BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006725
(633 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP----TIDLI--LILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + LI L+L+N
Sbjct: 110 FHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN 169
Query: 275 P--ATSF 279
P AT+F
Sbjct: 170 PESATTF 176
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP----TIDLI--LILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + LI L+L+N
Sbjct: 111 FHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN 170
Query: 275 P--ATSF 279
P AT+F
Sbjct: 171 PESATTF 177
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP----TIDLI--LILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + LI L+L+N
Sbjct: 93 FHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN 152
Query: 275 P--ATSF 279
P AT+F
Sbjct: 153 PESATTF 159
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP------TIDLILILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + L+L+N
Sbjct: 110 FHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVLAN 169
Query: 275 P--ATSF 279
P AT+F
Sbjct: 170 PESATTF 176
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 22/97 (22%)
Query: 240 PEKPIYLVGDSFGGCLALAVAARNPT--IDLILI-LSNPATSFGR----SQL-------- 284
P++P+ LVG S G LA A+A+ P +LIL+ L PA + +QL
Sbjct: 93 PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLS 152
Query: 285 ----QPLFPILKAMPDELHCAVPYL---LSYVMGDPI 314
P+FP + L A+P L SY++ I
Sbjct: 153 STPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRI 189
>pdb|2ROQ|A Chain A, Solution Structure Of The Thiolation-Thioesterase
Di-Domain Of Enterobactin Synthetase Component F
Length = 343
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 238 SSPEKPIYLVGDSFGGCLALAVAAR 262
P P YL+G S GG LA +AAR
Sbjct: 168 QQPHGPYYLLGYSLGGTLAQGIAAR 192
>pdb|3TEJ|A Chain A, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
pdb|3TEJ|B Chain B, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
Length = 329
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 240 PEKPIYLVGDSFGGCLALAVAAR 262
P P YL+G S GG LA +AAR
Sbjct: 164 PHGPYYLLGYSLGGTLAQGIAAR 186
>pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
Length = 333
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 44 LFKTMASVINFPVSPSFVINSQYKTSFRARAQSVGGGDSTVLSSGSIAVNGDPVSREKEK 103
LF+ + + P IN Y+T +GGG + S+ ++ + G + + K
Sbjct: 150 LFRIVTPYFSTKNIPCIAINHTYETQEMFSKTVMGGGTGPMYSADTVFIIG----KRQIK 205
Query: 104 NGALIDVGNGTLKPRVEKKKLVKNVISEELEVLWDDGYGTDSVKDYLDAAKE---IIKPD 160
+G+ D+ VEK + VK ++V +D G D LD A E ++KP
Sbjct: 206 DGS--DLQGYQFVLNVEKSRTVKEKSKFFIDVKFDG--GIDPYSGLLDMALELGFVVKPK 261
Query: 161 GGPPRWFC 168
G W+
Sbjct: 262 NG---WYA 266
>pdb|1VDW|A Chain A, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
pdb|1VDW|B Chain B, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
Length = 254
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 386 ASGKDNMLPSEDEAKRLNNSLQNCIVRNFKDNGHTLLLEE 425
AS ++ PS DE K ++ +N I+ FKD G ++ EE
Sbjct: 30 ASETISISPSGDETKVVDKVAENIIISKFKDLGVNVVSEE 69
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
Length = 257
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 234 REHASSPEKPIYLVGDSFGGCLALAVAARNPTIDLILILSNPATSFGRSQLQPLFPILKA 293
RE ++ K ++ V ++ L L V+ P D+ ++ + FG + +Q L K
Sbjct: 23 REVVNAEAKNVH-VNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKL 81
Query: 294 MPDEL 298
+PD++
Sbjct: 82 LPDDI 86
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 94 GDPVSREKEKNGA---LIDVGNGTLKP 117
GDP +R NGA L+D+ N TLKP
Sbjct: 208 GDPYARSLSANGARTWLVDINNETLKP 234
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein
Ybl036c-Selenomet Crystal
Length = 256
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 234 REHASSPEKPIYLVGDSFGGCLALAVAARNPTIDLILILSNPATSFGRSQLQPLFPILKA 293
RE ++ K ++ V ++ L L V+ P D+ ++ + FG + +Q L K
Sbjct: 22 REVVNAEAKNVH-VNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKL 80
Query: 294 MPDEL 298
+PD++
Sbjct: 81 LPDDI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,833,310
Number of Sequences: 62578
Number of extensions: 732969
Number of successful extensions: 2099
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2090
Number of HSP's gapped (non-prelim): 13
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)