K D +K I T S ++ +K T+ E K L
Sbjct: 23 TEMTGKN--FDKWLK----DAG---VLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVL 73
Query: 488 EKVTEKIFETKLE 500
V E +
Sbjct: 74 AFVAEDRARQSKK 86
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 28.1 bits (62), Expect = 2.3
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 314 KVEELKRSESNREALIAAVQDLRKTNELVSHL 345
++ + E + + +L + V+HL
Sbjct: 141 LATDVSNDDFLWERIKKSEAELLAEKKCVAHL 172
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
second repeated element {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 25.8 bits (57), Expect = 2.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 304 LKASIKEKSNKVEELKRSESNREALIAAVQDL 335
L + + + V ELK ++ +E + AAV+ L
Sbjct: 5 LYNRVAVQGDVVRELKAKKAPKEDVDAAVKQL 36
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 27.3 bits (60), Expect = 3.3
Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 367 DFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMVETEIAFSQL 426
D ++ + L + + + E + + L
Sbjct: 42 DVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNL 101
Query: 427 EDAMKCAD---DY--FKFLCKWILEDCSKDLEFVSKRIDMTCIDRL 467
+A+ AD DY + IL D ++++ +D+ I ++
Sbjct: 102 REAIGYADSVHDYVSRDMM-IEILRDEEGHIDWLETELDL--IQKM 144
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS)
second repeated element {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 56
Score = 25.4 bits (56), Expect = 4.2
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 303 ILKASIKEKSNKVEELKRSESNREALIAAVQDL 335
++ I + V +LK ++ + + AV+ L
Sbjct: 1 MVYDKIAAQGEVVRKLKAEKAPKAKVTEAVECL 33
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 25.1 bits (55), Expect = 4.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 304 LKASIKEKSNKVEELKRSESNREALIAAVQDL 335
L SI + V LK ++++ + +AV+ L
Sbjct: 6 LFNSIATQGELVRSLKAGNASKDEIDSAVKML 37
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein
BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 157
Score = 27.0 bits (59), Expect = 4.6
Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 17/145 (11%)
Query: 192 LKVEKILHIGTVDHDKYPLSRKRLPMDMLRDSAHFRPRTTT-------------VASVMR 238
+ +G D + P +PM+ ++ + V
Sbjct: 16 ILQADACFVGITDLEGNPYV---VPMNFGYENDTLYLHSGPEGGKIEMLQRNNNVCITFS 72
Query: 239 IRSSLTHATHTFFQNHGFLYVQVPVITT-TDSEGFSEKFQVTTLFDKREKEGPKTAKDIE 297
+ L + ++ E EK + + + + D
Sbjct: 73 LGHKLVYQHKQVACSYSMRSESAMCRGKVEFIEDMEEKRHALDIIMRHYTKDQFSYSDPA 132
Query: 298 GVNLDILKASIKEKSNKVEELKRSE 322
N+ + K + + + KV L+ E
Sbjct: 133 VRNVKVWKVPVDQMTGKVFGLRADE 157
>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease,
C-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 97
Score = 25.9 bits (57), Expect = 5.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 588 YLDLRRHGTVKHSGFSFGFDLMV 610
Y DLR G + +G +G D +
Sbjct: 10 YKDLRTRGYIVKTGLKYGADFRL 32
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp.
[TaxId: 1143]}
Length = 222
Score = 26.6 bits (58), Expect = 7.8
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 358 KTDKVNFSEDFFSRQTYLTVSGRLHLESYACALGNVYSFGPRFRAEKKESSKHAAEMLMV 417
+ V F + F G + SY +GN+Y + A ++E +K +
Sbjct: 18 MAENVGFVKCFLK--------GVVEKNSYRKLVGNLYFV---YSAMEEEMAKFKDH--PI 64
Query: 418 ETEIAFSQLEDAMKCADDY 436
+ I F +L D
Sbjct: 65 LSHIYFPELNRKQSLEQDL 83
>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 138
Score = 26.0 bits (57), Expect = 9.5
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 469 SVISSSFEKITYTEAVKALEKVTEKIFETKLEWGVALTAEHLSYLADEIYKRPVIVYNYP 528
V + S I Y E KALE++ K F+ K + E + I +
Sbjct: 61 KVKAKSARVINYEEFKKALEELATKRFKGKSK------EEAFDAICQLIAGKEPANIGVT 114
Query: 529 KAVKPFYVRLNDDGNT 544
KA V D +
Sbjct: 115 KAKTGGAVDRLTDTSK 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.379
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,299,128
Number of extensions: 111025
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 28
Length of query: 634
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 543
Effective length of database: 1,158,166
Effective search space: 628884138
Effective search space used: 628884138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)