BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006722
         (633 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB6|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Sulfate Complex
 pdb|2QB7|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB7|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase,
           Phosphate Complex
 pdb|2QB8|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
 pdb|2QB8|B Chain B, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Atp
           Complex
          Length = 397

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 508 SYSQKIWLVGKGLTEEEQSKAKKGTIFIPFSQFPPNDKKIRKDCMYHL 555
           SY Q I+   +G   EE+   KKG+  +P    P  D  +R+D MY L
Sbjct: 50  SYCQYIY--NEGTYSEEK---KKGSFIVPIIDIPREDLSLRRDVMYVL 92


>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
 pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
          Length = 388

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 545 KKIRKDCMYHLTPAMAVPAAFENVDSCENWLPRRVMSAWRIG 586
           +KI  D   HL+   A P A+E    C  +     M+ WR+G
Sbjct: 206 EKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVG 247


>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
           D83a Complex With Fructose-1,6-Bisphosphate
 pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
           D83a Complex With Fructose-1,6-Bisphosphate
          Length = 323

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 275 KTSDTLY-----ETSLKRQEDSPDVVHLTHLTTPESI-YHMRLGFASM 316
           K SD +Y     E +L++  D P  +HL H  T ES+   + LGF+S+
Sbjct: 55  KYSDMIYLKKLCEAALEKHPDIPICIHLAHGDTLESVKMAIDLGFSSV 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,593,007
Number of Sequences: 62578
Number of extensions: 733328
Number of successful extensions: 2053
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2051
Number of HSP's gapped (non-prelim): 7
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)