Query 006726
Match_columns 633
No_of_seqs 497 out of 4201
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 13:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0127 Nucleolar protein fibr 100.0 5.5E-62 1.2E-66 484.7 35.1 451 121-622 5-490 (678)
2 TIGR01628 PABP-1234 polyadenyl 100.0 1.6E-49 3.4E-54 439.7 35.0 327 1-513 32-367 (562)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.1E-45 1.7E-49 380.2 35.8 344 121-511 3-350 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 8.8E-44 1.9E-48 393.8 37.6 325 123-624 2-339 (562)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.9E-42 1.9E-46 367.9 39.8 326 121-510 2-351 (481)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8E-41 1.7E-45 360.5 39.8 337 9-510 36-480 (481)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 1.8E-40 3.9E-45 353.1 32.3 301 120-600 57-364 (578)
8 KOG0145 RNA-binding protein EL 100.0 1.6E-40 3.5E-45 302.2 23.6 314 122-509 42-357 (360)
9 KOG0123 Polyadenylate-binding 100.0 1.5E-40 3.3E-45 339.3 22.7 312 2-511 31-350 (369)
10 KOG0117 Heterogeneous nuclear 100.0 9.7E-39 2.1E-43 312.3 28.2 249 119-513 81-334 (506)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.5E-37 1.4E-41 320.5 27.6 222 1-297 35-350 (352)
12 TIGR01622 SF-CC1 splicing fact 100.0 2.2E-35 4.9E-40 319.5 36.8 338 118-509 86-447 (457)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-34 3.9E-39 317.0 33.3 277 117-509 171-501 (509)
14 KOG0127 Nucleolar protein fibr 100.0 1.4E-35 3.1E-40 296.2 22.1 248 1-298 37-380 (678)
15 KOG0123 Polyadenylate-binding 100.0 6.4E-35 1.4E-39 297.9 24.3 315 123-624 3-324 (369)
16 KOG0145 RNA-binding protein EL 100.0 1.4E-34 2.9E-39 263.6 20.3 221 1-296 73-358 (360)
17 KOG0148 Apoptosis-promoting RN 100.0 1.2E-34 2.6E-39 266.1 20.0 234 120-512 5-240 (321)
18 TIGR01645 half-pint poly-U bin 100.0 7.2E-33 1.6E-37 295.2 35.7 170 119-297 105-285 (612)
19 KOG0110 RNA-binding protein (R 100.0 1E-34 2.2E-39 300.1 17.5 366 12-512 247-695 (725)
20 KOG0144 RNA-binding protein CU 100.0 1.5E-33 3.3E-38 274.5 22.6 371 121-511 34-505 (510)
21 KOG0117 Heterogeneous nuclear 100.0 1.5E-33 3.3E-38 276.0 21.2 211 1-299 115-334 (506)
22 TIGR01648 hnRNP-R-Q heterogene 100.0 7.1E-33 1.5E-37 295.2 26.1 208 1-297 90-308 (578)
23 TIGR01659 sex-lethal sex-letha 100.0 7.6E-31 1.6E-35 267.0 21.7 172 212-511 103-276 (346)
24 KOG0110 RNA-binding protein (R 100.0 1.8E-30 3.9E-35 268.8 23.9 272 216-623 385-667 (725)
25 TIGR01645 half-pint poly-U bin 100.0 1.3E-29 2.8E-34 270.3 21.5 181 214-511 105-285 (612)
26 TIGR01642 U2AF_lg U2 snRNP aux 100.0 8.9E-29 1.9E-33 271.9 24.5 246 3-295 215-501 (509)
27 TIGR01659 sex-lethal sex-letha 100.0 4.8E-29 1E-33 253.8 20.7 170 119-297 105-276 (346)
28 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-28 2.8E-33 266.7 23.9 180 213-509 86-265 (457)
29 KOG0131 Splicing factor 3b, su 99.9 3.1E-27 6.8E-32 205.3 12.0 174 212-512 5-179 (203)
30 KOG1190 Polypyrimidine tract-b 99.9 2.7E-25 5.9E-30 215.6 23.5 364 119-600 26-437 (492)
31 KOG0144 RNA-binding protein CU 99.9 1.7E-26 3.7E-31 225.5 13.4 174 213-514 31-210 (510)
32 KOG0147 Transcriptional coacti 99.9 2E-25 4.2E-30 225.7 17.4 327 117-508 175-526 (549)
33 KOG0148 Apoptosis-promoting RN 99.9 3.2E-25 7E-30 204.2 16.5 162 121-297 62-239 (321)
34 KOG0124 Polypyrimidine tract-b 99.9 1E-24 2.3E-29 208.1 19.4 166 122-296 114-290 (544)
35 KOG0131 Splicing factor 3b, su 99.9 8E-25 1.7E-29 190.4 12.0 168 121-297 9-178 (203)
36 KOG0146 RNA-binding protein ET 99.9 9.7E-24 2.1E-28 193.6 14.1 297 199-512 2-367 (371)
37 KOG4212 RNA-binding protein hn 99.9 4.3E-22 9.3E-27 194.6 26.1 164 119-293 42-291 (608)
38 KOG0124 Polypyrimidine tract-b 99.9 8.6E-23 1.9E-27 195.0 10.8 179 216-511 113-291 (544)
39 KOG1456 Heterogeneous nuclear 99.9 6.6E-20 1.4E-24 176.2 30.2 387 117-600 27-429 (494)
40 KOG0109 RNA-binding protein LA 99.9 2.2E-22 4.8E-27 187.4 10.9 149 217-511 3-151 (346)
41 KOG0109 RNA-binding protein LA 99.9 1.2E-21 2.6E-26 182.5 11.0 147 123-296 4-150 (346)
42 KOG1190 Polypyrimidine tract-b 99.8 2.7E-19 5.9E-24 174.1 23.8 271 123-509 152-490 (492)
43 KOG4211 Splicing factor hnRNP- 99.8 9E-19 1.9E-23 175.3 25.1 332 122-506 11-354 (510)
44 KOG0147 Transcriptional coacti 99.8 3.5E-20 7.6E-25 187.9 14.4 227 1-294 211-526 (549)
45 KOG4205 RNA-binding protein mu 99.8 3.8E-20 8.2E-25 182.4 11.6 176 215-514 5-180 (311)
46 KOG4212 RNA-binding protein hn 99.8 8.7E-18 1.9E-22 164.7 19.0 74 215-293 535-608 (608)
47 KOG0146 RNA-binding protein ET 99.8 1.3E-18 2.8E-23 160.1 11.3 172 117-298 15-367 (371)
48 KOG4205 RNA-binding protein mu 99.8 3.3E-18 7.2E-23 168.7 10.4 171 120-301 5-181 (311)
49 KOG4206 Spliceosomal protein s 99.7 9.3E-17 2E-21 146.5 17.9 209 214-508 7-220 (221)
50 KOG4211 Splicing factor hnRNP- 99.7 3E-16 6.4E-21 157.5 21.3 221 2-292 40-354 (510)
51 KOG0120 Splicing factor U2AF, 99.7 5E-17 1.1E-21 167.9 15.1 272 117-508 171-490 (500)
52 PLN03134 glycine-rich RNA-bind 99.7 7.6E-17 1.6E-21 143.7 11.9 85 423-512 32-116 (144)
53 KOG0105 Alternative splicing f 99.7 1.7E-16 3.6E-21 138.5 13.1 146 119-283 4-175 (241)
54 KOG1456 Heterogeneous nuclear 99.7 1.1E-14 2.5E-19 140.4 24.9 319 10-499 66-474 (494)
55 KOG1365 RNA-binding protein Fu 99.7 2.6E-15 5.7E-20 145.2 17.2 279 121-510 60-362 (508)
56 PLN03134 glycine-rich RNA-bind 99.7 9.1E-16 2E-20 136.8 11.6 85 213-297 31-115 (144)
57 KOG0105 Alternative splicing f 99.6 2E-14 4.4E-19 125.6 15.6 168 214-488 4-171 (241)
58 KOG1457 RNA binding protein (c 99.6 5.4E-14 1.2E-18 126.7 16.9 86 213-298 31-120 (284)
59 KOG4206 Spliceosomal protein s 99.6 3.1E-14 6.7E-19 130.1 15.0 157 121-294 9-220 (221)
60 KOG1548 Transcription elongati 99.6 1E-13 2.3E-18 133.1 18.4 201 213-510 131-352 (382)
61 PF00076 RRM_1: RNA recognitio 99.6 1.9E-14 4.2E-19 112.4 9.8 70 428-503 1-70 (70)
62 KOG0122 Translation initiation 99.6 1.3E-14 2.9E-19 132.9 9.3 82 424-510 188-269 (270)
63 KOG0122 Translation initiation 99.6 1.6E-14 3.4E-19 132.4 9.6 84 213-296 186-269 (270)
64 KOG0106 Alternative splicing f 99.5 2E-14 4.3E-19 133.0 7.8 167 217-507 2-168 (216)
65 KOG0149 Predicted RNA-binding 99.5 1.8E-14 3.9E-19 131.7 7.3 79 425-509 12-90 (247)
66 PF00076 RRM_1: RNA recognitio 99.5 6.2E-14 1.3E-18 109.5 9.4 70 219-289 1-70 (70)
67 KOG0120 Splicing factor U2AF, 99.5 7.7E-14 1.7E-18 144.5 12.7 236 7-295 219-491 (500)
68 KOG0114 Predicted RNA-binding 99.5 7.1E-14 1.5E-18 110.4 8.7 87 423-517 16-102 (124)
69 KOG1548 Transcription elongati 99.5 6.6E-13 1.4E-17 127.7 17.1 168 117-298 130-354 (382)
70 PF14259 RRM_6: RNA recognitio 99.5 1.2E-13 2.6E-18 107.9 9.8 70 428-503 1-70 (70)
71 KOG0125 Ataxin 2-binding prote 99.5 9.3E-14 2E-18 132.4 8.4 103 192-296 72-174 (376)
72 KOG0125 Ataxin 2-binding prote 99.5 2.7E-13 5.9E-18 129.3 10.0 81 423-510 94-174 (376)
73 PLN03120 nucleic acid binding 99.5 3.7E-13 8E-18 128.0 10.6 77 425-510 4-80 (260)
74 KOG0121 Nuclear cap-binding pr 99.5 1.6E-13 3.4E-18 112.9 7.0 81 424-509 35-115 (153)
75 KOG0121 Nuclear cap-binding pr 99.4 1.6E-13 3.4E-18 112.9 6.9 80 215-294 35-114 (153)
76 PF14259 RRM_6: RNA recognitio 99.4 6.2E-13 1.3E-17 103.8 9.9 70 219-289 1-70 (70)
77 KOG0106 Alternative splicing f 99.4 1.5E-13 3.2E-18 127.3 7.4 145 123-292 3-167 (216)
78 KOG1457 RNA binding protein (c 99.4 1.1E-12 2.4E-17 118.3 12.2 154 118-283 31-273 (284)
79 COG0724 RNA-binding proteins ( 99.4 1.4E-12 3.1E-17 132.0 14.2 80 216-295 115-194 (306)
80 KOG1365 RNA-binding protein Fu 99.4 1.1E-12 2.3E-17 127.4 12.0 226 6-294 97-360 (508)
81 KOG4207 Predicted splicing fac 99.4 2.6E-13 5.7E-18 121.0 7.2 84 421-509 9-92 (256)
82 KOG0149 Predicted RNA-binding 99.4 2.4E-13 5.2E-18 124.4 6.5 82 213-295 9-90 (247)
83 KOG0126 Predicted RNA-binding 99.4 4.5E-14 9.8E-19 123.3 0.8 81 425-510 35-115 (219)
84 PLN03213 repressor of silencin 99.4 1.1E-12 2.3E-17 131.1 9.9 79 423-510 8-88 (759)
85 KOG0130 RNA-binding protein RB 99.4 7.4E-13 1.6E-17 109.8 6.7 86 421-511 68-153 (170)
86 PLN03120 nucleic acid binding 99.4 1.9E-12 4E-17 123.3 10.1 77 216-296 4-80 (260)
87 KOG0113 U1 small nuclear ribon 99.4 2.2E-12 4.7E-17 121.7 9.9 83 423-510 99-181 (335)
88 PLN03121 nucleic acid binding 99.4 3.5E-12 7.6E-17 119.2 10.7 76 425-509 5-80 (243)
89 KOG0107 Alternative splicing f 99.3 1.7E-12 3.7E-17 113.1 7.1 79 214-297 8-86 (195)
90 KOG0126 Predicted RNA-binding 99.3 2.1E-13 4.5E-18 119.2 1.2 82 213-294 32-113 (219)
91 smart00362 RRM_2 RNA recogniti 99.3 6.5E-12 1.4E-16 98.1 9.5 72 427-505 1-72 (72)
92 KOG0108 mRNA cleavage and poly 99.3 4.2E-12 9.1E-17 131.2 9.9 84 426-514 19-102 (435)
93 KOG0114 Predicted RNA-binding 99.3 9.3E-12 2E-16 98.6 9.2 83 213-298 15-97 (124)
94 KOG0130 RNA-binding protein RB 99.3 3E-12 6.6E-17 106.2 6.8 85 212-296 68-152 (170)
95 KOG4207 Predicted splicing fac 99.3 2.8E-12 6E-17 114.5 6.7 83 212-294 9-91 (256)
96 smart00360 RRM RNA recognition 99.3 9.4E-12 2E-16 96.8 8.9 71 430-505 1-71 (71)
97 KOG0111 Cyclophilin-type pepti 99.3 1.3E-12 2.8E-17 117.5 4.3 83 424-511 9-91 (298)
98 PLN03213 repressor of silencin 99.3 5.9E-12 1.3E-16 125.9 9.4 80 213-296 7-88 (759)
99 KOG0111 Cyclophilin-type pepti 99.3 2.5E-12 5.5E-17 115.6 5.3 88 212-299 6-93 (298)
100 PLN03121 nucleic acid binding 99.3 1.2E-11 2.7E-16 115.6 10.0 77 215-295 4-80 (243)
101 KOG4307 RNA binding protein RB 99.3 3.2E-10 6.8E-15 118.2 21.0 78 424-506 865-943 (944)
102 COG0724 RNA-binding proteins ( 99.3 3.2E-11 6.9E-16 122.0 13.9 148 121-277 115-286 (306)
103 KOG0107 Alternative splicing f 99.3 9.6E-12 2.1E-16 108.5 7.9 76 425-510 10-85 (195)
104 KOG0113 U1 small nuclear ribon 99.3 1.2E-11 2.6E-16 116.8 8.6 83 212-294 97-179 (335)
105 smart00362 RRM_2 RNA recogniti 99.3 2.2E-11 4.7E-16 95.1 8.9 72 218-291 1-72 (72)
106 KOG0128 RNA-binding protein SA 99.2 2.4E-13 5.1E-18 145.1 -4.7 232 122-509 572-814 (881)
107 cd00590 RRM RRM (RNA recogniti 99.2 6.9E-11 1.5E-15 92.8 10.1 74 427-506 1-74 (74)
108 smart00360 RRM RNA recognition 99.2 3.2E-11 6.9E-16 93.8 7.8 71 221-291 1-71 (71)
109 KOG4307 RNA binding protein RB 99.2 2.4E-10 5.3E-15 119.0 14.9 206 216-512 311-516 (944)
110 smart00361 RRM_1 RNA recogniti 99.2 9.9E-11 2.2E-15 91.0 8.7 61 439-504 2-69 (70)
111 PF13893 RRM_5: RNA recognitio 99.2 9E-11 2E-15 86.9 7.8 56 442-507 1-56 (56)
112 cd00590 RRM RRM (RNA recogniti 99.2 1.8E-10 4E-15 90.3 9.5 74 218-292 1-74 (74)
113 KOG0108 mRNA cleavage and poly 99.2 5.6E-11 1.2E-15 123.0 8.1 81 217-297 19-99 (435)
114 PF13893 RRM_5: RNA recognitio 99.1 1.9E-10 4.1E-15 85.2 8.1 56 233-293 1-56 (56)
115 smart00361 RRM_1 RNA recogniti 99.1 2.5E-10 5.3E-15 88.7 7.7 61 230-290 2-69 (70)
116 KOG0129 Predicted RNA-binding 99.1 4.7E-09 1E-13 107.1 17.8 187 212-508 255-452 (520)
117 KOG4660 Protein Mei2, essentia 99.1 3E-09 6.5E-14 109.4 15.6 159 118-299 72-253 (549)
118 KOG0415 Predicted peptidyl pro 99.0 8E-10 1.7E-14 106.6 7.0 82 423-509 237-318 (479)
119 KOG4454 RNA binding protein (R 99.0 1.4E-10 3.1E-15 104.6 1.5 140 120-284 8-151 (267)
120 KOG0129 Predicted RNA-binding 99.0 1E-08 2.2E-13 104.7 14.7 157 117-277 255-432 (520)
121 KOG0128 RNA-binding protein SA 99.0 1E-10 2.3E-15 125.2 -0.4 199 13-295 616-814 (881)
122 KOG0226 RNA-binding proteins [ 98.9 9.6E-10 2.1E-14 101.8 4.2 82 425-511 190-271 (290)
123 KOG4210 Nuclear localization s 98.9 1.1E-09 2.3E-14 108.6 4.8 178 214-511 86-265 (285)
124 KOG4208 Nucleolar RNA-binding 98.9 5E-09 1.1E-13 94.5 7.9 82 424-510 48-130 (214)
125 KOG0415 Predicted peptidyl pro 98.9 2.4E-09 5.1E-14 103.4 6.1 87 212-298 235-321 (479)
126 KOG0153 Predicted RNA-binding 98.9 7.6E-09 1.6E-13 100.2 8.8 81 421-511 224-304 (377)
127 KOG4454 RNA binding protein (R 98.8 5.9E-10 1.3E-14 100.8 0.7 142 212-488 5-146 (267)
128 KOG4208 Nucleolar RNA-binding 98.8 9.2E-09 2E-13 92.9 8.1 85 212-296 45-130 (214)
129 KOG0151 Predicted splicing reg 98.8 1.6E-08 3.4E-13 106.2 10.7 179 422-633 171-356 (877)
130 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.4E-08 2.9E-13 103.8 8.6 85 421-510 401-485 (940)
131 KOG0112 Large RNA-binding prot 98.8 4.4E-09 9.5E-14 113.4 4.6 165 117-299 368-534 (975)
132 KOG4210 Nuclear localization s 98.8 8.5E-09 1.9E-13 102.2 5.6 169 119-297 86-265 (285)
133 KOG0132 RNA polymerase II C-te 98.8 1.4E-08 3.1E-13 107.8 7.3 79 423-512 419-497 (894)
134 KOG0153 Predicted RNA-binding 98.7 3.5E-08 7.7E-13 95.7 8.1 78 212-295 224-302 (377)
135 KOG0132 RNA polymerase II C-te 98.7 2.5E-08 5.4E-13 106.0 7.6 79 216-300 421-499 (894)
136 KOG0226 RNA-binding proteins [ 98.6 3.5E-08 7.7E-13 91.6 5.0 160 124-293 99-267 (290)
137 KOG4661 Hsp27-ERE-TATA-binding 98.6 9.3E-08 2E-12 97.8 7.4 83 214-296 403-485 (940)
138 KOG0533 RRM motif-containing p 98.6 2.1E-07 4.6E-12 88.7 8.6 83 425-513 83-165 (243)
139 PF04059 RRM_2: RNA recognitio 98.6 4.6E-07 1E-11 73.8 9.0 78 217-294 2-85 (97)
140 PF04059 RRM_2: RNA recognitio 98.6 4.7E-07 1E-11 73.7 9.1 79 426-509 2-86 (97)
141 KOG0116 RasGAP SH3 binding pro 98.5 2.2E-07 4.8E-12 95.9 7.5 80 424-509 287-366 (419)
142 KOG0112 Large RNA-binding prot 98.5 1E-07 2.3E-12 103.1 4.0 160 214-510 370-531 (975)
143 KOG0533 RRM motif-containing p 98.4 8.7E-07 1.9E-11 84.6 8.4 85 213-298 80-164 (243)
144 KOG0116 RasGAP SH3 binding pro 98.3 1.3E-06 2.7E-11 90.4 6.4 79 216-295 288-366 (419)
145 KOG4676 Splicing factor, argin 98.2 1E-06 2.3E-11 86.7 4.7 196 218-488 9-210 (479)
146 KOG4209 Splicing factor RNPS1, 98.2 1.6E-06 3.5E-11 83.2 5.7 80 425-510 101-180 (231)
147 KOG4209 Splicing factor RNPS1, 98.2 2.1E-06 4.5E-11 82.4 6.4 84 212-296 97-180 (231)
148 KOG0151 Predicted splicing reg 98.2 3.1E-06 6.7E-11 89.4 7.3 83 213-295 171-256 (877)
149 KOG4660 Protein Mei2, essentia 98.2 1.6E-06 3.5E-11 89.7 4.3 72 422-503 72-143 (549)
150 KOG2193 IGF-II mRNA-binding pr 98.1 2E-07 4.4E-12 92.3 -2.9 156 217-512 2-159 (584)
151 PF11608 Limkain-b1: Limkain b 98.1 9.3E-06 2E-10 62.6 6.7 68 217-294 3-75 (90)
152 PF08777 RRM_3: RNA binding mo 98.0 6.5E-06 1.4E-10 68.9 5.2 77 425-507 1-77 (105)
153 PF11608 Limkain-b1: Limkain b 98.0 2.2E-05 4.8E-10 60.6 6.3 68 426-508 3-75 (90)
154 KOG4676 Splicing factor, argin 97.7 1.6E-05 3.5E-10 78.5 2.9 150 123-284 9-214 (479)
155 KOG1995 Conserved Zn-finger pr 97.7 2.6E-05 5.6E-10 76.9 3.5 82 425-511 66-155 (351)
156 KOG2193 IGF-II mRNA-binding pr 97.7 3.5E-06 7.6E-11 83.7 -2.7 151 123-293 3-154 (584)
157 PF08777 RRM_3: RNA binding mo 97.5 0.00029 6.4E-09 58.9 6.1 70 217-292 2-76 (105)
158 COG5175 MOT2 Transcriptional r 97.4 0.00028 6E-09 68.5 6.6 82 215-296 113-203 (480)
159 KOG0115 RNA-binding protein p5 97.4 0.00028 6.1E-09 66.3 5.8 80 427-508 33-112 (275)
160 COG5175 MOT2 Transcriptional r 97.4 0.00037 8E-09 67.7 6.7 81 425-510 114-203 (480)
161 KOG1995 Conserved Zn-finger pr 97.3 0.00022 4.9E-09 70.5 4.3 85 213-297 63-155 (351)
162 KOG0115 RNA-binding protein p5 97.2 0.00075 1.6E-08 63.6 6.2 63 123-195 33-95 (275)
163 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0016 3.6E-08 46.9 5.5 52 122-189 2-53 (53)
164 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0012 2.5E-08 47.7 4.7 52 217-275 2-53 (53)
165 KOG2314 Translation initiation 97.0 0.0024 5.2E-08 66.5 8.0 81 214-295 56-143 (698)
166 KOG2314 Translation initiation 96.9 0.0025 5.5E-08 66.4 7.9 79 423-507 56-141 (698)
167 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0026 5.7E-08 52.4 6.4 78 215-294 5-90 (100)
168 KOG3152 TBP-binding protein, a 96.8 0.00078 1.7E-08 63.4 2.5 72 425-501 74-157 (278)
169 KOG3152 TBP-binding protein, a 96.8 0.00086 1.9E-08 63.1 2.7 73 215-287 73-157 (278)
170 KOG4849 mRNA cleavage factor I 96.7 0.0012 2.6E-08 64.5 3.3 80 214-293 78-159 (498)
171 PF08675 RNA_bind: RNA binding 96.7 0.0086 1.9E-07 46.6 6.9 60 212-280 5-64 (87)
172 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.014 3.1E-07 48.0 8.1 77 425-508 6-90 (100)
173 KOG1855 Predicted RNA-binding 96.4 0.0032 7E-08 63.5 4.0 65 424-488 230-307 (484)
174 KOG2202 U2 snRNP splicing fact 96.4 0.0014 3E-08 62.0 1.2 63 231-294 83-146 (260)
175 KOG2202 U2 snRNP splicing fact 96.2 0.0019 4.2E-08 61.0 1.5 63 440-508 83-146 (260)
176 KOG1996 mRNA splicing factor [ 96.2 0.011 2.4E-07 56.7 6.2 66 230-295 300-366 (378)
177 KOG1996 mRNA splicing factor [ 96.1 0.017 3.6E-07 55.5 7.0 78 426-508 282-365 (378)
178 KOG1855 Predicted RNA-binding 96.0 0.0076 1.6E-07 61.0 4.7 78 214-291 229-319 (484)
179 KOG4849 mRNA cleavage factor I 95.9 0.012 2.7E-07 57.6 5.3 79 425-508 80-160 (498)
180 PF08952 DUF1866: Domain of un 95.9 0.04 8.6E-07 48.3 7.7 74 214-296 25-107 (146)
181 PF08675 RNA_bind: RNA binding 95.5 0.069 1.5E-06 41.7 6.8 54 426-488 10-63 (87)
182 PF08952 DUF1866: Domain of un 95.1 0.082 1.8E-06 46.3 7.1 56 440-509 51-106 (146)
183 KOG2416 Acinus (induces apopto 95.1 0.023 5E-07 59.9 4.3 79 212-296 440-522 (718)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 94.9 0.1 2.2E-06 48.3 7.5 82 214-295 5-97 (176)
185 PF10309 DUF2414: Protein of u 94.7 0.17 3.8E-06 37.4 6.9 53 426-487 6-62 (62)
186 PF15023 DUF4523: Protein of u 94.7 0.12 2.6E-06 44.6 6.7 73 423-508 84-160 (166)
187 PF10309 DUF2414: Protein of u 94.0 0.22 4.8E-06 36.9 6.1 54 216-278 5-62 (62)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 93.8 0.091 2E-06 48.6 4.8 80 425-509 7-97 (176)
189 KOG2416 Acinus (induces apopto 93.6 0.07 1.5E-06 56.4 3.9 79 421-510 440-522 (718)
190 PF15023 DUF4523: Protein of u 92.3 0.61 1.3E-05 40.4 7.1 75 212-294 82-160 (166)
191 KOG2068 MOT2 transcription fac 92.3 0.067 1.4E-06 53.1 1.6 82 215-296 76-163 (327)
192 PF04847 Calcipressin: Calcipr 92.2 0.3 6.4E-06 45.4 5.6 62 229-296 8-71 (184)
193 KOG4285 Mitotic phosphoprotein 92.2 0.49 1.1E-05 46.1 7.1 74 216-297 197-271 (350)
194 KOG2068 MOT2 transcription fac 92.1 0.045 9.7E-07 54.3 0.2 82 426-512 78-165 (327)
195 PF07576 BRAP2: BRCA1-associat 91.5 1.8 3.9E-05 36.5 9.1 65 218-284 15-80 (110)
196 KOG2591 c-Mpl binding protein, 91.1 0.98 2.1E-05 47.8 8.4 92 186-290 151-246 (684)
197 PF07576 BRAP2: BRCA1-associat 90.9 2.2 4.8E-05 35.9 9.0 65 427-498 15-80 (110)
198 PF11767 SET_assoc: Histone ly 90.6 1.5 3.2E-05 33.1 6.9 55 436-504 11-65 (66)
199 PF11767 SET_assoc: Histone ly 90.1 1.2 2.5E-05 33.7 5.9 55 227-290 11-65 (66)
200 KOG2135 Proteins containing th 88.9 0.23 5E-06 51.3 1.9 75 216-297 372-447 (526)
201 KOG2135 Proteins containing th 88.5 0.33 7.1E-06 50.2 2.7 75 424-510 371-446 (526)
202 KOG2591 c-Mpl binding protein, 86.8 1.7 3.7E-05 46.0 6.7 68 122-205 176-247 (684)
203 KOG2253 U1 snRNP complex, subu 84.6 0.82 1.8E-05 49.5 3.3 71 422-506 37-107 (668)
204 KOG4285 Mitotic phosphoprotein 84.0 2.4 5.1E-05 41.6 5.8 74 426-512 198-272 (350)
205 KOG4574 RNA-binding protein (c 83.3 0.78 1.7E-05 51.0 2.5 78 219-302 301-380 (1007)
206 PF04847 Calcipressin: Calcipr 82.6 4 8.6E-05 38.0 6.6 63 438-509 8-70 (184)
207 KOG0804 Cytoplasmic Zn-finger 82.4 4.6 0.0001 41.9 7.4 67 425-498 74-141 (493)
208 PF07292 NID: Nmi/IFP 35 domai 82.3 2.3 5E-05 34.1 4.2 64 175-238 1-74 (88)
209 KOG0804 Cytoplasmic Zn-finger 81.0 5.9 0.00013 41.2 7.6 67 216-284 74-141 (493)
210 KOG2253 U1 snRNP complex, subu 81.0 1.2 2.5E-05 48.4 2.8 72 212-292 36-107 (668)
211 PF07292 NID: Nmi/IFP 35 domai 80.0 3.1 6.6E-05 33.4 4.2 33 14-46 1-34 (88)
212 PF03880 DbpA: DbpA RNA bindin 77.0 11 0.00024 29.1 6.5 58 227-293 12-74 (74)
213 PF03880 DbpA: DbpA RNA bindin 75.4 3.7 8E-05 31.8 3.4 34 12-46 41-74 (74)
214 KOG4574 RNA-binding protein (c 75.4 1.8 4E-05 48.2 2.3 75 427-512 300-376 (1007)
215 PHA01632 hypothetical protein 67.1 8.9 0.00019 27.2 3.3 40 580-621 19-58 (64)
216 KOG4019 Calcineurin-mediated s 62.3 7.8 0.00017 35.3 3.0 75 217-297 11-91 (193)
217 KOG2318 Uncharacterized conser 61.5 53 0.0012 35.6 9.4 97 118-229 171-310 (650)
218 KOG2318 Uncharacterized conser 60.6 41 0.00089 36.4 8.4 81 422-507 171-305 (650)
219 KOG2891 Surface glycoprotein [ 53.7 15 0.00033 35.4 3.6 36 425-460 149-196 (445)
220 PF14111 DUF4283: Domain of un 52.1 19 0.00042 32.1 4.0 32 426-457 105-137 (153)
221 PF03468 XS: XS domain; Inter 51.9 17 0.00037 31.0 3.3 53 426-481 9-70 (116)
222 PF14111 DUF4283: Domain of un 48.3 23 0.0005 31.6 3.9 77 172-249 55-138 (153)
223 KOG4019 Calcineurin-mediated s 48.3 14 0.00031 33.6 2.4 75 425-510 10-90 (193)
224 TIGR02542 B_forsyth_147 Bacter 43.5 37 0.0008 28.4 3.8 45 224-268 82-129 (145)
225 KOG4410 5-formyltetrahydrofola 43.1 76 0.0017 31.1 6.5 48 120-182 329-377 (396)
226 KOG4483 Uncharacterized conser 42.6 70 0.0015 32.9 6.4 59 421-486 387-446 (528)
227 PF10567 Nab6_mRNP_bdg: RNA-re 42.0 45 0.00098 33.0 4.9 81 425-508 15-106 (309)
228 PF07530 PRE_C2HC: Associated 40.3 55 0.0012 24.9 4.2 63 440-510 2-65 (68)
229 KOG2891 Surface glycoprotein [ 37.9 24 0.00052 34.2 2.3 76 121-196 149-246 (445)
230 smart00596 PRE_C2HC PRE_C2HC d 37.1 60 0.0013 24.7 3.8 62 440-509 2-64 (69)
231 KOG4365 Uncharacterized conser 36.4 5.7 0.00012 41.0 -2.2 78 426-509 4-81 (572)
232 PF15513 DUF4651: Domain of un 36.1 81 0.0018 23.4 4.2 18 440-457 9-26 (62)
233 PF03468 XS: XS domain; Inter 35.0 36 0.00078 29.0 2.7 56 218-276 10-75 (116)
234 KOG4483 Uncharacterized conser 33.5 63 0.0014 33.3 4.5 56 215-277 390-446 (528)
235 PF10567 Nab6_mRNP_bdg: RNA-re 32.2 73 0.0016 31.6 4.6 83 212-294 11-106 (309)
236 PF02714 DUF221: Domain of unk 30.1 77 0.0017 32.4 4.8 31 14-46 1-31 (325)
237 PRK14548 50S ribosomal protein 28.7 1.4E+02 0.0029 23.9 4.8 56 219-277 23-80 (84)
238 KOG2295 C2H2 Zn-finger protein 28.3 9.3 0.0002 40.8 -2.3 71 215-285 230-300 (648)
239 TIGR03636 L23_arch archaeal ri 26.5 1.7E+02 0.0037 22.9 4.9 56 219-277 16-73 (77)
240 KOG2295 C2H2 Zn-finger protein 24.7 11 0.00023 40.4 -2.6 64 425-488 231-294 (648)
241 KOG4410 5-formyltetrahydrofola 24.6 87 0.0019 30.7 3.6 49 216-269 330-378 (396)
242 KOG4365 Uncharacterized conser 24.4 17 0.00036 37.7 -1.2 78 217-295 4-81 (572)
243 PF15513 DUF4651: Domain of un 23.1 1.4E+02 0.0031 22.2 3.6 18 231-248 9-26 (62)
244 KOG1295 Nonsense-mediated deca 22.3 1E+02 0.0022 31.8 3.8 68 215-283 6-77 (376)
245 COG5193 LHP1 La protein, small 21.3 42 0.0009 34.7 0.9 64 425-488 174-247 (438)
246 PF02714 DUF221: Domain of unk 21.1 81 0.0018 32.2 3.0 35 470-511 1-35 (325)
No 1
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.5e-62 Score=484.65 Aligned_cols=451 Identities=36% Similarity=0.513 Sum_probs=351.1
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
+.||||++||++++.++|.++|+.+|+|..+.+..++. .+.++|||||.|.-.+|++.|++..++..+.|+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~g---------s~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr 75 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKG---------SSEKRGFGFVTFAMEEDVQRALAETEQSKFEGR 75 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCC---------cccccCccceeeehHhHHHHHHHHhhcCcccce
Confidence 47999999999999999999999999999999886654 357899999999999999999999999999999
Q ss_pred EEEEccCCCC------------------------CC--CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC
Q 006726 201 TVWARQLGGE------------------------GS--KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT 254 (633)
Q Consensus 201 ~i~v~~~~~~------------------------~~--~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 254 (633)
.|.|.+.... .. ..+.++|+|+|||+.+...+|+.+|+.||.|..|.||+....
T Consensus 76 ~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg 155 (678)
T KOG0127|consen 76 ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG 155 (678)
T ss_pred ecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC
Confidence 9987532210 01 233789999999999999999999999999999999987654
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCC-CCCCccccC-
Q 006726 255 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDD-LGDDDAETA- 332 (633)
Q Consensus 255 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 332 (633)
+ -.|||||+|....+|..||+.+||..|+||+|.|.||.++..|.......+.. .........+.+ ..++.....
T Consensus 156 k-lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s--~Kk~~~eEed~e~~~d~~~~~~~ 232 (678)
T KOG0127|consen 156 K-LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQS--LKKAVKEEEDKEADEDDGKDFDE 232 (678)
T ss_pred C-ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhh--hhhccchhhhcccccccccccch
Confidence 4 45999999999999999999999999999999999999999887655332110 000000000000 000000000
Q ss_pred ---CCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccc---cccccccc
Q 006726 333 ---SDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAK---VSDVSKLN 406 (633)
Q Consensus 333 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 406 (633)
..++++++..++... +..+.+..+.+..... .++..+.
T Consensus 233 Ed~e~d~edeEe~D~~se-----------------------------------~~ee~~~~Eee~~~vDd~e~S~~~~~- 276 (678)
T KOG0127|consen 233 EDGEEDSEDEEETDGNSE-----------------------------------AFEEGEESEEEEDDVDDEESSGKKES- 276 (678)
T ss_pred hcccccccccccccccch-----------------------------------hhhccccccccccccccccccccCcc-
Confidence 001111110011000 0000000000000000 0000000
Q ss_pred cCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 006726 407 SSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (633)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ 486 (633)
.+ ....+....+...+.+|||+||||++|+++|.++|++||.|.++.|+.++.|+.++|.|||.|.++.+|++||.+
T Consensus 277 -~k--~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 277 -DK--KAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred -cc--hhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 00 000111123566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-eEEcCeEEEEEEccChhhhchhhhhhccccccccccccccccCcccCCCCcCCCCChhHHHHHHHHHHHHH
Q 006726 487 SKTTSGLG-IFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKM 565 (633)
Q Consensus 487 ln~~~~~g-~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 565 (633)
.....+.| ..|.||.|.|..|+.++++...++.+..+...+++||||.++|.|..+++++.++|..||.+|++..+.+.
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 85444445 99999999999999999999998887778888999999999999999999999999999999999999999
Q ss_pred hhcCCCCCcccCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcccCcceeeeeeeccc
Q 006726 566 TKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQVCYLFSF 622 (633)
Q Consensus 566 ~~~~~~~~~~s~~~l~i~NlP~~~te~~l~~~f~~~~~~~~~~~~~~~~~v~~~~~~ 622 (633)
++++||++|+|.|+|+|+|||..++...|+.|...|+..+++++...++++.++...
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~ 490 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEE 490 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhh
Confidence 999999999999999999999999999999999999999999999999999888763
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.6e-49 Score=439.71 Aligned_cols=327 Identities=22% Similarity=0.338 Sum_probs=274.8
Q ss_pred CcccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccc
Q 006726 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (633)
Q Consensus 1 iv~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (633)
|++|+.|++++|||||+|.+.++|++||+.+|+..|.|++|+|.|+...+.. +
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~--~------------------------- 84 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL--R------------------------- 84 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc--c-------------------------
Confidence 4688999999999999999999999999999999999999999998432110 0
Q ss_pred ccccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhh
Q 006726 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (633)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~ 160 (633)
.....+|||+|||.++++++|+++|+.||.|.+|.++.+.
T Consensus 85 -------------------------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~--- 124 (562)
T TIGR01628 85 -------------------------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE--- 124 (562)
T ss_pred -------------------------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC---
Confidence 0123469999999999999999999999999999987653
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCC-----CCCCCCCEEEEcCCCCCCCHHHHHH
Q 006726 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE-----GSKTQKWKLIIRNIPFKAKVNEIKD 235 (633)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~-----~~~~~~~~l~v~nlp~~~t~~~l~~ 235 (633)
.|+++|||||+|.+.++|..|+..+||..+.|+.|.+...... ......++|||+|||.++|+++|++
T Consensus 125 -------~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 125 -------NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred -------CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 4788999999999999999999999999999999988543221 1234567899999999999999999
Q ss_pred hhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC----CeeEEEEEecCCCcccCCCccccccCC
Q 006726 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAVDWAVPKNIYSSGGAAAGVQNK 311 (633)
Q Consensus 236 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~ 311 (633)
+|+.||.|.++.++++. +|.++|||||.|.+.++|.+|++.|+|..+. |+.|.|.++..+.......
T Consensus 198 ~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~-------- 268 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAEL-------- 268 (562)
T ss_pred HHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHH--------
Confidence 99999999999999874 7889999999999999999999999999999 9999999876543211000
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcch
Q 006726 312 GDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDK 391 (633)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (633)
.........
T Consensus 269 ----------------------------------------------~~~~~~~~~------------------------- 277 (562)
T TIGR01628 269 ----------------------------------------------RRKFEELQQ------------------------- 277 (562)
T ss_pred ----------------------------------------------HhhHHhhhh-------------------------
Confidence 000000000
Q ss_pred hhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEE
Q 006726 392 TVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGF 471 (633)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~af 471 (633)
.......+++|||+|||+.+|+++|+++|++||.|.+|+++.+ .+|.++||||
T Consensus 278 --------------------------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gf 330 (562)
T TIGR01628 278 --------------------------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGF 330 (562)
T ss_pred --------------------------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEE
Confidence 0001223579999999999999999999999999999999999 5899999999
Q ss_pred EEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhh
Q 006726 472 LKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (633)
Q Consensus 472 V~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~ 513 (633)
|+|.+.++|.+|+..|| |..|+|++|.|.+|..++..
T Consensus 331 V~f~~~~~A~~A~~~~~-----g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 331 VCFSNPEEANRAVTEMH-----GRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EEeCCHHHHHHHHHHhc-----CCeeCCceeEEEeccCcHHH
Confidence 99999999999999999 99999999999999987654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=8.1e-45 Score=380.24 Aligned_cols=344 Identities=22% Similarity=0.268 Sum_probs=238.2
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
..+|||+|||..+++++|+++|++||+|.+|+++.++. .|+++|||||+|.+.++|..|+..|||..+.|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~---------~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~ 73 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV---------TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK 73 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC---------CCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence 35799999999999999999999999999999988764 488999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 006726 201 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (633)
Q Consensus 201 ~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 280 (633)
.|.|....+.......++|||+|||..+++++|+.+|++||.|..+.++.+..++.++|||||+|.+.++|..|++.|||
T Consensus 74 ~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 74 TIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 99997766555556778999999999999999999999999999999999887889999999999999999999999999
Q ss_pred ceeCC--eeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCC-CCCCccccCCCCCcCchHHHHHH
Q 006726 281 QKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASD-DSNSSEKEDLPSNADFDEEVDIA 357 (633)
Q Consensus 281 ~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 357 (633)
..+.| .+|.|.|+........................... ......+... ..........+....+.. ...
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 227 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVP----LSTILTAAGIGPMHHAAARFRPSAGDFTA--VLA 227 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCC----ccccccccCCCCccCcccccccCcchhhh--hhh
Confidence 99876 67888888654321111000000000000000000 0000000000 000000000000000000 000
Q ss_pred HHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCC-CcccCCCCCCCCcEEEecCCCCC
Q 006726 358 RKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPK-SLKQTEGEDELQNTIFICNLPFD 436 (633)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lfV~nLp~~ 436 (633)
...... ..+..... . ....+......... ...........+.+|||+|||++
T Consensus 228 ~~~~~~------~~~~~~~~---~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~ 280 (352)
T TIGR01661 228 HQQQQH------AVAQQHAA---Q------------------RASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD 280 (352)
T ss_pred hhhhhc------cccccccc---c------------------cCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCC
Confidence 000000 00000000 0 00000000000000 00000012344668999999999
Q ss_pred CCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 437 LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 437 ~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
+++++|+++|++||.|.+|+|+.|..+|.++|||||.|.+.++|.+|+..|| |..|+||+|+|.|+.+|.
T Consensus 281 ~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln-----G~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 281 TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN-----GYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEEccCCC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999998764
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.8e-44 Score=393.80 Aligned_cols=325 Identities=18% Similarity=0.269 Sum_probs=262.9
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i 202 (633)
+|||+|||+++|+++|+++|++||.|.+|+++.+.. .++++|||||+|.+.++|.+|+..+++..+.|+.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~---------t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV---------TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 699999999999999999999999999999987764 37889999999999999999999999999999999
Q ss_pred EEccCCCC--CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 006726 203 WARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (633)
Q Consensus 203 ~v~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 280 (633)
+|...... .......+|||+|||.++++++|+++|+.||.|.+|+++.+ .+|+++|||||+|.+.++|.+|++.|||
T Consensus 73 ~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 73 RIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred EeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 98654322 22334568999999999999999999999999999999887 4788999999999999999999999999
Q ss_pred ceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHH
Q 006726 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 360 (633)
Q Consensus 281 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (633)
..+.|+.|.|....++.....
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~----------------------------------------------------------- 172 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREA----------------------------------------------------------- 172 (562)
T ss_pred cEecCceEEEecccccccccc-----------------------------------------------------------
Confidence 999999999976644321100
Q ss_pred hhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHH
Q 006726 361 LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE 440 (633)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~ 440 (633)
......++|||+|||+++|++
T Consensus 173 -----------------------------------------------------------~~~~~~~~l~V~nl~~~~tee 193 (562)
T TIGR01628 173 -----------------------------------------------------------APLKKFTNLYVKNLDPSVNED 193 (562)
T ss_pred -----------------------------------------------------------ccccCCCeEEEeCCCCcCCHH
Confidence 011124689999999999999
Q ss_pred HHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc----CeEEEEEEccChhhhchh
Q 006726 441 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----GRQLTVLKALDKKLAHDK 516 (633)
Q Consensus 441 ~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~----gr~l~V~~a~~k~~~~~~ 516 (633)
+|+++|+.||.|.++.++.+. +|.++|||||.|.+.++|.+|++.|| |..|. |+.|.|.++..+.+....
T Consensus 194 ~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~-----g~~i~~~~~g~~l~v~~a~~k~er~~~ 267 (562)
T TIGR01628 194 KLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMN-----GKKIGLAKEGKKLYVGRAQKRAEREAE 267 (562)
T ss_pred HHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CcEecccccceeeEeecccChhhhHHH
Confidence 999999999999999998885 78899999999999999999999999 99999 999999998876442111
Q ss_pred hhhhccccccccccccccccCcccCCCCcCCCCChhHHHHHHHHHHHHHhhcCCCCCcccCcEEEEeCCCCCCCHHHHHH
Q 006726 517 EIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKK 596 (633)
Q Consensus 517 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~s~~~l~i~NlP~~~te~~l~~ 596 (633)
... ...+....... ....++|||+|||.++|+++|++
T Consensus 268 ~~~---------------------------------------~~~~~~~~~~~----~~~~~~l~V~nl~~~~~~~~L~~ 304 (562)
T TIGR01628 268 LRR---------------------------------------KFEELQQERKM----KAQGVNLYVKNLDDTVTDEKLRE 304 (562)
T ss_pred HHh---------------------------------------hHHhhhhhhhc----ccCCCEEEEeCCCCccCHHHHHH
Confidence 100 00000000001 12356899999999999999999
Q ss_pred HHHHHH-Hh------hhcccCcceeeeeeecccCc
Q 006726 597 LCIDAV-VS------RASKQKPVIKQVCYLFSFSL 624 (633)
Q Consensus 597 ~f~~~~-~~------~~~~~~~~~~~v~~~~~~~~ 624 (633)
+|+.+. |. ..++...|++||+|-..+..
T Consensus 305 ~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A 339 (562)
T TIGR01628 305 LFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEA 339 (562)
T ss_pred HHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHH
Confidence 998642 11 12344557788887665443
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=8.9e-42 Score=367.87 Aligned_cols=326 Identities=15% Similarity=0.170 Sum_probs=216.3
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHh--CCCeec
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQKEIK 198 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l--~~~~~~ 198 (633)
+++|||+|||+++++++|+++|++||.|.++.++. +++||||+|.+.++|..|+..+ ++..+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------------GKRQALVEFEDEESAKACVNFATSVPIYIR 66 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------------CCCEEEEEeCchHHHHHHHHHhhcCCceEc
Confidence 67999999999999999999999999999999762 3579999999999999999874 789999
Q ss_pred CeEEEEccCCCCC------------CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEec
Q 006726 199 GGTVWARQLGGEG------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266 (633)
Q Consensus 199 g~~i~v~~~~~~~------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 266 (633)
|+.|+|..+.... ......+|||+||++.+|+++|+++|+.||.|.+|.++++. .+|+|||+|.
T Consensus 67 g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~ 142 (481)
T TIGR01649 67 GQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFE 142 (481)
T ss_pred CeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEEC
Confidence 9999996543211 11123479999999999999999999999999999998753 3479999999
Q ss_pred CHHHHHHHHHHhCCceeCC--eeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCC
Q 006726 267 CKRDAESAIQKFNGQKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDL 344 (633)
Q Consensus 267 ~~~~A~~A~~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (633)
+.++|.+|++.|||..|.| +.|+|.|+.+............. .... . ...+..+...
T Consensus 143 ~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~--dyt~-~-----------~l~~~~~~~~------- 201 (481)
T TIGR01649 143 SVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSR--DYTN-P-----------DLPGRRDPGL------- 201 (481)
T ss_pred CHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCC--CCcC-C-----------CCCCCCCCCc-------
Confidence 9999999999999999953 68999999887655433221100 0000 0 0000000000
Q ss_pred CCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCC-CCCcchhh-h----ccccccccccc-ccCCCCCCCccc
Q 006726 345 PSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNK-EQDSDKTV-N----ESAKVSDVSKL-NSSKSKPKSLKQ 417 (633)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~----~~~~~~~~~~~-~~~~~~~~~~~~ 417 (633)
...+.. ..... .+..|......+ .+.. +....-.. . .........+. .......+....
T Consensus 202 --~~~~~~----~~~~~------~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
T TIGR01649 202 --DQTHRQ----RQPAL------LGQHPSSYGHDG--YSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSY 267 (481)
T ss_pred --Cccccc----ccccc------ccCCCccCCCcc--cccCCCCCCcccccccCCCcccCCCCCcccccccccCcccccc
Confidence 000000 00000 000000000000 0000 00000000 0 00000000000 000000000000
Q ss_pred CCCCCCCCcEEEecCCCC-CCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE
Q 006726 418 TEGEDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (633)
Q Consensus 418 ~~~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~ 496 (633)
.......+++|||+|||+ .+|+++|+++|+.||.|..|+|+++. +|||||+|.+.++|.+|+..|| |..
T Consensus 268 ~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~ln-----g~~ 337 (481)
T TIGR01649 268 GPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLN-----GVK 337 (481)
T ss_pred CCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCE
Confidence 011234578999999998 69999999999999999999998873 7999999999999999999999 999
Q ss_pred EcCeEEEEEEccCh
Q 006726 497 LKGRQLTVLKALDK 510 (633)
Q Consensus 497 l~gr~l~V~~a~~k 510 (633)
|.|++|+|.++...
T Consensus 338 l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 338 LFGKPLRVCPSKQQ 351 (481)
T ss_pred ECCceEEEEEcccc
Confidence 99999999997654
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=8e-41 Score=360.48 Aligned_cols=337 Identities=19% Similarity=0.217 Sum_probs=243.8
Q ss_pred ccccEEEEEeccHHHHHHHHHH--hCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccccccccc
Q 006726 9 EHRGFGYVQFAVMEDANRAVEM--KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHS 86 (633)
Q Consensus 9 ~srG~afV~F~~~edA~~Al~~--l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (633)
+++|||||+|.+.++|.+|++. +++..|.|++|+|.|+.++... +. .+ .+
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~--~~---~~-------------~~---------- 87 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK--RD---GN-------------SD---------- 87 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc--cC---CC-------------Cc----------
Confidence 3679999999999999999997 4789999999999999543200 00 00 00
Q ss_pred chhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhcccc
Q 006726 87 SKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLA 166 (633)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~ 166 (633)
.+ ...+....+|||+||++.+|+++|+++|+.||.|.+|.++.+.
T Consensus 88 ----------------------~~----~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~--------- 132 (481)
T TIGR01649 88 ----------------------FD----SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN--------- 132 (481)
T ss_pred ----------------------cc----CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---------
Confidence 00 0000123469999999999999999999999999999876321
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe--EEEEccCC----------CC------------------------
Q 006726 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGG--TVWARQLG----------GE------------------------ 210 (633)
Q Consensus 167 ~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~--~i~v~~~~----------~~------------------------ 210 (633)
..++|||+|.+.++|.+|+..|||..|.+. .|.|..+. ..
T Consensus 133 ----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~ 208 (481)
T TIGR01649 133 ----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQR 208 (481)
T ss_pred ----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCcccccc
Confidence 246899999999999999999999999764 33321100 00
Q ss_pred -------------------------------------------------------------CCCCCCCEEEEcCCCC-CC
Q 006726 211 -------------------------------------------------------------GSKTQKWKLIIRNIPF-KA 228 (633)
Q Consensus 211 -------------------------------------------------------------~~~~~~~~l~v~nlp~-~~ 228 (633)
......++|||+|||+ .+
T Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~v 288 (481)
T TIGR01649 209 QPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKV 288 (481)
T ss_pred ccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCC
Confidence 0012457999999998 69
Q ss_pred CHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccc
Q 006726 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGV 308 (633)
Q Consensus 229 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~ 308 (633)
|+++|+++|+.||.|.+|+++++ .+|||||+|.+.++|..|+..|||..|.|++|+|.++........... .
T Consensus 289 t~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~---~ 360 (481)
T TIGR01649 289 NCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG---Q 360 (481)
T ss_pred CHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC---c
Confidence 99999999999999999999885 469999999999999999999999999999999999865432111000 0
Q ss_pred cCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCC
Q 006726 309 QNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQD 388 (633)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (633)
. .+ + .....+|...
T Consensus 361 ~------~~-------------~------------~~~~~d~~~~----------------------------------- 374 (481)
T TIGR01649 361 L------DD-------------G------------LTSYKDYSSS----------------------------------- 374 (481)
T ss_pred C------cC-------------C------------CcccccccCC-----------------------------------
Confidence 0 00 0 0000000000
Q ss_pred cchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc--eEEEEEeecCCCCCC
Q 006726 389 SDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQVTKRP 466 (633)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--V~~v~i~~d~~~~~~ 466 (633)
...+...+..........++.+|||+|||+++|+++|+++|+.||. |..++++... +..
T Consensus 375 -----------------~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~--~~~ 435 (481)
T TIGR01649 375 -----------------RNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD--NER 435 (481)
T ss_pred -----------------ccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC--CCc
Confidence 0000000000000001234679999999999999999999999998 8888776443 235
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE------EEEEEccCh
Q 006726 467 KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ------LTVLKALDK 510 (633)
Q Consensus 467 ~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~------l~V~~a~~k 510 (633)
+|+|||+|.+.++|.+|+..|| |..|.|+. |+|.++.++
T Consensus 436 ~~~gfVeF~~~e~A~~Al~~ln-----~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 436 SKMGLLEWESVEDAVEALIALN-----HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ceeEEEEcCCHHHHHHHHHHhc-----CCccCCCCCCccceEEEEeccCC
Confidence 8999999999999999999999 99999985 999998754
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.8e-40 Score=353.15 Aligned_cols=301 Identities=21% Similarity=0.248 Sum_probs=233.4
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec-
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK- 198 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~- 198 (633)
..++|||+|||.++++++|.++|++||.|.+++|+++. .|+++|||||+|.+.++|..||+.||+..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~----------sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~ 126 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF----------SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP 126 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC----------CCCccceEEEEeCCHHHHHHHHHHcCCCeecC
Confidence 45789999999999999999999999999999998773 4899999999999999999999999999885
Q ss_pred CeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEE-cccCCCCCceeEEEEEecCHHHHHHHHH
Q 006726 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYI-PHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (633)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~ 276 (633)
|+.+.|..+ ...++|||+|||.++++++|.+.|++++. +..+.+ ......++++|||||+|.++++|..|++
T Consensus 127 Gr~l~V~~S------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 127 GRLLGVCIS------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred Ccccccccc------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 677766533 34679999999999999999999999864 444433 3333456789999999999999999999
Q ss_pred HhCC--ceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHH
Q 006726 277 KFNG--QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEV 354 (633)
Q Consensus 277 ~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (633)
.|+. ..+.|+.|.|.|+.+......
T Consensus 201 kL~~gki~l~Gr~I~VdwA~p~~~~d~----------------------------------------------------- 227 (578)
T TIGR01648 201 KLMPGRIQLWGHVIAVDWAEPEEEVDE----------------------------------------------------- 227 (578)
T ss_pred HhhccceEecCceEEEEeecccccccc-----------------------------------------------------
Confidence 8864 357899999999976431000
Q ss_pred HHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCC
Q 006726 355 DIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP 434 (633)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp 434 (633)
......++|||+|||
T Consensus 228 -----------------------------------------------------------------~~~~~~k~LfVgNL~ 242 (578)
T TIGR01648 228 -----------------------------------------------------------------DVMAKVKILYVRNLM 242 (578)
T ss_pred -----------------------------------------------------------------cccccccEEEEeCCC
Confidence 000113689999999
Q ss_pred CCCCHHHHHHHhhhc--CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhh
Q 006726 435 FDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 435 ~~~te~~L~~~F~~~--G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~ 512 (633)
+++|+++|+++|++| |.|..|+++ ++||||+|.+.++|.+|++.|| |..|+|+.|+|.||.++..
T Consensus 243 ~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ln-----G~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 243 TTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELN-----GKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEccCCCc
Confidence 999999999999999 999998765 5699999999999999999999 9999999999999987643
Q ss_pred hchhhhhhccccccccccccccccCcccCCCCcCCCCChhHHHHHHHHHHHHHhhcCCCCCcccCcEEEEeCCCCCCCHH
Q 006726 513 AHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEK 592 (633)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~s~~~l~i~NlP~~~te~ 592 (633)
.......+... + ...+. +...+.+. +.+.....++++.|+|++.+++
T Consensus 310 ~~~~~~~rg~g-------------g--~~~~~-----------------~~~~~~~g-~~~sp~s~~~~~g~~~~~~~~~ 356 (578)
T TIGR01648 310 KSYVRYTRGTG-------------G--RGKER-----------------QAARQSLG-QVYDPASRSLAYEDYYYHPPYA 356 (578)
T ss_pred ccccccccccC-------------C--Ccccc-----------------cccccccC-cccCcccccccccccccccccc
Confidence 21110000000 0 00000 00000111 1112235799999999999999
Q ss_pred HHHHHHHH
Q 006726 593 GLKKLCID 600 (633)
Q Consensus 593 ~l~~~f~~ 600 (633)
-+.++|..
T Consensus 357 ~~~~~f~~ 364 (578)
T TIGR01648 357 PSLHFPRM 364 (578)
T ss_pred chhhcccc
Confidence 99999964
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=302.24 Aligned_cols=314 Identities=23% Similarity=0.279 Sum_probs=239.9
Q ss_pred ceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 006726 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (633)
Q Consensus 122 ~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~ 201 (633)
..|+|--||..+|+++++.+|...|+|++|+++.++- .|.+.||+||.|.+++||++|+..|||-.+..+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi---------tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI---------TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc---------cccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 3588888999999999999999999999999998885 5999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 006726 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (633)
Q Consensus 202 i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 281 (633)
|.|...++.........|||.+||..+|..+|+.+|++||.|..-+|..|..+|.++|.|||.|....+|+.||+.|||.
T Consensus 113 IKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 113 IKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred EEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 99988888878888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCe--eEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHH
Q 006726 282 KFGKR--PIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARK 359 (633)
Q Consensus 282 ~~~g~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (633)
.-.|. +|.|.|+...........- ...-.... ....+.... +..+-
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~l----s~ly~sp~------------------------rr~~Gp~hh----~~~r~ 240 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQALL----SQLYQSPA------------------------RRYGGPMHH----QAQRF 240 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhhh----HHhhcCcc------------------------ccCCCcccc----hhhhh
Confidence 87654 8999998654221100000 00000000 000000000 00000
Q ss_pred HhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCH
Q 006726 360 VLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDN 439 (633)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te 439 (633)
.+.++......++.. .|...........---++....+.+|||.||.++++|
T Consensus 241 r~~~~~~~~~~~~rf----------------------------sP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de 292 (360)
T KOG0145|consen 241 RLDNLLNPHAAQARF----------------------------SPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADE 292 (360)
T ss_pred ccccccchhhhhccC----------------------------CCccccccceeeeeccCCCCCCeeEEEEEecCCCchH
Confidence 011111000000000 0000000000000000123344899999999999999
Q ss_pred HHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccC
Q 006726 440 EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 440 ~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (633)
.-|.++|++||.|..|+|++|..+.+++|||||.+.+.++|..|+..|| |+.+++|.|.|.+...
T Consensus 293 ~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-----Gy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 293 SILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-----GYRLGDRVLQVSFKTN 357 (360)
T ss_pred hHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-----CccccceEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999 9999999999998544
No 9
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-40 Score=339.25 Aligned_cols=312 Identities=24% Similarity=0.367 Sum_probs=263.1
Q ss_pred cccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcccc
Q 006726 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISG 81 (633)
Q Consensus 2 v~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (633)
.+|- | |.|||||.|.+++||.+||+.+|...|.|++|+|.|+...+
T Consensus 31 c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~------------------------------- 76 (369)
T KOG0123|consen 31 CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP------------------------------- 76 (369)
T ss_pred eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-------------------------------
Confidence 4666 5 99999999999999999999999999999999999993211
Q ss_pred cccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhh
Q 006726 82 AEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELE 161 (633)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~ 161 (633)
..|||.||+++++..+|.++|+.||.|++|++..+..
T Consensus 77 ----------------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--- 113 (369)
T KOG0123|consen 77 ----------------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--- 113 (369)
T ss_pred ----------------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC---
Confidence 1289999999999999999999999999999987654
Q ss_pred hccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCC--------CCCCCCCEEEEcCCCCCCCHHHH
Q 006726 162 QHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE--------GSKTQKWKLIIRNIPFKAKVNEI 233 (633)
Q Consensus 162 ~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~--------~~~~~~~~l~v~nlp~~~t~~~l 233 (633)
| ++|| ||+|+++++|.+|+..+||..+.|+.|++-..... .....-+.++|.|++.+.+.+.|
T Consensus 114 -------g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 114 -------G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred -------C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHH
Confidence 5 8999 99999999999999999999999999998432211 13345679999999999999999
Q ss_pred HHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCC
Q 006726 234 KDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGD 313 (633)
Q Consensus 234 ~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 313 (633)
..+|..||.|.++.++.+. .|.++||+||.|.++++|..|+..|++..+.+..+.|..+..+..+......
T Consensus 185 ~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~-------- 255 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKR-------- 255 (369)
T ss_pred HHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhh--------
Confidence 9999999999999999874 6779999999999999999999999999999999999887553221100000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhh
Q 006726 314 GNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTV 393 (633)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (633)
.......
T Consensus 256 ---------------------------------------------~~~~~~~---------------------------- 262 (369)
T KOG0123|consen 256 ---------------------------------------------KFEQEFA---------------------------- 262 (369)
T ss_pred ---------------------------------------------hhHhhhh----------------------------
Confidence 0000000
Q ss_pred hcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEE
Q 006726 394 NESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLK 473 (633)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~ 473 (633)
.........+|||+||+..++.+.|+++|+.||+|.+++|+.+. .|+++|||||+
T Consensus 263 ------------------------~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~ 317 (369)
T KOG0123|consen 263 ------------------------KRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVE 317 (369)
T ss_pred ------------------------hccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEE
Confidence 00012235699999999999999999999999999999999886 68999999999
Q ss_pred ecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 474 FKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 474 f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
|.++++|.+|+..+| +..++|++|.|.++..++
T Consensus 318 fs~~eeA~~A~~~~n-----~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 318 FSSPEEAKKAMTEMN-----GRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred cCCHHHHHHHHHhhC-----hhhhcCCchhhhHHhhhc
Confidence 999999999999999 999999999999987443
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.7e-39 Score=312.33 Aligned_cols=249 Identities=24% Similarity=0.301 Sum_probs=214.6
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCee-
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI- 197 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~- 197 (633)
..++.||||.||.++.|++|..+|.+.|+|-++++|+++. +|.++|||||.|.+.++|+.|++.||+.+|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~---------sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir 151 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF---------SGDNRGYAFVTFCTKEEAQEAIKELNNYEIR 151 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc---------CCCCcceEEEEeecHHHHHHHHHHhhCcccc
Confidence 4567899999999999999999999999999999999975 599999999999999999999999999988
Q ss_pred cCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEcccC-CCCCceeEEEEEecCHHHHHHHH
Q 006726 198 KGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNT-DTGLSKGFAFVKFTCKRDAESAI 275 (633)
Q Consensus 198 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~ 275 (633)
.|+.|.|. -...+++|||+|||.++++++|.+.|++.++ |..|.+...+ +..++||||||+|.++..|..|.
T Consensus 152 ~GK~igvc------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 152 PGKLLGVC------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred CCCEeEEE------EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 46777775 3456789999999999999999999999887 7777665543 34689999999999999999998
Q ss_pred HHhCCc--eeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHH
Q 006726 276 QKFNGQ--KFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEE 353 (633)
Q Consensus 276 ~~l~g~--~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (633)
+.|-.. .++|+.+.|+|+.|...-...
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~ded--------------------------------------------------- 254 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEPDED--------------------------------------------------- 254 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCCChh---------------------------------------------------
Confidence 876443 469999999999875421000
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCC
Q 006726 354 VDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL 433 (633)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL 433 (633)
....-+.|||+||
T Consensus 255 -------------------------------------------------------------------~ms~VKvLYVRNL 267 (506)
T KOG0117|consen 255 -------------------------------------------------------------------TMSKVKVLYVRNL 267 (506)
T ss_pred -------------------------------------------------------------------hhhheeeeeeecc
Confidence 0000258999999
Q ss_pred CCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhh
Q 006726 434 PFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (633)
Q Consensus 434 p~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~ 513 (633)
+.++|++.|+++|++||.|+.|+.++| ||||.|.+.++|.+||+.+| |+.|+|..|.|.+|++-...
T Consensus 268 ~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~n-----gkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 268 MESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETN-----GKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred chhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhc-----CceecCceEEEEecCChhhh
Confidence 999999999999999999999977644 99999999999999999999 99999999999999986543
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.5e-37 Score=320.49 Aligned_cols=222 Identities=21% Similarity=0.318 Sum_probs=191.9
Q ss_pred CcccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccc
Q 006726 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (633)
Q Consensus 1 iv~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (633)
||+|+.+|+++|||||+|.+.++|.+||+.|||..|.|++|+|.++.++...
T Consensus 35 i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~---------------------------- 86 (352)
T TIGR01661 35 LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDS---------------------------- 86 (352)
T ss_pred EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccc----------------------------
Confidence 5788999999999999999999999999999999999999999998543210
Q ss_pred ccccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhh
Q 006726 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (633)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~ 160 (633)
....+|||+|||..+++++|.++|++||.|..+.++.+..
T Consensus 87 --------------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-- 126 (352)
T TIGR01661 87 --------------------------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV-- 126 (352)
T ss_pred --------------------------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC--
Confidence 1234699999999999999999999999999999876543
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe--EEEEccCCCCC---------------------------
Q 006726 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG--TVWARQLGGEG--------------------------- 211 (633)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~--~i~v~~~~~~~--------------------------- 211 (633)
.|.++|||||+|.+.++|..|+..|||..+.|. .|.+.......
T Consensus 127 -------~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T TIGR01661 127 -------TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTI 199 (352)
T ss_pred -------CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccc
Confidence 467899999999999999999999999988774 44443211000
Q ss_pred -----------------------------------------------------------------CCCCCCEEEEcCCCC
Q 006726 212 -----------------------------------------------------------------SKTQKWKLIIRNIPF 226 (633)
Q Consensus 212 -----------------------------------------------------------------~~~~~~~l~v~nlp~ 226 (633)
......+|||+|||+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~ 279 (352)
T TIGR01661 200 LTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSP 279 (352)
T ss_pred ccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCC
Confidence 011123699999999
Q ss_pred CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 227 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
.+++++|+++|++||.|.+++|+++..+|.++|||||+|.+.++|.+||..|||..|+|+.|+|.|...+.
T Consensus 280 ~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 280 DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999999999998899999999999999999999999999999999999999997764
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.2e-35 Score=319.54 Aligned_cols=338 Identities=21% Similarity=0.308 Sum_probs=225.2
Q ss_pred cccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCee
Q 006726 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (633)
Q Consensus 118 ~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (633)
.+..++|||+|||..+++++|.++|++||.|..|.++.++. .|.++|||||+|.+.++|.+||. |+|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~---------~~~skg~afVeF~~~e~A~~Al~-l~g~~~ 155 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN---------SRRSKGVAYVEFYDVESVIKALA-LTGQML 155 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---------CCCcceEEEEEECCHHHHHHHHH-hCCCEE
Confidence 35678999999999999999999999999999999987764 48889999999999999999996 899999
Q ss_pred cCeEEEEccCCCC------------CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEe
Q 006726 198 KGGTVWARQLGGE------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265 (633)
Q Consensus 198 ~g~~i~v~~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f 265 (633)
.|++|.|...... ......++|||+|||..+|+++|+++|+.||.|..|.++.+..+|.++|||||+|
T Consensus 156 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f 235 (457)
T TIGR01622 156 LGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQF 235 (457)
T ss_pred CCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEE
Confidence 9999988643211 1112358999999999999999999999999999999999988889999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCC
Q 006726 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLP 345 (633)
Q Consensus 266 ~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (633)
.+.++|.+|+..|||..|.|+.|.|.|+............ .... .. . ...+.
T Consensus 236 ~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~--~~~~-~~-~-----------~~~~~------------- 287 (457)
T TIGR01622 236 HDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANT--FEDI-DK-Q-----------QQMGK------------- 287 (457)
T ss_pred CCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhh--hccc-cc-c-----------ccCCc-------------
Confidence 9999999999999999999999999998633221111000 0000 00 0 00000
Q ss_pred CCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCC--CCCCcccCCCCCC
Q 006726 346 SNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKS--KPKSLKQTEGEDE 423 (633)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 423 (633)
...-..................+.+|.......... ........ .......+...... ..+..........
T Consensus 288 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (457)
T TIGR01622 288 -NLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQ---KLQRDGII---DPNIPSRYATGALAIMARNSFVPSTNNNL 360 (457)
T ss_pred -CCCccchHHHHHhhccCCCCccccCCCccchhhhhc---cccccccc---cccccccccccccccccCCCCCCcccCCC
Confidence 000000000000000000000000111000000000 00000000 00000000000000 0000000001234
Q ss_pred CCcEEEecCCCCCCC----------HHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCC
Q 006726 424 LQNTIFICNLPFDLD----------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (633)
Q Consensus 424 ~~~~lfV~nLp~~~t----------e~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~ 493 (633)
...+|+|.||....+ .+||++.|++||.|..|.|.. ....|++||.|.+.++|.+|+..||
T Consensus 361 ~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~ln----- 431 (457)
T TIGR01622 361 ATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALN----- 431 (457)
T ss_pred CCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhc-----
Confidence 578999999955443 378999999999999997753 3468999999999999999999999
Q ss_pred CeEEcCeEEEEEEccC
Q 006726 494 GIFLKGRQLTVLKALD 509 (633)
Q Consensus 494 g~~l~gr~l~V~~a~~ 509 (633)
|..|+||.|.|.+...
T Consensus 432 Gr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 432 GRYFGGKMITAAFVVN 447 (457)
T ss_pred CcccCCeEEEEEEEcH
Confidence 9999999999999764
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.8e-34 Score=317.00 Aligned_cols=277 Identities=21% Similarity=0.248 Sum_probs=211.1
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccC------------CeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHH
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIG------------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKS 184 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G------------~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~ 184 (633)
..+..++|||||||+.+|+++|.++|..++ .|..+.+ +..+|||||+|.+.++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------------~~~kg~afVeF~~~e~ 235 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------------NKEKNFAFLEFRTVEE 235 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------------CCCCCEEEEEeCCHHH
Confidence 346678999999999999999999999862 3333332 4568999999999999
Q ss_pred HHHHHHHhCCCeecCeEEEEccCCCCC-----------------------------CCCCCCEEEEcCCCCCCCHHHHHH
Q 006726 185 ACASVALLHQKEIKGGTVWARQLGGEG-----------------------------SKTQKWKLIIRNIPFKAKVNEIKD 235 (633)
Q Consensus 185 A~~A~~~l~~~~~~g~~i~v~~~~~~~-----------------------------~~~~~~~l~v~nlp~~~t~~~l~~ 235 (633)
|..|| .|+|..|.|..|.|....... .....++|||+|||+.+++++|++
T Consensus 236 A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 236 ATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred Hhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 99999 599999999999885321100 112347999999999999999999
Q ss_pred hhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCC
Q 006726 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGN 315 (633)
Q Consensus 236 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (633)
+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.............+
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~-------- 386 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNG-------- 386 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccc--------
Confidence 999999999999999888999999999999999999999999999999999999999854321100000000
Q ss_pred CCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhc
Q 006726 316 SDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNE 395 (633)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (633)
.. .... ++ .+.
T Consensus 387 ----------------------------~~---~~~~------------------~~---------~~~----------- 397 (509)
T TIGR01642 387 ----------------------------MA---PVTL------------------LA---------KAL----------- 397 (509)
T ss_pred ----------------------------cc---cccc------------------cc---------ccc-----------
Confidence 00 0000 00 000
Q ss_pred ccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCC----------CHHHHHHHhhhcCceEEEEEeecC---C
Q 006726 396 SAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL----------DNEEVKQRFSAFGEVVSFVPVLHQ---V 462 (633)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~----------te~~L~~~F~~~G~V~~v~i~~d~---~ 462 (633)
.. ... .....+..+|+|.||...- ..++|+++|++||.|..|.|+.+. .
T Consensus 398 -----------~~-----~~~--~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~ 459 (509)
T TIGR01642 398 -----------SQ-----SIL--QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN 459 (509)
T ss_pred -----------hh-----hhc--cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC
Confidence 00 000 0012235799999996421 236899999999999999998653 3
Q ss_pred CCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccC
Q 006726 463 TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 463 ~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (633)
++...|+|||+|.+.++|.+|+..|| |..|+|+.|.|.|...
T Consensus 460 ~~~~~G~~fV~F~~~e~A~~A~~~ln-----Gr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 460 STPGVGKVFLEYADVRSAEKAMEGMN-----GRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcceEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEeCH
Confidence 45678999999999999999999999 9999999999999653
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=296.23 Aligned_cols=248 Identities=29% Similarity=0.416 Sum_probs=196.8
Q ss_pred CcccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccc
Q 006726 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (633)
Q Consensus 1 iv~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (633)
+|+++.++.+||||||+|+..||+++|+..++++.|.||.|+|.+|.+|...+.-..+...
T Consensus 37 vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~------------------- 97 (678)
T KOG0127|consen 37 VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENK------------------- 97 (678)
T ss_pred EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccch-------------------
Confidence 5789999999999999999999999999999999999999999999888755321110000
Q ss_pred ccccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhh
Q 006726 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (633)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~ 160 (633)
. .++......|--...+.. --.|+|.|||+.+...+|..+|+.||.|..|.||..+
T Consensus 98 ~----------veK~~~q~~~~k~~v~~~-----------k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~--- 153 (678)
T KOG0127|consen 98 A----------VEKPIEQKRPTKAKVDLP-----------KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK--- 153 (678)
T ss_pred h----------hhcccccCCcchhhccCc-----------cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC---
Confidence 0 000000001100011111 1249999999999999999999999999999998543
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCC--------------------------------
Q 006726 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLG-------------------------------- 208 (633)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-------------------------------- 208 (633)
+|+-.|||||.|....+|..|+..+|+..|.|++|-|.+.-
T Consensus 154 -------dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~ 226 (678)
T KOG0127|consen 154 -------DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDD 226 (678)
T ss_pred -------CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhccccccc
Confidence 46667999999999999999999999999999998652100
Q ss_pred ----------------C--C----------------------------------------CCCCCCCEEEEcCCCCCCCH
Q 006726 209 ----------------G--E----------------------------------------GSKTQKWKLIIRNIPFKAKV 230 (633)
Q Consensus 209 ----------------~--~----------------------------------------~~~~~~~~l~v~nlp~~~t~ 230 (633)
. . .......+|||+|||+++|+
T Consensus 227 ~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tE 306 (678)
T KOG0127|consen 227 GKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTE 306 (678)
T ss_pred ccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccH
Confidence 0 0 00112379999999999999
Q ss_pred HHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh-----CC-ceeCCeeEEEEEecCCCc
Q 006726 231 NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF-----NG-QKFGKRPIAVDWAVPKNI 298 (633)
Q Consensus 231 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-----~g-~~~~g~~i~v~~~~~~~~ 298 (633)
++|.++|++||.|..+.|+.++.|+.++|.|||.|.+..+|..||... .| ..|.||.|.|..+.++..
T Consensus 307 Eel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 307 EELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999999999999999999999999999999999999999999875 23 667999999999987654
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-35 Score=297.93 Aligned_cols=315 Identities=20% Similarity=0.269 Sum_probs=254.0
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i 202 (633)
.|||| +++|+..|.++|+.+|++.++++..+ . + +.|||||.|.++++|.+||.++|...+.|++|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d----------~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD----------A-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeec----------C-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 48999 99999999999999999999998765 3 4 79999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 006726 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (633)
Q Consensus 203 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 282 (633)
++.++..... .|||+||+..++...|.++|+.||.|.+|++..+. .| ++|| ||+|.++++|.+|+..|||..
T Consensus 68 rim~s~rd~~-----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 68 RIMWSQRDPS-----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred EeehhccCCc-----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 9987654322 29999999999999999999999999999999874 56 9999 999999999999999999999
Q ss_pred eCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhh
Q 006726 283 FGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLN 362 (633)
Q Consensus 283 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (633)
+.|++|.|....++..+......
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~--------------------------------------------------------- 162 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE--------------------------------------------------------- 162 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc---------------------------------------------------------
Confidence 99999999988765543211100
Q ss_pred hcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHH
Q 006726 363 KLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEV 442 (633)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L 442 (633)
....-++++|.|++.+++++.|
T Consensus 163 ----------------------------------------------------------~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 163 ----------------------------------------------------------YKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred ----------------------------------------------------------hhhhhhhhheeccccccchHHH
Confidence 0011368999999999999999
Q ss_pred HHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhhchhhhhhcc
Q 006726 443 KQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSK 522 (633)
Q Consensus 443 ~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~ 522 (633)
..+|+.||.|.++.++.+. .+.++|||||.|.++++|..|+..|+ +..++|..+.|..+..+.+....-
T Consensus 185 ~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~-----~~~~~~~~~~V~~aqkk~e~~~~l----- 253 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLN-----GKIFGDKELYVGRAQKKSEREAEL----- 253 (369)
T ss_pred HHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhcc-----CCcCCccceeecccccchhhHHHH-----
Confidence 9999999999999998886 56699999999999999999999999 999999999999987632211000
Q ss_pred ccccccccccccccCcccCCCCcCCCCChhHHHHHHHHHHHHHhhcCCCCCcccCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 006726 523 NETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV 602 (633)
Q Consensus 523 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~s~~~l~i~NlP~~~te~~l~~~f~~~~ 602 (633)
|.... .....+........|||+||+..++++.|+++|..+.
T Consensus 254 ----------------------------------~~~~~----~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G 295 (369)
T KOG0123|consen 254 ----------------------------------KRKFE----QEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG 295 (369)
T ss_pred ----------------------------------hhhhH----hhhhhccccccccccccccCccccchhHHHHHHhccc
Confidence 00000 0111122223456899999999999999999997432
Q ss_pred -------HhhhcccCcceeeeeeecccCc
Q 006726 603 -------VSRASKQKPVIKQVCYLFSFSL 624 (633)
Q Consensus 603 -------~~~~~~~~~~~~~v~~~~~~~~ 624 (633)
+.-..+...|++||||-..++.
T Consensus 296 eI~s~kv~~~~~g~skG~gfV~fs~~eeA 324 (369)
T KOG0123|consen 296 EITSAKVMVDENGKSKGFGFVEFSSPEEA 324 (369)
T ss_pred ceeeEEEEeccCCCccceEEEEcCCHHHH
Confidence 1123355567888887765543
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=263.62 Aligned_cols=221 Identities=21% Similarity=0.346 Sum_probs=191.6
Q ss_pred CcccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccc
Q 006726 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (633)
Q Consensus 1 iv~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (633)
+|+|+.||+|.|||||.|..++||++|+..|||..++.+.|+|.+|+|....
T Consensus 73 LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~---------------------------- 124 (360)
T KOG0145|consen 73 LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDS---------------------------- 124 (360)
T ss_pred eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhh----------------------------
Confidence 6899999999999999999999999999999999999999999999653211
Q ss_pred ccccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhh
Q 006726 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (633)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~ 160 (633)
.....|||.+||..+|..||.++|++||.|..-++..+..
T Consensus 125 --------------------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv-- 164 (360)
T KOG0145|consen 125 --------------------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV-- 164 (360)
T ss_pred --------------------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc--
Confidence 1122499999999999999999999999988777766654
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe--EEEEccCCC-----------------------------
Q 006726 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG--TVWARQLGG----------------------------- 209 (633)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~--~i~v~~~~~----------------------------- 209 (633)
.|.++|.|||.|....+|..|+..|||..-.|. +|.|.....
T Consensus 165 -------tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~ 237 (360)
T KOG0145|consen 165 -------TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQA 237 (360)
T ss_pred -------cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchh
Confidence 488999999999999999999999999766554 444321100
Q ss_pred ----------------------------------CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC
Q 006726 210 ----------------------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG 255 (633)
Q Consensus 210 ----------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~ 255 (633)
.+.....++|||-||.++++|.-|.++|++||.|..|+|++|..+.
T Consensus 238 ~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttn 317 (360)
T KOG0145|consen 238 QRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTN 317 (360)
T ss_pred hhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcc
Confidence 0123446899999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 256 LSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 256 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
+++|||||.+.+.++|..||..|||..++++.|.|.|-..+
T Consensus 318 kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 318 KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999997544
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-34 Score=266.08 Aligned_cols=234 Identities=26% Similarity=0.437 Sum_probs=192.3
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecC
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g 199 (633)
..|||||+||.+++||+-|..||+++|.+.+++++.+.-
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------------------------------- 43 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------------------------------- 43 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-----------------------------------------
Confidence 468999999999999999999999999999999774321
Q ss_pred eEEEEccCC--CCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 006726 200 GTVWARQLG--GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 200 ~~i~v~~~~--~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (633)
+.+|...+. ..........|||+.|...++.++|++.|.+||.|.+++|++|..+++++|||||.|-+.++|++||..
T Consensus 44 ~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 44 KVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred ccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 011111111 111223356899999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHH
Q 006726 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIA 357 (633)
Q Consensus 278 l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (633)
|||.-|++|.|+-.|+..|....... ...|.+.
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n~~-------------------------------------------~ltfdeV---- 156 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMNGK-------------------------------------------PLTFDEV---- 156 (321)
T ss_pred hCCeeeccceeeccccccCccccCCC-------------------------------------------CccHHHH----
Confidence 99999999999999998765111000 0111110
Q ss_pred HHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCC
Q 006726 358 RKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL 437 (633)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~ 437 (633)
.+ ...+..|+|||+|++..+
T Consensus 157 ---~N---------------------------------------------------------Qssp~NtsVY~G~I~~~l 176 (321)
T KOG0148|consen 157 ---YN---------------------------------------------------------QSSPDNTSVYVGNIASGL 176 (321)
T ss_pred ---hc---------------------------------------------------------cCCCCCceEEeCCcCccc
Confidence 00 022337999999999999
Q ss_pred CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhh
Q 006726 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 438 te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~ 512 (633)
||++|++.|++||.|.+|+|.++ +|||||.|.+.|+|..||..|| +..|.|+.+++.|.+....
T Consensus 177 te~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mN-----ntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 177 TEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMN-----NTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred cHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhc-----CceeCceEEEEeccccCCC
Confidence 99999999999999999999988 7999999999999999999999 9999999999999876543
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.2e-33 Score=295.18 Aligned_cols=170 Identities=14% Similarity=0.204 Sum_probs=153.9
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
...++|||+|||+.+++++|+++|.+||.|.+|.++.++. .|+++|||||+|.+.++|..|+..|||..+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~---------TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---------TGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC---------CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 3457899999999999999999999999999999988765 4889999999999999999999999999999
Q ss_pred CeEEEEccCCCCC-----------CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecC
Q 006726 199 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (633)
Q Consensus 199 g~~i~v~~~~~~~-----------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (633)
|+.|.|....... .....++|||+|||+.+++++|+++|+.||.|.+++|+++..+|+++|||||+|.+
T Consensus 176 GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 9999997543211 11234799999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 268 ~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
.++|.+|+..|||..++|+.|+|.++.+..
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999999998643
No 19
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=1e-34 Score=300.08 Aligned_cols=366 Identities=20% Similarity=0.295 Sum_probs=274.0
Q ss_pred cEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHH-----------h--hhcccchhhhhhhhcccCCCCc
Q 006726 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQR-----------R--SKVTQEVQAEDIEKTMDNKDGV 78 (633)
Q Consensus 12 G~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r-----------~--~~~~~~~~~~~~~~~~~~~~~~ 78 (633)
=||||.|..++.|.+|...++|..++||.|.|.+..++...... + ..+........|+..+|+.+..
T Consensus 247 lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~av 326 (725)
T KOG0110|consen 247 LFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAV 326 (725)
T ss_pred hhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHH
Confidence 36999999999999999999999999999999998776543310 0 0111234556788888887776
Q ss_pred ccccccccchhhccC-----------------CCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHH
Q 006726 79 ISGAEKHSSKLLESG-----------------KTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRL 141 (633)
Q Consensus 79 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~ 141 (633)
...++..+++....- ....+.+. ......-+-..++...+..+-++|+|||..+..++|..+
T Consensus 327 a~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~-~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~ 405 (725)
T KOG0110|consen 327 AGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRR-FFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEA 405 (725)
T ss_pred HHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhh-hHHhhCcccccchhhhhhcceeeeccCccccccHHHHHH
Confidence 665555544222100 00001000 001111111223336677788999999999999999999
Q ss_pred HhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCC------------
Q 006726 142 AGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGG------------ 209 (633)
Q Consensus 142 f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~------------ 209 (633)
|..||+|..+.+| +.|.. |+|.|..+.+|..|+..|.+..+...++++...+.
T Consensus 406 F~~fG~i~rvllp------------~~G~~---aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~ 470 (725)
T KOG0110|consen 406 FLRFGEIGRVLLP------------PGGTG---AIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDL 470 (725)
T ss_pred hhcccccceeecC------------cccce---eeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCcccccc
Confidence 9999999999654 22332 99999999999999999998887777665421100
Q ss_pred ------C--------------------------------CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEccc
Q 006726 210 ------E--------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN 251 (633)
Q Consensus 210 ------~--------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 251 (633)
. ......++|||+||++.+|.++|..+|..+|.|.++.|...
T Consensus 471 ~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kk 550 (725)
T KOG0110|consen 471 SAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKK 550 (725)
T ss_pred ccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecc
Confidence 0 00112344999999999999999999999999999988765
Q ss_pred CCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCc
Q 006726 252 TDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDD 328 (633)
Q Consensus 252 ~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (633)
+.. -.+.|||||+|.++++|+.|++.|+|+.++|+.|.|.++..+.......
T Consensus 551 kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK------------------------- 605 (725)
T KOG0110|consen 551 KDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGK------------------------- 605 (725)
T ss_pred ccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccc-------------------------
Confidence 421 1356999999999999999999999999999999999986221100000
Q ss_pred cccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccC
Q 006726 329 AETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSS 408 (633)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (633)
T Consensus 606 -------------------------------------------------------------------------------- 605 (725)
T KOG0110|consen 606 -------------------------------------------------------------------------------- 605 (725)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 409 KSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
.......++.|.|+|||+.++..+++.+|+.||.|.+|+|+.....+.++|||||.|-++.+|.+|+.+|.
T Consensus 606 ---------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 606 ---------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred ---------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 00011125799999999999999999999999999999999886677789999999999999999999999
Q ss_pred CCCCCCeEEcCeEEEEEEccChhh
Q 006726 489 TTSGLGIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 489 ~~~~~g~~l~gr~l~V~~a~~k~~ 512 (633)
+.+|.||+|.+.||..-..
T Consensus 677 -----STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 677 -----STHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred -----ccceechhhheehhccchH
Confidence 9999999999999987554
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=274.51 Aligned_cols=371 Identities=22% Similarity=0.313 Sum_probs=239.3
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCC-CeecC
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ-KEIKG 199 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~-~~~~g 199 (633)
...+|||-||..++|.||+++|++||.|.+|.++.|+. .|.++|||||.|.+.++|.+|+.+|++ +.|.|
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~---------t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS---------TGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc---------cCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 45699999999999999999999999999999999986 478899999999999999999999965 56666
Q ss_pred e--EEEEccCCCCCCC-CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHH
Q 006726 200 G--TVWARQLGGEGSK-TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (633)
Q Consensus 200 ~--~i~v~~~~~~~~~-~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 276 (633)
- ++.|+....+... ...+.|||+-|+..+||.+++++|++||.|++|.|.++. .+.+||||||.|.+.+-|..||+
T Consensus 105 ~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred CCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHH
Confidence 4 6777776654433 457899999999999999999999999999999999985 79999999999999999999999
Q ss_pred HhCCce-eCC--eeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCC-------ccccCC--
Q 006726 277 KFNGQK-FGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNS-------SEKEDL-- 344 (633)
Q Consensus 277 ~l~g~~-~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-- 344 (633)
.|||.. +.| .+|.|.|+.++.................. . ..-.......+.+.-+.. ...+..
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qq-l----~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g 258 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQ-L----GNGQNPQNLASLGALSNGYQGPQQQTQQSQNVG 258 (510)
T ss_pred hhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHH-h----cCCCCccchhhhhccCcccCchhhhccccCCCc
Confidence 999975 444 58999999887654322110000000000 0 000000000000110100 000000
Q ss_pred -----CCCcCchHHHHHHHHHhh-------h-cccC-----------CCCCCCCCCccccccCCCCCCc--c--------
Q 006726 345 -----PSNADFDEEVDIARKVLN-------K-LTST-----------TGSLPSLSDDSALVKGNKEQDS--D-------- 390 (633)
Q Consensus 345 -----~~~~~~~~~~~~~~~~~~-------~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--~-------- 390 (633)
+.-............... . .... .+..+++............... .
T Consensus 259 ~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~ 338 (510)
T KOG0144|consen 259 TLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTF 338 (510)
T ss_pred ccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcC
Confidence 000011100000000000 0 0000 0111111000000000000000 0
Q ss_pred -hhhhccccccc---------------------ccccc---------c--CCCCC-----C-------------CcccCC
Q 006726 391 -KTVNESAKVSD---------------------VSKLN---------S--SKSKP-----K-------------SLKQTE 419 (633)
Q Consensus 391 -~~~~~~~~~~~---------------------~~~~~---------~--~~~~~-----~-------------~~~~~~ 419 (633)
-+........+ ..|.. + ..... + ..-...
T Consensus 339 p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q 418 (510)
T KOG0144|consen 339 PGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQ 418 (510)
T ss_pred CCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCcc
Confidence 00000000000 00000 0 00000 0 000012
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 420 GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 420 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
.+.+++.+|||++||.+.-+.+|...|..||.|.+.++..|+.|+.+++|+||.|++..+|..||..|| |..+++
T Consensus 419 ~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amn-----gfQig~ 493 (510)
T KOG0144|consen 419 VEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMN-----GFQIGS 493 (510)
T ss_pred ccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhc-----chhhcc
Confidence 356788999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEEEccChh
Q 006726 500 RQLTVLKALDKK 511 (633)
Q Consensus 500 r~l~V~~a~~k~ 511 (633)
++|+|...+++.
T Consensus 494 KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 494 KRLKVQLKRDRN 505 (510)
T ss_pred ccceEEeeeccC
Confidence 999999877653
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=275.99 Aligned_cols=211 Identities=22% Similarity=0.332 Sum_probs=185.7
Q ss_pred CcccCCCCccccEEEEEeccHHHHHHHHHHhCCceeC-CeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcc
Q 006726 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVG-GRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVI 79 (633)
Q Consensus 1 iv~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~-gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 79 (633)
||+|+.+|.+||||||.|.+.++|++|++.||+..|. |+.|.|..+.
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv-------------------------------- 162 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV-------------------------------- 162 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee--------------------------------
Confidence 6899999999999999999999999999999999997 9999998872
Q ss_pred cccccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCC-eEEEEeeCCch
Q 006726 80 SGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGT-VCSVTYPLPKE 158 (633)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~ 158 (633)
+.+.|||||||..+++++|.+.|++.++ |..|.+..+.+
T Consensus 163 ----------------------------------------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~ 202 (506)
T KOG0117|consen 163 ----------------------------------------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPD 202 (506)
T ss_pred ----------------------------------------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcc
Confidence 2356999999999999999999999995 77888776665
Q ss_pred hhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhC--CCeecCeEEEEccCCCCCCC-----CCCCEEEEcCCCCCCCHH
Q 006726 159 ELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH--QKEIKGGTVWARQLGGEGSK-----TQKWKLIIRNIPFKAKVN 231 (633)
Q Consensus 159 ~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--~~~~~g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~ 231 (633)
...+++|||||+|.++..|..|..+|- ...+.|+.+.|....+.... .....|||+||+.++|++
T Consensus 203 --------dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE 274 (506)
T KOG0117|consen 203 --------DKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEE 274 (506)
T ss_pred --------ccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHH
Confidence 457899999999999999999998873 35678888888765543322 334689999999999999
Q ss_pred HHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcc
Q 006726 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIY 299 (633)
Q Consensus 232 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 299 (633)
.|+++|++||.|+.|+.++| ||||.|.+.++|.+||+.+||..|+|..|.|.+++|....
T Consensus 275 ~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 275 TLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 99999999999999998865 8999999999999999999999999999999999987543
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=7.1e-33 Score=295.18 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=173.8
Q ss_pred CcccCCCCccccEEEEEeccHHHHHHHHHHhCCceeC-CeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcc
Q 006726 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVG-GRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVI 79 (633)
Q Consensus 1 iv~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~-gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 79 (633)
||+| .+|+|||||||+|.+.++|++||+.||+..|. |+.|.|.++.
T Consensus 90 l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-------------------------------- 136 (578)
T TIGR01648 90 LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-------------------------------- 136 (578)
T ss_pred EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc--------------------------------
Confidence 4677 89999999999999999999999999999886 7888876551
Q ss_pred cccccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCC-eEEEEeeCCch
Q 006726 80 SGAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGT-VCSVTYPLPKE 158 (633)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~ 158 (633)
..++|||+|||..+++++|.++|++++. +..+.+.....
T Consensus 137 ----------------------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~ 176 (578)
T TIGR01648 137 ----------------------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAA 176 (578)
T ss_pred ----------------------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccc
Confidence 1357999999999999999999999974 44444332211
Q ss_pred hhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCC--CeecCeEEEEccCCCCC-----CCCCCCEEEEcCCCCCCCHH
Q 006726 159 ELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ--KEIKGGTVWARQLGGEG-----SKTQKWKLIIRNIPFKAKVN 231 (633)
Q Consensus 159 ~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~--~~~~g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~ 231 (633)
..++++|||||+|.++++|..|+..|+. ..+.|+.|.|....... ......+|||+|||.+++++
T Consensus 177 --------~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee 248 (578)
T TIGR01648 177 --------DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEE 248 (578)
T ss_pred --------ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHH
Confidence 2467899999999999999999998864 35789988886543322 12345789999999999999
Q ss_pred HHHHhhccC--CCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 232 EIKDMFSPV--GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 232 ~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
+|+++|+.| |.|.+|.+++ +||||+|.+.++|.+|++.|||..|.|+.|.|.|+.+..
T Consensus 249 ~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 249 IIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 999999999 9999987753 599999999999999999999999999999999998754
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=7.6e-31 Score=266.96 Aligned_cols=172 Identities=26% Similarity=0.468 Sum_probs=157.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+++|+++|+++|+.||.|.+|+|+++..+++++|||||+|.++++|.+||+.|||..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCC
Q 006726 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (633)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (633)
|+.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 9854210
Q ss_pred CCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc
Q 006726 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 451 (633)
....++|||.|||+.+|+++|+++|++||.
T Consensus 190 --------------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 190 --------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred --------------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 001358999999999999999999999999
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC--eEEEEEEccChh
Q 006726 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKK 511 (633)
Q Consensus 452 V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--r~l~V~~a~~k~ 511 (633)
|..|+|+++..++.++|||||+|.+.++|++||+.|| +..+.| ++|.|.+|..+.
T Consensus 220 V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 220 IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-----NVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCccc
Confidence 9999999999999999999999999999999999999 888866 799999988653
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=268.81 Aligned_cols=272 Identities=22% Similarity=0.332 Sum_probs=178.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.+.|+|+|||..+..++|..+|..||.|..+.++. .|. -|+|.|.++.+|.+|+..|....+...++++.|+ |
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a-P 457 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA-P 457 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCccccccC-h
Confidence 47899999999999999999999999999996653 222 3999999999999999999999999999999998 4
Q ss_pred CCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCC
Q 006726 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (633)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (633)
...+............. .+..+........ ..+. .+..+.
T Consensus 458 ~dvf~~~pka~~~~~e~------~~~~ee~~~Er~s---~~d~-------------------------------~v~eD~ 497 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAES------RSKMEENPSERVS---AEDG-------------------------------QVEEDK 497 (725)
T ss_pred hhhccCCcccccccccc------ccccccCcceecc---cccc-------------------------------cccccC
Confidence 44333110000000000 0000000000000 0000 000000
Q ss_pred CccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEE
Q 006726 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (633)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v 455 (633)
+.++. .+..... ......++|||+||++++|.++|..+|.+.|.|.++
T Consensus 498 --------------d~te~-----------------ss~a~~a-~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~ 545 (725)
T KOG0110|consen 498 --------------DPTEE-----------------SSLARVA-EDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSI 545 (725)
T ss_pred --------------Ccccc-----------------ccchhhh-hccccchhhhhhcCCcccchhHHHHHHHhcCeEEEE
Confidence 00000 0000000 011112349999999999999999999999999999
Q ss_pred EEeecCCC---CCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhhchhhhhhcccccccccccc
Q 006726 456 VPVLHQVT---KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLY 532 (633)
Q Consensus 456 ~i~~d~~~---~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~ 532 (633)
.|.+.+.. -.+.|||||+|.++++|++|++.|+ |..|+|+.|.|.++..+.+..-. +
T Consensus 546 ~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-----gtvldGH~l~lk~S~~k~~~~~g---K------------ 605 (725)
T KOG0110|consen 546 EISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-----GTVLDGHKLELKISENKPASTVG---K------------ 605 (725)
T ss_pred EEeccccccccccccceeEEEecCHHHHHHHHHHhc-----CceecCceEEEEeccCccccccc---c------------
Confidence 88766532 1356999999999999999999999 99999999999998733221100 0
Q ss_pred ccccCcccCCCCcCCCCChhHHHHHHHHHHHHHhhcCCCCCcccCcEEEEeCCCCCCCHHHHHHHHHHHH--------Hh
Q 006726 533 LAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV--------VS 604 (633)
Q Consensus 533 l~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~s~~~l~i~NlP~~~te~~l~~~f~~~~--------~~ 604 (633)
+...+ ...|.|+|+|||+..+-.+++.||.... ..
T Consensus 606 ---------------------------------~~~~k----k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 606 ---------------------------------KKSKK----KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred ---------------------------------ccccc----cccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 00001 1257899999999999999999997431 11
Q ss_pred hhcccCcceeeeeeecccC
Q 006726 605 RASKQKPVIKQVCYLFSFS 623 (633)
Q Consensus 605 ~~~~~~~~~~~v~~~~~~~ 623 (633)
+-.....|++||.|+.-..
T Consensus 649 ~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred hcchhhccceeeeccCcHH
Confidence 2334456899999987443
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.3e-29 Score=270.30 Aligned_cols=181 Identities=25% Similarity=0.425 Sum_probs=156.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...++|||+|||+.+++++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred cCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCC
Q 006726 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (633)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (633)
......... .+ ..
T Consensus 185 ~~~p~a~~~-------------~~-------------------------------~~----------------------- 197 (612)
T TIGR01645 185 SNMPQAQPI-------------ID-------------------------------MV----------------------- 197 (612)
T ss_pred ccccccccc-------------cc-------------------------------cc-----------------------
Confidence 221100000 00 00
Q ss_pred CCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceE
Q 006726 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (633)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~ 453 (633)
.......++|||+|||+++++++|+++|+.||.|.
T Consensus 198 ---------------------------------------------~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~ 232 (612)
T TIGR01645 198 ---------------------------------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV 232 (612)
T ss_pred ---------------------------------------------cccccccceEEeecCCCCCCHHHHHHHHhhcCCee
Confidence 00111246999999999999999999999999999
Q ss_pred EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 454 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 454 ~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
+|+|+.+..++.++|||||.|.+.++|.+|+..|| ++.|+|+.|+|.++.+..
T Consensus 233 svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN-----g~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 233 KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC-----CCeeCCeEEEEEecCCCc
Confidence 99999999999999999999999999999999999 999999999999999744
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=8.9e-29 Score=271.87 Aligned_cols=246 Identities=16% Similarity=0.235 Sum_probs=182.1
Q ss_pred ccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccccc
Q 006726 3 TKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGA 82 (633)
Q Consensus 3 ~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (633)
.+...++++|||||+|.+.++|..||. |||..|.|++|+|.......+..... . ...
T Consensus 215 ~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~----~-----~~~------------- 271 (509)
T TIGR01642 215 SSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQIT----P-----EVS------------- 271 (509)
T ss_pred EEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccC----C-----CCC-------------
Confidence 344567889999999999999999995 89999999999997553221100000 0 000
Q ss_pred ccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhh
Q 006726 83 EKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQ 162 (633)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~ 162 (633)
...+..... ....+..........++|||+|||..+++++|.++|+.||.|..+.++.+..
T Consensus 272 ------------~~~~~~~~~---~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---- 332 (509)
T TIGR01642 272 ------------QKNPDDNAK---NVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA---- 332 (509)
T ss_pred ------------CCCCccccc---ccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----
Confidence 000000000 0000000001123457899999999999999999999999999999876653
Q ss_pred ccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCCC----------------------------CCC
Q 006726 163 HGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEG----------------------------SKT 214 (633)
Q Consensus 163 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~----------------------------~~~ 214 (633)
.|.++|||||+|.+.++|..|+..|+|..|.|+.|.|....... ...
T Consensus 333 -----~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 333 -----TGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGK 407 (509)
T ss_pred -----CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCC
Confidence 48899999999999999999999999999999999885432100 012
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHhhccCCCeEEEEEcccC---CCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 006726 215 QKWKLIIRNIPFKA----------KVNEIKDMFSPVGLVWNVYIPHNT---DTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (633)
Q Consensus 215 ~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 281 (633)
+..+|+|.|+.... ..++|+++|++||.|..|.|++.. .++.+.|+|||+|.+.++|.+|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 45688999996421 236899999999999999998752 33556799999999999999999999999
Q ss_pred eeCCeeEEEEEecC
Q 006726 282 KFGKRPIAVDWAVP 295 (633)
Q Consensus 282 ~~~g~~i~v~~~~~ 295 (633)
.|+|+.|.|.|...
T Consensus 488 ~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 488 KFNDRVVVAAFYGE 501 (509)
T ss_pred EECCeEEEEEEeCH
Confidence 99999999999854
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=4.8e-29 Score=253.76 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=155.8
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
...++|||+|||+++|+++|+++|+.||.|.+|+|+.++. .++++|||||+|.++++|..|++.|++..+.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~---------tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK---------TGYSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---------CCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 4568999999999999999999999999999999987764 4889999999999999999999999999999
Q ss_pred CeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 006726 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (633)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (633)
++.|.|............++|||+|||..+|+++|+++|++||.|..+.|+++..+++++|||||+|.+.++|++||+.|
T Consensus 176 gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 176 NKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred CceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 99999987655445556789999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCC--eeEEEEEecCCC
Q 006726 279 NGQKFGK--RPIAVDWAVPKN 297 (633)
Q Consensus 279 ~g~~~~g--~~i~v~~~~~~~ 297 (633)
|+..+.+ ++|.|.++....
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCccCCCceeEEEEECCccc
Confidence 9999865 789999987653
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=1.3e-28 Score=266.72 Aligned_cols=180 Identities=27% Similarity=0.416 Sum_probs=155.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||..+++++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+||. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999998899999999999999999999997 899999999999987
Q ss_pred ecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCC
Q 006726 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (633)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (633)
+........... ..
T Consensus 165 ~~~~~~~~~~~~---------------------------------------------------------~~--------- 178 (457)
T TIGR01622 165 SQAEKNRAAKAA---------------------------------------------------------TH--------- 178 (457)
T ss_pred cchhhhhhhhcc---------------------------------------------------------cc---------
Confidence 643211000000 00
Q ss_pred CCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCce
Q 006726 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (633)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V 452 (633)
.....+..++|||+|||+.+|+++|+++|++||.|
T Consensus 179 ---------------------------------------------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i 213 (457)
T TIGR01622 179 ---------------------------------------------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI 213 (457)
T ss_pred ---------------------------------------------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Confidence 00001115799999999999999999999999999
Q ss_pred EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccC
Q 006726 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 453 ~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (633)
..|.++.+..+|.++|||||+|.+.++|.+|+..|| |..|.|++|.|.||..
T Consensus 214 ~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~-----g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 214 EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN-----GFELAGRPIKVGYAQD 265 (457)
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC-----CcEECCEEEEEEEccC
Confidence 999999999899999999999999999999999999 9999999999999874
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.1e-27 Score=205.31 Aligned_cols=174 Identities=30% Similarity=0.442 Sum_probs=157.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
...+..+|||+||+..++++.|.++|-+.|+|.++++++++.+...+|||||+|.++++|+.|++.||...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCC
Q 006726 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (633)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (633)
.+...+.
T Consensus 85 kas~~~~------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 85 KASAHQK------------------------------------------------------------------------- 91 (203)
T ss_pred ecccccc-------------------------------------------------------------------------
Confidence 8752110
Q ss_pred CCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc
Q 006726 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 451 (633)
....+.+|||+||.+.+++.-|.+.|+.||.
T Consensus 92 -------------------------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 92 -------------------------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred -------------------------------------------------cccccccccccccCcchhHHHHHHHHHhccc
Confidence 1112469999999999999999999999999
Q ss_pred eEEE-EEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhh
Q 006726 452 VVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 452 V~~v-~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~ 512 (633)
+... .|+++..||.++|||||.|.+.+.+.+|+..|| |..+++|++.|.+|..+..
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-----gq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-----GQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-----cchhcCCceEEEEEEecCC
Confidence 8764 789999999999999999999999999999999 9999999999999986543
No 30
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=215.58 Aligned_cols=364 Identities=20% Similarity=0.281 Sum_probs=233.7
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhC--CCe
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH--QKE 196 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--~~~ 196 (633)
..++.|.++|||.+++|++|.+++..||.|..+.+.. |++ .||++|.+.++|...+.... -..
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-------------Gkn--QAflem~d~~sAvtmv~~y~~~~p~ 90 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-------------GKN--QAFLEMADEESAVTMVNYYTSVTPV 90 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeec-------------cch--hhhhhhcchhhhhheeecccccCcc
Confidence 3567899999999999999999999999999988532 333 69999999999988443322 234
Q ss_pred ecCeEEEEccCC----------------------------------------CCCCCCCCCEEEEcCCCCCCCHHHHHHh
Q 006726 197 IKGGTVWARQLG----------------------------------------GEGSKTQKWKLIIRNIPFKAKVNEIKDM 236 (633)
Q Consensus 197 ~~g~~i~v~~~~----------------------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 236 (633)
+.|.+|+++.+. ....+..--+++|.|+-+.++-+-|..+
T Consensus 91 lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqv 170 (492)
T KOG1190|consen 91 LRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQV 170 (492)
T ss_pred ccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHH
Confidence 556666553210 0111223457889999999999999999
Q ss_pred hccCCCeEEEEEcccCCCCCceeE-EEEEecCHHHHHHHHHHhCCcee--CCeeEEEEEecCCCcccCCCccccccCCCC
Q 006726 237 FSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGD 313 (633)
Q Consensus 237 F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 313 (633)
|++||.|..|..... +.|| |+|+|.+.+.|..|...|+|..| +.+.|+++|++-.............
T Consensus 171 FS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSR----- 240 (492)
T KOG1190|consen 171 FSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSR----- 240 (492)
T ss_pred HhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccc-----
Confidence 999999998866653 3344 89999999999999999999988 5678999998765554433211000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCC-ccccccCCCCCCcchh
Q 006726 314 GNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD-DSALVKGNKEQDSDKT 392 (633)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 392 (633)
+ -.......|.+ .+ ..+.. ..+. .+..|.... ....+.+......
T Consensus 241 -----D---yTnp~LP~gd~----------~p---~l~~~---~~aa-------~~~~~~~~g~p~aip~~~~~a~~--- 286 (492)
T KOG1190|consen 241 -----D---YTNPDLPVGDG----------QP---SLDQL---MAAA-------FGSVPAVHGAPLAIPSGAAGANA--- 286 (492)
T ss_pred -----c---ccCCCCCCCcc----------cc---ccchh---hhcc-------ccccccccCCcccCCccchhhcc---
Confidence 0 00000000000 00 00000 0000 000000000 0000000000000
Q ss_pred hhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCC-CCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEE
Q 006726 393 VNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP-FDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGF 471 (633)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp-~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~af 471 (633)
...+.. .....+.|.|.||. +.+|.+-|..+|+.||.|..|+|+.++ +--|.
T Consensus 287 -------------a~~~~~---------~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~AL 339 (492)
T KOG1190|consen 287 -------------ADGKIE---------SPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNAL 339 (492)
T ss_pred -------------cccccc---------cCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----Cccee
Confidence 000000 00025789999995 568999999999999999999999875 35799
Q ss_pred EEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhhchhhhhhccccccccccccccccCcccCCCCcCCCCCh
Q 006726 472 LKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSD 551 (633)
Q Consensus 472 V~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 551 (633)
|.|.+...|+-|+.+|+ |..+.|++|+|.+.+.. ++.+..+|....+-.....-+
T Consensus 340 IQmsd~~qAqLA~~hL~-----g~~l~gk~lrvt~SKH~-------------------~vqlp~egq~d~glT~dy~~s- 394 (492)
T KOG1190|consen 340 IQMSDGQQAQLAMEHLE-----GHKLYGKKLRVTLSKHT-------------------NVQLPREGQEDQGLTKDYGNS- 394 (492)
T ss_pred eeecchhHHHHHHHHhh-----cceecCceEEEeeccCc-------------------cccCCCCCCccccccccCCCC-
Confidence 99999999999999999 99999999999997643 333333333322221111111
Q ss_pred hHHHHHHHHHHHHHhhcCC-CCCcccCcEEEEeCCCCCCCHHHHHHHHHH
Q 006726 552 DDMSKRQMLHEKKMTKLQS-PNFHVSRTRLVIYNLPKSMTEKGLKKLCID 600 (633)
Q Consensus 552 ~~~~~r~~~~~~~~~~~~~-~~~~~s~~~l~i~NlP~~~te~~l~~~f~~ 600 (633)
.+.+.++...+| .+++....+|++.|+|.+++||+|+.+|.+
T Consensus 395 -------pLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~ 437 (492)
T KOG1190|consen 395 -------PLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE 437 (492)
T ss_pred -------chhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhc
Confidence 122233333445 344556679999999999999999999974
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=225.53 Aligned_cols=174 Identities=28% Similarity=0.422 Sum_probs=152.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCeeEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPIA 289 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~ 289 (633)
....-.+||+-+|..|+|.||+.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||+... ...+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 34556899999999999999999999999999999999999999999999999999999999999998765 456888
Q ss_pred EEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCC
Q 006726 290 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 369 (633)
Q Consensus 290 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (633)
|.|+.....
T Consensus 111 vk~Ad~E~e----------------------------------------------------------------------- 119 (510)
T KOG0144|consen 111 VKYADGERE----------------------------------------------------------------------- 119 (510)
T ss_pred ecccchhhh-----------------------------------------------------------------------
Confidence 888743211
Q ss_pred CCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhc
Q 006726 370 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449 (633)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~ 449 (633)
.....+.|||+-|+..+||.+++++|++|
T Consensus 120 ---------------------------------------------------r~~~e~KLFvg~lsK~~te~evr~iFs~f 148 (510)
T KOG0144|consen 120 ---------------------------------------------------RIVEERKLFVGMLSKQCTENEVREIFSRF 148 (510)
T ss_pred ---------------------------------------------------ccccchhhhhhhccccccHHHHHHHHHhh
Confidence 11124689999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCC-eEEcC--eEEEEEEccChhhhc
Q 006726 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG-IFLKG--RQLTVLKALDKKLAH 514 (633)
Q Consensus 450 G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g-~~l~g--r~l~V~~a~~k~~~~ 514 (633)
|.|++|.|++|. .+.+||||||+|.+.+.|..||++|| | ..+.| .+|.|.||.+++...
T Consensus 149 G~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~n-----g~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 149 GHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALN-----GTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred Cccchhhheecc-cccccceeEEEEehHHHHHHHHHhhc-----cceeeccCCCceEEEecccCCCch
Confidence 999999999986 79999999999999999999999999 5 44555 699999999876543
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=2e-25 Score=225.74 Aligned_cols=327 Identities=23% Similarity=0.325 Sum_probs=220.5
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCe
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~ 196 (633)
..++.+|+|+--|+...+..+|.++|+.+|.|..|.++.++. .++++|.|||+|.+.+....|+ .|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~---------s~rskgi~Yvef~D~~sVp~ai-aLsGqr 244 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN---------SRRSKGIAYVEFCDEQSVPLAI-ALSGQR 244 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc---------chhhcceeEEEEecccchhhHh-hhcCCc
Confidence 447889999999999999999999999999999999998875 4778999999999999999999 599999
Q ss_pred ecCeEEEEccCCC--------------CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEE
Q 006726 197 IKGGTVWARQLGG--------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 262 (633)
Q Consensus 197 ~~g~~i~v~~~~~--------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~af 262 (633)
+.|.+|.|..... .....+-..|||+||.+++++++|+.+|++||.|..|.++++..+|+++||||
T Consensus 245 llg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGf 324 (549)
T KOG0147|consen 245 LLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGF 324 (549)
T ss_pred ccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcce
Confidence 9999999864321 11122233499999999999999999999999999999999988999999999
Q ss_pred EEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCcccc
Q 006726 263 VKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKE 342 (633)
Q Consensus 263 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (633)
|+|.+.++|++|+..|||..|.|+.|+|.....+-..... .... .+ .|+. +..|
T Consensus 325 i~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a---~~~~------~d--~D~~----d~~g----------- 378 (549)
T KOG0147|consen 325 ITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEA---AVTQ------FD--FDED----DRQG----------- 378 (549)
T ss_pred EEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccc---cccc------cc--cchh----hccc-----------
Confidence 9999999999999999999999999999877543221100 0000 00 0000 0000
Q ss_pred CCCCCcCchHHHHHHHHHhhhcccCCC-CCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCC
Q 006726 343 DLPSNADFDEEVDIARKVLNKLTSTTG-SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGE 421 (633)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (633)
..+.... ..+.+..+....+ .+++......... .+.+....-+.......+.|+.. .+.-
T Consensus 379 -----l~~~~~g--~~Ql~~kla~~~~~~~~s~~~~~l~~~--~~~~~~~~~~~~~~~~~~~p~~~----------~p~~ 439 (549)
T KOG0147|consen 379 -----LSLGSGG--RNQLMAKLAEGKGRSLPSTAISALLLL--AKLASAAQFNGVVRVRSVDPADA----------SPAF 439 (549)
T ss_pred -----ccccccc--HHHHHHHHhccCCccccchhhhHHHhc--cccchHHhhcCCcCccccCcccc----------cccc
Confidence 0000000 0111111111111 1111111000000 00000000000000000111100 0011
Q ss_pred CCCCcEEEecCC--CCCCC--------HHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCC
Q 006726 422 DELQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTS 491 (633)
Q Consensus 422 ~~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~ 491 (633)
..+..|+.++|+ |...| .+|+.+-+++||.|.+|.| |+ .+-|+.||.|.+.+.|..|+.+||
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~v--d~---ns~g~VYvrc~s~~~A~~a~~alh--- 511 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFV--DK---NSAGCVYVRCPSAEAAGTAVKALH--- 511 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEE--cc---CCCceEEEecCcHHHHHHHHHHHh---
Confidence 244568889998 33333 4788999999999998755 32 235999999999999999999999
Q ss_pred CCCeEEcCeEEEEEEcc
Q 006726 492 GLGIFLKGRQLTVLKAL 508 (633)
Q Consensus 492 ~~g~~l~gr~l~V~~a~ 508 (633)
|.+|.||.|.+.+-.
T Consensus 512 --grWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 512 --GRWFAGRMITAKYLP 526 (549)
T ss_pred --hhhhccceeEEEEee
Confidence 999999999998854
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-25 Score=204.20 Aligned_cols=162 Identities=19% Similarity=0.275 Sum_probs=146.0
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
.-.|||+.|.+.++.++|++.|.+||+|.++++++|.. .++++|||||.|.+.++|++||..|||.-|.++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~---------T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN---------TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeeccc---------CCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 34699999999999999999999999999999998875 489999999999999999999999999999999
Q ss_pred EEEEccCC---C-------------CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEE
Q 006726 201 TVWARQLG---G-------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264 (633)
Q Consensus 201 ~i~v~~~~---~-------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 264 (633)
.|+..... . ......+|+|||+|++..+|+++|++.|++||+|.+|++.++ +|||||.
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVr 206 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVR 206 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEE
Confidence 98753211 1 124567899999999999999999999999999999999985 4999999
Q ss_pred ecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 265 FTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 265 f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
|.+.|+|..||-.+||..|.|+.++|.|.+...
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999999999999986543
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1e-24 Score=208.06 Aligned_cols=166 Identities=14% Similarity=0.207 Sum_probs=150.8
Q ss_pred ceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 006726 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (633)
Q Consensus 122 ~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~ 201 (633)
++||||.|.+...++.|+..|..||+|.++.+.++.. .++++|||||+|+-+|.|+-|++.|||..++|+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~---------T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRN 184 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---------TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 184 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccc---------cccccceEEEEEeCcHHHHHHHHHhccccccCcc
Confidence 5799999999999999999999999999999888875 4889999999999999999999999999999999
Q ss_pred EEEccCCCCCC-----------CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHH
Q 006726 202 VWARQLGGEGS-----------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270 (633)
Q Consensus 202 i~v~~~~~~~~-----------~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 270 (633)
|.|..+...+. ...-.+|||..+.++.+++||+..|+.||+|..|.+-+.+..+.++||||++|.+..+
T Consensus 185 iKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 185 IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred ccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 99965543221 1234799999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 271 AESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 271 A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
...|+..||-..++|..|+|-.+...
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hHHHhhhcchhhcccceEecccccCC
Confidence 99999999999999999999876543
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=8e-25 Score=190.36 Aligned_cols=168 Identities=22% Similarity=0.317 Sum_probs=151.7
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
..|||||||+..++++-|.++|-++|+|.++.+|.++.+ ....||||++|.++|+|.-|++-||...+.|+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~---------~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT---------QKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc---------ccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 458999999999999999999999999999999988863 46789999999999999999999999999999
Q ss_pred EEEEccCCCCC-CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 006726 201 TVWARQLGGEG-SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (633)
Q Consensus 201 ~i~v~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (633)
+|+|....... ....+.+|||+||.+.+++..|.+.|+.||.+.. -.++++..+|.++|||||.|.+.+.+.+|+..|
T Consensus 80 pIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 80 PIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred eeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 99998766322 2344579999999999999999999999999765 378888889999999999999999999999999
Q ss_pred CCceeCCeeEEEEEecCCC
Q 006726 279 NGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 279 ~g~~~~g~~i~v~~~~~~~ 297 (633)
||..+..++|.|.++..+.
T Consensus 160 ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred ccchhcCCceEEEEEEecC
Confidence 9999999999999997654
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=9.7e-24 Score=193.63 Aligned_cols=297 Identities=20% Similarity=0.288 Sum_probs=181.9
Q ss_pred CeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 006726 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (633)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (633)
.++|.|++...+....+.+.|||+-|...-.|+|++.+|..||.|.+|.+.+.. +|.++|||||.|.+.-+|..||..|
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHh
Confidence 356778877777777788999999999999999999999999999999999874 7889999999999999999999999
Q ss_pred CCcee-C--CeeEEEEEecCCCcccCCCccc--cccCCCCCCCCCCCCCCCCCCccccCCCCC-----C-----Ccc-cc
Q 006726 279 NGQKF-G--KRPIAVDWAVPKNIYSSGGAAA--GVQNKGDGNSDSGSDDDLGDDDAETASDDS-----N-----SSE-KE 342 (633)
Q Consensus 279 ~g~~~-~--g~~i~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~-~~ 342 (633)
||... - ...|.|.|+...+++..+.... ++-.......- .+...+.-. . ... ..
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l----------~~g~~~ay~qalmQqQa~~~at~~~~ 150 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLAL----------PFGAYGAYAQALMQQQAALLATVAGP 150 (371)
T ss_pred cccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCcccc----------ccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99764 3 4579999997765443222111 00000000000 000000000 0 000 00
Q ss_pred CCCCCcCchH-HHHHHHHH-hhhcccC-----C----------CCCCCCCCccccccCCCCCC-------cchhhhc---
Q 006726 343 DLPSNADFDE-EVDIARKV-LNKLTST-----T----------GSLPSLSDDSALVKGNKEQD-------SDKTVNE--- 395 (633)
Q Consensus 343 ~~~~~~~~~~-~~~~~~~~-~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--- 395 (633)
-..+..-+.. ..+..... .+.+... . +.+|......+ ..++.... ..++...
T Consensus 151 ~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g-~ng~~~l~~q~~gqpa~~~vy~ng~ 229 (371)
T KOG0146|consen 151 YLSPMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIG-VNGFTGLPPQPNGQPAAEAVYANGL 229 (371)
T ss_pred ccChhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccc-cccccCCCCCCCCCcchhHHhhcCC
Confidence 0000000100 01111111 1111100 0 00000000000 00110000 0000000
Q ss_pred --------------cccccc-----------ccccccCCCCC-CCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhc
Q 006726 396 --------------SAKVSD-----------VSKLNSSKSKP-KSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449 (633)
Q Consensus 396 --------------~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~ 449 (633)
.....+ ..+.......+ +.........+++|+|||++||.+..+.||..+|-+|
T Consensus 230 ~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PF 309 (371)
T KOG0146|consen 230 HPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPF 309 (371)
T ss_pred ccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccc
Confidence 000000 01111111111 1122223467889999999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhh
Q 006726 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 450 G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~ 512 (633)
|.|.+.++.+|+.|+.+++||||.|+++.+|+.||.+|| |+.|+-++|+|...++|+.
T Consensus 310 GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN-----GFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 310 GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN-----GFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred cceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc-----chhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999999999999999999 9999999999999888764
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.91 E-value=4.3e-22 Score=194.61 Aligned_cols=164 Identities=20% Similarity=0.277 Sum_probs=141.1
Q ss_pred ccCceEEEcCCCccccHHHHHHHHh-ccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCee
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAG-SIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (633)
...|.+||+|||+++.+.+|+++|+ +.|+|+.|.+..+. .|+++|+|.|+|.++|.+++|++.||...+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~----------~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE----------SGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc----------CCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 3346699999999999999999998 77899999988765 499999999999999999999999999999
Q ss_pred cCeEEEEccCCCC-------------------------------------------------------------------
Q 006726 198 KGGTVWARQLGGE------------------------------------------------------------------- 210 (633)
Q Consensus 198 ~g~~i~v~~~~~~------------------------------------------------------------------- 210 (633)
.|++|.|......
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccc
Confidence 9999987532110
Q ss_pred ------------------CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHH
Q 006726 211 ------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272 (633)
Q Consensus 211 ------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 272 (633)
-.++....+||.||.+.+....|.+.|.-.|.|..|.+-.++ -|.++|||.++|..+-+|.
T Consensus 192 ~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveav 270 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAV 270 (608)
T ss_pred hhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHH
Confidence 012334689999999999999999999999999999888776 4689999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEe
Q 006726 273 SAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 273 ~A~~~l~g~~~~g~~i~v~~~ 293 (633)
.||..|++.-+..++..+...
T Consensus 271 qaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 271 QAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred HHHHhhccCCCccccceeecc
Confidence 999999987777787777663
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=8.6e-23 Score=195.04 Aligned_cols=179 Identities=26% Similarity=0.493 Sum_probs=154.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
-|+|||+.+.+...|+.|+..|.+||+|.+|.+..|+.+++++|||||+|+-+|.|+.|++.|||..++||.|+|..-.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs- 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS- 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC-
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999997321
Q ss_pred CCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCC
Q 006726 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (633)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (633)
+ ++.. +.++..+-
T Consensus 192 -N----------------------------------------------mpQA----------QpiID~vq---------- 204 (544)
T KOG0124|consen 192 -N----------------------------------------------MPQA----------QPIIDMVQ---------- 204 (544)
T ss_pred -C----------------------------------------------Cccc----------chHHHHHH----------
Confidence 1 0000 00000000
Q ss_pred CccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEE
Q 006726 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (633)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v 455 (633)
.+...-.+|||..+.++.+++||+.+|+.||.|.+|
T Consensus 205 --------------------------------------------eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C 240 (544)
T KOG0124|consen 205 --------------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC 240 (544)
T ss_pred --------------------------------------------HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence 011124699999999999999999999999999999
Q ss_pred EEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 456 ~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
.+-+++..+.++||||++|.+..+-..|+..|| -+.|+|..|+|..+....
T Consensus 241 ~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN-----lFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 241 QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred EeeccCCCCCccceeeEEeccccchHHHhhhcc-----hhhcccceEecccccCCC
Confidence 999999889999999999999999999999999 899999999999988654
No 39
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.88 E-value=6.6e-20 Score=176.16 Aligned_cols=387 Identities=18% Similarity=0.238 Sum_probs=244.8
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHh--CC
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQ 194 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l--~~ 194 (633)
++..+..|.|.+|-..+++.+|.+..+.||+|.-+..+.- +..|.|+|++.+.|..++..- +.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---------------~r~alvefedi~~akn~Vnfaa~n~ 91 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---------------KRQALVEFEDIEGAKNCVNFAADNQ 91 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---------------cceeeeeeccccchhhheehhccCc
Confidence 3355667999999999999999999999999998886522 235999999999999987532 44
Q ss_pred CeecCeEEEE--------ccCCCCCCCCCCCEEE--EcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEE
Q 006726 195 KEIKGGTVWA--------RQLGGEGSKTQKWKLI--IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264 (633)
Q Consensus 195 ~~~~g~~i~v--------~~~~~~~~~~~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 264 (633)
..+.|..-.+ ++.+ ......+..|. |-|--+.+|-+-|..++...|.|.+|.|++. +| --|.|+
T Consensus 92 i~i~gq~Al~NyStsq~i~R~g-~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVE 165 (494)
T KOG1456|consen 92 IYIAGQQALFNYSTSQCIERPG-DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVE 165 (494)
T ss_pred ccccCchhhcccchhhhhccCC-CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEe
Confidence 4455554332 2222 22333344444 4455568899999999999999999999875 33 349999
Q ss_pred ecCHHHHHHHHHHhCCcee--CCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCcccc
Q 006726 265 FTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKE 342 (633)
Q Consensus 265 f~~~~~A~~A~~~l~g~~~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (633)
|.+.+.|++|...|||..| +.+.|+|+|++|.......+......--... ..+..+
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~--------------~~~~~~-------- 223 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPD--------------LRGPYD-------- 223 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCC--------------CCCCCC--------
Confidence 9999999999999999988 6789999999998776544432211000000 000000
Q ss_pred CCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhccccccccccccc-CCCCCCCcccCCCC
Q 006726 343 DLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNS-SKSKPKSLKQTEGE 421 (633)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 421 (633)
++...|....+ ... .+..|+.-. +...+-...+... .....|..- .....+.....+..
T Consensus 224 --~g~~~~~r~~~------p~~---~~~~pss~~--G~h~~y~sg~~~~-------p~~~~P~r~~~~~~~~~g~a~p~g 283 (494)
T KOG1456|consen 224 --PGRNHYDRQRQ------PAP---LGYHPSSRG--GGHSGYYSGDRHG-------PPHPPPSRYRDGYRDGRGYASPGG 283 (494)
T ss_pred --CCCCCCccccC------CCc---cCCChhhcC--CCCCCCcccccCC-------CCCCCCCCCccccccCCCCCCCCC
Confidence 00000000000 000 000000000 0000000000000 000000000 00000000111134
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 422 DELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
...++.+.|.+|... ...+.|.++|..||+|..|+.|+.+ .|.|.|++.+..+.++|+..|| +..+.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLn-----n~~lfG~ 353 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLN-----NIPLFGG 353 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhc-----cCccccc
Confidence 566899999999875 5789999999999999999998765 7899999999999999999999 9999999
Q ss_pred EEEEEEccChhhhchhhhhhccccccccccccccccCcccCCCCcCCCCChhHHHHHHHHHHHHHhhcCCCCCcccCcEE
Q 006726 501 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 580 (633)
Q Consensus 501 ~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~s~~~l 580 (633)
+|.|..++..-. ..-+.|+. .+++++..+.+.+.-.+-....+..++.++-|+ ++|
T Consensus 354 kl~v~~SkQ~~v--------------~~~~pflL-----pDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps-----~vL 409 (494)
T KOG1456|consen 354 KLNVCVSKQNFV--------------SPVQPFLL-----PDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPS-----NVL 409 (494)
T ss_pred eEEEeecccccc--------------ccCCceec-----CCCCcchhhcccccccccCChhHhhcccccCCc-----cee
Confidence 999977542111 01133333 445666555554443333444555566666665 799
Q ss_pred EEeCCCCCCCHHHHHHHHHH
Q 006726 581 VIYNLPKSMTEKGLKKLCID 600 (633)
Q Consensus 581 ~i~NlP~~~te~~l~~~f~~ 600 (633)
+.-|.|..+||+.|.+||..
T Consensus 410 HffNaP~~vtEe~l~~i~ne 429 (494)
T KOG1456|consen 410 HFFNAPLGVTEEQLIGICNE 429 (494)
T ss_pred EEecCCCccCHHHHHHHhhh
Confidence 99999999999999999964
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.88 E-value=2.2e-22 Score=187.37 Aligned_cols=149 Identities=26% Similarity=0.409 Sum_probs=137.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
..|||+|||..+++.+|+.+|++||.|.+|.|+++ ||||..++...|+.||..|||..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999874 7999999999999999999999999999999987654
Q ss_pred CcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCC
Q 006726 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (633)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (633)
..
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred ccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEE
Q 006726 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (633)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~ 456 (633)
..++|+|+||.+.++..+|+..|++||+|.+|.
T Consensus 77 -----------------------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 77 -----------------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECD 109 (346)
T ss_pred -----------------------------------------------CccccccCCCCccccCHHHhhhhcccCCceeee
Confidence 146999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 457 i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
|+ ++|+||.|.-.++|..|++.|+ +..|+|++|+|....++-
T Consensus 110 iv--------kdy~fvh~d~~eda~~air~l~-----~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 110 IV--------KDYAFVHFDRAEDAVEAIRGLD-----NTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ee--------cceeEEEEeeccchHHHHhccc-----ccccccceeeeeeecccc
Confidence 98 5699999999999999999999 999999999999987753
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=182.49 Aligned_cols=147 Identities=21% Similarity=0.280 Sum_probs=137.0
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i 202 (633)
.|||||||..+++.+|+.+|.+||.|.+|.|+ +.||||+.++...|..|+..|++..|.|..|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------------KNYgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-----------------cccceEEeecccccHHHHhhcccceecceEE
Confidence 38999999999999999999999999999987 5699999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 006726 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (633)
Q Consensus 203 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 282 (633)
.|..+... ....++|+|+||.+.++..+|+..|.+||+|.+|.|++ +|+||.|.-.++|..|++.|+|+.
T Consensus 67 nVeaSksK--sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 67 NVEASKSK--SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred EEEecccc--CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 99876543 45678999999999999999999999999999999976 489999999999999999999999
Q ss_pred eCCeeEEEEEecCC
Q 006726 283 FGKRPIAVDWAVPK 296 (633)
Q Consensus 283 ~~g~~i~v~~~~~~ 296 (633)
+.|++++|..+..+
T Consensus 137 ~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSR 150 (346)
T ss_pred cccceeeeeeeccc
Confidence 99999999998654
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=2.7e-19 Score=174.13 Aligned_cols=271 Identities=18% Similarity=0.185 Sum_probs=196.1
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcce-EEEEeCCHHHHHHHHHHhCCCeecCeE
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDA-SAVLYTTVKSACASVALLHQKEIKGGT 201 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~~~~~~g~~ 201 (633)
.++|.|+-+.++-+-|+.+|++||.|..|.-. .++.|| |.|+|.+.+.|..|...|+|..|....
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF--------------~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITF--------------TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC 217 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEE--------------ecccchhhhhhccchhhHHHHHHhccCCcccCce
Confidence 57899999999999999999999999988732 334455 899999999999999999998887765
Q ss_pred EEEccC-------------------------CC-----------------------C---------------CCCC--CC
Q 006726 202 VWARQL-------------------------GG-----------------------E---------------GSKT--QK 216 (633)
Q Consensus 202 i~v~~~-------------------------~~-----------------------~---------------~~~~--~~ 216 (633)
+..+-. .+ + .... ..
T Consensus 218 CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n 297 (492)
T KOG1190|consen 218 CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSAN 297 (492)
T ss_pred eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCc
Confidence 433200 00 0 0001 14
Q ss_pred CEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 217 WKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 217 ~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
+.|.|.||.. .+|.+-|..+|+-||.|.+|+|..++. --|+|+|.+...|+-|++.|+|..+.|++|+|.+++.
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 7888998865 689999999999999999999998743 3499999999999999999999999999999999976
Q ss_pred CCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCC
Q 006726 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (633)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (633)
.......... .+ .|. ......
T Consensus 373 ~~vqlp~egq----------~d------------~gl---------T~dy~~---------------------------- 393 (492)
T KOG1190|consen 373 TNVQLPREGQ----------ED------------QGL---------TKDYGN---------------------------- 393 (492)
T ss_pred ccccCCCCCC----------cc------------ccc---------cccCCC----------------------------
Confidence 5543221100 00 000 000000
Q ss_pred CccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEE
Q 006726 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (633)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v 455 (633)
....+...|..+.....-++..+|++.|+|.++++++|+++|..-|-....
T Consensus 394 -----------------------------spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vka 444 (492)
T KOG1190|consen 394 -----------------------------SPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA 444 (492)
T ss_pred -----------------------------CchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEe
Confidence 000000000011111123446799999999999999999999988766543
Q ss_pred EEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe-EEEEEEccC
Q 006726 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR-QLTVLKALD 509 (633)
Q Consensus 456 ~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr-~l~V~~a~~ 509 (633)
... -++.+.+|++.+.+.|+|..|+-.++ .+.+++. .|+|.+.++
T Consensus 445 fkf----f~kd~kmal~q~~sveeA~~ali~~h-----nh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 445 FKF----FQKDRKMALPQLESVEEAIQALIDLH-----NHYLGENHHLRVSFSKS 490 (492)
T ss_pred eee----cCCCcceeecccCChhHhhhhccccc-----cccCCCCceEEEEeecc
Confidence 222 24457899999999999999999998 8888865 899998754
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.84 E-value=9e-19 Score=175.35 Aligned_cols=332 Identities=17% Similarity=0.243 Sum_probs=196.5
Q ss_pred ceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 006726 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (633)
Q Consensus 122 ~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~ 201 (633)
--|-+.+||+++|++||+++|+.++ |+++.++. .+|+..|-|||+|.+.+|+.+|+++ +-..+..+-
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-----------~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RY 77 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-----------RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRY 77 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-----------cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCce
Confidence 3588999999999999999999997 77776542 3589999999999999999999974 555666666
Q ss_pred EEEccC-----------CCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEcccCCCCCceeEEEEEecCHH
Q 006726 202 VWARQL-----------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTCKR 269 (633)
Q Consensus 202 i~v~~~-----------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~ 269 (633)
|.|-.. .+.........|.+++||+.||++||.++|+..-.|.. |.++.+ ..+++.|-|||+|++.+
T Consensus 78 IEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe 156 (510)
T KOG4211|consen 78 IEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQE 156 (510)
T ss_pred EEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHH
Confidence 665322 12222245679999999999999999999998766555 445554 46789999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcC
Q 006726 270 DAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNAD 349 (633)
Q Consensus 270 ~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (633)
.|++|+.. |...|+.+-|.|..+.................. ....+ -. .... ...+
T Consensus 157 ~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~r-pGpy~--------------------~~-~a~R-g~~d 212 (510)
T KOG4211|consen 157 SAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGR-PGPYD--------------------RP-GAPR-GGYD 212 (510)
T ss_pred HHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCC-CCccc--------------------cc-cCCc-cccc
Confidence 99999996 889999999999877543322211110000000 00000 00 0000 0000
Q ss_pred chHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEE
Q 006726 350 FDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIF 429 (633)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf 429 (633)
+..........+..-....+.+.-.........+..+... ..+... .+...........-....-...+..++
T Consensus 213 ~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~------~~~~~~-~~~~~g~~~~g~~g~~~~~~~~g~fv~ 285 (510)
T KOG4211|consen 213 YGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYG------GGRDPN-YPVSSGPHRQGGAGDYGNGGPGGHFVH 285 (510)
T ss_pred cccccCCCccccccccccCCccccccCccccccccccccc------cccccc-cCCCCCcccCCCcccccCCCCCCceee
Confidence 0000000000000000000000000000000000000000 000000 000000000000000001122237899
Q ss_pred ecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEE
Q 006726 430 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (633)
Q Consensus 430 V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~ 506 (633)
.++||++.++.++.++|+..-.+ .|+|-.. .+|+.+|-|+|+|.|.++|..|+.. + +..++.+.|.+-.
T Consensus 286 MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amsk-d-----~anm~hrYVElFl 354 (510)
T KOG4211|consen 286 MRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGK-D-----GANMGHRYVELFL 354 (510)
T ss_pred ecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhcc-C-----CcccCcceeeecc
Confidence 99999999999999999986555 5666555 4799999999999999999999965 3 5677777766644
No 44
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=3.5e-20 Score=187.90 Aligned_cols=227 Identities=16% Similarity=0.265 Sum_probs=174.6
Q ss_pred CcccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccc
Q 006726 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (633)
Q Consensus 1 iv~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (633)
||.|+.+++++|.|||+|.+.+....||. |.|..+.|.+|.|....- ++. ...+
T Consensus 211 iI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa-----ekn-r~a~------------------- 264 (549)
T KOG0147|consen 211 IIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA-----EKN-RAAN------------------- 264 (549)
T ss_pred eeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH-----HHH-HHHh-------------------
Confidence 68899999999999999999999999995 699999999999977611 110 0000
Q ss_pred ccccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhh
Q 006726 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (633)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~ 160 (633)
...+....... ..-..||||||-..+++++|+..|+.||.|..|.++++.+
T Consensus 265 ------------------------~s~a~~~k~~~---~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~-- 315 (549)
T KOG0147|consen 265 ------------------------ASPALQGKGFT---GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE-- 315 (549)
T ss_pred ------------------------ccccccccccc---cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccc--
Confidence 01111100000 1111289999999999999999999999999999887764
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEcc-------C---------------------CC---
Q 006726 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQ-------L---------------------GG--- 209 (633)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~-------~---------------------~~--- 209 (633)
.|.++|||||+|.+.++|.+|+..|||..|-|+.|.|.- . .+
T Consensus 316 -------tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Q 388 (549)
T KOG0147|consen 316 -------TGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQ 388 (549)
T ss_pred -------cccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHH
Confidence 499999999999999999999999999999999987621 0 00
Q ss_pred -----------------------------------------CCCC-------CCCCEEEEcCCC--CCCC--------HH
Q 006726 210 -----------------------------------------EGSK-------TQKWKLIIRNIP--FKAK--------VN 231 (633)
Q Consensus 210 -----------------------------------------~~~~-------~~~~~l~v~nlp--~~~t--------~~ 231 (633)
.... .+..++.++|+= ...| .+
T Consensus 389 l~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~e 468 (549)
T KOG0147|consen 389 LMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIRE 468 (549)
T ss_pred HHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHH
Confidence 0001 233455666652 1122 47
Q ss_pred HHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 232 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
++.+-+++||.|..|.+..+ +-|+.||.|.+.+.|..|+.+|||..|.|+.|.+.|-.
T Consensus 469 dV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 469 DVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 88888899999999888553 45999999999999999999999999999999999973
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.82 E-value=3.8e-20 Score=182.37 Aligned_cols=176 Identities=25% Similarity=0.457 Sum_probs=155.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..+.|||++|++.++++.|+++|.+||.|..|.+++++.+++++||+||+|.+++...+++.. .-+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999874 6678999999999887
Q ss_pred CCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCC
Q 006726 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (633)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (633)
++.......
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 764321000
Q ss_pred CCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEE
Q 006726 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (633)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~ 454 (633)
.......|||++||.++++++|+++|.+||.|..
T Consensus 93 ----------------------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~ 126 (311)
T KOG4205|consen 93 ----------------------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD 126 (311)
T ss_pred ----------------------------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEe
Confidence 0112469999999999999999999999999999
Q ss_pred EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhhc
Q 006726 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAH 514 (633)
Q Consensus 455 v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~ 514 (633)
+.++.|..+.+++||+||.|.+.+++.+++.. . -+.|+|+.+.|..|.+|+...
T Consensus 127 ~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~-----f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 127 VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-K-----FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eEEeecccccccccceeeEeccccccceeccc-c-----eeeecCceeeEeeccchhhcc
Confidence 99999999999999999999999999998754 3 589999999999999998654
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=8.7e-18 Score=164.70 Aligned_cols=74 Identities=35% Similarity=0.551 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
..|+|||+|||+++|...|++-|..||.|..+.|+. .|+++| .|.|.++++|++|+..|+|..+.|+.|.|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 458999999999999999999999999999988854 467777 89999999999999999999999999999873
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.3e-18 Score=160.14 Aligned_cols=172 Identities=23% Similarity=0.350 Sum_probs=146.0
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCe
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~ 196 (633)
++.+.|.||||=|...-.|+|++.+|..||.|.+|.+..- .+|.++|+|||.|.+.-+|..||..|+|..
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg----------~dg~sKGCAFVKf~s~~eAqaAI~aLHgSq 84 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG----------PDGNSKGCAFVKFSSHAEAQAAINALHGSQ 84 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC----------CCCCCCCceEEEeccchHHHHHHHHhcccc
Confidence 3346678999999999999999999999999999998744 569999999999999999999999998853
Q ss_pred -ecCe--EEEEccC------------------------------------------------------------------
Q 006726 197 -IKGG--TVWARQL------------------------------------------------------------------ 207 (633)
Q Consensus 197 -~~g~--~i~v~~~------------------------------------------------------------------ 207 (633)
+.|- .+.|+..
T Consensus 85 TmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ 164 (371)
T KOG0146|consen 85 TMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQ 164 (371)
T ss_pred cCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHH
Confidence 2222 1111000
Q ss_pred ------------------C-------------------------------------------------------------
Q 006726 208 ------------------G------------------------------------------------------------- 208 (633)
Q Consensus 208 ------------------~------------------------------------------------------------- 208 (633)
.
T Consensus 165 ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq 244 (371)
T KOG0146|consen 165 QMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQ 244 (371)
T ss_pred HHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhh
Confidence 0
Q ss_pred ---------------------------------CCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC
Q 006726 209 ---------------------------------GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG 255 (633)
Q Consensus 209 ---------------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~ 255 (633)
.....+++|+|||-.||....+.+|...|-+||.|.+.++..|+.++
T Consensus 245 ~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATN 324 (371)
T KOG0146|consen 245 QAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATN 324 (371)
T ss_pred hhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccc
Confidence 00113568999999999999999999999999999999999999999
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCc
Q 006726 256 LSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298 (633)
Q Consensus 256 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 298 (633)
.+++||||.|.++.+|+.||..|||..|+-++|+|..-.|++.
T Consensus 325 QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 325 QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred cccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999999999999998877754
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=3.3e-18 Score=168.68 Aligned_cols=171 Identities=20% Similarity=0.308 Sum_probs=149.4
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecC
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g 199 (633)
..+.|||++|+++++++.|++.|.+||.|..+.++.++. .++++||+||.|.+++....++.. ....|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~---------t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS---------TGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC---------CCCcccccceecCCCcchheeecc-cccccCC
Confidence 467899999999999999999999999999999998886 389999999999999999988753 4556888
Q ss_pred eEEEEccCCCCCCC------CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHH
Q 006726 200 GTVWARQLGGEGSK------TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273 (633)
Q Consensus 200 ~~i~v~~~~~~~~~------~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 273 (633)
+.|.+.+.-+.... .....|||++||.++++++|+++|.+||.|..+.++.+..+.+++||+||.|.+++.+.+
T Consensus 75 r~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 75 RSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 88877554333221 234589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEEecCCCcccC
Q 006726 274 AIQKFNGQKFGKRPIAVDWAVPKNIYSS 301 (633)
Q Consensus 274 A~~~l~g~~~~g~~i~v~~~~~~~~~~~ 301 (633)
++. ..-+.|.|+.+.|..|.|+.....
T Consensus 155 v~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 155 VTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ecc-cceeeecCceeeEeeccchhhccc
Confidence 998 488899999999999999876543
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=9.3e-17 Score=146.50 Aligned_cols=209 Identities=21% Similarity=0.286 Sum_probs=147.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHH----hhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKD----MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
.+..+|||.||+..+..++|+. +|++||.|..|...+ +.+.+|-|||.|.+.+.|..|+..|+|..+.|++++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3444999999999999999888 999999999988875 567899999999999999999999999999999999
Q ss_pred EEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCC
Q 006726 290 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 369 (633)
Q Consensus 290 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (633)
|.||..+.....+.......+........ ........+. +..+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~----------~~~~~~~~~~--------ng~~------------------- 126 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEI----------LARIKQPLDT--------NGHF------------------- 126 (221)
T ss_pred eecccCccchhhccCceeccccCcccccc----------ccccCCcccc--------cccc-------------------
Confidence 99998776544332211100000000000 0000000000 0000
Q ss_pred CCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhc
Q 006726 370 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449 (633)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~ 449 (633)
........+.+.. ....++...||+.|||.+++.+.|..+|.+|
T Consensus 127 -----------------------------------~~~~~~~~p~p~~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf 170 (221)
T KOG4206|consen 127 -----------------------------------YNMNRMNLPPPFL-AQMAPPNNILFLTNIPSESESEMLSDLFEQF 170 (221)
T ss_pred -----------------------------------cccccccCCCCcc-ccCCCCceEEEEecCCcchhHHHHHHHHhhC
Confidence 0000000111111 2234557899999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc-CeEEEEEEcc
Q 006726 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKAL 508 (633)
Q Consensus 450 G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~-gr~l~V~~a~ 508 (633)
.....++++... ++.|||+|.+...|..|...+. |..|- ...+.|.+|.
T Consensus 171 ~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq-----~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 171 PGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQ-----GFKITKKNTMQITFAK 220 (221)
T ss_pred cccceeEeccCC-----CceeEEecchhhhhHHHhhhhc-----cceeccCceEEecccC
Confidence 999999877543 7899999999999999999999 87776 8888888764
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.73 E-value=3e-16 Score=157.47 Aligned_cols=221 Identities=22% Similarity=0.265 Sum_probs=160.0
Q ss_pred cccCCCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcccc
Q 006726 2 VTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISG 81 (633)
Q Consensus 2 v~d~~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (633)
+..+.+|+..|-|||+|.+.||+++||+. +...+..|-|.|..+.+.... |. |...+
T Consensus 40 ~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e~d---------------~~---~~~~g---- 96 (510)
T KOG4211|consen 40 EIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAEAD---------------WV---MRPGG---- 96 (510)
T ss_pred EEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCcccc---------------cc---ccCCC----
Confidence 55678899999999999999999999998 889999999999988543210 00 00000
Q ss_pred cccccchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEE-EEeeCCchhh
Q 006726 82 AEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCS-VTYPLPKEEL 160 (633)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~~ 160 (633)
.......-.|-+.+||+.+|++||.++|+..-.+.. +.++++
T Consensus 97 ---------------------------------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d---- 139 (510)
T KOG4211|consen 97 ---------------------------------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD---- 139 (510)
T ss_pred ---------------------------------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc----
Confidence 000012235899999999999999999997654444 444444
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccC----------------------------C----
Q 006726 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQL----------------------------G---- 208 (633)
Q Consensus 161 ~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~----------------------------~---- 208 (633)
+.+++.|-|||+|++.+.|++|+... ...|.-+-|.|-++ +
T Consensus 140 ------~rgR~tGEAfVqF~sqe~ae~Al~rh-re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d 212 (510)
T KOG4211|consen 140 ------QRGRPTGEAFVQFESQESAEIALGRH-RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYD 212 (510)
T ss_pred ------CCCCcccceEEEecCHHHHHHHHHHH-HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccc
Confidence 45888899999999999999999753 22233332221000 0
Q ss_pred -----------------------------------------------CC--------------CCCCCCCEEEEcCCCCC
Q 006726 209 -----------------------------------------------GE--------------GSKTQKWKLIIRNIPFK 227 (633)
Q Consensus 209 -----------------------------------------------~~--------------~~~~~~~~l~v~nlp~~ 227 (633)
.. ........+..++||+.
T Consensus 213 ~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~ 292 (510)
T KOG4211|consen 213 YGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYD 292 (510)
T ss_pred cccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCcc
Confidence 00 00112268999999999
Q ss_pred CCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 228 AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 228 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
.++.++.++|+..-++ .|.|-.. .+|+..|-|+|+|.+.++|..|+.. ++..+..+-|.+..
T Consensus 293 a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 293 ATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFL 354 (510)
T ss_pred CCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhcc-CCcccCcceeeecc
Confidence 9999999999987665 5666554 4799999999999999999999986 88888887776654
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=5e-17 Score=167.86 Aligned_cols=272 Identities=19% Similarity=0.258 Sum_probs=200.8
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhcc-----------C-CeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHH
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSI-----------G-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKS 184 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~-----------G-~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~ 184 (633)
....++.++|+++|+.++++....+|..- | .+..+.+ ...+.+||++|.+.++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------------n~~~nfa~ie~~s~~~ 235 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------------NLEKNFAFIEFRSISE 235 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------------cccccceeEEecCCCc
Confidence 34566789999999999999999988854 3 2334432 3446799999999999
Q ss_pred HHHHHHHhCCCeecCeEEEEccCCC-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCC
Q 006726 185 ACASVALLHQKEIKGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 241 (633)
Q Consensus 185 A~~A~~~l~~~~~~g~~i~v~~~~~-----------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G 241 (633)
|..|+. +++..+.|.++.+..... .........+||++||...++.++.++...||
T Consensus 236 at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg 314 (500)
T KOG0120|consen 236 ATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFG 314 (500)
T ss_pred hhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcc
Confidence 999985 788888888776643211 11123457899999999999999999999999
Q ss_pred CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCC
Q 006726 242 LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSD 321 (633)
Q Consensus 242 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (633)
++....++.+..+|.++||||.+|.++.-...|+..|||..+++..|.|..+............ ++.
T Consensus 315 ~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---------~~~---- 381 (500)
T KOG0120|consen 315 PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN---------ISQ---- 381 (500)
T ss_pred cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC---------ccc----
Confidence 9999999999989999999999999999999999999999999999999998764432111100 000
Q ss_pred CCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhccccccc
Q 006726 322 DDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSD 401 (633)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (633)
. ....+....
T Consensus 382 -------------------------------~---~~~~i~~~~------------------------------------ 391 (500)
T KOG0120|consen 382 -------------------------------S---QVPGIPLLM------------------------------------ 391 (500)
T ss_pred -------------------------------c---ccccchhhh------------------------------------
Confidence 0 000000000
Q ss_pred ccccccCCCCCCCcccCCCCCCCCcEEEecCC--CCCCC--------HHHHHHHhhhcCceEEEEEeec-C--CCCCCce
Q 006726 402 VSKLNSSKSKPKSLKQTEGEDELQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLH-Q--VTKRPKG 468 (633)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~V~~v~i~~d-~--~~~~~~g 468 (633)
......+...|.+.|+ |.+.. -++++.-|++||.|..|.|+++ . ......|
T Consensus 392 ----------------~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~G 455 (500)
T KOG0120|consen 392 ----------------TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTG 455 (500)
T ss_pred ----------------cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcc
Confidence 0002223345666665 22221 2577788889999999999877 2 2334567
Q ss_pred EEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEcc
Q 006726 469 TGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (633)
Q Consensus 469 ~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~ 508 (633)
-.||+|.+.+++++|+.+|+ |..|.||.+...|..
T Consensus 456 kVFVefas~ed~qrA~~~L~-----GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 456 KVFVEFADTEDSQRAMEELT-----GRKFANRTVVASYYD 490 (500)
T ss_pred cEEEEecChHHHHHHHHHcc-----CceeCCcEEEEEecC
Confidence 78999999999999999999 999999999998864
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=7.6e-17 Score=143.72 Aligned_cols=85 Identities=33% Similarity=0.540 Sum_probs=80.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..+++|||+|||+.+|+++|+++|++||.|.+|.|+.|..+++++|||||+|.+.++|++|++.|| +..|+|++|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln-----g~~i~Gr~l 106 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD-----GKELNGRHI 106 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEE
Confidence 346899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
+|.|+.++..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999986543
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.7e-16 Score=138.54 Aligned_cols=146 Identities=18% Similarity=0.263 Sum_probs=126.1
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
+..++|||+|||.++-+.+|.++|.+||.|..|.+... -...+||||+|+++.||..||..-+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r------------~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR------------PGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC------------CCCCCeeEEEecCccchhhhhhcccccccC
Confidence 45688999999999999999999999999999996422 223679999999999999999999999999
Q ss_pred CeEEEEccCCC--------------------------CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccC
Q 006726 199 GGTVWARQLGG--------------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (633)
Q Consensus 199 g~~i~v~~~~~--------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 252 (633)
|..|+|..+.. .........|.|++||.+.+.++|+++....|.|....+.++
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-
Confidence 99999864321 123345679999999999999999999999999988888776
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 006726 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (633)
Q Consensus 253 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 283 (633)
|++.|+|...++.+.|+..|....+
T Consensus 151 ------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 ------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ------cceeeeeeehhhHHHHHHhhccccc
Confidence 5799999999999999999988766
No 54
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.69 E-value=1.1e-14 Score=140.42 Aligned_cols=319 Identities=14% Similarity=0.149 Sum_probs=213.5
Q ss_pred cccEEEEEeccHHHHHHHHHH--hCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcccccccccc
Q 006726 10 HRGFGYVQFAVMEDANRAVEM--KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSS 87 (633)
Q Consensus 10 srG~afV~F~~~edA~~Al~~--l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (633)
.+..|.|+|++.+.|..|+.. -+...+.|+.-.+.+++++.-. | .+.
T Consensus 66 ~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~--R---~g~-------------------------- 114 (494)
T KOG1456|consen 66 HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIE--R---PGD-------------------------- 114 (494)
T ss_pred ccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhc--c---CCC--------------------------
Confidence 345789999999999998765 3445667777777777443211 0 000
Q ss_pred hhhccCCCCCCccccccCccccCCcccchhcccCceEEEc--CCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccc
Q 006726 88 KLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIG--GLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGL 165 (633)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~--nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~ 165 (633)
++. ..+..|.++ |--+.+|.+.|..++...|.|.+|.|+..
T Consensus 115 ----------------------es~------~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--------- 157 (494)
T KOG1456|consen 115 ----------------------ESA------TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--------- 157 (494)
T ss_pred ----------------------CCC------CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec---------
Confidence 000 112234443 44567899999999999999999997632
Q ss_pred cCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEE------------EccCC-------------------------
Q 006726 166 AQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVW------------ARQLG------------------------- 208 (633)
Q Consensus 166 ~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~------------v~~~~------------------------- 208 (633)
+.=.|.|+|++.+.|++|...|||..|...... |.+..
T Consensus 158 -----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~ 232 (494)
T KOG1456|consen 158 -----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQ 232 (494)
T ss_pred -----cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccc
Confidence 122499999999999999999999888765322 10000
Q ss_pred -----------------------------------------------CCCCCCCCCEEEEcCCCC-CCCHHHHHHhhccC
Q 006726 209 -----------------------------------------------GEGSKTQKWKLIIRNIPF-KAKVNEIKDMFSPV 240 (633)
Q Consensus 209 -----------------------------------------------~~~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~ 240 (633)
+.....+++.++|-+|.. .+.-+.|.++|-.|
T Consensus 233 ~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY 312 (494)
T KOG1456|consen 233 RQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY 312 (494)
T ss_pred cCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc
Confidence 000123467899999986 46788999999999
Q ss_pred CCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCC
Q 006726 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGS 320 (633)
Q Consensus 241 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (633)
|.|..|++++. ..|-|.|++.+..+.++|+..||+..+.|.+|.|.+++..-....+.-
T Consensus 313 GNV~rvkFmkT-----k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pf---------------- 371 (494)
T KOG1456|consen 313 GNVERVKFMKT-----KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPF---------------- 371 (494)
T ss_pred CceeeEEEeec-----ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCce----------------
Confidence 99999999986 347899999999999999999999999999999999864432211000
Q ss_pred CCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccc
Q 006726 321 DDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVS 400 (633)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (633)
...+++.| ..+-.+..+.+|....+++.
T Consensus 372 --------lLpDgSpS--fKdys~SkNnRFssp~qAsK------------------------------------------ 399 (494)
T KOG1456|consen 372 --------LLPDGSPS--FKDYSGSKNNRFSSPEQASK------------------------------------------ 399 (494)
T ss_pred --------ecCCCCcc--hhhcccccccccCChhHhhc------------------------------------------
Confidence 00000000 00000011122221111110
Q ss_pred cccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc-eEEEEEeecCCCCCCceEEEEEecCHHH
Q 006726 401 DVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQVTKRPKGTGFLKFKTVEA 479 (633)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~d~~~~~~~g~afV~f~~~e~ 479 (633)
..-..++++|+..|.|..+||+.|..+|...+. -.+++|..-+ ......|.++|++.++
T Consensus 400 ------------------NrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k--serSssGllEfe~~s~ 459 (494)
T KOG1456|consen 400 ------------------NRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK--SERSSSGLLEFENKSD 459 (494)
T ss_pred ------------------ccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc--ccccccceeeeehHHH
Confidence 012234689999999999999999999986553 3445555443 2234568999999999
Q ss_pred HHHHHHhcCCCCCCCeEEcC
Q 006726 480 ATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 480 A~~A~~~ln~~~~~g~~l~g 499 (633)
|..||..+| ...+.+
T Consensus 460 Aveal~~~N-----H~pi~~ 474 (494)
T KOG1456|consen 460 AVEALMKLN-----HYPIEG 474 (494)
T ss_pred HHHHHHHhc-----cccccC
Confidence 999999999 777765
No 55
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.66 E-value=2.6e-15 Score=145.18 Aligned_cols=279 Identities=21% Similarity=0.302 Sum_probs=190.4
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEE-EEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecC
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCS-VTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g 199 (633)
...|...+||+..+..+|..+|...-...- +.+... -.|+..|.|.|.|.+++.-.-|++. +...+.+
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~----------~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ 128 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN----------AQGRRNGEALVRFVDPEGRDLALKR-HKHHMGT 128 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeeh----------hhhccccceEEEecCchhhhhhhHh-hhhhccC
Confidence 345677899999999999999974421110 111111 2367778899999999999989864 6666777
Q ss_pred eEEEEccCCCC----------------CCCCCCCEEEEcCCCCCCCHHHHHHhhccC----CCeEEEEEcccCCCCCcee
Q 006726 200 GTVWARQLGGE----------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDTGLSKG 259 (633)
Q Consensus 200 ~~i~v~~~~~~----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g 259 (633)
+.|.|-...++ .++...-.|.+++||+++++.++.++|.+- |....|-++.. .+|+..|
T Consensus 129 ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTG 207 (508)
T KOG1365|consen 129 RYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTG 207 (508)
T ss_pred CceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCccc
Confidence 77776543221 112234578889999999999999999742 23455655554 4799999
Q ss_pred EEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCc
Q 006726 260 FAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSS 339 (633)
Q Consensus 260 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (633)
-|||.|..+++|+.|+.. |...|+-|.|.+-.+...
T Consensus 208 dAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaa------------------------------------------- 243 (508)
T KOG1365|consen 208 DAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAA------------------------------------------- 243 (508)
T ss_pred ceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHH-------------------------------------------
Confidence 999999999999999996 777777777777554321
Q ss_pred cccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCC
Q 006726 340 EKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTE 419 (633)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (633)
...+.+++.... +-++...+ +. .+.......
T Consensus 244 ----------------Evqqvlnr~~s~-pLi~~~~s----p~--------------------~p~~p~~~~-------- 274 (508)
T KOG1365|consen 244 ----------------EVQQVLNREVSE-PLIPGLTS----PL--------------------LPGGPARLV-------- 274 (508)
T ss_pred ----------------HHHHHHHhhccc-cccCCCCC----CC--------------------CCCCccccC--------
Confidence 122233332210 00000000 00 000000000
Q ss_pred CCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc-eEE--EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE
Q 006726 420 GEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (633)
Q Consensus 420 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~--v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~ 496 (633)
.......+|.+++||++++.+||..+|..|-. |.. |+++.+. .|++.|-|||.|.+.++|..|....+ .+.
T Consensus 275 p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~h-----k~~ 348 (508)
T KOG1365|consen 275 PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCH-----KKL 348 (508)
T ss_pred CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHH-----Hhh
Confidence 01222469999999999999999999999865 444 7777774 69999999999999999999999988 677
Q ss_pred EcCeEEEEEEccCh
Q 006726 497 LKGRQLTVLKALDK 510 (633)
Q Consensus 497 l~gr~l~V~~a~~k 510 (633)
+.+|.|.|-.+...
T Consensus 349 mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 349 MKSRYIEVFPCSVE 362 (508)
T ss_pred cccceEEEeeccHH
Confidence 77999999887643
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=9.1e-16 Score=136.79 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=80.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+++++|+++|++||.|.++.++.+..+++++|||||+|.+.++|+.|++.||+..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006726 293 AVPKN 297 (633)
Q Consensus 293 ~~~~~ 297 (633)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 57
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2e-14 Score=125.61 Aligned_cols=168 Identities=21% Similarity=0.309 Sum_probs=125.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...++|||+|||.++-+.+|+++|-+||.|..|.+...+ ...+||||+|+++.+|+.||..-+|..++|+.|+|+|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 356799999999999999999999999999999875432 25689999999999999999999999999999999997
Q ss_pred cCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCC
Q 006726 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (633)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (633)
..-.... +. .| .+.
T Consensus 81 rggr~s~----------------~~-----------~G-----------------~y~---------------------- 94 (241)
T KOG0105|consen 81 RGGRSSS----------------DR-----------RG-----------------SYS---------------------- 94 (241)
T ss_pred cCCCccc----------------cc-----------cc-----------------ccC----------------------
Confidence 4321000 00 00 000
Q ss_pred CCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceE
Q 006726 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (633)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~ 453 (633)
....+..+ ......+|. .....+|.|.+||.+.+.+||+++..+-|.|-
T Consensus 95 -----gggrgGgg-------------------~gg~rgpps-------rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvC 143 (241)
T KOG0105|consen 95 -----GGGRGGGG-------------------GGGRRGPPS-------RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVC 143 (241)
T ss_pred -----CCCCCCCC-------------------CCcccCCcc-------cccceeEEEecCCCCCchHHHHHHHHhhCCee
Confidence 00000000 000011111 11246999999999999999999999999999
Q ss_pred EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 454 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 454 ~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
+..+.+| |++.|.|...|+-..|+..|.
T Consensus 144 fadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 144 FADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 8877655 488999999999999999998
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.60 E-value=5.4e-14 Score=126.74 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEccc-CCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---CeeE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG---KRPI 288 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i 288 (633)
....+||||.+||.++...+|+.+|..|-..+.+.+... +.....+-+|||.|.+..+|..|++.|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 344689999999999999999999999877666665332 222234579999999999999999999999994 7899
Q ss_pred EEEEecCCCc
Q 006726 289 AVDWAVPKNI 298 (633)
Q Consensus 289 ~v~~~~~~~~ 298 (633)
++++++....
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9999876543
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.59 E-value=3.1e-14 Score=130.10 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=134.4
Q ss_pred CceEEEcCCCccccHHHHHH----HHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCe
Q 006726 121 ARTVIIGGLLNADMAEEVHR----LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~ 196 (633)
+.||||.||+..+..++|+. +|++||.|..|... ...+.+|.|||.|.+.+.|..|+..|+|..
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~------------kt~KmRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF------------KTPKMRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec------------CCCCccCceEEEecChhHHHHHHHHhcCCc
Confidence 34999999999999988877 99999999999854 446779999999999999999999999999
Q ss_pred ecCeEEEEccCCC--------------------------------------------------CCCCCCCCEEEEcCCCC
Q 006726 197 IKGGTVWARQLGG--------------------------------------------------EGSKTQKWKLIIRNIPF 226 (633)
Q Consensus 197 ~~g~~i~v~~~~~--------------------------------------------------~~~~~~~~~l~v~nlp~ 226 (633)
+.|+++++..+.. .....+...+|+.|||.
T Consensus 77 FygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~ 156 (221)
T KOG4206|consen 77 FYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPS 156 (221)
T ss_pred ccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCc
Confidence 9999887643210 01134567899999999
Q ss_pred CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEec
Q 006726 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAV 294 (633)
Q Consensus 227 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~ 294 (633)
.++.+.|..+|.+|.....++++.. ..+.|||+|.+...|..|...++|..+. .+.+.|.++.
T Consensus 157 es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 157 ESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred chhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999999999988764 4578999999999999999999999986 8888888763
No 60
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.58 E-value=1e-13 Score=133.12 Aligned_cols=201 Identities=20% Similarity=0.349 Sum_probs=141.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--------VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
...++.|||.|||.++|.+++.++|++||.|.. |++.++. .|..+|-|+|.|--.++...|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345678999999999999999999999998753 6777764 5999999999999999999999999999999
Q ss_pred CeeEEEEEecCCC--cccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhh
Q 006726 285 KRPIAVDWAVPKN--IYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLN 362 (633)
Q Consensus 285 g~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (633)
|+.|+|+.|.-.. .+....... ....+......+....+.
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k--------------------------------------~k~~~~kk~~k~q~k~~d 251 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEK--------------------------------------GKCKDKKKLKKQQQKLLD 251 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccc--------------------------------------cccccHHHHHHHHHhhcc
Confidence 9999999874321 111000000 000011110000000000
Q ss_pred hcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCC--C--CCCC
Q 006726 363 KLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL--P--FDLD 438 (633)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nL--p--~~~t 438 (633)
- .|. + ...+.....++|.|+|| | +..+
T Consensus 252 w-------~pd-----------------------------------~-------~~~sk~r~~~tVi~kn~Ftp~~~~~~ 282 (382)
T KOG1548|consen 252 W-------RPD-----------------------------------R-------DDPSKARADRTVILKNMFTPEDFEKN 282 (382)
T ss_pred c-------CCC-----------------------------------c-------cccccccCCcEEEeeecCCHHHhccC
Confidence 0 000 0 00012233589999999 2 2233
Q ss_pred -------HHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccCh
Q 006726 439 -------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (633)
Q Consensus 439 -------e~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (633)
.++|++-+++||.|..|.| .+ ..+.|.+-|.|.+.++|..|++.|+ |.+|+||.|.......+
T Consensus 283 ~~l~~dlkedl~eec~K~G~v~~vvv-~d---~hPdGvvtV~f~n~eeA~~ciq~m~-----GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 283 PDLLNDLKEDLTEECEKFGQVRKVVV-YD---RHPDGVVTVSFRNNEEADQCIQTMD-----GRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEE-ec---cCCCceeEEEeCChHHHHHHHHHhc-----CeeecceEEEEEEeCCc
Confidence 5677888999999999854 43 3578999999999999999999999 99999999998876543
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.56 E-value=1.9e-14 Score=112.43 Aligned_cols=70 Identities=30% Similarity=0.572 Sum_probs=67.2
Q ss_pred EEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 428 lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
|||+|||.++|+++|+++|++||.|..+.++.+ .++..+|+|||.|.+.++|.+|++.++ |..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~-----g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELN-----GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcC-----CCEECccCcC
Confidence 799999999999999999999999999999988 678999999999999999999999999 9999999985
No 62
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-14 Score=132.86 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=79.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|.|.|||.++++++|+++|.+||.|..|.|.+|++||.++|||||.|.+.++|.+||+.|| |+-++.-.|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-----G~gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-----GYGYDNLILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-----CcccceEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 006726 504 VLKALDK 510 (633)
Q Consensus 504 V~~a~~k 510 (633)
|.|+.|+
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999875
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.6e-14 Score=132.37 Aligned_cols=84 Identities=31% Similarity=0.670 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|.|.||+.++++.+|+++|.+||.|..|.|.+++.+|.++|||||.|.+.++|.+||..|||.-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 006726 293 AVPK 296 (633)
Q Consensus 293 ~~~~ 296 (633)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9885
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2e-14 Score=133.02 Aligned_cols=167 Identities=22% Similarity=0.368 Sum_probs=131.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
..+||++||+.+.+.+|..+|..||.|..+.+. .||+||.|.+..+|..|+..|||..|.|-.+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999988763 378999999999999999999999999988999988654
Q ss_pred CcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCC
Q 006726 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (633)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (633)
....... ..+ ...
T Consensus 74 ~~~~g~~----------------------------------------~~g-~r~-------------------------- 86 (216)
T KOG0106|consen 74 RRGRGRP----------------------------------------RGG-DRR-------------------------- 86 (216)
T ss_pred ccccCCC----------------------------------------CCC-Ccc--------------------------
Confidence 3211000 000 000
Q ss_pred ccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEE
Q 006726 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (633)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~ 456 (633)
. ............+.|+|.|++..+...+|.++|+++|.+.+..
T Consensus 87 ----------~--------------------------~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 87 ----------S--------------------------DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred ----------c--------------------------hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhh
Confidence 0 0000000122368999999999999999999999999996543
Q ss_pred EeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEc
Q 006726 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (633)
Q Consensus 457 i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a 507 (633)
+ .++++||+|.+.++|.+|+..++ |..+.|++|.+..+
T Consensus 131 ~--------~~~~~~v~Fs~~~da~ra~~~l~-----~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 131 A--------RRNFAFVEFSEQEDAKRALEKLD-----GKKLNGRRISVEKN 168 (216)
T ss_pred h--------hccccceeehhhhhhhhcchhcc-----chhhcCceeeeccc
Confidence 3 47899999999999999999999 99999999999443
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.8e-14 Score=131.70 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=75.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
-+.|||+||+|+++.++|+++|++||.|.++.|+.|+.+|+++|||||+|.+.++|.+|++..| -.|+||+..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~------piIdGR~aNc 85 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN------PIIDGRKANC 85 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC------Cccccccccc
Confidence 5799999999999999999999999999999999999999999999999999999999998887 8999999999
Q ss_pred EEccC
Q 006726 505 LKALD 509 (633)
Q Consensus 505 ~~a~~ 509 (633)
.+|--
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 88754
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=6.2e-14 Score=109.52 Aligned_cols=70 Identities=37% Similarity=0.668 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 219 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
|||+|||..+|+++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 6788999999999999999999999999999999985
No 67
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=7.7e-14 Score=144.46 Aligned_cols=236 Identities=15% Similarity=0.238 Sum_probs=167.6
Q ss_pred CCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCccccccccc
Q 006726 7 SNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHS 86 (633)
Q Consensus 7 tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (633)
....++|||+.|.+.++|..|+.. ++..+.|+++.+.......+.. + + .-.+
T Consensus 219 ~n~~~nfa~ie~~s~~~at~~~~~-~~~~f~g~~~~~~r~~d~~~~p------~----~-----------------~~~~ 270 (500)
T KOG0120|consen 219 LNLEKNFAFIEFRSISEATEAMAL-DGIIFEGRPLKIRRPHDYQPVP------G----I-----------------TLSP 270 (500)
T ss_pred ecccccceeEEecCCCchhhhhcc-cchhhCCCCceecccccccCCc------c----c-----------------hhhh
Confidence 346788999999999999999875 9999999999985442211100 0 0 0000
Q ss_pred chhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhcccc
Q 006726 87 SKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLA 166 (633)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~ 166 (633)
..+....... ......-....+||++||...++.++.++...||++....+..+..
T Consensus 271 -------~~~~~~~~~~---------~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~-------- 326 (500)
T KOG0120|consen 271 -------SQLGKVGLLP---------ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA-------- 326 (500)
T ss_pred -------ccccccCCcc---------cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc--------
Confidence 0000000000 0011112334589999999999999999999999999998887764
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCC------------------------CCCCCCCEEEEc
Q 006726 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE------------------------GSKTQKWKLIIR 222 (633)
Q Consensus 167 ~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~------------------------~~~~~~~~l~v~ 222 (633)
.|.++||||.+|.++.....|++.|||..+.++.+.|+..-.. ....+...|.+.
T Consensus 327 -~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~ 405 (500)
T KOG0120|consen 327 -TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLT 405 (500)
T ss_pred -cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhh
Confidence 4889999999999999999999999999999999987643211 011222333344
Q ss_pred CCCC--CC-C-------HHHHHHhhccCCCeEEEEEcccCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 223 NIPF--KA-K-------VNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 223 nlp~--~~-t-------~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
|+-. .. . .++++.-+++||.|.+|.+++.... ....|--||+|.+.+++++|++.|+|..+.|+.+.
T Consensus 406 n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVv 485 (500)
T KOG0120|consen 406 NVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVV 485 (500)
T ss_pred hcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEE
Confidence 3311 00 1 2566777889999999999887222 23457789999999999999999999999999999
Q ss_pred EEEecC
Q 006726 290 VDWAVP 295 (633)
Q Consensus 290 v~~~~~ 295 (633)
..|...
T Consensus 486 tsYyde 491 (500)
T KOG0120|consen 486 ASYYDE 491 (500)
T ss_pred EEecCH
Confidence 999754
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=7.1e-14 Score=110.41 Aligned_cols=87 Identities=24% Similarity=0.373 Sum_probs=77.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...+-|||+|||+++|.++..++|.+||.|..|+|=.. ...+|.|||.|.+..+|.+|+..|+ |..+.++.|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhls-----g~n~~~ryl 87 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLS-----GYNVDNRYL 87 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhc-----ccccCCceE
Confidence 34679999999999999999999999999999988544 4569999999999999999999999 999999999
Q ss_pred EEEEccChhhhchhh
Q 006726 503 TVLKALDKKLAHDKE 517 (633)
Q Consensus 503 ~V~~a~~k~~~~~~~ 517 (633)
.|-+..+.+......
T Consensus 88 ~vlyyq~~~~~~~~~ 102 (124)
T KOG0114|consen 88 VVLYYQPEDAFKLMD 102 (124)
T ss_pred EEEecCHHHHHHHHH
Confidence 999998866554433
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.51 E-value=6.6e-13 Score=127.68 Aligned_cols=168 Identities=17% Similarity=0.263 Sum_probs=134.9
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccCCeEE--------EEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHH
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCS--------VTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACAS 188 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A 188 (633)
.+..+..|||.|||.++|-+++.++|++||.|.. |++-.+ ..|.-+|-|.+.|...+++.-|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd----------~~G~lKGDaLc~y~K~ESVeLA 199 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD----------NQGKLKGDALCCYIKRESVELA 199 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec----------CCCCccCceEEEeecccHHHHH
Confidence 3556778999999999999999999999997643 222222 3488899999999999999999
Q ss_pred HHHhCCCeecCeEEEEccCC--------------------------------------CCCCCCCCCEEEEcCCCC----
Q 006726 189 VALLHQKEIKGGTVWARQLG--------------------------------------GEGSKTQKWKLIIRNIPF---- 226 (633)
Q Consensus 189 ~~~l~~~~~~g~~i~v~~~~--------------------------------------~~~~~~~~~~l~v~nlp~---- 226 (633)
+..|++..+.|..|+|.... ........++|.++|+=.
T Consensus 200 ~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~ 279 (382)
T KOG1548|consen 200 IKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDF 279 (382)
T ss_pred HHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHh
Confidence 99999999999999985321 011123457999999832
Q ss_pred CCC-------HHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCc
Q 006726 227 KAK-------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298 (633)
Q Consensus 227 ~~t-------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 298 (633)
..+ .++|.+-+.+||.|.+|.|.-.. +.|.+-|.|.+.++|..||+.|+|+.++||.|......-+..
T Consensus 280 ~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 280 EKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 222 46777789999999999886432 678999999999999999999999999999999998765543
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.2e-13 Score=107.91 Aligned_cols=70 Identities=29% Similarity=0.500 Sum_probs=65.2
Q ss_pred EEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 428 lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
|||+|||+.+++++|+++|+.||.|..+++..++. +.++|+|||+|.++++|.+|+..++ |..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~-----~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLN-----GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCC-----CcEECCEEcC
Confidence 79999999999999999999999999999999876 8999999999999999999999999 9999999985
No 71
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=9.3e-14 Score=132.44 Aligned_cols=103 Identities=29% Similarity=0.437 Sum_probs=90.2
Q ss_pred hCCCeecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHH
Q 006726 192 LHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271 (633)
Q Consensus 192 l~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 271 (633)
-++....|..+.+.++..........+|+|.|||+..-+-||+.+|.+||.|.+|.|+.+. -| ++|||||+|++.+||
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RG-SKGFGFVTmen~~da 149 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RG-SKGFGFVTMENPADA 149 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CC-CCccceEEecChhhH
Confidence 3555666677777766666666777899999999999999999999999999999998863 34 899999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEEecCC
Q 006726 272 ESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 272 ~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
++|.++|||..+.||+|.|..+..+
T Consensus 150 dRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 150 DRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHhhcceeeceEEEEeccchh
Confidence 9999999999999999999999776
No 72
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=2.7e-13 Score=129.27 Aligned_cols=81 Identities=22% Similarity=0.518 Sum_probs=75.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|+|.||||..-+-||+.+|.+||.|.+|.|+.+. ..+||||||+|++++||++|-++|| |.++.||+|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LH-----gt~VEGRkI 166 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELH-----GTVVEGRKI 166 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhh-----cceeeceEE
Confidence 345799999999999999999999999999999999874 5689999999999999999999999 999999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
.|..|..+
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99999876
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=3.7e-13 Score=128.03 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..|| .|| |..|.|++|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLn-----G~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLS-----GATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-Hhc-----CCeeCCceEEE
Confidence 47999999999999999999999999999999998853 5799999999999999999 599 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
.++..-
T Consensus 75 t~a~~~ 80 (260)
T PLN03120 75 TPAEDY 80 (260)
T ss_pred EeccCC
Confidence 998753
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.6e-13 Score=112.87 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=75.8
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
.++||||+||++.++|++|.++|+++|.|..|.+=.|+.+..+-|||||+|.+.++|..|++.++ |..|+.++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-----gtrLddr~ir 109 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-----GTRLDDRPIR 109 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-----cCccccccee
Confidence 37899999999999999999999999999998777788888999999999999999999999999 9999999999
Q ss_pred EEEccC
Q 006726 504 VLKALD 509 (633)
Q Consensus 504 V~~a~~ 509 (633)
|+|---
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 999543
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.6e-13 Score=112.91 Aligned_cols=80 Identities=25% Similarity=0.544 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
.+++|||+||++.++|++|.++|+.+|+|..|.+-.++.+..+-|||||+|-+.++|..|++.++|+.++.++|++.|--
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46799999999999999999999999999999888888888899999999999999999999999999999999999863
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=6.2e-13 Score=103.84 Aligned_cols=70 Identities=34% Similarity=0.632 Sum_probs=64.8
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 219 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.++++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999866 89999999999999999999999999999999885
No 77
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.5e-13 Score=127.27 Aligned_cols=145 Identities=28% Similarity=0.445 Sum_probs=123.7
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i 202 (633)
.+|||+||+.+.+.+|..+|..||.+..+.+. .||+||+|.+..+|..|+-.++++.|.|..+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----------------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-----------------NGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-----------------cccceeccCchhhhhcccchhcCceecceee
Confidence 48999999999999999999999999888853 5789999999999999999999999999886
Q ss_pred EEccCCC------C---C-----------CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEE
Q 006726 203 WARQLGG------E---G-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAF 262 (633)
Q Consensus 203 ~v~~~~~------~---~-----------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~af 262 (633)
.+..... . + .....+.++|.+++..+...+|.++|.++|.+....+ ..+++|
T Consensus 66 vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~ 137 (216)
T KOG0106|consen 66 VVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAF 137 (216)
T ss_pred eeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccc
Confidence 5543221 0 0 1234578999999999999999999999999854433 446899
Q ss_pred EEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 263 VKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 263 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
|+|.+.++|.+|+..|+|..+.|+.|.+..
T Consensus 138 v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 138 VEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred eeehhhhhhhhcchhccchhhcCceeeecc
Confidence 999999999999999999999999999943
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=118.31 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=115.3
Q ss_pred cccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCee
Q 006726 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (633)
Q Consensus 118 ~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (633)
+...|||||.+||.++...+|+.+|+.|-.-+...+.+... .+...+.+|||.|.+..+|..|+..|||..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk--------~~~~~~pvaFatF~s~q~A~aamnaLNGvrF 102 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSK--------GDQVCKPVAFATFTSHQFALAAMNALNGVRF 102 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccC--------CCccccceEEEEecchHHHHHHHHHhcCeee
Confidence 45679999999999999999999999986655555432211 1123458999999999999999999999877
Q ss_pred cC---eEEEEccCC-----------C---------------------------------------------C--------
Q 006726 198 KG---GTVWARQLG-----------G---------------------------------------------E-------- 210 (633)
Q Consensus 198 ~g---~~i~v~~~~-----------~---------------------------------------------~-------- 210 (633)
.- ..+.+.-.. + .
T Consensus 103 DpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~ 182 (284)
T KOG1457|consen 103 DPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEA 182 (284)
T ss_pred ccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhh
Confidence 53 233321000 0 0
Q ss_pred ----------------------CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCH
Q 006726 211 ----------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (633)
Q Consensus 211 ----------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 268 (633)
.......+|||-||..++||++|+.+|+.|-....++|... . ....||+.|++.
T Consensus 183 l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~ 258 (284)
T KOG1457|consen 183 LSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEI 258 (284)
T ss_pred hhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHH
Confidence 00112358999999999999999999999987666666432 1 446899999999
Q ss_pred HHHHHHHHHhCCcee
Q 006726 269 RDAESAIQKFNGQKF 283 (633)
Q Consensus 269 ~~A~~A~~~l~g~~~ 283 (633)
+.|..||..|+|..|
T Consensus 259 ~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 259 EQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHhhccee
Confidence 999999999999876
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=131.96 Aligned_cols=80 Identities=34% Similarity=0.663 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.++|||+|||+.+++++|+++|..||.|..+.+..++.+|.++|||||.|.+.++|..|+..++|..+.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999754
No 80
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.43 E-value=1.1e-12 Score=127.38 Aligned_cols=226 Identities=20% Similarity=0.168 Sum_probs=158.1
Q ss_pred CCCccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcccccccc
Q 006726 6 GSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKH 85 (633)
Q Consensus 6 ~tg~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (633)
.-|+.-|+|.|.|.++|.-.-|++. +...+.+|.|.|..+.... ++...+..+..+..
T Consensus 97 ~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~---------------------f~~iagg~s~e~~~ 154 (508)
T KOG1365|consen 97 AQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEE---------------------FLKIAGGTSNEAAP 154 (508)
T ss_pred hhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchh---------------------heEecCCccccCCC
Confidence 3477889999999999999999999 8889999999998874321 11111111110000
Q ss_pred cchhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccC----CeEEEEeeCCchhhh
Q 006726 86 SSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIG----TVCSVTYPLPKEELE 161 (633)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G----~i~~~~~~~~~~~~~ 161 (633)
+..+ ...--|.+.+||+++++.++.++|..-- ..+.+-++.
T Consensus 155 ----------------------------flsk-~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~------ 199 (508)
T KOG1365|consen 155 ----------------------------FLSK-ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT------ 199 (508)
T ss_pred ----------------------------CCCc-ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE------
Confidence 0000 1112477899999999999999997322 223333321
Q ss_pred hccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEc-------------------------------cCCCC
Q 006726 162 QHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWAR-------------------------------QLGGE 210 (633)
Q Consensus 162 ~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~-------------------------------~~~~~ 210 (633)
..+|+..|-|||.|..+++|+.|+.+-. ..++-+-|.+- +..--
T Consensus 200 ----rpdgrpTGdAFvlfa~ee~aq~aL~khr-q~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~ 274 (508)
T KOG1365|consen 200 ----RPDGRPTGDAFVLFACEEDAQFALRKHR-QNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLV 274 (508)
T ss_pred ----CCCCCcccceEEEecCHHHHHHHHHHHH-HHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccC
Confidence 1478999999999999999999997532 22222211100 00000
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEE--EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWN--VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 287 (633)
.......+|.+++||+.++.++|..+|..|.. |.- |+++.+ ..|+..|-|||+|.+.++|..|....+.+.+..+.
T Consensus 275 p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 275 PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 11233679999999999999999999998865 322 666665 57999999999999999999999998888888999
Q ss_pred EEEEEec
Q 006726 288 IAVDWAV 294 (633)
Q Consensus 288 i~v~~~~ 294 (633)
|.|-.+.
T Consensus 354 iEvfp~S 360 (508)
T KOG1365|consen 354 IEVFPCS 360 (508)
T ss_pred EEEeecc
Confidence 9998764
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=2.6e-13 Score=120.98 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=79.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
+...-++|.|-||-+.++.++|+.+|++||.|-+|.|+.|.-|+.++|||||.|....+|+.|+++|+ |.+|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-----G~~ldgR 83 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-----GAVLDGR 83 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc-----ceeeccc
Confidence 34446799999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccC
Q 006726 501 QLTVLKALD 509 (633)
Q Consensus 501 ~l~V~~a~~ 509 (633)
.|.|++|.-
T Consensus 84 elrVq~ary 92 (256)
T KOG4207|consen 84 ELRVQMARY 92 (256)
T ss_pred eeeehhhhc
Confidence 999998863
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.4e-13 Score=124.39 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
+..-+.|||+||++.+..+.|+++|++||.|.+..|+.|+.+|+++|||||+|++.++|.+|++. -+-.|+||+-.|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34557999999999999999999999999999999999999999999999999999999999985 56788999999998
Q ss_pred ecC
Q 006726 293 AVP 295 (633)
Q Consensus 293 ~~~ 295 (633)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 754
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4.5e-14 Score=123.29 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=77.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
+.-|||+|||++.||.||..+|++||.|..|.+++|..||+++||||++|.+.-+..-|+..|| |..|.||.|+|
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N-----Giki~gRtirV 109 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN-----GIKILGRTIRV 109 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC-----CceecceeEEe
Confidence 4689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
+.....
T Consensus 110 DHv~~Y 115 (219)
T KOG0126|consen 110 DHVSNY 115 (219)
T ss_pred eecccc
Confidence 986544
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.1e-12 Score=131.14 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=72.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCH--HHHHHHHHhcCCCCCCCeEEcCe
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTV--EAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~--e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
..+.+|||+||++++|++||+.+|+.||.|..|.|+ +.+| ||||||+|.+. .++.+||..|| |..+.||
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLN-----GAEWKGR 78 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYN-----GCVWKGG 78 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhc-----CCeecCc
Confidence 346799999999999999999999999999999999 4467 99999999988 78999999999 9999999
Q ss_pred EEEEEEccCh
Q 006726 501 QLTVLKALDK 510 (633)
Q Consensus 501 ~l~V~~a~~k 510 (633)
.|+|..|++.
T Consensus 79 ~LKVNKAKP~ 88 (759)
T PLN03213 79 RLRLEKAKEH 88 (759)
T ss_pred eeEEeeccHH
Confidence 9999999873
No 85
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=7.4e-13 Score=109.84 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=81.3
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
....+..|||.++...+|+++|.+.|..||.|+.+++-.|..||..+|||+|+|.+.++|+.|+.++| |..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-----g~~ll~q 142 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-----GAELLGQ 142 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-----chhhhCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|+|+-.+.
T Consensus 143 ~v~VDw~Fv~g 153 (170)
T KOG0130|consen 143 NVSVDWCFVKG 153 (170)
T ss_pred ceeEEEEEecC
Confidence 99999987654
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.9e-12 Score=123.29 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+++.. ++|||||+|.++++|..||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56999999999999999999999999999999988743 57999999999999999996 899999999999999754
Q ss_pred C
Q 006726 296 K 296 (633)
Q Consensus 296 ~ 296 (633)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.2e-12 Score=121.73 Aligned_cols=83 Identities=23% Similarity=0.462 Sum_probs=78.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
.+-+||||.-|+++++|..|+..|+.||.|+.|+||.|+.||+++|||||+|.++-+-..|.+..+ |+.|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-----G~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-----GIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-----CceecCcEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
.|++-.-+
T Consensus 174 ~VDvERgR 181 (335)
T KOG0113|consen 174 LVDVERGR 181 (335)
T ss_pred EEEecccc
Confidence 99885543
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.5e-12 Score=119.23 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=70.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
+.+|||+||++.+|+++|+++|+.||.|.+|+|+++ +..+|||||+|.++++|..|+ .|| |..|.|++|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLn-----Ga~l~d~~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLS-----GATIVDQRVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcC-----CCeeCCceEEE
Confidence 689999999999999999999999999999999988 455689999999999999999 799 99999999999
Q ss_pred EEccC
Q 006726 505 LKALD 509 (633)
Q Consensus 505 ~~a~~ 509 (633)
..+..
T Consensus 76 t~~~~ 80 (243)
T PLN03121 76 TRWGQ 80 (243)
T ss_pred EeCcc
Confidence 99764
No 89
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.7e-12 Score=113.14 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...+.|||+||+..+++.+|...|..||+|.+|-|-++ ..|||||+|+++.+|..|+..|+|..|.|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 44789999999999999999999999999999988775 6699999999999999999999999999999999998
Q ss_pred cCCC
Q 006726 294 VPKN 297 (633)
Q Consensus 294 ~~~~ 297 (633)
.-..
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6543
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2.1e-13 Score=119.20 Aligned_cols=82 Identities=28% Similarity=0.429 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
...+..|||+|||+..||.||...|++||.|..|.+++|..||+++||||+.|++..+...|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ec
Q 006726 293 AV 294 (633)
Q Consensus 293 ~~ 294 (633)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 64
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=6.5e-12 Score=98.09 Aligned_cols=72 Identities=38% Similarity=0.565 Sum_probs=67.3
Q ss_pred EEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 427 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
+|||+|||..++.++|+++|++||.|..+.++.+. +.++|+|||.|.+.++|.+|+..++ |..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~-----~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALN-----GTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhC-----CcEECCEEEeeC
Confidence 58999999999999999999999999999888775 7789999999999999999999999 999999999873
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=4.2e-12 Score=131.24 Aligned_cols=84 Identities=35% Similarity=0.556 Sum_probs=80.6
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
+.|||+|+|+++++++|..+|+..|.|.+++++.|..+|+++||||++|.+.++|.+|++.|| |..+.||+|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-----g~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-----GAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-----CcccCCceEEee
Confidence 899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccChhhhc
Q 006726 506 KALDKKLAH 514 (633)
Q Consensus 506 ~a~~k~~~~ 514 (633)
|+...+...
T Consensus 94 ~~~~~~~~~ 102 (435)
T KOG0108|consen 94 YASNRKNAE 102 (435)
T ss_pred cccccchhH
Confidence 998765543
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=9.3e-12 Score=98.56 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
+...+.|||+|||+++|.+++.++|.+||+|..|+|-..+ ..+|-|||.|++..+|++|+..|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 4456789999999999999999999999999999996543 3789999999999999999999999999999999999
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
..+...
T Consensus 92 yq~~~~ 97 (124)
T KOG0114|consen 92 YQPEDA 97 (124)
T ss_pred cCHHHH
Confidence 876543
No 94
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3e-12 Score=106.23 Aligned_cols=85 Identities=26% Similarity=0.542 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....+.|||.++...+|+++|.+.|..||+|..+++-.++.+|-.+|||+|+|.+.++|+.|+..|||..+.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q 006726 292 WAVPK 296 (633)
Q Consensus 292 ~~~~~ 296 (633)
|+--+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 98544
No 95
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.32 E-value=2.8e-12 Score=114.50 Aligned_cols=83 Identities=33% Similarity=0.557 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
+....++|.|-||-+.++.++|+.+|++||.|-+|.|++++.|+.++|||||.|....+|+.|+.+|+|.+++|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
++.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 874
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=9.4e-12 Score=96.81 Aligned_cols=71 Identities=38% Similarity=0.550 Sum_probs=67.1
Q ss_pred ecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 430 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 430 V~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
|+|||..+++++|+++|++||.|..+.+..+..++.++|+|||.|.+.++|.+|+..++ +..++|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-----~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-----GKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-----CCeeCCcEEEeC
Confidence 67999999999999999999999999999888788999999999999999999999999 999999999873
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-12 Score=117.45 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=80.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||++|..++|+.-|...|=+||.|..|.++.|.++++.||||||+|...|+|..||..|| +..|.||.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-----esEL~Grtir 83 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-----ESELFGRTIR 83 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-----hhhhcceeEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccChh
Q 006726 504 VLKALDKK 511 (633)
Q Consensus 504 V~~a~~k~ 511 (633)
|.+|+|..
T Consensus 84 VN~AkP~k 91 (298)
T KOG0111|consen 84 VNLAKPEK 91 (298)
T ss_pred EeecCCcc
Confidence 99999854
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=5.9e-12 Score=125.95 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCH--HHHHHHHHHhCCceeCCeeEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK--RDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.....+|||+||++.+++++|+.+|..||.|.+|.|++ .+| +|||||+|.+. .++.+||..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34567999999999999999999999999999999995 466 89999999987 7899999999999999999999
Q ss_pred EEecCC
Q 006726 291 DWAVPK 296 (633)
Q Consensus 291 ~~~~~~ 296 (633)
..+++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998764
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.5e-12 Score=115.64 Aligned_cols=88 Identities=27% Similarity=0.431 Sum_probs=82.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||++|...+++.-|...|-+||.|..|.++.|..+++.||||||+|.-.|+|..||..||+..+.|+.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcc
Q 006726 292 WAVPKNIY 299 (633)
Q Consensus 292 ~~~~~~~~ 299 (633)
++.|....
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99986543
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=1.2e-11 Score=115.58 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+||++.+|+++|+++|+.||.|.+|.|+++ +...|||||+|.++++|..|+. |+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4679999999999999999999999999999999987 3466899999999999999996 89999999999998764
Q ss_pred C
Q 006726 295 P 295 (633)
Q Consensus 295 ~ 295 (633)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.29 E-value=3.2e-10 Score=118.22 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCc-EEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 424 LQN-TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 424 ~~~-~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
+++ .|-+.|+|++++-+||.++|..|-.+-.-.+++..+.|..+|-|.|.|.+.++|.+|...++ +..|..|.|
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~-----~~~i~nr~V 939 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLD-----GQKIRNRVV 939 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccc-----cCcccceeE
Confidence 345 88999999999999999999999776654455556789999999999999999999999999 999999999
Q ss_pred EEEE
Q 006726 503 TVLK 506 (633)
Q Consensus 503 ~V~~ 506 (633)
.|..
T Consensus 940 ~l~i 943 (944)
T KOG4307|consen 940 SLRI 943 (944)
T ss_pred EEEe
Confidence 8864
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=122.00 Aligned_cols=148 Identities=22% Similarity=0.291 Sum_probs=117.7
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
..+|||+|||..+++++|.++|.+||.|..+.++.++. .|.++|||||.|.+.++|..|+..+++..|.|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~---------~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRE---------TGKSRGFAFVEFESEESAEKAIEELNGKELEGR 185 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccc---------cCccCceEEEEecCHHHHHHHHHHcCCCeECCc
Confidence 58999999999999999999999999999999887763 488999999999999999999999999999999
Q ss_pred EEEEccCC----CC--------------------CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCC
Q 006726 201 TVWARQLG----GE--------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGL 256 (633)
Q Consensus 201 ~i~v~~~~----~~--------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 256 (633)
.|.|.... .. ........+++.+++..++..++...|..+|.+....+........
T Consensus 186 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (306)
T COG0724 186 PLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKI 265 (306)
T ss_pred eeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcc
Confidence 99987632 11 1123457899999999999999999999999997777665443333
Q ss_pred ceeEEEEEecCHHHHHHHHHH
Q 006726 257 SKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 257 ~~g~afV~f~~~~~A~~A~~~ 277 (633)
.....++.+.....+..+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 266 PKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred cccccccchhHHHhhhhhhcc
Confidence 434444454444444444443
No 103
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=9.6e-12 Score=108.53 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=70.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.+.|||+||+..+++.||..+|..||.|..|-|-.. +.|||||+|.++-+|..|+..|+ |..|+|..|.|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LD-----G~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLD-----GKDICGSRIRV 79 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcC-----CccccCceEEE
Confidence 689999999999999999999999999999866544 58999999999999999999999 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
.+..-+
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 987644
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.2e-11 Score=116.81 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
...+-+||||.-|+++++|..|+..|+.||+|..|.|+++..+|+++|||||+|..+-+...|.+..+|..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 753
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=2.2e-11 Score=95.09 Aligned_cols=72 Identities=44% Similarity=0.790 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 218 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
+|+|+|||..++.++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|..|+..++|..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998765 6788999999999999999999999999999998873
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.4e-13 Score=145.08 Aligned_cols=232 Identities=19% Similarity=0.166 Sum_probs=180.1
Q ss_pred ceEEEcCCCccccHH-HHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 122 RTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 122 ~tl~V~nlp~~~t~~-~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
+...+.++.+..... .....|..+|.|..+.++.-+. ......++++.+..+.++..|.. ..+..+.++
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~---------k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~ 641 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF---------KAHEQPQQQKVQSKHGSAESATV-PAGGALANR 641 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccc---------cccccchhhhhhccccchhhccc-ccccccCCc
Confidence 345666776665544 5778899999999999763211 11222368899999999998864 566667777
Q ss_pred EEEEccCCCCCC----------CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHH
Q 006726 201 TVWARQLGGEGS----------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD 270 (633)
Q Consensus 201 ~i~v~~~~~~~~----------~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 270 (633)
...+........ .....++||+||+..+.+.+|...|..+|.+..+.+......++.+|+|||.|..+++
T Consensus 642 ~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 642 SAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred cccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 666543322211 1223689999999999999999999999998888776555678899999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCc
Q 006726 271 AESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADF 350 (633)
Q Consensus 271 A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (633)
|.+|+....++.++
T Consensus 722 ~~aaV~f~d~~~~g------------------------------------------------------------------ 735 (881)
T KOG0128|consen 722 AGAAVAFRDSCFFG------------------------------------------------------------------ 735 (881)
T ss_pred hhhhhhhhhhhhhh------------------------------------------------------------------
Confidence 99999864333222
Q ss_pred hHHHHHHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEe
Q 006726 351 DEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFI 430 (633)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 430 (633)
...|||
T Consensus 736 --------------------------------------------------------------------------K~~v~i 741 (881)
T KOG0128|consen 736 --------------------------------------------------------------------------KISVAI 741 (881)
T ss_pred --------------------------------------------------------------------------hhhhhe
Confidence 137999
Q ss_pred cCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccC
Q 006726 431 CNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 431 ~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (633)
+|.|+..|.++|+.+|+++|++.+.+++... .|+++|.|||.|.++.+|.+++..+. +..+.-+.+.|....+
T Consensus 742 ~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d-----~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 742 SGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVD-----VAGKRENNGEVQVSNP 814 (881)
T ss_pred eCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccch-----hhhhhhcCccccccCC
Confidence 9999999999999999999999999877665 68999999999999999999999988 7778777777766554
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=6.9e-11 Score=92.77 Aligned_cols=74 Identities=39% Similarity=0.551 Sum_probs=68.4
Q ss_pred EEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEE
Q 006726 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (633)
Q Consensus 427 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~ 506 (633)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ .++|+|||.|.+.++|..|+..++ +..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~-----~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALN-----GKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEeC
Confidence 4899999999999999999999999999988877644 779999999999999999999999 9999999999864
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=3.2e-11 Score=93.78 Aligned_cols=71 Identities=38% Similarity=0.707 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 221 v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
|+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778899999999999999999999999999999998873
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=119.03 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=136.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.+.+-+++.+++..+.+++++|...- |..+.|..+...+...|-++|.|....++++|++. |...+-.|.+.+.....
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 46778889999999999999997532 45555655555555589999999999999999985 77777788888876543
Q ss_pred CCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCC
Q 006726 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (633)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (633)
....-............... .++
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~------------------------------------------------------~hg--- 411 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQN------------------------------------------------------NHG--- 411 (944)
T ss_pred cccccCccccccCCCCcccc------------------------------------------------------cCC---
Confidence 32211110000000000000 000
Q ss_pred CccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEE
Q 006726 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (633)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v 455 (633)
.|....+...............+.+|||..||..+++.++.++|..--.|++.
T Consensus 412 ---------------------------~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 412 ---------------------------RPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred ---------------------------CCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 00000000000000011234557899999999999999999999987788774
Q ss_pred EEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhh
Q 006726 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 456 ~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~ 512 (633)
..+...-+++.++.|||.|..++++..|+..-+ .+.++.|.|+|.....+..
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~-----k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKT-----KFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhccc-----ccccCceEEEeechhhHHH
Confidence 334444478889999999999999999987777 7888899999987665543
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=9.9e-11 Score=90.95 Aligned_cols=61 Identities=26% Similarity=0.511 Sum_probs=56.1
Q ss_pred HHHHHHHhh----hcCceEEEE-EeecCCC--CCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 439 NEEVKQRFS----AFGEVVSFV-PVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 439 e~~L~~~F~----~~G~V~~v~-i~~d~~~--~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
+++|+++|+ +||.|.++. ++.++.+ +.++|||||.|.+.++|.+|+..|| |..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-----g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-----GRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEe
Confidence 578899998 999999995 7777766 8999999999999999999999999 99999999986
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=9e-11 Score=86.91 Aligned_cols=56 Identities=34% Similarity=0.497 Sum_probs=50.4
Q ss_pred HHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEc
Q 006726 442 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (633)
Q Consensus 442 L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a 507 (633)
|+++|++||.|..+.+..+. +++|||+|.+.++|.+|+..|| |..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~-----~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLN-----GRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHT-----TSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEEC
Confidence 68999999999999776542 6999999999999999999999 99999999999986
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=1.8e-10 Score=90.28 Aligned_cols=74 Identities=39% Similarity=0.714 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 218 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999876543 6789999999999999999999999999999999864
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=5.6e-11 Score=122.97 Aligned_cols=81 Identities=32% Similarity=0.593 Sum_probs=78.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
+.|||+|+|+.+++++|..+|+..|.|.+++++.|+.+|+.+||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 006726 297 N 297 (633)
Q Consensus 297 ~ 297 (633)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=1.9e-10 Score=85.17 Aligned_cols=56 Identities=39% Similarity=0.726 Sum_probs=51.0
Q ss_pred HHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 233 l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
|+++|++||.|.++.+..+. +++|||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997642 589999999999999999999999999999999986
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=2.5e-10 Score=88.73 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=54.6
Q ss_pred HHHHHHhhc----cCCCeEEEE-EcccCCC--CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 230 VNEIKDMFS----PVGLVWNVY-IPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 230 ~~~l~~~F~----~~G~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
+++|+++|+ .||.|.++. ++.++.+ +.++|||||.|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 6555555 889999999999999999999999999999999986
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=4.7e-09 Score=107.08 Aligned_cols=187 Identities=22% Similarity=0.297 Sum_probs=127.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC---CCcee---EEEEEecCHHHHHHHHHHhCCceeCC
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKG---FAFVKFTCKRDAESAIQKFNGQKFGK 285 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g---~afV~f~~~~~A~~A~~~l~g~~~~g 285 (633)
...-.+.|||++||+.++|+.|...|..||.+. |.++..... -..+| |+|+.|+++.....-+.++ ....
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcc
Confidence 344568999999999999999999999999875 667642211 12345 9999999999888776653 3355
Q ss_pred eeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcc
Q 006726 286 RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLT 365 (633)
Q Consensus 286 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (633)
..+.++.+.+.-.-.. .+-..+. ..+.+|-..
T Consensus 331 ~~~yf~vss~~~k~k~------VQIrPW~------------------------------laDs~fv~d------------ 362 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKE------VQIRPWV------------------------------LADSDFVLD------------ 362 (520)
T ss_pred cceEEEEecCcccccc------eeEEeeE------------------------------eccchhhhc------------
Confidence 5555555443211000 0000000 000000000
Q ss_pred cCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHH
Q 006726 366 STTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQR 445 (633)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~ 445 (633)
......+.+||||++||--++.++|..+
T Consensus 363 ----------------------------------------------------~sq~lDprrTVFVGgvprpl~A~eLA~i 390 (520)
T KOG0129|consen 363 ----------------------------------------------------HNQPIDPRRTVFVGGLPRPLTAEELAMI 390 (520)
T ss_pred ----------------------------------------------------cCcccCccceEEecCCCCcchHHHHHHH
Confidence 0012344689999999999999999999
Q ss_pred hh-hcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc----CeEEEEEEcc
Q 006726 446 FS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----GRQLTVLKAL 508 (633)
Q Consensus 446 F~-~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~----gr~l~V~~a~ 508 (633)
|+ -||.|.++-|-.|++-+.++|-|-|.|.+..+-.+||.+-= ..|+ .++|.|++.+
T Consensus 391 md~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarF------vql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 391 MEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARF------VQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred HHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhhe------EEEeccccceeeeeccee
Confidence 98 79999999999998899999999999999999999997632 2222 3566666654
No 117
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=3e-09 Score=109.45 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=114.9
Q ss_pred cccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCee
Q 006726 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (633)
Q Consensus 118 ~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (633)
....++|+|-|||..+++++|+.+|+.||+|..|+. .-..+|..||+|.+..+|+.|++.|++..+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--------------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--------------TPNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--------------ccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999762 234578899999999999999999999999
Q ss_pred cCeEEEEccCCC-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC
Q 006726 198 KGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT 254 (633)
Q Consensus 198 ~g~~i~v~~~~~-----------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 254 (633)
.|+.|. ++.+. .........++.- |++......++..|.-+|.+.. +. +
T Consensus 138 ~~~~~k-~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~-----~ 209 (549)
T KOG4660|consen 138 AGKRIK-RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE-----T 209 (549)
T ss_pred hhhhhc-CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc-----c
Confidence 998776 22110 0011122333333 8888887777777777887664 22 2
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcc
Q 006726 255 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIY 299 (633)
Q Consensus 255 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 299 (633)
+.-..--|+.|.+..++..+...+ |..+.+....+.++.+...+
T Consensus 210 ~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~g~~ 253 (549)
T KOG4660|consen 210 PLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPGGVW 253 (549)
T ss_pred cchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCCCccc
Confidence 212224578888888886666643 77777888888888775544
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8e-10 Score=106.59 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=78.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
++...|||.-|.+-+|++||.-+|+.||.|.+|.|++|..||.+..||||+|.+.+++++|.-.|. +..|++|+|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd-----NvLIDDrRI 311 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD-----NVLIDDRRI 311 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc-----ceeeccceE
Confidence 345799999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccC
Q 006726 503 TVLKALD 509 (633)
Q Consensus 503 ~V~~a~~ 509 (633)
+|.++.+
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9999765
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.4e-10 Score=104.65 Aligned_cols=140 Identities=18% Similarity=0.249 Sum_probs=120.0
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecC
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g 199 (633)
..+||||+|+-..++++-|.++|-+.|+|..|.|+..++ +..+ ||||.|.++-+..-|+..+||..+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----------~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----------QEQK-FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----------CCCc-eeeeecccccchhhhhhhcccchhcc
Confidence 457899999999999999999999999999999886643 5555 99999999999999999999999998
Q ss_pred eEEEEccCCCCCCCCCCCEEEEcC----CCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 006726 200 GTVWARQLGGEGSKTQKWKLIIRN----IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (633)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (633)
..+.+. ++.++ |...++++.+...|+.-|++..+++.++. +|+++.++|+.+--..+.-.|+
T Consensus 77 ~e~q~~-------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 77 DEEQRT-------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFAL 142 (267)
T ss_pred chhhcc-------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHh
Confidence 888774 33344 66678999999999999999999999875 5889999999998888888888
Q ss_pred HHhCCceeC
Q 006726 276 QKFNGQKFG 284 (633)
Q Consensus 276 ~~l~g~~~~ 284 (633)
....+....
T Consensus 143 ~~y~~l~~~ 151 (267)
T KOG4454|consen 143 DLYQGLELF 151 (267)
T ss_pred hhhcccCcC
Confidence 776665443
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1e-08 Score=104.68 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=114.6
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCC--
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ-- 194 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~-- 194 (633)
-++.++.||||+||++++|+.|...|..||.+. |..+.... ..+.....-+.||+|+.|+++.++..-+..+.-
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~---~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKAN---SRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCcc---ccccCCCCCcccEEEEEecchHHHHHHHHHHhhcc
Confidence 456778899999999999999999999999743 33332111 111111111235999999999999887766532
Q ss_pred ---------CeecCeEEEEcc---------CCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhc-cCCCeEEEEEcccCCCC
Q 006726 195 ---------KEIKGGTVWARQ---------LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFS-PVGLVWNVYIPHNTDTG 255 (633)
Q Consensus 195 ---------~~~~g~~i~v~~---------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~ 255 (633)
..+..+.+.|++ ......-.+.+||||++||..++.++|..+|. -||.|..+-|-.|+.-+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 111122222221 01223456678999999999999999999999 59999999998887777
Q ss_pred CceeEEEEEecCHHHHHHHHHH
Q 006726 256 LSKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 256 ~~~g~afV~f~~~~~A~~A~~~ 277 (633)
-.+|-|-|+|.+..+-.+||.+
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 7899999999999999999985
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1e-10 Score=125.23 Aligned_cols=199 Identities=19% Similarity=0.142 Sum_probs=158.8
Q ss_pred EEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcccccccccchhhcc
Q 006726 13 FGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLES 92 (633)
Q Consensus 13 ~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (633)
++++.+....+|+.|... .|..+.++.+.|-.+.++....
T Consensus 616 ~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~ad~~~~~~--------------------------------------- 655 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVP-AGGALANRSAAVGLADAEEKEE--------------------------------------- 655 (881)
T ss_pred hhhhhhccccchhhcccc-cccccCCccccCCCCCchhhhh---------------------------------------
Confidence 888999999999998876 8888888888888875543110
Q ss_pred CCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCc
Q 006726 93 GKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKM 172 (633)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~ 172 (633)
+........+...++||+||++.+.+.+|...|..+|.+..+.+..-. ..++-+
T Consensus 656 -----------------~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~---------n~~~~r 709 (881)
T KOG0128|consen 656 -----------------NFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK---------NEKRFR 709 (881)
T ss_pred -----------------ccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh---------hccccc
Confidence 000111122455678999999999999999999999988777644111 346778
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccC
Q 006726 173 DASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (633)
Q Consensus 173 g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 252 (633)
|+||+.|..++++.+|+.......++ ...|+|+|.|+..|.++|+.+|+.+|.+.+.+++..+
T Consensus 710 G~~Y~~F~~~~~~~aaV~f~d~~~~g-----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 710 GKAYVEFLKPEHAGAAVAFRDSCFFG-----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred cceeeEeecCCchhhhhhhhhhhhhh-----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 99999999999999999865544332 4589999999999999999999999999999887764
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 253 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.|+.+|.|||.|.++.+|.+++....+..+.-+.+.|..+.|
T Consensus 773 -~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 -AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred -ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 789999999999999999999988888777777777777666
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.91 E-value=9.6e-10 Score=101.79 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=76.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
..+||.+.|.-+++++.|-..|.+|-.....++++|..||+++||+||.|.++.++.+|+..|| |..++.|+|.+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~-----gkyVgsrpikl 264 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN-----GKYVGSRPIKL 264 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc-----ccccccchhHh
Confidence 4699999999999999999999999999999999999999999999999999999999999999 99999999988
Q ss_pred EEccChh
Q 006726 505 LKALDKK 511 (633)
Q Consensus 505 ~~a~~k~ 511 (633)
....-++
T Consensus 265 RkS~wke 271 (290)
T KOG0226|consen 265 RKSEWKE 271 (290)
T ss_pred hhhhHHh
Confidence 6655443
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.91 E-value=1.1e-09 Score=108.64 Aligned_cols=178 Identities=18% Similarity=0.227 Sum_probs=141.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC-ceeCCeeEEEEE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG-QKFGKRPIAVDW 292 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~ 292 (633)
...+++|++++.+.+.+.+...++..+|......+........++|++++.|...+.+..|+.. .+ ..+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 3567999999999999999999999999877777766666788999999999999999999985 55 455666655554
Q ss_pred ecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCC
Q 006726 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (633)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (633)
......+.....
T Consensus 165 ~~~~~~~~~n~~-------------------------------------------------------------------- 176 (285)
T KOG4210|consen 165 NTRRGLRPKNKL-------------------------------------------------------------------- 176 (285)
T ss_pred cccccccccchh--------------------------------------------------------------------
Confidence 433321100000
Q ss_pred CCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEE-ecCCCCCCCHHHHHHHhhhcCc
Q 006726 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIF-ICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf-V~nLp~~~te~~L~~~F~~~G~ 451 (633)
.. .......++| |.||++.+++++|+.+|..+|.
T Consensus 177 --------------------------------------------~~-~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~ 211 (285)
T KOG4210|consen 177 --------------------------------------------SR-LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGE 211 (285)
T ss_pred --------------------------------------------cc-cccCccccceeecccccccchHHHhhhccCcCc
Confidence 00 0011123455 9999999999999999999999
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 452 V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
|..++++.++.++.++|||||.|.....+..++.. . ...+.|+++.+.+..++.
T Consensus 212 i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 212 ITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-Q-----TRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-c-----cCcccCcccccccCCCCc
Confidence 99999999999999999999999999999999987 7 789999999999987653
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.89 E-value=5e-09 Score=94.53 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=75.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhc-CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
....++|..+|..+.+.+|..+|.+| |.|..+++-+++.||.++|||||+|.+++.|.-|.+.|| ++-|+|+.|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-----NYLl~e~lL 122 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-----NYLLMEHLL 122 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-----hhhhhhhee
Confidence 34689999999999999999999998 778888888999999999999999999999999999999 999999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
.|.+-.+-
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99886654
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.4e-09 Score=103.39 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
..++...|||..|.+-+|.++|.-+|+.||+|.+|.|+++..+|.+..||||+|.+.+++++|.-.|.+..|+.++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+..-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9875443
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=7.6e-09 Score=100.22 Aligned_cols=81 Identities=27% Similarity=0.411 Sum_probs=70.5
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+||-..+++.+|+++|.+||.|++++++.. +++|||.|.+.++|+.|...+-. ...|+|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n----~lvI~G~ 293 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN----KLVINGF 293 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc----eeeecce
Confidence 3445689999999999999999999999999999988754 66999999999999998877431 6889999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.|+.++.
T Consensus 294 Rl~i~Wg~~~~ 304 (377)
T KOG0153|consen 294 RLKIKWGRPKQ 304 (377)
T ss_pred EEEEEeCCCcc
Confidence 99999999843
No 127
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=5.9e-10 Score=100.76 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=115.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||.|+...++++-|.++|-+.|+|..|.|+.++ .+..+ ||||.|.++....-|++.+||..+.+..+.+.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34456799999999999999999999999999999998875 45455 99999999999999999999999998888886
Q ss_pred EecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCC
Q 006726 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (633)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (633)
+-.-...
T Consensus 83 ~r~G~sh------------------------------------------------------------------------- 89 (267)
T KOG4454|consen 83 LRCGNSH------------------------------------------------------------------------- 89 (267)
T ss_pred cccCCCc-------------------------------------------------------------------------
Confidence 5321100
Q ss_pred CCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc
Q 006726 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 451 (633)
.- |...++++.+...|+.-|.
T Consensus 90 ------------------------------------------------------ap-----ld~r~~~ei~~~v~s~a~p 110 (267)
T KOG4454|consen 90 ------------------------------------------------------AP-----LDERVTEEILYEVFSQAGP 110 (267)
T ss_pred ------------------------------------------------------ch-----hhhhcchhhheeeecccCC
Confidence 00 3345777888889999999
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 452 V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
+..+++..+. +|+++.++||.+...-+.-.++....
T Consensus 111 ~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 111 IEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred CCCccccccc-cCCccCccchhhhhhhcCcHHhhhhc
Confidence 9999998886 48899999999988777777776655
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=9.2e-09 Score=92.86 Aligned_cols=85 Identities=25% Similarity=0.331 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccC-CCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.......++|..+|.-+.+.++..+|.++ |.|..+++.|++.||.++|||||+|.+++.|.-|-+.||+..+.|+.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556789999999999999999999998 77888899899999999999999999999999999999999999999999
Q ss_pred EEecCC
Q 006726 291 DWAVPK 296 (633)
Q Consensus 291 ~~~~~~ 296 (633)
.+-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998665
No 129
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.83 E-value=1.6e-08 Score=106.21 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=116.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecC---CCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ---VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~---~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
.+..++|||.||++.++++.|...|..||+|..++|+.-. +..+.+.+|||.|.+..+|++|++.|+ |..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-----g~iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-----GIIVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-----ceeee
Confidence 4457899999999999999999999999999999998654 345678899999999999999999999 99999
Q ss_pred CeEEEEEEccChhhhchhhhhhccccccccccccccccCcccCCCCcCCCCChhHHHHHHHHHHHHHhhcCCCCCcccCc
Q 006726 499 GRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRT 578 (633)
Q Consensus 499 gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~s~~ 578 (633)
+..+++.|++.=.-......- -..--..++.....+++.++.+.. -..+.++|...-++
T Consensus 246 ~~e~K~gWgk~V~ip~~p~~i---pp~~h~~~lp~p~s~Lpfnaqp~p------------------~~~~pn~N~e~~~~ 304 (877)
T KOG0151|consen 246 EYEMKLGWGKAVPIPNIPIYI---PPPLHEATLPPPPSNLPFNAQPGP------------------PKSLPNQNAELVNT 304 (877)
T ss_pred eeeeeeccccccccCCccccC---CChhhhccCCCCccCCcccCCCCc------------------cccCCCccccccCc
Confidence 999999998532110000000 000001111122222222222211 01233333222222
Q ss_pred EEEEeCCCCC----CCHHHHHHHHHHHHHhhhcccCcceeeeeeecccCccccceeecC
Q 006726 579 RLVIYNLPKS----MTEKGLKKLCIDAVVSRASKQKPVIKQVCYLFSFSLYWPIYKVTF 633 (633)
Q Consensus 579 ~l~i~NlP~~----~te~~l~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 633 (633)
-|++.- -+++-|..++... .......|+.|+..+..++..+|+|++.|
T Consensus 305 ----edv~~i~Vvip~d~~L~~vidrM---~~fV~~egp~fea~im~re~~nplF~flf 356 (877)
T KOG0151|consen 305 ----EDVEDILVVIPTDRHLLMVIDRM---AEFVVREGPMFEAMIMERERGNPLFSFLF 356 (877)
T ss_pred ----CCccceeEecCchHHHHHHHHHH---HHHHhccCccHHHHHHHhhccChhHHHHH
Confidence 233322 2556666666421 12345678999999999999999999876
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.80 E-value=1.4e-08 Score=103.79 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=79.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
....+++|+|.+|...+-..||+++|++||.|.-.+|+.+..+...++||||++.+.++|.+||..|+ ...|.||
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-----rTELHGr 475 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-----RTELHGR 475 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-----hhhhcce
Confidence 35567899999999999999999999999999999999998777889999999999999999999999 9999999
Q ss_pred EEEEEEccCh
Q 006726 501 QLTVLKALDK 510 (633)
Q Consensus 501 ~l~V~~a~~k 510 (633)
.|.|..|+..
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999998764
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=4.4e-09 Score=113.43 Aligned_cols=165 Identities=18% Similarity=0.189 Sum_probs=137.8
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCe
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~ 196 (633)
...+.+|||+|||+..+++.+|+..|..+|.|..|.+-..+ -+....||||.|.+..-+-.|...+.+..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----------~~~esa~~f~~~~n~dmtp~ak~e~s~~~ 437 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----------IKTESAYAFVSLLNTDMTPSAKFEESGPL 437 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----------CCcccchhhhhhhccccCcccchhhcCCc
Confidence 45778899999999999999999999999999998865432 25556789999999999999998888888
Q ss_pred ecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHH
Q 006726 197 IKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQ 276 (633)
Q Consensus 197 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 276 (633)
|....+.+..... .....+.+|+++|+..+....|...|..||+|..|.+-. ..-||+|+|.+...|+.|+.
T Consensus 438 I~~g~~r~glG~~--kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 438 IGNGTHRIGLGQP--KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATH 509 (975)
T ss_pred cccCccccccccc--ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHH
Confidence 8766655543222 556778999999999999999999999999999876633 33699999999999999999
Q ss_pred HhCCceeCC--eeEEEEEecCCCcc
Q 006726 277 KFNGQKFGK--RPIAVDWAVPKNIY 299 (633)
Q Consensus 277 ~l~g~~~~g--~~i~v~~~~~~~~~ 299 (633)
.|-|..|+| +++.|.|+.+....
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHhcCcCCCCCcccccccccCCCCC
Confidence 999999965 67999998765443
No 132
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.76 E-value=8.5e-09 Score=102.23 Aligned_cols=169 Identities=18% Similarity=0.258 Sum_probs=133.9
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
....++|++++...+.+.+...++..+|......+.... ....++|++++.|...+.+..|+.......+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~---------~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~ 156 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE---------DSLSSKGGLSVHFAGKSQFFAALEESGSKVLD 156 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhc---------cccccccceeeccccHHHHHHHHHhhhccccc
Confidence 356789999999999999999999999977666544322 24678999999999999999999754433444
Q ss_pred CeEEEE-----cc-----CCCCCCCCCCCEEE-EcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecC
Q 006726 199 GGTVWA-----RQ-----LGGEGSKTQKWKLI-IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (633)
Q Consensus 199 g~~i~v-----~~-----~~~~~~~~~~~~l~-v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (633)
+..+.. +. ...........++| |++|++.+++++|+.+|..+|.|..++++.+..++.+.|||||.|..
T Consensus 157 ~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 157 GNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 443321 11 00011223344555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 268 ~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
...+..|+.. +...+.++++.+.+..+..
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred chhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999987 8889999999999887654
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.75 E-value=1.4e-08 Score=107.77 Aligned_cols=79 Identities=19% Similarity=0.418 Sum_probs=72.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..++||||++|+..+++.||.++|+.||.|.+|.++ .++|+|||++....+|.+|+.+|+ ...+.++.|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~-----n~kv~~k~I 487 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLS-----NVKVADKTI 487 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHh-----cccccceee
Confidence 457899999999999999999999999999998664 359999999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
+|.||+.+-.
T Consensus 488 ki~Wa~g~G~ 497 (894)
T KOG0132|consen 488 KIAWAVGKGP 497 (894)
T ss_pred EEeeeccCCc
Confidence 9999997643
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=3.5e-08 Score=95.66 Aligned_cols=78 Identities=29% Similarity=0.427 Sum_probs=68.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH-hCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK-FNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g~~~~g~~i~v 290 (633)
......+|||++|-..+++.+|+++|-+||+|.++.+.. .+++|||+|.+.++|+.|... +|...|+|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 445668999999999999999999999999999999876 447999999999999998876 4555679999999
Q ss_pred EEecC
Q 006726 291 DWAVP 295 (633)
Q Consensus 291 ~~~~~ 295 (633)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.71 E-value=2.5e-08 Score=105.97 Aligned_cols=79 Identities=28% Similarity=0.506 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
++||||++|+..+++.+|.++|+.||.|.+|.++. ++|||||.+....+|.+|+.+|+...+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 58999999999999999999999999999998865 789999999999999999999999999999999999977
Q ss_pred CCccc
Q 006726 296 KNIYS 300 (633)
Q Consensus 296 ~~~~~ 300 (633)
+....
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65443
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.63 E-value=3.5e-08 Score=91.58 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=116.4
Q ss_pred EEEcCCCccccHHH-H--HHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 124 VIIGGLLNADMAEE-V--HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 124 l~V~nlp~~~t~~~-l--~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
++++++-..+..+- | ...|+.+-......+..+ ..+.-.+++|+.|.....-.++-..-+++.+.-.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~----------~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~ 168 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD----------RPQPIRPEAFESFKASDALLKAETEKEKKKIGKP 168 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhc----------CCCccCcccccCcchhhhhhhhccccccccccCc
Confidence 45555544444332 2 445555544333333322 2366688999988876666666555566666655
Q ss_pred EEEEccCC------CCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHH
Q 006726 201 TVWARQLG------GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274 (633)
Q Consensus 201 ~i~v~~~~------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 274 (633)
+++..... --.......+||.+.|...++.+.|-..|.+|-.....+++++..+|+++||+||.|.++.++..|
T Consensus 169 ~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 169 PVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 54432111 112345668999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEEe
Q 006726 275 IQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 275 ~~~l~g~~~~g~~i~v~~~ 293 (633)
+..|+|..++.++|.+.-+
T Consensus 249 mrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHhhcccccccchhHhhhh
Confidence 9999999999999988654
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.59 E-value=9.3e-08 Score=97.81 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...++|||.+|...+-..+|+++|++||.|+..+|+.+..+.-.++|+||++.+.++|.+||..|+.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34579999999999999999999999999999999987666667899999999999999999999999999999999988
Q ss_pred cCC
Q 006726 294 VPK 296 (633)
Q Consensus 294 ~~~ 296 (633)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 653
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=2.1e-07 Score=88.71 Aligned_cols=83 Identities=23% Similarity=0.402 Sum_probs=74.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
...|+|.|||+.++++||+++|..||.+..+-+-+++ .|.+.|.|-|.|...++|.+|++.+| |..++|++|++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~-----gv~ldG~~mk~ 156 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYN-----GVALDGRPMKI 156 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhc-----CcccCCceeee
Confidence 4789999999999999999999999988888655554 89999999999999999999999999 99999999999
Q ss_pred EEccChhhh
Q 006726 505 LKALDKKLA 513 (633)
Q Consensus 505 ~~a~~k~~~ 513 (633)
....+....
T Consensus 157 ~~i~~~~~~ 165 (243)
T KOG0533|consen 157 EIISSPSQS 165 (243)
T ss_pred EEecCcccc
Confidence 987765443
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.55 E-value=4.6e-07 Score=73.76 Aligned_cols=78 Identities=28% Similarity=0.435 Sum_probs=69.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC----CeeEEE
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAV 290 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v 290 (633)
+||.|+|||...|.++|.+++.. .|...-+.+|.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999998876 466777889999889999999999999999999999999999884 567788
Q ss_pred EEec
Q 006726 291 DWAV 294 (633)
Q Consensus 291 ~~~~ 294 (633)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8874
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.55 E-value=4.7e-07 Score=73.69 Aligned_cols=79 Identities=22% Similarity=0.173 Sum_probs=69.8
Q ss_pred cEEEecCCCCCCCHHHHHHHhhh--cCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc----C
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSA--FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----G 499 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~--~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~----g 499 (633)
+||.|+|||-..|.++|.+++.. .|....+.++.|..++-+.|||||.|.+++.|.+-.+.++ |..+. .
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~-----g~~w~~~~s~ 76 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN-----GKKWPNFNSK 76 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc-----CCccccCCCC
Confidence 69999999999999999999864 3778889999999999999999999999999999999999 77765 5
Q ss_pred eEEEEEEccC
Q 006726 500 RQLTVLKALD 509 (633)
Q Consensus 500 r~l~V~~a~~ 509 (633)
+...|.||.-
T Consensus 77 Kvc~i~yAri 86 (97)
T PF04059_consen 77 KVCEISYARI 86 (97)
T ss_pred cEEEEehhHh
Confidence 6778888753
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.50 E-value=2.2e-07 Score=95.92 Aligned_cols=80 Identities=26% Similarity=0.335 Sum_probs=69.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
...+|||+|||++++..+|.++|..||.|+...|....-.+...+||||+|.+.++++.|+.+- -..++|++|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As------p~~ig~~kl~ 360 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS------PLEIGGRKLN 360 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC------ccccCCeeEE
Confidence 3556999999999999999999999999999888776433444599999999999999999875 4899999999
Q ss_pred EEEccC
Q 006726 504 VLKALD 509 (633)
Q Consensus 504 V~~a~~ 509 (633)
|.--++
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 987554
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=1e-07 Score=103.10 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=130.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
..+.+||++||+..+++.+|+..|..+|.|.+|.|-... -+...-||||.|.+...+-.|...+.+..|....+++-+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 446799999999999999999999999999999885532 3445678999999999999999988888776554444433
Q ss_pred cCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCC
Q 006726 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (633)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (633)
.++
T Consensus 449 ~~k----------------------------------------------------------------------------- 451 (975)
T KOG0112|consen 449 QPK----------------------------------------------------------------------------- 451 (975)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 221
Q ss_pred CCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceE
Q 006726 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (633)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~ 453 (633)
....+.+++++|+.-+.-..|...|..||.|.
T Consensus 452 ------------------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir 483 (975)
T KOG0112|consen 452 ------------------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIR 483 (975)
T ss_pred ------------------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcce
Confidence 12247999999999999999999999999999
Q ss_pred EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC--eEEEEEEccCh
Q 006726 454 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDK 510 (633)
Q Consensus 454 ~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--r~l~V~~a~~k 510 (633)
.|.+ + ..--||+|.|.+...|+.|+..|. |..|+| ++|.|.+|.+-
T Consensus 484 ~Idy--~----hgq~yayi~yes~~~aq~a~~~~r-----gap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 484 IIDY--R----HGQPYAYIQYESPPAAQAATHDMR-----GAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eeec--c----cCCcceeeecccCccchhhHHHHh-----cCcCCCCCcccccccccCC
Confidence 8644 2 224599999999999999999999 888875 77999998764
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.41 E-value=8.7e-07 Score=84.60 Aligned_cols=85 Identities=27% Similarity=0.457 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....+.|+|.|||+.++.+||+++|..||.+..+-+-.+ ..|.+.|.|-|.|...++|..|++.+||..++|++|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 345579999999999999999999999998888888776 4799999999999999999999999999999999999998
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 866544
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.27 E-value=1.3e-06 Score=90.42 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
..+|||+|||++++..+|+++|..||.|....|......++..+||||+|.+.++++.||++ +-..++++++.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45699999999999999999999999999988866433344559999999999999999997 78888999999986544
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.24 E-value=1e-06 Score=86.66 Aligned_cols=196 Identities=17% Similarity=0.150 Sum_probs=119.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 218 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
.|-|.||.+++|.++++.+|...|.|..+.|...... ......|||.|.+...+..|.. |.++.+-++.|.|-.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 8999999999999999999999999999988663322 2345789999999999999976 68888877777776553
Q ss_pred CCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCC
Q 006726 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (633)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (633)
..... ..|.-.+-....++..++...|.||..
T Consensus 88 ~~~~p------------------------------------------------~r~af~~l~~~navprll~pdg~Lp~~ 119 (479)
T KOG4676|consen 88 DEVIP------------------------------------------------DRFAFVELADQNAVPRLLPPDGVLPGD 119 (479)
T ss_pred CCCCc------------------------------------------------cHHHHHhcCcccccccccCCCCccCCC
Confidence 21100 000000000001111111111222211
Q ss_pred CCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccC---CCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc
Q 006726 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQT---EGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 451 (633)
.... .+. -.|. .....|.+.+. ..-.....+++|.+|+..+...++.+.|..+|.
T Consensus 120 ~~lt-----------------~~n---h~p~--ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Ge 177 (479)
T KOG4676|consen 120 RPLT-----------------KIN---HSPN--AILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGE 177 (479)
T ss_pred Cccc-----------------ccc---CCcc--ceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcch
Confidence 1100 000 0000 00000000000 001122378999999999999999999999999
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 452 V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
|.+.++- .+-..-+|-|.|....+...|+..++
T Consensus 178 v~ya~~a----sk~~s~~c~~sf~~qts~~halr~~g 210 (479)
T KOG4676|consen 178 VSYAHTA----SKSRSSSCSHSFRKQTSSKHALRSHG 210 (479)
T ss_pred hhhhhhh----ccCCCcchhhhHhhhhhHHHHHHhcc
Confidence 9987654 33445677799999888888886653
No 146
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.23 E-value=1.6e-06 Score=83.19 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=75.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
...+||+|+.+.+|.+++..+|+.||.|..+.++.|..+|.++|||||+|.+.+.+..|+. |+ |..|.|+.+.|
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-----gs~i~~~~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-----GSEIPGPAIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-----Cccccccccee
Confidence 5699999999999999999999999999999999999999999999999999999999998 99 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
.+...+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 997654
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.22 E-value=2.1e-06 Score=82.43 Aligned_cols=84 Identities=23% Similarity=0.370 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.......+||+|+.+.+|.+++..+|+.||.|..+.++.+...|.++|||||.|.+.+.+..|+. |+|..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34556799999999999999999999999999999999999888999999999999999999999 89999999999999
Q ss_pred EecCC
Q 006726 292 WAVPK 296 (633)
Q Consensus 292 ~~~~~ 296 (633)
+..-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87543
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.19 E-value=3.1e-06 Score=89.44 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccC---CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT---DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
.+..++|||+||++.++++.|...|+.||+|.+++|+..+ ...+.+-||||-|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 5677899999999999999999999999999999987543 2234567899999999999999999999999999999
Q ss_pred EEEecC
Q 006726 290 VDWAVP 295 (633)
Q Consensus 290 v~~~~~ 295 (633)
+-|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999844
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=1.6e-06 Score=89.67 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=64.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
.....+|+|-|||..+++++|+.+|+.||.|+.|+. +-..+|..||+|.+.-+|++|+++|| +..|.|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~-----~~~~~~~~ 141 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALN-----RREIAGKR 141 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHH-----HHHhhhhh
Confidence 344679999999999999999999999999999754 44568999999999999999999999 99999988
Q ss_pred EE
Q 006726 502 LT 503 (633)
Q Consensus 502 l~ 503 (633)
|.
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 87
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.12 E-value=2e-07 Score=92.30 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=123.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc-eeCCeeEEEEEecC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-KFGKRPIAVDWAVP 295 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~~~~ 295 (633)
..+|++||.+.++..+|..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|. .+.|.++.|.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999998641111111111 3489999999999999999999997 46899999998876
Q ss_pred CCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCC
Q 006726 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (633)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (633)
+..+
T Consensus 76 kkqr---------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 76 KKQR---------------------------------------------------------------------------- 79 (584)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5432
Q ss_pred CccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEE
Q 006726 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (633)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v 455 (633)
++.+-|+|+|+..-.+-|-.+..+||.|+.|
T Consensus 80 -------------------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~ 110 (584)
T KOG2193|consen 80 -------------------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENC 110 (584)
T ss_pred -------------------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHh
Confidence 2457899999999999999999999999998
Q ss_pred EEe-ecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhh
Q 006726 456 VPV-LHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 456 ~i~-~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~ 512 (633)
..+ ++.+ ....-|.|.+.+.+..|+..+| |..|....++|.|-.....
T Consensus 111 eqvnt~~e----tavvnvty~~~~~~~~ai~kl~-----g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 111 EQVNTDSE----TAVVNVTYSAQQQHRQAIHKLN-----GPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred hhhccchH----HHHHHHHHHHHHHHHHHHHhhc-----chHhhhhhhhcccCchhhh
Confidence 543 2322 3334578999999999999999 9999999999998765443
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.12 E-value=9.3e-06 Score=62.63 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=47.5
Q ss_pred CEEEEcCCCCCCCHHH----HHHhhccCCC-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 217 WKLIIRNIPFKAKVNE----IKDMFSPVGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~----l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
+.|+|.|||.+.+... |+.++..+|. |.+| +.+.|+|.|.+++.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4799999999888654 5667777875 5544 12569999999999999999999999999999999
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.05 E-value=6.5e-06 Score=68.86 Aligned_cols=77 Identities=27% Similarity=0.337 Sum_probs=47.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
|+.|+|.+++..++.++|+++|+.||.|.+|.+... -..|||.|.++++|+.|+..+....+++..+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 468999999999999999999999999999876432 34799999999999999998874333356777777666
Q ss_pred EEc
Q 006726 505 LKA 507 (633)
Q Consensus 505 ~~a 507 (633)
..-
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 553
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.97 E-value=2.2e-05 Score=60.63 Aligned_cols=68 Identities=26% Similarity=0.383 Sum_probs=48.0
Q ss_pred cEEEecCCCCCCCHH----HHHHHhhhcC-ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 426 NTIFICNLPFDLDNE----EVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 426 ~~lfV~nLp~~~te~----~L~~~F~~~G-~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
..|+|.|||.+.+.. .|+.++.-+| .|..| +.+.|+|.|.+++.|.+|.+.|+ |-.+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRme-----gEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRME-----GEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHT-----T--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhc-----ccccccc
Confidence 479999999998865 5566666775 56665 25789999999999999999999 9999999
Q ss_pred EEEEEEcc
Q 006726 501 QLTVLKAL 508 (633)
Q Consensus 501 ~l~V~~a~ 508 (633)
+|.|.+..
T Consensus 68 kI~v~~~~ 75 (90)
T PF11608_consen 68 KISVSFSP 75 (90)
T ss_dssp --EEESS-
T ss_pred eEEEEEcC
Confidence 99999974
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.75 E-value=1.6e-05 Score=78.51 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=114.1
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEE
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i 202 (633)
.|.|.||.+.+|.++++.||...|.|..+.|+...... .-......|||.|.+...+..|- .|.+..+-+..|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~------~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdral 81 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDS------KIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRAL 81 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCc------cCcceeeeEEEeccCCcceeHHh-hhccceeeeeeE
Confidence 68999999999999999999999999999976433210 11223467999999999888774 578888888877
Q ss_pred EEccCCCCC-------------------------------C-------------------------CCCCCEEEEcCCCC
Q 006726 203 WARQLGGEG-------------------------------S-------------------------KTQKWKLIIRNIPF 226 (633)
Q Consensus 203 ~v~~~~~~~-------------------------------~-------------------------~~~~~~l~v~nlp~ 226 (633)
.|.+..... . ..-..+++|.+|+.
T Consensus 82 iv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~ 161 (479)
T KOG4676|consen 82 IVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLIS 161 (479)
T ss_pred EEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchh
Confidence 765432100 0 00126799999999
Q ss_pred CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 227 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
.|...++-+.|..+|.|...++-. |...-+|-+.|....+...|+.. +|..+.
T Consensus 162 ~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 162 AAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 999999999999999988776643 33556788999999999999984 787765
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.70 E-value=2.6e-05 Score=76.91 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=75.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~ 496 (633)
.-+|||.+||..+++++|.++|.++|.|.. |.|-++++|+.++|-|.|.|.++..|+.|+..++ +..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-----gkd 140 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-----GKD 140 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-----ccc
Confidence 469999999999999999999999998764 6677888999999999999999999999999999 999
Q ss_pred EcCeEEEEEEccChh
Q 006726 497 LKGRQLTVLKALDKK 511 (633)
Q Consensus 497 l~gr~l~V~~a~~k~ 511 (633)
|.|..|.|..|..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999988765
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.68 E-value=3.5e-06 Score=83.73 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=116.9
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCC-eecCeE
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EIKGGT 201 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~-~~~g~~ 201 (633)
.+|++||.+.++..+|..+|...- ++.... --...|||||.+.+..-|.+|++.++|+ .+.|+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~~~~g~---------fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------IPGSGQ---------FLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------CCCCcc---------eeeecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 389999999999999999998652 111111 0112589999999999999999999885 677888
Q ss_pred EEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 006726 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (633)
Q Consensus 202 i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 281 (633)
+.+..+-+ .....+.+-|+|+|+....+-|..+...||.+..|..+... + -.-.-=|+|.+.+.++.||..|+|.
T Consensus 68 ~e~~~sv~--kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~-~--etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 68 QEVEHSVP--KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD-S--ETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred eeccchhh--HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc-h--HHHHHHHHHHHHHHHHHHHHhhcch
Confidence 77754332 33445569999999999999999999999999988664321 1 1122347899999999999999999
Q ss_pred eeCCeeEEEEEe
Q 006726 282 KFGKRPIAVDWA 293 (633)
Q Consensus 282 ~~~g~~i~v~~~ 293 (633)
.+....+.|.|-
T Consensus 143 Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 143 QLENQHLKVGYI 154 (584)
T ss_pred HhhhhhhhcccC
Confidence 999999999886
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.45 E-value=0.00029 Score=58.95 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=43.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc-----eeCCeeEEEE
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-----KFGKRPIAVD 291 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~~g~~i~v~ 291 (633)
+.|.|.+++..++-++|++.|+.||.|..|.+.+.. ..|||.|.++++|+.|+..+.-. .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999998886632 35899999999999999876543 4455555544
Q ss_pred E
Q 006726 292 W 292 (633)
Q Consensus 292 ~ 292 (633)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.44 E-value=0.00028 Score=68.51 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=64.7
Q ss_pred CCCEEEEcCCCCCCCHHHH------HHhhccCCCeEEEEEcccCCCC-Ccee-E-EEEEecCHHHHHHHHHHhCCceeCC
Q 006726 215 QKWKLIIRNIPFKAKVNEI------KDMFSPVGLVWNVYIPHNTDTG-LSKG-F-AFVKFTCKRDAESAIQKFNGQKFGK 285 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l------~~~F~~~G~i~~v~i~~~~~~~-~~~g-~-afV~f~~~~~A~~A~~~l~g~~~~g 285 (633)
+..-+||-+||+.+..+++ .++|++||.|..|.|-+...+. ...+ + .||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4457899999998876662 5799999999998886543111 1122 2 3999999999999999999999999
Q ss_pred eeEEEEEecCC
Q 006726 286 RPIAVDWAVPK 296 (633)
Q Consensus 286 ~~i~v~~~~~~ 296 (633)
+.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999997654
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.00028 Score=66.33 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=66.4
Q ss_pred EEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEE
Q 006726 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (633)
Q Consensus 427 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~ 506 (633)
.|+|.||+.-+..+.|..-|+.||.|....++.|. .+++.+-++|.|...-.|.+|+..++.. +.+....+++.-|.+
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~-g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREG-GFGGTTGGRPVGVEP 110 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccC-ccccCCCCCccCCCh
Confidence 79999999999999999999999999998777764 6889999999999999999999988622 224556677776655
Q ss_pred cc
Q 006726 507 AL 508 (633)
Q Consensus 507 a~ 508 (633)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.39 E-value=0.00037 Score=67.67 Aligned_cols=81 Identities=21% Similarity=0.418 Sum_probs=62.7
Q ss_pred CcEEEecCCCCCCCHHHH------HHHhhhcCceEEEEEeecCCCCC-Cce-E-EEEEecCHHHHHHHHHhcCCCCCCCe
Q 006726 425 QNTIFICNLPFDLDNEEV------KQRFSAFGEVVSFVPVLHQVTKR-PKG-T-GFLKFKTVEAATAAVSASKTTSGLGI 495 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L------~~~F~~~G~V~~v~i~~d~~~~~-~~g-~-afV~f~~~e~A~~A~~~ln~~~~~g~ 495 (633)
..-+||-+||+.+..+++ .++|.+||.|..|.|-+...... ..+ + .||.|.+.++|.+||.+.+ |.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-----gs 188 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-----GS 188 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc-----cc
Confidence 457899999999877763 48999999999864433221111 112 2 3999999999999999999 99
Q ss_pred EEcCeEEEEEEccCh
Q 006726 496 FLKGRQLTVLKALDK 510 (633)
Q Consensus 496 ~l~gr~l~V~~a~~k 510 (633)
.++||.|+..+...|
T Consensus 189 ~~DGr~lkatYGTTK 203 (480)
T COG5175 189 LLDGRVLKATYGTTK 203 (480)
T ss_pred cccCceEeeecCchH
Confidence 999999999997764
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.31 E-value=0.00022 Score=70.46 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
.....+|||-+||..+++.+|.++|.++|.|. .|.|-+++.|+..+|-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 55667999999999999999999999999874 3667778889999999999999999999999999999999
Q ss_pred CeeEEEEEecCCC
Q 006726 285 KRPIAVDWAVPKN 297 (633)
Q Consensus 285 g~~i~v~~~~~~~ 297 (633)
|..|.|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887665
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.00075 Score=63.58 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=54.5
Q ss_pred eEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCC
Q 006726 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 195 (633)
Q Consensus 123 tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~ 195 (633)
.|+|.||+..+..+.+...|+.||+|....+..+- .++..+-++|.|...-.|.+|+..+.-.
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----------r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----------RGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecc----------cccccccchhhhhcchhHHHHHHHhccC
Confidence 38999999999999999999999999987766543 4777888999999999999999877443
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.05 E-value=0.0016 Score=46.89 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=41.8
Q ss_pred ceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHH
Q 006726 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASV 189 (633)
Q Consensus 122 ~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~ 189 (633)
++|-|.|.|++..+ .+..+|..||+|..+.++. .....||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~---------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE---------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC---------------CCcEEEEEECCHHHHHhhC
Confidence 57889999977664 4555999999999998641 2346999999999999985
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.04 E-value=0.0012 Score=47.66 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (633)
+.|-|.+.+.... +.+..+|..||.|..+.+.. ..-+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 5788999987766 45666999999999988862 3357999999999999985
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0024 Score=66.52 Aligned_cols=81 Identities=23% Similarity=0.478 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCC------HHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-CCe
Q 006726 214 TQKWKLIIRNIPFKAK------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKR 286 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g~ 286 (633)
.-...|+|-|+|---. ..-|..+|+++|+|....++.+...| ++||.|++|.+..+|+.|++.|||..+ ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4456899999985221 34567789999999999999886555 999999999999999999999999998 467
Q ss_pred eEEEEEecC
Q 006726 287 PIAVDWAVP 295 (633)
Q Consensus 287 ~i~v~~~~~ 295 (633)
.+.|..-+.
T Consensus 135 tf~v~~f~d 143 (698)
T KOG2314|consen 135 TFFVRLFKD 143 (698)
T ss_pred eEEeehhhh
Confidence 777765443
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0025 Score=66.36 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCcEEEecCCCCCCC------HHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE
Q 006726 423 ELQNTIFICNLPFDLD------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~t------e~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~ 496 (633)
.....|+|-|+|---. ..-|..+|+++|.|....++.+.++| ++||.|++|.+..+|+.|++.|| |+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~-----G~~ 129 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLN-----GKR 129 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcc-----cce
Confidence 3457999999985322 34567899999999999888887655 99999999999999999999999 988
Q ss_pred Ec-CeEEEEEEc
Q 006726 497 LK-GRQLTVLKA 507 (633)
Q Consensus 497 l~-gr~l~V~~a 507 (633)
|+ ++.+.|..-
T Consensus 130 ldknHtf~v~~f 141 (698)
T KOG2314|consen 130 LDKNHTFFVRLF 141 (698)
T ss_pred ecccceEEeehh
Confidence 87 456666543
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.93 E-value=0.0026 Score=52.35 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=53.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC-------CCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD-------TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 287 (633)
..+.|.|-+.|.. ....|.++|++||.|.+..-..... ......+-.|+|.++.+|.+||.. ||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4567999999987 5577899999999998775111100 011346889999999999999996 999998864
Q ss_pred -EEEEEec
Q 006726 288 -IAVDWAV 294 (633)
Q Consensus 288 -i~v~~~~ 294 (633)
+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 5577764
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.79 E-value=0.00078 Score=63.41 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=60.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCC--------CCCce----EEEEEecCHHHHHHHHHhcCCCCC
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT--------KRPKG----TGFLKFKTVEAATAAVSASKTTSG 492 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~--------~~~~g----~afV~f~~~e~A~~A~~~ln~~~~ 492 (633)
...||+.|||+...-..|+++|+.||.|-.|.+-....+ |.+++ -|.|+|.+...|.++...||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln---- 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN---- 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC----
Confidence 358999999999999999999999999999877655433 33333 27899999999999999999
Q ss_pred CCeEEcCeE
Q 006726 493 LGIFLKGRQ 501 (633)
Q Consensus 493 ~g~~l~gr~ 501 (633)
+..|+|++
T Consensus 150 -n~~Iggkk 157 (278)
T KOG3152|consen 150 -NTPIGGKK 157 (278)
T ss_pred -CCccCCCC
Confidence 89998864
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.77 E-value=0.00086 Score=63.12 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC--------CCce----eEEEEEecCHHHHHHHHHHhCCce
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT--------GLSK----GFAFVKFTCKRDAESAIQKFNGQK 282 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--------~~~~----g~afV~f~~~~~A~~A~~~l~g~~ 282 (633)
....||+++||+.+...-|+++|+.||.|-.|.+-....+ |.+. .-|+|+|.+-..|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4569999999999999999999999999999988654333 2222 237899999999999999999999
Q ss_pred eCCee
Q 006726 283 FGKRP 287 (633)
Q Consensus 283 ~~g~~ 287 (633)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 170
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.72 E-value=0.0012 Score=64.51 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCC--eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGL--VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
....++||+||-|.+|.+||.+.....|. +.++++..++.+|+++|||+|...+..+.++-++.|-.+.|.|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 34568999999999999999999988775 7778888899999999999999999999999999999999988766665
Q ss_pred Ee
Q 006726 292 WA 293 (633)
Q Consensus 292 ~~ 293 (633)
..
T Consensus 158 ~~ 159 (498)
T KOG4849|consen 158 SY 159 (498)
T ss_pred cc
Confidence 43
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.65 E-value=0.0086 Score=46.58 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=44.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 280 (633)
.+.+....+|. +|..|...||.++|++||.|. |.++-+. -|||.....+.|..|+..+.-
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34455566677 999999999999999999986 7776542 399999999999999998753
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.55 E-value=0.014 Score=48.02 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=51.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEe-ecC------CCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPV-LHQ------VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~-~d~------~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l 497 (633)
.+.|.|.+.|.. ....|.++|++||.|.+..-+ .+. .......+-.|.|+++.+|.+||. -| |..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~N-----G~i~ 78 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KN-----GTIF 78 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TT-----TEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hC-----CeEE
Confidence 467999999988 667889999999998875300 000 001235688999999999999995 57 9999
Q ss_pred cCeEE-EEEEcc
Q 006726 498 KGRQL-TVLKAL 508 (633)
Q Consensus 498 ~gr~l-~V~~a~ 508 (633)
.|..| -|.++.
T Consensus 79 ~g~~mvGV~~~~ 90 (100)
T PF05172_consen 79 SGSLMVGVKPCD 90 (100)
T ss_dssp TTCEEEEEEE-H
T ss_pred cCcEEEEEEEcH
Confidence 98654 466653
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.37 E-value=0.0032 Score=63.54 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=56.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeec---CCC--CCC--------ceEEEEEecCHHHHHHHHHhcC
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH---QVT--KRP--------KGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d---~~~--~~~--------~g~afV~f~~~e~A~~A~~~ln 488 (633)
.+++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.- +.+ +.+ +-+|+|+|...+.|.+|.+.||
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 4789999999999999999999999999999999866 322 222 4569999999999999999987
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.36 E-value=0.0014 Score=61.98 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=52.9
Q ss_pred HHHHHhhc-cCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 231 NEIKDMFS-PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 231 ~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
++|...|+ +||.|.+++|..+. .-.-.|-+||.|...++|++|++.|||..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 56666666 89999998776543 22356889999999999999999999999999999999874
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.23 E-value=0.0019 Score=61.03 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=53.2
Q ss_pred HHHHHHhh-hcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEcc
Q 006726 440 EEVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (633)
Q Consensus 440 ~~L~~~F~-~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~ 508 (633)
++|...|+ +||.|+.+.|..+.. -.-.|-++|.|...++|++|+..|| +.++.|++|+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~ln-----nRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLN-----NRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHc-----CccccCCcceeeecC
Confidence 56666666 899999986665543 3458899999999999999999999 999999999998864
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.17 E-value=0.011 Score=56.67 Aligned_cols=66 Identities=26% Similarity=0.240 Sum_probs=53.6
Q ss_pred HHHHHHhhccCCCeEEEEEcccCCCCCc-eeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 230 VNEIKDMFSPVGLVWNVYIPHNTDTGLS-KGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 230 ~~~l~~~F~~~G~i~~v~i~~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
++++.+-+++||.|..|.|...+..... .---||+|...++|.+|+-.|||+.|+|+.+..+|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678889999999999988765422211 12369999999999999999999999999999998753
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.12 E-value=0.017 Score=55.54 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=61.1
Q ss_pred cEEEecCC--CCCCC---HHHHHHHhhhcCceEEEEEeecCCCCCCc-eEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 426 NTIFICNL--PFDLD---NEEVKQRFSAFGEVVSFVPVLHQVTKRPK-GTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 426 ~~lfV~nL--p~~~t---e~~L~~~F~~~G~V~~v~i~~d~~~~~~~-g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
+.|.++|+ +-.++ ++++.+-+++||.|..|.|...+...... ---||+|...++|-+|+-.|| |.+|+|
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-----GRyFGG 356 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-----GRYFGG 356 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-----Cceecc
Confidence 34667776 33444 57889999999999999887765322222 236999999999999999999 999999
Q ss_pred eEEEEEEcc
Q 006726 500 RQLTVLKAL 508 (633)
Q Consensus 500 r~l~V~~a~ 508 (633)
|.+...+..
T Consensus 357 r~v~A~Fyn 365 (378)
T KOG1996|consen 357 RVVSACFYN 365 (378)
T ss_pred eeeeheecc
Confidence 999988854
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.05 E-value=0.0076 Score=60.98 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEccc---CCCC--C--------ceeEEEEEecCHHHHHHHHHHhCC
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN---TDTG--L--------SKGFAFVKFTCKRDAESAIQKFNG 280 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~--~--------~~g~afV~f~~~~~A~~A~~~l~g 280 (633)
.+.++|.+-|||.+-..+.|.++|+.+|.|..|+|+.. +.++ . .+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 57899999999999999999999999999999999765 2222 1 245799999999999999998765
Q ss_pred ceeCCeeEEEE
Q 006726 281 QKFGKRPIAVD 291 (633)
Q Consensus 281 ~~~~g~~i~v~ 291 (633)
..-+-.-++|.
T Consensus 309 e~~wr~glkvk 319 (484)
T KOG1855|consen 309 EQNWRMGLKVK 319 (484)
T ss_pred hhhhhhcchhh
Confidence 54433334443
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.91 E-value=0.012 Score=57.62 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=67.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcC--ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..++||+||-|-+|++||.+.....| .+.+++++.+..+|.++|||+|...+..+..+.++.|- ...|.|..-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP-----~k~iHGQ~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP-----TKTIHGQSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc-----cceecCCCC
Confidence 46899999999999999999987766 35666777888899999999999999999999999998 889999866
Q ss_pred EEEEcc
Q 006726 503 TVLKAL 508 (633)
Q Consensus 503 ~V~~a~ 508 (633)
.|....
T Consensus 155 ~V~~~N 160 (498)
T KOG4849|consen 155 TVLSYN 160 (498)
T ss_pred eeeccc
Confidence 665544
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.87 E-value=0.04 Score=48.27 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=52.6
Q ss_pred CCCCEEEEcCCCC------CCC---HHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 214 TQKWKLIIRNIPF------KAK---VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 214 ~~~~~l~v~nlp~------~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
++..||.|.=+.+ ... -.+|.+.|..||.+.-+++.-+ .-+|+|.+.+.|-+|+. |+|..++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 4455777765551 222 2478888999999887777653 37999999999999998 7999999
Q ss_pred CeeEEEEEecCC
Q 006726 285 KRPIAVDWAVPK 296 (633)
Q Consensus 285 g~~i~v~~~~~~ 296 (633)
|+.|.|..-.|.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999987654
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.46 E-value=0.069 Score=41.67 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=41.1
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
...+|. .|..+...||.++|++||.|.- ..+-| ..|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~V-sWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYV-SWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEE-EEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEE-EEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 466666 9999999999999999999863 34433 369999999999999998876
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.12 E-value=0.082 Score=46.33 Aligned_cols=56 Identities=32% Similarity=0.453 Sum_probs=44.9
Q ss_pred HHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccC
Q 006726 440 EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 440 ~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (633)
.+|.+.|..||.|.-+|++- +.-+|+|.+-++|.+|+ .++ |..++|+.|+|....+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaal-s~d-----g~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAAL-SLD-----GIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHH-HGC-----CSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHH-ccC-----CcEECCEEEEEEeCCc
Confidence 47888999999988877763 24699999999999999 677 9999999999988543
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.10 E-value=0.023 Score=59.87 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=64.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCee
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSP-VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRP 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 287 (633)
....+..|+|.||-..+|.-+|+.++.. .|.|... ++- + -+..|||.|.+.++|..-+.+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD-k----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD-K----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHH-H----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3455789999999999999999999995 5656665 332 2 345699999999999999999999988 6788
Q ss_pred EEEEEecCC
Q 006726 288 IAVDWAVPK 296 (633)
Q Consensus 288 i~v~~~~~~ 296 (633)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 999997544
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.90 E-value=0.1 Score=48.31 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=52.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc-CCCe---EEEE--EcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSP-VGLV---WNVY--IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--- 284 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i---~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 284 (633)
.....|.||+||++.|++++.+.++. ++.. ..+. ..........-.-|||.|.+.+++......++|..+-
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44569999999999999999998887 6665 2332 2111111113356999999999999999999998872
Q ss_pred C--eeEEEEEecC
Q 006726 285 K--RPIAVDWAVP 295 (633)
Q Consensus 285 g--~~i~v~~~~~ 295 (633)
| ....|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3566777743
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.75 E-value=0.17 Score=37.41 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=43.2
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhc----CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhc
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAF----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~----G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~l 487 (633)
..|+|+|+. +.+.++|+.+|..| + ...|..+-|. .|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 489999996 68899999999998 4 4456666553 4789999999999999875
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.66 E-value=0.12 Score=44.57 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=54.7
Q ss_pred CCCcEEEecCCCCCCC-HHH---HHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 423 ELQNTIFICNLPFDLD-NEE---VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~t-e~~---L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
++-.+|.|+=|...+. .+| +....+.||+|.+|.++ | +..|.|.|.+..+|-+|+.++. ...-
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~------s~~p 150 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQ------SRAP 150 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhc------CCCC
Confidence 3446888876655542 344 45556789999998654 3 5679999999999999999997 4667
Q ss_pred CeEEEEEEcc
Q 006726 499 GRQLTVLKAL 508 (633)
Q Consensus 499 gr~l~V~~a~ 508 (633)
|..+++.|-.
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 8888888843
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.99 E-value=0.22 Score=36.87 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=44.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccC----CCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (633)
...|+|+|+. +++.++|+.+|..| ++ ..|.++-|. -|=|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3479999985 68889999999998 54 467787653 2889999999999999764
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.81 E-value=0.091 Score=48.59 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=51.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhh-cCce---EEEEEeecC-CCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSA-FGEV---VSFVPVLHQ-VTK-RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~-~G~V---~~v~i~~d~-~~~-~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
+..|.||+||+..|++++.+.+++ ++.- .++.-.... ..+ ....-|||.|.+.+++..-...++ |+.|.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~-----g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD-----GHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT-----TEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC-----CcEEE
Confidence 579999999999999999997776 6655 344311221 112 234569999999999999999999 87775
Q ss_pred C-----eEEEEEEccC
Q 006726 499 G-----RQLTVLKALD 509 (633)
Q Consensus 499 g-----r~l~V~~a~~ 509 (633)
+ -+..|.+|.-
T Consensus 82 D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPY 97 (176)
T ss_dssp -TTS-EEEEEEEE-SS
T ss_pred CCCCCCcceeEEEcch
Confidence 3 3456666654
No 189
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.60 E-value=0.07 Score=56.44 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=64.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhh-hcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE--
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL-- 497 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l-- 497 (633)
....+..|||.||-.-+|.-.|+.++. ..|.|... + +|+ -+..|||.|.+.++|.....+|| |..+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mDk----IKShCyV~yss~eEA~atr~Alh-----nV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MDK----IKSHCYVSYSSVEEAAATREALH-----NVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-H-HHH----hhcceeEecccHHHHHHHHHHHh-----ccccCC
Confidence 455678999999999999999999998 45666665 2 332 36679999999999999999999 7765
Q ss_pred -cCeEEEEEEccCh
Q 006726 498 -KGRQLTVLKALDK 510 (633)
Q Consensus 498 -~gr~l~V~~a~~k 510 (633)
+++.|.+.|+..-
T Consensus 509 sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 509 SNPKHLIADFVRAD 522 (718)
T ss_pred CCCceeEeeecchh
Confidence 5788999997653
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.35 E-value=0.61 Score=40.37 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=56.2
Q ss_pred CCCCCCEEEEcCCCCCCC-HHH---HHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 006726 212 SKTQKWKLIIRNIPFKAK-VNE---IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t-~~~---l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 287 (633)
..++-.+|.|+=|..++. .+| +...++.||+|.+|...- +--|.|.|.+..+|=+|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 345667888887666553 334 455567799999987753 23599999999999999998765 667888
Q ss_pred EEEEEec
Q 006726 288 IAVDWAV 294 (633)
Q Consensus 288 i~v~~~~ 294 (633)
+++.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 9998864
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.33 E-value=0.067 Score=53.09 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEcccCC--CCC-ceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 006726 215 QKWKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTD--TGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~--~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 288 (633)
...-+||-+|+.....+.+. +.|.+||.|..|.+.++.. .+. ...-++|+|...++|..||...+|..+.|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34567888888776544443 4889999999998877652 111 11237999999999999999999999999998
Q ss_pred EEEEecCC
Q 006726 289 AVDWAVPK 296 (633)
Q Consensus 289 ~v~~~~~~ 296 (633)
+..+..++
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88887654
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.20 E-value=0.3 Score=45.37 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=46.2
Q ss_pred CHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeeEEEEEecCC
Q 006726 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 229 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~~~~~ 296 (633)
....|+++|..|+.+.....++ +-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3578999999999988777765 33458999999999999999999 99999999999998543
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.16 E-value=0.49 Score=46.14 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee-EEEEEec
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-IAVDWAV 294 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~~~ 294 (633)
..-|.|-++|+... .-|..+|++||.|.+..... +..|-+|.|.+.-+|++||.. ||+.|+|.. |-|....
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 56788889987654 56888999999998665442 446899999999999999996 999998764 5566654
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
.+.
T Consensus 269 Dks 271 (350)
T KOG4285|consen 269 DKS 271 (350)
T ss_pred CHH
Confidence 443
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.13 E-value=0.045 Score=54.26 Aligned_cols=82 Identities=21% Similarity=0.381 Sum_probs=63.8
Q ss_pred cEEEecCCCCCCCHHHHH---HHhhhcCceEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 426 NTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQV---TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~---~~F~~~G~V~~v~i~~d~~---~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
.-+||-+|+.....+.+. +.|.+||.|..|.+-.+.. ......-++|+|...++|.+||...+ |..++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-----g~~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-----GFVDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-----hHHhhh
Confidence 467888888887655553 6899999999987666542 11123348999999999999999999 999999
Q ss_pred eEEEEEEccChhh
Q 006726 500 RQLTVLKALDKKL 512 (633)
Q Consensus 500 r~l~V~~a~~k~~ 512 (633)
+.|+..++..+-.
T Consensus 153 ~~lka~~gttkyc 165 (327)
T KOG2068|consen 153 RALKASLGTTKYC 165 (327)
T ss_pred hhhHHhhCCCcch
Confidence 9998888877654
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.53 E-value=1.8 Score=36.46 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=47.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 218 KLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 218 ~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
.+.+-..|.-++-++|..+.+.+- .|..++|+++. ..++-.+++.|.+.++|..-...+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 444444455555666766666553 47788888863 236667899999999999999999999884
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.06 E-value=0.98 Score=47.77 Aligned_cols=92 Identities=18% Similarity=0.316 Sum_probs=65.8
Q ss_pred HHHHHHhCCCeecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcc--CCCeEEEEEcccCCCCCceeEEEE
Q 006726 186 CASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGFAFV 263 (633)
Q Consensus 186 ~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV 263 (633)
..+|+...+..+..+-..|+ .....|.|+++-||..+-.++++.+|.. +-.+++|.+-.+. + =||
T Consensus 151 ~Evlresp~VqvDekgekVr------p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyI 217 (684)
T KOG2591|consen 151 VEVLRESPNVQVDEKGEKVR------PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYI 217 (684)
T ss_pred HHHHhcCCCceeccCccccc------cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEE
Confidence 33444445555555555555 3345678899999999999999999986 6678888876542 2 499
Q ss_pred EecCHHHHHHHHHHhCCc--eeCCeeEEE
Q 006726 264 KFTCKRDAESAIQKFNGQ--KFGKRPIAV 290 (633)
Q Consensus 264 ~f~~~~~A~~A~~~l~g~--~~~g~~i~v 290 (633)
+|.+..||+.|.+.|.-. .|.|++|..
T Consensus 218 Tfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 218 TFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred EeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 999999999999876432 355655543
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.87 E-value=2.2 Score=35.90 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=48.1
Q ss_pred EEEecCCCCCCCHHHHHHHhhhc-CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 427 TIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 427 ~lfV~nLp~~~te~~L~~~F~~~-G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
.+.+-..|+-++.++|..+.+.+ ..|..++|++|. ..++-.+.++|.+.++|..-....| |+.|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fN-----Gk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFN-----GKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhC-----CCccC
Confidence 34444445555667777666665 357788888874 3467789999999999999999999 77665
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.57 E-value=1.5 Score=33.10 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 436 DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 436 ~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++-++++..+..|+-. . |..|+ +|| ||.|.+..+|+++....+ |..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~-----~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDR-----TGF-YIVFNDSKEAERCFRAED-----GTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecC-----CEE-EEEECChHHHHHHHHhcC-----CCEEEEEEEEe
Confidence 57789999999999643 3 34443 566 899999999999999999 88888877654
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.08 E-value=1.2 Score=33.66 Aligned_cols=55 Identities=16% Similarity=0.316 Sum_probs=43.8
Q ss_pred CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 227 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.++-++++..+..|+-.. | ..+ ..|| ||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I--~~d-----~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-I--RDD-----RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-E--Eec-----CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567899999999998532 3 333 2354 99999999999999999999988877765
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.90 E-value=0.23 Score=51.33 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=60.1
Q ss_pred CCEEEEcCCCCCC-CHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 216 KWKLIIRNIPFKA-KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 216 ~~~l~v~nlp~~~-t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
.+.|-+.-.|+.. +.++|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3455555566654 57899999999999999987542 2349999999999977776 59999999999999998
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 754
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.49 E-value=0.33 Score=50.24 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=59.7
Q ss_pred CCcEEEecCCCCCC-CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 424 LQNTIFICNLPFDL-DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 424 ~~~~lfV~nLp~~~-te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..+.|-+.-.|+.. |..+|..+|.+||.|..|.+- .+.--|.|+|.+..+|-.|. ... +..|+||.|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~------~~~~~a~vTF~t~aeag~a~-~s~-----~avlnnr~i 438 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVD------YSSLHAVVTFKTRAEAGEAY-ASH-----GAVLNNRFI 438 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCcccccccc------Cchhhheeeeeccccccchh-ccc-----cceecCcee
Confidence 34566666677775 689999999999999998552 22446899999999997776 345 899999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
+|.|..+.
T Consensus 439 Kl~whnps 446 (526)
T KOG2135|consen 439 KLFWHNPS 446 (526)
T ss_pred EEEEecCC
Confidence 99998774
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.77 E-value=1.7 Score=46.01 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=53.2
Q ss_pred ceEEEcCCCccccHHHHHHHHhc--cCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhC--CCee
Q 006726 122 RTVIIGGLLNADMAEEVHRLAGS--IGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH--QKEI 197 (633)
Q Consensus 122 ~tl~V~nlp~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--~~~~ 197 (633)
+-|+++-||..+-.++++.+|+. |-.+.+|.+-.+.. =||+|++..||+.|...|. -+.|
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----------------WyITfesd~DAQqAykylreevk~f 239 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----------------WYITFESDTDAQQAYKYLREEVKTF 239 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----------------eEEEeecchhHHHHHHHHHHHHHhh
Confidence 44778999999999999999994 66788888643221 4999999999999998874 3567
Q ss_pred cCeEEEEc
Q 006726 198 KGGTVWAR 205 (633)
Q Consensus 198 ~g~~i~v~ 205 (633)
.|++|.+|
T Consensus 240 qgKpImAR 247 (684)
T KOG2591|consen 240 QGKPIMAR 247 (684)
T ss_pred cCcchhhh
Confidence 77777554
No 203
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.59 E-value=0.82 Score=49.55 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
.++..++||+|+.+.+..+-++.+...+|.|.+++... |||..|..+..+.+|+..++ -..++|..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t-----~~~~~~~k 102 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLT-----ELNIDDQK 102 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhc-----ccCCCcch
Confidence 44467999999999999999999999999998875432 99999999999999999998 78888888
Q ss_pred EEEEE
Q 006726 502 LTVLK 506 (633)
Q Consensus 502 l~V~~ 506 (633)
|.+..
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 87755
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.99 E-value=2.4 Score=41.56 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=56.2
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe-EEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR-QLTV 504 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr-~l~V 504 (633)
.=|-|.++|+... .-|..+|++||.|... + ++..-.+-+|.|.+.-+|++||.. | |..|+|. .|-|
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkh-v-----~~~ngNwMhirYssr~~A~KALsk-n-----g~ii~g~vmiGV 264 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKH-V-----TPSNGNWMHIRYSSRTHAQKALSK-N-----GTIIDGDVMIGV 264 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeee-e-----cCCCCceEEEEecchhHHHHhhhh-c-----CeeeccceEEee
Confidence 4677888887654 4577899999999875 2 233456899999999999999955 5 8888876 4567
Q ss_pred EEccChhh
Q 006726 505 LKALDKKL 512 (633)
Q Consensus 505 ~~a~~k~~ 512 (633)
..+.+|..
T Consensus 265 kpCtDksv 272 (350)
T KOG4285|consen 265 KPCTDKSV 272 (350)
T ss_pred eecCCHHH
Confidence 77776654
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.27 E-value=0.78 Score=50.97 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=65.6
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--CCeeEEEEEecCC
Q 006726 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPK 296 (633)
Q Consensus 219 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~~~~~ 296 (633)
.++-|.+-..+..-|..+|+.||.|.++...++- ..|.|.|.+.+.|..|+.+|+|..+ .|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445556677888999999999999998887753 3599999999999999999999976 6888999999888
Q ss_pred CcccCC
Q 006726 297 NIYSSG 302 (633)
Q Consensus 297 ~~~~~~ 302 (633)
..+.+.
T Consensus 375 ~~~ep~ 380 (1007)
T KOG4574|consen 375 PMYEPP 380 (1007)
T ss_pred ccccCC
Confidence 777665
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.64 E-value=4 Score=37.97 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=43.7
Q ss_pred CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccC
Q 006726 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 438 te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (633)
....|+++|..|+.+..+.++.. -+-..|.|.+.++|.+|...++.. +..+.|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~---~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWD---GTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST-----TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccc---ccccCCCceEEEEccc
Confidence 34789999999999888755533 345789999999999999997611 5789999999999854
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.43 E-value=4.6 Score=41.92 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=57.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcC-ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
++.|+|-.+|..+|-.||..|+..|- .|.++++++|. -.++-.+.|.|.+.++|..-...+| |..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efN-----Gk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFN-----GKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcC-----CCcCC
Confidence 68999999999999999999998664 58889999964 2346678999999999999999999 77765
No 208
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.31 E-value=2.3 Score=34.10 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=43.6
Q ss_pred EEEEeCCHHHHHHHHHHhC-CCeecCeEEEEccCC--C-------CCCCCCCCEEEEcCCCCCCCHHHHHHhhc
Q 006726 175 SAVLYTTVKSACASVALLH-QKEIKGGTVWARQLG--G-------EGSKTQKWKLIIRNIPFKAKVNEIKDMFS 238 (633)
Q Consensus 175 afV~F~~~~~A~~A~~~l~-~~~~~g~~i~v~~~~--~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 238 (633)
|+|+|..+.-|++-+..-. .-.+.+..+.|+... . -......++|.|.|||....+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999886432 233444444443211 1 01345678999999999999999998654
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.02 E-value=5.9 Score=41.16 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=57.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
.+.|+|=.+|..++..||-.|+..+- .|..++|+++.. .++=..+|.|.+.++|....+.+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78999999999999999999998764 488999999632 24455899999999999999999999884
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.00 E-value=1.2 Score=48.39 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=61.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
...+..++||+|+...+..+-+..+...+|.|.++.... |||+.|..+.-+.+|+..++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345667999999999999999999999999987665432 89999999999999999999999988887765
Q ss_pred E
Q 006726 292 W 292 (633)
Q Consensus 292 ~ 292 (633)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=80.00 E-value=3.1 Score=33.40 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=24.3
Q ss_pred EEEEeccHHHHHHHHHHh-CCceeCCeEEEEeec
Q 006726 14 GYVQFAVMEDANRAVEMK-NGTSVGGRKIGVKHA 46 (633)
Q Consensus 14 afV~F~~~edA~~Al~~l-~g~~i~gr~i~V~~a 46 (633)
|.|+|..++=|++-++.- +-..+.+..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 789999999999998873 334556667666554
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=77.04 E-value=11 Score=29.14 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCCHHHHHHhhccCCC-----eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 227 KAKVNEIKDMFSPVGL-----VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 227 ~~t~~~l~~~F~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
.++..+|..++...+. |-.|.|.. .|+||+-... .|..++..|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5677888888877543 55666654 3688887654 788999999999999999999864
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.41 E-value=3.7 Score=31.85 Aligned_cols=34 Identities=32% Similarity=0.596 Sum_probs=20.4
Q ss_pred cEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeec
Q 006726 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46 (633)
Q Consensus 12 G~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a 46 (633)
-|+||+-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 41 ~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 378887655 4899999999999999999999875
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=75.35 E-value=1.8 Score=48.19 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=62.4
Q ss_pred EEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE--EcCeEEEE
Q 006726 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF--LKGRQLTV 504 (633)
Q Consensus 427 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~--l~gr~l~V 504 (633)
..++-|.+-..+..-|..+|++||.|.++...++ -..|.|.|.+.+.|..|+.+++ |+. .-|-+.+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~-----gkevs~~g~Ps~V 368 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQ-----GKEVSVTGAPSRV 368 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhc-----CCcccccCCceeE
Confidence 5566677788899999999999999999876665 4479999999999999999999 655 45788999
Q ss_pred EEccChhh
Q 006726 505 LKALDKKL 512 (633)
Q Consensus 505 ~~a~~k~~ 512 (633)
.+|+.-+-
T Consensus 369 ~~ak~~~~ 376 (1007)
T KOG4574|consen 369 SFAKTLPM 376 (1007)
T ss_pred Eecccccc
Confidence 99887543
No 215
>PHA01632 hypothetical protein
Probab=67.05 E-value=8.9 Score=27.20 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=31.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhhcccCcceeeeeeecc
Q 006726 580 LVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQVCYLFS 621 (633)
Q Consensus 580 l~i~NlP~~~te~~l~~~f~~~~~~~~~~~~~~~~~v~~~~~ 621 (633)
|.|..+|..-|+++||..+.+.+.+++.-... +-++++..
T Consensus 19 ilieqvp~kpteeelrkvlpkilkdyanmie~--gk~ki~ds 58 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPKILKDYANMIEN--GKIKILDS 58 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEecc
Confidence 44568999999999999999988888776555 44566654
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.26 E-value=7.8 Score=35.26 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=54.8
Q ss_pred CEEEEcCCCCCCC-----HHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe-eEEE
Q 006726 217 WKLIIRNIPFKAK-----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PIAV 290 (633)
Q Consensus 217 ~~l~v~nlp~~~t-----~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v 290 (633)
+++++.+++..+- ......+|.+|-+..-..+++ +.+.--|.|.+++.|..|...+++..+.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4677777776442 334556676666655445554 556678999999999999999999999888 8888
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8886643
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.48 E-value=53 Score=35.59 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=65.8
Q ss_pred cccCceEEEcCCCcc-ccHHHHHHHHhcc----CCeEEEEeeCCchh---hhh---ccc---------------------
Q 006726 118 QRVARTVIIGGLLNA-DMAEEVHRLAGSI----GTVCSVTYPLPKEE---LEQ---HGL--------------------- 165 (633)
Q Consensus 118 ~~~~~tl~V~nlp~~-~t~~~l~~~f~~~----G~i~~~~~~~~~~~---~~~---~~~--------------------- 165 (633)
....+.|-|-|+.++ +..++|.-+|+.| |.|.+|.|...... +.. +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 355678999999996 5689999999977 58999987543211 000 010
Q ss_pred ----------cCCCC-CcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCC
Q 006726 166 ----------AQEGC-KMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAK 229 (633)
Q Consensus 166 ----------~~~g~-~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t 229 (633)
..-++ .-.||.|+|.+.+.|......++|..+... ...|=++-||.+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS---------------~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS---------------ANKLDLRFIPDDMT 310 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc---------------cceeeeeecCCCCc
Confidence 00011 125799999999999999999999877633 23444666777666
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.60 E-value=41 Score=36.40 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHhhhc----CceEEEEEeecCC----------CCC---------------------
Q 006726 422 DELQNTIFICNLPFD-LDNEEVKQRFSAF----GEVVSFVPVLHQV----------TKR--------------------- 465 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~V~~v~i~~d~~----------~~~--------------------- 465 (633)
....++|=|.||.|+ +..+||.-+|+.| |.|.+|.|....- .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445789999999997 6899999999865 5888887753220 111
Q ss_pred ----------------CceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc--CeEEEEEEc
Q 006726 466 ----------------PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK--GRQLTVLKA 507 (633)
Q Consensus 466 ----------------~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~--gr~l~V~~a 507 (633)
.--||.|+|.+.+.|.+....+. |+.|. |..|-+.+-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CD-----G~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECD-----GIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcC-----cceeccccceeeeeec
Confidence 12469999999999999999999 88886 445555543
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.68 E-value=15 Score=35.43 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=29.0
Q ss_pred CcEEEecCCCCCC------------CHHHHHHHhhhcCceEEEEEeec
Q 006726 425 QNTIFICNLPFDL------------DNEEVKQRFSAFGEVVSFVPVLH 460 (633)
Q Consensus 425 ~~~lfV~nLp~~~------------te~~L~~~F~~~G~V~~v~i~~d 460 (633)
.-|||+-+||-.| +++.|+..|+.||.|..|.|+..
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 3588888887433 57899999999999999887653
No 220
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=52.12 E-value=19 Score=32.09 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=27.0
Q ss_pred cEEEecCCCCC-CCHHHHHHHhhhcCceEEEEE
Q 006726 426 NTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVP 457 (633)
Q Consensus 426 ~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i 457 (633)
.=|.|.|||.. .+++-|+.+-+.+|.+..+..
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 46889999988 578889999999999988743
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=51.88 E-value=17 Score=31.00 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=30.9
Q ss_pred cEEEecCCCCCC---------CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHH
Q 006726 426 NTIFICNLPFDL---------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAAT 481 (633)
Q Consensus 426 ~~lfV~nLp~~~---------te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~ 481 (633)
-++.|-|+|.+. +.++|++.|+.|..++ ++.+.+. ..++|++.|.|...-..-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHH
Confidence 377788886543 5689999999999886 5566664 356899999998755443
No 222
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=48.32 E-value=23 Score=31.56 Aligned_cols=77 Identities=9% Similarity=-0.015 Sum_probs=53.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCCCC------CCCCCEEEEcCCCCC-CCHHHHHHhhccCCCeE
Q 006726 172 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS------KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVW 244 (633)
Q Consensus 172 ~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~------~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~ 244 (633)
.++..+.|.+.+++..++. .....+.+..+.+..-.+... .....-|.|.|||.. ++++-|+.+-+.+|.+.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 4678999999999999876 233445555555543322111 112334677899987 68889999999999998
Q ss_pred EEEEc
Q 006726 245 NVYIP 249 (633)
Q Consensus 245 ~v~i~ 249 (633)
.+...
T Consensus 134 ~vD~~ 138 (153)
T PF14111_consen 134 EVDEN 138 (153)
T ss_pred EEEcC
Confidence 87654
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.30 E-value=14 Score=33.60 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=53.8
Q ss_pred CcEEEecCCCCCCC-----HHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 425 QNTIFICNLPFDLD-----NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 425 ~~~lfV~nLp~~~t-----e~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
.+++.+.+++..+- .....++|.+|.......+++ +.++.-|.|.+++.|..|...++ +..|.|
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~-----~~~f~~ 78 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLH-----STSFNG 78 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhh-----hcccCC
Confidence 46788888887652 233455666666554443332 34556789999999999999999 889988
Q ss_pred e-EEEEEEccCh
Q 006726 500 R-QLTVLKALDK 510 (633)
Q Consensus 500 r-~l~V~~a~~k 510 (633)
. .++.-+|.+-
T Consensus 79 ~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 79 KNELKLYFAQPG 90 (193)
T ss_pred CceEEEEEccCC
Confidence 8 8888888764
No 224
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=43.47 E-value=37 Score=28.37 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHHhhcc---CCCeEEEEEcccCCCCCceeEEEEEecCH
Q 006726 224 IPFKAKVNEIKDMFSP---VGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (633)
Q Consensus 224 lp~~~t~~~l~~~F~~---~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 268 (633)
-|+.+|..+|+++|+. |-.|.+-.+.++.--.-+-..||.-|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 3568899999999986 55555545555422122445678877654
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=43.05 E-value=76 Score=31.09 Aligned_cols=48 Identities=4% Similarity=0.029 Sum_probs=36.2
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCC-eEEEEeeCCchhhhhccccCCCCCcceEEEEeCCH
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGT-VCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTV 182 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~ 182 (633)
...-|+++|||.++--.||+..+.+.|. ..++.. .-+.|-||++|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw---------------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW---------------KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee---------------ecCCcceeEecCCc
Confidence 3456999999999999999999998874 334442 23456799999764
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.59 E-value=70 Score=32.94 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=46.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceE-EEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV-SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~-~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ 486 (633)
+......|-|+|+|.....+||...|+.|+.-- .|++|-| -.||-.|.+...|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 344567999999999999999999999997633 2333333 3689999999999999865
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=42.00 E-value=45 Score=32.99 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=59.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecC-------CCCCCceEEEEEecCHHHHHH----HHHhcCCCCCC
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-------VTKRPKGTGFLKFKTVEAATA----AVSASKTTSGL 493 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~-------~~~~~~g~afV~f~~~e~A~~----A~~~ln~~~~~ 493 (633)
.+.|...|+..+++-..+...|-+||+|++|.++.+. +.........+.|-+.+.+.. .++.|++-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf--- 91 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF--- 91 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH---
Confidence 5789999999999999999999999999999988765 122345677899999887754 22223210
Q ss_pred CeEEcCeEEEEEEcc
Q 006726 494 GIFLKGRQLTVLKAL 508 (633)
Q Consensus 494 g~~l~gr~l~V~~a~ 508 (633)
...+.-..|.|.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 245666777777754
No 228
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.27 E-value=55 Score=24.89 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=46.1
Q ss_pred HHHHHHhhhcC-ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccCh
Q 006726 440 EEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (633)
Q Consensus 440 ~~L~~~F~~~G-~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (633)
++|.+-|...| .|..+.-+....++.+...-||+.....+... .++ =..++|..+.|.+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~-----Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYK-----IKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eee-----hHhhCCeEEEEecCCCC
Confidence 56788888777 47777777777677788888999888766333 333 35788999999886543
No 229
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.86 E-value=24 Score=34.17 Aligned_cols=76 Identities=13% Similarity=0.228 Sum_probs=45.6
Q ss_pred CceEEEcCCCcc------------ccHHHHHHHHhccCCeEEEEeeCCchhh-----hhccccCCCCCcc-----eEEEE
Q 006726 121 ARTVIIGGLLNA------------DMAEEVHRLAGSIGTVCSVTYPLPKEEL-----EQHGLAQEGCKMD-----ASAVL 178 (633)
Q Consensus 121 ~~tl~V~nlp~~------------~t~~~l~~~f~~~G~i~~~~~~~~~~~~-----~~~~~~~~g~~~g-----~afV~ 178 (633)
..||++.+||-. -+++.|+..|..||.|..|.+|+-...- ...|+...|-+-| -|||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357888888743 2467799999999999999988643311 1122222222211 14566
Q ss_pred eCCHHHHHHHHHHhCCCe
Q 006726 179 YTTVKSACASVALLHQKE 196 (633)
Q Consensus 179 F~~~~~A~~A~~~l~~~~ 196 (633)
|....--..|+..|.|..
T Consensus 229 fmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHhHHHHHHHHhcch
Confidence 655555566666666643
No 230
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=37.06 E-value=60 Score=24.68 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=45.2
Q ss_pred HHHHHHhhhcC-ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccC
Q 006726 440 EEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 440 ~~L~~~F~~~G-~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (633)
++|.+-|..+| .+..++-|....++.+-..-||+.....+-.. -++ =..|+|+++.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~-----ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILN-----IKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEe-----ehhhCCeeEEEecCcc
Confidence 46788888888 48888888887777777788888876644333 333 3578899999987653
No 231
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.44 E-value=5.7 Score=41.01 Aligned_cols=78 Identities=6% Similarity=-0.174 Sum_probs=62.6
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
...|+..+|...+++++.-+|..||.|..+..-+....|...-.+||.-.+ .+|..++..+. -..+.|..++|.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k-----~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQK-----RQTTFESQDRKA 77 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHH-----Hhhhhhhhhhhh
Confidence 567889999999999999999999999998777666667777788988655 56777777776 667778888886
Q ss_pred EccC
Q 006726 506 KALD 509 (633)
Q Consensus 506 ~a~~ 509 (633)
.+..
T Consensus 78 ~~~~ 81 (572)
T KOG4365|consen 78 VSPS 81 (572)
T ss_pred cCch
Confidence 6654
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.12 E-value=81 Score=23.41 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.0
Q ss_pred HHHHHHhhhcCceEEEEE
Q 006726 440 EEVKQRFSAFGEVVSFVP 457 (633)
Q Consensus 440 ~~L~~~F~~~G~V~~v~i 457 (633)
.+||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999986533
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.99 E-value=36 Score=29.02 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=29.9
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHH-HHHHHH
Q 006726 218 KLIIRNIPFK---------AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD-AESAIQ 276 (633)
Q Consensus 218 ~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~A~~ 276 (633)
++.|-|+|.. .+.+.|.+.|+.|.++. ++.+.+. . -+.|+++|.|.+.-. -..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-Q-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-T-EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-C-CCcEEEEEEECCChHHHHHHHH
Confidence 5667777543 35688999999999875 5555543 2 378999999986543 344443
No 234
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.46 E-value=63 Score=33.29 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=46.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (633)
-.+.|-|.++|.....+||...|+.|+. -..|.++-+ -.||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 3468999999999999999999999975 345666654 3599999999999999974
No 235
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=32.22 E-value=73 Score=31.57 Aligned_cols=83 Identities=11% Similarity=0.239 Sum_probs=60.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC-------CCCceeEEEEEecCHHHHHHHH----HHhCC
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD-------TGLSKGFAFVKFTCKRDAESAI----QKFNG 280 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~----~~l~g 280 (633)
+.-..+.|...|+..+++--.+...|-+||+|++|.++.+.. .........+.|-+.+.+-... +.|+-
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999987641 1123456889999988765433 22322
Q ss_pred --ceeCCeeEEEEEec
Q 006726 281 --QKFGKRPIAVDWAV 294 (633)
Q Consensus 281 --~~~~g~~i~v~~~~ 294 (633)
..+....|.|.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 23566778888764
No 236
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.10 E-value=77 Score=32.44 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=23.7
Q ss_pred EEEEeccHHHHHHHHHHhCCceeCCeEEEEeec
Q 006726 14 GYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46 (633)
Q Consensus 14 afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a 46 (633)
|||+|.+..+|..|++.+... .++.++|..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeC
Confidence 799999999999999975432 2455577666
No 237
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.69 E-value=1.4e+02 Score=23.87 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=40.0
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CCC-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 006726 219 LIIRNIPFKAKVNEIKDMFSP-VGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 219 l~v~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (633)
-|+--.+..++..++++.++. ||. |.+|.....+. ..-=|||.+...+.|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 344445678999999999987 675 77777665431 223499999999888877554
No 238
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.31 E-value=9.3 Score=40.79 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=52.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 285 (633)
..++||++|++++.+-++|..++..+-.+..+-+...........+++|+|+-.-.-..|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45789999999999999999999998766666554332222345668899987766677777777766543
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.50 E-value=1.7e+02 Score=22.88 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=39.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CCC-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 006726 219 LIIRNIPFKAKVNEIKDMFSP-VGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 219 l~v~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (633)
-|+-..+..++..+|+..++. ||. |.+|....-+. ..-=|||.+...+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 455556788999999999987 665 77776655432 223499999988888776543
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=24.74 E-value=11 Score=40.37 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=47.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
.|+||++|+++.++-.+|..+++.+--+..+-+-.........-++.|.|+---.-.-|+.+||
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 5899999999999999999999988666655333222223345567899987777777777777
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.59 E-value=87 Score=30.73 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=36.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHH
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKR 269 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 269 (633)
.+-|+++|||.++.-.||+..+.+.|.+- ..|... | +.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---G-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeee---c-CCcceeEecCCcc
Confidence 46799999999999999999999877532 222221 2 5677999997653
No 242
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.44 E-value=17 Score=37.74 Aligned_cols=78 Identities=8% Similarity=-0.098 Sum_probs=60.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
+..++..+|...++.++.-+|..||.|..+.+.+....|...-.+||+-.. .+|..+|+.+....+.|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999888776655556666778887654 456777777777777788888777643
No 243
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.13 E-value=1.4e+02 Score=22.17 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.2
Q ss_pred HHHHHhhccCCCeEEEEE
Q 006726 231 NEIKDMFSPVGLVWNVYI 248 (633)
Q Consensus 231 ~~l~~~F~~~G~i~~v~i 248 (633)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999875555
No 244
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=22.29 E-value=1e+02 Score=31.80 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=48.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEcccCCCC---CceeEEEEEecCHHHHHHHHHHhCCcee
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDTG---LSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~ 283 (633)
....|.|++||+..++.+|.+...++-. +....+... ..+ .-.+.|||.|..+++...-...++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a-~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKA-DESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccc-cccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4467899999999999999998887643 222222211 111 1256799999999998887777787765
No 245
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.34 E-value=42 Score=34.67 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=50.1
Q ss_pred CcEEEecCCCCCCCHH--------HHHHHhhh--cCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 425 QNTIFICNLPFDLDNE--------EVKQRFSA--FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~--------~L~~~F~~--~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
.+.+|+.+.+...+.+ ++...|.. .+++..++.-++.....++|..|++|.....|++.+...+
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~~~ 247 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNGFY 247 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcccc
Confidence 3577888887666544 99999998 6777777766666567789999999999999999885433
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.15 E-value=81 Score=32.24 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=26.8
Q ss_pred EEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 470 GFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 470 afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
|||.|++..+|..|++.+. ...++.+.+..|.+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~-------~~~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-------SKRPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-------cCCCCCceEeeCCCcc
Confidence 7999999999999998765 3334666887776543
Done!