Query 006718
Match_columns 634
No_of_seqs 95 out of 120
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 07:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006718.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006718hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 32.1 13 0.00092 37.5 3.4 27 158-184 579-610 (638)
2 d1t3qb2 d.133.1.1 (B:166-786) 31.9 15 0.0011 36.3 4.0 36 154-191 583-619 (621)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 24.3 23 0.0017 26.8 2.8 34 432-465 9-42 (59)
4 d1mn3a_ a.5.2.4 (A:) Vacuolar 21.5 47 0.0034 24.6 4.0 34 433-466 13-46 (54)
5 d1ffvb2 d.133.1.1 (B:147-803) 20.9 38 0.0028 33.7 4.5 38 153-191 615-652 (657)
6 d2ia7a1 d.373.1.1 (A:23-133) U 19.8 29 0.0021 27.3 2.8 37 156-192 8-56 (111)
7 d1n62b2 d.133.1.1 (B:147-809) 17.8 45 0.0033 33.1 4.2 44 149-193 611-660 (663)
8 d1b6aa1 a.4.5.25 (A:375-448) M 16.2 39 0.0028 25.6 2.6 26 430-455 23-48 (74)
9 d1rx0a2 e.6.1.1 (A:10-240) Iso 16.1 64 0.0046 27.1 4.2 46 292-341 6-52 (231)
10 d1rkba_ c.37.1.1 (A:) Adenylat 15.4 12 0.00085 28.9 -0.7 40 329-368 2-41 (173)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.08 E-value=13 Score=37.48 Aligned_cols=27 Identities=41% Similarity=0.471 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhcc----eecc-CCCChhH
Q 006718 158 AISNAITNLCATLFGQ----LWRL-EPLPLEK 184 (634)
Q Consensus 158 AiSNAITNL~AtVFGe----lwrL-EPL~~ek 184 (634)
||.|||-|....-|.. .+.+ =||.|||
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPer 610 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEK 610 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHH
Confidence 8999999999988873 4444 4999997
No 2
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=31.95 E-value=15 Score=36.29 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHhhhc-ceeccCCCChhHHhhhhhc
Q 006718 154 STALAISNAITNLCATLFG-QLWRLEPLPLEKKAMWRRE 191 (634)
Q Consensus 154 ~TALAiSNAITNL~AtVFG-elwrLEPL~~ekK~mWrRE 191 (634)
++|=||.|||.|-... +| .+.+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 4667999999998653 33 34454 9999986555443
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.33 E-value=23 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhCCCCCcchhhhhhhhccchhhHH
Q 006718 432 AESLLLCLKQWFPGLPQTTLDMSKIQYNKDVGKS 465 (634)
Q Consensus 432 AEtlL~~LKqRfPgLpQTsLD~sKIQyNKDVG~A 465 (634)
+|..+..||.-||++....+..-=++.|-+|+.|
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~a 42 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAA 42 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHH
Confidence 3556889999999988665555444444444444
No 4
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.47 E-value=47 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhccchhhHHH
Q 006718 433 ESLLLCLKQWFPGLPQTTLDMSKIQYNKDVGKSI 466 (634)
Q Consensus 433 EtlL~~LKqRfPgLpQTsLD~sKIQyNKDVG~AI 466 (634)
+..+..||.-||++....+..-=.+.+-+|+.||
T Consensus 13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~ai 46 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCV 46 (54)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4578999999999988877777677777777665
No 5
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=20.91 E-value=38 Score=33.70 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHhhhcceeccCCCChhHHhhhhhc
Q 006718 153 VSTALAISNAITNLCATLFGQLWRLEPLPLEKKAMWRRE 191 (634)
Q Consensus 153 V~TALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrRE 191 (634)
+++|=||.|||-|-... .|--.+==||.|||=-.+-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 35677899999997433 365444449999986665554
No 6
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=19.79 E-value=29 Score=27.34 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhcc----------eecc--CCCChhHHhhhhhcc
Q 006718 156 ALAISNAITNLCATLFGQ----------LWRL--EPLPLEKKAMWRREM 192 (634)
Q Consensus 156 ALAiSNAITNL~AtVFGe----------lwrL--EPL~~ekK~mWrREm 192 (634)
.=||-++|-||--|-+|| +|.| ||+.+..+...++++
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I 56 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEV 56 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHH
Confidence 347889999999999999 8888 999999999999888
No 7
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=17.83 E-value=45 Score=33.12 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.5
Q ss_pred CCCch------hhHHHHHHHHHHHHHhhhcceeccCCCChhHHhhhhhccc
Q 006718 149 CGNGV------STALAISNAITNLCATLFGQLWRLEPLPLEKKAMWRREME 193 (634)
Q Consensus 149 gGKGV------~TALAiSNAITNL~AtVFGelwrLEPL~~ekK~mWrREmd 193 (634)
|.||| ++|=||.|||-|-.+ .+|--.+=-||.|||=-+.-+|+.
T Consensus 611 GakGvGE~~~~~~~~Ai~nAI~~A~~-~~G~r~~~lP~tpe~v~~~~~~~~ 660 (663)
T d1n62b2 611 GAKGVGESPHVGGVPCFSNAVNDAYA-FLNAGHIQMPHDAWRLWKVGEQLG 660 (663)
T ss_dssp SBCCCTTHHHHHHHHHHHHHHHHHHH-TTTCCCCCSCCCHHHHHHHHHHTT
T ss_pred CceecccccccchHHHHHHHHHHHHH-hcCCccccCCCCHHHHHHHHHHcC
Confidence 45665 478899999998764 578766777999999866667764
No 8
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.24 E-value=39 Score=25.61 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhCCCCCcchhhhhh
Q 006718 430 DRAESLLLCLKQWFPGLPQTTLDMSK 455 (634)
Q Consensus 430 eRAEtlL~~LKqRfPgLpQTsLD~sK 455 (634)
..|+.+|..++.+|+.||.+-=-..+
T Consensus 23 ~~ar~lL~~I~~~f~tLPFs~R~L~~ 48 (74)
T d1b6aa1 23 PRTKHLLNVINENFGTLAFCRRWLDR 48 (74)
T ss_dssp HHHHHHHHHHHHHTTTSCEEHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCccHHHHhh
Confidence 35778999999999999998544443
No 9
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.07 E-value=64 Score=27.06 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=32.1
Q ss_pred CCCCCChHHHHHHhhhhhhHHHHH-HHHHHhhhhhhccCCCchhHHhhccc
Q 006718 292 PLGGLHENTRKQLQHKRDCTNQIL-KAAMAINSITLADMEVPESYFESLPK 341 (634)
Q Consensus 292 Pp~GLSe~~RK~Lq~qrd~~nQIl-KAAmAINs~vL~EMeVPe~Y~esLPK 341 (634)
|.-||+|+.|...+.-|+++...+ ..|..+-.. =.+|...++.|-+
T Consensus 6 ~~~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~----~~~p~~~~~~l~~ 52 (231)
T d1rx0a2 6 PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQK----ELFPVDVMRKAAQ 52 (231)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH----TCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhc----CCCCHHHHHHHHH
Confidence 788999999999999999998743 545544432 2366666655433
No 10
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=15.44 E-value=12 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=32.0
Q ss_pred CCCchhHHhhcccCCCcchhhHHHHhhccCCCChHHHHhh
Q 006718 329 MEVPESYFESLPKNGRVSLGDLIYRYISSDQFSPEYLLEC 368 (634)
Q Consensus 329 MeVPe~Y~esLPKnGrasLGD~iYr~iT~d~Fspe~lL~~ 368 (634)
|-+|-..+--.|-+||++++..|-+.+.-..++.++++..
T Consensus 2 m~~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~ 41 (173)
T d1rkba_ 2 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE 41 (173)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHH
Confidence 5677777888999999999999988877677777766643
Done!