BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006724
         (633 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BXW|B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
           Protein, Si-Clp
 pdb|3BXW|A Chain A, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like
           Protein, Si-Clp
          Length = 393

 Score = 33.1 bits (74), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 199 NSDNYYQCIARPKSQISNNKKTNGYIVVHANGGLNQMRTGICDMVA-VAKIMNATLVLPL 257
           +S++  + +++   Q++ N+  +G++V   N  L+Q R G+  M+  +A+ ++   +L L
Sbjct: 165 DSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQARLLAL 224

Query: 258 LDHESFWTDPSDFKDIFDWRHFMNV--LKDDVNIVEYLPTRYARKKPLLKAPVSWSKA 313
           L      T  +D   +F  + F  +  + D  +++ Y  +   +  P   AP+SW +A
Sbjct: 225 LVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGP--NAPLSWVRA 280


>pdb|3ZY2|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp (High
           Resolution Dataset)
 pdb|3ZY3|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp
           (Crystal-Form-Iii)
 pdb|3ZY3|B Chain B, Crystal Structure Of Pofut1 In Complex With Gdp
           (Crystal-Form-Iii)
 pdb|3ZY4|A Chain A, Crystal Structure Of Pofut1 Apo-Form (Crystal-Form-I)
 pdb|3ZY5|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
           (Crystal-Form-I)
 pdb|3ZY6|A Chain A, Crystal Structure Of Pofut1 In Complex With Gdp-Fucose
           (Crystal-Form-Ii)
          Length = 362

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 325 KKHKVIKFSHTDSRLANNGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPY 384
           +++ V+ FS   +   + G   SIQ+         LR+S  I +  K  +    N ++P+
Sbjct: 164 EEYPVLAFSSAPAPFPSKGKVWSIQKY--------LRWSSRITEQAKKFISA--NLAKPF 213

Query: 385 VALHLRYEKDMLAFTGCSH 403
           VA+HLR + D +    C H
Sbjct: 214 VAVHLRNDADWVRV--CEH 230


>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
           Clostridium Perfringens
 pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
           Clostridium Perfringens
          Length = 328

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 250 NATLVLPLLDHESFWTDPSDFKD----IFDWRHFMNVLKDDVNIVEYLPTRYARKKPLLK 305
           N   V  + D +S     +DF D    IF+   +  +  D+  I EYL   +  K   + 
Sbjct: 106 NGEXVSAIADXKSIGAXNTDFIDSKREIFENAEYTVLDSDNPEIXEYLLKNFKDKTNFIL 165

Query: 306 APVSWSKASYYRNEMVPLLKKHKVIK 331
            PVS  KAS+ ++    L+K    IK
Sbjct: 166 DPVSAEKASWVKH----LIKDFHTIK 187


>pdb|4G19|A Chain A, Crystal Structure Of The Glutathione Transferase Gte1 From
           Phanerochaete Chrysosporium In Complex With Glutathione
 pdb|4G19|B Chain B, Crystal Structure Of The Glutathione Transferase Gte1 From
           Phanerochaete Chrysosporium In Complex With Glutathione
 pdb|4G19|C Chain C, Crystal Structure Of The Glutathione Transferase Gte1 From
           Phanerochaete Chrysosporium In Complex With Glutathione
 pdb|4G19|D Chain D, Crystal Structure Of The Glutathione Transferase Gte1 From
           Phanerochaete Chrysosporium In Complex With Glutathione
          Length = 253

 Score = 30.0 bits (66), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 186 LEKISTPEIWMKPNSDNYYQCIARPKSQISNNKKTNGYIVVHANGGLNQMRTGICDMVAV 245
           LE+++T E W K  +      +A+ K  +  N K N  +++ A GG+      I      
Sbjct: 161 LEELATEEEWAKVEA-----GLAKLKGYLDANGKGNDLLLMGAQGGITYSDIQIASFFVW 215

Query: 246 AKIM 249
           AKI+
Sbjct: 216 AKII 219


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,270,887
Number of Sequences: 62578
Number of extensions: 700971
Number of successful extensions: 1581
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 4
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)