Query 006718
Match_columns 634
No_of_seqs 95 out of 120
Neff 2.4
Searched_HMMs 46136
Date Thu Mar 28 13:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03759 PRONE: PRONE (Plant-s 100.0 2E-199 3E-204 1490.6 23.6 363 127-498 2-365 (365)
2 smart00546 CUE Domain that may 73.7 3.6 7.7E-05 30.8 2.8 34 433-466 3-36 (43)
3 PF02845 CUE: CUE domain; Int 66.4 6.2 0.00014 29.6 2.7 34 433-466 2-35 (42)
4 PF09539 DUF2385: Protein of u 48.4 1.8 3.9E-05 39.1 -3.2 31 168-198 10-41 (96)
5 KOG2379 Endonuclease MUS81 [Re 37.0 77 0.0017 36.1 6.2 81 292-384 356-450 (501)
6 TIGR02301 conserved hypothetic 35.5 4.1 8.9E-05 38.3 -3.1 31 168-198 35-66 (121)
7 KOG0938 Adaptor complexes medi 35.4 29 0.00064 38.2 2.7 40 170-234 260-299 (446)
8 PF10236 DAP3: Mitochondrial r 27.1 71 0.0015 33.0 3.8 61 304-364 79-141 (309)
9 cd08812 CARD_RIG-I_like Caspas 21.7 68 0.0015 27.9 2.1 44 412-455 25-77 (88)
10 PF02169 LPP20: LPP20 lipoprot 20.6 47 0.001 27.3 0.9 31 146-176 14-44 (92)
No 1
>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli. Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.
Probab=100.00 E-value=1.5e-199 Score=1490.60 Aligned_cols=363 Identities=77% Similarity=1.221 Sum_probs=290.8
Q ss_pred chhHHHHHHHHHHhhhccCCCCCCCchhhHHHHHHHHHHHHHhhhcceeccCCCChhHHhhhhhccceeeeccCeeEEee
Q 006718 127 LPDVEMMKERFAKLLLGEDMSGCGNGVSTALAISNAITNLCATLFGQLWRLEPLPLEKKAMWRREMEWFLCVSDHIVELT 206 (634)
Q Consensus 127 ~sevEmMKERFAKLLLGEDMSGgGKGV~TALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmdwLLSVsD~IVElv 206 (634)
.+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||||||
T Consensus 2 ~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AtvFGe~~rLEPl~~ekk~~WrrEm~wLLsv~d~iVE~v 81 (365)
T PF03759_consen 2 PSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLAATVFGELWRLEPLSPEKKAMWRREMDWLLSVTDYIVELV 81 (365)
T ss_dssp HHHHHHHHHHHHHHHTTTBTTSSS-S--HHHHHHHHHHHHHHHHHTT--SSS---HHHHHHHHHHHHHHHGGGGG-EEEE
T ss_pred chHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHhcceeecchhhhhhcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCEEEEEecccCcccccCchhHHhhHHHHHHHHhcCCCCeeEeeecCcccccCCCCcccccccccccccccc
Q 006718 207 PSWQTFPDGSKLEVMTCRPRSDLYINLPALRKLDNMLLEILDSFENTEFWYVDQGILASEADGSTSFRRALQRQEEKWWL 286 (634)
Q Consensus 207 PS~Q~~~dG~~~EVMttrpRsDL~~NLPALrKLD~MLle~LDSF~dtEFWYvd~g~~~~~~d~~~s~r~~~~R~eeKWWL 286 (634)
|+||++|||+++|||+||||+|||||||||||||+||||+||||+|||||||++|+++ ++++++++|+..+||++||||
T Consensus 82 Ps~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLie~LDsf~dtEFwYv~~g~~~-~~~~~~~~~~~~~r~~~KWWL 160 (365)
T PF03759_consen 82 PSKQTFPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLIEILDSFKDTEFWYVDQGIVA-DSDSSSSFRRSSQRQEEKWWL 160 (365)
T ss_dssp EEEEE-TTS-EEEEEEEEE-HHHHTHHHHHHHHHHHHHHHHHTTCS-SSEE--TT-------SHHHHT------CCCTTS
T ss_pred cceeecCCCceEEEEecCccchhhcCcHHHHHHHHHHHHHHHhCCCCeeEEecCCccc-ccccCccccCcccccCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999988 778889999999999999999
Q ss_pred cCCcCCCCCCChHHHHHHhhhhhhHHHHHHHHHHhhhhhhccCCCchhHHhhcccCCCcchhhHHHHhhccCCCChHHHH
Q 006718 287 PVPRVPLGGLHENTRKQLQHKRDCTNQILKAAMAINSITLADMEVPESYFESLPKNGRVSLGDLIYRYISSDQFSPEYLL 366 (634)
Q Consensus 287 P~P~VPp~GLSe~~RK~Lq~qrd~~nQIlKAAmAINs~vL~EMeVPe~Y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL 366 (634)
|+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.||||||+|+|||||||
T Consensus 161 P~p~VP~~GLse~~rK~L~~~rd~~~QilKAAmaIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~~~Fspe~ll 240 (365)
T PF03759_consen 161 PVPRVPPNGLSEESRKWLQHQRDCVNQILKAAMAINSQVLAEMEIPESYLESLPKNGRASLGDSIYRYITSEQFSPEQLL 240 (365)
T ss_dssp --EE--TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHCS-SSHHHHHHHHHHHHCTSSS--HHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccccHHHHHHHHhccCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhhhHHHHhhhHHHHHHHHHhhhcCCCCCCCCCCCCCCCc-ccccccccchhHHHHHHHHHHHHHHHHHhhCCC
Q 006718 367 ECLDLSSEHQATEIANRVEAAMYVWRKRTNSKPANSTTRSSSKSSW-GLVKEFVVDTEKRELLADRAESLLLCLKQWFPG 445 (634)
Q Consensus 367 ~~LdLsSEH~aLe~aNRvEAai~vWrrK~~~k~~~~~~~s~~ksSW-~~vKd~~~~~dKrellaeRAEtlL~~LKqRfPg 445 (634)
+||||||||+|||+||||||||||||||+++| ++|+|| ++|||++++.|||++|++|||+||+||||||||
T Consensus 241 ~~ldlssEH~~le~~NRvEAai~vWrrK~~~k--------~~ksSWg~~vkdl~~~~dK~e~l~eRAEtlL~~LK~RfPg 312 (365)
T PF03759_consen 241 DCLDLSSEHKALELANRVEAAIYVWRRKICEK--------DSKSSWGSMVKDLMSDGDKRELLAERAETLLLCLKQRFPG 312 (365)
T ss_dssp HTS--SSHHHHHHHHHHHHHHHHHHCH-----------------------------HHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHhcCC--------CCccchhhhcccccccchHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999986 578999 699999999999999999999999999999999
Q ss_pred CCcchhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCC
Q 006718 446 LPQTTLDMSKIQYNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKHS 498 (634)
Q Consensus 446 LpQTsLD~sKIQyNKDVG~AILESYSRVLESLAfnI~sRIdDVL~~D~l~k~~ 498 (634)
||||+||++|||||||||||||||||||||||||||++|||||||+|++++++
T Consensus 313 l~QT~LD~~KIQyNkDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~~~~~~ 365 (365)
T PF03759_consen 313 LPQTSLDISKIQYNKDVGQAILESYSRVLESLAFNILSRIDDVLYADDLTKNS 365 (365)
T ss_dssp ----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCchHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999753
No 2
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=73.65 E-value=3.6 Score=30.84 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhccchhhHHH
Q 006718 433 ESLLLCLKQWFPGLPQTTLDMSKIQYNKDVGKSI 466 (634)
Q Consensus 433 EtlL~~LKqRfPgLpQTsLD~sKIQyNKDVG~AI 466 (634)
+..+..|++-||.++...+-..=.++|.||..+|
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i 36 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATI 36 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3467889999999999999888888999998876
No 3
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=66.40 E-value=6.2 Score=29.56 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhccchhhHHH
Q 006718 433 ESLLLCLKQWFPGLPQTTLDMSKIQYNKDVGKSI 466 (634)
Q Consensus 433 EtlL~~LKqRfPgLpQTsLD~sKIQyNKDVG~AI 466 (634)
+..+..|+.-||.++...+-..=.++|.||-.+|
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai 35 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAI 35 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3567899999999999999999889999998876
No 4
>PF09539 DUF2385: Protein of unknown function (DUF2385); InterPro: IPR012645 Members of this uncharacterised protein family are found in a number of alphaproteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus (Caulobacter vibrioides), and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulphide bond. The function is unknown.
Probab=48.39 E-value=1.8 Score=39.13 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=27.0
Q ss_pred HhhhcceeccCCCCh-hHHhhhhhccceeeec
Q 006718 168 ATLFGQLWRLEPLPL-EKKAMWRREMEWFLCV 198 (634)
Q Consensus 168 AtVFGelwrLEPL~~-ekK~mWrREmdwLLSV 198 (634)
|-|+|.++-|.+|+. +....||.+|.=||-+
T Consensus 10 AeiLGalHyLR~LCg~~~~~~WR~~M~~Ll~~ 41 (96)
T PF09539_consen 10 AEILGALHYLRNLCGGNEDQYWRDRMQALLDA 41 (96)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHh
Confidence 679999999999999 8899999999866643
No 5
>KOG2379 consensus Endonuclease MUS81 [Replication, recombination and repair]
Probab=37.03 E-value=77 Score=36.10 Aligned_cols=81 Identities=26% Similarity=0.315 Sum_probs=61.7
Q ss_pred CCCCCChHHHHHHhhhhhhHHHHHHHHHHhh-------hhhhccCCCch-------hHHhhcccCCCcchhhHHHHhhcc
Q 006718 292 PLGGLHENTRKQLQHKRDCTNQILKAAMAIN-------SITLADMEVPE-------SYFESLPKNGRVSLGDLIYRYISS 357 (634)
Q Consensus 292 Pp~GLSe~~RK~Lq~qrd~~nQIlKAAmAIN-------s~vL~EMeVPe-------~Y~esLPKnGrasLGD~iYr~iT~ 357 (634)
-..||-+..+|-=.-+|. .-||.+-++-=+ .|..-+|.+|. ++.+-++|++.-++||..|+
T Consensus 356 RT~~l~et~s~l~y~tr~-~~~~~~~~~~~~~d~~~~~~q~~~~~~~p~~~~~~f~~F~~~~~K~~~~TV~evf~~---- 430 (501)
T KOG2379|consen 356 RTRDLGETVSKLAYLTRG-LLQIYASLLLDKEDYRERDDQLKGAMTVPSETELSFSAFQERLSKGKALTVGEVFAR---- 430 (501)
T ss_pred EecChhHHHHHHHHHhHH-HHHHHHHhhccccccccchhhhhcccCCCCcccccHHHHHHHhhhcccccHHHHHHH----
Confidence 345666666665344444 467777776555 78999999995 88999999999999999998
Q ss_pred CCCChHHHHhhcCCchhhhHHHHhhhH
Q 006718 358 DQFSPEYLLECLDLSSEHQATEIANRV 384 (634)
Q Consensus 358 d~Fspe~lL~~LdLsSEH~aLe~aNRv 384 (634)
+|+.+..+|-| .|.+|++|-
T Consensus 431 ------qLMqvkg~S~e-rAiAI~d~Y 450 (501)
T KOG2379|consen 431 ------QLMQVKGMSLE-RAIAIADRY 450 (501)
T ss_pred ------HHHhccCccHH-HHHHHHHhc
Confidence 56778888887 777777664
No 6
>TIGR02301 conserved hypothetical protein TIGR02301. Members of this uncharacterized protein family are found in a number of alphaProteobacteria, including root nodule bacteria, Brucella suis, Caulobacter crescentus, and Rhodopseudomonas palustris. Conserved residues include two well-separated cysteines, suggesting a disulfide bond. The function is unknown.
Probab=35.55 E-value=4.1 Score=38.33 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=26.2
Q ss_pred HhhhcceeccCCCChhHH-hhhhhccceeeec
Q 006718 168 ATLFGQLWRLEPLPLEKK-AMWRREMEWFLCV 198 (634)
Q Consensus 168 AtVFGelwrLEPL~~ekK-~mWrREmdwLLSV 198 (634)
|.|+|+++-|.+|+.... ..||.+|.=|+-+
T Consensus 35 AeiLG~lHyLR~LC~~~~~~~WR~~M~~Ll~a 66 (121)
T TIGR02301 35 AEILGSLHYLRNLCGSKGDDYWRSRMQALIDA 66 (121)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Confidence 678999999999998665 8999999876643
No 7
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.40 E-value=29 Score=38.18 Aligned_cols=40 Identities=43% Similarity=0.811 Sum_probs=31.6
Q ss_pred hhcceeccCCCChhHHhhhhhccceeeeccCeeEEeecCcccCCCCCEEEEEecccCcccccCch
Q 006718 170 LFGQLWRLEPLPLEKKAMWRREMEWFLCVSDHIVELTPSWQTFPDGSKLEVMTCRPRSDLYINLP 234 (634)
Q Consensus 170 VFGelwrLEPL~~ekK~mWrREmdwLLSVsD~IVElvPS~Q~~~dG~~~EVMttrpRsDL~~NLP 234 (634)
-|-||-||--.. +.|+++||| ||| .+|.|--|-+.|| |||
T Consensus 260 ~FHqCV~L~kFn-----------------~eh~IsFvP-----PDG-e~ELMkYr~~enI--nlP 299 (446)
T KOG0938|consen 260 TFHQCVRLDKFN-----------------SEHIISFVP-----PDG-EFELMKYRVTENI--NLP 299 (446)
T ss_pred chheeecccccc-----------------ccceEEEeC-----CCC-ceEeEeeeeccCc--ccc
Confidence 399999986443 469999998 888 4899999888875 555
No 8
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=27.10 E-value=71 Score=33.04 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=45.6
Q ss_pred HhhhhhhHHHHHHHHHHhhhhhhccCCCchhHHhh--cccCCCcchhhHHHHhhccCCCChHH
Q 006718 304 LQHKRDCTNQILKAAMAINSITLADMEVPESYFES--LPKNGRVSLGDLIYRYISSDQFSPEY 364 (634)
Q Consensus 304 Lq~qrd~~nQIlKAAmAINs~vL~EMeVPe~Y~es--LPKnGrasLGD~iYr~iT~d~Fspe~ 364 (634)
+-.|-..+.++||.-.+.|..+|..|.+...|.-+ -+.-+..+|-|.+=..+....+++++
T Consensus 79 ~~~qP~~a~~~L~~~~~~N~~~L~~i~~s~~~~~~~~~~~~~g~tL~dLv~~g~~~~~~a~~~ 141 (309)
T PF10236_consen 79 LYDQPMYAAKWLKKFLKANEELLKKIKLSKDYKWSKRESTPKGSTLLDLVEQGINDPKYAWDV 141 (309)
T ss_pred eeecHHHHHHHHHHHHHHhHHHHHhccccccccccccccCCCCCCHHHHHHhhcccchhHHHH
Confidence 34577888999999999999999999999998766 33344467777666666666666544
No 9
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=21.65 E-value=68 Score=27.90 Aligned_cols=44 Identities=34% Similarity=0.409 Sum_probs=31.4
Q ss_pred cccccccccchhHHHHHHHH--------HHHHHHHHHh-hCCCCCcchhhhhh
Q 006718 412 WGLVKEFVVDTEKRELLADR--------AESLLLCLKQ-WFPGLPQTTLDMSK 455 (634)
Q Consensus 412 W~~vKd~~~~~dKrellaeR--------AEtlL~~LKq-RfPgLpQTsLD~sK 455 (634)
|..+-+...+.+|-++.++. |+.||.+|.+ |=||-.+.++|+=.
T Consensus 25 l~~l~~~L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~ 77 (88)
T cd08812 25 LDHLPECLTDEDKEQILAEERNKGNIAAAEELLDRLERCDKPGWFQAFLDALR 77 (88)
T ss_pred HHHHHHHcCHHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 44443344455666665544 8889999998 99999999998743
No 10
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=20.58 E-value=47 Score=27.34 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=25.9
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhhhcceec
Q 006718 146 MSGCGNGVSTALAISNAITNLCATLFGQLWR 176 (634)
Q Consensus 146 MSGgGKGV~TALAiSNAITNL~AtVFGelwr 176 (634)
+.|-|.|-..-.|.-||..||+..|+|..-.
T Consensus 14 l~a~G~~~~~~~A~~~A~~~la~~i~~~v~~ 44 (92)
T PF02169_consen 14 LYAVGSGSSREQAKQDALANLAEQISVVVIS 44 (92)
T ss_pred EEEEEcccChHHHHHHHHHHHHHheeEEEEe
Confidence 5666777777999999999999999998643
Done!