BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006726
(633 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 206/394 (52%), Gaps = 16/394 (4%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+LIIRN+ FK +++K +F+ G V V IP D G +GFAFV+F +A A++
Sbjct: 115 RLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKG 173
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSG--GAAAGVQNKGDGN-SDSGSDD-DLGDDDAETAS 333
N ++ R +AVDWAV K+ Y +A GV+ D +SG + + + ++
Sbjct: 174 ANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCRVEEQVEDSDD 233
Query: 334 DDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS-DDSALVKGNKEQDSDKT 392
++ + S ++ + V + ++ + + S +DS L +G D
Sbjct: 234 EEDDDSHDDEEERESTIASPVSVHKRAVKRAAPEESIEEDDSYEDSDLEEGGSSYDEGTV 293
Query: 393 VNES-AKVSDVSKLNSSKSKPKSLKQ--TEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449
+ES A+ + + S+ K + L TEG+ T+FI NL FD + E + + F
Sbjct: 294 DSESSAEDQEDEDVPVSEKKKRKLPSDVTEGK-----TVFIRNLSFDSEEEALGEVLQQF 348
Query: 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA-SKTTSGLGIFLKGRQLTVLKAL 508
G++ VLH T+ KG F +F T EAA ++A S G G+ L GRQL V A+
Sbjct: 349 GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 408
Query: 509 DKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKL 568
+ A + K K T RNLYLA+EGLI GT AAEGVS DM+KR+ K KL
Sbjct: 409 TRDEAAKLQTKKVKKPTGT-RNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKL 467
Query: 569 QSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV 602
++ N VS+TRL ++NLPK++ +K L+KL ++A
Sbjct: 468 KNQNIFVSQTRLCLHNLPKAVDDKQLRKLLLEAT 501
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKIDV 75
Score = 36.6 bits (83), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + +P A+ ++++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3
Length = 759
Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 103/177 (58%), Gaps = 2/177 (1%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV-S 485
T+FI NL FD + EE+ + FGE+ VLH T+ KG F +F T EAA + +
Sbjct: 336 TVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLA 395
Query: 486 ASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPA 545
AS G+ L GRQL V A+ + A + K K T RNLYLA+EGLI GT A
Sbjct: 396 ASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGT-RNLYLAREGLIRAGTKA 454
Query: 546 AEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV 602
AEGVS DM+KR+ K KL+ N VSRTRL ++NLPK++ +K L+KL + A
Sbjct: 455 AEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLSAT 511
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
+VT+KGS RGFGYV F+++ED RA +K T+ G KI V
Sbjct: 35 VVTEKGSKACRGFGYVTFSMLEDVQRA--LKEITTFEGCKINV 75
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + +P A+ +++++FS VG V ++ + +GF +V F+ D + A+++
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ +K + RGFG+VQF + +A +A++ N + GR + V A+ + + K TQ
Sbjct: 145 IPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKD-----KYKDTQ 199
Query: 62 EVQAEDIEKTMDNK 75
V A EK+ ++K
Sbjct: 200 SVSAIGEEKSHESK 213
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
T+F+ LP +E++++ FS G V V + +K +G G++ F +E A+
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 487 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETND 527
T G I +TV K KKL +K +K KNE ++
Sbjct: 65 ITTFEGCKI-----NVTVAK---KKL-RNKTKEKGKNENSE 96
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 181/420 (43%), Gaps = 76/420 (18%)
Query: 218 KLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
+LIIRN+P+ K ++ FS G V + IP G GFAFV ++ AE A+
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMKDRKAAEEAMN 166
Query: 277 KFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDS 336
NG + RPIAVDWAV K+ + + D+ S+ +++ E SD+
Sbjct: 167 SLNGTEIDGRPIAVDWAVSKDAFEATTL-----------KDASSE----EENKEFVSDEG 211
Query: 337 NSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNES 396
+S ED ++++ +EEVD S+ L ++E E
Sbjct: 212 HSIVTEDASADSESEEEVD-----------------GHSEGKELAGESEE--------EG 246
Query: 397 AKVSDVSKLNSSKSKPKSLKQTEGEDE-LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455
+ V DV S S S+ ++E L++T+F+ NL F+ +E+ F FG +
Sbjct: 247 SNVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYA 306
Query: 456 VPVLHQVTKRPKGTGFLKFK-------TVEAATAAVSASKTTS------------GLG-- 494
V T R G GF+KF+ +E A+ + T + G+
Sbjct: 307 KLVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQLPTQEPTEAEKRFLPSVLVDEGIDTD 366
Query: 495 -----IFLKGRQLTVLKALDKKLAHD---KEIDKSKNETN---DHRNLYLAKEGLILEGT 543
L GR L V A+ +K A D K + + K + D R+L+L EG I
Sbjct: 367 SVSSRFLLHGRLLKVTSAVTRKEASDINQKSLQERKQKMGKGVDRRHLFLLNEGKIAADH 426
Query: 544 PAAEGVSDDDMSKR-QMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV 602
P +S+ D + R Q + ++K ++P H+S RL I N+ + + K L L A+
Sbjct: 427 PLFNSLSETDKTLRSQSIAQRKKLLEKNPTLHLSLNRLSIRNISRHIDPKILAMLGRQAI 486
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +RN+ F+ K +++ + FS VG + + + N +TG ++G+ FV F+ DA+ A ++
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 279 NGQKFGKRPIAVDWAVPK 296
+K R + +D+A P+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+VT + E+RG+G+V F+++EDA RA + + GR + + A R +RS+V
Sbjct: 36 VVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPR-----KRSEVD 90
Query: 61 QEVQAEDIEKTM--DNKDGVI 79
+ Q + ++KT+ DN+ +I
Sbjct: 91 TD-QNKAVKKTIRQDNRPRLI 110
>sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NOP4 PE=1 SV=1
Length = 685
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 22/205 (10%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTV----EAATA 482
++F+ N+P+D E + FS FG V +PV+ + T KGT F+ FK E
Sbjct: 291 SVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKN 350
Query: 483 AVSASKTTSGLG------IFLKGRQLTVLKAL---------DKKLAHDKE-IDKSKNETN 526
A +A T+ +G +GR L++ L +K A KE + K+ E
Sbjct: 351 APAAGSTSLLIGDDVMPEYVYEGRVLSITPTLVREDAGRMAEKNAAKRKEALGKAPGE-K 409
Query: 527 DHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKL-QSPNFHVSRTRLVIYNL 585
D RNLYL EG ++EG+ A+ +++ DM R+ ++ ++ +L ++P+ H+S TRL I NL
Sbjct: 410 DRRNLYLLNEGRVVEGSKMADLLTNTDMEIREKSYKLRVEQLKKNPSLHLSMTRLAIRNL 469
Query: 586 PKSMTEKGLKKLCIDAVVSRASKQK 610
P++M +K LK L AVV A++ K
Sbjct: 470 PRAMNDKALKALARKAVVEFATEVK 494
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 216 KWKLIIRNIPFKAK-VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274
K KLIIRN+P+ + ++K +F G V IP D L GFAFV + A
Sbjct: 146 KPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLC-GFAFVTMKKISNCRIA 204
Query: 275 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGS 320
++ K R +AVD+AV KN + A N D N +SG+
Sbjct: 205 LENTKDLKIDGRKVAVDFAVQKNRWEDYKKAQPEMNDKDDN-ESGN 249
Score = 37.4 bits (85), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L +R+IP ++ D FS + + + +T+ S+GF FV F + D + A+ K
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 86
Query: 279 NGQKFGKRPIAVDWA 293
KF + VD A
Sbjct: 87 RKTKFNGHILRVDIA 101
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
+K + + + +RN+P+ A + FS G V + TGL+KG AFV F
Sbjct: 285 NKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+V K + RGFG+V FAV +D A+ T G + V A R RSK T
Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRD-----RSKKT 110
Query: 61 QEVQAEDIEKTMDNKDGVISG 81
EV +EK+ I+G
Sbjct: 111 SEV----VEKSTPESSEKITG 127
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMA-EEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M EE+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A +++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 113/305 (37%), Gaps = 41/305 (13%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRV 120
+ + +TM KD E S+ G+ + R L D Q +
Sbjct: 107 -NLYISGLPRTMTQKD-----VEDMFSRF---GRIINSRV-------LVD-----QTTGL 145
Query: 121 ARTVIIGGLLNADMAEEV------HRLAGSIGTVCSVTYPLPKEELEQHGLAQ---EGCK 171
+R V AEE H+ GS + P + L+Q +
Sbjct: 146 SRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPAR 205
Query: 172 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVN 231
V + + + + + H I G V G+ + W + I N+ A
Sbjct: 206 RFGGPVHHQAQRFRFSPMGVDHMSGISGVNV-------PGNASSGWCIFIYNLGQDADEG 258
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+ MF P G V NV + + +T KGF FV T +A AI NG + G + + V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 292 WAVPK 296
+ K
Sbjct: 319 FKTNK 323
Score = 35.8 bits (81), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 421 EDELQNTIFICN-LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEA 479
D++ T I N LP ++ EE++ FS+ GEV S + +V G GF+ + T +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 480 ATAAVSASKTTSGL 493
A A+S T +GL
Sbjct: 74 AERAIS---TLNGL 84
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 402 VSKLNSSKSKPKSLKQTEGEDELQ----NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVP 457
+S LN + + K++K + + ++I LP + ++V+ FS FG +++
Sbjct: 78 ISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 458 VLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
++ Q T +G F++F A A+++
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
IFI NL D D + Q F FG V + + T + KG GF+ E A A+++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 112 EDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGC 170
EDC + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 11 EDC--RGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY--- 63
Query: 171 KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V Y T K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ----GFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQ 119
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPI 288
+++DMFS G + N + + TGLS+G AF++F + +AE AI FNG K PI
Sbjct: 120 KDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPI 179
Query: 289 AVDWAVPKN 297
V +A N
Sbjct: 180 TVKFAANPN 188
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 106/304 (34%), Gaps = 57/304 (18%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
LI+ +P +E++ +FS +G V + + + G S G+ FV + +DAE AI
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 279 NGQKFGKRPIAVDWAVPK-------NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAET 331
NG + + I V +A P N+Y S G + D E
Sbjct: 82 NGLRLQSKTIKVSYARPSSEVIKDANLYIS-----------------GLPRTMTQKDVE- 123
Query: 332 ASDDSNSSEKEDLPSNADFDEEVDIARKVL-----------NKLTSTTGSLPSLSDDSAL 380
D S + S D+ ++R V +TS G P S +
Sbjct: 124 ---DMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPIT 180
Query: 381 VKGNKEQDSDKTV------------------NESAKVSDVSKLNSSKSKPKSLKQTEGED 422
VK + +K V + A+ S + S G
Sbjct: 181 VKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNA 240
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATA 482
IFI NL D D + Q F FG V + + T + KG GF+ E A
Sbjct: 241 SSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAM 300
Query: 483 AVSA 486
A+++
Sbjct: 301 AIAS 304
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 113/305 (37%), Gaps = 41/305 (13%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V +A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA--RPSSEVIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRV 120
+ + +TM KD E S+ G+ + R L D Q +
Sbjct: 107 -NLYISGLPRTMTQKD-----VEDMFSRF---GRIINSRV-------LVD-----QTTGL 145
Query: 121 ARTVIIGGLLNADMAEEV------HRLAGSIGTVCSVTYPLPKEELEQHGLAQ---EGCK 171
+R V AEE H+ GS + P + L+Q +
Sbjct: 146 SRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPAR 205
Query: 172 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVN 231
V + + + + + H + G V G+ + W + I N+ A
Sbjct: 206 RFGGPVHHQAQRFRFSPMGVDHMSGLSGVNV-------PGNASSGWCIFIYNLGQDADEG 258
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+ MF P G V NV + + +T KGF FV T +A AI NG + G + + V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 292 WAVPK 296
+ K
Sbjct: 319 FKTNK 323
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 39/273 (14%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RNI + A ++ + +FSP G + V+I +T TG SKGFA+V F +A +A +
Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSN 337
+ Q F R + + +P + S D +L +N
Sbjct: 391 LDKQIFQGRLLHI---LPADAKKSHKL------------DEFDLKNLPLKKQRELKRKAN 435
Query: 338 SSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESA 397
S++ + N+ + + + V +KL L + S+ VK + + E++
Sbjct: 436 SAQ-QTFSWNSLYMNQDAVLSSVADKLGMKKSELIDAENSSSAVK--------QALAEAS 486
Query: 398 KVSDVSKLNSSK----SKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453
+ DV K ++ +K LK +E +D + I + N P+ EE+ + F FG+
Sbjct: 487 VIGDVRKFFETRGVDLTKFAQLKNSERDDRV---ILVKNFPYGTTREEIAELFLPFGK-- 541
Query: 454 SFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVS 485
L ++ P GT L+F+ V AA AA S
Sbjct: 542 -----LQRLLLPPSGTIAILQFRDVPAARAAFS 569
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
K+I++N+PF+A ++ ++FS G + +V +P D ++GFAFV+F ++AE+A+ +
Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQ 811
Query: 278 FNGQKFGKRPIAVDW 292
G R + +++
Sbjct: 812 LQGVHLLGRRLVMEF 826
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 484
Q I + NLPF+ ++V + FS+FG++ S V V + K +G F++F + A A+
Sbjct: 751 QGKIIVKNLPFEATRKDVFELFSSFGQLKS-VRVPKKFDKSARGFAFVEFLLPKEAENAM 809
Query: 485 SASKTTSGLGIFLKGRQLTV 504
+ G+ L GR+L +
Sbjct: 810 DQLQ-----GVHLLGRRLVM 824
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 26/98 (26%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPK----------GTGFLKFKT 476
+IFI NL F ++++ ++F F V + QV +P G GF +FKT
Sbjct: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFV-----VAQVKTKPDPKQPGKTLSMGFGFAEFKT 706
Query: 477 VEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAH 514
E A A +SA + G L G +L + KL+H
Sbjct: 707 KEQANAVISAME-----GTILDGHKLQL------KLSH 733
Score = 32.7 bits (73), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVE-AATAAVSA 486
+F+ N+ + ++ ++ FS +GE+ + T + KG ++ FK + AATA V
Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391
Query: 487 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKE 536
K IF +GR L +L A D K +H K + D +NL L K+
Sbjct: 392 DKQ-----IF-QGRLLHILPA-DAKKSH-------KLDEFDLKNLPLKKQ 427
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 109 ADKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 6 GDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY 63
Query: 168 EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFK 227
V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 64 -------GFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRT 116
Query: 228 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGK 285
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 117 MTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSS 176
Query: 286 RPIAVDWAVPKN 297
PI V +A N
Sbjct: 177 EPITVKFAANPN 188
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 113/306 (36%), Gaps = 43/306 (14%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
++ K + G+G+V + +DA RA+ NG + + I V A R S E +
Sbjct: 51 LIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVA--RPSSESIKDA-- 106
Query: 61 QEVQAEDIEKTMDNKDGVISGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRV 120
+ + +TM KD L G+ + R L D Q +
Sbjct: 107 -NLYISGLPRTMTQKD--------VEDMFLPFGRIINSRV-------LVD-----QATGL 145
Query: 121 ARTVIIGGLLNADMAEEV------HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDA 174
+R V AEE H+ GS + +V + + + L + C A
Sbjct: 146 SRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPI-TVKFAANPNQNKNMALLSQLCHSPA 204
Query: 175 ----SAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKV 230
V + + + + + H I G V + S + W + I N+ A
Sbjct: 205 RRFGGPVHHQAQRFRFSPMGVDHMSSISGVNVAS-------SASSGWCIFIYNLGQDADE 257
Query: 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290
+ MF P G V NV + + +T KGF FV T +A AI NG + G + + V
Sbjct: 258 GILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Query: 291 DWAVPK 296
+ K
Sbjct: 318 FFKTSK 323
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
IFI NL D D + Q F FG V + + T + KG GF+ E A A+++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 402 VSKLNSSKSKPKSLK----QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVP 457
++ LN + + K++K + E ++I LP + ++V+ F FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRV 137
Query: 458 VLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
++ Q T +G F++F A A+++
Sbjct: 138 LVDQATGLSRGVAFIRFDKRSEAEEAIAS 166
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 12/191 (6%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQE 168
D D + + RT +I L +M + E+ L SIG V S L ++++ H L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAK--LIRDKVAGHSLGY- 63
Query: 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKA 228
V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 64 ------GFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTM 117
Query: 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKR 286
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 118 TQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSE 177
Query: 287 PIAVDWAVPKN 297
PI V +A N
Sbjct: 178 PITVKFAANPN 188
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276
W + I N+ A + MF P G V NV + + +T KGF FV T +A AI
Sbjct: 244 WCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIA 303
Query: 277 KFNGQKFGKRPIAVDWAVPK 296
NG + G + + V + K
Sbjct: 304 SLNGYRLGDKTLQVSFKTSK 323
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
IFI NL D D + Q F FG V + + T + KG GF+ E A A+++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Score = 32.7 bits (73), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 402 VSKLNSSKSKPKSLK----QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVP 457
++ LN + + K++K + E ++I LP + ++V+ F FG +++
Sbjct: 78 INTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRV 137
Query: 458 VLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
++ Q T +G F++F A A+++
Sbjct: 138 LVDQATGLSRGVAFIRFDKRSEAEEAIAS 166
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQ 276
K+++RNIPF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A
Sbjct: 833 KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892
Query: 277 KF--NGQKFGKRPIAVDWA 293
+ +G+R + ++WA
Sbjct: 893 ALCHSTHLYGRR-LVLEWA 910
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 149/370 (40%), Gaps = 67/370 (18%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q E SKT ++++N+P ++++ F G + V +P T A V+F
Sbjct: 579 QAAAERSKTV---ILVKNLPAGTLAAQLQETFGHFGSLGRVLLPEGGIT------AIVEF 629
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGG--------AAAGVQNKGDGNSD 317
+A A + KF P+ ++WA P ++SS + K +
Sbjct: 630 LEPLEARKAFRHLAYSKFHHVPLYLEWA-PVGVFSSTAPQKKKLQDTPSEPMEKDPAEPE 688
Query: 318 SGSDDDLGDDDAETASDDSNSSEK------------EDLPS------NADFDEEVDIARK 359
+ D + +D+ T NSS K E LP N +FD + ++
Sbjct: 689 TVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKE 748
Query: 360 VLNKLTSTTGSLPS---------LSDDSALVKGNKEQDSDKTVNE-SAKVSDVSKL---- 405
V +K+ + S LS V+ K + + K + + V D KL
Sbjct: 749 VFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
Query: 406 NSSKSKPK---SLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQ 461
+ +KP + K+ + + I + N+PF + E+++ FS FGE+ + +P
Sbjct: 809 SERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMT 868
Query: 462 VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV--------LKALDKKL- 512
T +G GF+ F T + A A +A ++ L GR+L + L+AL +K
Sbjct: 869 GTGTHRGFGFVDFLTKQDAKRAFNALCHST----HLYGRRLVLEWADSEVTLQALRRKTA 924
Query: 513 AHDKEIDKSK 522
AH E K K
Sbjct: 925 AHFHEPPKKK 934
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RN+P+ + +++ +FS G + ++ P ++ T KGFAF+ F A A +
Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAG 307
+GQ F R + V + K S +A G
Sbjct: 463 VDGQVFQGRMLHVLPSTIKKEASEDASALG 492
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487
+F+ NLP+ E++++ FS +G + + +TK+PKG F+ F E A A S
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 488 KTTSGLGIFLKGRQLTVLKALDKKLAHD 515
G +GR L VL + KK A +
Sbjct: 464 D-----GQVFQGRMLHVLPSTIKKEASE 486
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 6 GSNEHRGFGYVQFAVMEDANRAVE-MKNGTSVGGRKIGVKHAMHRASLEQRRSKV 59
G+ HRGFG+V F +DA RA + + T + GR++ ++ A +L+ R K
Sbjct: 869 GTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRKT 923
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+LI++N+P K + +F+ G + + + D G + F F+ F + +A+ A +
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKAQKH 61
Query: 278 FN 279
FN
Sbjct: 62 FN 63
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 7/194 (3%)
Query: 110 DKEDCSQKQRVARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKE---ELEQHGL 165
D D + + RT +I L +M + E+ L SIG V S K E+ L
Sbjct: 7 DHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSL 66
Query: 166 AQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIP 225
++ G + V Y K A ++ L+ ++ T+ + L I +P
Sbjct: 67 SK-GHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLP 125
Query: 226 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--F 283
+++DMF P G + N + + TGLS+G AF++F + +AE AI FNG K
Sbjct: 126 RTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPG 185
Query: 284 GKRPIAVDWAVPKN 297
PI V +A N
Sbjct: 186 SSEPITVKFAANPN 199
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271
S T W + + N+ A + MF P G V NV + + +T KGF FV T +A
Sbjct: 250 SATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 309
Query: 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296
AI NG + G + + V + K
Sbjct: 310 AMAIASLNGYRLGDKTLQVSFKTSK 334
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 26/160 (16%)
Query: 344 LPSNADFDE---------EVDIARKVLNKLTSTTGSLPSLSDDSALVKGN----KEQDSD 390
LP N DE EV+ A+ + +K+ SLS +L G +D++
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAE 86
Query: 391 KTVNESAKVSDVSKLNSSKSKPKSLK----QTEGEDELQNTIFICNLPFDLDNEEVKQRF 446
+ +N LN + + K++K + E ++I LP + ++V+ F
Sbjct: 87 RAIN---------TLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVEDMF 137
Query: 447 SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
FG +++ ++ Q T +G F++F A A+++
Sbjct: 138 LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIAS 177
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQ 276
K+++RNIPF+A EI+++FS G + V +P T TG +GF FV F K+DA+ A
Sbjct: 825 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 884
Query: 277 KF--NGQKFGKRPIAVDWA 293
+ +G+R + ++WA
Sbjct: 885 ALCHSTHLYGRR-LVLEWA 902
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 129/326 (39%), Gaps = 61/326 (18%)
Query: 206 QLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265
Q E SKT ++ +N+P EI++ FS G + V +P T A V+F
Sbjct: 576 QAAAERSKTV---ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGIT------AIVEF 626
Query: 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLG 325
+A A + KF P+ ++WA P ++ + Q++ + +
Sbjct: 627 LEPLEARKAFRHLAYSKFHHVPLYLEWA-PIGVFGAAPQKKDSQHEQPAEKAEVEQETVL 685
Query: 326 DDDAETASDDSNSSE---------------KEDLPSNADFDEEVDIA--RKVLNKLTSTT 368
D + E AS + + +E +P F + ++ + + L + S
Sbjct: 686 DPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKV 745
Query: 369 GSLPS-------------LSDDSALVKGNKEQDSDKTVNE-----------SAKVSDVSK 404
G++ S LS V+ K + + K + + ++S+ +
Sbjct: 746 GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 805
Query: 405 ---LNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLH 460
L S++ K KQT + I + N+PF + E+++ FS FGE+ + +P
Sbjct: 806 KPALTSTRKKQVPKKQT------TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM 859
Query: 461 QVTKRPKGTGFLKFKTVEAATAAVSA 486
T +G GF+ F T + A A +A
Sbjct: 860 TGTGAHRGFGFVDFITKQDAKKAFNA 885
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 413 KSLKQTEGEDELQNT--IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTG 470
++L + E E++L ++ +F+ NL + E++++ FSA+G + + +TK+PKG
Sbjct: 385 RTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFA 444
Query: 471 FLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513
F+ F E A A + G +GR L VL + KK A
Sbjct: 445 FVTFMFPEHAVKAYAEVD-----GQVFQGRMLHVLPSTIKKEA 482
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 198 KGGTVWARQLGGEGSKTQKW----KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD 253
K T W + GE + + +L +RN+ + + +++ +FS G + ++ P ++
Sbjct: 377 KSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL 436
Query: 254 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290
T KGFAFV F A A + +GQ F R + V
Sbjct: 437 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 6 GSNEHRGFGYVQFAVMEDANRAVE-MKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQ 64
G+ HRGFG+V F +DA +A + + T + GR++ ++ A +++ R K + Q
Sbjct: 861 GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRKTARHFQ 920
Query: 65 AEDIEKTMDNKDGVISGAE 83
+K DG++ E
Sbjct: 921 EPPKKKRSAVLDGILEQLE 939
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 3/142 (2%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+LI++N+P K + +F+ G + + + D G + F F+ F + +A++A+
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALNH 61
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSN 337
F+ I V++ K+ A ++ + D D +
Sbjct: 62 FHRSFIDTTRITVEFC--KSFGDPSKPRAWSKHAQKSSQPKQPSQDSVPSDTKKDKKKKG 119
Query: 338 SSEKEDLPSNADFDEEVDIARK 359
S+ E L +A F E + I +K
Sbjct: 120 PSDLEKLKEDAKFQEFLSIHQK 141
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
+ N+P + +E++D+F +G V ++I + TGL KGFAFV F + DA AI + N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 281 QKFGKRPIAVDWAVPKN 297
+ + V+W P N
Sbjct: 240 IRMYHMVLKVEWTRPSN 256
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 484
+NT + NLP +++ +E++ F G V+ +VT PKG F+ F++ + A A+
Sbjct: 175 ENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAI 234
Query: 485 S 485
+
Sbjct: 235 A 235
>sp|A8WLV5|EIF3G_CAEBR Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2
Length = 261
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
+ N+P + +E++D+F +G V ++I + TGL KGFAFV F + DA AI + N
Sbjct: 185 VTNLPQEMNEDELRDVFGRIGRVIRIFIARDKITGLPKGFAFVTFESRDDAARAIAELND 244
Query: 281 QKFGKRPIAVDWAVPKN 297
+ + V+W P N
Sbjct: 245 IRMYHMVLKVEWTRPSN 261
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 416 KQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFK 475
+Q E +NT + NLP +++ +E++ F G V+ ++T PKG F+ F+
Sbjct: 171 RQMERNRSDENTCRVTNLPQEMNEDELRDVFGRIGRVIRIFIARDKITGLPKGFAFVTFE 230
Query: 476 TVEAATAAVS 485
+ + A A++
Sbjct: 231 SRDDAARAIA 240
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 138/325 (42%), Gaps = 47/325 (14%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + ++P + + D FS G V ++ + + T S G+A+V F DAE A+
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNS 338
N +PI + W+ +GV N N D D+ A D+ S
Sbjct: 64 NFDLVRNKPIRIMWSQ----RDPSLRRSGVGNVFIKNLDRAIDNK--------AIYDTFS 111
Query: 339 SEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNE-SA 397
+ L DE+ + S V E+ ++ ++++ +
Sbjct: 112 AFGNILSCKVATDEKGN-------------------SKGYGFVHFETEEAANTSIDKVNG 152
Query: 398 KVSDVSKLNSSKSKPKSLKQTE-GED-ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455
+ + K+ K P+ ++ E GE +L +++ N D D+E++K+ F +G++ S+
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSY 212
Query: 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHD 515
V+ + + KG GF+ F+T EAA AAV A +G +G+ L V +A KK
Sbjct: 213 -KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKD-MG---EGKSLYVARA-QKKAERQ 266
Query: 516 KEIDKSKNETNDHR-------NLYL 533
+E+ + E R NLY+
Sbjct: 267 QELKRKFEELKQKRHESVFGVNLYV 291
Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 177 VLYTTVKSACASVALLHQKEI-KGGTVWARQLGGEGSKTQKWK----------------- 218
V + T ++A A+V L+ K++ +G +++ + + + Q+ K
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGV 287
Query: 219 -LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
L ++N+ + ++ FSP G + + + + G SKGF FV F +A A+ +
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKV-MTDEEGRSKGFGFVCFNAASEATCAVTE 346
Query: 278 FNGQKFGKRPIAVDWA 293
NG+ G +P+ V A
Sbjct: 347 LNGRVVGSKPLYVALA 362
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ +A ++++ MF G++ VY+ + DTG +GFAFV +T K A++A++
Sbjct: 216 LRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAM 275
Query: 279 NGQKFGKRPIAVDWAVPKN 297
+G F + VD++ +N
Sbjct: 276 DGHGFDNLIMKVDYSKKRN 294
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR- 75
Query: 487 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAA 546
L GR+ + +AL +D + +E N L ++E +P
Sbjct: 76 ---------NLNGREFSG-RAL--------RVDNAASEKNKEELKSLGTGAPVIE-SPYG 116
Query: 547 EGVSDDD 553
E +S +D
Sbjct: 117 ETISPED 123
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR- 75
Query: 487 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAA 546
L GR+ + +AL +D + +E N L ++E +P
Sbjct: 76 ---------NLNGREFSG-RAL--------RVDNAASEKNKEELKSLGTGAPVIE-SPYG 116
Query: 547 EGVSDDD 553
E +S +D
Sbjct: 117 ETISPED 123
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR- 75
Query: 487 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAA 546
L GR+ + +AL +D + +E N L ++E +P
Sbjct: 76 ---------NLNGREFSG-RAL--------RVDNAASEKNKEELKSLGTGAPVIE-SPYG 116
Query: 547 EGVSDDD 553
E +S +D
Sbjct: 117 ETISPED 123
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR- 75
Query: 487 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAA 546
L GR+ + +AL +D + +E N L ++E +P
Sbjct: 76 ---------NLNGREFSG-RAL--------RVDNAASEKNKEELKSLGTGAPVIE-SPYG 116
Query: 547 EGVSDDD 553
E +S +D
Sbjct: 117 ESISPED 123
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 292 WAV-----PKNIYSS 301
WA PK+ Y S
Sbjct: 181 WATRKPPAPKSTYES 195
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487
+F+ +L ++ E++K F+ FG + V T + KG GF+ F A A+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 488 KTTSGLGIFLKGRQL-------------TVLKALDKKLAHDKEIDKS 521
G +L GRQ+ + ++ K+L++D+ +++S
Sbjct: 168 G-----GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQS 209
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 199 GGTVWARQLGG-EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLS 257
GGT ++GG + + L + N+ A+ E++DMF G V V++ + +TGL+
Sbjct: 189 GGTAGGERMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLA 248
Query: 258 KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
KGFAF+ F + DA A +K +G F + V++A
Sbjct: 249 KGFAFISFQERSDAAKACEKMDGYGFKHLILRVEFA 284
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291
+IK F+P G + + + + TG SKG+ FV F K DAE+AIQ+ GQ G R I +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 292 WAV-----PKNIYSS 301
WA PK+ Y S
Sbjct: 181 WATRKPPAPKSTYES 195
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487
+F+ +L ++ E++K F+ FG + V T + KG GF+ F A A+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 488 KTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETN 526
G +L GRQ+ A K A KS E+N
Sbjct: 168 G-----GQWLGGRQIRTNWATRKPPA-----PKSTYESN 196
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 36/270 (13%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L IRNI ++A + + +FS G + V+I +T TG SKGF +V+F K DA A +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSN 337
+ Q F R + + +P + K D D +L +
Sbjct: 371 LDKQIFQGRLLHI---LPAD------------KKKDHRLDEFDLKNLPLKKQRELKKKAQ 415
Query: 338 SSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESA 397
++ K N+ + + V +KL T L + S+ VK + + E+
Sbjct: 416 AA-KTQFSWNSLYMNSDAVLESVASKLGVTKSQLIDPENSSSAVK--------QALAEAH 466
Query: 398 KVSDVSKLNSSKS-KPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456
+ DV K + S + E +D++ I + N PF +E+ + FSA+G+
Sbjct: 467 VIGDVRKYFEDRGVDLTSFDKKERDDKI---ILVKNFPFGTTIDEIGELFSAYGQ----- 518
Query: 457 PVLHQVTKRPKGT-GFLKFKTVEAATAAVS 485
L ++ P GT ++F+ +A AA S
Sbjct: 519 --LKRMLMPPAGTIAIIEFRDAPSARAAFS 546
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 223 NIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282
N+PF+A ++ ++F G + +V +P D ++GFAFV+F ++AE+A+ + G
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAETAMSQLEGVH 781
Query: 283 FGKRPIAVDWA 293
R + + +A
Sbjct: 782 LLGRRLVMQYA 792
Score = 39.7 bits (91), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 219 LIIRNIPFKAKVNEIKDMFSP-----VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
+ ++N+ F V + D+F P V V P N+ LS GF FV+F K A
Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678
Query: 274 AIQKFNGQ 281
AI +G
Sbjct: 679 AISTLDGH 686
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMH-----RASLEQRR 56
V KK RGF +V+F +M++A A+ G + GR++ +++A +E+
Sbjct: 748 VPKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMT 807
Query: 57 SKVTQEVQAEDI 68
KV ++V +++
Sbjct: 808 KKVKKQVATQNL 819
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
K++I+N+PF+A +I+D+FS G + +V +P D ++GF FV+++ R+A+SA++
Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQSAMEA 778
Query: 278 FNGQKFGKRPIAVDWA 293
R + + W+
Sbjct: 779 LKHTHLLGRHLVLQWS 794
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L IRN+PF A +EI F G V V+IP + T SKG AFV F+ A +A +
Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374
Query: 278 FNGQKFGKRPIAVDWAVPKNIYSSGGA 304
+G F R + + AV K+ + G+
Sbjct: 375 KDGSTFQGRLLHLLPAVNKDALAETGS 401
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487
+FI NLPF +E+ F +FG V L + TK KG F+ F A AA A
Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAK 375
Query: 488 KTTSGLGIFLKGRQLTVLKALDK 510
G +GR L +L A++K
Sbjct: 376 D-----GSTFQGRLLHLLPAVNK 393
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQ 61
+ KK N RGFG+V+++ + +A A+E T + GR + V H AS Q++ + +
Sbjct: 750 LPKKFDNTTRGFGFVEYSTVREAQSAMEALKHTHLLGRHL-VLQWSHLASSTQQQVDMQR 808
Query: 62 EVQAEDIEKTMDN 74
+ T DN
Sbjct: 809 SKTKQHFVNTHDN 821
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 484
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 177 VLYTTVKSACASVALL-------HQKEIKGGTVWARQLGGEGSKTQK--WKLIIRNIPFK 227
V + T + A A +A + H+ ++K A Q G +K+ K K+I++N+PF+
Sbjct: 714 VEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFE 773
Query: 228 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287
A ++ ++F+ G + +V +P D ++GFAFV+F ++AE+A+ + +G R
Sbjct: 774 ATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQLHGVHLLGRR 832
Query: 288 IAVDW 292
+ + +
Sbjct: 833 LVMQY 837
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
Q +L +RNI + +K + + +FSP G + V++ +T TG SKGFA+V F ++A +
Sbjct: 342 NQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVN 401
Query: 274 AIQKFNGQKFGKRPIAV 290
A + + Q F R + +
Sbjct: 402 AYVELDKQIFQGRLLHI 418
Score = 39.3 bits (90), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 137/322 (42%), Gaps = 56/322 (17%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
++++N PF E+ +MF P G + + +P + A V+F A +A K
Sbjct: 534 ILVKNFPFGTTREELGEMFLPYGKLERLLMPP------AGTIAIVQFRDTTSARAAFTKL 587
Query: 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSG------SDDDLGDDDAETA 332
+ ++F I ++ PK+ ++ A + N + S +DL + + +
Sbjct: 588 SYKRFKDGIIYLERG-PKDCFTKPAEADDLINNTSAKEEENPVEVKPSSNDLMEANKDVT 646
Query: 333 SDDSNSSEKE--DLPSNADFDEEVDIA---RKVLNKLTSTTGSL--------------PS 373
SN+ +++ D P+ + F + ++ + + + ++ TG + +
Sbjct: 647 EGSSNAHDEDVIDGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKT 706
Query: 374 LSDDSALVK-GNKEQDS------DKTVNESAKV----SDVSKLNSSKSKPKSLKQTEGED 422
LS V+ KEQ + D TV + K+ S S +K KS K++
Sbjct: 707 LSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKS---- 762
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATA 482
I + NLPF+ ++V + F++FG++ S V V + K +G F++F + A
Sbjct: 763 ---GKIIVKNLPFEATRKDVFELFNSFGQLKS-VRVPKKFDKSARGFAFVEFLLPKEAEN 818
Query: 483 AVSASKTTSGLGIFLKGRQLTV 504
A+ G+ L GR+L +
Sbjct: 819 AMDQLH-----GVHLLGRRLVM 835
Score = 35.8 bits (81), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRAS 51
GFG+V+F E AN + +GT + G KI +K + +AS
Sbjct: 710 GFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQAS 749
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN---TDTGL--SKGFAFVK 264
EG KT+ K++++N+PF+A +++++FS G + ++ +P T TG ++GFAF++
Sbjct: 633 EGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLE 692
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
FT +A A++ R + + WA
Sbjct: 693 FTTHTEAARAMEALKHTHLLGRHLVLQWA 721
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 132/336 (39%), Gaps = 59/336 (17%)
Query: 186 CASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEI-KDMFSPVGLVW 244
C SVAL+ ++ W + G G K Q +LI N+P + K + SP L
Sbjct: 3 CRSVALVWRE-------W--KWRGVGDKRQS-RLIFLNLPSTLNPDTFRKTLLSPATLKS 52
Query: 245 NVYIPHNTDTGL--SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSG 302
TDT L + FAFV + +A+ + F+G Y+ G
Sbjct: 53 TTI----TDTKLVPKRRFAFVGYKDAEEAQKVKEWFDG-----------------TYAFG 91
Query: 303 GAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLN 362
G V D +G + G+ E S + + +E N E + + + V
Sbjct: 92 GGKVKVDFVKDEPLKTGDKLNRGEKSKEKRSKEGRDNVQEKQEPNKRLQEFMSVMKGVDP 151
Query: 363 KLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSD----------VSKLNSSKSKP 412
+ S P S +A +G K++ S K +S + + + + ++
Sbjct: 152 AMAS-----PEASTSTA--EGTKKEKSVKGKEKSEEPEEAEADDDDAAWLRRRQAALEGE 204
Query: 413 KSLKQTEGEDEL---QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT 469
S Q +++L + +F+ NL F +E + FS +G + + Q T P GT
Sbjct: 205 PSTPQLSADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGT 264
Query: 470 GFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505
FL+F E A AA A T IF +GR L VL
Sbjct: 265 AFLQFHNAEDALAAYKALDKT----IF-QGRLLHVL 295
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 29/263 (11%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RN+ F + FS G + ++P + TG G AF++F DA +A +
Sbjct: 222 RLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKA 281
Query: 278 FNGQKFGKRPIAVDWAVP-KNIYSSGGAAAG---VQNKGDGNSDSGSDDDLGDDDAETAS 333
+ F R + V +P + GAAAG V K G D G + DA+
Sbjct: 282 LDKTIFQGRLLHV---LPGRAKPGQEGAAAGSGVVDGKVLGKRDEGRGEVKSKVDAKRKQ 338
Query: 334 DDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTV 393
+ + L N+D +A V +++ + L + ++ VK + + +
Sbjct: 339 ESAKGVNWASLYMNSD-----AVAASVADRMGISKSELLNADSGNSAVKLALAETT--VI 391
Query: 394 NESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453
E+ K + + + +P+ + Q TI + N+P+ + + F+ G+
Sbjct: 392 EETKKYFEEAGIVLESLQPRVPRS-------QTTILVKNIPYGTSIQSLTDLFAPHGK-- 442
Query: 454 SFVPVLHQVTKRPKGT-GFLKFK 475
L +V P GT G ++F+
Sbjct: 443 -----LTRVLLPPAGTLGVVEFE 460
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 419 EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF------VPVLHQVTKRPKGTGFL 472
EG + + NLPF+ ++V++ FSA+G++ S VP + +G FL
Sbjct: 633 EGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPT-STGAQSTRGFAFL 691
Query: 473 KFKTVEAATAAVSASKTTSGLGIFL 497
+F T A A+ A K T LG L
Sbjct: 692 EFTTHTEAARAMEALKHTHLLGRHL 716
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN---TDTGL--SKGFAFVK 264
EG KT+ K++++N+PF+A +++++FS G + ++ +P T TG ++GFAF++
Sbjct: 633 EGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLE 692
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
FT +A A++ R + + WA
Sbjct: 693 FTTHTEAARAMEALKHTHLLGRHLVLQWA 721
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 132/336 (39%), Gaps = 59/336 (17%)
Query: 186 CASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEI-KDMFSPVGLVW 244
C SVAL+ ++ W + G G K Q +LI N+P + K + SP L
Sbjct: 3 CRSVALVWRE-------W--KWRGVGDKRQS-RLIFLNLPSTLNPDTFRKTLLSPATLKS 52
Query: 245 NVYIPHNTDTGL--SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSG 302
TDT L + FAFV + +A+ + F+G Y+ G
Sbjct: 53 TTI----TDTKLVPKRRFAFVGYKDAEEAQKVKEWFDG-----------------TYAFG 91
Query: 303 GAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLN 362
G V D +G + G+ E S + + +E N E + + + V
Sbjct: 92 GGKVKVDFVKDEPLKTGDKLNRGEKSKEKRSKEGRDNVQEKQEPNKRLQEFMSVMKGVDP 151
Query: 363 KLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSD----------VSKLNSSKSKP 412
+ S P S +A +G K++ S K +S + + + + ++
Sbjct: 152 AMAS-----PEASTSTA--EGTKKEKSVKGKEKSEEPEEAEADDDDAAWLRRRQAALEGE 204
Query: 413 KSLKQTEGEDEL---QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT 469
S Q +++L + +F+ NL F +E + FS +G + + Q T P GT
Sbjct: 205 PSTPQLSADEQLILSTSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGT 264
Query: 470 GFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505
FL+F E A AA A T IF +GR L VL
Sbjct: 265 AFLQFHNAEDALAAYKALDKT----IF-QGRLLHVL 295
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 108/263 (41%), Gaps = 29/263 (11%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L +RN+ F + FS G + ++P + TG G AF++F DA +A +
Sbjct: 222 RLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKA 281
Query: 278 FNGQKFGKRPIAVDWAVP-KNIYSSGGAAAG---VQNKGDGNSDSGSDDDLGDDDAETAS 333
+ F R + V +P + GAAAG V K G D G + DA+
Sbjct: 282 LDKTIFQGRLLHV---LPGRAKPGQEGAAAGSGVVDGKVLGKRDEGRGEVKSKVDAKRKQ 338
Query: 334 DDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTV 393
+ + L N+D +A V +++ + L + ++ VK + + +
Sbjct: 339 ESAKGVNWASLYMNSD-----AVAASVADRMGISKSELLNADSGNSAVKLALAETT--VI 391
Query: 394 NESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453
E+ K + + + +P+ + Q TI + N+P+ + + F+ G+
Sbjct: 392 EETKKYFEEAGIVLESLQPRVPRS-------QTTILVKNIPYGTSIQSLTDLFAPHGK-- 442
Query: 454 SFVPVLHQVTKRPKGT-GFLKFK 475
L +V P GT G ++F+
Sbjct: 443 -----LTRVLLPPAGTLGVVEFE 460
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 419 EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF------VPVLHQVTKRPKGTGFL 472
EG + + NLPF+ ++V++ FSA+G++ S VP + +G FL
Sbjct: 633 EGGKTKSTKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPT-STGAQSTRGFAFL 691
Query: 473 KFKTVEAATAAVSASKTTSGLGIFL 497
+F T A A+ A K T LG L
Sbjct: 692 EFTTHTEAARAMEALKHTHLLGRHL 716
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + NIP++A ++KD+FS VG V + + ++ +TG KG+ F ++ + A SA++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 279 NGQKFGKRPIAVDWA 293
NG++F R + VD A
Sbjct: 78 NGREFSGRALRVDNA 92
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 484
++F+ N+P++ E++K FS G VVSF V + T +PKG GF +++ E A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 208 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
GG+ +K K+II+N+PF++ + EI+ +F+ G + +V IP + G +GF FV+F
Sbjct: 787 GGQPNKPSS-KIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGG-HRGFGFVEFLT 844
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDWA 293
+ +A++A++ F R + + +A
Sbjct: 845 EEEAKNAMEALGNSHFYGRHLVLQYA 870
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
++ +RN+ + K +++ +FS G + ++IP + D+ SKG AF+ + +A A+
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 278 FNGQKFGKRPIAV 290
+G+ F R I V
Sbjct: 422 MDGKVFQGRLIHV 434
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 261
V + +G +GSK L+++NIPFK + +E+ ++FS G + V + ++ A
Sbjct: 538 VIIQDIGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL------SPARTIA 591
Query: 262 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIY 299
+++ +A+ + KF P+ ++WA P+ ++
Sbjct: 592 LIEYIHPNEAKVGFKNLAYSKFHHVPLYLEWA-PEGVF 628
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 24/136 (17%)
Query: 400 SDVSKLNSSKSKPKSLKQTEGEDELQ-----NTIFICNLPFDLDNEEVKQRFSAFGEVVS 454
++V ++N + P++ KQ+ + Q + I I NLPF+ +E+++ F+A+GE+ S
Sbjct: 764 TNVQEINKRRELPENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQS 823
Query: 455 FVPVLHQVTKRP----KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510
++ K+P +G GF++F T E A A+ A + GR L + A
Sbjct: 824 V-----RIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSH-----FYGRHLVLQYA--- 870
Query: 511 KLAHDKEIDKSKNETN 526
DK ID+ + + N
Sbjct: 871 --EQDKNIDELREKAN 884
Score = 40.0 bits (92), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVT 60
+ KK + HRGFG+V+F E+A A+E + GR + +++A ++++ R K
Sbjct: 826 IPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDKNIDELREKAN 884
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486
IF+ NL + E++++ FS FG++ +P+ + +K+ KG F+ + E A A++
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYD-SKKSKGIAFILYLIPENAVQALND 421
Query: 487 SKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETND 527
G +GR + VL K A K+ ++K+ N+
Sbjct: 422 MD-----GKVFQGRLIHVLPG---KAAPAKQFSENKDNNNN 454
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1
Length = 308
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 206 QLGGEG--SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263
++GG G S+ L + N+ A ++++++F G V VY+ + +TG+ KG+AFV
Sbjct: 212 KMGGLGGMSRDDLPTLRVTNLSEDADDDDLRELFMRFGRVVRVYVGRDRETGICKGYAFV 271
Query: 264 KFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296
F + DA+ A QK +G+ + ++ W++P+
Sbjct: 272 SFENREDADRARQKVDGRGYDNLILSCQWSLPR 304
>sp|Q0U6E7|EIF3G_PHANO Eukaryotic translation initiation factor 3 subunit G
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=TIF35 PE=3 SV=2
Length = 281
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%)
Query: 197 IKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGL 256
++G ++GG+ + L + N+ A+ +++DMFS G V V++ + +TG
Sbjct: 182 LRGRAGAGEKMGGKFDRDDSATLRVTNVSEFAEEQDLRDMFSRYGHVTRVFLAKDRETGR 241
Query: 257 SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
+KGFAFV + + DA A +K +G FG + V++A
Sbjct: 242 AKGFAFVSYADRTDAAKACEKMDGFGFGHLILRVEFA 278
>sp|A8NS61|EIF3G_BRUMA Eukaryotic translation initiation factor 3 subunit G OS=Brugia
malayi GN=Bm1_08615 PE=3 SV=1
Length = 287
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 208 GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267
GG ++++ + N+P + E++ +F VG V V+I + T KGFAFV F
Sbjct: 199 GGAERRSEENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTFEH 258
Query: 268 KRDAESAIQKFNGQKFGKRPIAVDW 292
+ E+AIQK NG K + V+W
Sbjct: 259 RSQTEAAIQKLNGYKLDHLVLKVEW 283
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAV 484
+NT + NLP + D E++ F G V + T +PKG F+ F+ AA+
Sbjct: 207 ENTCRVTNLPEECDEMELRALFGTVGTVNRVFIAKDKHTNKPKGFAFVTFEHRSQTEAAI 266
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 205 RQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264
R GG+ + L + N+ A+ E++DMF G V V++ + +TGL+KGFAF+
Sbjct: 196 RMGGGKFERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFIS 255
Query: 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWA 293
F + DA A +K +G F + V++A
Sbjct: 256 FQERSDAAKACEKMDGYGFKHLILRVEFA 284
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
+ + N+P+ + D+F+ +G V I + TG SKGF V+F + DA S+I+K
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 279 NGQKFGKRPIAVDWA 293
NG ++G RP+ + +A
Sbjct: 371 NGYRYGGRPLQLSYA 385
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G+ Q+ ++ + N+ ++ + E+K+ VG V N I N GLSKG A ++++
Sbjct: 69 GQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGLSKGCAIIEYSTA 127
Query: 269 RDAESAIQKFNGQKFGKRPIAV 290
+A +AI+ + QKF R + +
Sbjct: 128 EEARTAIKTLSNQKFMGRLVYI 149
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 122 RTVIIGGLLNADMAEEVHRLAGSIGTV--CSVTYPLPKEELEQHGLAQEGCKMDASAVLY 179
R V +G L E+ G +G V C + LP +GL++ GC + + Y
Sbjct: 77 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILN-LP------NGLSK-GCAI----IEY 124
Query: 180 TTVKSACASVALLHQKEIKGGTVWARQ------------------LGGEGSKTQKWKLII 221
+T + A ++ L ++ G V+ R+ G+ S+ + +L +
Sbjct: 125 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDR-QLFV 183
Query: 222 RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281
N+P+ + ++KD+F G V I N + G S+G V + ++A AIQ +
Sbjct: 184 GNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNT 242
Query: 282 KFGKRPIAV 290
F R + V
Sbjct: 243 DFMGRTLEV 251
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASL 52
+GFG VQF DA ++E NG GGR + + +A + L
Sbjct: 350 KGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYATPL 391
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ ++ + ++ +F G V +VYIP + T S+GFAFV+F KRDAE A+
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 279 NGQKFGKRPIAVDWA 293
+G R + V A
Sbjct: 76 DGAVLDGRELRVQMA 90
>sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1
Length = 174
Score = 54.3 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 209 GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268
G + W L + + +A ++ D F+ G + N+++ + TG KG+A V++
Sbjct: 65 GPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETY 124
Query: 269 RDAESAIQKFNGQKFGKRPIAVDW 292
++A++A++ NGQ+ +PI+VDW
Sbjct: 125 KEAQAAMEGLNGQELMGQPISVDW 148
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 177 VLYTTVKSACASVALLHQKEIKGGTV---WARQLGGEGSKTQK----WKLIIRNIPFKAK 229
V + T + A A ++ + I G + + + G GS+ +K K+I++N+PF+A
Sbjct: 691 VEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAKNGKIIVKNLPFEAT 750
Query: 230 VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280
++ ++F+ G + +V +P D ++GFAFV+F ++AE+A+ + G
Sbjct: 751 RKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQLQG 800
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 212 SKTQKW-KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270
+K QK +L +RNI + + ++ K +FSP G + V++ +T TG SKGFA+V F +
Sbjct: 319 AKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEE 378
Query: 271 AESAIQKFNGQKFGKRPIAV 290
A A + + Q F R + +
Sbjct: 379 AVQAYIELDKQIFQGRLLHI 398
Score = 39.7 bits (91), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 386 EQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGE---DELQNTIFICNLPFDLDNEEV 442
E D +K+ E A S L S SK K+ E E D +IFI NL F ++++
Sbjct: 598 EHDEEKSAKE-AGPSSADLLESVSSKKTEDKEDEDEQVVDGPTVSIFIKNLNFKTTSQQL 656
Query: 443 KQRFSAF-GEVVSFVPVLHQVTKRPK----GTGFLKFKTVEAATAAVSA 486
RF F G VV+ V ++ K G GF++F+T E ATA +SA
Sbjct: 657 TDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATAVISA 705
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487
I + NLPF+ ++V + F++FG++ S V V + K +G F++F + A A+
Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKS-VRVPKKFDKSARGFAFVEFVLPKEAENAMDQL 798
Query: 488 KTTSGLGIFLKGRQLTV 504
+ G+ L GR+L +
Sbjct: 799 Q-----GVHLLGRRLVM 810
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
+L + N+PF +++ ++F+ G V NV I ++ T S+GFAFV +A+ AI+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 278 FNGQKFGKRPIAVDWA-VPK 296
F+G + G R + V++ VP+
Sbjct: 175 FDGSQVGGRTVKVNFPEVPR 194
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGV 43
+V + ++ RGF +V +E+A A+ + +G+ VGGR + V
Sbjct: 145 IVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKV 187
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 166 AQEGCKM-DASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNI 224
A+E ++ D S V TVK V ++E+ + + +G KL + N+
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTY---QGFVDSPHKLYVANL 224
Query: 225 PFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284
+ ++D F+ + + ++ +G S+GF F+ F+ SA+ N +
Sbjct: 225 SWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELE 284
Query: 285 KRPIAVDWA 293
RP+ ++ A
Sbjct: 285 GRPLRLNVA 293
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273
++ KL + N+PF + +F G V V + ++ TG S+GF FV + K + E+
Sbjct: 84 SEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEA 143
Query: 274 AIQKFNGQKFGKRPIAVDWAVP----KNIYSSGGAAAGVQNKG---DGNSDSG 319
A Q+FNG + R I V+ A P + S GG G + G DGNS G
Sbjct: 144 AEQQFNGYEIDGRAIRVN-AGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFG 195
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAA 483
+F+ NLPF +D+ + F G V + ++T R +G GF+ T E AA
Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAA 144
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHR 49
+V + S RGFG+V ++ ++ N A++ NG + GR I V A R
Sbjct: 238 VVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ A+ E++DMF G V V++ + DTGL+KGFAF+ F + DA A K
Sbjct: 225 LRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKM 284
Query: 279 NGQKFGKRPIAVDWA 293
+G F + V++A
Sbjct: 285 DGWGFKHLILRVEFA 299
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 210 EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269
E S + KL + N+PF ++ +F G V V + ++ TG S+GF FV +
Sbjct: 84 EQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVS 143
Query: 270 DAESAIQKFNGQKFGKRPIAVDWAVP 295
+ E+A Q+FNG + RP+ V+ P
Sbjct: 144 EVEAAAQQFNGYELDGRPLRVNAGPP 169
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487
+F+ NLPF++D+ ++ Q F + G V + ++T R +G GF+ +V AA
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 488 KTTSGLGIFLKGRQLTV 504
G L GR L V
Sbjct: 153 N-----GYELDGRPLRV 164
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277
++ + N+ + ++ +FS G V + ++ D+G SKGF FV + ++ ++AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 278 FNGQKFGKRPIAV 290
+G R I V
Sbjct: 265 LDGADLDGRQIRV 277
Score = 32.7 bits (73), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVS 485
N +++ NL + +D+ ++ FS G+VV + + + R KG GF+ + + + A+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI- 262
Query: 486 ASKTTSGLGIFLKGRQLTVLKA 507
K+ G L GRQ+ V +A
Sbjct: 263 --KSLDGAD--LDGRQIRVSEA 280
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278
L + N+ F A + I ++F+ G V +V IP + +T KGF +V+F+ DA+ A+
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 279 NGQKFGKRPIAVDWAVPK 296
G+ RP+ +D++ P+
Sbjct: 329 QGEYIDNRPVRLDFSSPR 346
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATA 482
E +T+F+ NL F+ D + + + F+ GEVVS H T++PKG G+++F +E A
Sbjct: 264 EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKK 323
Query: 483 AVSA 486
A+ A
Sbjct: 324 ALDA 327
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRAS 51
+GFGYVQF+ MEDA +A++ G + R + + + R +
Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPN 348
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSK 58
++ ++G++ RG+GYV F A +A++ G + GR I + + + R+K
Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAK 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,913,231
Number of Sequences: 539616
Number of extensions: 10162202
Number of successful extensions: 47222
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 674
Number of HSP's that attempted gapping in prelim test: 34617
Number of HSP's gapped (non-prelim): 7026
length of query: 633
length of database: 191,569,459
effective HSP length: 124
effective length of query: 509
effective length of database: 124,657,075
effective search space: 63450451175
effective search space used: 63450451175
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)