Query 006724
Match_columns 633
No_of_seqs 178 out of 394
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:16:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 28.6 3.5 0.00026 35.8 -1.3 36 252-287 31-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 21.5 39 0.0029 28.6 4.1 30 438-468 17-46 (118)
3 d1vjna_ d.157.1.4 (A:) Hypothe 15.3 74 0.0054 27.9 4.7 54 223-285 130-184 (209)
4 d1tiza_ a.39.1.5 (A:) Calmodul 15.2 29 0.0021 25.1 1.6 30 546-575 33-65 (67)
5 d2aizp1 d.79.7.1 (P:1-134) Pep 15.0 2.6E+02 0.019 22.6 8.0 70 363-467 42-111 (134)
6 d1oqya2 a.5.2.1 (A:317-360) DN 14.9 11 0.00081 27.3 -0.9 26 442-467 1-30 (44)
7 d2g7ja1 d.198.5.1 (A:1-112) Pu 13.9 35 0.0026 28.4 1.9 19 441-459 3-21 (112)
8 d1oqpa_ a.39.1.5 (A:) Caltract 13.8 44 0.0032 24.6 2.3 25 552-576 50-74 (77)
9 d2nyga1 c.140.1.2 (A:2-271) Un 13.3 79 0.0058 29.5 4.5 54 219-278 27-104 (270)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 13.1 53 0.0039 25.0 2.6 24 433-457 13-36 (75)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=28.65 E-value=3.5 Score=35.83 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=29.9
Q ss_pred eEeecccCCCCccCCC-----CCCcccccHHHHHHHccccc
Q 006724 252 TLVLPLLDHESFWTDP-----SDFKDIFDWRHFMNVLKDDV 287 (633)
Q Consensus 252 TLVlP~L~~~S~WkD~-----S~F~DIFD~dhFI~sL~~dV 287 (633)
=||||...-+++|+++ .-=+.|||-|.|--..+..|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 3999999999999984 34578999999998887655
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=21.49 E-value=39 Score=28.58 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEEeccc
Q 006724 438 GCPMSPREAALFLKALGYPSTTTIYIVAGEI 468 (633)
Q Consensus 438 ~CPLTPeEvgl~LraLGf~~~T~IYLAsGei 468 (633)
+|||+|||+...|+.|--+.+. .||..++-
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~rE 46 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICRE 46 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEccc
Confidence 6999999999999998765554 56665554
No 3
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=15.29 E-value=74 Score=27.89 Aligned_cols=54 Identities=19% Similarity=0.449 Sum_probs=34.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhcceEeecccCCCCccCC-CCCCcccccHHHHHHHccc
Q 006724 223 YIVVHANGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTD-PSDFKDIFDWRHFMNVLKD 285 (633)
Q Consensus 223 YL~V~~nGGLNQqR~~IcDAVaVARiLNATLVlP~L~~~S~WkD-~S~F~DIFD~dhFI~sL~~ 285 (633)
.+++.+.|.. -..--+|+.+|+.|++-.|||-= |+. ...| ++=..|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~H-----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPMH-----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEES-----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEec-----cCCccccc-CcCCHHHHHHHhhh
Confidence 4555544332 23467899999999999999942 433 2233 45557888887663
No 4
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.23 E-value=29 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.519 Sum_probs=20.5
Q ss_pred ccchhHHHHHHhhh---cCCCCCHHHHHHHHHH
Q 006724 546 NPDKQNIVRLIDQL---DEGAISWEEFSSEVKS 575 (633)
Q Consensus 546 ~Pdrk~la~L~~~~---~~~~i~W~~f~~~v~~ 575 (633)
.+....+-.+|..+ .+|.|+|+||...+++
T Consensus 33 ~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~ 65 (67)
T d1tiza_ 33 YFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp TSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34455566666554 3588999999988754
No 5
>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]}
Probab=14.98 E-value=2.6e+02 Score=22.58 Aligned_cols=70 Identities=14% Similarity=0.042 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHHHHhCCCCeEEEecccchhhhhhhcCCCCCCHHHHHHHHHHhhhcccccccccchHhhhhCCCCCCC
Q 006724 363 SKDIEDLGKILVDRLRNNSEPYVALHLRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRLQGGCPMS 442 (633)
Q Consensus 363 ~~~I~eLg~kLV~RMR~~~gpYIALHLR~EkDMLAfsgC~~g~~~~E~~eL~~~R~~~~~Wk~k~i~~~e~R~~G~CPLT 442 (633)
+++-+..-++|.+.|+..+. .+++ ...|+ ...++.++-.+|...|
T Consensus 42 ~~~~~~~L~~la~~l~~~~~------~~i~--I~Ght--D~~g~~~~N~~LS~~R------------------------- 86 (134)
T d2aizp1 42 TGEYVQILDAHAAYLNATPA------AKVL--VEGNT--DERGTPEYNIALGQRR------------------------- 86 (134)
T ss_dssp CHHHHHHHHHHHHHHHHSTT------CCEE--EEEEC--CSSSCHHHHHHHHHHH-------------------------
T ss_pred CHHHHHHHHHHHHHHHhCCC------cEEE--Eeecc--ccccccccchhHHHHH-------------------------
Confidence 44445556677777877542 1233 45663 4456677777777776
Q ss_pred HHHHHHHHHHhCCCCCcEEEEEecc
Q 006724 443 PREAALFLKALGYPSTTTIYIVAGE 467 (633)
Q Consensus 443 PeEvgl~LraLGf~~~T~IYLAsGe 467 (633)
.+.|..+|...|.+.+-....+-|+
T Consensus 87 A~~V~~~L~~~Gi~~~ri~~~g~G~ 111 (134)
T d2aizp1 87 ADAVKGYLAGKGVDAGKLGTVSYGE 111 (134)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECTT
T ss_pred HHHHHHHHHHcCCccccceeEEccc
Confidence 6788889999999887655555454
No 6
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.87 E-value=11 Score=27.27 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=17.5
Q ss_pred CHHHHH--HHHHHhCCCCCcE--EEEEecc
Q 006724 442 SPREAA--LFLKALGYPSTTT--IYIVAGE 467 (633)
Q Consensus 442 TPeEvg--l~LraLGf~~~T~--IYLAsGe 467 (633)
||+|.. .=|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 455543 3478999999874 5777554
No 7
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=13.93 E-value=35 Score=28.41 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 006724 441 MSPREAALFLKALGYPSTT 459 (633)
Q Consensus 441 LTPeEvgl~LraLGf~~~T 459 (633)
|-|.||+.+|+..||..+.
T Consensus 3 LRPDEVArVLe~aGF~~d~ 21 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVDV 21 (112)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6699999999999997653
No 8
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=13.83 E-value=44 Score=24.58 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=17.2
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHH
Q 006724 552 IVRLIDQLDEGAISWEEFSSEVKSL 576 (633)
Q Consensus 552 la~L~~~~~~~~i~W~~f~~~v~~~ 576 (633)
+...+|.-.+|.|+|++|.+.|++.
T Consensus 50 ~~~~~D~d~~G~I~~~EF~~~m~k~ 74 (77)
T d1oqpa_ 50 MIAEADRNDDNEIDEDEFIRIMKKT 74 (77)
T ss_dssp HHHHHCCSSSSEECHHHHHHHHHHT
T ss_pred HHHHhCCCCCCcEeHHHHHHHHHcc
Confidence 3444444446889999999888654
No 9
>d2nyga1 c.140.1.2 (A:2-271) Uncharacterized protein YokD {Bacillus subtilis [TaxId: 1423]}
Probab=13.27 E-value=79 Score=29.51 Aligned_cols=54 Identities=24% Similarity=0.462 Sum_probs=0.0
Q ss_pred CCCcEEEEEeC--------CChhhHHHHHHHHHHHHHHhcceEeecccCCCCccCCCCCCcc----------------cc
Q 006724 219 KTNGYIVVHAN--------GGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTDPSDFKD----------------IF 274 (633)
Q Consensus 219 ~snGYL~V~~n--------GGLNQqR~~IcDAVaVARiLNATLVlP~L~~~S~WkD~S~F~D----------------IF 274 (633)
+...-|+|+++ ||+..+-.++.+.|. -+.|||||.+..+ ..|+..|.+ +|
T Consensus 27 ~kgd~v~vHssl~~lg~~~~~~~~~i~aL~~~vG----~~GTLvmPtft~~--~~~~~~~~~~~~~~~~~~~~r~~~p~F 100 (270)
T d2nyga1 27 KKGMTVLVHSSLSSIGWVNGGAVAVIQALIDVVT----EEGTIVMPSQSVE--LSDPKEWGNPPVPEEWWDIIRESMPAY 100 (270)
T ss_dssp CTTCEEEEEECSGGGCCBTTHHHHHHHHHHHHHT----TTSEEEEECCCTT--SSCGGGCCSSCCCGGGTTHHHHSCCCC
T ss_pred CCcCEEEEEcChHHhCCcCCCHHHHHHHHHHHhC----CCceEEEEecccC--CCChhhhcCCCCcHHHHHHHHhcCCCc
Q ss_pred cHHH
Q 006724 275 DWRH 278 (633)
Q Consensus 275 D~dh 278 (633)
|.++
T Consensus 101 d~~~ 104 (270)
T d2nyga1 101 NSNY 104 (270)
T ss_dssp CTTT
T ss_pred Cccc
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=13.13 E-value=53 Score=25.00 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.3
Q ss_pred hhhCCCCCCCHHHHHHHHHHhCCCC
Q 006724 433 RRLQGGCPMSPREAALFLKALGYPS 457 (633)
Q Consensus 433 ~R~~G~CPLTPeEvgl~LraLGf~~ 457 (633)
.|..|.. ++++|+..+|+.|||.-
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~~ 36 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCRV 36 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCEE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCce
Confidence 3666777 99999999999999963
Done!