Your job contains 1 sequence.
>006726
MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT
QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRV
ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYT
TVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV
GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYS
SGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV
LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEG
EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAA
TAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLIL
EGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCID
AVVSRASKQKPVIKQVCYLFSFSLYWPIYKVTF
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006726
(633 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2050024 - symbol:AT2G21440 species:3702 "Arabi... 808 2.1e-143 2
UNIPROTKB|Q9NW13 - symbol:RBM28 "RNA-binding protein 28" ... 403 9.3e-37 1
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 261 1.1e-34 2
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 280 2.0e-34 2
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 283 6.1e-34 2
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 282 3.3e-33 2
RGD|1311336 - symbol:Rbm28 "RNA binding motif protein 28"... 281 7.1e-33 2
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 137 1.3e-27 4
WB|WBGene00011043 - symbol:rbm-28 species:6239 "Caenorhab... 205 2.2e-26 2
SGD|S000005964 - symbol:NOP4 "Nucleolar protein" species:... 167 6.2e-26 4
CGD|CAL0002736 - symbol:NOP4 species:5476 "Candida albica... 147 2.6e-25 4
UNIPROTKB|Q59KZ0 - symbol:NOP4 "Putative uncharacterized ... 147 2.6e-25 4
UNIPROTKB|D4A5K7 - symbol:Rbm28 "RNA binding motif protei... 193 4.7e-23 2
FB|FBgn0260456 - symbol:CG4806 species:7227 "Drosophila m... 223 7.6e-23 2
UNIPROTKB|G3MZL2 - symbol:RBM28 "Uncharacterized protein"... 280 1.0e-22 2
DICTYBASE|DDB_G0270156 - symbol:DDB_G0270156 "RNA-binding... 135 2.5e-22 4
POMBASE|SPBC4F6.14 - symbol:SPBC4F6.14 "RNA-binding prote... 141 2.7e-21 4
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 174 1.1e-12 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 169 4.4e-12 2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 169 4.4e-12 2
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 164 1.7e-11 2
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 164 1.7e-11 2
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 163 2.7e-11 2
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 161 3.9e-11 2
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 161 6.1e-11 2
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 155 3.0e-10 2
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 152 4.4e-10 2
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 151 5.8e-10 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 117 1.4e-09 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 110 2.6e-09 3
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 138 3.2e-09 3
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 119 3.8e-09 2
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 152 4.8e-09 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 124 5.8e-09 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 100 7.9e-09 3
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 152 1.1e-08 2
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 112 1.2e-08 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 150 1.4e-08 2
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 139 1.5e-08 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 119 1.8e-08 2
DICTYBASE|DDB_G0286007 - symbol:rbm8A "RNA-binding motif ... 138 1.9e-08 1
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 151 2.3e-08 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 152 2.4e-08 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 102 2.4e-08 3
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 137 2.4e-08 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 152 2.5e-08 2
CGD|CAL0002378 - symbol:SBP1 species:5476 "Candida albica... 135 2.6e-08 2
ZFIN|ZDB-GENE-031125-3 - symbol:rbm19 "RNA binding motif ... 150 3.0e-08 2
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 136 3.1e-08 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 101 3.1e-08 3
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 101 3.1e-08 3
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 118 3.5e-08 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 101 3.6e-08 3
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 143 3.7e-08 2
UNIPROTKB|F1PIL7 - symbol:MYEF2 "Uncharacterized protein"... 103 3.7e-08 3
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 159 4.2e-08 1
UNIPROTKB|A6QQP0 - symbol:MYEF2 "MYEF2 protein" species:9... 104 4.3e-08 3
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 159 4.3e-08 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 159 4.3e-08 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 101 4.3e-08 3
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 117 4.7e-08 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 117 4.7e-08 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 117 4.7e-08 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 117 4.7e-08 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 117 4.8e-08 2
UNIPROTKB|F1SN63 - symbol:MYEF2 "Uncharacterized protein"... 103 5.1e-08 3
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 101 5.1e-08 3
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 117 5.5e-08 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 101 5.5e-08 3
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 117 5.5e-08 2
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 117 5.9e-08 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 117 5.9e-08 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 101 6.0e-08 3
UNIPROTKB|D4AB08 - symbol:Myef2 "Protein Myef2" species:1... 103 6.4e-08 3
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 133 6.5e-08 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 133 6.5e-08 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 117 6.6e-08 2
UNIPROTKB|D4A1T2 - symbol:Myef2 "Protein Myef2" species:1... 103 6.7e-08 3
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 117 7.1e-08 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 117 7.1e-08 2
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 117 7.1e-08 2
RGD|1306547 - symbol:Myef2 "myelin expression factor 2" s... 103 7.5e-08 3
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 143 7.7e-08 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 108 7.8e-08 2
UNIPROTKB|Q9P2K5 - symbol:MYEF2 "Myelin expression factor... 103 7.9e-08 3
UNIPROTKB|F1PIK6 - symbol:MYEF2 "Uncharacterized protein"... 103 8.5e-08 3
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 125 8.6e-08 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 125 8.6e-08 2
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 155 8.7e-08 1
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 121 9.9e-08 3
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 137 1.1e-07 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 114 1.1e-07 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 102 1.2e-07 3
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 114 1.3e-07 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 114 1.3e-07 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 149 1.3e-07 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 114 1.3e-07 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 114 1.3e-07 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 114 1.3e-07 2
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif... 130 1.4e-07 1
WARNING: Descriptions of 426 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 808 (289.5 bits), Expect = 2.1e-143, Sum P(2) = 2.1e-143
Identities = 162/268 (60%), Positives = 198/268 (73%)
Query: 43 VKHAMHRASLEQ--RRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKP-- 98
V+ + R +E+ R K + ++ + +EK + K K K +E + KP
Sbjct: 152 VEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEKPIE 211
Query: 99 RKAAT-LGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPK 157
RK T L +DL DKE CS KQRVARTVI GGL NA+MAE VH IGTVCSV YPLPK
Sbjct: 212 RKRPTKLHVDLPDKETCSDKQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPK 271
Query: 158 EELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKW 217
EEL+Q+GL Q+GC+ +ASAVL+T+VKSACA+VA LHQ E+KG +WARQLGGEGSK QKW
Sbjct: 272 EELQQNGLTQDGCRAEASAVLFTSVKSACAAVAKLHQTEVKGNLIWARQLGGEGSKAQKW 331
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
KLIIRN+PF+AK ++IK +FS VG VW+V+IP N +TGL KGFAFVKFTCK+DA +AI+K
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAA 305
FNG FGKRPIAVDWAVPKNIY+ GAA
Sbjct: 392 FNGHMFGKRPIAVDWAVPKNIYN--GAA 417
Score = 615 (221.5 bits), Expect = 2.1e-143, Sum P(2) = 2.1e-143
Identities = 130/280 (46%), Positives = 167/280 (59%)
Query: 342 EDLPSNADFDEEVDIARKVLNKXXXXXXXXXXX--XXXXALVKGNKEQDSDKTVNESAKV 399
+D+ ++ +F++E D+ARKVL K + S K V +S+ V
Sbjct: 477 KDVGTDMNFEDEADVARKVLKNLLASSKGSTATPEGETEESDKSKLKSSSTKPVADSSGV 536
Query: 400 SDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVL 459
S+ +T+ D+ + T+FI NLPFD+ EEVKQRF+ FGEV S VL
Sbjct: 537 SEPLKSGKTKVVAPK--ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVL 594
Query: 460 HQVTKRPKGTGFLKFXXXXXXXXXXXXXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEID 519
H+VTKRP+GT F+KF G+G+ LKGRQL V E+
Sbjct: 595 HKVTKRPEGTAFVKFKTADASVAAISAADTASGVGVLLKGRQLNVMRAVGKKAAKDIELK 654
Query: 520 KSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTR 579
K++ + DHRNLYLAKEG IL+ TPAAEGVS +DM KR+ LHE KM LQSPNFHVSRTR
Sbjct: 655 KTEEKNVDHRNLYLAKEGQILDDTPAAEGVSAEDMDKRRRLHENKMKMLQSPNFHVSRTR 714
Query: 580 LVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQVCYL 619
LVIYNLPKSM K L +L +DAV SRA+KQKP I+Q+ +L
Sbjct: 715 LVIYNLPKSMNPKQLNRLLVDAVTSRATKQKPCIRQIKFL 754
Score = 231 (86.4 bits), Expect = 4.3e-81, Sum P(2) = 4.3e-81
Identities = 49/105 (46%), Positives = 67/105 (63%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+VT KGS+EHRGF +V+FA+ ED NRA+E+KNG++VGGR+I VK A HR SL++RR+K
Sbjct: 51 LVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSLQERRTKAA 110
Query: 61 QEVQAEDIEKTMDNKDGVI-------SGAEKHSSKLLESGKTVKP 98
+ + D + +KD I S EK K +E K KP
Sbjct: 111 EGISVPDNSQGQSDKDTSIPETDEKVSPPEKKLEKPVERKKVEKP 155
Score = 109 (43.4 bits), Expect = 3.1e-68, Sum P(2) = 3.1e-68
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 205 RQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264
R+ G E S + + +P+ ++++ FS VG V ++ N + +GFAFVK
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
F + D AI+ NG G R I V A
Sbjct: 68 FALQEDVNRAIELKNGSTVGGRRITVKQA 96
Score = 81 (33.6 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 56/212 (26%), Positives = 91/212 (42%)
Query: 74 NKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQK--QRVARTVIIGGLLN 131
+K+G +E S L E + V+ G D D ED S K + A +G +N
Sbjct: 427 DKEGSDGDSENSSVDLEEVDEAVESHPPP--GDDTDDDEDGSNKLTESDALDKDVGTDMN 484
Query: 132 ----ADMAEEVHR--LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSA 185
AD+A +V + LA S G+ + P+ E E+ D S + ++ K
Sbjct: 485 FEDEADVARKVLKNLLASSKGSTAT-----PEGETEES---------DKSKLKSSSTKPV 530
Query: 186 CASVALLHQKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV 243
S + + +K G V A + + ++ L IRN+PF E+K F+ G V
Sbjct: 531 ADSSGV--SEPLKSGKTKVVAPKETQDNDDFER-TLFIRNLPFDVTKEEVKQRFTVFGEV 587
Query: 244 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275
++ + + T +G AFVKF + +AI
Sbjct: 588 ESLSLVLHKVTKRPEGTAFVKFKTADASVAAI 619
Score = 76 (31.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 419 EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS-FVPVLHQVTKRPKGTGFLKF 474
EG + + I NLPF ++K FSA G V F+P + T PKG F+KF
Sbjct: 324 EGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFE-TGLPKGFAFVKF 379
Score = 62 (26.9 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 543 TPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYN-LPKSMTEKGLKKLCIDA 601
T AAEG+S D S+ Q K T + + VS + + + EK +++ ++
Sbjct: 107 TKAAEGISVPDNSQGQ---SDKDTSIPETDEKVSPPEKKLEKPVERKKVEKPIERKQVEK 163
Query: 602 VVSRASKQKPV-IKQV 616
V R +KP+ +KQV
Sbjct: 164 PVERKKAEKPIELKQV 179
Score = 52 (23.4 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 253 DT-GLSKGFAFVKFTCKRDAESAIQKFNG--QKFGK--RPIAVDWAV 294
DT S+G AFV+FT A A++ N + FG RP+ +++AV
Sbjct: 763 DTKNYSRGVAFVEFTEHEHALVALRVLNNNPETFGPQHRPV-IEFAV 808
Score = 44 (20.5 bits), Expect = 2.2e-61, Sum P(2) = 2.2e-61
Identities = 18/92 (19%), Positives = 39/92 (42%)
Query: 56 RSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKP--RKAATLGIDLADKED 113
R KV + ++ + +EK ++ K K K E + KP RK ++ E
Sbjct: 149 RKKVEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPVERKQVEK 208
Query: 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSI 145
+++R + + L + + + R+A ++
Sbjct: 209 PIERKRPTKLHV--DLPDKETCSDKQRVARTV 238
Score = 43 (20.2 bits), Expect = 2.8e-61, Sum P(2) = 2.8e-61
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 48 HRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKA-ATLGI 106
++ S E R + ED+ + ++ K+G G + + K +++ R+ A GI
Sbjct: 54 NKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSLQERRTKAAEGI 113
Query: 107 DLAD 110
+ D
Sbjct: 114 SVPD 117
Score = 43 (20.2 bits), Expect = 2.8e-61, Sum P(2) = 2.8e-61
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 58 KVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKP--RKAATLGIDLADKEDCS 115
K+ + V+ + +EK ++ K K + K +E + KP RK ++ E
Sbjct: 142 KLEKPVERKKVEKPIERKQVEKPVERKKAEKPIELKQVEKPFERKQVEKPVERKQVEKPV 201
Query: 116 QKQRVARTV 124
++++V + +
Sbjct: 202 ERKQVEKPI 210
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 403 (146.9 bits), Expect = 9.3e-37, P = 9.3e-37
Identities = 118/401 (29%), Positives = 172/401 (42%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
+K +LIIRN+ FK +++K +F+ G V V IP D G +GF FV+F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKA 170
Query: 275 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGV-QNKXXXXXXXXXXXXXXXXXXXXXX 333
++ N ++ R +AVDWAV K+ Y + + + + K
Sbjct: 171 LKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEE 230
Query: 334 XXXXXXXKEDLPSNADFDEEVDIARKVLNKXXXXXXXXXXXXXXXALVKGNKEQDSDKTV 393
+D + FD+E + + +K A K + + D +
Sbjct: 231 EENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDL 290
Query: 394 NESAKVSD----VXXXXXXXXXXXXXXQTEGEDELQ--------NTIFICNLPFDLDNEE 441
ES + D Q + + + T+FI NL FD + EE
Sbjct: 291 EESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEE 350
Query: 442 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXXXXXXXGLG-IFLKGR 500
+ + FGE+ VLH T+ KG F +F G + L GR
Sbjct: 351 LGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGR 410
Query: 501 QLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQML 560
QL V + K K T RNLYLA+EGLI GT AAEGVS DM+KR+
Sbjct: 411 QLKVDLAVTRDEAAKLQTTKVKKPTGT-RNLYLAREGLIRAGTKAAEGVSAADMAKRERF 469
Query: 561 HEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDA 601
K KL+ N VSRTRL ++NLPK++ +K L+KL + A
Sbjct: 470 ELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSA 510
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 261 (96.9 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 67/177 (37%), Positives = 93/177 (52%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPV-LHQVTKRPKGTGFLKFXXXXXXXXXXX 485
TIFI NL FD + E +++ FGE+ S+V V ++ T KG F +F
Sbjct: 440 TIFIRNLSFDSEEEGLEEVLLQFGEL-SYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIA 498
Query: 486 XXXXXXGL-GIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTP 544
GI L GR+L + + K K T RNLYLA+EGLI GT
Sbjct: 499 AALDEKEFSGIKLDGRRLNILMAINRDDAAKFKDKKVKTHTGS-RNLYLAREGLIRAGTK 557
Query: 545 AAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDA 601
AAEG+S+ D++KR E K +L+ N +VS+TRL ++NLPKS+ + L LC+ A
Sbjct: 558 AAEGISEADIAKRTRFEELKRARLKDINVYVSKTRLCVHNLPKSVDKNKLFNLCVSA 614
Score = 196 (74.1 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 81/301 (26%), Positives = 131/301 (43%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEK 70
RGFGYV F++ +DA RA +K +KI V A + ++R+ + D E+
Sbjct: 44 RGFGYVTFSMEDDAQRA--LKEVKLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEE 101
Query: 71 TMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADK-EDCSQKQRVARTVIIGGL 129
+ SG K++ ++ T K + +L+ K ED KQ ++ G +
Sbjct: 102 SQK------SGETKNTEEI--PSPTKKKENGWLIIRNLSFKCEDDELKQIFSK---FGTV 150
Query: 130 LNADMAEEVHRLAGSIGTVCSVTYPLPKE-ELEQHGLAQEGCKMDASAVLYTTVKSACAS 188
L + + G V + E E + + ++ + V +TT + A
Sbjct: 151 LETRIPLKPD---GKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEVDWTTSNTESAD 207
Query: 189 VALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYI 248
+ T + G K +LIIRN+ FK + +++K +FS G V I
Sbjct: 208 PEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKI 267
Query: 249 PHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIY--SSGGAAA 306
P D G +GFAFV F +A A+ NG+K R +AVDWA+ K+ Y + +AA
Sbjct: 268 PLKPD-GKKRGFAFVLFKRMPEAGKALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAA 326
Query: 307 G 307
G
Sbjct: 327 G 327
Score = 94 (38.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI--- 275
+ IRN+ F ++ ++++ G + V + N DTG+SKG AF +F K AE I
Sbjct: 441 IFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAAA 500
Query: 276 ---QKFNGQKFGKRPIAVDWAVPKN 297
++F+G K R + + A+ ++
Sbjct: 501 LDEKEFSGIKLDGRRLNILMAINRD 525
Score = 79 (32.9 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 21/91 (23%), Positives = 42/91 (46%)
Query: 5 KGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRAS-LEQRRSKVTQEV 63
K + RGF +V F M +A +A+ NG + R++ V A+ + L + + +
Sbjct: 270 KPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNI 329
Query: 64 QAEDIEKTMDNKDGVISGAEKHSSKLLESGK 94
+ E++ ++ D +K SK +S +
Sbjct: 330 KEENVTGKVEEADENKDAKKKSISKKSDSSE 360
Score = 74 (31.1 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
L +R +P A + ++FS +G + N ++ + + +GF +V F+ + DA+ A+++
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKC-RGFGYVTFSMEDDAQRALKE 63
Score = 54 (24.1 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 5 KGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEV- 63
K + +GF +VQF + +A +A N ++ R + V ++ E + T+E
Sbjct: 158 KPDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEVDWTT--SNTESADPEDTEEPH 215
Query: 64 QAEDIEKT 71
+AE+ T
Sbjct: 216 KAEETTST 223
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 280 (103.6 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 69/176 (39%), Positives = 92/176 (52%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 486
T+FI NL FD + E++ + FG++ VLH T+ KG F +F
Sbjct: 333 TVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEA 392
Query: 487 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 545
G G+ L GRQL V K K T RNLYLA+EGLI GT A
Sbjct: 393 ASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGT-RNLYLAREGLIRAGTKA 451
Query: 546 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDA 601
AEGVS DM+KR+ K KL+ N VSRTRL ++NLPK++ +K L+KL +++
Sbjct: 452 AEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLNS 507
Score = 171 (65.3 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 58/199 (29%), Positives = 95/199 (47%)
Query: 123 TVIIGGLLNADMAEEVHRLAGSIGTV--CSVTYPLPKEELEQHGLAQEGCKMDASAVL-- 178
T+ +G L + +E++ L +G V C V + G D L
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKE 64
Query: 179 YTTVKSACASVALLHQK-----EIKGGTVWA----RQLGGEGSKT--QKWKLIIRNIPFK 227
TT + +V + +K + KG T + ++L + +K +K +LIIRN+ FK
Sbjct: 65 ITTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLSFK 124
Query: 228 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287
+++K +FS G + V IP D G +GFAFV+F +A A++ N ++ R
Sbjct: 125 CSEDDLKTVFSQFGTILEVNIPRKPD-GKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRT 183
Query: 288 IAVDWAVPKNIYSSGGAAA 306
+AVDWAV K+ Y S +A+
Sbjct: 184 VAVDWAVAKDKYKSTQSAS 202
Score = 110 (43.8 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 49/166 (29%), Positives = 76/166 (45%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV---KHAMHRASLEQRRS 57
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V K + S E+ ++
Sbjct: 35 VVTEKGSKACRGFGYVTFSMVEDVQRA--LKEITTFEGCKINVTIAKKKLRNKSKEKGKT 92
Query: 58 KVTQEVQAE---DIEKTMDNKDGVISGAEKHSSKLLESG-KTVKPRKAATLGIDLADKED 113
+ ++ + E K D K +I S K E KTV + L +++ K D
Sbjct: 93 ENSESPEKELKPKKAKVADKKARLI--IRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPD 150
Query: 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEE 159
K R V LL A A + + G +V + + K++
Sbjct: 151 --GKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDK 194
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ IRN+ F ++ ++ ++ G + V I + DT SKG AF +F + A+ ++
Sbjct: 334 VFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAA 393
Query: 279 N------GQKFGKRPIAVDWAVPKN 297
+ G K R + VD AV ++
Sbjct: 394 SPEAEGGGLKLDGRQLKVDLAVTRD 418
Score = 75 (31.5 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ +K + RGF +VQF + +A +A++ N + GR + V A+ + + +S
Sbjct: 145 IPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKSTQSASIP 204
Query: 62 EVQAED 67
+ + E+
Sbjct: 205 DYEGEE 210
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 283 (104.7 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 70/176 (39%), Positives = 92/176 (52%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 486
T+FI NL FD + EE+ + FG++ VLH T+ KG F +F
Sbjct: 328 TVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEA 387
Query: 487 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 545
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 388 ASPETEGGGLKLDGRQLRVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 446
Query: 546 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDA 601
AEGVS DM+KR+ K KL+ N VS+TRL ++NLPK + +K L+KL ++A
Sbjct: 447 AEGVSAADMAKRERFELLKHQKLKDQNIFVSQTRLCLHNLPKGVDDKELRKLLLNA 502
Score = 163 (62.4 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
+K +LIIRN+ FK +++K +F G V V IP D G +GFAFV+F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPD-GKMRGFAFVQFKNLLEAGKA 170
Query: 275 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 311
++ N ++ R +AVDWAV K+ Y + +A+ K
Sbjct: 171 LKSMNMKEIKGRTVAVDWAVAKDKYKNTQSASAPGEK 207
Score = 111 (44.1 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 50/166 (30%), Positives = 75/166 (45%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV---KHAMHRASLEQRRS 57
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V K S E+ +
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKINVTIAKKKQRNKSKEKGEN 92
Query: 58 KVTQEVQAEDIEK---TMDNKDGVISGAEKHSSKLLESG-KTVKPRKAATLGIDLADKED 113
+ ++ + E K D K +I S K E KTV + A L +++ K D
Sbjct: 93 ENSEPPKKEPKPKKPKVADKKARLI--IRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPD 150
Query: 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEE 159
K R V LL A A + + G +V + + K++
Sbjct: 151 --GKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDK 194
Score = 79 (32.9 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ IRN+ F ++ E+ ++ G + V I + DT SKG AF +F + A+ ++
Sbjct: 329 VFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAA 388
Query: 279 N------GQKFGKRPIAVDWAVPKN 297
+ G K R + VD AV ++
Sbjct: 389 SPETEGGGLKLDGRQLRVDLAVTRD 413
Score = 74 (31.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 277
L + +P A+ +++++FS VG + ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 278 --FNGQK 282
F G K
Sbjct: 66 TTFEGCK 72
Score = 74 (31.1 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS-KVT 60
+ +K + RGF +VQF + +A +A++ N + GR + V A+ + + +S
Sbjct: 145 IPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDKYKNTQSASAP 204
Query: 61 QEVQAEDIEKTMDNKDG 77
E + E + + ++G
Sbjct: 205 GEKRPEPKHQELSKENG 221
Score = 47 (21.6 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 26/106 (24%), Positives = 45/106 (42%)
Query: 16 VQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNK 75
V +AV +D + + + ++ G ++ KH S E R + E + E+ + T + +
Sbjct: 186 VDWAVAKDKYKNTQ--SASAPGEKRPEPKH--QELSKENGREEEDMEEEEEEEDDTEEEE 241
Query: 76 DGVISGAEKHSSKLLESGKTVKPRKAATLGI--DLADKEDCSQKQR 119
DG E +K + K R A D +D ED K+R
Sbjct: 242 DGE-EDKESRVTKPAQIQKRAVRRAAPAESSEEDHSD-EDSGLKER 285
Score = 45 (20.9 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 27/100 (27%), Positives = 42/100 (42%)
Query: 111 KEDCSQKQRVA---RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167
KE +K +VA +II L +++ + G G V V P K + + G A
Sbjct: 100 KEPKPKKPKVADKKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPR-KPDGKMRGFA- 157
Query: 168 EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV---WA 204
V + + A ++ ++ KEIKG TV WA
Sbjct: 158 --------FVQFKNLLEAGKALKSMNMKEIKGRTVAVDWA 189
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 282 (104.3 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 69/176 (39%), Positives = 93/176 (52%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXX-XXX 485
T+FI NL FD + E + + FG++ VLH T+ KG F +F
Sbjct: 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 385
Query: 486 XXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 545
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 386 ASLEAEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 444
Query: 546 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDA 601
AEGVS DM+KR+ K KL++ N VS+TRL ++NLPK++ +K L+KL ++A
Sbjct: 445 AEGVSAADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEA 500
Score = 157 (60.3 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
+K +LIIRN+ FK +++K +F+ G V V IP D G +GFAFV+F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKA 170
Query: 275 IQKFNGQKFGKRPIAVDWAVPKNIYSSG--GAAAGVQ 309
++ N ++ R +AVDWAV K+ Y +A GV+
Sbjct: 171 LKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVK 207
Score = 116 (45.9 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
Identities = 56/195 (28%), Positives = 83/195 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV---KHAMHRASLEQRRS 57
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V K + S E R++
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKIDVTVAKKKLRNKSKETRKN 92
Query: 58 KVTQEVQAEDIEK---TMDNKDGVISGAEKHSSKLLESG-KTVKPRKAATLGIDLADKED 113
+ + + E K D K +I S K E K V L +++ K D
Sbjct: 93 ENAESPKKEPKHKKAKVADKKARLI--IRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPD 150
Query: 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELE--QHGLAQEGCK 171
K R V LL A A + + G +V + + K++ + QH A G K
Sbjct: 151 --GKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAP-GVK 207
Query: 172 MDASAVLYTTVKSAC 186
+ + K C
Sbjct: 208 KSSDRKPKESGKKNC 222
Score = 77 (32.2 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 277
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 278 --FNGQK 282
F G K
Sbjct: 66 TTFEGCK 72
Score = 69 (29.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
T+ + IRN+ F ++ + ++ G + V + + DT SKG AF +F + A+
Sbjct: 322 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 381
Query: 274 AIQKFN------GQKFGKRPIAVDWAVPKN 297
+ + G K R + VD AV ++
Sbjct: 382 CLAAASLEAEGGGLKLDGRQLKVDLAVTRD 411
Score = 57 (25.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FG--KRPI 288
H G S G+AF +F A A++ FN FG KRPI
Sbjct: 522 HGKMKGQSLGYAFAEFQKHEHALRALRHFNNNPEIFGSQKRPI 564
Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 519 DKSKNETNDHRNLYLAKEGLIL-EGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSR 577
++S E + + + L + G EGT +E ++D + + EKK KL S V+
Sbjct: 267 EESIEEDDSYEDSDLEEGGSSYDEGTVDSESSAEDQEDEDVPVSEKKKRKLPSD---VTE 323
Query: 578 TRLV-IYNLPKSMTEKGL 594
+ V I NL E+ L
Sbjct: 324 GKTVFIRNLSFDSEEEAL 341
Score = 40 (19.1 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 42 GVKHAMHRASLE--QRRSKVTQEVQAEDIEKTMDNKD 76
GVK + R E ++ +V ++V+ D E+ D+ D
Sbjct: 205 GVKKSSDRKPKESGKKNCRVEEQVEDSDDEEDDDSHD 241
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 281 (104.0 bits), Expect = 7.1e-33, Sum P(2) = 7.1e-33
Identities = 70/176 (39%), Positives = 92/176 (52%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 486
T+FI NL FD + E + + FG++ VLH T+ KG F +F
Sbjct: 326 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLAA 385
Query: 487 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 545
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 386 ASPETEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 444
Query: 546 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDA 601
AEGVS DM+KR+ K KL++ N VS+TRL ++NLPKS+ +K L+KL + A
Sbjct: 445 AEGVSAADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKSVDDKQLRKLLLQA 500
Score = 155 (59.6 bits), Expect = 7.1e-33, Sum P(2) = 7.1e-33
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
+K +LIIRN+ FK +++K +F+ G V V IP D G +GFAF++F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPD-GKMRGFAFIQFKNLLEAGKA 170
Query: 275 IQKFNGQKFGKRPIAVDWAVPKNIY 299
++ N ++ R +AVDWAV K+ Y
Sbjct: 171 LKGANMKEIKGRTVAVDWAVAKDKY 195
Score = 115 (45.5 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 52/180 (28%), Positives = 80/180 (44%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV---KHAMHRASLEQRRS 57
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V K + S E R++
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKINVTIAKKKLKNKSKETRKN 92
Query: 58 KVTQEVQAEDIEK---TMDNKDGVISGAEKHSSKLLESG-KTVKPRKAATLGIDLADKED 113
+ ++ + E K D K +I S K E K+V L +++ K D
Sbjct: 93 ENSESPKKEPKHKKAKVADKKARLI--IRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPD 150
Query: 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELE--QHGLAQEGCK 171
K R + LL A A + + G +V + + K++ + QH G K
Sbjct: 151 --GKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKK 208
Score = 77 (32.2 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 277
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 278 --FNGQK 282
F G K
Sbjct: 66 TTFEGCK 72
Score = 71 (30.1 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
T+ + IRN+ F ++ + ++ G + V I + DT SKG AF +F + A+
Sbjct: 322 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQK 381
Query: 274 AIQKFN------GQKFGKRPIAVDWAVPKN 297
+ + G K R + VD AV ++
Sbjct: 382 CLAAASPETEGGGLKLDGRQLKVDLAVTRD 411
Score = 63 (27.2 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFG--KRPI 288
H G S G+AFV+F A A++ FN + FG KRPI
Sbjct: 522 HGKMKGQSLGYAFVEFQKHEHALRALRHFNNNPETFGPQKRPI 564
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 137 (53.3 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 35/98 (35%), Positives = 55/98 (56%)
Query: 205 RQLGGEGSKTQKWKLIIRNIPFKAKVNE-IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263
+Q + + TQ KLI+RN+P+ K E + F G V V +P + L+ GF FV
Sbjct: 138 KQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKK-GSQLA-GFGFV 195
Query: 264 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
K++AE A++ NG++ R +AVDWAV K ++ +
Sbjct: 196 VLRGKKNAEKALEAVNGKEVDGRTLAVDWAVEKEVWEN 233
Score = 128 (50.1 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 518 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 576
+ K D R LYL EG I + + +S ++ R+ +++ ++ +P+ H S
Sbjct: 432 VSKRLVRDTDKRRLYLLNEGTISPNSTLYKSLSPSEIKMREDSFKQRQNFIRKNPSLHFS 491
Query: 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQ 615
TRL I N+P+ +T K LK+L +A+V A K I+Q
Sbjct: 492 LTRLSIRNIPRHVTSKDLKQLAREAIVGFAKDVKEGIRQ 530
Score = 120 (47.3 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 34/97 (35%), Positives = 48/97 (49%)
Query: 380 LVKGNKEQD-SDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQ-NTIFICNLPFDL 437
L G ++D S+ E +VSD + E EDE +TIFI NLPF
Sbjct: 261 LDNGELDEDMSEDDDEEDDEVSDEEDEDEDEEEEEEEEEEEKEDERNASTIFIRNLPFTC 320
Query: 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
D+E + F+ FG + V+ T+RP+GTGF+ F
Sbjct: 321 DDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCF 357
Score = 117 (46.2 bits), Expect = 8.3e-20, Sum P(3) = 8.3e-20
Identities = 25/88 (28%), Positives = 49/88 (55%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
+G+ + +L IR++P A + + FS ++ + + + T SKG+ FV F
Sbjct: 30 DGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVE 89
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPKN 297
DA++A+++ NG F + I V++A P++
Sbjct: 90 DAKAALEELNGSTFEGKKIKVEYAQPRH 117
Score = 96 (38.9 bits), Expect = 1.3e-27, Sum P(4) = 1.3e-27
Identities = 23/77 (29%), Positives = 44/77 (57%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAM--HRASLEQRRSK 58
+V + + +G+G+V FA +EDA A+E NG++ G+KI V++A HR +++ K
Sbjct: 68 VVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRV-VDETVGK 126
Query: 59 VTQEVQAEDIEKTMDNK 75
+A + +K + +
Sbjct: 127 SVPSAEALERKKQREQQ 143
Score = 86 (35.3 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQ-RRSKVTQE 62
KKGS + GFG+V ++A +A+E NG V GR + V A+ + E ++ + E
Sbjct: 184 KKGS-QLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVEKEVWENLQKEEEHAE 242
Query: 63 VQAEDIEKTMDNKDG 77
++ +D +DG
Sbjct: 243 PDVKEESSDVDMEDG 257
Score = 82 (33.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 394 NESAKVSDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453
N K ++ Q +G + + +FI +LP NE + + FS +
Sbjct: 5 NSPEKPTEASGAITESSSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIK 64
Query: 454 SFVPVLHQVTKRPKGTGFLKF 474
V V+ TK+ KG GF+ F
Sbjct: 65 HAVVVVDPKTKQSKGYGFVTF 85
Score = 61 (26.5 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+ IRN+PF + D F+ G + I + +T +G FV F A++ +Q
Sbjct: 311 IFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCFWKPEHAQACVQ 368
>WB|WBGene00011043 [details] [associations]
symbol:rbm-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040026
"positive regulation of vulval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0040026 EMBL:Z83119 HSSP:P52298
eggNOG:NOG323727 GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL
PIR:T23934 RefSeq:NP_497077.2 ProteinModelPortal:O62325 SMR:O62325
STRING:O62325 PaxDb:O62325 EnsemblMetazoa:R05H10.2.1
EnsemblMetazoa:R05H10.2.2 GeneID:175145 KEGG:cel:CELE_R05H10.2
UCSC:R05H10.2 CTD:175145 WormBase:R05H10.2 HOGENOM:HOG000021963
InParanoid:O62325 NextBio:886958 Uniprot:O62325
Length = 608
Score = 205 (77.2 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 51/170 (30%), Positives = 81/170 (47%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXXX 487
+F+ NL +D E +K+ S FG++ + ++ + KGT F+ F
Sbjct: 265 VFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEGV 324
Query: 488 XXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPAAE 547
G+ + R + E +K D RNL LA+ GLI +GT AA
Sbjct: 325 ED----GVIIDNRLVKANLAIPRKEAADMEKEKLTKVPKDKRNLRLARFGLIRDGTAAAA 380
Query: 548 GVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKL 597
G+S DD +KR+ + E KL++ N +S RL I+NLP+ + + LK+L
Sbjct: 381 GMSKDDAAKRERIAEAMRKKLENTNMFISPVRLCIHNLPQKINDVKLKEL 430
Score = 172 (65.6 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-DTGLSKGFAFVKFTCK 268
E +K ++W+LIIRN+PFK K +++++ S +G + +P + D GF F++F K
Sbjct: 88 EQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEK 147
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
DAE + FN K R +A DWA+ K+ Y +
Sbjct: 148 ADAEKGREFFNTNKVLGRSVAADWALDKDTYET 180
Score = 77 (32.2 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 40/179 (22%), Positives = 77/179 (43%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE----QRRSK 58
++K GFG++QF DA + E N V GR + A+ + + E + +
Sbjct: 129 SRKDPKTCAGFGFIQFVEKADAEKGREFFNTNKVLGRSVAADWALDKDTYETNAHEEKQH 188
Query: 59 VTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQ 118
+ + V+ E EK + + S+ E G + +A+ D D E+ ++K
Sbjct: 189 LKKVVKVEKDEKPEEKSKKFDEEEGEEESEGSEDGS--EAFEASEASEDDEDDEEPAKKP 246
Query: 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAV 177
+ + L D E + G + + +++Y KEEL + L++ G K+D + +
Sbjct: 247 KNPKAQ-----LKTD--ESITE--GKVVFLRNLSYDT-KEELIKEELSKFG-KIDLAII 294
Score = 37 (18.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 97 KPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLP 156
+ R AT G A ++ Q + +II L E++ L +IG + P
Sbjct: 70 RARPEATEGEKSAIRKRFEQAKLKEWRLIIRNLPFKTKKEDLQNLCSNIGKFVEIVLPPS 129
Query: 157 KEE 159
+++
Sbjct: 130 RKD 132
>SGD|S000005964 [details] [associations]
symbol:NOP4 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000005964 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0006364 EMBL:U44030 EMBL:U02598 EMBL:X76245 PIR:S46365
RefSeq:NP_015282.1 ProteinModelPortal:P37838 SMR:P37838
DIP:DIP-3891N IntAct:P37838 MINT:MINT-559282 STRING:P37838
PaxDb:P37838 PeptideAtlas:P37838 EnsemblFungi:YPL043W GeneID:856063
KEGG:sce:YPL043W CYGD:YPL043w eggNOG:NOG323727
GeneTree:ENSGT00550000074976 HOGENOM:HOG000187841 KO:K14573
OMA:SSHRWAL OrthoDB:EOG4K6KCP NextBio:981044 Genevestigator:P37838
GermOnline:YPL043W Uniprot:P37838
Length = 685
Score = 167 (63.8 bits), Expect = 6.2e-26, Sum P(4) = 6.2e-26
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 518 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 576
+ K+ E D RNLYL EG ++EG+ A+ +++ DM R+ ++ ++ +L+ +P+ H+S
Sbjct: 402 LGKAPGE-KDRRNLYLLNEGRVVEGSKMADLLTNTDMEIREKSYKLRVEQLKKNPSLHLS 460
Query: 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK 610
TRL I NLP++M +K LK L AVV A++ K
Sbjct: 461 MTRLAIRNLPRAMNDKALKALARKAVVEFATEVK 494
Score = 112 (44.5 bits), Expect = 6.2e-26, Sum P(4) = 6.2e-26
Identities = 34/91 (37%), Positives = 46/91 (50%)
Query: 209 GEGSKTQ-KWKLIIRNIPFKAKVN-EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266
GE S + K KLIIRN+P+ + ++K +F G V IP D L GFAFV
Sbjct: 138 GEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLC-GFAFVTMK 196
Query: 267 CKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
+ A++ K R +AVD+AV KN
Sbjct: 197 KISNCRIALENTKDLKIDGRKVAVDFAVQKN 227
Score = 95 (38.5 bits), Expect = 6.2e-26, Sum P(4) = 6.2e-26
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 383 GNK--EQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNE 440
GN+ E++ D +E+ + Q + ED ++F+ N+P+D E
Sbjct: 248 GNEDAEENHDDEEDENEEEDRQVDQASKNKESKRKAQNKREDF---SVFVRNVPYDATEE 304
Query: 441 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+ FS FG V +PV+ + T KGT F+ F
Sbjct: 305 SLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338
Score = 86 (35.3 bits), Expect = 6.2e-26, Sum P(4) = 6.2e-26
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + RGFG+V FAV +D A+ T G + V A R ++ S+V
Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRR-DRSKKTSEVV 114
Query: 61 QEVQAEDIEKT--MDNKD 76
++ E EK +N+D
Sbjct: 115 EKSTPESSEKITGQNNED 132
Score = 86 (35.3 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +R+IP ++ D FS + + + +T+ S+GF FV F + D + A+ K
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKR-SRGFGFVSFAVEDDTKEALAKA 86
Query: 279 NGQKFGKRPIAVDWA 293
KF + VD A
Sbjct: 87 RKTKFNGHILRVDIA 101
Score = 85 (35.0 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
+K + + + +RN+P+ A + FS G V + TGL+KG AFV F +
Sbjct: 285 NKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTY 344
Query: 272 ESAIQKFNGQKFGKRPIAV-DWAVPKNIY 299
I+ N G + + D +P+ +Y
Sbjct: 345 NECIK--NAPAAGSTSLLIGDDVMPEYVY 371
Score = 78 (32.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 419 EGEDELQ-NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+ +D L T+F+ ++P D+ +E++ FS F + V V+ KR +G GF+ F
Sbjct: 18 QNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAV-VVKDTNKRSRGFGFVSF 73
Score = 76 (31.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 49/196 (25%), Positives = 79/196 (40%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ +K + GF +V + + A+E + GRK+ V A+ + E + K
Sbjct: 179 IPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQKNRWEDYK-KAQP 237
Query: 62 EVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVA 121
E+ +D DN+ G E H + E + R+ + K +Q +R
Sbjct: 238 EMNDKD-----DNESGNEDAEENHDDE--EDENEEEDRQVDQASKNKESKRK-AQNKRED 289
Query: 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYT- 180
+V + + D EE LA SV Y LP + + GLA+ G A YT
Sbjct: 290 FSVFVRNV-PYDATEE--SLAPHFSKFGSVKYALPVID-KSTGLAK-GTAFVAFKDQYTY 344
Query: 181 --TVKSACA--SVALL 192
+K+A A S +LL
Sbjct: 345 NECIKNAPAAGSTSLL 360
>CGD|CAL0002736 [details] [associations]
symbol:NOP4 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002736 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0035690 EMBL:AACQ01000272
EMBL:AACQ01000273 eggNOG:COG0724 KO:K14573 RefSeq:XP_710406.1
RefSeq:XP_710417.1 ProteinModelPortal:Q59KZ0 STRING:Q59KZ0
GeneID:3647980 GeneID:3647991 KEGG:cal:CaO19.12665
KEGG:cal:CaO19.5198 Uniprot:Q59KZ0
Length = 741
Score = 147 (56.8 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 518 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 576
+ K+ E D RNL+L EG I E + A+ +S D+ R+ ++ + +L+ +P H+S
Sbjct: 421 LGKAPGE-KDKRNLFLLNEGRITENSKLAQYISKTDLELREKSYKLRTQQLKKNPTLHLS 479
Query: 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK 610
TRL I NLP++M K LK L AVV A++ K
Sbjct: 480 LTRLAIRNLPRAMNAKALKALGRKAVVQFATEVK 513
Score = 139 (54.0 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 210 EGSKTQKWKLIIRNIPFKAKV-NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
E + ++ +LIIRN+P+ K +E+K +FS G V++ YIP G GFAFV
Sbjct: 128 EPIEKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKG-GQMCGFAFVIMKKN 186
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
AE A++ G K R +AVD+AV K+
Sbjct: 187 SAAEKAVEGCQGLKIDGREVAVDFAVEKS 215
Score = 107 (42.7 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+IF+ N+P+D D E +K+ FS FG V +PV+ + T KG+ F+ F
Sbjct: 310 SIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAF 357
Score = 99 (39.9 bits), Expect = 5.0e-16, Sum P(3) = 5.0e-16
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
+ ++ + + + +RNIP+ A +K+ FS G V + +TGL+KG AFV F K
Sbjct: 302 KSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAFA-KE 360
Query: 270 DA 271
DA
Sbjct: 361 DA 362
Score = 96 (38.9 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +R+IPF+A E+ + FS V + I + + S+GF FV FT D +A+ +
Sbjct: 35 LFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERK-SRGFGFVSFTLDDDCLTALVES 93
Query: 279 NGQKFGKRPIAVDWA 293
KF R + VD A
Sbjct: 94 RKTKFKDRLLRVDVA 108
Score = 81 (33.6 bits), Expect = 7.6e-17, Sum P(3) = 7.6e-17
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ KK + GF +V A +AVE G + GR++ V A+ ++ EQ + + +
Sbjct: 167 IPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVE 226
Query: 62 EVQAEDIEKTMDNKD 76
E ED E + + ++
Sbjct: 227 E--EEDNESSEEEEE 239
Score = 76 (31.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 417 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
Q +G D + T+F+ ++PF+ +EE+ + FS F V V V ++ +G GF+ F
Sbjct: 26 QDDGLD--RKTLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDN-ERKSRGFGFVSF 80
Score = 65 (27.9 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ + RGFG+V F + +D A+ T R + V A R Q ++
Sbjct: 63 VIVTDNERKSRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRRDRKPQEGNERQ 122
Query: 61 QEVQAEDIEK 70
++ E IEK
Sbjct: 123 EKSHVEPIEK 132
Score = 42 (19.8 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 436 DLDNEEVKQRFSAFGEVVSFVPVLHQV-----TKRPKGTGFLKF 474
D + E K + S VV V+ +V T R +G GF++F
Sbjct: 539 DAEEEIAKSKNSKHKGVVKQAKVIMEVKGSGETGRSRGYGFIEF 582
Score = 37 (18.1 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 50 ASLEQRRSKVTQEVQAEDIEKTMDNK 75
A +E R++K + D+ K D K
Sbjct: 89 ALVESRKTKFKDRLLRVDVAKRRDRK 114
>UNIPROTKB|Q59KZ0 [details] [associations]
symbol:NOP4 "Putative uncharacterized protein NOP4"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0002736 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000272 EMBL:AACQ01000273 eggNOG:COG0724
KO:K14573 RefSeq:XP_710406.1 RefSeq:XP_710417.1
ProteinModelPortal:Q59KZ0 STRING:Q59KZ0 GeneID:3647980
GeneID:3647991 KEGG:cal:CaO19.12665 KEGG:cal:CaO19.5198
Uniprot:Q59KZ0
Length = 741
Score = 147 (56.8 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 518 IDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQ-SPNFHVS 576
+ K+ E D RNL+L EG I E + A+ +S D+ R+ ++ + +L+ +P H+S
Sbjct: 421 LGKAPGE-KDKRNLFLLNEGRITENSKLAQYISKTDLELREKSYKLRTQQLKKNPTLHLS 479
Query: 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK 610
TRL I NLP++M K LK L AVV A++ K
Sbjct: 480 LTRLAIRNLPRAMNAKALKALGRKAVVQFATEVK 513
Score = 139 (54.0 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 210 EGSKTQKWKLIIRNIPFKAKV-NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
E + ++ +LIIRN+P+ K +E+K +FS G V++ YIP G GFAFV
Sbjct: 128 EPIEKRRARLIIRNLPWSCKKPDELKKIFSKYGAVFDAYIPKKKG-GQMCGFAFVIMKKN 186
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
AE A++ G K R +AVD+AV K+
Sbjct: 187 SAAEKAVEGCQGLKIDGREVAVDFAVEKS 215
Score = 107 (42.7 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+IF+ N+P+D D E +K+ FS FG V +PV+ + T KG+ F+ F
Sbjct: 310 SIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAF 357
Score = 99 (39.9 bits), Expect = 5.0e-16, Sum P(3) = 5.0e-16
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
+ ++ + + + +RNIP+ A +K+ FS G V + +TGL+KG AFV F K
Sbjct: 302 KSNRQEPFSIFVRNIPYDADTESLKEHFSTFGTVKYALPVVDKETGLAKGSAFVAFA-KE 360
Query: 270 DA 271
DA
Sbjct: 361 DA 362
Score = 96 (38.9 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +R+IPF+A E+ + FS V + I + + S+GF FV FT D +A+ +
Sbjct: 35 LFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDNERK-SRGFGFVSFTLDDDCLTALVES 93
Query: 279 NGQKFGKRPIAVDWA 293
KF R + VD A
Sbjct: 94 RKTKFKDRLLRVDVA 108
Score = 81 (33.6 bits), Expect = 7.6e-17, Sum P(3) = 7.6e-17
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ KK + GF +V A +AVE G + GR++ V A+ ++ EQ + + +
Sbjct: 167 IPKKKGGQMCGFAFVIMKKNSAAEKAVEGCQGLKIDGREVAVDFAVEKSKWEQMKDEEVE 226
Query: 62 EVQAEDIEKTMDNKD 76
E ED E + + ++
Sbjct: 227 E--EEDNESSEEEEE 239
Score = 76 (31.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 417 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
Q +G D + T+F+ ++PF+ +EE+ + FS F V V V ++ +G GF+ F
Sbjct: 26 QDDGLD--RKTLFVRSIPFEATSEELSEFFSQFVPVKHAVIVTDN-ERKSRGFGFVSF 80
Score = 65 (27.9 bits), Expect = 2.6e-25, Sum P(4) = 2.6e-25
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ + RGFG+V F + +D A+ T R + V A R Q ++
Sbjct: 63 VIVTDNERKSRGFGFVSFTLDDDCLTALVESRKTKFKDRLLRVDVAKRRDRKPQEGNERQ 122
Query: 61 QEVQAEDIEK 70
++ E IEK
Sbjct: 123 EKSHVEPIEK 132
Score = 42 (19.8 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 436 DLDNEEVKQRFSAFGEVVSFVPVLHQV-----TKRPKGTGFLKF 474
D + E K + S VV V+ +V T R +G GF++F
Sbjct: 539 DAEEEIAKSKNSKHKGVVKQAKVIMEVKGSGETGRSRGYGFIEF 582
Score = 37 (18.1 bits), Expect = 1.8e-22, Sum P(4) = 1.8e-22
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 50 ASLEQRRSKVTQEVQAEDIEKTMDNK 75
A +E R++K + D+ K D K
Sbjct: 89 ALVESRKTKFKDRLLRVDVAKRRDRK 114
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 193 (73.0 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 51/133 (38%), Positives = 64/133 (48%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 486
T+FI NL FD + E + + FG++ VLH T+ KG F +F
Sbjct: 330 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLAA 389
Query: 487 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 545
G G+ L GRQL V + K K T RNLYLA+EGLI GT A
Sbjct: 390 ASPETEGGGLKLDGRQLKVDLAVTRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKA 448
Query: 546 AEGVSDDDMSKRQ 558
AEGVS DM+KR+
Sbjct: 449 AEGVSAADMAKRE 461
Score = 155 (59.6 bits), Expect = 4.7e-23, Sum P(2) = 4.7e-23
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
+K +LIIRN+ FK +++K +F+ G V V IP D G +GFAF++F +A A
Sbjct: 112 KKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPD-GKMRGFAFIQFKNLLEAGKA 170
Query: 275 IQKFNGQKFGKRPIAVDWAVPKNIY 299
++ N ++ R +AVDWAV K+ Y
Sbjct: 171 LKGANMKEIKGRTVAVDWAVAKDKY 195
Score = 115 (45.5 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 52/180 (28%), Positives = 80/180 (44%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV---KHAMHRASLEQRRS 57
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V K + S E R++
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKINVTIAKKKLKNKSKETRKN 92
Query: 58 KVTQEVQAEDIEK---TMDNKDGVISGAEKHSSKLLESG-KTVKPRKAATLGIDLADKED 113
+ ++ + E K D K +I S K E K+V L +++ K D
Sbjct: 93 ENSESPKKEPKHKKAKVADKKARLI--IRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPD 150
Query: 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELE--QHGLAQEGCK 171
K R + LL A A + + G +V + + K++ + QH G K
Sbjct: 151 --GKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKK 208
Score = 77 (32.2 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK- 277
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 278 --FNGQK 282
F G K
Sbjct: 66 TTFEGCK 72
Score = 71 (30.1 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 24/90 (26%), Positives = 42/90 (46%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
T+ + IRN+ F ++ + ++ G + V I + DT SKG AF +F + A+
Sbjct: 326 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQK 385
Query: 274 AIQKFN------GQKFGKRPIAVDWAVPKN 297
+ + G K R + VD AV ++
Sbjct: 386 CLAAASPETEGGGLKLDGRQLKVDLAVTRD 415
Score = 63 (27.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFG--KRPI 288
H G S G+AFV+F A A++ FN + FG KRPI
Sbjct: 473 HGKMKGQSLGYAFVEFQKHEHALRALRHFNNNPETFGPQKRPI 515
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 223 (83.6 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 59/175 (33%), Positives = 91/175 (52%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-VTKRPKGTGFLKFXXXXXXXXXXX 485
T+FI N+PFD ++ ++++ FG +VS+ + Q V+ KGT F+KF
Sbjct: 231 TVFIKNVPFDAEDADLRKACRKFG-LVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQ 289
Query: 486 XXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSK-NETNDHRNLYLAKEGLILEGTP 544
G L L + ++K ++ D RNLYLA+EGLI+ G
Sbjct: 290 A-----GTEFKLMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAK 344
Query: 545 AAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCI 599
AA+GVS DM+KR L + K L++ N VSR RL I+NLP++ + LK++ +
Sbjct: 345 AADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLKQMAL 399
Score = 120 (47.3 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E + ++ +LI+RNI +K+ + +++ F G + +V+I D G G AFV++
Sbjct: 41 ERRQKKRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGD-GKLVGCAFVQYETIN 99
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
A AI NG++ R + VDWA+ K+ Y S
Sbjct: 100 QATKAILNSNGKELLGRKVFVDWALGKDEYVS 131
Score = 91 (37.1 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+ I+N+PF A+ +++ GLV I +G SKG AFVKF K A+ +Q
Sbjct: 232 VFIKNVPFDAEDADLRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQ 289
Score = 71 (30.1 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ K+G + G +VQ+ + A +A+ NG + GRK+ V A+ + + K +
Sbjct: 79 ILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEE 138
Query: 62 -EVQAEDIEKTMDNKD 76
+ + +E +N D
Sbjct: 139 PDEKKPKVEVKEENGD 154
Score = 63 (27.2 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 425 QNTIFICNLPFDLDNEEVKQR---FSAFGEVVSFVPVLHQVT-KRP----KGTGFLKF 474
+N + I NLP + DNE++KQ ++ F V H+VT + P KG GFL F
Sbjct: 377 RNRLSIHNLPQNYDNEKLKQMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSF 434
>UNIPROTKB|G3MZL2 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 EMBL:DAAA02011496
RefSeq:NP_001178319.1 UniGene:Bt.32577 Ensembl:ENSBTAT00000065989
GeneID:507132 KEGG:bta:507132 NextBio:20867915 Uniprot:G3MZL2
Length = 610
Score = 280 (103.6 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 69/176 (39%), Positives = 92/176 (52%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXX 486
T+FI NL FD + E++ + FG++ VLH T+ KG F +F
Sbjct: 187 TVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEA 246
Query: 487 XX-XXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPA 545
G G+ L GRQL V K K T RNLYLA+EGLI GT A
Sbjct: 247 ASPEAEGGGLKLDGRQLKVDLAVTRDEAAKLRTKKVKKPTGT-RNLYLAREGLIRAGTKA 305
Query: 546 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDA 601
AEGVS DM+KR+ K KL+ N VSRTRL ++NLPK++ +K L+KL +++
Sbjct: 306 AEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLNS 361
Score = 55 (24.4 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 286 RPIAVDWAVPKNIYSSGGAAA 306
R +AVDWAV K+ Y S +A+
Sbjct: 41 RTVAVDWAVAKDKYKSTQSAS 61
Score = 47 (21.6 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + +P A+ +++++FS VG V ++ ++ +A K K ++I
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGRTVAVDWAVAKDKYKSTQSASIP-- 63
Query: 279 NGQKFGKRP 287
G++ KRP
Sbjct: 64 -GEE--KRP 69
>DICTYBASE|DDB_G0270156 [details] [associations]
symbol:DDB_G0270156 "RNA-binding protein 28"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0270156
EMBL:AAFI02000005 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT RefSeq:XP_646584.1
ProteinModelPortal:Q55C97 EnsemblProtists:DDB0190846 GeneID:8617554
KEGG:ddi:DDB_G0270156 InParanoid:Q55C97 ProtClustDB:CLSZ2846931
Uniprot:Q55C97
Length = 900
Score = 135 (52.6 bits), Expect = 2.5e-22, Sum P(4) = 2.5e-22
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+LIIRN+ F + + + FS G + V +P T +GFAF+ F + +E +++
Sbjct: 212 ELIIRNLSFNTNIQFLVEKFSSYGQLILVKVPTKPGTNTPRGFAFLTFKERESSEKVLKE 271
Query: 278 FNGQKFGKRPIAVDWAVPKNIY 299
N +K R I +DW++ +N Y
Sbjct: 272 CNNEKIHTRQIVIDWSLKQNDY 293
Score = 128 (50.1 bits), Expect = 2.5e-22, Sum P(4) = 2.5e-22
Identities = 36/124 (29%), Positives = 60/124 (48%)
Query: 494 GIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDD 553
G+ L GR L V + + K E D +N +L G I++ + + + + D
Sbjct: 503 GVMLDGRCLVVCYAVDHQQATAYK--EKKVENVDKKNKHLLNIGKIIQNSAEGKELDEKD 560
Query: 554 MSKRQMLHEKKMTKLQ-SPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV 612
+ R ++ TKL+ +PN++VS TRL I NLP +T+ LK + + + K K V
Sbjct: 561 WALRNQADKENQTKLKVNPNYYVSPTRLCIRNLPLHVTDTILKNATMKILKTANIKDKVV 620
Query: 613 IKQV 616
+V
Sbjct: 621 FAKV 624
Score = 100 (40.3 bits), Expect = 2.5e-22, Sum P(4) = 2.5e-22
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
DEL+ T+FI NL FD E++ +F +G++V VL ++T++P G F+K+
Sbjct: 400 DELK-TLFIRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKLTQKPTGKAFVKY 451
Score = 83 (34.3 bits), Expect = 6.9e-14, Sum P(4) = 6.9e-14
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQE 62
TK G+N RGF ++ F E + + ++ N + R+I + ++ + +Q + Q+
Sbjct: 244 TKPGTNTPRGFAFLTFKERESSEKVLKECNNEKIHTRQIVIDWSLKQNDYQQLQFDKQQQ 303
Query: 63 VQAEDIEKTMDNKD 76
Q +D ++ DN D
Sbjct: 304 -QKQDSKENKDNDD 316
Score = 71 (30.1 bits), Expect = 2.5e-22, Sum P(4) = 2.5e-22
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 1 MVTK---KGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS 57
+VTK KG G YV +A+ E A +A++ KN + + I V A + L ++ S
Sbjct: 35 IVTKQNEKGEKVCSGIAYVWYALAEHAEKAIKEKNNKQLKSKIIHVSIAKEK--LSKKDS 92
Query: 58 KVTQEVQAEDIEKTMDNKD 76
K ++D + + D+KD
Sbjct: 93 K-----DSKDSKDSKDSKD 106
Score = 68 (29.0 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 422 DELQ-NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
D L+ N + I NL F+ + + + ++FS++G+++ T P+G FL F
Sbjct: 206 DNLKANELIIRNLSFNTNIQFLVEKFSSYGQLILVKVPTKPGTNTPRGFAFLTF 259
Score = 55 (24.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
L IRN+ F K ++ F G + + + T G AFVK+ + DA A++
Sbjct: 405 LFIRNLAFDTKEEDLGAKFEEYGKLVFCRLVLDKLTQKPTGKAFVKYHEQDDARRAVE 462
Score = 54 (24.1 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 232 EIKDMFSPVGLVWNVYI-PHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288
++++ FS +G + +I + G + G A+V + AE AI++ N ++ + I
Sbjct: 19 DLENFFSDIGPLKRCFIVTKQNEKGEKVCSGIAYVWYALAEHAEKAIKEKNNKQLKSKII 78
Query: 289 AVDWAVPK 296
V A K
Sbjct: 79 HVSIAKEK 86
Score = 46 (21.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGT 34
+V K + + G +V++ +DA RAVE + T
Sbjct: 434 LVLDKLTQKPTGKAFVKYHEQDDARRAVEACSST 467
Score = 40 (19.1 bits), Expect = 6.9e-14, Sum P(4) = 6.9e-14
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 209 GEGSKTQ-----KWKLIIRNIPFKAKVNEIKDMF 237
GEG K + K K+ I + K +V+E+K +F
Sbjct: 373 GEGDKKESKLDVKKKMAIDHTRNKKEVDELKTLF 406
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 141 (54.7 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 218 KLIIRNIPFKAKVNE-IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+LIIRN+P+ K + ++ FS G V + IP G GFAFV ++ AE A+
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMN 166
Query: 277 KFNGQKFGKRPIAVDWAVPKNIYSS 301
NG + RPIAVDWAV K+ + +
Sbjct: 167 SLNGTEIDGRPIAVDWAVSKDAFEA 191
Score = 131 (51.2 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +RN+ F+ K +++ + FS VG + + + N +TG ++G+ FV F+ DA+ A ++
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 279 NGQKFGKRPIAVDWAVPK 296
+K R + +D+A P+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 97 (39.2 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAV-EMKNGTSVGGRKIGVKHAMHRASLEQRRSKV 59
+VT + E+RG+G+V F+++EDA RA E+KN + GR + + A R +RS+V
Sbjct: 36 VVTNPETGENRGYGFVTFSMLEDAQRAAKELKN-KKLHGRILRLDFATPR-----KRSEV 89
Query: 60 TQEVQAEDIEKTM--DNKDGVI 79
+ Q + ++KT+ DN+ +I
Sbjct: 90 DTD-QNKAVKKTIRQDNRPRLI 110
Score = 90 (36.7 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 527 DHRNLYLAKEGLILEGTPAAEGVSDDDMSKR-QMLHEKKMTKLQSPNFHVSRTRLVIYNL 585
D R+L+L EG I P +S+ D + R Q + ++K ++P H+S RL I N+
Sbjct: 410 DRRHLFLLNEGKIAADHPLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRNI 469
Query: 586 PKSMTEKGLKKLCIDAV 602
+ + K L L A+
Sbjct: 470 SRHIDPKILAMLGRQAI 486
Score = 89 (36.4 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 381 VKGNKE--QDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDE-LQNTIFICNLPFDL 437
V G+ E + + ++ E + V DV ++E L++T+F+ NL F+
Sbjct: 229 VDGHSEGKELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFEC 288
Query: 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+E+ F FG + V T R G GF+KF
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Score = 71 (30.1 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ KG GF +V + A A+ NGT + GR I V A+ + + E K
Sbjct: 139 IPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLK--- 195
Query: 62 EVQAEDIEKTMDNKDG 77
+ +E+ K + +G
Sbjct: 196 DASSEEENKEFVSDEG 211
Score = 59 (25.8 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+ +RN+ F+ E+ + F G + + + T S G F+KF ++D ++ ++
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 43 (20.2 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 547 EGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLK 595
EG+ D +S R +LH + + K+ S V+R N KS+ E+ K
Sbjct: 361 EGIDTDSVSSRFLLHGR-LLKVTSA---VTRKEASDIN-QKSLQERKQK 404
Score = 38 (18.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 576 SRTRLVIYNLPKSM 589
+R RL+I NLP S+
Sbjct: 105 NRPRLIIRNLPWSI 118
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 174 (66.3 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 56/189 (29%), Positives = 86/189 (45%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M EE+ L SIG + S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFSP G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 114 (45.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 298 ASMAIASLNGYRLGDKILQVSFKTNKS 324
Score = 73 (30.8 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 107 -NLYISGLPRTMTQKD 121
Score = 62 (26.9 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 169 (64.5 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 56/189 (29%), Positives = 86/189 (45%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M EE+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A +++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 113 (44.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 298 AAMAIASLNGYRLGDKILQVSFKTNKS 324
Score = 73 (30.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 107 -NLYISGLPRTMTQKD 121
Score = 62 (26.9 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 169 (64.5 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 56/189 (29%), Positives = 86/189 (45%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M EE+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A +++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 113 (44.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 298 AAMAIASLNGYRLGDKILQVSFKTNKS 324
Score = 73 (30.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 107 -NLYISGLPRTMTQKD 121
Score = 62 (26.9 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 164 (62.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 113 (44.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 298 AAMAIASLNGYRLGDKILQVSFKTNKS 324
Score = 69 (29.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46
++ K + G+G+V + +DA RA+ NG + + I V +A
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 62 (26.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 164 (62.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 113 (44.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 298 AAMAIASLNGYRLGDKILQVSFKTNKS 324
Score = 69 (29.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46
++ K + G+G+V + +DA RA+ NG + + I V +A
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96
Score = 62 (26.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 163 (62.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 19 EDC--RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 71
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 72 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 127
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 128 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 187
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 188 TVKFAANPN 196
Score = 113 (44.8 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 246 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 305
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 306 AAMAIASLNGYRLGDKILQVSFKTNKS 332
Score = 73 (30.8 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 59 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 114
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 115 -NLYISGLPRTMTQKD 129
Score = 62 (26.9 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 298
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 161 (61.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 113 (44.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 298 AAMAIASLNGYRLGDKILQVSFKTNKS 324
Score = 73 (30.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 107 -NLYISGLPRTMTQKD 121
Score = 62 (26.9 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 161 (61.7 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 38 EDC--RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 90
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 91 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 146
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 147 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 206
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 207 TVKFAANPN 215
Score = 113 (44.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 265 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 324
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 325 AAMAIASLNGYRLGDKILQVSFKTNKS 351
Score = 73 (30.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 78 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 133
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 134 -NLYISGLPRTMTQKD 148
Score = 62 (26.9 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 317
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 155 (59.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 54/194 (27%), Positives = 84/194 (43%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKE---ELEQHGL 165
D D + + RT +I L +M + E+ L SIG V S K E+ L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSL 66
Query: 166 AQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIP 225
++ G + V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 67 SK-GHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLP 125
Query: 226 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--F 283
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 185
Query: 284 GKRPIAVDWAVPKN 297
PI V +A N
Sbjct: 186 SSEPITVKFAANPN 199
Score = 116 (45.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S T W + + N+ A + MF P G V NV + + +T KGF FV T +A
Sbjct: 250 SATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 309
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
AI NG + G + + V + K+
Sbjct: 310 AMAIASLNGYRLGDKTLQVSFKTSKS 335
Score = 65 (27.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+G+V + +DA RA+ NG + + I V A R S E + + + +T
Sbjct: 73 GYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFA--RPSSESIKDA---NLYISGLPRT 127
Query: 72 MDNKD 76
M KD
Sbjct: 128 MTQKD 132
Score = 61 (26.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 301
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 152 (58.6 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 53/191 (27%), Positives = 83/191 (43%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 168
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY- 63
Query: 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKA 228
V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ------GFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTM 117
Query: 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKR 286
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 118 TQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 287 PIAVDWAVPKN 297
PI V +A N
Sbjct: 178 PITVKFAANPN 188
Score = 110 (43.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S + W + I N+ A + MF P G V NV + + +T KGF FV T +A
Sbjct: 239 SASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
AI NG + G + + V + K+
Sbjct: 299 AMAIASLNGYRLGDKTLQVFFKTSKS 324
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVA--RPSSESIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 107 -NLYISGLPRTMTQKD 121
Score = 62 (26.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 151 (58.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 56/192 (29%), Positives = 86/192 (44%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 168
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY- 63
Query: 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQK-WKLIIRNIPFK 227
V Y K A ++ L+ ++ T+ S+T K L I +P
Sbjct: 64 ------GFVNYLNAKDAERAINTLNGLRLQSKTIKV-SFARPSSETIKDANLYISGLPRT 116
Query: 228 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGK 285
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 117 MTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSS 176
Query: 286 RPIAVDWAVPKN 297
PI V +A N
Sbjct: 177 EPITVKFAANPN 188
Score = 113 (44.8 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S + W + I N+ A + MF P G V NV + + +T KGF FV T +A
Sbjct: 239 SASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
AI NG + G + + V + K+
Sbjct: 299 AMAIASLNGYRLGDKTLQVSFKTSKS 324
Score = 67 (28.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFA--RPSSETIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKD 76
+ + +TM KD
Sbjct: 107 -NLYISGLPRTMTQKD 121
Score = 62 (26.9 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 290
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 117 (46.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 82 (33.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 110 (43.8 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 191 LLHQKEIKGGTVWARQ-LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249
LL+ K++ G RQ +KT+ + ++N+ +++K+ F G + + +
Sbjct: 188 LLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVM 247
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
+ + G SKGF FV F DA A++ NG KF + V A K+
Sbjct: 248 KDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Score = 97 (39.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/88 (26%), Positives = 43/88 (48%)
Query: 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 262
+ + L K Q L ++N+ ++K++FSP G V + + + + G SKG F
Sbjct: 304 YEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGF 362
Query: 263 VKFTCKRDAESAIQKFNGQKFGKRPIAV 290
V F +A A+ + +G+ +P+ V
Sbjct: 363 VAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 87 (35.7 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 28/105 (26%), Positives = 49/105 (46%)
Query: 209 GEGSKTQ--KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266
G + TQ L + ++ F +++ D F +G V V + + T S G+ +V FT
Sbjct: 26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 85
Query: 267 CKRDAESAIQKFNGQKFGKRPIAVDWAV-PKNIYSSGGAAAGVQN 310
+DA AIQ+ N +PI V ++ ++ SG ++N
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKN 130
Score = 84 (34.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE-QRRSKV 59
+V K G + +GFG+V F +DA RAVE NG ++ V A ++ E + R +
Sbjct: 245 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRY 304
Query: 60 TQEV-QAED 67
Q + +A D
Sbjct: 305 EQNLKEAAD 313
Score = 79 (32.9 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 419 EGEDELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E D+ Q++ +++ NL + +E++K+ FS FG V S V+ KG+GF+ F
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSS-KVMRDPNGTSKGSGFVAF 365
Score = 72 (30.4 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+GYV F +DA RA++ N + G+ I V ++ HR RRS + ++++++
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS-HRDP-SVRRSGAGN-IFIKNLDES 134
Query: 72 MDNK 75
+D+K
Sbjct: 135 IDHK 138
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 64/246 (26%), Positives = 113/246 (45%)
Query: 60 TQEVQAEDIEKTMDNKDGVISGAEKHSSK-LLESGKTVKPRKAATLGIDLADKEDCSQKQ 118
T+ +A+D+ K+ K SS L+E+ K V T G A ED
Sbjct: 608 TKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANKDV------TEGSSNAHDEDVIDGP 661
Query: 119 RVARTVIIGGL----LNADMAEEVHRLAGSIGTVCSV-TYPLPKEE---LEQ-HGLAQEG 169
V+ + I L N ++ + G + V V T P PK + L G +
Sbjct: 662 TVS--IFIKNLNFSTTNQNLTDRFKVFTGFV--VAQVKTKPDPKHQGKTLSMGFGFVEFR 717
Query: 170 CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQK--WKLIIRNIPFK 227
K A+AV + + +V H+ ++K A Q G +K+ K K+I++N+PF+
Sbjct: 718 TKEQANAV----IAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFE 773
Query: 228 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287
A ++ ++F+ G + +V +P D ++GFAFV+F ++AE+A+ + +G R
Sbjct: 774 ATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLHGVHLLGRR 832
Query: 288 IAVDWA 293
+ + +A
Sbjct: 833 LVMQYA 838
Score = 116 (45.9 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
Q +L +RNI + +K + + +FSP G + V++ +T TG SKGFA+V F ++A +A
Sbjct: 343 QTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNA 402
Query: 275 IQKFNGQKFGKR 286
+ + Q F R
Sbjct: 403 YVELDKQIFQGR 414
Score = 78 (32.5 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 32/118 (27%), Positives = 53/118 (44%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAM-------------- 47
+ + + E R FG++ + EDA AVE NG+ + KI V A
Sbjct: 48 ILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVPQPMKEK 107
Query: 48 HRASLEQRRSKVTQEVQAEDIEKTM--DNKDGVISGAEKHSSKLLESGKTVKPRKAAT 103
R +L++ R K + +Q E+ +K +NK I + + +L E +T+KP T
Sbjct: 108 RREALKRFREKEEKLLQEENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMKPSSQVT 165
Score = 71 (30.1 bits), Expect = 3.2e-09, Sum P(3) = 3.2e-09
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
I + NLPF+ ++V + F++FG++ S V V + K +G F++F
Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKS-VRVPKKFDKSARGFAFVEF 810
Score = 65 (27.9 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 25/105 (23%), Positives = 46/105 (43%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
QL + K ++++N PF E+ +MF P G + + +P G A V+F
Sbjct: 522 QLKSTNQRDDK-VILVKNFPFGTTREELGEMFLPYGKLERLLMP---PAGT---IAIVQF 574
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQN 310
A +A K + ++F I ++ PK+ ++ A + N
Sbjct: 575 RDTTSARAAFTKLSYKRFKDGIIYLERG-PKDCFTKPAEADDLIN 618
Score = 63 (27.2 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVL----HQVTKRPKGTGFLKF 474
+IFI NL F N+ + RF F G VV+ V HQ G GF++F
Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEF 716
Score = 44 (20.5 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEV 452
I + N PF EE+ + F +G++
Sbjct: 534 ILVKNFPFGTTREELGEMFLPYGKL 558
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 119 (46.9 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 37/145 (25%), Positives = 65/145 (44%)
Query: 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIR 222
Q G + + + + + A ++ +++EI+G + G GS ++Q K L ++
Sbjct: 143 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 202
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
+ +K+ F G V I + +TG SKGF FV F + DA++A + +
Sbjct: 203 GLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 259
Query: 283 FGKRPIAVDWAVPKNIYSSGGAAAG 307
+ +DWA PK GG G
Sbjct: 260 IDGNKVTLDWAKPKGEGGFGGRGGG 284
Score = 88 (36.0 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V+K G + +G Y++F DA + E K GT + GR I + + + + R
Sbjct: 22 LVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG-K 78
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTV 96
++D KT D + + +L KT+
Sbjct: 79 NSTWSDDSRKT-DQSSAYVRTTSRTLQHVLGESKTL 113
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 152 (58.6 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 40/128 (31%), Positives = 65/128 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 53 RHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 112
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 294
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 113 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 172
Query: 295 -PKNIYSS 301
PK+ Y S
Sbjct: 173 APKSTYES 180
Score = 48 (22.0 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VVS++S
Sbjct: 174 PKSTYESNTKQLSYDEVVSQSS 195
Score = 40 (19.1 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVV 453
T++ + L + ++Q FS FG+++
Sbjct: 200 TVYCGGVTSGLTEQLMRQTFSPFGQIM 226
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 124 (48.7 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
GS+ K LI+ +P E+K +F +G + + + + TG S G+ FV + +D
Sbjct: 62 GSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKD 121
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
AE AI NG + + I V +A P N+Y SG
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 160
Score = 114 (45.2 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A N + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 305 WCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIA 364
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 365 SLNGYRLGDRVLQVSFKTNK 384
Score = 114 (45.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 116
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 117 MEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 176
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 177 FGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFA 232
Score = 85 (35.0 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS FG +++ ++ QVT +G GF++F
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRF 202
Score = 65 (27.9 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 99 LVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 154
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 155 -NLYVSGLPKTMTQKE 169
Score = 64 (27.6 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 351
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 100 (40.3 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 30/107 (28%), Positives = 48/107 (44%)
Query: 191 LLHQKEIKGGT-VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249
LL+ K++ G V Q G K + + ++N+ E+ +F G+ + I
Sbjct: 197 LLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIM 256
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + G SKGF FV F DA A+ NG+ F + +W V K
Sbjct: 257 RDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDK----EWFVGK 298
Score = 95 (38.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272
K+Q L ++N+ +++++ F+P G + + + + +G+S+G FV F+ +A
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEAT 381
Query: 273 SAIQKFNGQKFGKRPIAVDWAVPK 296
AI + NG+ +P+ V A K
Sbjct: 382 RAITEMNGKMIVTKPLYVALAQRK 405
Score = 93 (37.8 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+GYV +A +DA+RA+ N ++ GR I V +++ SL R+S V + ++++K+
Sbjct: 87 GYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSL--RKSGVGN-IFIKNLDKS 143
Query: 72 MDNK 75
+D+K
Sbjct: 144 IDHK 147
Score = 65 (27.9 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 419 EGEDELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E D+ Q + +++ NL + ++++++ F+ FG + S V+ + +G+GF+ F
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITS-CKVMRDPSGVSRGSGFVAF 374
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 70 KTMDNKDGVISGAEKHSSKLLE 91
KT D+K+ + A+K S + E
Sbjct: 287 KTFDDKEWFVGKAQKKSERETE 308
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 152 (58.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 40/128 (31%), Positives = 65/128 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 116
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 294
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 117 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Query: 295 -PKNIYSS 301
PK+ Y S
Sbjct: 177 APKSTYES 184
Score = 45 (20.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VV+++S
Sbjct: 178 PKSTYESNTKQLSYDEVVNQSS 199
Score = 40 (19.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVV 453
T++ + L + ++Q FS FG+++
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIM 230
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 112 (44.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 59 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 118
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 119 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 148
Score = 80 (33.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 7 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 54
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 150 (57.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 48/178 (26%), Positives = 85/178 (47%)
Query: 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTT 181
RT+ +G L + + + L IG+V T + + + + AS L T
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTK-TKVIFDGSNDPYAFVEFSDHGQASQALQTM 104
Query: 182 VKSACASVALLHQKEIKGGTVWARQLGGEGSK---TQKWKLIIRNIPFKAKVNEIKDMFS 238
K LL +E+K WA + G + SK T+ + + + ++ + ++++ F
Sbjct: 105 NKR------LLLDREMKVN--WAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQ 156
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G V + + +T+T SKG+ FV + + +AE AI++ NGQ G+R I +WA K
Sbjct: 157 PFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 214
Score = 54 (24.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 417 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
QT G++ ++++ N+ L +E++Q F++FG + ++ K +G F+KF
Sbjct: 235 QTSGDN---TSVYVGNIA-SLTEDEIRQGFASFGRITEV-----RIFKM-QGYAFVKF 282
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+Q + + + N+P++ EI + F+ VG V NV I ++ +TG +GFAFV+F+ + A+
Sbjct: 3 SQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQR 62
Query: 274 AIQKFNGQKFGKRPIAVDWA 293
A+++ NG F R + V++A
Sbjct: 63 AVEQLNGVAFNGRNLRVNYA 82
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 119 (46.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
KL + N+P+ + +F G V + +N DT S+GF FV + +AE A++K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 278 FNGQKFGKRPIAVDWAVPK 296
FN + R + V+ A P+
Sbjct: 174 FNSFEVNGRRLTVNRAAPR 192
Score = 104 (41.7 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKV 59
++ + +++ RGFG+V + +E+A +AVE N V GR++ V A R S +R+ +V
Sbjct: 144 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRV 202
Score = 81 (33.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLK 473
I++ NLP+D+D+ +++ FS G+VV V + T R +G GF++
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/105 (27%), Positives = 59/105 (56%)
Query: 209 GEGSKT-QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
GE K+ + W + +RNI + + ++ D+F+ G + N+++ + TG +KG+A +++
Sbjct: 62 GEPLKSIEGWIIFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEK 121
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWA-VPKNIYSSGGAAAGVQNK 311
+ +AE AI+ +G + ++VDWA + N S G + N+
Sbjct: 122 RSEAEDAIKNGSGYELAGLKLSVDWAFITGNASLSSGVVSFKSNR 166
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 151 (58.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L+IRN+P A+ N+++D F G + ++Y+P N TG +GF FVK+ DA A+++
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 279 NGQKFGKRPIAVDWA 293
N + G R IA+ +A
Sbjct: 109 NHKVIGGREIAIVFA 123
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 152 (58.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 40/128 (31%), Positives = 65/128 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 57 RHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 116
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 294
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 117 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Query: 295 -PKNIYSS 301
PK+ Y S
Sbjct: 177 APKSTYES 184
Score = 48 (22.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VVS++S
Sbjct: 178 PKSTYESNTKQLSYDEVVSQSS 199
Score = 42 (19.8 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFIRF 245
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 102 (41.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N +K++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVK 221
Query: 248 IPHNTD-TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ TD TG SKGF FV F DA A+++ NG+ + + V A K
Sbjct: 222 VM--TDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269
Score = 101 (40.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 98 (39.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHR----ASLEQRRSKVTQE 62
+ + +GFG+V F EDAN+AVE NG + G+ + V A + A L++R ++ QE
Sbjct: 227 TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQE 286
Score = 87 (35.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I N D+D+E +K+ FS +G+ +S V V+ T + KG GF+ F
Sbjct: 189 EFTN-VYIKNFGDDMDDERLKELFSKYGKTLS-VKVMTDPTGKSKGFGFVSF 238
Score = 85 (35.0 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ FSP G V ++ + + T S G+A+V F DAE A+ N +PI + W+
Sbjct: 29 EKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWS 87
Score = 77 (32.2 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 137 (53.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
KL I + F ++D FS G++ NV++ N +T S+GF FV F DA+ A++
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
NG+ R I VD A K GG + G
Sbjct: 66 MNGKSVDGRTIRVDEA-GKGGGGGGGRSGG 94
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 152 (58.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G + WA + T + + + ++ + ++++ F+
Sbjct: 59 RHAAAALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFA 118
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ F+ F K DAESAIQ+ NGQ G R I +WA K
Sbjct: 119 PFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRK 176
Score = 46 (21.3 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 207 TVYCGGIASGLSDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 248
>CGD|CAL0002378 [details] [associations]
symbol:SBP1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0032055 "negative regulation of translation in response to
stress" evidence=IEA] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IEA] [GO:0031370 "eukaryotic initiation factor 4G
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002378
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000003
EMBL:AACQ01000004 eggNOG:NOG72438 RefSeq:XP_722924.1
RefSeq:XP_723070.1 ProteinModelPortal:Q5ANP6 GeneID:3635280
GeneID:3635396 KEGG:cal:CaO19.13276 KEGG:cal:CaO19.5854
Uniprot:Q5ANP6
Length = 282
Score = 135 (52.6 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSK------GFAFVKFTCKRDA 271
++ + N+ FKA +E+K++F + V V IP +T K GFAFV+F K DA
Sbjct: 17 RIYVGNVDFKATEDELKELFQDLK-VTEVEIPFKENTRGDKVFKRHLGFAFVQFENKDDA 75
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVP 295
+ AI +NGQKF +R I + AVP
Sbjct: 76 DKAIATYNGQKFQRRNIFIKKAVP 99
Score = 100 (40.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 10 HRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ-EVQAEDI 68
H GF +VQF +DA++A+ NG R I +K A+ + E+++ +V + + E+I
Sbjct: 61 HLGFAFVQFENKDDADKAIATYNGQKFQRRNIFIKKAVPPPTEEEKKERVEAFKAKREEI 120
Query: 69 EKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAAT 103
+K + K +K ++ T A T
Sbjct: 121 KKVKEQKKA--EAKKKREGATADAATTANGESATT 153
Score = 100 (40.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 29/104 (27%), Positives = 49/104 (47%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVW-NV---YIPHNT-DTG------LSKGFAFVKFTC 267
+ I N+ +K V + +F + W +V +P+N G +KG AFVKF+
Sbjct: 169 IFITNLDYKVNVKTLNSLFKELKPKWIHVPSRRVPYNRRGRGGKFRKPFNKGIAFVKFSN 228
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 311
+ + A+ +FNG++ R I VD A+ I G V ++
Sbjct: 229 EETQKQAVAEFNGKEVNGREIIVDIAIDSRIPKEGSTEEDVDDE 272
Score = 37 (18.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLK 473
++TIFI NL + ++ + + F VP +R +G F K
Sbjct: 166 KDTIFITNLDYKVNVKTLNSLFKELKPKWIHVPSRRVPYNRRGRGGKFRK 215
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 150 (57.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 31/104 (29%), Positives = 57/104 (54%)
Query: 192 LHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN 251
+ ++E+K G A++ K K+++RNIPF+A V E++++F G + V +P
Sbjct: 780 ISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKELRELFCTFGELKTVRLPKK 839
Query: 252 TDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIAVDWA 293
G +GF F+ F K+DA+ A + +G+R + ++WA
Sbjct: 840 GIGGSHRGFGFIDFLTKQDAKKAFSALCHSTHLYGRR-LVLEWA 882
Score = 112 (44.5 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E + +L IRN+P+ ++K++FS G + V P ++ T KGFAFV +
Sbjct: 392 EEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPE 451
Query: 270 DAESAIQKFNGQKFGKRPIAV 290
+A SA+ + +G F R + V
Sbjct: 452 NAVSALAQLDGHTFQGRVLHV 472
Score = 99 (39.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q GE SK ++++N+P +V +++ +FSP G + V +P +GL+ A V+F
Sbjct: 577 QASGERSKCV---ILVKNLPSGVQVADLEALFSPHGSLGRVLLP---PSGLT---AIVEF 627
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGA 304
+A+ A K KF P+ ++WA P ++++ A
Sbjct: 628 LEPTEAKRAFMKLAYTKFQHVPLYLEWA-PVAVFTTPSA 665
Score = 86 (35.3 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 419 EGEDELQN-TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E ED ++ +FI N+P+ E++K+ FS G + + + +TK+PKG F+ +
Sbjct: 391 EEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTY 447
Score = 68 (29.0 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
T ++ + +R PF K ++K+ P+ V + N+D G + G+ +V + + E
Sbjct: 287 TTEFTVKLRGAPFNVKEQQVKEFMMPLKPV-AIRFAKNSD-GRNSGYVYVDLRSEAEVER 344
Query: 274 AIQKFNGQKFGKRPIAV 290
A+ + + G R I V
Sbjct: 345 AL-RLDKDYMGGRYIEV 360
Score = 61 (26.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRR--SKVT 60
TK G + R FG+V F EDA +A++ N + V ++ V+ + R SK T
Sbjct: 36 TKDG--KFRKFGFVGFKTEEDAQKALKHFNKSFVDTSRVTVELCTDFGDPNKARPWSKHT 93
Query: 61 QEVQAE-DIEKTMDNKDGVISGAEKHSSKLL 90
++ ++ D E+ ++ G +K K+L
Sbjct: 94 RQPSSKKDTEEKKTHEQG--EKEKKKPKKIL 122
Score = 60 (26.2 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 18/79 (22%), Positives = 36/79 (45%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEK 70
+GF +V + + E+A A+ +G + GR V H M +++ + + ++
Sbjct: 440 KGFAFVTYMIPENAVSALAQLDGHTFQGR---VLHVMASRLKKEKADQGPDAPGSSSYKR 496
Query: 71 TMDNKDGVISGAEKHSSKL 89
D KD SG+ + + L
Sbjct: 497 KKDAKDKAASGSSHNWNTL 515
Score = 58 (25.5 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
I + N+PF +E+++ F FGE+ + + +G GF+ F
Sbjct: 807 ILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDF 853
Score = 52 (23.4 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 417 QTEGEDELQ--NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPK----GTG 470
+ E +D++ +T+FI NL F E +++ FS G VV + + K K G G
Sbjct: 691 EEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCG-VVKSCTISKKRDKAGKLLSMGYG 749
Query: 471 FLKF 474
F+++
Sbjct: 750 FVQY 753
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+ + + N PF+ E+ + FS +G + NV I + +TG +GFAF++F + A+ A++
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 277 KFNGQKFGKRPIAVDWA 293
+ NG +F RP+ V+ A
Sbjct: 65 QMNGAEFNGRPLRVNLA 81
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 101 (40.6 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + +K++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + +G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 222 VMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QLKQERISR 290
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 101 (40.6 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + +K++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + +G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 222 VMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QLKQERISR 290
Score = 101 (40.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 77 (32.2 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 118 (46.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 63 EDSKTN---LIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPK 119
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 159
Score = 116 (45.9 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 45/176 (25%), Positives = 78/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 115
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 116 VDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 175
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 176 YGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFA 231
Score = 109 (43.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 305 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 364
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 365 SLNGYRLGDRVLQVSFKTNK 384
Score = 84 (34.6 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRF 201
Score = 65 (27.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 98 LVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 153
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 154 -NLYVSGLPKTMTQKE 168
Score = 63 (27.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 351
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 101 (40.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 100 (40.3 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + +K++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + + G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 222 VMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 97 (39.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + + + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QLKQERISR 290
Score = 77 (32.2 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 143 (55.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQ 276
K+++RNIPF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A Q
Sbjct: 833 KILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQ 892
Query: 277 KF--NGQKFGKRPIAVDWA 293
+ +G+R + ++WA
Sbjct: 893 ALCHSTHLYGRR-LVLEWA 910
Score = 101 (40.6 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L IRN+P+ + +++ +FS G + ++ P ++ T KGFAFV F A A +
Sbjct: 406 RLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAE 465
Query: 278 FNGQKFGKRPIAV 290
+GQ F R + V
Sbjct: 466 VDGQVFQGRMLHV 478
Score = 94 (38.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 417 QTEGEDELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+ E E++L ++ +FI NLP+ E++++ FS FG + + +TK+PKG F+ F
Sbjct: 394 ENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTF 453
Score = 90 (36.7 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q E SKT ++++N+P V E+++ F G + V +P G++ A V+F
Sbjct: 581 QAAAERSKTV---ILVKNLPAGTLVAELQETFGRFGSLGRVLLPEG---GIT---AIVEF 631
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
+A A + KF P+ ++WA P ++SS
Sbjct: 632 LEPLEARKAFRHLAYSKFHHTPLYLEWA-PVGVFSS 666
Score = 80 (33.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+LI++N+P K + + +F+ G + + + D G + F F+ F + +A SA+
Sbjct: 3 RLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEALSALNH 61
Query: 278 FNGQKFGKRPIAVDW 292
FN I V++
Sbjct: 62 FNRSFIDTSRITVEF 76
Score = 78 (32.5 bits), Expect = 5.0e-06, Sum P(3) = 5.0e-06
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
I + N+PF D E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 834 ILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 881
Score = 77 (32.2 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG---LSKGFAFVKFTCKRDAESAI 275
L I+N+ F +K +FS G+V + I + LS GF FV++ A+ A+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 276 QKFNG 280
++ G
Sbjct: 792 KQLQG 796
Score = 68 (29.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 31/130 (23%), Positives = 53/130 (40%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEK 70
+GF +V F E A RA +G GR + H + +++++ S+ T + Q +K
Sbjct: 446 KGFAFVTFIFPEHAVRAYAEVDGQVFQGRML---HVLP-STIKKEASEDT-DTQGSSYKK 500
Query: 71 TMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLL 130
++KD S + + + L V A + D K VA V +G
Sbjct: 501 KKESKDKANSSSSHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETKGSVAVRVALG--- 557
Query: 131 NADMAEEVHR 140
+ +EV R
Sbjct: 558 ETQLVQEVRR 567
Score = 58 (25.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K G GFG+V++ E A +A++ G V K+ V+
Sbjct: 767 KAGELLSMGFGFVEYRKPEQAQKALKQLQGHVVDSHKLEVR 807
Score = 53 (23.7 bits), Expect = 8.5e-05, Sum P(4) = 8.5e-05
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 95 TVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYP 154
+ KP + TLG + ++ED + R+ I L E++ RL G + + YP
Sbjct: 383 SAKPWQGRTLG-ENEEEEDLADSGRL----FIRNLPYTSTEEDLQRLFSKFGPLSELHYP 437
Query: 155 LPKEELEQHGLA 166
+ + G A
Sbjct: 438 IDSLTKKPKGFA 449
Score = 42 (19.8 bits), Expect = 8.5e-05, Sum P(4) = 8.5e-05
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
TK G + R FG++ F E+A A+ N + + +I V+
Sbjct: 36 TKDG--KFRKFGFIGFKSEEEALSALNHFNRSFIDTSRITVE 75
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 103 (41.3 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 184 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 242
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 243 NGQFLFDRPMHVKMDDKSVPHEDYRS 268
Score = 84 (34.6 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 415 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 461
Score = 59 (25.8 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 83 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 123
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 159 (61.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 76/316 (24%), Positives = 133/316 (42%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS----------KVT 60
R FGYV F ED +A+E+ G V G +I ++ + S + R + KVT
Sbjct: 269 RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVT 327
Query: 61 Q----EVQAEDIEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATLGIDLADKEDCS 115
Q EV + +E + +KDG G K ++ KT++ ++ ID ++ S
Sbjct: 328 QDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE--IDYTGEKGQS 385
Query: 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDAS 175
Q R + G + + A T+ V ++ Q+ Q G +
Sbjct: 386 QDHRGGKNSTWSGESKTLVLSNLSYSATE-ETLQEVFEKATHIKVPQN---QNGKSKGYA 441
Query: 176 AVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIRNIPFKAKVN 231
+ + + + A ++ +++EI+G + G GS ++Q K L ++ +
Sbjct: 442 FIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEE 501
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+K+ F G + I + +TG SKGF FV F + DA++A + + + +D
Sbjct: 502 TLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 558
Query: 292 WAVPKNIYSSGGAAAG 307
WA PK GG G
Sbjct: 559 WAKPKGEGGFGGRGGG 574
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 104 (41.7 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 293
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSSGGAAA 306
NGQ RP+ V D +VP Y S + A
Sbjct: 294 NGQFLFDRPMHVKMDDKSVPHEDYRSHDSKA 324
Score = 84 (34.6 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 466 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 512
Score = 81 (33.6 bits), Expect = 0.00089, Sum P(2) = 0.00088
Identities = 34/140 (24%), Positives = 61/140 (43%)
Query: 156 PKEELE--QHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK 213
P++E + QH + G KM+ + KS + ++K + + G G K
Sbjct: 36 PEQEKQPPQHSSSSNGVKMENDESVKEE-KSELKEKSTGNKKANRFHPYSKDKNSGTGEK 94
Query: 214 T--QKWKLIIRNIPFKAKVNEIKDMF-SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
+ ++ I NIP+ K IKD+ VG V V + + + G S+G V+F +
Sbjct: 95 KGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEF 153
Query: 271 AESAIQKFNGQKFGKRPIAV 290
+ A++ N RP+ +
Sbjct: 154 VKKALETMNKYDLSGRPLNI 173
Score = 59 (25.8 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 134 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 174
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 159 (61.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 76/316 (24%), Positives = 133/316 (42%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS----------KVT 60
R FGYV F ED +A+E+ G V G +I ++ + S + R + KVT
Sbjct: 274 RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVT 332
Query: 61 Q----EVQAEDIEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATLGIDLADKEDCS 115
Q EV + +E + +KDG G K ++ KT++ ++ ID ++ S
Sbjct: 333 QDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE--IDYTGEKGQS 390
Query: 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDAS 175
Q R + G + + A T+ V ++ Q+ Q G +
Sbjct: 391 QDHRGGKNSTWSGESKTLVLSNLSYSATE-ETLQEVFEKATHIKVPQN---QNGKSKGYA 446
Query: 176 AVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIRNIPFKAKVN 231
+ + + + A ++ +++EI+G + G GS ++Q K L ++ +
Sbjct: 447 FIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEE 506
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+K+ F G + I + +TG SKGF FV F + DA++A + + + +D
Sbjct: 507 TLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 563
Query: 292 WAVPKNIYSSGGAAAG 307
WA PK GG G
Sbjct: 564 WAKPKGEGGFGGRGGG 579
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 159 (61.0 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 76/316 (24%), Positives = 133/316 (42%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRS----------KVT 60
R FGYV F ED +A+E+ G V G +I ++ + S + R + KVT
Sbjct: 274 RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVT 332
Query: 61 Q----EVQAEDIEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATLGIDLADKEDCS 115
Q EV + +E + +KDG G K ++ KT++ ++ ID ++ S
Sbjct: 333 QDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTE--IDYTGEKGQS 390
Query: 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDAS 175
Q R + G + + A T+ V ++ Q+ Q G +
Sbjct: 391 QDHRGGKNSTWSGESKTLVLSNLSYSATE-ETLQEVFEKATHIKVPQN---QNGKSKGYA 446
Query: 176 AVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIRNIPFKAKVN 231
+ + + + A ++ +++EI+G + G GS ++Q K L ++ +
Sbjct: 447 FIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEE 506
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+K+ F G + I + +TG SKGF FV F + DA++A + + + +D
Sbjct: 507 TLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 563
Query: 292 WAVPKNIYSSGGAAAG 307
WA PK GG G
Sbjct: 564 WAKPKGEGGFGGRGGG 579
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 101 (40.6 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 100 (40.3 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + +K++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + + G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 222 VMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 97 (39.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + + + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 222 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QLKQERISR 290
Score = 77 (32.2 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 117 (46.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 207 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 35/116 (30%), Positives = 53/116 (45%)
Query: 182 VKSACASVALLHQKEIKGGTVWARQ-LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV 240
VKS + +A I G + A L G G+ W + + N+ +A + + +F P
Sbjct: 249 VKSPLSLIARFSPIAIDGMSGLAGVGLSG-GAAGAGWCIFVYNLSPEADESVLWQLFGPF 307
Query: 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
G V NV + + T KGF FV T +A AI NG + G+R + V + K
Sbjct: 308 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 110 (43.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V ++ DA++A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMSQKE 140
Score = 61 (26.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Score = 44 (20.5 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTS-VGGRK-IGVKHA 46
RG G+++F +A A++ NG +G + I VK A
Sbjct: 166 RGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 117 (46.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 207 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 35/116 (30%), Positives = 53/116 (45%)
Query: 182 VKSACASVALLHQKEIKGGTVWARQ-LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV 240
VKS + +A I G + A L G G+ W + + N+ +A + + +F P
Sbjct: 249 VKSPLSLIARFSPIAIDGMSGLAGVGLSG-GAAGAGWCIFVYNLSPEADESVLWQLFGPF 307
Query: 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
G V NV + + T KGF FV T +A AI NG + G+R + V + K
Sbjct: 308 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 110 (43.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V ++ DA++A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMSQKE 140
Score = 61 (26.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Score = 44 (20.5 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTS-VGGRK-IGVKHA 46
RG G+++F +A A++ NG +G + I VK A
Sbjct: 166 RGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 117 (46.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 207 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 110 (43.8 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ +A + + +F P G V NV + + T KGF FV T +A AI
Sbjct: 284 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G+R + V + K
Sbjct: 344 SLNGYRLGERVLQVSFKTSK 363
Score = 110 (43.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 68 (29.0 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V ++ DA++A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMSQKE 140
Score = 61 (26.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 117 (46.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 207 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 112 (44.5 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 207 LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266
L G G+ W + + N+ +A + + +F P G V NV + + T KGF FV T
Sbjct: 276 LSG-GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 334
Query: 267 CKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+A AI NG + G+R + V + K
Sbjct: 335 NYDEAAMAIASLNGYRLGERVLQVSFKTSK 364
Score = 110 (43.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 83 (34.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 68 (29.0 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V ++ DA++A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMSQKE 140
Score = 61 (26.5 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 331
Score = 48 (22.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTS-VGGRK-IGVKHAMHRASLEQRRSKVTQEVQA 65
RG G+++F +A A++ NG +G + I VK A + S + ++ +TQ Q+
Sbjct: 166 RGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA-NNPSQKTGQALLTQLYQS 221
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 117 (46.2 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 115 (45.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 109 (43.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 263 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 322
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 323 SLNGYRLGDRVLQVSFKTNK 342
Score = 82 (33.9 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 64 (27.6 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMTQKE 140
Score = 63 (27.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 309
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 103 (41.3 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 182 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 240
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 241 NGQFLFDRPMHVKMDDKSVPHEDYRS 266
Score = 84 (34.6 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 456 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 502
Score = 59 (25.8 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 81 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 121
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 101 (40.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 100 (40.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 222 VMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QLKQERISR 290
Score = 99 (39.9 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 29/109 (26%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + ++++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + +G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 222 VMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 77 (32.2 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 5.1e-08, Sum P(3) = 5.1e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 117 (46.2 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 115 (45.5 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 109 (43.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 276 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 336 SLNGYRLGDRVLQVSFKTNK 355
Score = 82 (33.9 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 64 (27.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMTQKE 140
Score = 63 (27.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 322
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 101 (40.6 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 99 (39.9 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + +K++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + +G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 222 VMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKK 269
Score = 99 (39.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 222 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QLKQERISR 290
Score = 77 (32.2 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 117 (46.2 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 115 (45.5 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 109 (43.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 277 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 336
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 337 SLNGYRLGDRVLQVSFKTNK 356
Score = 82 (33.9 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 64 (27.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMTQKE 140
Score = 63 (27.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 323
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 117 (46.2 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 207 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 35/116 (30%), Positives = 53/116 (45%)
Query: 182 VKSACASVALLHQKEIKGGTVWARQ-LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV 240
VKS + +A I G + A L G G+ W + + N+ +A + + +F P
Sbjct: 249 VKSPLSLIARFSPIAIDGMSGLAGVGLSG-GAAGAGWCIFVYNLSPEADESVLWQLFGPF 307
Query: 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
G V NV + + T KGF FV T +A AI NG + G+R + V + K
Sbjct: 308 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 111 (44.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 82 (33.9 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ +L Q T +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V ++ DA++A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMSQKE 140
Score = 61 (26.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Score = 44 (20.5 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTS-VGGRK-IGVKHA 46
RG G+++F +A A++ NG +G + I VK A
Sbjct: 166 RGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 117 (46.2 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 207 LGGEGSKTQ-KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
LG G+ K LI+ +P +E K +F +G + + + + TG S G+ FV +
Sbjct: 28 LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNY 87
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+ DA+ AI NG K + I V +A P N+Y SG
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 35/116 (30%), Positives = 53/116 (45%)
Query: 182 VKSACASVALLHQKEIKGGTVWARQ-LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV 240
VKS + +A I G + A L G G+ W + + N+ +A + + +F P
Sbjct: 249 VKSPLSLIARFSPIAIDGMSGLAGVGLSG-GAAGAGWCIFVYNLSPEADESVLWQLFGPF 307
Query: 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
G V NV + + T KGF FV T +A AI NG + G+R + V + K
Sbjct: 308 GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 111 (44.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 44/176 (25%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M + E L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
+ A ++ L+ +++ T+ + + L + +P E++ +FS
Sbjct: 88 SDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 82 (33.9 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ +L Q T +G GF++F
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF 173
Score = 68 (29.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V ++ DA++A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMSQKE 140
Score = 61 (26.5 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Score = 44 (20.5 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTS-VGGRK-IGVKHA 46
RG G+++F +A A++ NG +G + I VK A
Sbjct: 166 RGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFA 203
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 101 (40.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 100 (40.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 222 VMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QLKQERISR 290
Score = 99 (39.9 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 29/109 (26%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + ++++FS G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + +G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 222 VMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269
Score = 77 (32.2 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ I + + SL R+S V V ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 73 (30.8 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 340
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 103 (41.3 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 285 NGQFLFDRPMHVKMDDKSVPHEDYRS 310
Score = 84 (34.6 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 490 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 536
Score = 59 (25.8 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 125 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 165
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 133 (51.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+ + + N PF+ +++ + FS G V NV I + +TG +GFAFV+FT + A+ A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 277 KFNGQKFGKRPIAVDWAVPKN 297
+FNG F R + V+ A +N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 133 (51.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+ + + N PF+ +++ + FS G V NV I + +TG +GFAFV+FT + A+ A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 277 KFNGQKFGKRPIAVDWAVPKN 297
+FNG F R + V+ A +N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRN 84
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 117 (46.2 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 31/104 (29%), Positives = 48/104 (46%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q GG + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 78 QTGGSNDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 136
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 137 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 180
Score = 110 (43.8 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 62/261 (23%), Positives = 109/261 (41%)
Query: 43 VKHAMHRASLEQRRSKVTQEVQAEDIEKTMD-NKDGVISGAEKHSSKLLESGKTVKPRKA 101
+ ++ A L S TQ QA D+ + + G+++ + S + E T P A
Sbjct: 4 ISRTLNAALLSNEGSTETQWRQA-DLPQLQGWAEKGLLTQPKMIISNM-EPQVTNGPNSA 61
Query: 102 ATLGIDLADKEDCSQKQRV------ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYP 154
G ++ C + ++T +I L +M +E R L GSIG + S
Sbjct: 62 TANGPS-SNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK-- 118
Query: 155 LPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKT 214
L ++++ G + V Y K A ++ L+ ++ T+ +
Sbjct: 119 LVRDKIT-------GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASI 171
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
+ L + +P E++ +FS G + I + TG S+G F++F + +AE A
Sbjct: 172 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEA 231
Query: 275 IQKFNGQK-FGK-RPIAVDWA 293
I+ NGQK G PI V +A
Sbjct: 232 IKGLNGQKPSGAAEPITVKFA 252
Score = 102 (41.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 325 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 384
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 385 SLNGYRLGDRVLQVSFKTNK 404
Score = 83 (34.3 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRF 222
Score = 64 (27.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 119 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 174
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 175 -NLYVSGLPKTMTQKE 189
Score = 60 (26.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 371
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 103 (41.3 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 285 NGQFLFDRPMHVKMDDKSVPHEDYRS 310
Score = 84 (34.6 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 497 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 543
Score = 59 (25.8 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 125 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 165
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 117 (46.2 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 63 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 119
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 159
Score = 115 (45.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 115
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 175
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 176 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 231
Score = 109 (43.4 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 304 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 363
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 364 SLNGYRLGDRVLQVSFKTNK 383
Score = 82 (33.9 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 201
Score = 64 (27.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 98 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 153
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 154 -NLYVSGLPKTMTQKE 168
Score = 63 (27.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 350
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 117 (46.2 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 64 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 160
Score = 115 (45.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 116
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 117 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 176
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 177 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 232
Score = 109 (43.4 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 305 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 364
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 365 SLNGYRLGDRVLQVSFKTNK 384
Score = 82 (33.9 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 202
Score = 64 (27.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 99 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 154
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 155 -NLYVSGLPKTMTQKE 169
Score = 63 (27.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 351
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 117 (46.2 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 32/100 (32%), Positives = 48/100 (48%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI+ +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 64 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 120
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 160
Score = 115 (45.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 116
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 117 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 176
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 177 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 232
Score = 106 (42.4 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 306 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 365
Query: 277 KFNGQKFGKRPIAV 290
NG + G R + V
Sbjct: 366 SLNGYRLGDRVLQV 379
Score = 82 (33.9 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 202
Score = 64 (27.6 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 99 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 154
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 155 -NLYVSGLPKTMTQKE 169
Score = 63 (27.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 352
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 103 (41.3 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 285 NGQFLFDRPMHVKMDDKSVPHEDYRS 310
Score = 84 (34.6 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 560
Score = 59 (25.8 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 125 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 165
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 143 (55.4 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 213 KTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRD 270
K QK K+++RNIPF+A V EI+++FS G + V +P TG +GF FV F K+D
Sbjct: 490 KKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQD 549
Query: 271 AESAIQKF--NGQKFGKRPIAVDWA 293
A+ A + +G+R + ++WA
Sbjct: 550 AKKAFNALCHSTHLYGRR-LVLEWA 573
Score = 103 (41.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E ++ +L +RN+PF + +++ +FS G + ++ P + T KGFAF+ +
Sbjct: 71 EEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 130
Query: 270 DAESAIQKFNGQKFGKR 286
A A + +GQ F R
Sbjct: 131 HAVKAYAEMDGQVFQGR 147
Score = 94 (38.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q GE SKT ++++N+P E++ +F G + V +P G++ A V+F
Sbjct: 255 QAAGERSKTV---ILVKNLPATTSTAELEAVFGKHGSLGRVLLPTG---GIT---AIVEF 305
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
+A+ A K KF P+ ++WA P ++SS
Sbjct: 306 LEPIEAKQAFTKLAYSKFHSVPLYLEWA-PMGVFSS 340
Score = 86 (35.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD---TGLSKGFAFVKFTCKRDAESAI 275
L I+N+ F +K+ FS VG V + I D T LS GF FV++ A+ A+
Sbjct: 395 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 454
Query: 276 QKFNG 280
++ G
Sbjct: 455 RRLQG 459
Score = 69 (29.3 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
I + N+PF E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 497 ILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDF 544
Score = 60 (26.2 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 28/133 (21%), Positives = 53/133 (39%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAED--- 67
+GF ++ + + E A +A +G GR MH ++ K+ +++ AE+
Sbjct: 119 KGFAFITYMIPEHAVKAYAEMDGQVFQGRM------MHLLPSTIKKLKI-EDIDAEESSS 171
Query: 68 IEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIG 127
+K + KD S + + + L V A + D K VA V +G
Sbjct: 172 YKKQKEAKDKANSASSHNWNTLFVGTNAVADAIAQKYNASKSQVLDHESKDSVAVRVALG 231
Query: 128 GLLNADMAEEVHR 140
++ +E+ R
Sbjct: 232 ---ETELVQEIRR 241
Score = 53 (23.7 bits), Expect = 0.00077, Sum P(3) = 0.00077
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 417 QTEGEDELQN----TIFICNLPFDLDNEEVKQRFSAFGEVVS 454
+ E EDE ++ T+FI NL F +K+ FS G V S
Sbjct: 380 EDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKS 421
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 108 (43.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+++ KL + N+ + + +F G V + +N +T S+GF FV + +AE+
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 274 AIQKFNGQKFGKRPIAVDWAVPK 296
A++KFN R + V+ A P+
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR 229
Score = 89 (36.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
+++ NLP+D+DN ++Q FS G+VV V + T R +G GF+
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFV 290
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 103 (41.3 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 293
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 294 NGQFLFDRPMHVKMDDKSVPHEEYRS 319
Score = 84 (34.6 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 523 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 569
Score = 59 (25.8 bits), Expect = 7.9e-08, Sum P(3) = 7.9e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 134 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 174
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 103 (41.3 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 134 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 192
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 193 NGQFLFDRPMHVKMDDKSVPHEDYRS 218
Score = 84 (34.6 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 534 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 580
Score = 59 (25.8 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 71 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 111
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 125 (49.1 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 204 ARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263
A+Q G S L I N+ F A + + ++F G V + +P + DT KGF +V
Sbjct: 258 AKQYGDSQSPPSD-TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYV 316
Query: 264 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
+F+ +A++A++ NG+ RP +D++ P++
Sbjct: 317 QFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRD 350
Score = 89 (36.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292
+K F +G V + TG S+G+ +V F K AE A+++ G++ RPI +D
Sbjct: 184 LKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDM 243
Query: 293 AVPK 296
+ K
Sbjct: 244 STGK 247
Score = 88 (36.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
+T+FI NL F+ + + + F +G V+S VP H T++PKG G+++F
Sbjct: 270 DTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPT-HPDTQQPKGFGYVQF 318
Score = 73 (30.8 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
++ ++ + + RG+GYV F A +A+E G + GR I +
Sbjct: 199 VIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINL 241
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 125 (49.1 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 204 ARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263
A+Q G S L I N+ F A + + ++F G V + +P + DT KGF +V
Sbjct: 258 AKQYGDSQSPPSD-TLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYV 316
Query: 264 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
+F+ +A++A++ NG+ RP +D++ P++
Sbjct: 317 QFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRD 350
Score = 89 (36.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292
+K F +G V + TG S+G+ +V F K AE A+++ G++ RPI +D
Sbjct: 184 LKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDM 243
Query: 293 AVPK 296
+ K
Sbjct: 244 STGK 247
Score = 88 (36.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
+T+FI NL F+ + + + F +G V+S VP H T++PKG G+++F
Sbjct: 270 DTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPT-HPDTQQPKGFGYVQF 318
Score = 73 (30.8 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
++ ++ + + RG+GYV F A +A+E G + GR I +
Sbjct: 199 VIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINL 241
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 155 (59.6 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 205 RQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264
+QL G SK +++ + + ++ + + ++KD F+P G + + + + T SKG+ FV
Sbjct: 84 QQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVS 143
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
F K +AE+AI NGQ G R I +WA K
Sbjct: 144 FVKKSEAETAITAMNGQWLGSRSIRTNWATRK 175
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 121 (47.7 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L IRNI ++A + + +FS G + V+I +T TG SKGF +V+F K DA A +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 278 FNGQKFGKR 286
+ Q F R
Sbjct: 371 LDKQIFQGR 379
Score = 121 (47.7 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
K+II+N+PF+A ++ ++F G + +V +P D ++GFAFV+F ++AE+A+ +
Sbjct: 718 KIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQ 776
Query: 278 FNGQKFGKRPIAVDWAV--PKN 297
G R + + +A P+N
Sbjct: 777 LEGVHLLGRRLVMQYAEQDPEN 798
Score = 85 (35.0 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPV-G-LVWNVYI---PHNTDTGLSKGFAFVKFTCKRDAES 273
+ ++N+ F V + D+F P+ G +V V P N+ LS GF FV+F K A
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678
Query: 274 AIQKFNG 280
AI +G
Sbjct: 679 AISTLDG 685
Score = 71 (30.1 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 30/127 (23%), Positives = 51/127 (40%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXXX 487
I I NLPF+ +++ + F AFG++ S V V + + +G F++F
Sbjct: 719 IIIKNLPFEATRKDLLELFGAFGQLKS-VRVPKKFDQSARGFAFVEFNLMKEAETAMSQL 777
Query: 488 XXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDK-SKNETNDHRNLYLAKEGLILEGTPAA 546
G+ L GR+L + EI++ +K LA L +G
Sbjct: 778 E-----GVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVATQNLAAARLAGKGKIEL 832
Query: 547 EGVSDDD 553
E ++D
Sbjct: 833 EEKDEED 839
Score = 69 (29.3 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 6 GSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQA 65
G GFG+V+F E AN A+ +G + G K+ +K + H+ S + + ++
Sbjct: 658 GKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLS-HKQGTGTSASSIKKSGKS 716
Query: 66 EDI 68
I
Sbjct: 717 SKI 719
Score = 66 (28.3 bits), Expect = 8.1e-05, Sum P(3) = 8.1e-05
Identities = 34/133 (25%), Positives = 57/133 (42%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQE 62
T+ G + +GF YVQF EDA RA + GR +H ++++ E
Sbjct: 345 TRTGKS--KGFLYVQFLKKEDATRAYRSLDKQIFQGR------LLHILPADKKKDHRLDE 396
Query: 63 VQAEDI--EKTMDNKDGVISGAEKHS-SKLLESGKTVKPRKAATLGI---DLADKEDCSQ 116
+++ +K + K + + S + L + V A+ LG+ L D E+ S
Sbjct: 397 FDLKNLPLKKQRELKKKAQAAKTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSS 456
Query: 117 --KQRVARTVIIG 127
KQ +A +IG
Sbjct: 457 AVKQALAEAHVIG 469
Score = 57 (25.1 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 21/91 (23%), Positives = 47/91 (51%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRA------SLEQRRS 57
KK + E R F ++ + + A RAV+ N + + +I V+ A + S +++R
Sbjct: 35 KKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARIEVEFAKTFSDPTVPLSFKEKRK 94
Query: 58 KVTQEVQAEDIEKTMDNKDGVISGAEKHSSK 88
+ Q+++ E E+ ++ + + + A+K +K
Sbjct: 95 REEQKLKDEQ-ERLLEQE--LRAQAKKQKTK 122
Score = 52 (23.4 bits), Expect = 5.5e-06, Sum P(4) = 5.5e-06
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 419 EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452
E +D++ I + N PF +E+ + FSA+G++
Sbjct: 489 ERDDKI---ILVKNFPFGTTIDEIGELFSAYGQL 519
Score = 40 (19.1 bits), Expect = 5.5e-06, Sum P(4) = 5.5e-06
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 553 DMSKRQM-LHEKKMTKLQSPNFHVS--RTRLVIYNLPKSMTEKGLKKL 597
D K Q+ L K+ T + + S ++++I NLP T K L +L
Sbjct: 689 DGHKLQLKLSHKQGTGTSASSIKKSGKSSKIIIKNLPFEATRKDLLEL 736
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 137 (53.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/92 (32%), Positives = 55/92 (59%)
Query: 208 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
GG+ +K K+II+N+PF++ + EI+ +F+ G + +V IP + G +GF FV+F
Sbjct: 787 GGQPNKPSS-KIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGG-HRGFGFVEFLT 844
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWAVP-KNI 298
+ +A++A++ F R + + +A KNI
Sbjct: 845 EEEAKNAMEALGNSHFYGRHLVLQYAEQDKNI 876
Score = 107 (42.7 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
++ +RN+ + K +++ +FS G + ++IP + D+ SKG AF+ + +A A+
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 278 FNGQKFGKRPIAV 290
+G+ F R I V
Sbjct: 422 MDGKVFQGRLIHV 434
Score = 106 (42.4 bits), Expect = 7.8e-06, Sum P(4) = 7.8e-06
Identities = 27/107 (25%), Positives = 55/107 (51%)
Query: 194 QKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYI-PHNT 252
+K ++ V + +G +GSK L+++NIPFK + +E+ ++FS G + V + P T
Sbjct: 530 KKFLEDQGVIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVLSPART 589
Query: 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIY 299
A +++ +A+ + KF P+ ++WA P+ ++
Sbjct: 590 -------IALIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWA-PEGVF 628
Score = 75 (31.5 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
I I NLPF+ +E+++ F+A+GE+ S V + + +G GF++F
Sbjct: 797 IIIKNLPFESTIKEIRKLFTAYGEIQS-VRIPKKPNGGHRGFGFVEF 842
Score = 69 (29.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 20/79 (25%), Positives = 44/79 (55%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
GFG+++F+ + A ++ NG+S+ G +I +K + + Q +K +E+ E+ +++
Sbjct: 725 GFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINK-RRELP-ENSKQS 782
Query: 72 MDNKDGVISGAEKHSSKLL 90
+ + G K SSK++
Sbjct: 783 IKSNGGQ---PNKPSSKII 798
Score = 61 (26.5 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 25/120 (20%), Positives = 48/120 (40%)
Query: 5 KGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQ 64
K + R FG++ F+ + A A+ + NGT + KI V+ A + + R +
Sbjct: 37 KKDGKSRLFGFIGFSTEQSAKNALSL-NGTFIDTSKIVVETATVASETTENRPWSKYSIG 95
Query: 65 AEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTV 124
+ ++ + + K LE K +K+ T + A+ E+ + Q V
Sbjct: 96 SSSNKRLTEMEKEKEKKELKRKQDKLEQQSNKKQKKSHTNSLLDAELENDPEYQEFLNLV 155
Score = 57 (25.1 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 426 NTIFIC-NLPFDLDNEEVKQRFSAFGEV 452
NT+ + N+PF E+ + FS FGE+
Sbjct: 552 NTVLLVKNIPFKTQEHELHELFSKFGEL 579
Score = 53 (23.7 bits), Expect = 6.1e-06, Sum P(4) = 6.1e-06
Identities = 20/95 (21%), Positives = 36/95 (37%)
Query: 385 KEQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQNTIFICNLPFDLDNEEVKQ 444
K + S+K+ + S +V + G D ++I NL + NE +
Sbjct: 639 KSEKSEKSSDSSNDKKEVESTTKTAATTTTTKK--GTDNNTQFVYIKNLNWKTTNETLVG 696
Query: 445 RFSAFGEVVSFVPVLHQVTKRPK-----GTGFLKF 474
+F + + V+ K P G GF++F
Sbjct: 697 KFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEF 731
Score = 51 (23.0 bits), Expect = 2.5e-06, Sum P(4) = 2.5e-06
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 553 DMSKRQMLHEKKMTKLQSPNFHVSR--TRLVIYNLPKSMTEKGLKKL 597
+++KR+ L E ++S ++ ++++I NLP T K ++KL
Sbjct: 768 EINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKL 814
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 114 (45.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 36 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 95
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 96 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 136
Score = 114 (45.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 42 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 92
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 93 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 152
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 153 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 208
Score = 102 (41.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 268 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 327
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 328 SLNGYRLGDRVLQVSFKTNK 347
Score = 82 (33.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 178
Score = 64 (27.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 75 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 130
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 131 -NLYVSGLPKTMTQKE 145
Score = 60 (26.2 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 314
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 102 (41.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 39/138 (28%), Positives = 64/138 (46%)
Query: 161 EQHGLAQEGCK-MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEG-SKTQKWK 218
E+H A + + M+ + + TV A + Q E+K QL E S+ Q
Sbjct: 240 EKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKF---EQLKQERISRYQGVN 296
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L I+N+ +++ FSP G + + + + G SKGF FV F+ +A A+ +
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEEGRSKGFGFVCFSSPEEATKAVTEM 354
Query: 279 NGQKFGKRPIAVDWAVPK 296
NG+ G +P+ V A K
Sbjct: 355 NGRIVGSKPLYVALAQRK 372
Score = 102 (41.0 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
+ + RGFG+V + EDAN+AVE NGT + G+ + V A + + + ++++ E
Sbjct: 228 TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQE 287
Query: 67 DIEK 70
I +
Sbjct: 288 RISR 291
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N +K++F G +V
Sbjct: 163 LLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVK 222
Query: 248 IPHNTD-TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ TD TG S+GF FV + DA A+++ NG + + + V A K
Sbjct: 223 VM--TDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270
Score = 78 (32.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N V G+ I + + SL R+S V V ++++K+
Sbjct: 54 GYAYVNFQQPADAERALDTMNFDVVKGKPIRIMWSQRDPSL--RKSGVGN-VFIKNLDKS 110
Query: 72 MDNK 75
+DNK
Sbjct: 111 IDNK 114
Score = 75 (31.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L + R KG GF+ F
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCF 341
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 114 (45.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 102 (41.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 283 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 342
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 343 SLNGYRLGDRVLQVSFKTNK 362
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 64 (27.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 132
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 133 -NLYVSGLPKTMTQKE 147
Score = 60 (26.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 329
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 114 (45.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 102 (41.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 283 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 342
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 343 SLNGYRLGDRVLQVSFKTNK 362
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 64 (27.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 132
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 133 -NLYVSGLPKTMTQKE 147
Score = 60 (26.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 329
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 149 (57.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 39/128 (30%), Positives = 65/128 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A +++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 57 RHAASALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFA 116
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV---- 294
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA
Sbjct: 117 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 176
Query: 295 -PKNIYSS 301
PK+ Y S
Sbjct: 177 APKSTYES 184
Score = 44 (20.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VV+++S
Sbjct: 178 PKSTYESNTKQLSYDDVVNQSS 199
Score = 41 (19.5 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 204 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 245
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 114 (45.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 102 (41.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 288 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 347
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 348 SLNGYRLGDRVLQVSFKTNK 367
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 64 (27.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 82 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 137
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 138 -NLYVSGLPKTMTQKE 152
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 334
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 203
Score = 102 (41.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 290 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 349
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 350 SLNGYRLGDRVLQVSFKTNK 369
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 64 (27.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMTQKE 140
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 336
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 31 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 114 (45.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 203
Score = 102 (41.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 290 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 349
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 350 SLNGYRLGDRVLQVSFKTNK 369
Score = 82 (33.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 173
Score = 64 (27.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMTQKE 140
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 336
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A ++ D F+ G + N+++ + TG KG+A V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETY 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ+ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQELMGQPISVDW 148
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 114 (45.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 114 (45.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 102 (41.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 357 SLNGYRLGDRVLQVSFKTNK 376
Score = 82 (33.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 132
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 133 -NLYVSGLPKTMTQKE 147
Score = 60 (26.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 343
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 54 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 113
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 114 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 154
Score = 114 (45.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 60 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 110
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 111 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 170
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 171 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 226
Score = 102 (41.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 299 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 358
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 359 SLNGYRLGDRVLQVSFKTNK 378
Score = 82 (33.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 196
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 93 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 148
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 149 -NLYVSGLPKTMTQKE 163
Score = 60 (26.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 345
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 151 (58.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 37/118 (31%), Positives = 62/118 (52%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A AS+A ++ ++I G V WA + T + + + ++ + ++I+ F+
Sbjct: 58 RHAAASLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFA 117
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +WA K
Sbjct: 118 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 175
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ V V KG F++F
Sbjct: 205 TVYCGGVTTGLTEQLMRQTFSPFGQIME-VRVFPD-----KGYSFVRF 246
Score = 40 (19.1 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PK+ E K L D VV+++S
Sbjct: 179 PKATYETNTKHLSFDEVVNQSS 200
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 42 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 101
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 102 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 142
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 48 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 98
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 99 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 158
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 159 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 214
Score = 102 (41.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 301 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 360
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 361 SLNGYRLGDRVLQVSFKTNK 380
Score = 82 (33.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 184
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 81 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 136
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 137 -NLYVSGLPKTMTQKE 151
Score = 60 (26.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 347
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 102 (41.0 bits), Expect = 0.00022, Sum P(2) = 0.00021
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 302 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 362 SLNGYRLGDRVLQVSFKTNK 381
Score = 82 (33.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 64 (27.6 bits), Expect = 0.00022, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 82 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 137
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 138 -NLYVSGLPKTMTQKE 152
Score = 60 (26.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 348
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 125 (49.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E S + KL + N+PF ++ +F G V V + ++ TG S+GF FV +
Sbjct: 84 EQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVS 143
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVP 295
+ E+A Q+FNG + RP+ V+ P
Sbjct: 144 EVEAAAQQFNGYELDGRPLRVNAGPP 169
Score = 97 (39.2 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 208 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
GG G+ + ++ + N+ + ++ +FS G V + ++ D+G SKGF FV +
Sbjct: 196 GGSGAGSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWA 293
++ ++AI+ +G R I V A
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 65 (27.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N +++ NL + +D+ ++ FS G+VV + + + R KG GF+ +
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252
Score = 59 (25.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
++ K + RGFG+V + + + A + NG + GR + V
Sbjct: 122 VIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 93 (37.8 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+K L ++N+ +++++F+ G + + + + +G SKG FV F+ +
Sbjct: 322 GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASE 380
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPK 296
A + + NG+ G +P+ V A K
Sbjct: 381 ASRVLNEMNGKMVGGKPLYVALAQRK 406
Score = 92 (37.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 27/107 (25%), Positives = 50/107 (46%)
Query: 191 LLHQKEIKGGTVWARQLGGEGSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249
+L+ K+I G ++ + K+ + ++N+ +E+K F G + + +
Sbjct: 198 VLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVM 257
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ D G S+ F FV F DA A++ NG+KF + +W V K
Sbjct: 258 RDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDK----EWYVGK 299
Score = 87 (35.7 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
+N G+GYV ++ +DA +A++ N + + G+ I + ++ +S RRS V + +
Sbjct: 83 TNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSA--RRSGVGN-LFVK 139
Query: 67 DIEKTMDNK 75
+++K++DNK
Sbjct: 140 NLDKSVDNK 148
Score = 77 (32.2 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK 58
+V + G + R FG+V F EDA RAVE NG ++ V A ++ E S+
Sbjct: 255 VVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSR 312
Score = 66 (28.3 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 20/95 (21%), Positives = 44/95 (46%)
Query: 381 VKGNKEQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDELQN-TIFICNLPFDLDN 439
+ G K D + V ++ K S+ ++G ++ +++ NL + +
Sbjct: 285 LNGKKFDDKEWYVGKAQKKSE---RELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTD 341
Query: 440 EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E++++ F+ FG + S V+ + KG+GF+ F
Sbjct: 342 EKLRELFAEFGTITS-CKVMRDPSGTSKGSGFVAF 375
Score = 38 (18.4 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 70 KTMDNKDGVISGAEKHSSKLLE 91
K D+K+ + A+K S + LE
Sbjct: 288 KKFDDKEWYVGKAQKKSERELE 309
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 129 (50.5 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++ NG++
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 283 FGKRPIAVDWAVP-KN 297
F R + VD A KN
Sbjct: 63 FSGRALRVDNAASEKN 78
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 101 (40.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 218 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 275
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 276 TKAVTEMNGRIVGSKPLYVALAQRK 300
Score = 100 (40.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 151 VMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFE 210
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 211 QLKQERISR 219
Score = 99 (39.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/109 (26%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + ++++FS G +V
Sbjct: 91 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVK 150
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + +G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 151 VMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 198
Score = 76 (31.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQR---RSKVTQEVQ 64
N +G+ +V F E AN+A+E NG + RK+ V R E ++K V
Sbjct: 64 NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVY 123
Query: 65 AEDIEKTMDNKD 76
++ + +D+++
Sbjct: 124 IKNFGEEVDDEN 135
Score = 73 (30.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 269
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 96 (38.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
KL I+N+ ++++ FS G + V + + G SKGF + F+ DA A+ +
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAMTE 351
Query: 278 FNGQKFGKRPIAV 290
NG+ G +P+++
Sbjct: 352 MNGRILGSKPLSI 364
Score = 90 (36.7 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 212 SKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
SK ++ + I+N +KD+FS G +V + ++ +G SKGF FV F
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEA 242
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ A+++ NG+ + I V A K
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKK 268
Score = 87 (35.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V S + +GFG+V F E A +AVE NG + G+ I V A + + ++ +
Sbjct: 221 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 280
Query: 62 EVQAEDI 68
+++ E I
Sbjct: 281 QLKRERI 287
Score = 78 (32.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F + DA +A++ N + G+ I + + A L RRS + V ++++K+
Sbjct: 52 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYL--RRSGIGN-VFIKNLDKS 108
Query: 72 MDNK 75
+DNK
Sbjct: 109 IDNK 112
Score = 67 (28.6 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E+++ FS+FG + S V V+ Q + KG G + F
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSI-SRVKVM-QEEGQSKGFGLICF 339
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 114 (45.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 112 (44.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 102 (41.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 288 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 347
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 348 SLNGYRLGDRVLQVSFKTNK 367
Score = 82 (33.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 64 (27.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 82 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 137
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 138 -NLYVSGLPKTMTQKE 152
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 334
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 101 (40.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 262 VMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFE 321
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 322 QLKQERISR 330
Score = 101 (40.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 329 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 386
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 387 TKAVTEMNGRIVGSKPLYVALAQRK 411
Score = 101 (40.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + +K++FS G +V
Sbjct: 202 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 261
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + +G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 262 VMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 309
Score = 88 (36.0 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 32/122 (26%), Positives = 55/122 (45%)
Query: 172 MDASAVLYTTVKSACASVALLHQKEIKGGTV---WARQLGGEGSKTQKWKLIIRNIPFKA 228
+D +L+ T +A ++ ++ IKG + W+ Q K+ + I+N+
Sbjct: 92 VDHLKMLHATGGTAERALDTMNFDVIKGKPIRIMWS-QRDPSLRKSGVGNVFIKNLDKSI 150
Query: 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288
+ D FS G + + + D SKG+AFV F + A+ AI+K NG R +
Sbjct: 151 DNKALYDTFSAFGNILSCKVV--CDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 208
Query: 289 AV 290
V
Sbjct: 209 FV 210
Score = 80 (33.2 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I N ++D+E +K+ FS FG+ +S V V+ + + KG GF+ +
Sbjct: 229 EFTN-VYIKNFGEEVDDESLKELFSQFGKTLS-VKVMRDPSGKSKGFGFVSY 278
Score = 73 (30.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 380
Score = 70 (29.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
N +G+ +V F E A++A+E NG + RK+ V R E
Sbjct: 175 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 220
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 149 (57.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 30/104 (28%), Positives = 53/104 (50%)
Query: 204 ARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263
AR G + S L + N+PF A + + ++F P G V + +P + ++G KGF +V
Sbjct: 372 ARSFGDQTSPESD-TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYV 430
Query: 264 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
+++ +A A + G + RPI +D++ P+ GG G
Sbjct: 431 QYSSVDEARKAYNELQGAEIDGRPIRLDFSTPRANNGGGGGGRG 474
Score = 94 (38.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHR-ASLEQRRSKV 59
++T++ + RGFGYV+F DA +A E + GRKI + +A R A+ +Q K
Sbjct: 307 IMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKE 366
Query: 60 TQEVQAEDI-EKTMDNKDGVISG 81
+ +A ++T D + G
Sbjct: 367 RAQNRARSFGDQTSPESDTLFVG 389
Score = 89 (36.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 30/105 (28%), Positives = 46/105 (43%)
Query: 212 SKTQKW---KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
SKT++ L + N+ + + F G + + I DTG S+GF +V+FT
Sbjct: 269 SKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNA 327
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAV--PKNIYSSGGAAAGVQNK 311
DA A + + R I +D+A P N GG QN+
Sbjct: 328 ADAAKAYEAMKEHEIDGRKINLDYATGRPAN-KDQGGFKERAQNR 371
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 417 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
QT E + T+F+ NLPF + + V + F G V+ + RPKG G++++
Sbjct: 378 QTSPESD---TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQY 432
Score = 47 (21.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 53 EQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKE 112
E ++++ + E +++ + + KD S +E S ES + KP K+A + K
Sbjct: 101 EAKKAESSSESESDSSDSDEEMKDA--SSSESDSES--ESEEEKKPAKSAKAEPKVVKKA 156
Query: 113 DCSQKQ 118
+ S+ +
Sbjct: 157 ESSESE 162
Score = 44 (20.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 19/120 (15%), Positives = 44/120 (36%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V KKG+ + ++DA + ++I + A + ++ + T
Sbjct: 7 VVKKGAESAGKLADKALSKVKDAG-VTKATQSPKAKSKQIAREIASKEKKPKSKKKEPTP 65
Query: 62 EVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVA 121
+E ++ D S +E K ++ + +KA + +D D ++ + A
Sbjct: 66 SSSSESESESESESDSSSSESESEDEKPVKKEVKKEAKKAESSSESESDSSDSDEEMKDA 125
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 143 (55.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 213 KTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRD 270
K QK K+++RNIPF+A V EI+++FS G + V +P TG +GF FV F K+D
Sbjct: 814 KKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQD 873
Query: 271 AESAIQKF--NGQKFGKRPIAVDWA 293
A+ A + +G+R + ++WA
Sbjct: 874 AKKAFNALCHSTHLYGRR-LVLEWA 897
Score = 103 (41.3 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E ++ +L +RN+PF + +++ +FS G + ++ P + T KGFAF+ +
Sbjct: 395 EEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 454
Query: 270 DAESAIQKFNGQKFGKR 286
A A + +GQ F R
Sbjct: 455 HAVKAYAEMDGQVFQGR 471
Score = 94 (38.1 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q GE SKT ++++N+P E++ +F G + V +P G++ A V+F
Sbjct: 579 QAAGERSKTV---ILVKNLPATTSTAELEAVFGKHGSLGRVLLPTG---GIT---AIVEF 629
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
+A+ A K KF P+ ++WA P ++SS
Sbjct: 630 LEPIEAKQAFTKLAYSKFHSVPLYLEWA-PMGVFSS 664
Score = 86 (35.3 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD---TGLSKGFAFVKFTCKRDAESAI 275
L I+N+ F +K+ FS VG V + I D T LS GF FV++ A+ A+
Sbjct: 719 LFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 778
Query: 276 QKFNG 280
++ G
Sbjct: 779 RRLQG 783
Score = 69 (29.3 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
I + N+PF E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 821 ILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDF 868
Score = 60 (26.2 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 28/133 (21%), Positives = 53/133 (39%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAED--- 67
+GF ++ + + E A +A +G GR MH ++ K+ +++ AE+
Sbjct: 443 KGFAFITYMIPEHAVKAYAEMDGQVFQGRM------MHLLPSTIKKLKI-EDIDAEESSS 495
Query: 68 IEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIG 127
+K + KD S + + + L V A + D K VA V +G
Sbjct: 496 YKKQKEAKDKANSASSHNWNTLFVGTNAVADAIAQKYNASKSQVLDHESKDSVAVRVALG 555
Query: 128 GLLNADMAEEVHR 140
++ +E+ R
Sbjct: 556 ---ETELVQEIRR 565
Score = 42 (19.8 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK--HAMHRASLEQRRSKVT 60
TK G + R FG++ + ++A A+ N + + ++ V+ + S + SK +
Sbjct: 36 TKDG--KFRKFGFIGYKSEDEAQAALNHFNRSFIDTSRVTVELCKSFGDPSKPKAWSKHS 93
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSK 88
Q+V A +EK + + + A K
Sbjct: 94 QKVPA--LEKQPEKPMTIAAPASTKKDK 119
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 131 (51.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 54/184 (29%), Positives = 83/184 (45%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEE-LEQHGLAQEGCKMDASAVL 178
A+T +I L +M+ EE+ L SIG V S K + H G + V
Sbjct: 54 AKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTL--GHSLGYGFVN 111
Query: 179 YTTVKSACASVALLHQKEIKGGTV---WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKD 235
Y A ++ L+ ++ T+ +AR +G K L I +P ++D
Sbjct: 112 YVNPSDAERAINTLNGLRLQSKTIKVSYARP-SSDGIKDAN--LYISGLPKTMTQKNVED 168
Query: 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FG-KRPIAVDWA 293
MF+ G + N I + +GLS+G AF++F + +AE AI+ NG K G PI V +A
Sbjct: 169 MFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFA 228
Query: 294 VPKN 297
N
Sbjct: 229 ANPN 232
Score = 111 (44.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 26/86 (30%), Positives = 40/86 (46%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S + W + + N+ A + MF P G V NV + + +T KGF FV T +A
Sbjct: 281 SSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEA 340
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
AI NG + G + + V + K+
Sbjct: 341 AMAISSLNGYRLGDKVLQVSFKSSKS 366
Score = 99 (39.9 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 35/112 (31%), Positives = 50/112 (44%)
Query: 207 LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYI---------PHNTDTGLS 257
+G E S K LII +P E++ +FS +G V + + H+T G S
Sbjct: 47 MGDEPSDA-KTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHT-LGHS 104
Query: 258 KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
G+ FV + DAE AI NG + + I V +A P N+Y SG
Sbjct: 105 LGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISG 156
Score = 61 (26.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTSKCKGFGFV 332
Score = 61 (26.5 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46
G+G+V + DA RA+ NG + + I V +A
Sbjct: 106 GYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYA 140
Score = 61 (26.5 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I LP + + V+ F+ +G +++ ++ Q + +G F++F
Sbjct: 152 LYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRF 198
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 119 (46.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 37/145 (25%), Positives = 65/145 (44%)
Query: 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIR 222
Q G + + + + + A ++ +++EI+G + G GS ++Q K L ++
Sbjct: 518 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 577
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
+ +K+ F G V I + +TG SKGF FV F + DA++A + +
Sbjct: 578 GLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 634
Query: 283 FGKRPIAVDWAVPKNIYSSGGAAAG 307
+ +DWA PK GG G
Sbjct: 635 IDGNKVTLDWAKPKGEGGFGGRGGG 659
Score = 82 (33.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/97 (23%), Positives = 41/97 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V+K G + +G Y++F DA + E K GT + GR I + + + + R
Sbjct: 421 LVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKN 478
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVK 97
E KT+ + S E+ ++ E +K
Sbjct: 479 STWSGES--KTLVLSNLSYSATEETLQEVFEKATFIK 513
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK 58
R FGYV F ED +A+E+ G V G +I ++ + S ++R ++
Sbjct: 347 RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKERDAR 393
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 119 (46.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 37/145 (25%), Positives = 65/145 (44%)
Query: 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIR 222
Q G + + + + + A ++ +++EI+G + G GS ++Q K L ++
Sbjct: 519 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 578
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
+ +K+ F G V I + +TG SKGF FV F + DA++A + +
Sbjct: 579 GLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 635
Query: 283 FGKRPIAVDWAVPKNIYSSGGAAAG 307
+ +DWA PK GG G
Sbjct: 636 IDGNKVTLDWAKPKGEGGFGGRGGG 660
Score = 82 (33.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/97 (23%), Positives = 41/97 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V+K G + +G Y++F DA + E K GT + GR I + + + + R
Sbjct: 422 LVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKN 479
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVK 97
E KT+ + S E+ ++ E +K
Sbjct: 480 STWSGES--KTLVLSNLSYSATEETLQEVFEKATFIK 514
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK 58
R FGYV F ED +A+E+ G V G +I ++ + S ++R ++
Sbjct: 348 RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKERDAR 394
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 114 (45.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 94
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 154
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 210
Score = 112 (44.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 38 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 97
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 98 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 138
Score = 102 (41.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 297 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 356
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 357 SLNGYRLGDRVLQVSFKTNK 376
Score = 82 (33.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 180
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 132
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 133 -NLYVSGLPKTMTQKE 147
Score = 60 (26.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 343
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 119 (46.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 37/145 (25%), Positives = 65/145 (44%)
Query: 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIR 222
Q G + + + + + A ++ +++EI+G + G GS ++Q K L ++
Sbjct: 520 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 579
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
+ +K+ F G V I + +TG SKGF FV F + DA++A + +
Sbjct: 580 GLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 636
Query: 283 FGKRPIAVDWAVPKNIYSSGGAAAG 307
+ +DWA PK GG G
Sbjct: 637 IDGNKVTLDWAKPKGEGGFGGRGGG 661
Score = 82 (33.9 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 23/97 (23%), Positives = 41/97 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V+K G + +G Y++F DA + E K GT + GR I + + + + R
Sbjct: 423 LVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKN 480
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVK 97
E KT+ + S E+ ++ E +K
Sbjct: 481 STWSGES--KTLVLSNLSYSATEETLQEVFEKATFIK 515
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK 58
R FGYV F ED +A+E+ G V G +I ++ + S ++R ++
Sbjct: 349 RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGKDSKKERDAR 395
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 97 (39.2 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 185 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 243
Query: 279 NGQKFGKRPIAV---DWAVP 295
NGQ RP+ V D +VP
Sbjct: 244 NGQFLFDRPMHVKMDDKSVP 263
Score = 84 (34.6 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 464 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 510
Score = 59 (25.8 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 84 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 124
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMAEEVHR-LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M +E R L GSIG + S L ++++ G + V Y
Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 99
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 159
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 215
Score = 112 (44.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + K LI+ +P E + +F +G + + + + TG S G+ FV +
Sbjct: 43 GATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 102
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 103 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 143
Score = 102 (41.0 bits), Expect = 0.00022, Sum P(2) = 0.00021
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ + + + +F P G V NV + + +T KGF FV T +A AI
Sbjct: 302 WCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 361
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 362 SLNGYRLGDRVLQVSFKTNK 381
Score = 82 (33.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 185
Score = 64 (27.6 bits), Expect = 0.00022, Sum P(2) = 0.00021
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 82 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 137
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 138 -NLYVSGLPKTMTQKE 152
Score = 60 (26.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V+ V V+ T + KG GF+
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFG-AVNNVKVIRDFNTNKCKGFGFV 348
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 117 (46.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 37/140 (26%), Positives = 69/140 (49%)
Query: 154 PLPKEELEQHGLAQEGCKMDAS-AVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS 212
P P+++ +Q Q+ M++S A++Y ++ ++ L I G+ GG+
Sbjct: 323 PYPQQQQQQQQQQQQ--MMNSSGAMMYPFYQNM-PTMNSLPNSMI--GSSSQPPPGGKNP 377
Query: 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272
T L + N+P A + + +FSP G + +V I + T + +G+ FV+ D+
Sbjct: 378 GTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSY 437
Query: 273 SAIQKFNGQKFGKRPIAVDW 292
SAI NG + G + I+V +
Sbjct: 438 SAINSINGVQVGGKTISVSF 457
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L I +P + ++ +FS G + + + + +TGLS+GF FVKF A+ AI
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 279 NGQKFGKRPIAVDWA 293
NG K + + V +A
Sbjct: 161 NGAKVENKTLLVRFA 175
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 380 LVK-GNKEQDSDKTVNESAKVSDVXXXXXXXXXXXXXXQTEGEDE--LQNTIFICNLPFD 436
LV+ N + +S+ T N S +D T DE + N +FI LP +
Sbjct: 171 LVRFANSDPNSNNT-NNSNNNNDDDNNNNNNNNNSNNNNTNNIDEQKISNNVFIRGLPIE 229
Query: 437 LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
D ++ + FSA+GEVV ++ T +G G +++
Sbjct: 230 FDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRY 267
Score = 73 (30.8 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ IR +P + N++ ++FS G V + + T S+G V++ + A +A++
Sbjct: 221 VFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSL 280
Query: 279 NG--QKFGKRPIAVDWA 293
NG + ++P+ V +A
Sbjct: 281 NGFILQDPEKPLIVRFA 297
Score = 68 (29.0 bits), Expect = 0.00095, Sum P(3) = 0.00095
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLK 473
+++ NLP D D+ + + FS G + S V Q T+ +G GF++
Sbjct: 384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVR 429
Score = 62 (26.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46
RGFG+V+F + A A+ NG V + + V+ A
Sbjct: 140 RGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFA 175
Score = 41 (19.5 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 578 TRLVIYNLPKSMTEKGLKKLCIDA-VVSRASKQKPVIKQVCYLFSF 622
T L +YNLP + L +L ++ + QVC + F
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGF 427
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 99 (39.9 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 117 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 176
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 177 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 224
Score = 89 (36.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 241
Query: 67 DIEK 70
I +
Sbjct: 242 RITR 245
Score = 88 (36.0 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 244 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 301
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 302 TKAVTEMNGRIVATKPLYVALAQRK 326
Score = 75 (31.5 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 8 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 64
Query: 72 MDNK 75
+DNK
Sbjct: 65 IDNK 68
Score = 67 (28.6 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 295
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 117 (46.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 111 (44.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 109 (43.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 276 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 336 SLNGYRLGDRVLQVSFKTNK 355
Score = 82 (33.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 64 (27.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMTQKE 140
Score = 63 (27.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 322
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 117 (46.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ G + V Y
Sbjct: 37 SKTNLIDNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 87
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 111 (44.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 32/100 (32%), Positives = 47/100 (47%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E SKT LI +P E+K +F +G + + + + TG S G+ FV + +
Sbjct: 35 EDSKTN---LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 91
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
DAE AI NG + + I V +A P N+Y SG
Sbjct: 92 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 131
Score = 109 (43.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 276 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 336 SLNGYRLGDRVLQVSFKTNK 355
Score = 82 (33.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRF 173
Score = 64 (27.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + +DA +A+ NG + + I V +A R S R
Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA-- 125
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM K+
Sbjct: 126 -NLYVSGLPKTMTQKE 140
Score = 63 (27.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 322
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 99 (39.9 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 75 (31.5 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 150 (57.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 63/270 (23%), Positives = 118/270 (43%)
Query: 56 RSKVTQEVQAEDIEKTMDN-KDGVISGAEKHSSKLLESGKTVKPRKA--ATLGIDLADKE 112
+++ T + + E+ + D+ D SG++ + + KT P K A + K+
Sbjct: 170 KAEKTDKAKKEETDSDSDSDSDSDSSGSDSSDDEEEKPAKTEAPSKKRKAEEEEEAPAKK 229
Query: 113 DCSQKQRVARTVIIGGLL-NAD--MAEEVHRLAGSIGTVCSVT--------------YPL 155
+++ T+ +G L N D M E + G++ + +T +
Sbjct: 230 TKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFAT 289
Query: 156 PKEELEQHGLAQEGCKMDASAVL--YTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK 213
P+E + HG ++G +D + ++T K+ ++ A + + G TV S
Sbjct: 290 PEEAEKAHG-EKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTV------SPESD 342
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
T L + N+PF A + + FS V V ++ +P ++G KGF +V F DA+S
Sbjct: 343 T----LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 274 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGG 303
A ++ NGQ R +D++ P+ GG
Sbjct: 399 AFEQLNGQSINGRNCRLDYSTPRPPREDGG 428
Score = 92 (37.4 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRAS 51
++T + S +GFGYV FA E+A +A K G + GR+I V + +A+
Sbjct: 270 VITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKAT 320
Score = 87 (35.7 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+T+F+ NLPFD D + V FS EV S Q + R KG G++ F
Sbjct: 342 DTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTF 390
Score = 85 (35.0 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ + + + F G V + + + ++G SKGF +V F +AE A +
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAA 306
G R I VD++ K S+ A A
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSNDAAGA 328
Score = 55 (24.4 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 24/97 (24%), Positives = 40/97 (41%)
Query: 34 TSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE---DIEKTMDNKDGVISGAEKHSSKLL 90
+S +KI K +AS + ++ KV +++ D + + D EK +K
Sbjct: 29 SSAKSKKIA-KDVAVKASKKDKKKKVEVSSESDSDSDASDSSSDSDSESEVEEKKPTKAA 87
Query: 91 ESGKTVKPRKAATLGIDL-----ADKEDCSQKQRVAR 122
+GK K KA + D AD D S + A+
Sbjct: 88 TNGKAKKAAKAESSDSDSSSESEADSSDSSDSESDAK 124
Score = 46 (21.3 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 50 ASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLA 109
A E+ + V ++ A+ +EK+ ++ D ++ SS ES KP KA D A
Sbjct: 126 APKEKAATNVDKKAAAKKVEKS-ESSD-----SDSDSSDSDESDSDAKPAKAEKT--DKA 177
Query: 110 DKED 113
KE+
Sbjct: 178 KKEE 181
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 18/89 (20%), Positives = 37/89 (41%)
Query: 49 RASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLE-SGKTVKPRKAATLGID 107
+A+ + + VT+ Q + KD + ++K K +E S ++ A+ D
Sbjct: 12 KAAPAVKSAGVTKPSQTSSAKSKKIAKDVAVKASKKDKKKKVEVSSESDSDSDASDSSSD 71
Query: 108 LADKEDCSQKQRVARTVIIGGLLNADMAE 136
+D E ++++ + G A AE
Sbjct: 72 -SDSESEVEEKKPTKAATNGKAKKAAKAE 99
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 95 (38.5 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N ++K++F G ++
Sbjct: 162 LLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIR 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + D+G SKGF FV F DA+ A+ + NG++ + + V A K
Sbjct: 222 VMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK 269
Score = 88 (36.0 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA RAV+ NG + G+++ V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQD 286
Score = 88 (36.0 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 78 (32.5 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + GR + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 69 (29.3 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL LD+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 127 (49.8 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQDLMGQPISVDW 148
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 101 (40.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S+ Q L I+N+ +++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 191 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEA 248
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 249 TKAVTEMNGRIVGSKPLYVALAQRK 273
Score = 100 (40.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G+K +++ + I+N + +K++FS G +V
Sbjct: 64 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 123
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + + G SKGF FV + DA A+++ NG++ + I V A K
Sbjct: 124 VMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 171
Score = 97 (39.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + + + +GFG+V + EDAN+AVE NG + G+ I V A + + + +
Sbjct: 124 VMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFE 183
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 184 QLKQERISR 192
Score = 73 (30.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E++++ FS FG + S +L R KG GF+ F
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCF 242
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
N +G+ +V F E A++A+E NG + RK+ V R E
Sbjct: 37 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE 82
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 99 (39.9 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 99 (39.9 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 99 (39.9 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 99 (39.9 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 99 (39.9 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 109 (43.4 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 35/128 (27%), Positives = 60/128 (46%)
Query: 177 VLYTTVKSACASVA-----LLHQKEIKGGTVWA---RQLGGEGSKTQKWKLIIRNIPFKA 228
V Y T ++A A++ LL+ +E+ G + R+ E K + ++NI
Sbjct: 185 VHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNY 244
Query: 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288
+ +FSP G + ++Y+ + D G SKGF FV F A A+++ N ++ + I
Sbjct: 245 SEESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKI 303
Query: 289 AVDWAVPK 296
V A K
Sbjct: 304 YVGRAQKK 311
Score = 100 (40.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
+K Q L ++N+ ++++ F P G + + + + + G SKGF FV FT +A
Sbjct: 331 AKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEA 389
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
AI + N + +P+ V A K++ S
Sbjct: 390 TKAITEMNTRMINGKPLYVALAQRKDVRRS 419
Score = 83 (34.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEV 63
K + +GFG+V F E A +AVE N + G+KI V A + + K + V
Sbjct: 266 KDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAV 325
Query: 64 QAEDIEK 70
+ E + K
Sbjct: 326 RLEKLAK 332
Score = 70 (29.7 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+F+ NL +D+E++++ F FG + S ++ + K KG GF+ F
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS-KGFGFVCF 383
Score = 61 (26.5 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + G+ YV + ED +A+E N + GR + + S RRS + +
Sbjct: 89 SKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSA--RRSG-DGNIFIK 145
Query: 67 DIEKTMDNK 75
++ +DNK
Sbjct: 146 NLHPAIDNK 154
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 99 (39.9 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 96 (38.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
KL I+N+ ++++ FS G + V + + G SKGF + F+ DA A+ +
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ--EEGQSKGFGLICFSSPEDATKAMTE 409
Query: 278 FNGQKFGKRPIAV 290
NG+ G +P+++
Sbjct: 410 MNGRILGSKPLSI 422
Score = 90 (36.7 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 212 SKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
SK ++ + I+N +KD+FS G +V + ++ +G SKGF FV F
Sbjct: 242 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEA 300
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ A+++ NG+ + I V A K
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKK 326
Score = 87 (35.7 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V S + +GFG+V F E A +AVE NG + G+ I V A + + ++ +
Sbjct: 279 VMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFE 338
Query: 62 EVQAEDI 68
+++ E I
Sbjct: 339 QLKRERI 345
Score = 85 (35.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 42/177 (23%), Positives = 86/177 (48%)
Query: 110 DKE-DCSQKQRVARTVIIGGLLNADMAEEV-HRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167
DKE + + K R+A + G L+AD+ E++ R ++G V S+ + ++++ + L
Sbjct: 56 DKEMNVAAKYRMASLYV--GDLHADVTEDLLFRKFSTVGPVLSIR--ICRDQVTRRSLGY 111
Query: 168 EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV---WARQLGGEGSKTQKWKLIIRNI 224
+ V + + A ++ ++ IKG ++ W+ Q ++ + I+N+
Sbjct: 112 -------AYVNFLQLADAQKALDTMNFDIIKGKSIRLMWS-QRDAYLRRSGIGNVFIKNL 163
Query: 225 PFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281
+ + FS G + + + + D G SKG+AFV F + A+ AI++ NG+
Sbjct: 164 DKSIDNKTLYEHFSAFGKILSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGK 218
Score = 80 (33.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I N D+D+E +K FS +G+ +S V V+ + + KG GF+ F
Sbjct: 246 EFTN-VYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTDSSGKSKGFGFVSF 295
Score = 78 (32.5 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F + DA +A++ N + G+ I + + A L RRS + V ++++K+
Sbjct: 110 GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYL--RRSGIGN-VFIKNLDKS 166
Query: 72 MDNK 75
+DNK
Sbjct: 167 IDNK 170
Score = 67 (28.6 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E+++ FS+FG + S V V+ Q + KG G + F
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSFGSI-SRVKVM-QEEGQSKGFGLICF 397
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 97 (39.2 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 253 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 311
Query: 279 NGQKFGKRPIAV---DWAVP 295
NGQ RP+ V D +VP
Sbjct: 312 NGQFLFDRPMHVKMDDKSVP 331
Score = 84 (34.6 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 539 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 585
Score = 59 (25.8 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
K + RG G V+F E +A+E N + GR + +K
Sbjct: 152 KDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIK 192
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 103 (41.3 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ + +K++FS G++ + + T++ SKGF FV F+ +A
Sbjct: 289 NRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVM--TESSHSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 98 (39.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+MFSP+G + ++ + + T S G+A++ F DAE A+ N + +PI + W+
Sbjct: 29 EMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRIMWS 87
Score = 95 (38.5 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRAS----LEQRRS 57
V + + + RGFG++ F E+A +AV+ NG V G+ + V A RA L++R
Sbjct: 222 VMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFE 281
Query: 58 KVTQEVQ 64
++ QE Q
Sbjct: 282 QMKQERQ 288
Score = 87 (35.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 8 NEH--RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
NEH RGFG+V F E A +A+ NG + RK+ V H R E
Sbjct: 133 NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE 180
Score = 83 (34.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ ++N+ ++D+FS G +V + +++ G S+GF F+ F +A+ A+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHM 251
Query: 279 NGQK 282
NG++
Sbjct: 252 NGKE 255
Score = 74 (31.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
I++ NL D+D + ++ FS FG+ S V V+ + +G GF+ F
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQS-VKVMRDSNGQSRGFGFINF 238
>TAIR|locus:2080772 [details] [associations]
symbol:EIF3G1 "eukaryotic translation initiation factor
3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS;TAS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
KEGG:ath:AT3G11400 Uniprot:F4J6A1
Length = 321
Score = 145 (56.1 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
+ N+ + ++ ++F P G V VY+ + TG+S+GF FV F + DA+ AI K NG
Sbjct: 244 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 303
Query: 281 QKFGKRPIAVDWAVPK 296
+ + V+WA P+
Sbjct: 304 YGYDNLILRVEWATPR 319
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 97 (39.2 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +++KD+FS G ++
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIR 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + + G S+GF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKK 269
Score = 92 (37.4 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + D G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MDGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 86 (35.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
+ + RGFG+V F EDA RAV+ NG + G+ I V A + + + ++++ +
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQD 286
Score = 78 (32.5 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + GR + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 65 (27.9 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S ++ R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCF 340
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 112 (44.5 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 113 (44.8 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
+K Q L I+NI ++++++FS G + + + + SKGF FV +T +A
Sbjct: 279 TKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEA 338
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKNI 298
A+ + NG+ G +P+ V A K+I
Sbjct: 339 TRAVTEMNGRMIGTKPLYVALAQRKDI 365
Score = 103 (41.3 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 177 VLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFK-----AKVN 231
V Y T +SA ++A ++ I G V+ + Q ++ N+ FK +
Sbjct: 143 VHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPD 202
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288
++K++ G + N+ I + D G SKGF F F A++ ++ NG+ F +PI
Sbjct: 203 QLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPI 258
Score = 83 (34.3 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
+VT G N +GFG+V + E A++A+ NG + G+K+ V
Sbjct: 129 VVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFV 170
Score = 76 (31.8 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG-LSKGFAFVKFTCKRDAESAIQK 277
+ I+N+ + D FS G + + + TD G SKGF FV + + A+ AI K
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVV--TDDGNSSKGFGFVHYETQESADKAIAK 157
Query: 278 FNGQKFGKRPIAV 290
NG + + V
Sbjct: 158 VNGMMINGQKVFV 170
Score = 70 (29.7 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
++I N+ +DN+++++ FS FG + S + + KG GF+
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFV 330
Score = 62 (26.9 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 20/73 (27%), Positives = 37/73 (50%)
Query: 5 KGSNEHRG--FGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQE 62
+ +N R + YV + DA RA++ N T + G+ + + SL R+S V
Sbjct: 43 RDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSL--RKSGVGN- 99
Query: 63 VQAEDIEKTMDNK 75
V ++++K +D+K
Sbjct: 100 VFIKNLDKGIDHK 112
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 143 (55.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 39 (18.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 125 (49.1 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 20 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 79
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I
Sbjct: 80 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 129
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 98 (39.6 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 211 GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
G++ +++ + I+N +KD+F G +V + + ++G SKGF FV F
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK 296
DA+ A+ + NG++ + I V A K
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 83 (34.3 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ FSP G + ++ I + T S +A+V F +DAE A+ N +P+ + W+
Sbjct: 29 EKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWS 87
Score = 78 (32.5 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I N D+D+E +K F FG +S V V+ + + KG GF+ F
Sbjct: 189 EFPN-VYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTDESGKSKGFGFVSF 238
Score = 66 (28.3 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
Score = 65 (27.9 bits), Expect = 4.8e-07, Sum P(3) = 4.8e-07
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++T SN + YV F +DA A++ N + G+ + + + SL R+S V
Sbjct: 46 LITSGSSN----YAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVG 99
Query: 61 QEVQAEDIEKTMDNK 75
+ ++++K+++NK
Sbjct: 100 N-IFVKNLDKSINNK 113
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 150 (57.9 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 77/326 (23%), Positives = 139/326 (42%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK----- 58
+ G+N R FGYV F ED +A+E+ G V G +I ++ R S + R ++
Sbjct: 344 RTGTN--RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK 400
Query: 59 -----VTQEVQAEDIEKTMD----NKDGVISGAEKHSSKL-LESGKTVKPRKAATL-GID 107
+T++ E E M+ ++DG G K ++ K ++ ++ A + G
Sbjct: 401 NLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 460
Query: 108 LADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167
++ + QR RT G + E + ++ S T +E E+ +
Sbjct: 461 VSLYYTGEKGQRQERT----GKTSTWSGESKTLVLSNLSY--SATKETLEEVFEKATFIK 514
Query: 168 -----EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWK-LII 221
G + + + + + A ++ ++ EI+G T+ +L G S++Q K L +
Sbjct: 515 VPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTI-RLELQGSNSRSQPSKTLFV 573
Query: 222 RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281
+ + +K+ F G V I + +TG SKGF FV F + DA++A +
Sbjct: 574 KGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 630
Query: 282 KFGKRPIAVDWAVPKNIYSSGGAAAG 307
+ + +DWA PK GG G
Sbjct: 631 EIDGNKVTLDWAKPKGEGGFGGRGGG 656
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 143 (55.4 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 39 (18.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 143 (55.4 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 45 (20.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 247
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 180 PKSTQENNTKQLRFEDVVNQSS 201
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 112 (44.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 143 (55.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 59 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176
Score = 45 (20.9 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 206 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 247
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 180 PKSTQENNTKQLRFEDVVNQSS 201
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ I N+ + + D FS G++ I + DTG SKG+AF+ F +++AI+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG---GAAA 306
NGQ RPI V +A K+ S G G+AA
Sbjct: 162 MNGQYLCNRPITVSYAFKKD--SKGERHGSAA 191
Score = 97 (39.2 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 229 KVNE--IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
KV+E + ++F G V N ++P + TG +G+ FV+F + DA+ AI+ N K +
Sbjct: 23 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82
Query: 287 PIAVDWAVPKNIYSSGGAAAGVQN 310
PI V+ A N GA + N
Sbjct: 83 PIRVNKASAHNKNLDVGANIFIGN 106
Score = 80 (33.2 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV-KHAMHRASLE 53
+ +H+G+G+V+F EDA+ A+++ N + G+ I V K + H +L+
Sbjct: 50 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLD 97
Score = 64 (27.6 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKF 474
IFI NL ++D + + FSAFG ++ ++ T KG F+ F
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 143 (55.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 75 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 134
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 135 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 192
Score = 45 (20.9 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 222 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 263
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 196 PKSTQENNTKQLRFEDVVNQSS 217
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 143 (55.4 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSS 218
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 143 (55.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 40 (19.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSS 218
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 143 (55.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 40 (19.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 197 PKSTQENNTKQLRFEDVVNQSS 218
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 143 (55.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 39 (18.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 143 (55.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + +IK F+
Sbjct: 76 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
Score = 45 (20.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L ++ ++Q FS FG+++ + V + KG F++F
Sbjct: 223 TVYCGGIASGLTDQLMRQTFSPFGQIME-IRVFPE-----KGYSFVRF 264
Score = 39 (18.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L + VV+++S
Sbjct: 197 PKSTQETNTKQLRFEDVVNQSS 218
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 124 (48.7 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 208 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
G + W + + NI +A +++ D FS G + N+++ + TG KG+A V++
Sbjct: 46 GAPQRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYET 105
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSG 302
+++A AI + N + + VDW K +SG
Sbjct: 106 QKEANEAIDQSNDTDLLGQNVKVDWCFVKGKKTSG 140
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 140 (54.3 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 117 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 167
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 168 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 226
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 287 PIAVDWAV-----PKNIYSS 301
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 48 (22.0 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VVS++S
Sbjct: 189 PKSTYESNTKQLSYDEVVSQSS 210
Score = 41 (19.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 140 (54.3 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 183 KSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK-WKLIIRNIPFKAKVNEIKDMFS 238
+ A A++A ++ ++I G V WA + T + + + ++ + ++I+ F+
Sbjct: 77 RDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFA 136
Query: 239 PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
P G + + + + TG SKG+ FV F K DAE+AI GQ G R I +WA K
Sbjct: 137 PFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 194
Score = 48 (22.0 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 586 PKSMTEKGLKKLCIDAVVSRASKQ 609
PKS+ + K+L D VV+++S Q
Sbjct: 198 PKSVQDNSAKQLRFDEVVNQSSPQ 221
Score = 45 (20.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 425 QN-TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
QN T++ + L ++Q FS FG+++ + V + KG F++F
Sbjct: 221 QNCTVYCGGIQSGLTEHLMRQTFSPFGQIME-IRVFPE-----KGYSFIRF 265
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 137 (53.3 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 49/190 (25%), Positives = 84/190 (44%)
Query: 117 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 167
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 168 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 226
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 287 PIAVDWAVPK 296
I +WA K
Sbjct: 176 QIRTNWATRK 185
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 122 (48.0 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 28/93 (30%), Positives = 53/93 (56%)
Query: 206 QLGGEGSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264
++G + +K + KL ++NI F+A E++ +FSP G + ++ +P + G G+AFV+
Sbjct: 690 KVGKDSNKDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKK-NIGQYAGYAFVE 748
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
F K++A +A + F R + ++WA N
Sbjct: 749 FVTKQEALNAKKALASTHFYGRHLVLEWANDDN 781
Score = 101 (40.6 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
++ ++N+P K ++++D FS G + + + + D G S+ F F+ F ++A+ AI+
Sbjct: 3 RICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSND-GKSRQFGFIGFRSAQEAQQAIKY 61
Query: 278 FNGQKFGKRPIAVDWA 293
FN G I V+ A
Sbjct: 62 FNNTYLGTSLIIVEIA 77
Score = 89 (36.4 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 422 DELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
D++ +T +F+ NLP+ EE+ + FS FG++ VL + TKR +G ++ +
Sbjct: 288 DDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 342
Score = 85 (35.0 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G+ K L+++N+PF + E+ MF G + + +P +K A F
Sbjct: 480 GDEKNRSKHILLVKNLPFASTEKELAQMFGKFGSLDKIILPP------TKTMALAVFLEP 533
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298
+A +A++ +++ P+ ++WA P NI
Sbjct: 534 AEARAALKGMAYKRYKDAPLYLEWA-PGNI 562
Score = 77 (32.2 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 28/131 (21%), Positives = 56/131 (42%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + RG Y+ + + E A RA+E + +S GR + + A HR + +++ + +
Sbjct: 325 LVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTS 384
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGI---DLADKE--DCS 115
+ ++ K G K + L T+ G+ +L D+E D +
Sbjct: 385 NLPKTFKQKREEQRKASEAGGDTKAWNSLFMRPDTILENIVRVYGVSKSELLDREAEDPA 444
Query: 116 QKQRVARTVII 126
+ + T +I
Sbjct: 445 VRLALGETKVI 455
Score = 69 (29.3 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 21/90 (23%), Positives = 45/90 (50%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRR---SKVT 60
+ + R FG++ F ++A +A++ N T +G I V+ A H+ E S+++
Sbjct: 35 RSNDGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIA-HKVGDENAPRPWSRLS 93
Query: 61 QEVQAEDIEKTMDN-KDGVISGAEKHSSKL 89
+ + E + + + KDG G +K +++
Sbjct: 94 HKKEEEAKKSSSEGLKDGNAKGGKKRKAEV 123
Score = 54 (24.1 bits), Expect = 0.00029, Sum P(3) = 0.00029
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454
+D+ + + N+ F+ E++Q FS FG++ S
Sbjct: 697 KDKPCTKLHVKNIAFEATKRELRQLFSPFGQIKS 730
Score = 47 (21.6 bits), Expect = 0.00064, Sum P(3) = 0.00064
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 28 VEMKNGTSVGGRKIGVK-HAMHRASLEQRRSKVTQEVQAEDI--EKTMDNKDGVISGAEK 84
+E KN + ++ + + R +LEQ+ ++ +V ++ K + K G +K
Sbjct: 563 LEPKNLPDTNEERSDIEENGVRRVNLEQQ-VEIDPDVTESNVLNVKNLSFKT-TDEGLKK 620
Query: 85 HSSKLLESGK 94
H +KL++ GK
Sbjct: 621 HFTKLVKQGK 630
Score = 46 (21.3 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRAS 51
G+G+V+F +E A GT + G + ++ ++ S
Sbjct: 649 GYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRS 688
Score = 41 (19.5 bits), Expect = 7.0e-07, Sum P(3) = 7.0e-07
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 346 SNADFDEEVDIARK 359
S A FDEE D ARK
Sbjct: 790 SAAKFDEENDNARK 803
Score = 40 (19.1 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 576 SRTRLVIYNLPKSMTEKGLKKL 597
S+ L++ NLP + TEK L ++
Sbjct: 486 SKHILLVKNLPFASTEKELAQM 507
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 121 (47.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 46/176 (26%), Positives = 80/176 (45%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE+ L GSIG + S L ++++ EG + V Y
Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCK--LVRDKIT------EGQSLGYGFVNY 115
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
K A ++ L+ ++ T+ + + L + +P E++ +FS
Sbjct: 116 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 175
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIAVDWA 293
G + I + TG+S+G F++F + +AE AI+ NGQK PI V +A
Sbjct: 176 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFA 231
Score = 110 (43.8 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ A + + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 306 WCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 365
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 366 SLNGYRLGDRVLQVSFKTSK 385
Score = 108 (43.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 32/101 (31%), Positives = 48/101 (47%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCK 268
E SKT LI+ +P E+K +F +G + + + + T G S G+ FV +
Sbjct: 62 EDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDP 118
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
+DAE AI NG + + I V +A P N+Y SG
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSG 159
Score = 82 (33.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ LP + +E++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF 201
Score = 63 (27.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IF+ NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 352
Score = 59 (25.8 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+G+V + +DA +A+ NG + + I V +A R S R + + KT
Sbjct: 109 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RPSSASIRDA---NLYVSGLPKT 163
Query: 72 MDNKD 76
M K+
Sbjct: 164 MTQKE 168
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 146 (56.5 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 42/134 (31%), Positives = 64/134 (47%)
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSK--TQKWKLIIRNIPFKAKVNEIKDMF 237
TT +A + L +KEIK WA G + + + + ++ + + +++ F
Sbjct: 59 TTALTAM-NKRLFLEKEIKVN--WATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF 115
Query: 238 SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV--- 294
+P G + N I + T SKG+AFV F K +AE+AIQ NGQ G R I +W+
Sbjct: 116 APFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKL 175
Query: 295 -PKNIYSSGGAAAG 307
P S GG G
Sbjct: 176 PPPREPSKGGGQGG 189
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 139 (54.0 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 42/149 (28%), Positives = 68/149 (45%)
Query: 159 ELEQHGLAQEG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKW 217
E +H A M+ ++ VK A+ +K+ TV + Q + +
Sbjct: 48 EFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HF 102
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+ + ++ + +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 278 FNGQKFGKRPIAVDWAV-----PKNIYSS 301
GQ G R I +WA PK+ Y S
Sbjct: 163 MGGQWLGGRQIRTNWATRKPPAPKSTYES 191
Score = 48 (22.0 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VVS++S
Sbjct: 185 PKSTYESNTKQLSYDEVVSQSS 206
Score = 42 (19.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 211 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFIRF 252
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 123 (48.4 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W +II NI +A+ + IK++F G + N+++ + TG KG+AF+++ DA+ AI
Sbjct: 23 WIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAID 82
Query: 277 KFNGQKFGKRPIAVDWA 293
+ +G + I VDWA
Sbjct: 83 EMDGTMLLNQEIHVDWA 99
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 123 (48.4 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W +II NI +A+ + IK++F G + N+++ + TG KG+AF+++ DA+ AI
Sbjct: 23 WIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAID 82
Query: 277 KFNGQKFGKRPIAVDWA 293
+ +G + I VDWA
Sbjct: 83 EMDGTMLLNQEIHVDWA 99
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ +++ FSP G++ + + T+ G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 96 (38.9 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 211 GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
G++ ++ + ++N+ ++D+FS G + +V + + D+G S+GF FV F
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHE 242
Query: 270 DAESAIQKFNGQKFGKRPIAV 290
+A+ A+ NG++ R + V
Sbjct: 243 EAQKAVVNMNGREVSGRLLYV 263
Score = 89 (36.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S RGFG+V F E+A +AV NG V GR + V A R + + +
Sbjct: 222 VMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFE 281
Query: 62 EVQAEDIEK 70
+++ + + +
Sbjct: 282 QMKQDRLTR 290
Score = 80 (33.2 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 8 NEH--RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
+EH RGFG+V F E A A+ NG + RK+ V H R E
Sbjct: 133 DEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRERE 180
Score = 61 (26.5 bits), Expect = 7.9e-07, Sum P(3) = 7.9e-07
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E++++ FS +G V++ V+ + KG GF+ F
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYG-VITSAKVMTE-GGHSKGFGFVCF 340
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 116 (45.9 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275
K LII +P E++ +F+ +G + + + + TG S G+ FV + + DA A+
Sbjct: 41 KTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAV 100
Query: 276 QKFNGQKFGKRPIAVDWAVPKN 297
FNG + + I V +A P N
Sbjct: 101 SSFNGLRLQNKTIKVSYARPSN 122
Score = 111 (44.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 41/157 (26%), Positives = 69/157 (43%)
Query: 124 VIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 183
+II L EEV L SIG + S L ++++ G + V Y +
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCK--LVRDKVT-------GQSLGYGFVNYVREE 94
Query: 184 SACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV 243
A +V+ + ++ T+ + + L + IP ++E++ +F P G +
Sbjct: 95 DALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQI 154
Query: 244 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
I + TGLSKG FV+F K +A+ AI+ NG
Sbjct: 155 ITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 75 (31.5 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
+F+ NL D D+ + Q FS FG +V+ V +L +T++ KG F+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVN-VKILRDLTQQCKGYAFV 419
Score = 69 (29.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 422 DELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
D+++ + +++ +P + E++ F FG++++ + VT KG GF++F
Sbjct: 123 DQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRF 176
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 102 (41.0 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ +++ F+P G++ + + T+ G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRK 371
Score = 96 (38.9 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ ++N+ ++D+FS G + +V + + D+G S+GF FV F DA+ A+
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 279 NGQKFGKRPIAV 290
NG++ R + V
Sbjct: 252 NGKEVSGRLLYV 263
Score = 93 (37.8 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S RGFG+V F EDA +AV NG V GR + V A R + + +
Sbjct: 222 VMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFE 281
Query: 62 EVQAEDIEK 70
+++ + + +
Sbjct: 282 QMKQDRLTR 290
Score = 77 (32.2 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
RGFG+V F E A A+ NG + RK+ V H R E
Sbjct: 138 RGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRRERE 180
Score = 57 (25.1 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E++++ F+ +G + S V+ + KG GF+ F
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITS-AKVMTE-GGHSKGFGFVCF 340
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 95 (38.5 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 29/109 (26%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +K++F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 95 (38.5 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 29/109 (26%), Positives = 56/109 (51%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +K++F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + ++G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 222 VMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 89 (36.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 286
Query: 67 DIEK 70
I +
Sbjct: 287 RITR 290
Score = 88 (36.0 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 67 (28.6 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 122 (48.0 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 28/96 (29%), Positives = 50/96 (52%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + +I +A+ +EI++ F G + N+++ + TG SKG+A V++
Sbjct: 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDWAV---PKNIYSS 301
+ A +A + NG + + I VDW PK + S
Sbjct: 125 KQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKS 160
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 122 (48.0 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A +
Sbjct: 3 SEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 274 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQ 309
A++ NG+ R I VD A S GGA G +
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGYE 98
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 122 (48.0 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 122 (48.0 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 122 (48.0 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
KL I + F + + FS G V I + + SKGF FV F +A+ A+ +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGG 303
FNGQ+ R I VD+A K GG
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGG 120
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 147 (56.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 80/329 (24%), Positives = 140/329 (42%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK----- 58
+ G+N R FGYV F ED +A+E+ G V G +I ++ R S + R ++
Sbjct: 343 RTGTN--RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK 399
Query: 59 -----VTQEVQAEDIEKTMD----NKDGVISGAEKHSSKL-LESGKTVKPRKAATL-GID 107
+T++ E E ++ ++DG G K ++ K ++ ++ A + G
Sbjct: 400 NLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 459
Query: 108 LADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLA- 166
++ + QR RT G N+ + E L S S T +E E+
Sbjct: 460 VSLYYTGEKGQRQERT----GK-NSTWSGESKTLVLS-NLSYSATEETLQEVFEKATFIK 513
Query: 167 ----QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK- 218
Q+G + + + + + A ++ ++ EI+G T+ G GS ++Q K
Sbjct: 514 VPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKT 573
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L ++ + +K+ F G V I + +TG SKGF FV F + DA++A +
Sbjct: 574 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
+ + +DWA PK GG G
Sbjct: 631 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 659
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 97 (39.2 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 30/109 (27%), Positives = 54/109 (49%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +K+MF G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + D G SKGF FV F DA+ A+ + NG+ + + V A K
Sbjct: 222 VMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
Score = 78 (32.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + GR + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 61 (26.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ F FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 100 (40.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 8 NEH--RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE-QRRSKVTQ--E 62
+EH RG+G+V F E ANRA++ NG + RK+ V H R E + +KV +
Sbjct: 133 DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN 192
Query: 63 VQAEDIEKTMDNK 75
V ++ + MD+K
Sbjct: 193 VYIKNFGEDMDDK 205
Score = 94 (38.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ + ++ FSP G + + + T+ G SKGF FV F+ +A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 91 (37.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEK 70
RGFG+V + E+A +AV NG V GR I V A R + + ++++ E I +
Sbjct: 231 RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINR 290
Score = 90 (36.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ FSP G + ++ + + T S G+A++ F DAE A+ N + RPI + W+
Sbjct: 29 EKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS 87
Score = 82 (33.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I N D+D++ +++ FSAFG +S V V+ T R +G GF+ +
Sbjct: 189 EFTN-VYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMDDTGRSRGFGFVNY 238
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 68 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 127
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ +PI+VDW
Sbjct: 128 KEAQAAMEGLNGQDLMGQPISVDW 151
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 127 (49.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A +I D F+ G + N+++ + TG KG+ V++
Sbjct: 68 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 127
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ +PI+VDW
Sbjct: 128 KEAQAAMEGLNGQDLMGQPISVDW 151
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 140 (54.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 117 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 167
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 168 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 226
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 287 PIAVDWAV-----PKNIYSS 301
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VV+++S
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSS 210
Score = 41 (19.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 140 (54.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 117 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 167
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 168 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 226
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 287 PIAVDWAV-----PKNIYSS 301
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VV+++S
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSS 210
Score = 41 (19.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 121 (47.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W +I NI +A ++ D+F+ G + N + + TG KG+A ++++ +A AI+
Sbjct: 42 WIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEAAEAIK 101
Query: 277 KFNGQKFGKRPIAVDWAV----PKNIYSSGGAAA-GVQNK 311
+ NG K + I VD+A P N SGG G +N+
Sbjct: 102 ELNGTKLLDQTIEVDYAFVRPPPSNKGKSGGRGGRGGRNR 141
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 138 (53.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
+ N+P + +E++D+F +G V ++I + TGL KGFAFV F + DA AI + N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 281 QKFGKRPIAVDWAVPKN 297
+ + V+W P N
Sbjct: 240 IRMYHMVLKVEWTRPSN 256
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 106 (42.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDA 271
K + +L + NIP + ++ DMF P G V +V + N TG S+G +V A
Sbjct: 104 KPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSA 163
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
+ AI +G + G R + V ++V N
Sbjct: 164 KIAIASLDGTEVGGREMRVRYSVDMN 189
Score = 104 (41.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 22/80 (27%), Positives = 46/80 (57%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
K+ + N+P+ + + +++ FS G + + + H+ TG ++ FAF+ FT + ++A+
Sbjct: 214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS- 272
Query: 278 FNGQKFGKRPIAVDWAVPKN 297
FNG ++ R I V + K+
Sbjct: 273 FNGTQYEGRRIIVREGIEKS 292
Score = 76 (31.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAM 47
+ E RG GYV + A A+ +GT VGGR++ V++++
Sbjct: 146 TGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSV 186
Score = 74 (31.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLKF 474
E Q+ +++ NLP+ + ++ FS FG +VS VLH + T R + FL F
Sbjct: 210 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVS-TRVLHDRKTGRNRVFAFLSF 261
Score = 40 (19.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 59 VTQEVQAEDIEK--TMDNKDGVISGAE 83
V E + E++ K NKD V+S AE
Sbjct: 74 VLDEEKEEEVVKGEAEPNKDSVVSKAE 100
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 139 (54.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 65/252 (25%), Positives = 109/252 (43%)
Query: 56 RSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGK-TVKPRKAATLGIDLADKEDC 114
+ K Q+ AE EK D + GA + E K T AA+ ++ ++E+
Sbjct: 669 QKKEPQDTPAELTEK--DRMEPETGGAPMPGGETPEVEKPTEGGADAASAKVEEEEEEEE 726
Query: 115 SQKQRVARTVIIGGLLNADMAEEVHR-LAGSIGTV--CSVTYPLPKE-ELEQHGLAQEGC 170
+++ + + LN EE + + +G V CS++ K L G
Sbjct: 727 EEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEY 786
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIK---GGTVWARQLGGEGSKTQKW---KLIIRNI 224
K A +K V H+ E++ T A + +K K+++RNI
Sbjct: 787 KKPEQA--QKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNI 844
Query: 225 PFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF--NGQ 281
PF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A +
Sbjct: 845 PFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNALCHSTH 904
Query: 282 KFGKRPIAVDWA 293
+G+R + ++WA
Sbjct: 905 LYGRR-LVLEWA 915
Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 30/98 (30%), Positives = 47/98 (47%)
Query: 198 KGGT-VW-ARQLGG---EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252
K T W R LG E +L +RN+P+ + +++ +FS G + ++ P ++
Sbjct: 379 KNSTKAWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDS 438
Query: 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290
T KGFAFV F A A + +GQ F R + V
Sbjct: 439 LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 476
Score = 83 (34.3 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q E SKT ++ +N+P + E+++ F G + V +P G++ A V+F
Sbjct: 580 QAAAERSKTV---ILAKNLPAGTQAAELQETFGRFGSLGRVLLPEG---GVT---AIVEF 630
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
+A A + KF P+ ++WA P ++SS
Sbjct: 631 LEALEARKAFRHLAYSKFHHVPLYLEWA-PMGVFSS 665
Score = 80 (33.2 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
I + N+PF D+ E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 839 ILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 886
Score = 63 (27.2 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 29/130 (22%), Positives = 52/130 (40%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEK 70
+GF +V F E A +A +G GR + H + +++++ S+ T + +K
Sbjct: 444 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRML---HVLP-STIKKEASEDTDTPGSSSYKK 499
Query: 71 TMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLL 130
++KD S + + + L V A + D K VA V +G
Sbjct: 500 KKESKDKASSSSSHNWNTLFMGPNAVADAIAQKYNSTKSQVFDHETKGSVAVRVALG--- 556
Query: 131 NADMAEEVHR 140
+ +EV R
Sbjct: 557 ETQLVQEVRR 566
Score = 57 (25.1 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQE 62
TK G + R FG++ F E+A A+ N + + +I V+ + R+
Sbjct: 36 TKDG--KFRKFGFIGFKSEEEAQTALNHFNKSFIDTSRITVEFCKSFGDPTKPRAWSKHA 93
Query: 63 VQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRK 100
+ + +KD V A+K + K +G+ K +K
Sbjct: 94 QKPSQSKPPPKDKDSVPPEAKKDNRKKKVAGELEKLKK 131
Score = 55 (24.4 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 417 QTEGEDELQN-TIFICNLPFDLDNEEVKQRFSAFGEVVS 454
+ E E+ L T+FI NL F E +K FS G V S
Sbjct: 725 EEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKS 763
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 131 (51.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+P+ + D+F+ +G V I + TG SKGF V+F + DA S+I+K
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 279 NGQKFGKRPIAVDWA 293
NG ++G RP+ + +A
Sbjct: 371 NGYRYGGRPLQLSYA 385
Score = 105 (42.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 209 GEGSK--TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266
G G K Q+ ++ + N+ ++ + E+K+ VG V N I N GLSKG A ++++
Sbjct: 67 GNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 125
Query: 267 CKRDAESAIQKFNGQKFGKRPIAV 290
+A +AI+ + QKF R + +
Sbjct: 126 TAEEARTAIKTLSNQKFMGRLVYI 149
Score = 59 (25.8 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
I++ NLP+ + + F+ G V+ + ++ T R KG G ++F
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIR-ARIAYEPTGRSKGFGVVQF 357
Score = 57 (25.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
RG G V + M++A A++M + T GR + V+
Sbjct: 219 RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 252
Score = 51 (23.0 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWAR 205
QEG V+ +++K A ++ +LH + G T+ R
Sbjct: 214 QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 252
Score = 38 (18.4 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
+G ++++ E+A A++ + GR + ++
Sbjct: 117 KGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIR 150
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 109 (43.4 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 205 RQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264
RQ + K + ++NI + +E + +F G V + + + +TG S+GF FV
Sbjct: 230 RQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVN 289
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
FT DA A+Q+ N ++F + + V A K+
Sbjct: 290 FTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322
Score = 66 (28.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + + +G+G+V + E A++A++ NG + +K+ V H + + + R+SK
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK---KDRQSKF-D 235
Query: 62 EVQA 65
E++A
Sbjct: 236 EMKA 239
Score = 62 (26.9 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTK 464
++I NL ++D+E+++Q FS FG + S + +T+
Sbjct: 348 LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITE 384
Score = 57 (25.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV + D +A+E N T + GR + + +L R V ++++
Sbjct: 103 GYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPAL---RKTGQGNVFIKNLDVA 159
Query: 72 MDNK 75
+DNK
Sbjct: 160 IDNK 163
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 105 (42.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ +++ FSP G++ + + T+ G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G +P+ V A K
Sbjct: 347 TKAVTEMNGRILGTKPLYVALAQRK 371
Score = 94 (38.1 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 211 GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
G++ ++ + ++N+ ++D+FS G + +V + + D+G S+GF FV F
Sbjct: 184 GARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHE 242
Query: 270 DAESAIQKFNGQKFGKRPIAV 290
+A+ A+ NG++ R + V
Sbjct: 243 EAQKAVMDMNGKEVSGRLLYV 263
Score = 88 (36.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V + S RGFG+V F E+A +AV NG V GR + V A R + + +
Sbjct: 222 VMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFE 281
Query: 62 EVQAEDIEK 70
+++ + + +
Sbjct: 282 QLKQDRLTR 290
Score = 77 (32.2 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
RGFG+V F E A +A+ NG + RK+ V H R E
Sbjct: 138 RGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRRERE 180
Score = 61 (26.5 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E++++ FS +G V++ V+ + KG GF+ F
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYG-VITSAKVMTE-GGHSKGFGFVCF 340
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 274 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
A++ NG+ R I VD A S GGA G
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGG 96
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 121 (47.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 41/163 (25%), Positives = 75/163 (46%)
Query: 121 ARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M++ E+ L SIG V S L ++++ H L V Y
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY-------GFVNY 82
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
A +++ L+ ++ T+ + L I +P ++++MF
Sbjct: 83 LNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGR 142
Query: 240 VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
G + N + + +GLS+G AF++F + +AE AI+ NGQK
Sbjct: 143 YGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQK 185
Score = 115 (45.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
G+ + W + I N+ A + MF P G V NV + + +T KGF FV T +
Sbjct: 252 GNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEE 311
Query: 271 AESAIQKFNGQKFGKRPIAVDWAVPKN 297
A AI NG + G + + V + K+
Sbjct: 312 AAMAIASLNGYRLGDKILQVSFKTSKS 338
Score = 111 (44.1 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275
K LI+ +P +E++ +FS +G V + + + G S G+ FV + DAE AI
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 276 QKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
NG + + I V +A P N+Y SG
Sbjct: 93 STLNGLRLQSKTIKVSYARPSSDSIKDANLYISG 126
Score = 69 (29.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + DA RA+ NG + + I V +A R S + +
Sbjct: 65 LIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYA--RPSSDSIKDA-- 120
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM KD
Sbjct: 121 -NLYISGLPKTMTQKD 135
Score = 66 (28.3 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 422 DELQNT-IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
D +++ ++I LP + ++V++ F +G +++ ++ Q + +G F++F
Sbjct: 115 DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRF 168
Score = 62 (26.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFL 472
IFI NL D D + Q F FG V + V V+ T + KG GF+
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTN-VKVIRDFNTNKCKGFGFV 304
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 112 (44.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 29/94 (30%), Positives = 43/94 (45%)
Query: 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275
K LI+ +P E K +F +G + + + + TG S G+ FV + DA+ AI
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 276 QKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
NG K + I V +A P N+Y SG
Sbjct: 97 NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSG 130
Score = 108 (43.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + + N+ +A + + +F P G V NV + + T KGF FV T +A AI
Sbjct: 276 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 335
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G R + V + K
Sbjct: 336 SLNGYRLGDRVLQVSFKTSK 355
Score = 108 (43.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 42/177 (23%), Positives = 79/177 (44%)
Query: 121 ARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
++T +I L +M EE L GSIG + S L ++++ G + V Y
Sbjct: 36 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCK--LVRDKIT-------GQSLGYGFVNY 86
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP 239
A ++ L+ +++ T+ + + L + +P +++ +FS
Sbjct: 87 VDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQ 146
Query: 240 VG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGK-RPIAVDWA 293
G ++ + + G+S+G F++F + +AE AI+ NGQK G PI V +A
Sbjct: 147 YGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFA 203
Score = 73 (30.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR-PKGTGFLKF 474
+++ LP + ++++Q FS +G +++ ++ QVT +G GF++F
Sbjct: 126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRF 173
Score = 71 (30.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + + G+G+V + DA++A+ NG + + I V +A R S R
Sbjct: 69 LVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA--RPSSASIRDA-- 124
Query: 61 QEVQAEDIEKTMDNKD 76
+ + KTM KD
Sbjct: 125 -NLYVSGLPKTMSQKD 139
Score = 61 (26.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IF+ NL + D + Q F FG V + + T + KG GF+
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 322
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 146 (56.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 65/252 (25%), Positives = 106/252 (42%)
Query: 56 RSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCS 115
+ K Q+ +E +EK + V G E G K + ++E+
Sbjct: 668 QKKKLQDTPSEPMEKDPAEPETVPDGETPEDENPTEEGADNSSAKME----EEEEEEEEE 723
Query: 116 QKQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTYPLPKEE-LEQHGLAQEGCK 171
++ T+ I L N D EE + + +GTV CS++ K L G +
Sbjct: 724 EESLPGCTLFIKNL-NFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYR 782
Query: 172 MDASAVLYTTVKSACASVALLHQKEI-------KGGTVWARQLGGEGSKTQKWKLIIRNI 224
A +K V H+ E+ K AR+ +T K+++RNI
Sbjct: 783 KPEQA--QKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTS-KILVRNI 839
Query: 225 PFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF--NGQ 281
PF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A +
Sbjct: 840 PFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTH 899
Query: 282 KFGKRPIAVDWA 293
+G+R + ++WA
Sbjct: 900 LYGRR-LVLEWA 910
Score = 109 (43.4 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 29/109 (26%), Positives = 53/109 (48%)
Query: 203 WARQLGGEGSK----TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSK 258
W ++ GE + + +L +RN+P+ + +++ +FS G + ++ P ++ T K
Sbjct: 384 WQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPK 443
Query: 259 GFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
GFAF+ F A A + +GQ F R + V + K S +A G
Sbjct: 444 GFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALG 492
Score = 73 (30.8 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
I + N+PF + E+++ FS FGE+ + +P T +G GF+ F
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDF 881
Score = 67 (28.6 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 417 QTEGEDELQN-TIFICNLPFDLDNEEVKQRFSAFGEVVS 454
+ E E+ L T+FI NL FD E++K+ FS G V S
Sbjct: 720 EEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Score = 47 (21.6 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 44/200 (22%), Positives = 80/200 (40%)
Query: 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQE 62
TK G + R FG++ F E+A +A + N + + +I V+ + R+ ++
Sbjct: 36 TKDG--KFRKFGFIGFKSEEEAQKAQKHFNKSFIDTSRITVEFCKSFGDPAKPRAW-SKH 92
Query: 63 VQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVAR 122
Q K KD +K K +G+ K ++ D +E S QR A+
Sbjct: 93 AQKPSQPK-QPPKDSTTPEIKKDEKKKKVAGQLEKLKE------DTEFQEFLSVHQRRAQ 145
Query: 123 TVI-IGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTT 181
L+A+ ++ + A S + +E E+ G A E + +AS
Sbjct: 146 AATWANDGLDAEPSKGKSKPASDYLNFDSDS----GQESEEEG-AGEDLEEEASLEPKAA 200
Query: 182 VKSACASVALLHQKEIKGGT 201
V+ + + L K +K G+
Sbjct: 201 VQKELSDMDYLKSKMVKAGS 220
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 138 (53.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 117 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 167
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 168 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 226
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 287 PIAVDWAV-----PKNIYSS 301
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 45 (20.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VV+++S
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSS 210
Score = 41 (19.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 119 (46.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
KL + + + + +K F+ G V + + +TG S+GF FV F+C+ A +AI++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 278 FNGQKFGKRPIAVDWAV-----PKNIYSSGGAAAG 307
+G++ R I V+ A P++ + GG G
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSSFGGGGGYGG 130
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 138 (53.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 52/200 (26%), Positives = 88/200 (44%)
Query: 117 KQRVARTVIIGGLLNADMAEE-VHRLAGSIGTV--CSVTY------PLPKEELEQHGLAQ 167
+ + +T+ +G L + D+ E + +L IG C + P E +H A
Sbjct: 2 EDEMPKTLYVGNL-SRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 168 EG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPF 226
M+ ++ VK A+ +K+ TV + Q + + + + ++
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD-----HFHVFVGDLSP 115
Query: 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286
+ +IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R
Sbjct: 116 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 175
Query: 287 PIAVDWAV-----PKNIYSS 301
I +WA PK+ Y S
Sbjct: 176 QIRTNWATRKPPAPKSTYES 195
Score = 45 (20.9 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 586 PKSMTEKGLKKLCIDAVVSRAS 607
PKS E K+L D VV+++S
Sbjct: 189 PKSTYESNTKQLSYDEVVNQSS 210
Score = 41 (19.5 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
T++ + L + ++Q FS FG+++ + V KG F++F
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIME-IRVFPD-----KGYSFVRF 256
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 103 (41.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 75 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 133
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 134 NGQFLFDRPMHVKMDDKSVPHEDYRS 159
Score = 84 (34.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
N IF+ NLPFDL +++K++FS G V+ F + + K KG G ++F
Sbjct: 360 NQIFVRNLPFDLTWQKLKEKFSQCGHVM-FAEIKMENGKS-KGCGTVRF 406
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 101 (40.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 37/137 (27%), Positives = 60/137 (43%)
Query: 161 EQHGLAQEG-CKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKL 219
E+H AQ+ M+ + V A L Q E+K +Q S+ Q L
Sbjct: 239 EKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQ--ERVSRYQGVNL 296
Query: 220 IIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279
++N+ ++ FSP G + + + T+ G SKGF FV F+ +A A+ + N
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 280 GQKFGKRPIAVDWAVPK 296
G+ +P+ V A K
Sbjct: 355 GRIVSTKPLYVALAQRK 371
Score = 92 (37.4 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 211 GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
G++ ++ + I+N N ++++FS G +V + + TG SKGF FV F
Sbjct: 184 GARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHE 242
Query: 270 DAESAIQKFNGQKFGKRPIAV 290
+A+ A+ NG++ R + V
Sbjct: 243 EAQKAVADMNGKEINGRMVYV 263
Score = 85 (35.0 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ FSP G + ++ + + + S G+A++ F DAE A+ N + RP+ + W+
Sbjct: 29 EKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVRIMWS 87
Score = 83 (34.3 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I N D+D+ +++ FS FG+ +S V V+ T R KG GF+ F
Sbjct: 189 EFTN-VYIKNFGDDMDDNRLREIFSRFGKTLS-VKVMMDHTGRSKGFGFVNF 238
Score = 82 (33.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
N RG G+V F E A RA++ NG + RK+ V H R E
Sbjct: 135 NGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKERE 180
Score = 59 (25.8 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS +G + S V+ + KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITS-AKVMTE-GGHSKGFGFVCF 340
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 109 (43.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272
K+Q L ++N+ ++K+MFS G V + + N G+S+GF FV ++ +A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 273 SAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ G++P+ + A K
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRK 410
Score = 105 (42.0 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 29/110 (26%), Positives = 55/110 (50%)
Query: 191 LLHQKEIKGGTVWARQ--LGGEGSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
L++ K++ G RQ E + T ++ + ++N+P + +E++ F G++ +
Sbjct: 200 LMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAV 259
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
+ + +G S+ F FV F C A SA++K NG G + V A K+
Sbjct: 260 VMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKS 308
Score = 82 (33.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 23/63 (36%), Positives = 31/63 (49%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQR-RSKV 59
+V + S R FG+V F E A AVE NG S+G + V A ++ E+ R K
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKF 318
Query: 60 TQE 62
QE
Sbjct: 319 EQE 321
Score = 74 (31.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT---------- 60
+G+G+VQF E A A++ NG + +++ V H + R + + T
Sbjct: 176 KGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKN 235
Query: 61 --QEVQAEDIEKTMDNKDGVISGA 82
+E+ +++ KT K GVIS A
Sbjct: 236 LPKEIGEDELRKTF-GKFGVISSA 258
Score = 63 (27.2 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E++K+ FS +G V S +L+ +G GF+ +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAY 379
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 97 (39.2 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE-QRRSKVTQ--EVQAED 67
RG+G+V F E ANRA++ NG + RK+ V H R E + +KV + V ++
Sbjct: 138 RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKN 197
Query: 68 IEKTMDNK 75
+ MD+K
Sbjct: 198 FGEDMDDK 205
Score = 94 (38.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ + ++ FSP G + + + T+ G SKGF FV F+ +A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 93 (37.8 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
V S RGFG+V + E+A +AV NG V GR + V A R + + +
Sbjct: 222 VMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFE 281
Query: 62 EVQAEDIEK 70
+++ E I +
Sbjct: 282 QIKQERINR 290
Score = 90 (36.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ FSP G + ++ + + T S G+A++ F DAE A+ N + RPI + W+
Sbjct: 29 EKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS 87
Score = 82 (33.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 39/171 (22%), Positives = 69/171 (40%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXX 482
E N ++I N D+D++ +K+ FSAFG +S V V+ + R +G GF+ +
Sbjct: 189 EFTN-VYIKNFGEDMDDKRLKEIFSAFGNTLS-VKVMMDNSGRSRGFGFVNYGNHEEAQK 246
Query: 483 XXXXXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHR-NLYLAKEGLILE 541
G + GR + V E+ + + R N Y +G+ L
Sbjct: 247 AVTEMN-----GKEVNGRMVYVGRAQKRIERQG-ELKRKFEQIKQERINRY---QGVNLY 297
Query: 542 GTPAAEGVSDDDMSKRQMLHEK-KMTKLQSPNFHVSRTRLVIYNLPKSMTE 591
+G+ DD + K + TK+ + H V ++ P+ T+
Sbjct: 298 VKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATK 348
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 94 (38.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292
+KD+F G +V + + ++G SKGF FV F DA+ A+ + NG++ + I V
Sbjct: 5 LKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 63
Query: 293 AVPK 296
A K
Sbjct: 64 AQKK 67
Score = 89 (36.4 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 25 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 84
Query: 67 DIEK 70
I +
Sbjct: 85 RITR 88
Score = 55 (24.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVS 454
+++ NL +D+E +++ FS FG + S
Sbjct: 94 LYVKNLDDGIDDERLRKEFSPFGTITS 120
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A +
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASN 62
Query: 274 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 311
A++ NG+ R I VD A K+ + G A G + +
Sbjct: 63 AMRAMNGESLDGRQIRVDHA-GKSARGTRGGAFGARGR 99
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 137 (53.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 208 GGE-GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266
GG+ G + L + N+ A+ E++DMF G V V++ + DTGL+KGFAF+ F
Sbjct: 213 GGKYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFA 272
Query: 267 CKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ DA A K +G F + V++A
Sbjct: 273 DREDAVKACNKMDGWGFKHLILRVEFA 299
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 119 (46.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 43/124 (34%), Positives = 60/124 (48%)
Query: 177 VLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSK----TQKWKLIIRNIPFKAKVNE 232
V Y T KSA + LH +I G Q+ S+ + KL + I K N+
Sbjct: 102 VTYYTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNEND 161
Query: 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--G-KRPIA 289
I+ MFSP G + I D GLS+G AFV FT ++ A+SAI+ + + G PI
Sbjct: 162 IRLMFSPYGQIEECRILRGPD-GLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIV 220
Query: 290 VDWA 293
V +A
Sbjct: 221 VKFA 224
Score = 68 (29.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 417 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
Q EG + +FI +LP + ++++ Q F FG V+S + + T K GF+ +
Sbjct: 443 QKEGPEGAN--LFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSY 498
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 105 (42.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 37/136 (27%), Positives = 62/136 (45%)
Query: 169 GCKMDASAVLYTTVKSACASVALLH-QKEIKGGT--VWARQLGGEGSKTQKWKLIIRNIP 225
G + + Y +SA + LH QK + G T + + E S+ + KL + +
Sbjct: 174 GMHKGCAFLTYCARESAIKAQNALHEQKTLPGMTRPIQVKPADSE-SRGEDRKLFVGMLN 232
Query: 226 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285
+ ++ +F P G++ + D G SKG AFVKF+ +A+SAI +G +
Sbjct: 233 KQQTEEDVYRLFEPYGVIEECTVLRGPD-GNSKGCAFVKFSTHAEAQSAISALHGSQ--T 289
Query: 286 RPIAVDWAVPKNIYSS 301
P D +P+ SS
Sbjct: 290 MPTGSDSLLPQGASSS 305
Score = 84 (34.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 417 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
Q EGE +FI +LP + + E+ Q F FG V+S + + T + K GF+ F
Sbjct: 503 QREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSF 560
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 135 (52.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 208 GGEGSK-TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266
GG G + + L++RNIP + E+++ F G V +VYIP + +G +GFAFV+F
Sbjct: 37 GGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFV 96
Query: 267 CKRDAESAIQKFNGQKFGKRPIAV 290
DA A + N + F R I V
Sbjct: 97 DAYDAGEAQRSMNRRSFAGREITV 120
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 106 (42.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 36/137 (26%), Positives = 64/137 (46%)
Query: 161 EQHGLAQEGC-KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKL 219
E+H AQ+ M+ V + + A + Q E+K +Q + Q L
Sbjct: 239 EKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQ--DRLRRYQGVNL 296
Query: 220 IIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279
++N+ ++++ FSP G++ + + T+ G SKGF FV F+ +A A+ + N
Sbjct: 297 YVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 280 GQKFGKRPIAVDWAVPK 296
G+ G +P+ V A K
Sbjct: 355 GRIVGTKPLYVALAQRK 371
Score = 85 (35.0 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ ++N+P ++D+FS G + +V + + ++G S+ F FV F +A+ A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 279 NGQKFGKR 286
NG++ R
Sbjct: 252 NGKEVSGR 259
Score = 83 (34.3 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 4 KKGSNEH--RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE 53
K +EH RGFG+V F E A +A+ NG + RK+ V H R E
Sbjct: 129 KVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERE 180
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 141 (54.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 80/329 (24%), Positives = 140/329 (42%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK----- 58
+ G+N R FGYV F ED +A+E+ G V G +I ++ R S + R ++
Sbjct: 200 RTGTN--RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK 256
Query: 59 -----VTQ----EVQAEDIEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATL-GID 107
+T+ EV + +E + ++DG G K ++ K ++ ++ A + G
Sbjct: 257 NLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 316
Query: 108 LADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167
++ + QR RT G N+ + E L S S T +E E+ +
Sbjct: 317 VSLYYTGEKGQRQERT----GK-NSTWSGESKTLVLS-NLSYSATEETLQEVFEKATFIK 370
Query: 168 -----EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK- 218
G + + + + + A ++ ++ EI+G T+ G GS ++Q K
Sbjct: 371 VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKT 430
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L ++ + +K+ F G V I + +TG SKGF FV F + DA++A +
Sbjct: 431 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAM 487
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
+ + +DWA PK GG G
Sbjct: 488 EDGEIDGNKVTLDWAKPKGKGGFGGRGGG 516
>TAIR|locus:2028205 [details] [associations]
symbol:AT1G45100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00546918 RefSeq:NP_175125.1 UniGene:At.52038
ProteinModelPortal:F4HPM6 SMR:F4HPM6 PRIDE:F4HPM6
EnsemblPlants:AT1G45100.1 GeneID:841077 KEGG:ath:AT1G45100
OMA:SAYGANK ArrayExpress:F4HPM6 Uniprot:F4HPM6
Length = 497
Score = 83 (34.3 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++++I + F VG V +V + N+ G G+ FV+F +AE A+ K
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQ-GKHAGWGFVEFASANEAEKALVK- 306
Query: 279 NGQKFGKRPIAVDWA 293
NG+ I++D A
Sbjct: 307 NGEYLHNYKISLDGA 321
Score = 76 (31.8 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 9 EHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKI 41
+H G+G+V+FA AN+A+E KNG + KI
Sbjct: 196 KHVGYGFVEFASAYGANKALEEKNGEYLHNHKI 228
Score = 69 (29.3 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 425 QNTIFICNLPFD--LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+NT+F+ NLP++ L + FS GE+V ++ + + P G GF++F
Sbjct: 373 KNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVDHMGE-PVGCGFVEF 423
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 136 (52.9 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+ L++ NI F+ +++ +F+ G V +V+IP + TG S+GFAFV++ K +A A++
Sbjct: 16 YSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
Query: 277 KFNGQKFGKRPIAVDWA 293
+ +G+ R I V +A
Sbjct: 76 RLDGRVVDGREITVQFA 92
>UNIPROTKB|F1NS10 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:AADN02063494
EMBL:AADN02063495 EMBL:AADN02063496 IPI:IPI00599569
Ensembl:ENSGALT00000000512 ArrayExpress:F1NS10 Uniprot:F1NS10
Length = 559
Score = 99 (39.9 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 34/110 (30%), Positives = 51/110 (46%)
Query: 190 ALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249
++L+ I + A Q G GS + + N+ +K ++K++FS G V I
Sbjct: 171 SILNNPNIPNEIIHALQAGRLGST-----VFVANLDYKVGWKKLKEVFSMAGAVVRADIL 225
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV---DWAVPK 296
+ D G S+G V F +A AI FNGQ RP+ V + A PK
Sbjct: 226 EDKD-GKSRGIGTVTFEQAIEAVQAISMFNGQLLFDRPMHVKMDERAFPK 274
Score = 65 (27.9 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXXXXXXX 487
IF+ NLPFD + +K +F+ G V+ + + + K KG G ++F
Sbjct: 484 IFVRNLPFDFTWKMLKDKFNECGHVL-YADIKMENGKS-KGCGVVRFESPEVAERACRMM 541
Query: 488 XXXXGLGIFLKGRQLTV 504
GI L+GR++ V
Sbjct: 542 N-----GIQLRGREIDV 553
Score = 64 (27.6 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
RG V+F + E +A E+ N S+GGR + VK
Sbjct: 100 RGCAVVEFKMEESMKKAAEVLNKHSLGGRPLKVK 133
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 85 (35.0 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 10 HR--GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAED 67
HR G+GYV F + DA +A+E N + G+ I + + A L R+S + V ++
Sbjct: 48 HRSLGYGYVNFLQVGDAQKALETMNFDLIKGKSIRLMWSQRDACL--RKSGIGN-VFIKN 104
Query: 68 IEKTMDNK 75
++K++DNK
Sbjct: 105 LDKSIDNK 112
Score = 80 (33.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
Q KL I+N+ ++ FS G + V + + G SKGF + F A A
Sbjct: 291 QAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ--EAGQSKGFGLICFFSPEAAAKA 348
Query: 275 IQKFNGQKFGKRPIAV 290
+ + NG+ G +P+ +
Sbjct: 349 MAEMNGRILGSKPLNI 364
Score = 74 (31.1 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
I+N ++ +FS G +V + + +G SK F FV F + A++A++ NG
Sbjct: 194 IKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNG 252
Query: 281 QKFGKRPIAVDWAVPK 296
+ + I V A K
Sbjct: 253 RDINGQTIFVGRAQKK 268
Score = 63 (27.2 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
++I NL +D+E +++ FS FG + V V+ Q + KG G + F
Sbjct: 295 LYIKNLDDTIDDETLRKEFSVFGSICR-VKVM-QEAGQSKGFGLICF 339
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 124 (48.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 47/176 (26%), Positives = 73/176 (41%)
Query: 150 SVTYPLPKEE---LEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQ 206
+VT L +++ + Q + Q+ + A+ V V+ A Q G Q
Sbjct: 79 AVTQQLQQQQQAVVAQQAVVQQQQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQ 138
Query: 207 LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV---------YI----PHNTD 253
G GS + LI+ +P +EI+ +FS VG + +V YI P
Sbjct: 139 NGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPS 198
Query: 254 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK-------NIYSSG 302
G S G+ FV + +DAE A+ NG + + I V +A P N+Y SG
Sbjct: 199 KGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSG 254
Score = 60 (26.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472
IFI NL + + + Q F FG V S V T + KG GF+
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFV 448
Score = 58 (25.5 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTK--RPKGTGFLKF 474
+++ LP + +E++ F+ FG +++ +L + KG GF++F
Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITS-RILQNAGNDTQTKGVGFIRF 297
Score = 39 (18.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 575 VSRTRLVIYNLPKSMTEKGLKKL 597
+ L + LPK+MT++ L+ +
Sbjct: 245 IKGANLYVSGLPKTMTQQELEAI 267
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 116 (45.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+++ KL + + F ++D FS G + V + + +T S+GF F+ FT A
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 274 AIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNK 311
A++ NG+ R I VD A K+ + G A G +
Sbjct: 63 AMRAMNGESLDGRQIRVDHA-GKSARGTRGGAFGAHGR 99
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 141 (54.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 80/329 (24%), Positives = 140/329 (42%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK----- 58
+ G+N R FGYV F ED +A+E+ G V G +I ++ R S + R ++
Sbjct: 346 RTGTN--RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK 402
Query: 59 -----VTQ----EVQAEDIEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATL-GID 107
+T+ EV + +E + ++DG G K ++ K ++ ++ A + G
Sbjct: 403 NLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 462
Query: 108 LADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167
++ + QR RT G N+ + E L S S T +E E+ +
Sbjct: 463 VSLYYTGEKGQRQERT----GK-NSTWSGESKTLVLS-NLSYSATEETLQEVFEKATFIK 516
Query: 168 -----EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK- 218
G + + + + + A ++ ++ EI+G T+ G GS ++Q K
Sbjct: 517 VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKT 576
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L ++ + +K+ F G V I + +TG SKGF FV F + DA++A +
Sbjct: 577 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 633
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
+ + +DWA PK GG G
Sbjct: 634 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 662
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 141 (54.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 80/329 (24%), Positives = 140/329 (42%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK----- 58
+ G+N R FGYV F ED +A+E+ G V G +I ++ R S + R ++
Sbjct: 347 RTGTN--RKFGYVDFESAEDLEKALEL-TGLKVFGNEIKLEKPKGRDSKKVRAARTLLAK 403
Query: 59 -----VTQ----EVQAEDIEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATL-GID 107
+T+ EV + +E + ++DG G K ++ K ++ ++ A + G
Sbjct: 404 NLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 463
Query: 108 LADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167
++ + QR RT G N+ + E L S S T +E E+ +
Sbjct: 464 VSLYYTGEKGQRQERT----GK-NSTWSGESKTLVLS-NLSYSATEETLQEVFEKATFIK 517
Query: 168 -----EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK- 218
G + + + + + A ++ ++ EI+G T+ G GS ++Q K
Sbjct: 518 VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKT 577
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L ++ + +K+ F G V I + +TG SKGF FV F + DA++A +
Sbjct: 578 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 634
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
+ + +DWA PK GG G
Sbjct: 635 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 663
>MGI|MGI:1926465 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003823
"antigen binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1926465 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
ChiTaRS:HNRNPM InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AK011521 EMBL:BC005758 EMBL:BC065172
IPI:IPI00132443 IPI:IPI00480357 RefSeq:NP_001103383.1
RefSeq:NP_084080.1 UniGene:Mm.311439 ProteinModelPortal:Q9D0E1
SMR:Q9D0E1 IntAct:Q9D0E1 STRING:Q9D0E1 PhosphoSite:Q9D0E1
PaxDb:Q9D0E1 PRIDE:Q9D0E1 Ensembl:ENSMUST00000087582
Ensembl:ENSMUST00000148178 GeneID:76936 KEGG:mmu:76936
InParanoid:Q9D0E1 NextBio:346119 Bgee:Q9D0E1 Genevestigator:Q9D0E1
Uniprot:Q9D0E1
Length = 729
Score = 106 (42.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 34/110 (30%), Positives = 53/110 (48%)
Query: 190 ALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249
++L+ I + A Q G GS + + N+ +K ++K++FS G+V I
Sbjct: 181 SILNNPNIPNEIIHALQAGRLGST-----VFVANLDYKVGWKKLKEVFSMAGVVVRADIL 235
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV---DWAVPK 296
+ D G S+G V F +A AI FNGQ RP+ V + A+PK
Sbjct: 236 EDKD-GKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK 284
Score = 67 (28.6 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
IF+ NLPFD + +K +F+ G V+ + + + K KG G +KF
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVL-YADIKMENGKS-KGCGVVKF 698
Score = 58 (25.5 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
RG V+F + E +A E+ N S+ GR + VK
Sbjct: 111 RGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVK 144
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 95 (38.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 28/89 (31%), Positives = 40/89 (44%)
Query: 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAED 67
N +G+G+V F E ANRA+E NG + RK+ V H R E E
Sbjct: 135 NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVY 194
Query: 68 IEKTMDNKDGVISGAEKHSSKLLESGKTV 96
I+ ++ D +EK + E GKT+
Sbjct: 195 IKNFGEDID-----SEKLKNIFTEFGKTL 218
Score = 93 (37.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L ++N+ +++ F+P G + + + TD G S+GF FV F+ +A A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVM--TDGGHSRGFGFVCFSSPEEATKAVTEM 353
Query: 279 NGQKFGKRPIAVDWAVPK 296
NG+ +P+ V A K
Sbjct: 354 NGRIVSTKPLYVALAQRK 371
Score = 91 (37.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
M ++G + RGFG+V F DA RAV NG + GR + V A R + +
Sbjct: 223 MTDERGRS--RGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKF 280
Query: 61 QEVQAEDIEK 70
++++ E I++
Sbjct: 281 EQIKQERIQR 290
Score = 90 (36.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 237 FSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
FSP G + ++ + + T S G+A++ F DAE A+ N + RPI + W+
Sbjct: 31 FSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRIMWS 87
Score = 77 (32.2 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I N D+D+E++K F+ FG+ +S V V+ R +G GF+ F
Sbjct: 189 EFTN-VYIKNFGEDIDSEKLKNIFTEFGKTLS-VCVMTDERGRSRGFGFVNF 238
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 98 (39.6 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 211 GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
G++ +++ + I+N +KD+F G +V + + ++G SKGF FV F
Sbjct: 184 GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK 296
DA+ A+ + NG++ + I V A K
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 91 (37.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + Q K T E +
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE-RQTELKRTFEQMKQ 285
Query: 67 D 67
D
Sbjct: 286 D 286
Score = 89 (36.4 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 66 (28.3 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITS-AKVMME-GGRSKGFGFVCF 340
Score = 65 (27.9 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++T SN + YV F +DA A++ N + G+ + + + SL R+S V
Sbjct: 46 LITSGSSN----YAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVG 99
Query: 61 QEVQAEDIEKTMDNK 75
+ ++++K+++NK
Sbjct: 100 N-IFVKNLDKSINNK 113
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 115 (45.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 51/209 (24%), Positives = 88/209 (42%)
Query: 100 KAATLGIDLADK---EDCSQKQRVARTVIIGGL----LNADMAEEVHRLAGSIGTVCSVT 152
KA + G AD ++ ++ T+ I L N + E L G + T
Sbjct: 567 KAVSQGFSTADTFAADEGDEEVMATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIK-T 625
Query: 153 YPLPK---EELEQ-HGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLG 208
P PK + L G A K A A L L+ + KG +
Sbjct: 626 KPDPKNPGQTLSMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRK 685
Query: 209 GEGSK---TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
+ +K ++ K+II+N+PF+A +++ +F G + +V +P D ++GF F F
Sbjct: 686 EDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADF 744
Query: 266 TCKRDAESAIQKF-NGQKFGKRPIAVDWA 293
R+AE+A+ N G+R + +++A
Sbjct: 745 VSAREAENAMDALKNTHLLGRR-LVLEFA 772
Score = 112 (44.5 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RN+ ++ K +E++ +FSP G + +++ +T SKGFA+V++ A A +
Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355
Query: 278 FNGQKFGKRPIAVDWAVPKNIY 299
+G+ F R + + A K Y
Sbjct: 356 LDGKIFQGRLLHILPASQKKTY 377
Score = 70 (29.7 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
I I NLPF ++V+ F A+G++ S V V + + +G GF F
Sbjct: 699 IIIKNLPFQATKKDVRSLFGAYGQLRS-VRVPKKFDRSARGFGFADF 744
Score = 58 (25.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 28/121 (23%), Positives = 50/121 (41%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEK 70
+GF YVQ+A + A A +G GR + + A + + + ++++ + +K
Sbjct: 336 KGFAYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQKKTYKLDEHELSKLPLKK--QK 393
Query: 71 TMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLAD-----KEDCSQKQRVARTVI 125
+ K S +S L + V A +G+ AD D + KQ A T +
Sbjct: 394 QIKRKQEAASSTFSWNS-LYMNADAVMSSVAERIGVSKADLLDPTSSDAAVKQAHAETHV 452
Query: 126 I 126
I
Sbjct: 453 I 453
Score = 53 (23.7 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 419 EGEDELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTG 470
EG++E+ T +FI NL F N+ + AF + FV + PK G
Sbjct: 583 EGDEEVMATATLFIKNLNFSTTNQSL---IEAFRPLDGFVSARIKTKPDPKNPG 633
Score = 50 (22.7 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAED-IE 69
R G+V F E A +AV N T + KI V A E K ++ Q +D +
Sbjct: 39 RRIGFVGFKSSEAAQQAVSYFNKTYMRMSKISVDIAKP-IDAEPAHRKDSRTAQPDDALG 97
Query: 70 KTMDNK-DG-VI--SGAEKHSSKLLESGKT 95
+ K DG I S +++ S L + KT
Sbjct: 98 NNLKRKRDGDTIKDSKTQEYLSLLQQPSKT 127
Score = 49 (22.3 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 577 RTRLVIYNLPKSMTEKGLKKL 597
RT+++I NLP T+K ++ L
Sbjct: 696 RTKIIIKNLPFQATKKDVRSL 716
Score = 40 (19.1 bits), Expect = 0.00039, Sum P(4) = 0.00039
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEV 452
I + N + E++++ F FG++
Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQI 504
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 115 (45.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+++++F P G + +Y+ + TG SKGFAF+ F + DA AI +G + + V+
Sbjct: 52 DLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 111
Query: 292 WAVP 295
WA P
Sbjct: 112 WAKP 115
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 115 (45.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
K+++RN+PF + +K FS G + V + + SKG+AF++FT + DA AI+
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 278 FNGQKFGKRPIAVDWAVP 295
+ + + R I +D A P
Sbjct: 101 MDRRMYNGRMIYIDIAKP 118
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 138 (53.6 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VGLV + + ++ +TG KG+ F ++ + A SA++
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 279 NGQKFGKRPIAVDWAVP-KN 297
NG++F R + VD A KN
Sbjct: 86 NGREFSGRALRVDNAASEKN 105
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 98 (39.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 211 GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
G++ +++ + I+N +KD+F G +V + + ++G SKGF FV F
Sbjct: 17 GARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 75
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK 296
DA+ A+ + NG++ + I V A K
Sbjct: 76 DAQKAVDEMNGKELNGKQIYVGRAQKK 102
Score = 89 (36.4 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 60 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 119
Query: 67 DIEK 70
I +
Sbjct: 120 RITR 123
Score = 88 (36.0 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 179
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 180 TKAVTEMNGRIVATKPLYVALAQRK 204
Score = 67 (28.6 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 173
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 95 (38.5 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 211 GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
G++ +++ + I+N+ ++D+FS G +V + + ++G SKGF FV F
Sbjct: 184 GARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPK 296
DA A+ + NG+ + I V A K
Sbjct: 243 DARKAVDEMNGKDLNGKQIYVGRAQKK 269
Score = 90 (36.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272
+ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 300 RCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV--TMEGGRSKGFGFVCFSSPEEAT 357
Query: 273 SAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 358 KAVTEMNGRIVATKPLYVALAQRK 381
Score = 88 (36.0 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQR---RSKVTQEVQ 64
N +G+G+V F E+A RA+E NG + RK+ V R + R+K V
Sbjct: 135 NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVY 194
Query: 65 AEDIEKTMDNK 75
+++ + MD++
Sbjct: 195 IKNLGEDMDDE 205
Score = 87 (35.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 175 SAVLYTTVKSACASVALLHQKEIKGGTV---WARQLGGEGSKTQKWKLIIRNIPFKAKVN 231
++V + ++ A ++ ++ IKG V W+ Q K+ + ++N+
Sbjct: 55 ASVNFQQLEDAERALDTMNFDVIKGKPVRIMWS-QRDPSLRKSGVGNIFVKNLDRSIDSK 113
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290
+ D FS G + + + D SKG+ FV F + +AE AI+K NG R + V
Sbjct: 114 TLYDTFSAFGNILSCKVV--CDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV 170
Score = 82 (33.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
E N ++I NL D+D+E ++ FS FG +S V V+ + + KG GF+ F
Sbjct: 189 EFTN-VYIKNLGEDMDDERLQDLFSRFGPALS-VKVMTDESGKSKGFGFVSF 238
Score = 69 (29.3 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ V F +EDA RA++ N + G+ + + + SL R+S V + ++++++
Sbjct: 53 GYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFVKNLDRS 109
Query: 72 MDNK 75
+D+K
Sbjct: 110 IDSK 113
Score = 65 (27.9 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S + R KG GF+ F
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCF 350
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 131 (51.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 214 TQKWKLIIR--NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
TQ + +R N+ NE+ ++F VG + +++ + +T SKGFAF+ ++ + +A
Sbjct: 180 TQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEA 239
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
+ AI+K N F ++V+WA P N
Sbjct: 240 KRAIEKLNRHGFENLLLSVEWAKPSN 265
Score = 41 (19.5 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 56 RSKVTQEVQAEDIEKTMDNKDGV 78
+ + T++V+AED K ++G+
Sbjct: 151 KDEETEDVKAEDPSKAAGRREGL 173
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 131 (51.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 214 TQKWKLIIR--NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
TQ + +R N+ NE+ ++F VG + +++ + +T SKGFAF+ ++ + +A
Sbjct: 180 TQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEA 239
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKN 297
+ AI+K N F ++V+WA P N
Sbjct: 240 KRAIEKLNRHGFENLLLSVEWAKPSN 265
Score = 41 (19.5 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 56 RSKVTQEVQAEDIEKTMDNKDGV 78
+ + T++V+AED K ++G+
Sbjct: 151 KDEETEDVKAEDPSKAAGRREGL 173
>UNIPROTKB|H0YN19 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC066612
EMBL:AC090526 HGNC:HGNC:17940 Ensembl:ENST00000558395
Uniprot:H0YN19
Length = 290
Score = 103 (41.3 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+ FK ++K++FS G V I + D G S+G V F +A AI F
Sbjct: 16 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 74
Query: 279 NGQKFGKRPIAV---DWAVPKNIYSS 301
NGQ RP+ V D +VP Y S
Sbjct: 75 NGQFLFDRPMHVKMDDKSVPHEEYRS 100
Score = 74 (31.1 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVV 453
N IF+ NLPFDL +++K++FS G V+
Sbjct: 263 NQIFVRNLPFDLTWQKLKEKFSQCGHVM 290
>TAIR|locus:2153659 [details] [associations]
symbol:EIF3G2 "eukaryotic translation initiation factor
3G2" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003743 GO:GO:0005852 EMBL:AB017060 KO:K03248
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 HSSP:P11940 IPI:IPI00528477 RefSeq:NP_196219.3
UniGene:At.20561 ProteinModelPortal:Q9FI86 SMR:Q9FI86 STRING:Q9FI86
PRIDE:Q9FI86 EnsemblPlants:AT5G06000.1 GeneID:830487
KEGG:ath:AT5G06000 TAIR:At5g06000 InParanoid:Q9FI86 OMA:KFNDEGK
PhylomeDB:Q9FI86 ProtClustDB:CLSN2925586 Genevestigator:Q9FI86
Uniprot:Q9FI86
Length = 308
Score = 134 (52.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/94 (28%), Positives = 50/94 (53%)
Query: 205 RQLGGEGSKTQKWKLIIR--NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 262
R+ GG +++ + +R N+ + ++ ++F P G V ++ + T +S+GF F
Sbjct: 192 RKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGF 251
Query: 263 VKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
V F + DA+ AI K NG + + V+W+ PK
Sbjct: 252 VSFVSREDAQRAINKLNGYGYDNLILRVEWSTPK 285
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 135 (52.6 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 79/323 (24%), Positives = 129/323 (39%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGR--------KIGVKHAMHRASLEQRRS-KVTQ 61
R FGYV F ED +A+E+ G K K R L + KVTQ
Sbjct: 1 RKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQ 60
Query: 62 ----EVQAEDIEKTMDNKDGVISGAEKHSSKL-LESGKTVKPRKAATL---GIDLADKED 113
EV + +E + +KDG G K ++ KT++ ++ + I L +
Sbjct: 61 DELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGE 120
Query: 114 CSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLA-----QE 168
Q Q GG N+ + E L S S T +E E+ Q
Sbjct: 121 KGQNQDFR-----GGK-NSTWSGESKTLVLS-NLAYSATEETLQEVFEKATFIKVPQNQN 173
Query: 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS---KTQKWK-LIIRNI 224
G + + + + + A ++ +++EI+G + G GS ++Q K L ++ +
Sbjct: 174 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGL 233
Query: 225 PFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284
+ +K+ F G + I + +TG SKGF FV F + DA++A + +
Sbjct: 234 SEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 290
Query: 285 KRPIAVDWAVPKNIYSSGGAAAG 307
+ +DWA PK GG G
Sbjct: 291 GNKVTLDWAKPKGEGGFGGRGGG 313
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 102 (41.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
+K Q L ++N+ ++++ F+P G + + + T+ G SKGF FV F+ +A
Sbjct: 317 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEA 375
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPKNIYSS 301
AI + N Q +P+ V A K++ S
Sbjct: 376 TKAITEKNQQIVAGKPLYVAIAQRKDVRRS 405
Score = 86 (35.3 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E +K L ++NI + + +++F+ G + + + + D G KGF FV +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHE 270
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVPKN 297
DA A++ N + + V A KN
Sbjct: 271 DAVKAVEALNDSELNGEKLYVGRAQKKN 298
Score = 83 (34.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 4 KKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEV 63
K + +GFG+V + EDA +AVE N + + G K+ V A + +R + ++
Sbjct: 252 KDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK---NERMHVLKKQY 308
Query: 64 QAEDIEKTMDNKDGV 78
+A +EK M GV
Sbjct: 309 EAYRLEK-MAKYQGV 322
Score = 70 (29.7 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+F+ NL +D+E++++ F+ +G + S V+ + KG GF+ F
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITS-AKVMRTENGKSKGFGFVCF 369
Score = 66 (28.3 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F E +A+E N T + GR + + SL R K + + +++
Sbjct: 80 GYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSL---RKKGSGNIFIKNLHPD 136
Query: 72 MDNK 75
+DNK
Sbjct: 137 IDNK 140
Score = 64 (27.6 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQA 65
+ + +GFG+V F A A++ NG + G++I V A H S ++R S++ +E +A
Sbjct: 162 NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV--APH-LSRKERDSQL-EETKA 216
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 88 (36.0 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +K+ F G +V
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVK 221
Query: 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ + D G S+GF FV F DA+ A+ NG+ + I V A K
Sbjct: 222 VMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Score = 85 (35.0 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEK 70
RGFG+V F EDA +AV+ NG + G+ I V A + + + ++++ + I +
Sbjct: 231 RGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITR 290
Score = 84 (34.6 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ F+P G + + + + G SKGF FV F+ +A
Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVM--MEGGRSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRK 371
Score = 75 (31.5 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKT 71
G+ YV F DA RA++ N + G+ + + + SL R+S V + ++++K+
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSL--RKSGVGN-IFIKNLDKS 109
Query: 72 MDNK 75
+DNK
Sbjct: 110 IDNK 113
Score = 65 (27.9 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ F+ FG + S V+ + R KG GF+ F
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITS-AKVMME-GGRSKGFGFVCF 340
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 98 (39.6 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 8 NEH--RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLE-QRRSKVTQ--E 62
+EH RG+G+V F E ANRA++ NG + RK+ V H R E + +KV +
Sbjct: 133 DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTN 192
Query: 63 VQAEDIEKTMDNK 75
V ++ + MD+K
Sbjct: 193 VYIKNFGEDMDDK 205
Score = 96 (38.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S RGFG+V + E+A +AV NG V GR I V A R + + ++++ E
Sbjct: 227 SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQE 286
Query: 67 DIEK 70
I +
Sbjct: 287 RINR 290
Score = 88 (36.0 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ + ++ F P G + + + T+ G SKGF FV F+ +A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 347 TKAVTEMNGRIVSTKPLYVALAQRK 371
Score = 84 (34.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+ FSP G + ++ + + T S +A++ F DAE A+ N + RPI + W+
Sbjct: 29 EKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWS 87
Score = 83 (34.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 39/172 (22%), Positives = 72/172 (41%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFXXXXXXXX 482
E N ++I N D+D++ +++ FSAFG +S V V+ + R +G GF+ +
Sbjct: 189 EFTN-VYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMDDSGRSRGFGFVNYGNHEEAQK 246
Query: 483 XXXXXXXXXGLGIFLKGRQLTVXXXXXXXXXXXXEIDKSKNETNDHR-NLYLAKEGLILE 541
G + GR + V E+ + + R N Y +G+ L
Sbjct: 247 AVSEMN-----GKEVNGRMIYVGRAQKRIERQS-ELKRKFEQIKQERINRY---QGVNLY 297
Query: 542 GTPAAEGVSDDDMSKRQMLHEKKMT--KLQSPNFHVSRTRLVIYNLPKSMTE 591
+G+ DDD +++ L +T K+ + H V ++ P+ T+
Sbjct: 298 VKNLDDGI-DDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATK 348
>UNIPROTKB|F1MY44 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00826962
RefSeq:NP_001178152.1 UniGene:Bt.48882 PRIDE:F1MY44
Ensembl:ENSBTAT00000011559 GeneID:515290 KEGG:bta:515290
NextBio:20871749 ArrayExpress:F1MY44 Uniprot:F1MY44
Length = 730
Score = 104 (41.7 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 34/110 (30%), Positives = 53/110 (48%)
Query: 190 ALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249
++L+ I + A Q G GS + + N+ +K ++K++FS G+V I
Sbjct: 182 SILNNPNIPNEIIHALQAGRLGST-----VFVANLDYKVGWKKLKEVFSMAGVVVRADIL 236
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV---DWAVPK 296
+ D G S+G V F +A AI FNGQ RP+ V + A+PK
Sbjct: 237 EDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK 285
Score = 67 (28.6 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
IF+ NLPFD + +K +F+ G V+ + + + K KG G +KF
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVL-YADIKMENGKS-KGCGVVKF 699
Score = 58 (25.5 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
RG V+F + E +A E+ N S+ GR + VK
Sbjct: 112 RGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVK 145
>UNIPROTKB|P52272 [details] [associations]
symbol:HNRNPM "Heterogeneous nuclear ribonucleoprotein M"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0042382 "paraspeckles" evidence=IDA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005887 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 EMBL:L03532 EMBL:L32611 EMBL:AF061832
EMBL:BC000138 EMBL:BC008895 EMBL:BC019580 IPI:IPI00171903
IPI:IPI00383296 PIR:S35532 RefSeq:NP_005959.2 RefSeq:NP_112480.2
UniGene:Hs.465808 UniGene:Hs.666214 PDB:2DGV PDB:2DH9 PDB:2DO0
PDB:2OT8 PDBsum:2DGV PDBsum:2DH9 PDBsum:2DO0 PDBsum:2OT8
ProteinModelPortal:P52272 SMR:P52272 DIP:DIP-29336N IntAct:P52272
MINT:MINT-4999200 STRING:P52272 PhosphoSite:P52272 DMDM:55977747
REPRODUCTION-2DPAGE:IPI00383296 UCD-2DPAGE:P52272 PaxDb:P52272
PRIDE:P52272 Ensembl:ENST00000325495 Ensembl:ENST00000348943
GeneID:4670 KEGG:hsa:4670 UCSC:uc010dwd.3 UCSC:uc010dwe.3 CTD:4670
GeneCards:GC19P008509 H-InvDB:HIX0137462 HGNC:HGNC:5046
HPA:CAB016113 HPA:HPA024344 MIM:160994 neXtProt:NX_P52272
PharmGKB:PA29370 HOGENOM:HOG000231932 HOVERGEN:HBG054880
InParanoid:P52272 KO:K12887 OMA:PGIERMA OrthoDB:EOG4RBQJN
PhylomeDB:P52272 ChiTaRS:HNRNPM EvolutionaryTrace:P52272
GenomeRNAi:4670 NextBio:17994 ArrayExpress:P52272 Bgee:P52272
CleanEx:HS_HNRNPM Genevestigator:P52272 GermOnline:ENSG00000099783
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
Uniprot:P52272
Length = 730
Score = 104 (41.7 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 34/110 (30%), Positives = 53/110 (48%)
Query: 190 ALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249
++L+ I + A Q G GS + + N+ +K ++K++FS G+V I
Sbjct: 182 SILNNPNIPNEIIHALQAGRLGST-----VFVANLDYKVGWKKLKEVFSMAGVVVRADIL 236
Query: 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV---DWAVPK 296
+ D G S+G V F +A AI FNGQ RP+ V + A+PK
Sbjct: 237 EDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK 285
Score = 67 (28.6 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
IF+ NLPFD + +K +F+ G V+ + + + K KG G +KF
Sbjct: 655 IFVRNLPFDFTWKMLKDKFNECGHVL-YADIKMENGKS-KGCGVVKF 699
Score = 58 (25.5 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVK 44
RG V+F + E +A E+ N S+ GR + VK
Sbjct: 112 RGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVK 145
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 92 (37.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 31/110 (28%), Positives = 55/110 (50%)
Query: 191 LLHQKEIKGGTVWAR-QLGGE-GSKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247
LL+ +++ G +R + E G++ +++ + I+N +KD+F P +
Sbjct: 34 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPA-----LS 88
Query: 248 IPHNTD-TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
+ TD +G SKGF FV F DA+ A+ + NG++ + I V A K
Sbjct: 89 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 138
Score = 89 (36.4 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAE 66
S + +GFG+V F EDA +AV+ NG + G++I V A + + + ++++ +
Sbjct: 96 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 155
Query: 67 DIEK 70
I +
Sbjct: 156 RITR 159
Score = 88 (36.0 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
++ Q L ++N+ ++ FSP G + + + + G SKGF FV F+ +A
Sbjct: 158 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEA 215
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
A+ + NG+ +P+ V A K
Sbjct: 216 TKAVTEMNGRIVATKPLYVALAQRK 240
Score = 85 (35.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 22/71 (30%), Positives = 34/71 (47%)
Query: 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQR---RSKVTQEVQ 64
N +G+G+V F E A RA+E NG + RK+ V R E R+K V
Sbjct: 7 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 66
Query: 65 AEDIEKTMDNK 75
++ + MD++
Sbjct: 67 IKNFGEDMDDE 77
Score = 67 (28.6 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
+++ NL +D+E +++ FS FG + S V+ + R KG GF+ F
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITS-AKVMME-GGRSKGFGFVCF 209
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 110 (43.8 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN----VYIPHNTDTGLSKGFAFVKFTC 267
SK ++ + + ++ VNE D++S +N I + T +S+G+ FV+FT
Sbjct: 181 SKASEYSIFVGDL--SPNVNEF-DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297
+ D +SA+ + GQ G RPI V A PK+
Sbjct: 238 ENDQKSALAEMQGQICGDRPIRVGLATPKS 267
Score = 66 (28.3 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKF 474
D +T+F+ L + EE+K F FGE+V +V + KG GF++F
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIV-YVKI-----PPGKGCGFVQF 345
Score = 45 (20.9 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKN 32
++ + + + G+ +V+FA +A+ A+ M N
Sbjct: 124 LIRNRYTGMNAGYCFVEFASPHEASSAMSMNN 155
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 135 (52.6 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 57/267 (21%), Positives = 111/267 (41%)
Query: 50 ASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATL-GIDL 108
+S ++ + +E + E+ +++ + S ++ S K + K K A +
Sbjct: 95 SSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEES 154
Query: 109 ADKEDCSQKQRVARTVIIGGLL-NAD---MAEEVHRLAGSIGTVCSVTYPLPKEELEQHG 164
++K+ +++ T+ +G L + D + +E + G IG V Y + +G
Sbjct: 155 SNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGA--RVIYERGTDRSRGYG 212
Query: 165 LAQ-EGCKMDASAVLYTTVKSACASVALLHQKEIK--GGTVWARQLGGEGSKTQKWKLII 221
E A+ K K G A++ G S+ L +
Sbjct: 213 YVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSD-TLFL 271
Query: 222 RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281
N+ F A + I ++F+ G V +V IP + +T KGF +V+F+ DA+ A+ G+
Sbjct: 272 GNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGE 331
Query: 282 KFGKRPIAVDWAVPKNIYSSG-GAAAG 307
RP+ +D++ P+ G G + G
Sbjct: 332 YIDNRPVRLDFSSPRPNNDGGRGGSRG 358
Score = 101 (40.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKF 474
E +T+F+ NL F+ D + + + F+ GEVVS +P H T++PKG G+++F
Sbjct: 264 EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPT-HPETEQPKGFGYVQF 315
Score = 77 (32.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ ++G++ RG+GYV F A +A++ G + GR I + + + R+K
Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKF 258
Query: 61 QEVQAE 66
+ +E
Sbjct: 259 GDTPSE 264
WARNING: HSPs involving 276 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 633 546 0.00096 119 3 11 22 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 526
No. of states in DFA: 611 (65 KB)
Total size of DFA: 293 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.21u 0.10s 43.31t Elapsed: 00:00:02
Total cpu time: 43.25u 0.10s 43.35t Elapsed: 00:00:02
Start: Fri May 10 05:24:16 2013 End: Fri May 10 05:24:18 2013
WARNINGS ISSUED: 2