Query 006724
Match_columns 633
No_of_seqs 178 out of 394
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 2.2E-14 7.5E-19 150.7 15.5 293 218-542 19-382 (408)
2 3zy2_A Putative GDP-fucose pro 99.3 6.2E-11 2.1E-15 124.4 18.0 266 219-540 6-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.8 0.0036 1.2E-07 69.0 24.8 254 221-540 145-421 (526)
4 2hhc_A NODZ, nodulation fucosy 97.8 0.00047 1.6E-08 69.9 16.6 265 220-533 3-294 (330)
5 4g1u_A Hemin transport system 73.2 1.5 5.2E-05 46.2 2.5 17 119-135 34-50 (357)
6 2ksr_A Neuronal acetylcholine 70.4 2.1 7.3E-05 40.6 2.6 44 89-134 16-76 (164)
7 3llq_A Aquaporin Z 2; aquapori 59.3 3.1 0.0001 42.1 1.4 12 474-485 211-222 (256)
8 2a9h_A Voltage-gated potassium 54.9 6.4 0.00022 36.6 2.7 16 109-124 42-57 (155)
9 3un6_A Hypothetical protein sa 47.5 3.9 0.00013 40.5 0.0 13 80-92 2-14 (341)
10 2lkg_A Acetylcholine receptor; 44.7 11 0.00038 34.8 2.5 40 93-134 41-97 (140)
11 3ne5_B Cation efflux system pr 43.7 5.1 0.00017 42.0 0.1 14 75-88 400-413 (413)
12 4dve_A Biotin transporter BIOY 41.5 9.7 0.00033 37.2 1.7 11 82-92 2-12 (198)
13 2lwx_A Zuotin; J-protein, mole 39.3 6.3 0.00021 35.5 0.0 16 80-95 3-19 (108)
14 2yjp_A Putative ABC transporte 38.5 6.6 0.00022 37.6 0.0 11 82-92 5-15 (291)
15 1ydx_A Type I restriction enzy 36.2 7.5 0.00026 39.5 0.0 12 220-231 83-94 (406)
16 3og6_B Interleukin 28 receptor 33.8 9 0.00031 37.8 0.1 38 46-86 188-225 (226)
17 2v84_A Spermidine/putrescine A 33.7 8.7 0.0003 37.9 0.0 14 79-92 2-15 (343)
18 2onk_C Molybdate/tungstate ABC 33.2 24 0.00081 34.6 3.0 21 79-99 3-23 (284)
19 3vmt_A Monofunctional glycosyl 31.0 8.8 0.0003 39.2 -0.5 13 441-453 249-261 (263)
20 3cio_A ETK, tyrosine-protein k 30.2 12 0.00042 37.4 0.4 34 222-255 106-139 (299)
21 3k6j_A Protein F01G10.3, confi 29.9 11 0.00038 40.9 0.0 14 74-88 446-459 (460)
22 2ew1_A RAS-related protein RAB 29.7 11 0.00038 34.7 0.0 11 80-90 2-12 (201)
23 3uau_A JLPA, surface-exposed l 29.5 11 0.00039 39.0 0.0 48 316-368 213-261 (379)
24 3hgf_A Rhoptry protein fragmen 28.3 20 0.00068 31.7 1.3 38 83-123 1-38 (107)
25 2c07_A 3-oxoacyl-(acyl-carrier 28.1 12 0.00042 36.2 0.0 67 316-391 159-225 (285)
26 3qx3_A DNA topoisomerase 2-bet 26.9 14 0.00048 43.0 0.2 11 78-88 792-802 (803)
27 3rlb_A THIT; S-component, ECF 26.7 35 0.0012 33.1 2.8 10 82-91 2-11 (192)
28 1s4x_A Integrin beta-3; cell a 25.1 15 0.00052 30.4 0.0 12 81-92 2-13 (67)
29 2y3s_A TAML; oxidoreductase; H 24.5 16 0.00054 40.0 0.0 13 80-92 2-14 (530)
30 2r9r_B Paddle chimera voltage 24.4 16 0.00054 39.8 0.0 23 357-379 320-342 (514)
31 2lt9_A Protein SLC8A3; NCX, NC 30.1 16 0.00055 34.5 0.0 11 81-91 3-13 (157)
32 1xvq_A Thiol peroxidase; thior 24.2 15 0.00051 33.0 -0.2 11 77-87 165-175 (175)
33 2vhh_A CG3027-PA; hydrolase; 2 24.0 16 0.00056 38.4 0.0 19 72-90 386-404 (405)
34 3ne5_A Cation efflux system pr 23.9 41 0.0014 39.4 3.3 10 83-92 1-10 (1054)
35 4f27_A Clumping factor B; DEV- 23.8 17 0.00057 36.9 0.0 10 80-90 3-12 (363)
36 2es4_D Lipase chaperone; prote 23.7 17 0.00057 38.1 0.0 13 219-232 67-79 (332)
37 3f2b_A DNA-directed DNA polyme 23.3 18 0.00061 43.3 0.1 13 77-89 1029-1041(1041)
38 3v5u_A Uncharacterized membran 23.2 17 0.00059 37.5 0.0 9 80-88 312-320 (320)
39 3c3r_A Programmed cell death 6 22.9 16 0.00054 38.3 -0.4 19 80-98 3-21 (380)
40 1jr2_A Uroporphyrinogen-III sy 22.7 18 0.00061 35.6 0.0 12 446-457 249-260 (286)
41 1lbd_A RXR_LBD, retinoid X rec 22.5 18 0.00062 35.6 0.0 17 80-96 2-18 (282)
42 4faj_A PRGZ; substrate binding 21.3 20 0.00068 37.6 0.0 62 483-547 374-447 (564)
43 3kl4_B DPAP B, YSCV, signal pe 21.1 26 0.0009 26.1 0.6 7 82-88 36-42 (42)
44 2khi_A 30S ribosomal protein S 21.0 20 0.0007 31.2 0.0 13 80-92 2-14 (115)
45 2bgs_A Aldose reductase; holoe 21.0 20 0.0007 36.9 0.0 23 80-103 2-24 (344)
46 3ol1_A Vimentin; structural ge 20.8 21 0.00071 32.0 0.0 11 80-90 2-12 (119)
47 3oti_A CALG3; calicheamicin, T 20.5 21 0.00073 35.7 0.0 25 82-106 4-28 (398)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.57 E-value=2.2e-14 Score=150.70 Aligned_cols=293 Identities=15% Similarity=0.227 Sum_probs=165.0
Q ss_pred CCCCcEEEEEeC-C-ChhhHHHHHHHHHHHHHHhcce----EeecccCCCCccCCC------CCCcccccHHHHHHHccc
Q 006724 218 KKTNGYIVVHAN-G-GLNQMRTGICDMVAVAKIMNAT----LVLPLLDHESFWTDP------SDFKDIFDWRHFMNVLKD 285 (633)
Q Consensus 218 ~~snGYL~V~~n-G-GLNQqR~~IcDAVaVARiLNAT----LVlP~L~~~S~WkD~------S~F~DIFD~dhFI~sL~~ 285 (633)
...++||+-..+ | |.|+||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++++. .
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----K 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----T
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----h
Confidence 467899998864 5 8999999999999999999999 999966432235442 3799999998754 4
Q ss_pred cceeeccCchhhhc-cCC---------------------C--------c-cCCCCCCCchhhh----hhccccccccceE
Q 006724 286 DVNIVEYLPTRYAR-KKP---------------------L--------L-KAPVSWSKASYYR----NEMVPLLKKHKVI 330 (633)
Q Consensus 286 dVrIVk~LP~~l~~-~~p---------------------~--------~-k~p~~ws~~~yY~----~~VlP~L~k~~VI 330 (633)
.|+|+.- +++.. ..+ . . ..+....+..++. +..........-+
T Consensus 95 ~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~ 172 (408)
T 4ap5_A 95 NIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCL 172 (408)
T ss_dssp TSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEE
T ss_pred hCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeE
Confidence 5555521 11100 000 0 0 0000000000000 0000000111111
Q ss_pred EEecCCc----------------------ccccCCCCcchhhhhchhcccccccchhHHHHHHHHHHHHHhCCCCeEEEe
Q 006724 331 KFSHTDS----------------------RLANNGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPYVALH 388 (633)
Q Consensus 331 ~l~~fd~----------------------RLa~d~lP~diQrLRCrvnf~ALrF~~~I~eLg~kLV~RMR~~~gpYIALH 388 (633)
.+.+..+ .|+...-..+...+ -..|+|.+.|.+.|+..++..- .++|+++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L--~~~~~~~h 245 (408)
T 4ap5_A 173 SVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHL--NSTDDADR 245 (408)
T ss_dssp EECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHH--CCCTTTTT
T ss_pred EEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHh--Ccccceee
Confidence 1211111 11111000011111 1369999999999999987665 35888888
Q ss_pred cccchhhhhhhcCCCCCCHHHHHHHHHHhhhcccccccccchHhhhh-CCCCCCCHHHHHHHHHHhCCCCCcEEEEEecc
Q 006724 389 LRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRL-QGGCPMSPREAALFLKALGYPSTTTIYIVAGE 467 (633)
Q Consensus 389 LR~EkDMLAfsgC~~g~~~~E~~eL~~~R~~~~~Wk~k~i~~~e~R~-~G~CPLTPeEvgl~LraLGf~~~T~IYLAsGe 467 (633)
+|.+.|+... |....... .--+...||+..+- ... ...||-.+.-+..+.+.+-=-+-+.||||+=+
T Consensus 246 ~r~~~dw~~~--~~~~~~~~------~~~y~~~H~Rr~d~----~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~ 313 (408)
T 4ap5_A 246 IPFQEDWMKM--KVKLGSAL------GGPYLGVHLRRKDF----IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA 313 (408)
T ss_dssp CCCCSSGGGC--CCCTTCBC------CEEEEEEEECCTTT----TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC
T ss_pred cccchhHhhh--hccccccc------CCCccccccccccc----hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 8888888764 43321100 00011123332210 011 12233333323333333332244579999864
Q ss_pred ccCCCc-hhhHHHhCCcccccccCCChhhccccCCchhhhhhhhhhhhccCCeeeecCCCcHHHHHhhhhhccCCc
Q 006724 468 IYGSSS-MAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEGFR 542 (633)
Q Consensus 468 iyGg~s-L~pLk~~FPnl~TKetLas~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 542 (633)
.+. +..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.-.|.+.|+.
T Consensus 314 ---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 314 ---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLD 382 (408)
T ss_dssp ---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred ---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCC
Confidence 244 7889999987764322 23444444 24467999999999999999999999999999999999986
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.29 E-value=6.2e-11 Score=124.43 Aligned_cols=266 Identities=21% Similarity=0.311 Sum_probs=159.5
Q ss_pred CCCcEEEEE-eCCChhhHHHHHHHHHHHHHHhcceEeecccCCCCccCCCC---CCcccccHHHHHHHccccceeec---
Q 006724 219 KTNGYIVVH-ANGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTDPS---DFKDIFDWRHFMNVLKDDVNIVE--- 291 (633)
Q Consensus 219 ~snGYL~V~-~nGGLNQqR~~IcDAVaVARiLNATLVlP~L~~~S~WkD~S---~F~DIFD~dhFI~sL~~dVrIVk--- 291 (633)
..||||+-= |-|-..||-....-+.+.|+.||.|||||-+-.-. .-.+ .|++.|+++. |+..-|||.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~--~~~~~~vpf~~yF~v~~----l~~yhrvi~me~ 79 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFK--HPETKMIPFEFLFQVGT----VAKYTRVVTMQE 79 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECS--SSSCEEECHHHHBCHHH----HTTTSCEECHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCcccccc--CCcccccchhheeecch----hhhhceeeeHHH
Confidence 369999885 99999999999999999999999999999764211 1113 4888888875 333334441
Q ss_pred ---cC-----chhhh-------------cc---CCCcc--CC---------CCCCCchh------------------hhh
Q 006724 292 ---YL-----PTRYA-------------RK---KPLLK--AP---------VSWSKASY------------------YRN 318 (633)
Q Consensus 292 ---~L-----P~~l~-------------~~---~p~~k--~p---------~~ws~~~y------------------Y~~ 318 (633)
+| |.+-. +. .-..| .| +...+-.+ +.+
T Consensus 80 Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~~ 159 (362)
T 3zy2_A 80 FTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWLE 159 (362)
T ss_dssp HHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHHH
T ss_pred HHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHHH
Confidence 11 11000 00 00000 00 00000011 111
Q ss_pred hccccccccceEEEecCCc----ccccCCCCcchhhhhchhcccccccchhHHHHHHHHHHHHHhCCCCeEEEecccchh
Q 006724 319 EMVPLLKKHKVIKFSHTDS----RLANNGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPYVALHLRYEKD 394 (633)
Q Consensus 319 ~VlP~L~k~~VI~l~~fd~----RLa~d~lP~diQrLRCrvnf~ALrF~~~I~eLg~kLV~RMR~~~gpYIALHLR~EkD 394 (633)
..-| .+|-|+.|++.-. +..+ -.||| -|+++++|.+.|++.|+.-- .+||||+|||--.|
T Consensus 160 ~~p~--~~~pVlAf~gaPa~FPv~~e~----r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--~rpyVgIHLR~G~D 223 (362)
T 3zy2_A 160 KFPS--EEYPVLAFSSAPAPFPSKGKV----WSIQK--------YLRWSSRITEQAKKFISANL--AKPFVAVHLRNDAD 223 (362)
T ss_dssp HSCT--TTCSEEEESSCSSCSSCCGGG----GGGGG--------GCCBCHHHHHHHHHHHHHHC--CSSEEEEEECCCHH
T ss_pred hCCc--ccCceEeecCCCCCCCcChhh----HhHHH--------hccccHHHHHHHHHHHHHhc--CCCeEEEEEecCCc
Confidence 1112 2567887765221 1111 13565 39999999999999888743 46999999999999
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHhhhcccccccccchHh----hhhCC-----CCCCCHHH----HHHHHHHhCCCCCcEE
Q 006724 395 MLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIK----RRLQG-----GCPMSPRE----AALFLKALGYPSTTTI 461 (633)
Q Consensus 395 MLAfsgC~~g~~~~E~~eL~~~R~~~~~Wk~k~i~~~e----~R~~G-----~CPLTPeE----vgl~LraLGf~~~T~I 461 (633)
+.-. |.+--..+ . ++. ..+++ +...| .|==+.++ |..+++.++ -..|
T Consensus 224 W~~a--C~hlk~~~-------~----~~l----faSPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~---lksV 283 (362)
T 3zy2_A 224 WVRV--CEHIDTTT-------N----RPL----FASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIG---AKSV 283 (362)
T ss_dssp HHHH--HHTCCTTT-------C----CCC----TTTHHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHT---CSEE
T ss_pred HHHH--Hhhhcccc-------C----ccc----ccCCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcC---CcEE
Confidence 9876 86521000 0 000 00100 00111 23113333 344555555 4569
Q ss_pred EEEeccccCCCchhhHHHhCCcccccccCCChhhccccCCchhhhhhhhhhhhccCCeeeecCCCcHHHHHhhhhhccC
Q 006724 462 YIVAGEIYGSSSMAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEG 540 (633)
Q Consensus 462 YLAsGeiyGg~sL~pLk~~FPnl~TKetLas~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G 540 (633)
|||+-.. ..+.-|++.|+....+ +.+ +... .|+||.+||.+||+||+|..++|+..|.-.|-..|
T Consensus 284 FIATDa~---~~~~ELk~~L~~~~v~--vv~------~~pe---~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 284 FVASDKD---HMIDEINEALKPYEIE--AHR------QEPD---DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp EEEESSC---CCHHHHHHHHGGGTCC--EEC------CSSC---CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred EEecCCH---HHHHHHHHHhhccCce--EEE------eCCc---hhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 9998542 2377888888642111 111 1111 79999999999999999999999999999999888
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.82 E-value=0.0036 Score=69.01 Aligned_cols=254 Identities=14% Similarity=0.151 Sum_probs=140.4
Q ss_pred CcEEEEEe--CCChhhHHHHHHHHHHHHHHhcceEeecccCCCCccCC-CCCCcccccHHHHHHHccccceeeccCchhh
Q 006724 221 NGYIVVHA--NGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTD-PSDFKDIFDWRHFMNVLKDDVNIVEYLPTRY 297 (633)
Q Consensus 221 nGYL~V~~--nGGLNQqR~~IcDAVaVARiLNATLVlP~L~~~S~WkD-~S~F~DIFD~dhFI~sL~~dVrIVk~LP~~l 297 (633)
..||+... -.|+..+-..++-|..+|..+|.|||+-.-. |.- ...|+++|.. +. ..+.-
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s----~~C~~-------- 206 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VS----ETCTD-------- 206 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SC----SSCCC--------
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cC----ccccC--------
Confidence 36788876 5799999999999999999999999995432 432 2467777764 11 11111
Q ss_pred hccCCCccCCCCCCCchhhhhhccccccccceEEEecCCc-----ccccCCCCcc----hhhhhc-------h-hccccc
Q 006724 298 ARKKPLLKAPVSWSKASYYRNEMVPLLKKHKVIKFSHTDS-----RLANNGLAGS----IQRLRC-------R-ANYEAL 360 (633)
Q Consensus 298 ~~~~p~~k~p~~ws~~~yY~~~VlP~L~k~~VI~l~~fd~-----RLa~d~lP~d----iQrLRC-------r-vnf~AL 360 (633)
+....+..|..... -..+.||.+...++ +...-.+|.+ ++++.- . +.-..+
T Consensus 207 ----~~~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl~ 274 (526)
T 2de0_X 207 ----RSGISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLI 274 (526)
T ss_dssp ----CCCSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ----CCccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHHc
Confidence 00111223422110 01334443322111 1111123433 223210 0 111147
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCeEEEecccchhhhhhhcCCCCCCHHHHHHHHHHhhhcccccccccchHhhhhCCCCC
Q 006724 361 RYSKDIEDLGKILVDRLRNNSEPYVALHLRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRLQGGCP 440 (633)
Q Consensus 361 rF~~~I~eLg~kLV~RMR~~~gpYIALHLR~EkDMLAfsgC~~g~~~~E~~eL~~~R~~~~~Wk~k~i~~~e~R~~G~CP 440 (633)
|+.++|++..+.+...+.- ++|.|+||.|-- |-+..- ...-+ ++.|-..+
T Consensus 275 rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E---~~~~~-----~~~Y~~~v-------------------- 324 (526)
T 2de0_X 275 RPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTE---AAFHP-----IEEYMVHV-------------------- 324 (526)
T ss_dssp CBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------C---CCSCS-----HHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCccc---cccCC-----HHHHHHHH--------------------
Confidence 8999999999998888754 689999999964 332211 11111 01111000
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEEeccccCCCchhhHHHhCCcc--cccccCCC-hhhccccCCchhhhhhhhhhhhccC
Q 006724 441 MSPREAALFLKALGYPSTTTIYIVAGEIYGSSSMAAFREEFPNV--FSHSTLAT-EEELEPFKPYQNRLAALDYLVALES 517 (633)
Q Consensus 441 LTPeEvgl~LraLGf~~~T~IYLAsGeiyGg~sL~pLk~~FPnl--~TKetLas-~eEL~pF~~~ss~lAALDYiVcl~S 517 (633)
++.-..|+.......+.||||+-+. +-++-+++.||+. ++-..... ...-..+...+-..+.+|.++.++|
T Consensus 325 ---~~~~~~l~~~~~~~~~~ifLATDDp---~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~c 398 (526)
T 2de0_X 325 ---EEHFQLLARRMQVDKKRVYLATDDP---SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQA 398 (526)
T ss_dssp ---HHHHHHHHTTSCCSSCEEEEEESCH---HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHhhcCCCCCeEEEEcCCH---HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcC
Confidence 1111123333567889999998763 2277788889985 32211111 1111112111225689999999999
Q ss_pred CeeeecCCCcHHHHHhhhhhccC
Q 006724 518 DVFVHTYDGNMAKAVQGHRRFEG 540 (633)
Q Consensus 518 DVFV~t~~GNfa~~V~GhR~y~G 540 (633)
|+||+|.++||++++...|.-.+
T Consensus 399 d~~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 399 DFLVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp SEEEECTTSHHHHHHHHHHTTSS
T ss_pred CeeecCCCCHHHHHHHHHhcCcC
Confidence 99999999999999887665443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.82 E-value=0.00047 Score=69.94 Aligned_cols=265 Identities=11% Similarity=0.186 Sum_probs=127.3
Q ss_pred CCcEEEEEeCCChhhHHHHHHHHHHHHHHhcceEeecccCCCCccCCCCCCcccccHHHHHHHccc-c-ceeecc-Cchh
Q 006724 220 TNGYIVVHANGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTDPSDFKDIFDWRHFMNVLKD-D-VNIVEY-LPTR 296 (633)
Q Consensus 220 snGYL~V~~nGGLNQqR~~IcDAVaVARiLNATLVlP~L~~~S~WkD~S~F~DIFD~dhFI~sL~~-d-VrIVk~-LP~~ 296 (633)
+..||++...|||.+|=-+++-|.++|.+.|.+|+|--.. ..|-. ..|.+.| .-.|. .... . ..+... .|..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f-p~~F~-~v~~~~~~~~~~~~~~~~ 77 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF-PAFFE-PVEDIAGVPVICDDRVNQ 77 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH-HHHBC-CCSEETTEEEECSGGGGT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC-ccccc-chhhhcccceeccccccc
Confidence 4579999999999999999999999999999998886443 22221 3455666 22232 1110 0 011110 0100
Q ss_pred hhccCCCccCCCCCCCch---hh--hhhccc-------cc--ccc-ceEEEecCCcccccCCCCcchhhhhchhcccccc
Q 006724 297 YARKKPLLKAPVSWSKAS---YY--RNEMVP-------LL--KKH-KVIKFSHTDSRLANNGLAGSIQRLRCRANYEALR 361 (633)
Q Consensus 297 l~~~~p~~k~p~~ws~~~---yY--~~~VlP-------~L--~k~-~VI~l~~fd~RLa~d~lP~diQrLRCrvnf~ALr 361 (633)
. .. +....|.-|.... .| .+++.| ++ ..+ ...++.+ +.. +...++.-.-...|.-|+
T Consensus 78 ~-~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~-----~~w~~~~~~~~~i~~yl~ 149 (330)
T 2hhc_A 78 L-SF-PGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVC-DAC-----LMWRCSEEAERLIFRNIK 149 (330)
T ss_dssp C-CC-CSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEE-CSC-----CTTSSCHHHHHHHHHHSC
T ss_pred c-cC-CCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEc-ccc-----cccchhhhhHHHHHhcCC
Confidence 0 00 0000011121111 11 122221 11 011 0011221 000 000111111122356789
Q ss_pred cchhHHHHHHHHHHHHHhCCCCeEEEecccchhhhhhhcCCCCCCHHHHHHHHHHhhhcccccccccchHhhhhCCCCCC
Q 006724 362 YSKDIEDLGKILVDRLRNNSEPYVALHLRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRLQGGCPM 441 (633)
Q Consensus 362 F~~~I~eLg~kLV~RMR~~~gpYIALHLR~EkDMLAfsgC~~g~~~~E~~eL~~~R~~~~~Wk~k~i~~~e~R~~G~CPL 441 (633)
++++|++..+.+.+.+-. +.++||||.|.=.+. ..|.++. .|.+. .||
T Consensus 150 p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD~~---~~~~~~~----------------~~~~~-----------~~~- 197 (330)
T 2hhc_A 150 LRSEIRARIDALYEEHFS-GHSIIGVHVRHGNGE---DIMEHAP----------------YWADS-----------ELA- 197 (330)
T ss_dssp BCHHHHHHHHHHHHHHTT-TSEEEEEEECC-------------------------------CHHH-----------HHH-
T ss_pred ccHHHHHHHHHHHHHhcc-CCceEEEEEecCCCC---cccccCc----------------chHHH-----------hHH-
Confidence 999999999888865423 369999999965321 1232211 11111 011
Q ss_pred CHHHHHHHHHHh-C-CC-CCcEEEEEeccccCCCchhhHHHhCCcccccc-cCCChhhccccCC----chhhhhhhhhhh
Q 006724 442 SPREAALFLKAL-G-YP-STTTIYIVAGEIYGSSSMAAFREEFPNVFSHS-TLATEEELEPFKP----YQNRLAALDYLV 513 (633)
Q Consensus 442 TPeEvgl~LraL-G-f~-~~T~IYLAsGeiyGg~sL~pLk~~FPnl~TKe-tLas~eEL~pF~~----~ss~lAALDYiV 513 (633)
-++.-.-++.+ . .+ .+..||||+-+. +-++-|++.||++.+-. .+.....-.-... -..+.+.+|.+.
T Consensus 198 -l~~~~~~i~~~~~~~~~~~~~vfvaSDd~---~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~L 273 (330)
T 2hhc_A 198 -LHQVCMAIRKAKALSYPKPVKVFLCTDSA---QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYL 273 (330)
T ss_dssp -HHHHHHHHHHHHTSCCSSCEEEEEEESCH---HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccCcCceEEEEEeCCH---HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHH
Confidence 11111111111 1 12 468899998774 22778999999753321 1110000000000 123568899999
Q ss_pred hccCCeee-ecCCCcHHHHHh
Q 006724 514 ALESDVFV-HTYDGNMAKAVQ 533 (633)
Q Consensus 514 cl~SDVFV-~t~~GNfa~~V~ 533 (633)
..+||.+| ....++|+...+
T Consensus 274 LS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 274 LARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HTTCSEEEEESTTCGGGHHHH
T ss_pred HHcCCeeEECCCCCCHHHHHH
Confidence 99999999 555888888776
No 5
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=73.15 E-value=1.5 Score=46.21 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 006724 119 MVVLMFMAVVSVFVKAP 135 (633)
Q Consensus 119 ~~~l~~~~~~s~~~~~~ 135 (633)
+++|.+++++.++.++.
T Consensus 34 ~~~l~~~l~~~~~~sl~ 50 (357)
T 4g1u_A 34 LGFLLILLVILALGSAN 50 (357)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554443
No 6
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=70.45 E-value=2.1 Score=40.56 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=21.1
Q ss_pred cchhhHHhhhhhhhhhc-----c------------cccccchhhHHHHHHHHHHHHHHHhhhc
Q 006724 89 QGVRCHRALRRKLCAFL-----P------------DACLGKNMVRKVMVVLMFMAVVSVFVKA 134 (633)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-----~------------~~~~~~~~~~~~~~~l~~~~~~s~~~~~ 134 (633)
+.+..++.+|||..|++ | |+... .|-|+-....++|-+++|...
T Consensus 16 ~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~d--sgeRvslgit~LLs~tvfl~~ 76 (164)
T 2ksr_A 16 ENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSD--CGEKMTLCISVLLALTVFLLL 76 (164)
T ss_dssp ---------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCC--CCCeEEEeeehHHHHHHHHHH
Confidence 44666899999987754 4 34432 266666556666666666644
No 7
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=59.32 E-value=3.1 Score=42.05 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.8
Q ss_pred hhhHHHhCCccc
Q 006724 474 MAAFREEFPNVF 485 (633)
Q Consensus 474 L~pLk~~FPnl~ 485 (633)
|.|-|+.-|.++
T Consensus 211 ~NPAR~lGPal~ 222 (256)
T 3llq_A 211 VNPARSTGQALF 222 (256)
T ss_dssp SCHHHHHHHHHH
T ss_pred cChHHHHHHHHH
Confidence 455555444443
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=54.85 E-value=6.4 Score=36.57 Aligned_cols=16 Identities=6% Similarity=-0.024 Sum_probs=6.0
Q ss_pred cccchhhHHHHHHHHH
Q 006724 109 CLGKNMVRKVMVVLMF 124 (633)
Q Consensus 109 ~~~~~~~~~~~~~l~~ 124 (633)
|.++.+.++++.++++
T Consensus 42 r~~~~l~~~~~~~~~~ 57 (155)
T 2a9h_A 42 RHGSALHWRAAGAATV 57 (155)
T ss_dssp ----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355555555544433
No 9
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=47.54 E-value=3.9 Score=40.53 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=0.0
Q ss_pred CCCCcccCCcchh
Q 006724 80 GPHDHFHNHQGVR 92 (633)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (633)
|+.|||||||..+
T Consensus 2 ~~~~~~~~~~~~~ 14 (341)
T 3un6_A 2 GSSHHHHHHENLY 14 (341)
T ss_dssp -------------
T ss_pred CCccccccchhHH
Confidence 4445667777665
No 10
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=44.71 E-value=11 Score=34.80 Aligned_cols=40 Identities=10% Similarity=-0.082 Sum_probs=22.1
Q ss_pred hHHhhhhhhhhhc-----c------------cccccchhhHHHHHHHHHHHHHHHhhhc
Q 006724 93 CHRALRRKLCAFL-----P------------DACLGKNMVRKVMVVLMFMAVVSVFVKA 134 (633)
Q Consensus 93 ~~~~~~~~~~~~~-----~------------~~~~~~~~~~~~~~~l~~~~~~s~~~~~ 134 (633)
..+.||||..|++ | |+... .|-|+-....++|-+++|...
T Consensus 41 ~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~d--sgeRvslgit~lLs~tvfl~~ 97 (140)
T 2lkg_A 41 QEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTD--SGEKMTESKSVLKSLTEKLKK 97 (140)
T ss_dssp HTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCS--SSHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCC--CCCEEEEeeehHHHHHHHHHH
Confidence 3466788877653 4 33332 355555555555555666544
No 11
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=43.69 E-value=5.1 Score=42.03 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=0.4
Q ss_pred CCCCCCCCCcccCC
Q 006724 75 NGSFSGPHDHFHNH 88 (633)
Q Consensus 75 ~~~~~~~~~~~~~~ 88 (633)
.+|.++.|||||||
T Consensus 400 ~~~~~~~~~~~~~~ 413 (413)
T 3ne5_B 400 SESATHAHHHHHHH 413 (413)
T ss_dssp C-------------
T ss_pred ccccccccccccCC
Confidence 44556667776666
No 12
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=41.55 E-value=9.7 Score=37.18 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=1.9
Q ss_pred CCcccCCcchh
Q 006724 82 HDHFHNHQGVR 92 (633)
Q Consensus 82 ~~~~~~~~~~~ 92 (633)
|||||||++..
T Consensus 2 ~~~~~~~~am~ 12 (198)
T 4dve_A 2 HHHHHHHHAMT 12 (198)
T ss_dssp --------CCC
T ss_pred CcchhhHHHhh
Confidence 66667777666
No 13
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=39.30 E-value=6.3 Score=35.50 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCcccCCc-chhhHH
Q 006724 80 GPHDHFHNHQ-GVRCHR 95 (633)
Q Consensus 80 ~~~~~~~~~~-~~~~~~ 95 (633)
|+|||||||+ +-..||
T Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (108)
T 2lwx_A 3 GSHHHHHHHHGSENLYF 19 (108)
T ss_dssp -----------------
T ss_pred CcccccccccCchhHHH
Confidence 5666655554 444444
No 14
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=38.51 E-value=6.6 Score=37.62 Aligned_cols=11 Identities=36% Similarity=0.761 Sum_probs=0.0
Q ss_pred CCcccCCcchh
Q 006724 82 HDHFHNHQGVR 92 (633)
Q Consensus 82 ~~~~~~~~~~~ 92 (633)
|||||||++-.
T Consensus 5 ~~~~~~~~~~~ 15 (291)
T 2yjp_A 5 HHHHHHHHSSG 15 (291)
T ss_dssp -----------
T ss_pred ccccccccccC
Confidence 44445555544
No 15
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=36.17 E-value=7.5 Score=39.47 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=6.9
Q ss_pred CCcEEEEEeCCC
Q 006724 220 TNGYIVVHANGG 231 (633)
Q Consensus 220 snGYL~V~~nGG 231 (633)
..|-|++...|.
T Consensus 83 ~~gdili~~~g~ 94 (406)
T 1ydx_A 83 FKNTISVIVGGS 94 (406)
T ss_dssp CSSCEEEECBSS
T ss_pred CCCCEEEEecCC
Confidence 346666666553
No 16
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor); helical bundle, fibronectin type III domain, beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A {Homo sapiens} PDB: 3og4_B*
Probab=33.84 E-value=9 Score=37.77 Aligned_cols=38 Identities=32% Similarity=0.224 Sum_probs=7.9
Q ss_pred CCCCCCCCcCCCchhhhhccCCCCCCCCCCCCCCCCCCccc
Q 006724 46 PNIPSDYSYYISDEEESNSINNANNSSSFNGSFSGPHDHFH 86 (633)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (633)
.+.++.||+..=...+ -++.+-.+++|||+..+|||||
T Consensus 188 ~~k~s~fS~~~C~~~~---~~~~~~~~~~~~~~~~~~~~~~ 225 (226)
T 3og6_B 188 VPKYSKFSKPTCFLLE---VPEANASGSSGGSSGTSHHHHH 225 (226)
T ss_dssp SEEECCCCCCEEEECC---CC--------------------
T ss_pred CCCcCCCCCCEeEeCC---CCCcceeccCCCCCCccccccC
Confidence 3566777774221111 1234445555665544455444
No 17
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=33.72 E-value=8.7 Score=37.87 Aligned_cols=14 Identities=43% Similarity=0.923 Sum_probs=0.0
Q ss_pred CCCCCcccCCcchh
Q 006724 79 SGPHDHFHNHQGVR 92 (633)
Q Consensus 79 ~~~~~~~~~~~~~~ 92 (633)
+|+||||||..+|.
T Consensus 2 ~~~~~~~~~~~~~~ 15 (343)
T 2v84_A 2 SGSHHHHHHSSGIE 15 (343)
T ss_dssp --------------
T ss_pred CCcccccccccccc
Confidence 57788877777776
No 18
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=33.16 E-value=24 Score=34.55 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCCcccCCcchhhHHhhhh
Q 006724 79 SGPHDHFHNHQGVRCHRALRR 99 (633)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ 99 (633)
+++|+|||||++.+-....|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (284)
T 2onk_C 3 HHHHHHHHHHSSGENLYFQGH 23 (284)
T ss_dssp ---------------------
T ss_pred CccccccccccchhhHHHHHH
Confidence 445666778888774444443
No 19
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=30.99 E-value=8.8 Score=39.22 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHh
Q 006724 441 MSPREAALFLKAL 453 (633)
Q Consensus 441 LTPeEvgl~LraL 453 (633)
+|++|....++.|
T Consensus 249 It~~e~~~A~~el 261 (263)
T 3vmt_A 249 INETQYQQAMSQL 261 (263)
T ss_dssp SCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh
Confidence 4455555444444
No 20
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.16 E-value=12 Score=37.37 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=20.8
Q ss_pred cEEEEEeCCChhhHHHHHHHHHHHHHHhcceEee
Q 006724 222 GYIVVHANGGLNQMRTGICDMVAVAKIMNATLVL 255 (633)
Q Consensus 222 GYL~V~~nGGLNQqR~~IcDAVaVARiLNATLVl 255 (633)
-.++.+..||-..==.++.=|.+.|+.=.-+|+|
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 3444456788887666666677777642244555
No 21
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=29.89 E-value=11 Score=40.90 Aligned_cols=14 Identities=57% Similarity=0.942 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcccCC
Q 006724 74 FNGSFSGPHDHFHNH 88 (633)
Q Consensus 74 ~~~~~~~~~~~~~~~ 88 (633)
.+++ +|+|||||||
T Consensus 446 ~~~~-~~~~~~~~~~ 459 (460)
T 3k6j_A 446 SSGS-SGGHHHHHHH 459 (460)
T ss_dssp ---------------
T ss_pred Cccc-cCCCcccccC
Confidence 3444 4555554444
No 22
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=29.74 E-value=11 Score=34.73 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=0.0
Q ss_pred CCCCcccCCcc
Q 006724 80 GPHDHFHNHQG 90 (633)
Q Consensus 80 ~~~~~~~~~~~ 90 (633)
|+.|||||||.
T Consensus 2 ~~~~~~~~~~~ 12 (201)
T 2ew1_A 2 GSSHHHHHHSS 12 (201)
T ss_dssp -----------
T ss_pred Ccccccccccc
Confidence 34456667775
No 23
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=29.53 E-value=11 Score=39.03 Aligned_cols=48 Identities=27% Similarity=0.464 Sum_probs=19.5
Q ss_pred hhhhccccccccceEEEecCCcccccCCCCcchhhhhchhccc-ccccchhHHH
Q 006724 316 YRNEMVPLLKKHKVIKFSHTDSRLANNGLAGSIQRLRCRANYE-ALRYSKDIED 368 (633)
Q Consensus 316 Y~~~VlP~L~k~~VI~l~~fd~RLa~d~lP~diQrLRCrvnf~-ALrF~~~I~e 368 (633)
|.+..+-.|...|| .+.. ..||-|+ .-+..|--.|+|+ +-.|...||+
T Consensus 213 ~Ke~l~~~ld~~gi-KfnT--qtla~d~--qa~~E~l~~~~yeq~sdF~n~iqe 261 (379)
T 3uau_A 213 LKEDLLNYLDSKGI-KFNT--QTLAMDE--QAINELLNMVNYEQASDFSNTIQK 261 (379)
T ss_dssp EEHHHHHHHHHTTC-EECT--TTCSEEC--CTHHHHHC-------CCTHHHHGG
T ss_pred hHHHHHHHHHHhCc-cccc--eeeeecH--HHHHHHHhhhhhhhhhhhhhhHHH
Confidence 45556666666663 2211 1244332 1123333455665 5566666664
No 24
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding protein; 4.00A {Plasmodium yoelii yoelii}
Probab=28.26 E-value=20 Score=31.68 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=22.0
Q ss_pred CcccCCcchhhHHhhhhhhhhhcccccccchhhHHHHHHHH
Q 006724 83 DHFHNHQGVRCHRALRRKLCAFLPDACLGKNMVRKVMVVLM 123 (633)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (633)
|||||||.++ -+-+|+-..+--.-..+|.+..|=-||-
T Consensus 1 ~~~~~~~~~~---~~ekKi~nIVtKIDkkKnIy~~inKLln 38 (107)
T 3hgf_A 1 HHHHHHPMVK---EIEKKIENIVTKIDKKKYIYDNMKKLLN 38 (107)
T ss_dssp ------CCST---THHHHHHHHTHHHHTTHHHHHHHHHHHH
T ss_pred CCcccchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5788999998 4556666666666677787777766553
No 25
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=28.06 E-value=12 Score=36.18 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=32.4
Q ss_pred hhhhccccccccceEEEecCCcccccCCCCcchhhhhchhcccccccchhHHHHHHHHHHHHHhCCCCeEEEeccc
Q 006724 316 YRNEMVPLLKKHKVIKFSHTDSRLANNGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPYVALHLRY 391 (633)
Q Consensus 316 Y~~~VlP~L~k~~VI~l~~fd~RLa~d~lP~diQrLRCrvnf~ALrF~~~I~eLg~kLV~RMR~~~gpYIALHLR~ 391 (633)
..+.++|.+++.++-+|.-..+-.+..+.|. + ..|.+-+. .++.+...+...+...+-++.+++..+
T Consensus 159 l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~--~-----~~Y~asK~--a~~~~~~~la~e~~~~gi~v~~v~Pg~ 225 (285)
T 2c07_A 159 ITQPISKRMINNRYGRIINISSIVGLTGNVG--Q-----ANYSSSKA--GVIGFTKSLAKELASRNITVNAIAPGF 225 (285)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCTHHHHCCTT--C-----HHHHHHHH--HHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCEEEEECChhhccCCCC--C-----chHHHHHH--HHHHHHHHHHHHHHHhCcEEEEEEeCc
Confidence 4566777776654334433333222222232 1 12332221 245556666666655555677777654
No 26
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=26.94 E-value=14 Score=42.97 Aligned_cols=11 Identities=36% Similarity=0.646 Sum_probs=0.0
Q ss_pred CCCCCCcccCC
Q 006724 78 FSGPHDHFHNH 88 (633)
Q Consensus 78 ~~~~~~~~~~~ 88 (633)
+.++|||||||
T Consensus 792 ~~~~~~~~~~~ 802 (803)
T 3qx3_A 792 SAHHHHHHHHH 802 (803)
T ss_dssp -----------
T ss_pred hhhcccccccC
Confidence 34444444444
No 27
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=26.69 E-value=35 Score=33.08 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=0.0
Q ss_pred CCcccCCcch
Q 006724 82 HDHFHNHQGV 91 (633)
Q Consensus 82 ~~~~~~~~~~ 91 (633)
|||||||+..
T Consensus 2 ~~~~~~~~~~ 11 (192)
T 3rlb_A 2 HHHHHHHHAM 11 (192)
T ss_dssp ----------
T ss_pred Cccchhhhhh
Confidence 4555555543
No 28
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=25.09 E-value=15 Score=30.41 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=0.0
Q ss_pred CCCcccCCcchh
Q 006724 81 PHDHFHNHQGVR 92 (633)
Q Consensus 81 ~~~~~~~~~~~~ 92 (633)
+.+|||||..|.
T Consensus 2 ~~~~~~~~~liG 13 (67)
T 1s4x_A 2 SSHHHHHHSSGL 13 (67)
T ss_dssp ------------
T ss_pred CcccchhhhHHH
Confidence 345667777777
No 29
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=24.46 E-value=16 Score=39.96 Aligned_cols=13 Identities=46% Similarity=0.999 Sum_probs=0.0
Q ss_pred CCCCcccCCcchh
Q 006724 80 GPHDHFHNHQGVR 92 (633)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (633)
|+|||||||+.-.
T Consensus 2 ~~~~~~~~~~~~~ 14 (530)
T 2y3s_A 2 GSHHHHHHHHGSD 14 (530)
T ss_dssp -------------
T ss_pred CcccccccccCcc
Confidence 5677777777655
No 30
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=24.39 E-value=16 Score=39.84 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=15.1
Q ss_pred ccccccchhHHHHHHHHHHHHHh
Q 006724 357 YEALRYSKDIEDLGKILVDRLRN 379 (633)
Q Consensus 357 f~ALrF~~~I~eLg~kLV~RMR~ 379 (633)
+..+|+.+.++.++..+..-+++
T Consensus 320 lkL~r~~~~l~~l~~tl~~s~~~ 342 (514)
T 2r9r_B 320 FKLSRHSKGLQILGQTLKASMRE 342 (514)
T ss_dssp GGGGGSCHHHHHHHHHHHHTHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHH
Confidence 45566667777777776666554
No 31
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus}
Probab=30.06 E-value=16 Score=34.50 Aligned_cols=11 Identities=45% Similarity=1.072 Sum_probs=7.7
Q ss_pred CCCcccCCcch
Q 006724 81 PHDHFHNHQGV 91 (633)
Q Consensus 81 ~~~~~~~~~~~ 91 (633)
+|||||||.+|
T Consensus 3 ~~~~~~~~~~~ 13 (157)
T 2lt9_A 3 SHHHHHHHAGI 13 (157)
Confidence 47777777665
No 32
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=24.20 E-value=15 Score=33.02 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=1.6
Q ss_pred CCCCCCCcccC
Q 006724 77 SFSGPHDHFHN 87 (633)
Q Consensus 77 ~~~~~~~~~~~ 87 (633)
+.+|+||||||
T Consensus 165 ~~~~~~~~~~~ 175 (175)
T 1xvq_A 165 ATSGSHHHHHH 175 (175)
T ss_dssp HTC--------
T ss_pred hhcCcccccCC
Confidence 35677776654
No 33
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=24.05 E-value=16 Score=38.38 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=0.4
Q ss_pred CCCCCCCCCCCCcccCCcc
Q 006724 72 SSFNGSFSGPHDHFHNHQG 90 (633)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~ 90 (633)
-|++++....|||||||++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~ 404 (405)
T 2vhh_A 386 TQFPGDDDDKHHHHHHHHS 404 (405)
T ss_dssp C------------------
T ss_pred CCCCCCcccccccccccCC
Confidence 3456666666777666653
No 34
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=23.92 E-value=41 Score=39.37 Aligned_cols=10 Identities=40% Similarity=0.953 Sum_probs=0.0
Q ss_pred CcccCCcchh
Q 006724 83 DHFHNHQGVR 92 (633)
Q Consensus 83 ~~~~~~~~~~ 92 (633)
||||||-.++
T Consensus 1 ~~~~~~~~~~ 10 (1054)
T 3ne5_A 1 HHHHHHMGIE 10 (1054)
T ss_dssp ----------
T ss_pred CCccccccHH
Confidence 4556666666
No 35
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=23.78 E-value=17 Score=36.89 Aligned_cols=10 Identities=50% Similarity=1.155 Sum_probs=0.0
Q ss_pred CCCCcccCCcc
Q 006724 80 GPHDHFHNHQG 90 (633)
Q Consensus 80 ~~~~~~~~~~~ 90 (633)
|+||| |||-.
T Consensus 3 ~~~~~-~~~~~ 12 (363)
T 4f27_A 3 GSHHH-HHHEN 12 (363)
T ss_dssp -----------
T ss_pred Ccccc-ccccc
Confidence 45544 44443
No 36
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=23.72 E-value=17 Score=38.09 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=7.3
Q ss_pred CCCcEEEEEeCCCh
Q 006724 219 KTNGYIVVHANGGL 232 (633)
Q Consensus 219 ~snGYL~V~~nGGL 232 (633)
+-+| |.+..+|-|
T Consensus 67 evd~-l~~D~~G~L 79 (332)
T 2es4_D 67 HAPR-LPLAAGGRL 79 (332)
T ss_dssp CCCC-CCBCTTSSB
T ss_pred CCCC-cccCCCCCc
Confidence 3455 556666655
No 37
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=23.32 E-value=18 Score=43.30 Aligned_cols=13 Identities=54% Similarity=0.994 Sum_probs=0.9
Q ss_pred CCCCCCCcccCCc
Q 006724 77 SFSGPHDHFHNHQ 89 (633)
Q Consensus 77 ~~~~~~~~~~~~~ 89 (633)
-++|+|||||||+
T Consensus 1029 ~f~~~~~~~~~~~ 1041 (1041)
T 3f2b_A 1029 LFSGGHHHHHHHH 1041 (1041)
T ss_dssp CC-----------
T ss_pred hhcCCCcccccCC
Confidence 3567777766663
No 38
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=23.21 E-value=17 Score=37.48 Aligned_cols=9 Identities=44% Similarity=0.922 Sum_probs=0.0
Q ss_pred CCCCcccCC
Q 006724 80 GPHDHFHNH 88 (633)
Q Consensus 80 ~~~~~~~~~ 88 (633)
.+|||||||
T Consensus 312 ~~~~~~~~~ 320 (320)
T 3v5u_A 312 RSHHHHHHH 320 (320)
T ss_dssp ---------
T ss_pred cccccccCC
Confidence 346666665
No 39
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=22.92 E-value=16 Score=38.35 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=0.0
Q ss_pred CCCCcccCCcchhhHHhhh
Q 006724 80 GPHDHFHNHQGVRCHRALR 98 (633)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ 98 (633)
+.|||||||.+-..|+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (380)
T 3c3r_A 3 HHHHHHHHHSGQNLYFQGH 21 (380)
T ss_dssp -------------------
T ss_pred ccccccccccccchhhhhh
Confidence 3455556666655555443
No 40
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=22.70 E-value=18 Score=35.60 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=6.1
Q ss_pred HHHHHHHhCCCC
Q 006724 446 AALFLKALGYPS 457 (633)
Q Consensus 446 vgl~LraLGf~~ 457 (633)
++..|+.+|+..
T Consensus 249 Ta~~l~~~G~~~ 260 (286)
T 1jr2_A 249 TARALAAQGLPV 260 (286)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHcCCCc
Confidence 444555555543
No 41
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=22.50 E-value=18 Score=35.62 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=0.0
Q ss_pred CCCCcccCCcchhhHHh
Q 006724 80 GPHDHFHNHQGVRCHRA 96 (633)
Q Consensus 80 ~~~~~~~~~~~~~~~~~ 96 (633)
|+.||||||.+-||+-.
T Consensus 2 ~~~~~~~~~~~~kCl~v 18 (282)
T 1lbd_A 2 GSSHHHHHHSSGLVPRG 18 (282)
T ss_dssp -----------------
T ss_pred CCcccccCCCCCCcCcc
Confidence 45567788889998653
No 42
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=21.27 E-value=20 Score=37.58 Aligned_cols=62 Identities=27% Similarity=0.498 Sum_probs=27.3
Q ss_pred cccccccCCChhhccccCC-----chhh-hhhhhhhhhccCCeeeecCCCcHHH----HHhhhh--hccCCcceecc
Q 006724 483 NVFSHSTLATEEELEPFKP-----YQNR-LAALDYLVALESDVFVHTYDGNMAK----AVQGHR--RFEGFRKSINP 547 (633)
Q Consensus 483 nl~TKetLas~eEL~pF~~-----~ss~-lAALDYiVcl~SDVFV~t~~GNfa~----~V~GhR--~y~G~~kTI~P 547 (633)
|-+.|.+.+. |.|-.|.+ ||+. ..-||.---..-|..| ++|-|.+ +++|.- .+.|.+-|+.|
T Consensus 374 npvnkkdfan-eklvefnkkqaeeywdkakkeidlskntsldllv--sdgefekkageflqgqlqdsleglkvtvtp 447 (564)
T 4faj_A 374 NPVNKKDFAN-EKLVEFNKKQAEEYWDKAKKEIDLSKNTSLDLLV--SDGEFEKKAGEFLQGQLQDSLEGLKVTVTP 447 (564)
T ss_dssp CTTTCCBSCC-SCCCCCCHHHHHHHHHHHHTTSCTTTCCEEEEEE--ESSHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred Cccchhhhhh-HHHHHhhHHhHHHHHHHhhhhcccccCcceeeEe--ccchhhhhhhHHhhhhhHhhhcCceEEeee
Confidence 3455656655 45555543 3331 2334433222233333 3565543 344432 34565555555
No 43
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=21.11 E-value=26 Score=26.08 Aligned_cols=7 Identities=57% Similarity=1.213 Sum_probs=4.0
Q ss_pred CCcccCC
Q 006724 82 HDHFHNH 88 (633)
Q Consensus 82 ~~~~~~~ 88 (633)
|+|||||
T Consensus 36 hhhhhhh 42 (42)
T 3kl4_B 36 HHHHHHH 42 (42)
T ss_pred cccccCC
Confidence 5555555
No 44
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=21.02 E-value=20 Score=31.21 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=0.0
Q ss_pred CCCCcccCCcchh
Q 006724 80 GPHDHFHNHQGVR 92 (633)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (633)
|+.||||||.++|
T Consensus 2 ~~~~~~~~~~~~k 14 (115)
T 2khi_A 2 GSSHHHHHHSSGL 14 (115)
T ss_dssp -------------
T ss_pred Ccccccccccchh
Confidence 4456778888888
No 45
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=20.98 E-value=20 Score=36.86 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCCCcccCCcchhhHHhhhhhhhh
Q 006724 80 GPHDHFHNHQGVRCHRALRRKLCA 103 (633)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (633)
|.|||||||++-. +.--|++..+
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~ 24 (344)
T 2bgs_A 2 GHHHHHHHHHSSG-HIDDDDKHML 24 (344)
T ss_dssp ------------------------
T ss_pred CccccccccccCC-CCCccHHHHH
Confidence 5566667776666 5555554443
No 46
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.78 E-value=21 Score=32.00 Aligned_cols=11 Identities=45% Similarity=0.912 Sum_probs=0.0
Q ss_pred CCCCcccCCcc
Q 006724 80 GPHDHFHNHQG 90 (633)
Q Consensus 80 ~~~~~~~~~~~ 90 (633)
|.|+|||.||+
T Consensus 2 ~~~~~~~~~~~ 12 (119)
T 3ol1_A 2 GHHHHHHSHMS 12 (119)
T ss_dssp -----------
T ss_pred CCcccccCCcc
Confidence 55677777775
No 47
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=20.48 E-value=21 Score=35.69 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=4.6
Q ss_pred CCcccCCcchhhHHhhhhhhhhhcc
Q 006724 82 HDHFHNHQGVRCHRALRRKLCAFLP 106 (633)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (633)
|||||||++++--=...-||++...
T Consensus 4 ~~~~~~~~~~~~~~~~~MrIl~~~~ 28 (398)
T 3oti_A 4 HHHHHHHHSSGHIEGRHMRVLFVSS 28 (398)
T ss_dssp ---------------CCCEEEEECC
T ss_pred cccccccccccchhhhcCEEEEEcC
Confidence 5556666676633332235655543
Done!