Query 006726
Match_columns 633
No_of_seqs 497 out of 4201
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 07:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1E-43 3.5E-48 359.4 31.6 247 119-513 20-267 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.7E-43 5.8E-48 359.3 27.6 252 117-510 37-291 (292)
3 3smz_A Protein raver-1, ribonu 100.0 1.2E-35 4.1E-40 300.2 26.6 210 8-299 54-267 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 2.8E-35 9.5E-40 298.7 24.1 202 10-296 80-291 (292)
5 4f02_A Polyadenylate-binding p 100.0 2.4E-33 8.1E-38 270.3 20.7 173 213-513 12-184 (213)
6 1l3k_A Heterogeneous nuclear r 100.0 3.3E-32 1.1E-36 259.1 21.8 179 212-514 9-187 (196)
7 1b7f_A Protein (SXL-lethal pro 100.0 3E-32 1E-36 252.6 20.4 165 215-507 2-168 (168)
8 3md3_A Nuclear and cytoplasmic 100.0 5.6E-32 1.9E-36 250.1 21.8 165 217-508 1-165 (166)
9 1fxl_A Paraneoplastic encephal 100.0 6.1E-32 2.1E-36 250.1 21.2 164 216-507 2-167 (167)
10 2cjk_A Nuclear polyadenylated 100.0 2.3E-32 8E-37 253.1 13.1 165 215-510 2-166 (167)
11 2qfj_A FBP-interacting repress 100.0 3.7E-31 1.3E-35 255.9 19.0 180 215-511 27-206 (216)
12 3md3_A Nuclear and cytoplasmic 100.0 1.2E-30 4.1E-35 241.2 21.5 163 122-294 1-165 (166)
13 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-30 5.1E-35 241.1 20.8 165 120-293 2-168 (168)
14 4f02_A Polyadenylate-binding p 100.0 1.2E-30 4.2E-35 251.3 19.2 167 120-297 14-182 (213)
15 1fxl_A Paraneoplastic encephal 100.0 2.8E-30 9.5E-35 238.9 20.9 164 121-293 2-167 (167)
16 3nmr_A Cugbp ELAV-like family 100.0 1.8E-30 6E-35 242.3 19.2 166 215-508 2-175 (175)
17 2cjk_A Nuclear polyadenylated 100.0 7.4E-31 2.5E-35 243.0 13.6 165 120-296 2-166 (167)
18 2g4b_A Splicing factor U2AF 65 100.0 7.1E-30 2.4E-34 237.6 18.7 158 215-507 3-171 (172)
19 1l3k_A Heterogeneous nuclear r 100.0 1.3E-29 4.4E-34 241.1 20.8 171 119-300 11-187 (196)
20 2qfj_A FBP-interacting repress 100.0 1.7E-29 5.9E-34 244.2 21.2 171 119-298 26-207 (216)
21 2yh0_A Splicing factor U2AF 65 100.0 2.5E-29 8.7E-34 239.5 21.5 182 215-511 3-195 (198)
22 2g4b_A Splicing factor U2AF 65 100.0 2.1E-29 7.3E-34 234.3 19.9 159 119-293 2-171 (172)
23 1fje_B Nucleolin RBD12, protei 100.0 2E-30 7E-35 242.0 12.9 166 212-510 9-174 (175)
24 3tyt_A Heterogeneous nuclear r 100.0 2.7E-29 9.1E-34 239.3 19.4 196 214-507 2-204 (205)
25 3nmr_A Cugbp ELAV-like family 100.0 6.5E-29 2.2E-33 231.6 17.9 167 120-294 2-175 (175)
26 3pgw_A U1-A; protein-RNA compl 100.0 1.5E-27 5.2E-32 240.4 26.6 269 212-508 5-281 (282)
27 2yh0_A Splicing factor U2AF 65 100.0 3.8E-28 1.3E-32 231.4 20.1 163 119-297 2-195 (198)
28 2adc_A Polypyrimidine tract-bi 100.0 3.6E-28 1.2E-32 236.8 20.0 196 212-510 30-228 (229)
29 1qm9_A Polypyrimidine tract-bi 100.0 3E-28 1E-32 232.1 17.0 193 215-510 2-197 (198)
30 3sde_A Paraspeckle component 1 100.0 5.7E-28 2E-32 240.2 19.3 161 212-512 18-181 (261)
31 1fje_B Nucleolin RBD12, protei 100.0 2.1E-28 7E-33 228.4 14.1 163 118-296 10-174 (175)
32 3tyt_A Heterogeneous nuclear r 100.0 2E-27 6.9E-32 226.3 18.9 158 120-293 3-204 (205)
33 2adc_A Polypyrimidine tract-bi 99.9 1.8E-26 6.1E-31 224.8 19.9 159 119-296 32-228 (229)
34 3pgw_A U1-A; protein-RNA compl 99.9 2.3E-26 7.9E-31 231.8 21.1 159 119-294 7-281 (282)
35 1qm9_A Polypyrimidine tract-bi 99.9 1E-26 3.5E-31 221.5 15.8 158 120-296 2-197 (198)
36 3sde_A Paraspeckle component 1 99.9 2.8E-26 9.7E-31 228.0 18.8 157 119-297 20-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 1E-21 3.4E-26 179.5 14.6 82 425-511 70-151 (158)
38 4f25_A Polyadenylate-binding p 99.9 9.6E-22 3.3E-26 169.0 10.4 80 425-511 5-84 (115)
39 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-20 3.9E-25 172.5 14.6 129 169-297 10-151 (158)
40 4f25_A Polyadenylate-binding p 99.8 1E-20 3.5E-25 162.5 10.9 81 215-297 4-84 (115)
41 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-20 6.1E-25 156.0 11.4 81 424-509 18-98 (99)
42 2i2y_A Fusion protein consists 99.8 1.1E-20 3.8E-25 170.8 10.1 77 424-510 72-148 (150)
43 2i2y_A Fusion protein consists 99.8 6.2E-20 2.1E-24 165.9 11.1 123 169-297 10-149 (150)
44 4fxv_A ELAV-like protein 1; RN 99.8 1.6E-19 5.4E-24 150.3 11.5 83 213-295 16-98 (99)
45 2lxi_A RNA-binding protein 10; 99.8 5.5E-20 1.9E-24 150.6 6.9 83 426-512 2-85 (91)
46 3s8s_A Histone-lysine N-methyl 99.8 4.9E-19 1.7E-23 150.2 12.1 84 424-512 5-88 (110)
47 2lkz_A RNA-binding protein 5; 99.8 4.5E-19 1.6E-23 145.7 8.3 80 425-509 9-94 (95)
48 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.1E-18 7E-23 140.3 11.0 82 424-510 5-86 (87)
49 3md1_A Nuclear and cytoplasmic 99.8 2.5E-18 8.4E-23 138.5 11.1 81 426-511 2-82 (83)
50 2lxi_A RNA-binding protein 10; 99.8 8.6E-19 2.9E-23 143.5 6.6 83 216-298 1-85 (91)
51 3ns6_A Eukaryotic translation 99.8 5.3E-19 1.8E-23 147.6 5.4 83 425-512 6-95 (100)
52 3s8s_A Histone-lysine N-methyl 99.7 8.1E-18 2.8E-22 142.7 12.3 84 214-297 4-87 (110)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.9E-18 1.7E-22 137.4 10.3 81 423-508 5-85 (85)
54 2cqc_A Arginine/serine-rich sp 99.7 1.1E-17 3.8E-22 138.4 12.5 83 422-509 12-94 (95)
55 1whw_A Hypothetical protein ri 99.7 7.3E-18 2.5E-22 140.7 11.3 85 423-512 6-90 (99)
56 2do4_A Squamous cell carcinoma 99.7 1.3E-17 4.5E-22 139.4 12.6 85 421-511 13-97 (100)
57 2lea_A Serine/arginine-rich sp 99.7 1.2E-18 4.2E-23 153.8 6.6 123 174-297 6-128 (135)
58 2x1f_A MRNA 3'-END-processing 99.7 6.9E-18 2.4E-22 139.9 10.6 84 425-513 2-85 (96)
59 2lkz_A RNA-binding protein 5; 99.7 4.4E-18 1.5E-22 139.7 8.9 83 213-295 6-94 (95)
60 2e5h_A Zinc finger CCHC-type a 99.7 1.3E-17 4.3E-22 137.8 11.4 82 422-508 13-94 (94)
61 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-17 3.8E-22 143.7 11.3 87 421-512 21-107 (115)
62 2jrs_A RNA-binding protein 39; 99.7 7.1E-18 2.4E-22 142.8 9.8 85 421-510 22-106 (108)
63 2cq0_A Eukaryotic translation 99.7 1E-17 3.6E-22 140.8 10.8 85 422-511 12-96 (103)
64 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-17 7.8E-22 141.8 13.1 87 421-512 11-97 (115)
65 3md1_A Nuclear and cytoplasmic 99.7 2E-17 6.7E-22 133.2 11.8 81 217-297 2-82 (83)
66 1x5u_A Splicing factor 3B subu 99.7 1E-17 3.5E-22 141.4 10.6 86 421-511 11-96 (105)
67 2lea_A Serine/arginine-rich sp 99.7 1.1E-18 3.8E-23 154.0 4.8 82 425-511 47-128 (135)
68 2dnz_A Probable RNA-binding pr 99.7 8.7E-18 3E-22 139.1 9.9 83 424-511 4-86 (95)
69 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.7E-17 5.9E-22 134.8 11.1 83 214-296 4-86 (87)
70 1x5t_A Splicing factor 3B subu 99.7 8.5E-18 2.9E-22 139.4 9.3 83 425-512 5-88 (96)
71 2la6_A RNA-binding protein FUS 99.7 1.3E-17 4.4E-22 139.1 10.3 83 421-508 9-99 (99)
72 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1E-17 3.5E-22 140.6 9.6 85 423-512 10-94 (102)
73 1s79_A Lupus LA protein; RRM, 99.7 4.4E-18 1.5E-22 142.4 7.2 81 423-510 9-89 (103)
74 2dgs_A DAZ-associated protein 99.7 1.2E-17 4E-22 139.4 9.8 85 422-512 7-91 (99)
75 3p5t_L Cleavage and polyadenyl 99.7 2.2E-18 7.4E-23 141.0 5.2 82 426-512 2-85 (90)
76 1sjq_A Polypyrimidine tract-bi 99.7 7.4E-18 2.5E-22 139.7 8.4 83 421-512 12-94 (105)
77 3s7r_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 133.2 12.0 80 422-507 8-87 (87)
78 1whw_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 136.2 12.7 87 212-298 4-90 (99)
79 1p27_B RNA-binding protein 8A; 99.7 1.3E-17 4.3E-22 141.1 9.6 84 423-511 21-104 (106)
80 1oo0_B CG8781-PA, drosophila Y 99.7 1.6E-17 5.4E-22 141.5 10.2 85 422-511 23-107 (110)
81 3n9u_C Cleavage and polyadenyl 99.7 1.8E-17 6.3E-22 149.7 11.2 84 424-512 54-139 (156)
82 2cpf_A RNA binding motif prote 99.7 1.6E-17 5.4E-22 138.3 9.7 82 425-511 5-89 (98)
83 3ucg_A Polyadenylate-binding p 99.7 3.1E-17 1E-21 133.9 11.1 80 425-510 6-85 (89)
84 2wbr_A GW182, gawky, LD47780P; 99.7 2.5E-17 8.6E-22 129.7 10.0 74 424-508 6-79 (89)
85 3r27_A HnRNP L, heterogeneous 99.7 1.8E-17 6.2E-22 135.9 9.6 79 422-511 18-98 (100)
86 2cq0_A Eukaryotic translation 99.7 5.7E-17 1.9E-21 136.3 12.8 87 212-298 11-97 (103)
87 2dnm_A SRP46 splicing factor; 99.7 1.1E-17 3.7E-22 140.7 8.4 85 422-511 10-94 (103)
88 2dnh_A Bruno-like 5, RNA bindi 99.7 3.1E-17 1.1E-21 138.4 11.0 84 423-512 13-99 (105)
89 1x5s_A Cold-inducible RNA-bind 99.7 1.2E-17 4.2E-22 140.2 8.3 84 423-511 10-93 (102)
90 2dng_A Eukaryotic translation 99.7 5.2E-17 1.8E-21 136.5 12.2 83 422-511 12-94 (103)
91 2cph_A RNA binding motif prote 99.7 2.5E-17 8.5E-22 139.6 10.2 86 422-512 12-99 (107)
92 2x1f_A MRNA 3'-END-processing 99.7 4.6E-17 1.6E-21 134.9 11.4 84 215-298 1-84 (96)
93 2ywk_A Putative RNA-binding pr 99.7 3.6E-17 1.2E-21 135.3 10.6 81 423-509 14-94 (95)
94 2khc_A Testis-specific RNP-typ 99.7 4.5E-17 1.5E-21 140.6 11.6 83 421-508 36-118 (118)
95 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.9E-17 1.3E-21 132.0 10.5 82 213-294 4-85 (85)
96 2rs2_A Musashi-1, RNA-binding 99.7 3.1E-17 1.1E-21 139.2 10.2 86 421-512 21-106 (109)
97 2dgx_A KIAA0430 protein; RRM d 99.7 5.1E-17 1.8E-21 134.5 11.2 81 423-511 7-91 (96)
98 1wi8_A EIF-4B, eukaryotic tran 99.7 4.4E-17 1.5E-21 137.2 11.0 83 423-512 13-96 (104)
99 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.4E-17 1.2E-21 150.2 11.1 85 423-512 70-154 (165)
100 2div_A TRNA selenocysteine ass 99.7 3.3E-17 1.1E-21 136.7 10.0 83 423-510 7-94 (99)
101 4a8x_A RNA-binding protein wit 99.7 2.6E-17 9E-22 134.0 9.1 81 425-510 4-85 (88)
102 2dgo_A Cytotoxic granule-assoc 99.7 1.6E-16 5.4E-21 136.5 14.4 89 211-299 10-98 (115)
103 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-16 3.8E-21 134.5 13.1 84 422-512 12-95 (103)
104 2dgs_A DAZ-associated protein 99.7 1E-16 3.6E-21 133.6 12.9 86 212-298 6-91 (99)
105 2cqp_A RNA-binding protein 12; 99.7 2.9E-17 9.8E-22 136.8 9.4 83 423-510 13-95 (98)
106 2d9p_A Polyadenylate-binding p 99.7 3.4E-17 1.2E-21 137.6 9.9 84 422-512 12-95 (103)
107 2dh8_A DAZ-associated protein 99.7 2.9E-17 1E-21 138.6 9.4 85 422-512 13-97 (105)
108 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.7E-17 1.6E-21 149.3 11.5 122 177-298 11-154 (165)
109 3ulh_A THO complex subunit 4; 99.7 6.6E-17 2.3E-21 136.9 11.6 81 422-508 26-106 (107)
110 3ns6_A Eukaryotic translation 99.7 6.3E-18 2.2E-22 141.1 5.1 85 214-298 4-95 (100)
111 1u6f_A Tcubp1, RNA-binding pro 99.7 9E-17 3.1E-21 143.1 13.0 86 421-511 38-123 (139)
112 2cq4_A RNA binding motif prote 99.7 2.9E-17 1E-21 140.8 9.4 83 424-512 24-106 (114)
113 2cpe_A RNA-binding protein EWS 99.7 4.1E-17 1.4E-21 139.7 10.2 86 422-512 12-105 (113)
114 3lqv_A PRE-mRNA branch site pr 99.7 1.9E-17 6.6E-22 142.2 8.1 81 423-511 6-86 (115)
115 2dnz_A Probable RNA-binding pr 99.7 6.9E-17 2.4E-21 133.6 11.1 85 214-298 3-87 (95)
116 2cqc_A Arginine/serine-rich sp 99.7 7.4E-17 2.5E-21 133.4 11.2 84 212-295 11-94 (95)
117 2cqd_A RNA-binding region cont 99.7 1.1E-16 3.7E-21 137.7 12.6 83 422-510 14-96 (116)
118 3p5t_L Cleavage and polyadenyl 99.7 1.1E-17 3.7E-22 136.8 6.0 81 217-297 2-84 (90)
119 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.6E-17 2.3E-21 135.6 10.9 87 212-298 8-94 (102)
120 2do4_A Squamous cell carcinoma 99.7 1.1E-16 3.7E-21 133.7 12.2 85 212-297 13-97 (100)
121 1p1t_A Cleavage stimulation fa 99.7 2.7E-17 9.1E-22 138.6 8.5 84 425-513 8-91 (104)
122 2dgw_A Probable RNA-binding pr 99.7 1E-16 3.5E-21 131.4 11.7 81 423-511 8-88 (91)
123 2cq3_A RNA-binding protein 9; 99.7 1.4E-16 4.8E-21 133.9 12.8 84 422-512 12-95 (103)
124 2cqg_A TDP-43, TAR DNA-binding 99.7 1.4E-16 4.9E-21 133.8 12.9 84 422-512 12-95 (103)
125 2dgp_A Bruno-like 4, RNA bindi 99.7 3.1E-17 1E-21 138.8 8.8 85 422-511 10-97 (106)
126 2fy1_A RNA-binding motif prote 99.7 4.2E-17 1.4E-21 140.0 9.7 82 424-511 6-87 (116)
127 2jrs_A RNA-binding protein 39; 99.7 7.2E-17 2.4E-21 136.6 11.0 86 212-297 22-107 (108)
128 2e5h_A Zinc finger CCHC-type a 99.7 8E-17 2.7E-21 132.9 11.0 83 212-294 12-94 (94)
129 2dnm_A SRP46 splicing factor; 99.7 7.7E-17 2.6E-21 135.5 10.9 87 211-297 8-94 (103)
130 1x5u_A Splicing factor 3B subu 99.7 9.2E-17 3.1E-21 135.5 11.4 88 211-298 10-97 (105)
131 2cq1_A PTB-like protein L; RRM 99.7 9.9E-17 3.4E-21 133.2 11.2 82 422-512 12-93 (101)
132 2kxn_B Transformer-2 protein h 99.7 2.1E-17 7.2E-22 144.5 7.5 86 421-511 42-127 (129)
133 1x5s_A Cold-inducible RNA-bind 99.7 7.4E-17 2.5E-21 135.3 10.4 87 212-298 8-94 (102)
134 2dhg_A TRNA selenocysteine ass 99.7 2.9E-17 9.9E-22 138.4 7.8 85 422-512 6-92 (104)
135 1x5t_A Splicing factor 3B subu 99.7 6.3E-17 2.1E-21 134.1 9.7 85 214-298 3-88 (96)
136 2mss_A Protein (musashi1); RNA 99.7 1.7E-17 5.9E-22 130.6 6.0 75 427-507 1-75 (75)
137 1p27_B RNA-binding protein 8A; 99.7 9.2E-17 3.2E-21 135.8 10.9 86 212-297 19-104 (106)
138 1x4h_A RNA-binding protein 28; 99.7 9.9E-17 3.4E-21 136.8 11.1 92 421-512 11-103 (111)
139 2cpy_A RNA-binding protein 12; 99.7 6E-17 2.1E-21 138.7 9.7 83 423-512 13-96 (114)
140 2la6_A RNA-binding protein FUS 99.7 1.2E-16 4.3E-21 133.1 11.4 84 211-294 8-99 (99)
141 2ek1_A RNA-binding protein 12; 99.7 3.1E-17 1.1E-21 135.7 7.6 80 425-509 15-94 (95)
142 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.2E-17 4E-22 139.5 5.1 83 421-510 15-98 (100)
143 1x4b_A Heterogeneous nuclear r 99.7 5.9E-17 2E-21 139.4 9.6 83 424-512 26-108 (116)
144 2dnh_A Bruno-like 5, RNA bindi 99.7 2E-16 7E-21 133.4 12.7 86 212-298 11-99 (105)
145 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-16 3.7E-21 137.5 11.2 87 212-298 21-107 (115)
146 2db1_A Heterogeneous nuclear r 99.7 9.7E-17 3.3E-21 138.2 10.7 83 422-511 14-99 (118)
147 2dgv_A HnRNP M, heterogeneous 99.7 7.3E-17 2.5E-21 132.6 9.4 82 423-511 6-87 (92)
148 2d9p_A Polyadenylate-binding p 99.7 2.1E-16 7.2E-21 132.8 12.3 85 212-298 11-95 (103)
149 2cph_A RNA binding motif prote 99.7 1.7E-16 5.9E-21 134.4 11.8 87 212-298 11-99 (107)
150 1x4h_A RNA-binding protein 28; 99.7 2.2E-16 7.4E-21 134.7 12.5 87 212-298 11-103 (111)
151 2hgl_A HNRPF protein, heteroge 99.7 4.8E-17 1.7E-21 142.8 8.5 84 422-512 41-127 (136)
152 1oo0_B CG8781-PA, drosophila Y 99.7 1.5E-16 5.1E-21 135.4 11.2 86 212-297 22-107 (110)
153 2wbr_A GW182, gawky, LD47780P; 99.7 8.8E-17 3E-21 126.6 8.8 75 214-294 5-79 (89)
154 2kt5_A RNA and export factor-b 99.7 2.5E-16 8.4E-21 137.2 12.7 84 421-510 31-114 (124)
155 1x4e_A RNA binding motif, sing 99.7 1.2E-17 4.2E-22 135.0 3.9 80 424-508 4-83 (85)
156 2nlw_A Eukaryotic translation 99.7 9E-17 3.1E-21 135.4 9.4 82 422-510 12-100 (105)
157 3ex7_B RNA-binding protein 8A; 99.7 5.7E-17 2E-21 141.7 8.5 86 422-512 19-104 (126)
158 2err_A Ataxin-2-binding protei 99.7 9.5E-17 3.2E-21 136.2 9.5 83 421-510 25-107 (109)
159 2cpf_A RNA binding motif prote 99.7 1.5E-16 5E-21 132.4 10.5 85 214-298 3-90 (98)
160 4a8x_A RNA-binding protein wit 99.7 1.4E-16 4.9E-21 129.6 10.2 83 215-297 3-86 (88)
161 2m2b_A RNA-binding protein 10; 99.7 2.6E-17 8.7E-22 144.8 6.1 82 423-510 21-108 (131)
162 2dnn_A RNA-binding protein 12; 99.7 1.1E-16 3.8E-21 134.9 9.6 78 425-510 16-93 (109)
163 1x4d_A Matrin 3; structural ge 99.7 4E-17 1.4E-21 135.4 6.8 80 423-511 13-93 (102)
164 2div_A TRNA selenocysteine ass 99.7 1.3E-16 4.3E-21 133.1 9.9 86 212-297 5-95 (99)
165 2a3j_A U1 small nuclear ribonu 99.7 9.4E-17 3.2E-21 139.3 9.4 83 422-512 26-112 (127)
166 2dng_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 131.4 12.6 85 212-298 11-95 (103)
167 3s7r_A Heterogeneous nuclear r 99.7 3E-16 1E-20 127.4 11.8 81 212-293 7-87 (87)
168 3lqv_A PRE-mRNA branch site pr 99.7 5.5E-17 1.9E-21 139.4 7.7 81 213-296 5-85 (115)
169 2cpi_A CCR4-NOT transcription 99.7 8.4E-17 2.9E-21 137.1 8.8 83 424-511 14-102 (111)
170 1wel_A RNA-binding protein 12; 99.7 4.9E-17 1.7E-21 141.6 7.4 87 422-514 22-108 (124)
171 2dis_A Unnamed protein product 99.7 7.3E-17 2.5E-21 137.2 8.1 84 424-512 7-94 (109)
172 2do0_A HnRNP M, heterogeneous 99.7 2.4E-16 8.1E-21 135.1 11.3 82 423-510 13-94 (114)
173 1sjq_A Polypyrimidine tract-bi 99.7 1.1E-16 3.7E-21 132.6 8.7 83 211-299 11-95 (105)
174 1wg5_A Heterogeneous nuclear r 99.7 1E-16 3.4E-21 134.9 8.6 81 423-510 13-94 (104)
175 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.7E-16 9.2E-21 142.9 12.1 85 423-512 37-121 (156)
176 1wez_A HnRNP H', FTP-3, hetero 99.7 7E-17 2.4E-21 135.0 7.5 81 423-511 13-93 (102)
177 3ucg_A Polyadenylate-binding p 99.7 2.1E-16 7.3E-21 128.9 10.2 80 216-296 6-85 (89)
178 2dgp_A Bruno-like 4, RNA bindi 99.7 1.8E-16 6.2E-21 133.9 10.1 87 212-298 9-98 (106)
179 1x4a_A Splicing factor, argini 99.7 3.7E-16 1.3E-20 132.7 12.0 82 422-511 19-100 (109)
180 3r27_A HnRNP L, heterogeneous 99.7 2E-16 6.9E-21 129.6 9.8 80 212-297 17-98 (100)
181 2hvz_A Splicing factor, argini 99.7 4E-17 1.4E-21 136.7 5.7 76 426-511 1-76 (101)
182 2ad9_A Polypyrimidine tract-bi 99.7 7.5E-17 2.6E-21 137.2 7.4 82 422-512 28-109 (119)
183 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.4E-17 1.5E-21 129.0 5.6 77 426-508 1-77 (77)
184 2kxn_B Transformer-2 protein h 99.7 1.4E-16 4.9E-21 139.2 9.4 87 211-297 41-127 (129)
185 1s79_A Lupus LA protein; RRM, 99.7 1E-16 3.5E-21 134.0 8.1 81 213-295 8-88 (103)
186 1wi8_A EIF-4B, eukaryotic tran 99.7 3.2E-16 1.1E-20 131.9 11.2 85 212-298 11-96 (104)
187 2cpe_A RNA-binding protein EWS 99.7 3.1E-16 1.1E-20 134.2 11.3 87 212-298 11-105 (113)
188 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.3E-16 1.5E-20 138.9 12.7 81 422-507 60-140 (140)
189 2ki2_A SS-DNA binding protein 99.7 2.3E-17 7.9E-22 135.0 4.0 81 426-512 2-82 (90)
190 3pgw_S U1-70K; protein-RNA com 99.7 3.6E-17 1.2E-21 172.9 6.6 83 424-511 101-183 (437)
191 3ulh_A THO complex subunit 4; 99.7 4.3E-16 1.5E-20 131.9 11.8 82 212-294 25-106 (107)
192 2fy1_A RNA-binding motif prote 99.7 2.8E-16 9.7E-21 134.8 10.8 85 213-298 4-88 (116)
193 2ywk_A Putative RNA-binding pr 99.7 2.7E-16 9.2E-21 130.0 10.3 82 212-294 12-93 (95)
194 2khc_A Testis-specific RNP-typ 99.7 2.7E-16 9.1E-21 135.7 10.7 83 212-294 36-118 (118)
195 2jwn_A Embryonic polyadenylate 99.7 2.4E-16 8.1E-21 137.3 10.4 80 425-510 36-115 (124)
196 2dhg_A TRNA selenocysteine ass 99.7 2.4E-16 8.3E-21 132.7 9.9 86 212-298 5-92 (104)
197 2cq3_A RNA-binding protein 9; 99.7 1.1E-15 3.7E-20 128.4 13.8 86 211-298 10-95 (103)
198 3pgw_S U1-70K; protein-RNA com 99.7 5.9E-17 2E-21 171.2 7.4 86 213-298 99-184 (437)
199 2dgx_A KIAA0430 protein; RRM d 99.7 4.2E-16 1.4E-20 129.0 11.0 83 212-297 5-91 (96)
200 1x5o_A RNA binding motif, sing 99.7 4.1E-16 1.4E-20 133.6 11.3 83 422-510 22-112 (114)
201 2cqp_A RNA-binding protein 12; 99.7 2.1E-16 7.2E-21 131.5 9.2 84 213-296 12-95 (98)
202 3n9u_C Cleavage and polyadenyl 99.7 2.6E-16 8.9E-21 142.2 10.4 84 214-297 53-138 (156)
203 2jvr_A Nucleolar protein 3; RN 99.7 2.8E-16 9.5E-21 132.7 9.7 79 423-510 26-105 (111)
204 2dgw_A Probable RNA-binding pr 99.7 7.2E-16 2.5E-20 126.3 11.9 83 212-297 6-88 (91)
205 2cqd_A RNA-binding region cont 99.7 6.2E-16 2.1E-20 132.9 12.0 85 212-297 13-97 (116)
206 2dgv_A HnRNP M, heterogeneous 99.7 5.3E-16 1.8E-20 127.4 11.1 84 212-297 4-87 (92)
207 2mss_A Protein (musashi1); RNA 99.7 1E-16 3.5E-21 126.1 6.4 75 218-293 1-75 (75)
208 2hvz_A Splicing factor, argini 99.7 1.4E-16 4.9E-21 133.3 7.5 76 217-297 1-76 (101)
209 1p1t_A Cleavage stimulation fa 99.7 2E-16 6.8E-21 133.2 8.4 84 215-298 7-90 (104)
210 1wex_A Hypothetical protein (r 99.7 2.4E-16 8.2E-21 131.7 8.8 80 423-511 13-92 (104)
211 2fc9_A NCL protein; structure 99.7 4.1E-16 1.4E-20 130.5 10.2 80 423-511 13-92 (101)
212 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.9E-16 3.4E-20 128.6 12.6 85 212-298 11-95 (103)
213 2dh8_A DAZ-associated protein 99.7 3.3E-16 1.1E-20 132.1 9.6 86 212-298 12-97 (105)
214 1fj7_A Nucleolin RBD1, protein 99.7 3.8E-17 1.3E-21 136.8 3.8 82 423-511 15-96 (101)
215 1iqt_A AUF1, heterogeneous nuc 99.6 6.8E-17 2.3E-21 127.2 4.9 75 427-507 1-75 (75)
216 1x4c_A Splicing factor, argini 99.6 7.3E-16 2.5E-20 130.6 11.7 77 423-511 13-94 (108)
217 2lmi_A GRSF-1, G-rich sequence 99.6 6.8E-17 2.3E-21 136.7 5.2 84 422-512 8-94 (107)
218 1x4e_A RNA binding motif, sing 99.6 1.1E-16 3.8E-21 129.3 6.2 80 214-293 3-82 (85)
219 2ek1_A RNA-binding protein 12; 99.6 1.9E-16 6.4E-21 131.0 7.6 82 213-294 12-93 (95)
220 2nlw_A Eukaryotic translation 99.6 4E-16 1.4E-20 131.4 9.6 85 212-298 11-102 (105)
221 1u6f_A Tcubp1, RNA-binding pro 99.6 9.8E-16 3.4E-20 136.3 12.7 88 212-299 38-125 (139)
222 2rs2_A Musashi-1, RNA-binding 99.6 5.1E-16 1.7E-20 131.6 10.3 85 212-297 21-105 (109)
223 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.8E-16 6.2E-21 132.3 7.4 84 212-297 15-99 (100)
224 2cpi_A CCR4-NOT transcription 99.6 5.2E-16 1.8E-20 132.1 10.3 86 212-297 11-102 (111)
225 2do0_A HnRNP M, heterogeneous 99.6 2.4E-15 8.3E-20 128.8 14.6 84 212-296 11-94 (114)
226 1x4f_A Matrin 3; structural ge 99.6 2.5E-16 8.4E-21 132.5 8.1 81 422-511 22-103 (112)
227 2cpx_A Hypothetical protein FL 99.6 1.5E-16 5.1E-21 136.6 7.0 86 422-512 22-107 (115)
228 3ex7_B RNA-binding protein 8A; 99.6 4.5E-16 1.6E-20 136.0 10.1 87 212-298 18-104 (126)
229 2fc8_A NCL protein; structure 99.6 7.7E-16 2.6E-20 129.1 10.9 83 422-512 12-94 (102)
230 2krb_A Eukaryotic translation 99.6 1.2E-16 4.3E-21 127.7 5.7 72 426-504 2-80 (81)
231 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6E-20 127.1 13.1 85 212-298 11-95 (103)
232 2dha_A FLJ20171 protein; RRM d 99.6 2E-16 6.7E-21 136.3 7.3 82 424-512 22-107 (123)
233 2ytc_A PRE-mRNA-splicing facto 99.6 7.5E-16 2.6E-20 124.4 10.3 76 422-508 9-85 (85)
234 2err_A Ataxin-2-binding protei 99.6 6.6E-16 2.3E-20 131.0 10.1 85 211-297 24-108 (109)
235 2dis_A Unnamed protein product 99.6 7.8E-16 2.7E-20 130.8 10.5 86 213-298 5-94 (109)
236 1wez_A HnRNP H', FTP-3, hetero 99.6 7.8E-16 2.7E-20 128.6 10.3 83 212-297 11-93 (102)
237 2xnq_A Nuclear polyadenylated 99.6 9.9E-16 3.4E-20 126.9 10.8 77 421-510 18-95 (97)
238 2kt5_A RNA and export factor-b 99.6 1.2E-15 4.2E-20 132.8 11.9 87 212-299 31-117 (124)
239 1wg5_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 128.3 11.3 85 212-298 11-96 (104)
240 1x4d_A Matrin 3; structural ge 99.6 7.1E-16 2.4E-20 127.8 9.7 80 212-297 11-93 (102)
241 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.7E-16 5.8E-21 125.6 5.7 76 217-293 1-76 (77)
242 2dnq_A RNA-binding protein 4B; 99.6 5.9E-16 2E-20 126.5 9.1 77 423-512 6-82 (90)
243 2xs2_A Deleted in azoospermia- 99.6 2.5E-16 8.6E-21 132.0 7.0 81 424-512 8-88 (102)
244 2la4_A Nuclear and cytoplasmic 99.6 4.4E-16 1.5E-20 130.3 8.4 77 423-510 25-101 (101)
245 1x5o_A RNA binding motif, sing 99.6 1.6E-15 5.5E-20 129.9 12.0 84 212-296 21-112 (114)
246 2cq1_A PTB-like protein L; RRM 99.6 2.6E-15 8.7E-20 124.6 12.7 81 212-298 11-93 (101)
247 2ki2_A SS-DNA binding protein 99.6 1.3E-16 4.3E-21 130.6 4.6 81 217-298 2-82 (90)
248 2cq4_A RNA binding motif prote 99.6 5.6E-16 1.9E-20 132.7 8.9 82 215-297 24-105 (114)
249 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.7E-15 5.7E-20 137.7 12.5 86 212-297 35-120 (156)
250 1x4g_A Nucleolysin TIAR; struc 99.6 7.9E-16 2.7E-20 130.7 9.7 80 422-512 22-101 (109)
251 2j8a_A Histone-lysine N-methyl 99.6 7.3E-16 2.5E-20 129.5 9.0 79 426-509 3-95 (136)
252 1why_A Hypothetical protein ri 99.6 1E-15 3.5E-20 127.0 9.9 79 422-511 14-94 (97)
253 1nu4_A U1A RNA binding domain; 99.6 3.2E-16 1.1E-20 130.1 6.8 82 423-512 6-91 (97)
254 2cpd_A Apobec-1 stimulating pr 99.6 2.7E-15 9.2E-20 124.9 12.3 77 422-511 12-90 (99)
255 3q2s_C Cleavage and polyadenyl 99.6 4.8E-16 1.6E-20 150.0 8.9 84 424-512 67-152 (229)
256 2cpj_A Non-POU domain-containi 99.6 7.4E-16 2.5E-20 128.4 8.8 79 422-511 12-90 (99)
257 2e5j_A Methenyltetrahydrofolat 99.6 8.6E-16 2.9E-20 127.4 9.1 80 422-511 16-95 (97)
258 2m2b_A RNA-binding protein 10; 99.6 3E-16 1E-20 138.0 6.6 85 212-297 19-109 (131)
259 2ad9_A Polypyrimidine tract-bi 99.6 1.6E-15 5.6E-20 128.9 10.9 82 212-299 27-110 (119)
260 2dgt_A RNA-binding protein 30; 99.6 2.1E-15 7.2E-20 123.7 11.2 77 422-511 7-83 (92)
261 1x4b_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 131.4 9.8 83 215-298 26-108 (116)
262 2jvo_A Nucleolar protein 3; nu 99.6 1E-15 3.4E-20 129.4 9.4 77 422-511 28-104 (108)
263 2cpy_A RNA-binding protein 12; 99.6 6.6E-16 2.3E-20 132.2 8.4 84 212-297 11-95 (114)
264 1fjc_A Nucleolin RBD2, protein 99.6 9.6E-16 3.3E-20 126.9 8.9 80 422-511 13-92 (96)
265 2a3j_A U1 small nuclear ribonu 99.6 1.1E-15 3.8E-20 132.5 9.7 85 212-299 25-113 (127)
266 1x4a_A Splicing factor, argini 99.6 2.4E-15 8.3E-20 127.7 11.6 84 212-298 18-101 (109)
267 1wex_A Hypothetical protein (r 99.6 2.1E-15 7.3E-20 125.9 11.0 81 212-298 11-93 (104)
268 2dgu_A Heterogeneous nuclear r 99.6 1.7E-15 5.9E-20 127.1 10.4 77 423-512 9-85 (103)
269 2fc9_A NCL protein; structure 99.6 3.3E-15 1.1E-19 124.9 12.1 82 212-297 11-92 (101)
270 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.7E-15 5.8E-20 135.0 10.9 82 212-293 59-140 (140)
271 2hgm_A HNRPF protein, heteroge 99.6 4.4E-16 1.5E-20 134.3 6.7 81 423-511 40-122 (126)
272 2lcw_A RNA-binding protein FUS 99.4 3.8E-17 1.3E-21 140.5 0.0 84 424-512 6-97 (116)
273 3egn_A RNA-binding protein 40; 99.6 2.5E-16 8.6E-21 140.9 5.3 86 422-512 42-132 (143)
274 2db1_A Heterogeneous nuclear r 99.6 9.9E-16 3.4E-20 131.8 8.8 83 213-297 14-99 (118)
275 2hgl_A HNRPF protein, heteroge 99.6 7E-16 2.4E-20 135.4 8.0 83 212-296 40-125 (136)
276 2jwn_A Embryonic polyadenylate 99.6 1.5E-15 5.3E-20 132.2 10.1 82 215-297 35-116 (124)
277 2krb_A Eukaryotic translation 99.6 4.8E-16 1.7E-20 124.2 6.0 73 216-290 1-80 (81)
278 2fc8_A NCL protein; structure 99.6 4E-15 1.4E-19 124.7 11.7 85 211-298 10-94 (102)
279 1wel_A RNA-binding protein 12; 99.6 5.9E-16 2E-20 134.7 6.7 84 213-297 22-105 (124)
280 2dnp_A RNA-binding protein 14; 99.6 2.5E-15 8.4E-20 122.8 9.9 76 422-510 6-81 (90)
281 2jvr_A Nucleolar protein 3; RN 99.6 1.5E-15 5E-20 128.3 8.2 80 213-296 25-105 (111)
282 2dnn_A RNA-binding protein 12; 99.6 1.5E-15 5.1E-20 127.9 8.3 80 215-297 15-94 (109)
283 2dnq_A RNA-binding protein 4B; 99.6 3.8E-15 1.3E-19 121.6 10.5 79 212-298 4-82 (90)
284 1x4f_A Matrin 3; structural ge 99.6 1.5E-15 5.2E-20 127.7 8.3 80 213-298 22-104 (112)
285 2ytc_A PRE-mRNA-splicing facto 99.6 3.5E-15 1.2E-19 120.5 9.9 77 212-294 8-85 (85)
286 2hgn_A Heterogeneous nuclear r 99.6 2.6E-16 9E-21 138.5 3.5 81 423-511 44-124 (139)
287 1whx_A Hypothetical protein ri 99.6 9.5E-16 3.2E-20 130.4 6.7 75 425-510 10-84 (111)
288 1x4c_A Splicing factor, argini 99.6 5.2E-15 1.8E-19 125.3 11.2 80 212-298 11-95 (108)
289 2f3j_A RNA and export factor b 99.6 2.2E-15 7.4E-20 139.3 9.5 85 421-511 84-168 (177)
290 2cpj_A Non-POU domain-containi 99.6 3.4E-15 1.1E-19 124.4 9.8 81 212-298 11-91 (99)
291 1nu4_A U1A RNA binding domain; 99.6 1.7E-15 5.9E-20 125.6 7.8 84 212-298 4-91 (97)
292 1why_A Hypothetical protein ri 99.6 4.4E-15 1.5E-19 123.2 10.2 80 212-297 13-94 (97)
293 2e44_A Insulin-like growth fac 99.6 1.9E-15 6.5E-20 125.1 8.0 79 424-511 14-93 (96)
294 2cqh_A IGF-II mRNA-binding pro 99.6 1.4E-15 4.8E-20 125.1 7.0 76 424-511 7-84 (93)
295 2lmi_A GRSF-1, G-rich sequence 99.6 8.1E-16 2.8E-20 130.0 5.6 84 212-297 7-93 (107)
296 1iqt_A AUF1, heterogeneous nuc 99.6 5.3E-16 1.8E-20 122.0 4.2 75 218-293 1-75 (75)
297 3d2w_A TAR DNA-binding protein 99.6 3.8E-15 1.3E-19 121.0 9.3 79 422-512 8-86 (89)
298 2hgn_A Heterogeneous nuclear r 99.6 4.8E-16 1.6E-20 136.8 4.1 121 173-297 2-124 (139)
299 1wf1_A RNA-binding protein RAL 99.6 4.8E-15 1.6E-19 126.0 10.1 75 423-510 25-100 (110)
300 2kvi_A Nuclear polyadenylated 99.6 1.5E-15 5.1E-20 125.7 6.5 77 422-511 7-84 (96)
301 1x4g_A Nucleolysin TIAR; struc 99.6 6E-15 2.1E-19 125.2 10.3 80 213-298 22-101 (109)
302 2e5g_A U6 snRNA-specific termi 99.6 5.1E-15 1.7E-19 121.9 9.5 76 425-511 8-83 (94)
303 2la4_A Nuclear and cytoplasmic 99.6 2.8E-15 9.4E-20 125.4 7.9 78 213-296 24-101 (101)
304 2cq2_A Hypothetical protein LO 99.6 3.1E-15 1.1E-19 125.8 8.1 78 423-511 23-107 (114)
305 1fj7_A Nucleolin RBD1, protein 99.6 4E-16 1.4E-20 130.6 2.6 84 213-298 14-97 (101)
306 1wg1_A KIAA1579 protein, homol 99.6 4.2E-15 1.4E-19 120.7 8.5 73 425-509 5-77 (88)
307 2diu_A KIAA0430 protein; struc 99.6 3E-15 1E-19 118.9 7.2 72 426-512 10-86 (96)
308 2pe8_A Splicing factor 45; RRM 99.6 1.3E-14 4.4E-19 121.4 11.5 81 424-509 7-93 (105)
309 2dgt_A RNA-binding protein 30; 99.6 1.7E-14 5.8E-19 118.3 12.0 79 212-298 6-84 (92)
310 3zzy_A Polypyrimidine tract-bi 99.6 1.1E-14 3.9E-19 125.2 11.2 77 425-511 28-107 (130)
311 2cpx_A Hypothetical protein FL 99.6 1.4E-15 4.8E-20 130.5 5.6 86 213-298 22-107 (115)
312 2xnq_A Nuclear polyadenylated 99.6 1.2E-14 4E-19 120.4 10.9 77 212-296 18-95 (97)
313 3q2s_C Cleavage and polyadenyl 99.6 3E-15 1E-19 144.4 8.4 83 215-297 67-151 (229)
314 1whx_A Hypothetical protein ri 99.6 4.7E-15 1.6E-19 126.0 8.7 76 215-296 9-84 (111)
315 2dgu_A Heterogeneous nuclear r 99.6 1.2E-14 4.1E-19 121.9 11.1 79 212-298 7-85 (103)
316 2e5j_A Methenyltetrahydrofolat 99.6 5.3E-15 1.8E-19 122.6 8.6 81 212-297 15-95 (97)
317 1x5p_A Negative elongation fac 99.6 2.3E-14 8E-19 118.7 12.5 77 423-512 13-89 (97)
318 2jvo_A Nucleolar protein 3; nu 99.6 7.2E-15 2.5E-19 124.2 9.5 78 212-297 27-104 (108)
319 2dnp_A RNA-binding protein 14; 99.6 1.2E-14 4.1E-19 118.6 10.5 78 212-297 5-82 (90)
320 1fjc_A Nucleolin RBD2, protein 99.6 5.3E-15 1.8E-19 122.4 8.2 81 212-297 12-92 (96)
321 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-14 5.1E-19 124.5 11.0 83 213-300 25-110 (130)
322 2j8a_A Histone-lysine N-methyl 99.6 5.3E-15 1.8E-19 124.3 7.9 78 217-294 3-94 (136)
323 1sjr_A Polypyrimidine tract-bi 99.6 9.6E-15 3.3E-19 130.6 10.1 78 425-511 46-125 (164)
324 2lcw_A RNA-binding protein FUS 99.3 2.7E-16 9.1E-21 135.2 0.0 86 213-298 4-97 (116)
325 2cpd_A Apobec-1 stimulating pr 99.6 3.8E-14 1.3E-18 117.9 12.7 78 212-297 11-90 (99)
326 2xs2_A Deleted in azoospermia- 99.6 5.3E-15 1.8E-19 123.9 7.4 82 214-298 7-88 (102)
327 2dha_A FLJ20171 protein; RRM d 99.6 3.6E-15 1.2E-19 128.4 6.4 82 214-297 21-106 (123)
328 1sjr_A Polypyrimidine tract-bi 99.6 1.4E-14 4.8E-19 129.5 10.4 82 213-298 43-126 (164)
329 2dnl_A Cytoplasmic polyadenyla 99.5 6.7E-15 2.3E-19 125.9 7.8 78 424-509 7-87 (114)
330 2cq2_A Hypothetical protein LO 99.5 1.2E-14 4.2E-19 122.1 8.9 81 212-298 21-108 (114)
331 2cqh_A IGF-II mRNA-binding pro 99.5 9.5E-15 3.3E-19 120.1 8.1 80 212-298 4-85 (93)
332 2hgm_A HNRPF protein, heteroge 99.5 7.9E-15 2.7E-19 126.5 7.7 82 212-296 38-121 (126)
333 2kvi_A Nuclear polyadenylated 99.5 9.8E-15 3.4E-19 120.7 8.0 78 212-297 6-84 (96)
334 2diu_A KIAA0430 protein; struc 99.5 1.5E-14 5.1E-19 114.9 8.5 75 215-299 8-87 (96)
335 1wf1_A RNA-binding protein RAL 99.5 1.6E-14 5.5E-19 122.7 9.1 76 214-297 25-101 (110)
336 2f3j_A RNA and export factor b 99.5 1.7E-14 5.7E-19 133.3 9.6 85 212-297 84-168 (177)
337 2hzc_A Splicing factor U2AF 65 99.5 2.2E-14 7.4E-19 116.3 8.9 71 424-506 5-86 (87)
338 2e5i_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 120.7 11.7 75 426-511 26-103 (124)
339 2e5g_A U6 snRNA-specific termi 99.5 3.7E-14 1.3E-18 116.7 10.2 79 213-297 5-83 (94)
340 2e44_A Insulin-like growth fac 99.5 1.8E-14 6.1E-19 119.2 8.3 81 213-297 12-93 (96)
341 1wg1_A KIAA1579 protein, homol 99.5 2.9E-14 9.8E-19 115.8 9.4 76 215-297 4-79 (88)
342 1x5p_A Negative elongation fac 99.5 7.9E-14 2.7E-18 115.5 12.2 79 212-298 11-89 (97)
343 3d2w_A TAR DNA-binding protein 99.5 3.9E-14 1.3E-18 115.1 9.6 77 212-297 7-85 (89)
344 1wf0_A TDP-43, TAR DNA-binding 99.5 1.2E-14 4E-19 118.2 6.1 76 425-512 5-80 (88)
345 3egn_A RNA-binding protein 40; 99.5 7.1E-15 2.4E-19 131.4 5.3 82 213-297 42-131 (143)
346 2voo_A Lupus LA protein; RNA-b 99.5 9.2E-14 3.2E-18 130.3 13.0 113 181-295 63-186 (193)
347 3beg_B Splicing factor, argini 99.5 1E-14 3.5E-19 124.8 5.8 75 424-510 15-94 (115)
348 2pe8_A Splicing factor 45; RRM 99.5 7.1E-14 2.4E-18 116.9 10.4 84 213-296 5-94 (105)
349 2voo_A Lupus LA protein; RNA-b 99.5 6.9E-14 2.4E-18 131.1 11.1 78 425-509 109-186 (193)
350 2e5i_A Heterogeneous nuclear r 99.5 1E-13 3.6E-18 118.8 11.2 77 217-299 26-105 (124)
351 2bz2_A Negative elongation fac 99.5 4.5E-14 1.5E-18 121.7 7.8 78 422-512 36-113 (121)
352 2dnl_A Cytoplasmic polyadenyla 99.5 8.5E-14 2.9E-18 119.0 9.2 79 213-294 5-86 (114)
353 3beg_B Splicing factor, argini 99.5 6.1E-14 2.1E-18 120.0 7.5 76 214-296 14-94 (115)
354 3v4m_A Splicing factor U2AF 65 99.5 1.3E-13 4.3E-18 115.5 8.3 82 424-510 4-97 (105)
355 2hzc_A Splicing factor U2AF 65 99.5 1.3E-13 4.4E-18 111.7 7.9 72 214-292 4-86 (87)
356 2dit_A HIV TAT specific factor 99.4 5.2E-13 1.8E-17 113.6 11.3 81 422-511 12-103 (112)
357 3u1l_A PRE-mRNA-splicing facto 99.4 9.7E-14 3.3E-18 132.8 7.4 79 423-512 132-231 (240)
358 1wf0_A TDP-43, TAR DNA-binding 99.4 1.2E-13 4E-18 112.2 6.7 78 214-298 3-80 (88)
359 2bz2_A Negative elongation fac 99.4 2.6E-13 9E-18 116.9 8.8 79 212-298 35-113 (121)
360 3ue2_A Poly(U)-binding-splicin 99.4 6.4E-13 2.2E-17 113.3 8.9 81 424-509 19-108 (118)
361 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.7E-17 111.0 11.0 84 212-299 11-105 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.4 4.9E-13 1.7E-17 127.9 7.8 79 213-297 131-230 (240)
363 1jmt_A Splicing factor U2AF 35 99.4 2E-13 6.9E-18 114.1 4.2 72 430-507 20-103 (104)
364 3v4m_A Splicing factor U2AF 65 99.4 1.2E-12 4.2E-17 109.4 8.9 83 214-296 3-97 (105)
365 3ue2_A Poly(U)-binding-splicin 99.3 3E-12 1E-16 109.1 9.5 81 215-295 19-108 (118)
366 1jmt_A Splicing factor U2AF 35 99.3 4.8E-13 1.7E-17 111.7 4.4 72 221-293 20-103 (104)
367 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.1E-11 3.7E-16 102.1 10.1 75 425-511 10-91 (100)
368 3s6e_A RNA-binding protein 39; 99.2 2.2E-11 7.5E-16 103.0 9.1 79 423-510 5-93 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.2 6.2E-11 2.1E-15 97.6 10.1 75 216-297 10-91 (100)
370 3s6e_A RNA-binding protein 39; 99.2 5.8E-11 2E-15 100.3 9.7 79 213-295 4-92 (114)
371 3tht_A Alkylated DNA repair pr 99.2 3.8E-11 1.3E-15 121.3 9.2 76 422-508 15-97 (345)
372 3tht_A Alkylated DNA repair pr 99.1 8.8E-11 3E-15 118.6 9.3 77 212-294 14-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 8.1E-10 2.8E-14 87.0 8.9 74 422-509 4-85 (91)
374 1owx_A Lupus LA protein, SS-B, 99.0 3.4E-10 1.2E-14 95.5 7.0 80 422-510 15-96 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.9 3.7E-09 1.3E-13 83.2 8.2 75 213-296 4-86 (91)
376 1owx_A Lupus LA protein, SS-B, 98.8 1E-08 3.5E-13 86.4 9.4 76 212-293 14-93 (121)
377 1ufw_A Synaptojanin 2; RNP dom 98.8 1.1E-08 3.8E-13 80.8 7.3 73 421-507 11-92 (95)
378 3dxb_A Thioredoxin N-terminall 98.7 2.5E-08 8.6E-13 95.7 8.8 78 426-508 125-211 (222)
379 3dxb_A Thioredoxin N-terminall 98.7 1E-07 3.5E-12 91.4 12.1 69 227-295 140-212 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 4.2E-08 1.4E-12 77.5 5.9 73 213-294 12-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.4 1.3E-06 4.5E-11 70.2 9.3 73 425-508 21-98 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.1 8.4E-06 2.9E-10 65.6 8.5 73 214-292 19-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 97.8 5.9E-05 2E-09 60.3 8.2 72 425-510 8-84 (104)
384 1wey_A Calcipressin 1; structu 97.8 6.7E-05 2.3E-09 60.3 7.3 76 216-297 5-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.7 0.00033 1.1E-08 56.0 9.9 74 214-296 6-84 (104)
386 1wey_A Calcipressin 1; structu 97.5 0.00021 7.3E-09 57.4 6.5 74 425-509 5-83 (104)
387 1whv_A Poly(A)-specific ribonu 97.3 0.0008 2.7E-08 53.1 7.5 60 211-279 11-70 (100)
388 1uw4_A UPF3X; nonsense mediate 97.2 0.0018 6E-08 51.3 9.0 77 217-293 2-85 (91)
389 1uw4_A UPF3X; nonsense mediate 97.0 0.0022 7.5E-08 50.7 7.9 69 426-499 2-72 (91)
390 3ctr_A Poly(A)-specific ribonu 96.7 0.0017 5.6E-08 51.5 4.8 54 217-279 7-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 96.7 0.01 3.6E-07 49.1 9.6 77 425-514 24-101 (119)
392 1whv_A Poly(A)-specific ribonu 96.6 0.0061 2.1E-07 48.1 7.1 54 425-487 16-69 (100)
393 1wwh_A Nucleoporin 35, nucleop 96.5 0.0082 2.8E-07 49.7 8.0 74 213-294 21-95 (119)
394 3ctr_A Poly(A)-specific ribonu 96.3 0.006 2.1E-07 48.3 5.7 54 426-488 7-60 (101)
395 2l08_A Regulator of nonsense t 96.3 0.011 3.9E-07 46.9 7.2 78 216-293 9-93 (97)
396 3p3d_A Nucleoporin 53; structu 95.9 0.0057 2E-07 51.3 3.8 79 215-295 6-98 (132)
397 2l08_A Regulator of nonsense t 95.3 0.019 6.3E-07 45.7 4.7 70 425-499 9-80 (97)
398 3p3d_A Nucleoporin 53; structu 94.7 0.041 1.4E-06 46.2 5.2 76 426-508 8-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 93.9 0.025 8.6E-07 58.9 3.0 56 425-486 53-108 (464)
400 3pq1_A Poly(A) RNA polymerase; 92.8 0.048 1.6E-06 56.8 2.8 55 217-277 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 80.5 3.6 0.00012 43.6 8.0 57 214-279 438-494 (507)
402 3d45_A Poly(A)-specific ribonu 75.8 5.7 0.0002 42.1 7.9 55 425-488 440-494 (507)
403 4eyt_A Telomerase associated p 40.0 1.2E+02 0.0041 23.0 7.6 59 213-279 9-67 (129)
404 4e8u_A Putative uncharacterize 31.2 86 0.0029 27.5 5.9 52 426-480 13-75 (172)
405 4e8u_A Putative uncharacterize 26.1 1.2E+02 0.0039 26.7 5.8 57 217-276 13-81 (172)
406 2g0c_A ATP-dependent RNA helic 25.2 36 0.0012 25.1 2.2 33 13-46 42-74 (76)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1e-43 Score=359.37 Aligned_cols=247 Identities=21% Similarity=0.268 Sum_probs=225.0
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
..+++|||+|||+++|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|..|+..|++..+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 83 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---------------DKYKGTAFVTLLNGEQAEAAINAFHQSRLR 83 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---------------ETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---------------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 5678999999999999999999999999 888885 456889999999999999999999999999
Q ss_pred CeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 006726 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (633)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (633)
|+.|.|... ...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|
T Consensus 84 g~~i~v~~~------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 84 ERELSVQLQ------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp TEECEEEEC------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEEEec------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 999999753 34579999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHH
Q 006726 279 NGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIAR 358 (633)
Q Consensus 279 ~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
+|..++|+.|.|.|+.+.....
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~~~---------------------------------------------------------- 179 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQLTP---------------------------------------------------------- 179 (284)
T ss_dssp TTCEETTEECEEEECCGGGCCT----------------------------------------------------------
T ss_pred CCCEeCCcEEEEEECCCCCCCc----------------------------------------------------------
Confidence 9999999999999986532100
Q ss_pred HHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCC-
Q 006726 359 KVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL- 437 (633)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~- 437 (633)
.....++|||+|||+.+
T Consensus 180 --------------------------------------------------------------~~~~~~~l~v~nlp~~~~ 197 (284)
T 3smz_A 180 --------------------------------------------------------------ALLHSRCLCVDRLPPGFN 197 (284)
T ss_dssp --------------------------------------------------------------TTTSCSEEEEECCCTTCC
T ss_pred --------------------------------------------------------------ccCCccEEEEecCCcccC
Confidence 11225799999999995
Q ss_pred CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhh
Q 006726 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (633)
Q Consensus 438 te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~ 513 (633)
|+++|+++|++||.|..++|+.+. +|.++|||||.|.+.++|.+|+..|| |..|+|++|.|.||.++...
T Consensus 198 ~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 198 DVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD-----GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCSSSCH
T ss_pred CHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC-----CCccCCeEEEEEEecCCCcc
Confidence 999999999999999999999886 79999999999999999999999999 99999999999999987653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.7e-43 Score=359.29 Aligned_cols=252 Identities=19% Similarity=0.277 Sum_probs=214.3
Q ss_pred hcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCe
Q 006726 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (633)
Q Consensus 117 ~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~ 196 (633)
..+..++|||+|||+++|+++|+++|+.||.|.+|.++.++. + ++|||||+|.+.++|..|+. +++..
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----------~-~~g~afV~f~~~~~A~~A~~-~~~~~ 104 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK----------K-NFRFARIEFARYDGALAAIT-KTHKV 104 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT----------S-SSEEEEEEESSHHHHHHHHT-TTTCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----------C-CcEEEEEEECCHHHHHHHHH-hCCcE
Confidence 446788999999999999999999999999999999886542 3 47999999999999999995 99999
Q ss_pred ecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 006726 197 IKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (633)
Q Consensus 197 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (633)
+.|+.|.+... ..++|||+|||+.+++++|+++|+.|| .|..|.++.+.. |.++|||||+|.+.++|.+|+
T Consensus 105 ~~g~~i~v~~~-------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~ 176 (292)
T 2ghp_A 105 VGQNEIIVSHL-------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCV 176 (292)
T ss_dssp ETTEECEEEEC-------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHH
T ss_pred eCCcEEEEEEC-------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHH
Confidence 99999999754 467999999999999999999999999 999999998764 789999999999999999999
Q ss_pred HHhCCceeCCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHH
Q 006726 276 QKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVD 355 (633)
Q Consensus 276 ~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (633)
..|||..+.|+.|.|.|+.+.......
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~----------------------------------------------------- 203 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRT----------------------------------------------------- 203 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC-----------------------------------------------------------
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccc-----------------------------------------------------
Confidence 999999999999999999764321000
Q ss_pred HHHHHhhhcccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCC
Q 006726 356 IARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPF 435 (633)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~ 435 (633)
.......++|||+|||+
T Consensus 204 ---------------------------------------------------------------~~~~~~~~~l~v~nlp~ 220 (292)
T 2ghp_A 204 ---------------------------------------------------------------DSATLEGREIMIRNLST 220 (292)
T ss_dssp ------------------------------------------------------------------CCTTTEEEEEEECT
T ss_pred ---------------------------------------------------------------cccCCCCceEEEECCCc
Confidence 00122357999999999
Q ss_pred C-CCHHHHHHHhhhcCceEEEEEeecCC-CCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccCh
Q 006726 436 D-LDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (633)
Q Consensus 436 ~-~te~~L~~~F~~~G~V~~v~i~~d~~-~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (633)
. +|+++|+++|++||.|..|+++.+.. +|.++|||||.|.+.++|.+|+ .|| |..|+|++|.|.||.+|
T Consensus 221 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~-----g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 221 ELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN-----RSLLGNREISVSLADKK 291 (292)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT-----TEEETTEEEEEEECCCC
T ss_pred ccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc-----CCEECCcEEEEEEecCC
Confidence 9 99999999999999999999998876 5999999999999999999999 999 99999999999999876
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.2e-35 Score=300.18 Aligned_cols=210 Identities=17% Similarity=0.191 Sum_probs=191.0
Q ss_pred CccccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcccccccccc
Q 006726 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSS 87 (633)
Q Consensus 8 g~srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (633)
|+++|||||.|.+.++|.+|++.|||..|.|++|+|.++.
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---------------------------------------- 93 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---------------------------------------- 93 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------------------------------
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------------------------------
Confidence 7899999999999999999999999999999999998871
Q ss_pred hhhccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccC
Q 006726 88 KLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167 (633)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~ 167 (633)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.
T Consensus 94 --------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~--------- 132 (284)
T 3smz_A 94 --------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER--------- 132 (284)
T ss_dssp --------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------
T ss_pred --------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC---------
Confidence 124799999999999999999999999999999887653
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCC---CCCCCCCEEEEcCCCCCC-CHHHHHHhhccCCCe
Q 006726 168 EGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE---GSKTQKWKLIIRNIPFKA-KVNEIKDMFSPVGLV 243 (633)
Q Consensus 168 ~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~---~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~G~i 243 (633)
.|.++|||||+|.+.++|..|+..|++..+.|+.|.|...... ......++|||+|||+.+ ++++|+++|+.||.|
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i 212 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP 212 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCe
Confidence 4889999999999999999999999999999999998765432 234567899999999995 999999999999999
Q ss_pred EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCcc
Q 006726 244 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIY 299 (633)
Q Consensus 244 ~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 299 (633)
.++.++.+. +|.++|||||+|.+.++|.+|+..|||..++|++|.|.|+.++...
T Consensus 213 ~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 213 TFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp SEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred EEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 999999875 7999999999999999999999999999999999999999887653
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.8e-35 Score=298.75 Aligned_cols=202 Identities=22% Similarity=0.276 Sum_probs=177.6
Q ss_pred cccEEEEEeccHHHHHHHHHHhCCceeCCeEEEEeeccCCchHHHHhhhcccchhhhhhhhcccCCCCcccccccccchh
Q 006726 10 HRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKL 89 (633)
Q Consensus 10 srG~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (633)
++|||||.|.+.++|.+|++ +||..|.|++|.|.++.
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~------------------------------------------ 116 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT------------------------------------------ 116 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC------------------------------------------
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC------------------------------------------
Confidence 68999999999999999995 89999999999998871
Q ss_pred hccCCCCCCccccccCccccCCcccchhcccCceEEEcCCCccccHHHHHHHHhccC-CeEEEEeeCCchhhhhccccCC
Q 006726 90 LESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIG-TVCSVTYPLPKEELEQHGLAQE 168 (633)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~V~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~~~~~~ 168 (633)
.++|||+|||+.+++++|+++|+.|| .|..+.++.++ .
T Consensus 117 -------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----------~ 155 (292)
T 2ghp_A 117 -------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR----------F 155 (292)
T ss_dssp -------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------------
T ss_pred -------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC----------C
Confidence 24699999999999999999999999 99999987654 3
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCCC-------CCCCCCEEEEcCCCCC-CCHHHHHHhhccC
Q 006726 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEG-------SKTQKWKLIIRNIPFK-AKVNEIKDMFSPV 240 (633)
Q Consensus 169 g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~-------~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~ 240 (633)
|.++|||||+|.+.++|..|+..|++..+.|+.|.|....+.. .....++|||+|||+. +++++|+++|++|
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~ 235 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGF 235 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGG
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhcc
Confidence 7789999999999999999999999999999999997654322 2345689999999999 9999999999999
Q ss_pred CCeEEEEEcccCC-CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 241 GLVWNVYIPHNTD-TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 241 G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
|.|..|.++++.. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 236 G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 236 GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999998765 4899999999999999999999 99999999999999999875
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.4e-33 Score=270.35 Aligned_cols=173 Identities=27% Similarity=0.410 Sum_probs=154.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
..+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.+|+..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCC
Q 006726 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (633)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (633)
+......
T Consensus 92 ~~~~~~~------------------------------------------------------------------------- 98 (213)
T 4f02_A 92 SQRDPSL------------------------------------------------------------------------- 98 (213)
T ss_dssp CCCCTHH-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7543210
Q ss_pred CCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCce
Q 006726 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (633)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V 452 (633)
.....++|||+|||+.+|+++|+++|++||.|
T Consensus 99 ------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 130 (213)
T 4f02_A 99 ------------------------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 130 (213)
T ss_dssp ------------------------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred ------------------------------------------------cccccccceECCcccccHHHHHHHHHhhcCCe
Confidence 00013689999999999999999999999999
Q ss_pred EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhh
Q 006726 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (633)
Q Consensus 453 ~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~ 513 (633)
..|+|+.+. +.++|||||+|.+.++|.+|++.|| |..|+|++|.|.+|.+++..
T Consensus 131 ~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln-----g~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 131 LSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCCHHHH
T ss_pred EEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEcCCCccc
Confidence 999999985 4579999999999999999999999 99999999999999987653
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.3e-32 Score=259.07 Aligned_cols=179 Identities=20% Similarity=0.330 Sum_probs=153.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 455678999999999999999999999999999999999988999999999999999999999986 9999999999999
Q ss_pred EecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCC
Q 006726 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (633)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (633)
++.+.......
T Consensus 88 ~~~~~~~~~~~--------------------------------------------------------------------- 98 (196)
T 1l3k_A 88 RAVSREDSQRP--------------------------------------------------------------------- 98 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCccccccc---------------------------------------------------------------------
Confidence 98654211000
Q ss_pred CCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc
Q 006726 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 451 (633)
......++|||+|||+++|+++|+++|++||.
T Consensus 99 ------------------------------------------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 130 (196)
T 1l3k_A 99 ------------------------------------------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130 (196)
T ss_dssp ----------------------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSC
T ss_pred ------------------------------------------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC
Confidence 01112479999999999999999999999999
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChhhhc
Q 006726 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAH 514 (633)
Q Consensus 452 V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~ 514 (633)
|..|+++.+..+|.++|||||.|.+.++|.+|+.. + |..|+|+.|.|.+|.+++...
T Consensus 131 i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~-----~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K-----YHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S-----CCEETTEECEEEECC------
T ss_pred eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C-----CcEECCEEEEEEecCChhHhc
Confidence 99999999988999999999999999999999976 7 899999999999999886643
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3e-32 Score=252.63 Aligned_cols=165 Identities=27% Similarity=0.491 Sum_probs=153.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46799999999999999999999999999999999988899999999999999999999999999999999999999986
Q ss_pred CCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCC
Q 006726 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (633)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (633)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 5321
Q ss_pred CCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEE
Q 006726 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (633)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~ 454 (633)
....++|||+|||+.+|+++|+++|++||.|..
T Consensus 86 -----------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 86 -----------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp -----------------------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred -----------------------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 111469999999999999999999999999999
Q ss_pred EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC--eEEEEEEc
Q 006726 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKA 507 (633)
Q Consensus 455 v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--r~l~V~~a 507 (633)
+.++.+..+|.++|||||+|.+.++|.+|+..|| |..+.| ++|.|.||
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALN-----NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCEecCCCeEEEEEeC
Confidence 9999998899999999999999999999999999 999988 99999986
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-32 Score=250.14 Aligned_cols=165 Identities=23% Similarity=0.380 Sum_probs=151.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
++|||+|||+++|+++|+++|++||.|.+|.+++++ ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999886 5779999999999999999999999999999999999998553
Q ss_pred CcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCCC
Q 006726 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (633)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (633)
...
T Consensus 80 ~~~----------------------------------------------------------------------------- 82 (166)
T 3md3_A 80 QQS----------------------------------------------------------------------------- 82 (166)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred ccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEE
Q 006726 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (633)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~ 456 (633)
.....++|||+|||+.+|+++|+++|++||.|..+.
T Consensus 83 --------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 83 --------------------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp --------------------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred --------------------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 112257999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEcc
Q 006726 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (633)
Q Consensus 457 i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~ 508 (633)
++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CCccCCcEEEEEecC
Confidence 99998899999999999999999999999999 999999999999985
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.1e-32 Score=250.14 Aligned_cols=164 Identities=27% Similarity=0.487 Sum_probs=152.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.++|||+|||+.+++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred CCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCCC
Q 006726 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (633)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (633)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 321
Q ss_pred CccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEE
Q 006726 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (633)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v 455 (633)
....++|||+|||+.+|+++|+++|++||.|..+
T Consensus 85 ----------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 85 ----------------------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp ----------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred ----------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE
Confidence 0114699999999999999999999999999999
Q ss_pred EEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE--EEEEEc
Q 006726 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ--LTVLKA 507 (633)
Q Consensus 456 ~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~--l~V~~a 507 (633)
+++.+..+|.++|||||+|.+.++|.+|+..|| |..+.|+. |.|.||
T Consensus 119 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 119 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCCCTTCSSCCEEEEC
T ss_pred EEEecCCCCCccceEEEEeCCHHHHHHHHHHhc-----CCccCCCccceEEEeC
Confidence 999998899999999999999999999999999 99999975 888886
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=2.3e-32 Score=253.10 Aligned_cols=165 Identities=21% Similarity=0.423 Sum_probs=151.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
+.++|||+|||+++|+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35799999999999999999999999999999999998899999999999999999999998 4678999999998875
Q ss_pred CCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCC
Q 006726 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (633)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (633)
++..
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 4210
Q ss_pred CCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEE
Q 006726 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (633)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~ 454 (633)
....++|||+|||+++|+++|+++|++||.|..
T Consensus 84 -----------------------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 116 (167)
T 2cjk_A 84 -----------------------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID 116 (167)
T ss_dssp -----------------------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSE
T ss_pred -----------------------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEE
Confidence 001469999999999999999999999999999
Q ss_pred EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccCh
Q 006726 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (633)
Q Consensus 455 v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (633)
++++.+..+|.++|||||+|.+.++|.+|++ ++ |..|+|++|.|.||.+|
T Consensus 117 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-----~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 117 AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK-----FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS-----EECSSSSCEEEEECCCC
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC-----CEEeCCeEEEEeecCCC
Confidence 9999998899999999999999999999997 88 99999999999999876
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.7e-31 Score=255.93 Aligned_cols=180 Identities=25% Similarity=0.395 Sum_probs=154.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||.++|+++|+++|+.||.|.+|.++++..+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35699999999999999999999999999999999988889999999999999999999999999999999999998875
Q ss_pred CCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCCC
Q 006726 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (633)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (633)
....... .......
T Consensus 107 ~~~~~~~------------------------------------------------------~~~~~~~------------ 120 (216)
T 2qfj_A 107 NIGQAQP------------------------------------------------------IIDQLAE------------ 120 (216)
T ss_dssp CCGGGHH------------------------------------------------------HHHHHHH------------
T ss_pred Cccccch------------------------------------------------------hhhhhhc------------
Confidence 4321000 0000000
Q ss_pred CCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEE
Q 006726 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (633)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~ 454 (633)
.....++|||+|||+++|+++|+++|++||.|..
T Consensus 121 ----------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 154 (216)
T 2qfj_A 121 ----------------------------------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS 154 (216)
T ss_dssp ----------------------------------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEE
T ss_pred ----------------------------------------------ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeE
Confidence 1122579999999999999999999999999999
Q ss_pred EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 455 v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
|+++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.+|.++.
T Consensus 155 v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-----g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 155 ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-----LFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCBCSSSBCEEEECSSCS
T ss_pred EEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc-----CCEeCCcEEEEEEecCCC
Confidence 9999998899999999999999999999999999 999999999999998764
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=241.19 Aligned_cols=163 Identities=20% Similarity=0.359 Sum_probs=150.4
Q ss_pred ceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCeE
Q 006726 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (633)
Q Consensus 122 ~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~ 201 (633)
|+|||+|||+++++++|+++|++||.|.++.++.++ .|+++|||||+|.+.++|..|+..+++..+.|+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~----------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK----------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC----------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC----------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 589999999999999999999999999999988664 3778999999999999999999999999999999
Q ss_pred EEEccCCCC--CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 006726 202 VWARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (633)
Q Consensus 202 i~v~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (633)
|.+...... ......++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+..||
T Consensus 71 i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 71 VKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 998765432 345567899999999999999999999999999999999988899999999999999999999999999
Q ss_pred CceeCCeeEEEEEec
Q 006726 280 GQKFGKRPIAVDWAV 294 (633)
Q Consensus 280 g~~~~g~~i~v~~~~ 294 (633)
|..++|++|.|.|+.
T Consensus 151 g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 151 GQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEETTEECEEEESC
T ss_pred CCccCCcEEEEEecC
Confidence 999999999999985
No 13
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.5e-30 Score=241.10 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=154.3
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecC
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g 199 (633)
.+++|||+|||+++++++|+++|++||.|.++.++.++. .|.++|||||+|.+.++|..|+..+++..+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~---------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK---------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT---------TTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCC---------CCccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 357899999999999999999999999999999876543 47889999999999999999999999999999
Q ss_pred eEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 006726 200 GTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (633)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (633)
+.|.|............++|||+|||..+++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|.+|++.||
T Consensus 73 ~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 73 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp EECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 99999887777677788999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CceeCC--eeEEEEEe
Q 006726 280 GQKFGK--RPIAVDWA 293 (633)
Q Consensus 280 g~~~~g--~~i~v~~~ 293 (633)
|..+.| ++|.|.||
T Consensus 153 g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 153 NVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCEecCCCeEEEEEeC
Confidence 999977 99999986
No 14
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.2e-30 Score=251.30 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=150.5
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecC
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g 199 (633)
..+||||+|||+++|+++|+++|++||.|.+|.++.++. .|+++|||||+|.+.++|..|+..+++..+.|
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~---------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI---------TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccC---------CCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 457899999999999999999999999999999987764 48899999999999999999999999999999
Q ss_pred eEEEEccCCCCC--CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 006726 200 GTVWARQLGGEG--SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 200 ~~i~v~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (633)
+.+.+....... ......+|||+|||+.+|+++|+++|+.||.|..|+|+++. +.++|||||+|.+.++|.+|++.
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 85 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp EECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHH
T ss_pred cccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHH
Confidence 999987654322 12345799999999999999999999999999999999874 55899999999999999999999
Q ss_pred hCCceeCCeeEEEEEecCCC
Q 006726 278 FNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 278 l~g~~~~g~~i~v~~~~~~~ 297 (633)
|||..|+|++|.|.|+.++.
T Consensus 163 lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 163 MNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HTTCEETTEECEEEECCCHH
T ss_pred hCCCEECCEEEEEEEcCCCc
Confidence 99999999999999998764
No 15
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.8e-30 Score=238.95 Aligned_cols=164 Identities=26% Similarity=0.335 Sum_probs=153.0
Q ss_pred CceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecCe
Q 006726 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (633)
Q Consensus 121 ~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~ 200 (633)
+++|||+|||+.+++++|+++|+.||.|.++.++.++. .|.++|||||+|.+.++|..|+..|++..+.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~---------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI---------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 57899999999999999999999999999999887653 488899999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 006726 201 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (633)
Q Consensus 201 ~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 280 (633)
.|.|............++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||
T Consensus 73 ~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 73 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp ECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 99998877666667789999999999999999999999999999999999888899999999999999999999999999
Q ss_pred ceeCCee--EEEEEe
Q 006726 281 QKFGKRP--IAVDWA 293 (633)
Q Consensus 281 ~~~~g~~--i~v~~~ 293 (633)
..+.|+. |.|.||
T Consensus 153 ~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 153 QKPSGATEPITVKFA 167 (167)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CccCCCccceEEEeC
Confidence 9999965 888885
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.8e-30 Score=242.32 Aligned_cols=166 Identities=19% Similarity=0.301 Sum_probs=146.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeC---CeeEE
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFG---KRPIA 289 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~ 289 (633)
..++|||+|||+++|+++|+++|++||.|.+|.++++..+| +++|||||+|.+.++|.+|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999988776 89999999999999999999999998875 67777
Q ss_pred EEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCC
Q 006726 290 VDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTG 369 (633)
Q Consensus 290 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (633)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 777643210
Q ss_pred CCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhc
Q 006726 370 SLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF 449 (633)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~ 449 (633)
.....++|||+|||+.+|+++|+++|++|
T Consensus 91 ---------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~ 119 (175)
T 3nmr_A 91 ---------------------------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSF 119 (175)
T ss_dssp ---------------------------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGG
T ss_pred ---------------------------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC
Confidence 01124699999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc---CeEEEEEEcc
Q 006726 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---GRQLTVLKAL 508 (633)
Q Consensus 450 G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~---gr~l~V~~a~ 508 (633)
|.|..++++.+. +|.++|||||+|.+.++|.+|+..|| |..+. |++|.|.||.
T Consensus 120 G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 120 GQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH-----QAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TSCCCTTCSSCCEEEECC
T ss_pred CCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc-----CCcccCCCCCCeEEEecC
Confidence 999999999986 68999999999999999999999999 87766 4999999973
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.4e-31 Score=242.96 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=150.3
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeecC
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g 199 (633)
.+++|||+|||+++|+++|+++|++||.|.++.++.++. .|.++|||||+|.+.++|..|+.. +..+.|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g 70 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPA---------TGRSRGFGFLSFEKPSSVDEVVKT--QHILDG 70 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTT---------TSSCCSCEEEEESSTHHHHHHHHS--CCEETT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCC---------CCCccceEEEEEccHHHHHHHHhc--ccccCC
Confidence 467899999999999999999999999999999887654 488999999999999999999984 678999
Q ss_pred eEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 006726 200 GTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (633)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (633)
+.|.+............++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++ ++
T Consensus 71 ~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 71 KVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp EECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred eEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 99988765544444557799999999999999999999999999999999988889999999999999999999998 89
Q ss_pred CceeCCeeEEEEEecCC
Q 006726 280 GQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 280 g~~~~g~~i~v~~~~~~ 296 (633)
|..++|++|.|.|+.|+
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999999876
No 18
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=7.1e-30 Score=237.55 Aligned_cols=158 Identities=26% Similarity=0.442 Sum_probs=143.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 283 (633)
+.++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.++++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 777777654 5799999999999999999 7999999
Q ss_pred CCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhh
Q 006726 284 GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 363 (633)
Q Consensus 284 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (633)
.|+.|.|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------------------------------- 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------------------------------- 90 (172)
T ss_dssp TTEECEEECCSSCCC-----------------------------------------------------------------
T ss_pred cCceeeecCCcccCC-----------------------------------------------------------------
Confidence 999999998643210
Q ss_pred cccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHH
Q 006726 364 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVK 443 (633)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~ 443 (633)
....++|||+|||+.+|+++|+
T Consensus 91 ----------------------------------------------------------~~~~~~l~v~nlp~~~t~~~l~ 112 (172)
T 2g4b_A 91 ----------------------------------------------------------LPGAHKLFIGGLPNYLNDDQVK 112 (172)
T ss_dssp ----------------------------------------------------------CTTTTCEEEECCCTTCCHHHHH
T ss_pred ----------------------------------------------------------CCCCCEEEEEcCCCcCCHHHHH
Confidence 0114699999999999999999
Q ss_pred HHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEc
Q 006726 444 QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (633)
Q Consensus 444 ~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a 507 (633)
++|++||.|..++++.+..+|.++|||||.|.+.++|.+|+..|| |..|+|++|.|.||
T Consensus 113 ~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 113 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT-----TCEETTEECEEEEC
T ss_pred HHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CCEECCeEEEEEeC
Confidence 999999999999999998899999999999999999999999999 99999999999997
No 19
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.3e-29 Score=241.14 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=148.6
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
...++|||+|||+++|+++|+++|+.||.|.++.++.++. .|.++|||||+|.+.++|..|+.. ++..+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---------TKRSRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT---------TCCEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCC---------CCCccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 5678999999999999999999999999999999987654 478899999999999999999976 999999
Q ss_pred CeEEEEccCCCCC------CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHH
Q 006726 199 GGTVWARQLGGEG------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272 (633)
Q Consensus 199 g~~i~v~~~~~~~------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 272 (633)
|+.|.+....... .....++|||+|||+.+|+++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|.
T Consensus 81 g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp TEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 9999987654321 2234589999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEEecCCCccc
Q 006726 273 SAIQKFNGQKFGKRPIAVDWAVPKNIYS 300 (633)
Q Consensus 273 ~A~~~l~g~~~~g~~i~v~~~~~~~~~~ 300 (633)
+|+.. +|..++|+.|.|.|+.++....
T Consensus 161 ~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 161 KIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HHHHC-SCCEETTEECEEEECC------
T ss_pred HHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 99986 8999999999999998876543
No 20
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.7e-29 Score=244.21 Aligned_cols=171 Identities=14% Similarity=0.237 Sum_probs=153.4
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
..+++|||+|||.++++++|+++|+.||.|.++.++.++. .|.++|||||+|.+.++|..|+..|++..+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~---------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV---------TMKHKGFAFVEYEVPEAAQLALEQMNSVMLG 96 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-C---------C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCC---------CCccCceEEEEeCCHHHHHHHHHHccCCeeC
Confidence 4567999999999999999999999999999999987653 4788999999999999999999999999999
Q ss_pred CeEEEEccCCCCC-----------CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecC
Q 006726 199 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (633)
Q Consensus 199 g~~i~v~~~~~~~-----------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (633)
|+.|.|....... .....++|||+|||..+++++|+++|++||.|..|.++++..+|.++|||||+|.+
T Consensus 97 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 97 GRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp -CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 9999997654322 12456899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEecCCCc
Q 006726 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298 (633)
Q Consensus 268 ~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 298 (633)
.++|.+|+..|||..|+|+.|.|.|+.++..
T Consensus 177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 177 AQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999999999987643
No 21
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.5e-29 Score=239.50 Aligned_cols=182 Identities=24% Similarity=0.373 Sum_probs=147.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 283 (633)
..++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46799999999999999999999999 5 56666553 36899999999999999999 7999999
Q ss_pred CCeeEEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhh
Q 006726 284 GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNK 363 (633)
Q Consensus 284 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (633)
.|+.|.|.++.+.......... . .
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~--------~-~----------------------------------------------- 99 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSEN--------P-S----------------------------------------------- 99 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSC--------S-S-----------------------------------------------
T ss_pred cCceEEEeCCCCCCCCCCCcCC--------C-c-----------------------------------------------
Confidence 9999999998654321100000 0 0
Q ss_pred cccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHH
Q 006726 364 LTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVK 443 (633)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~ 443 (633)
...|. ..........++|||+|||+.+|+++|+
T Consensus 100 -----~~~~~------------------------------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 132 (198)
T 2yh0_A 100 -----VYVPG------------------------------------------VVSTVVPDSAHKLFIGGLPNYLNDDQVK 132 (198)
T ss_dssp -----CCCTT------------------------------------------SSCCCSSCCCCEEEEECCCTTCCHHHHH
T ss_pred -----CCCCC------------------------------------------CccCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 00000 0000022346899999999999999999
Q ss_pred HHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccChh
Q 006726 444 QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 444 ~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (633)
++|++||.|..|+++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|.+|.++.
T Consensus 133 ~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 133 ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN-----GMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT-----TCEETTEECEEEESCCCC
T ss_pred HHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEEEECCCCC
Confidence 999999999999999998899999999999999999999999999 999999999999998763
No 22
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.1e-29 Score=234.32 Aligned_cols=159 Identities=19% Similarity=0.310 Sum_probs=147.2
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhcc----C-------CeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHH
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSI----G-------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACA 187 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~ 187 (633)
+.+++|||+|||+++|+++|+++|++| | .|.++.+ +.++|||||+|.++++|..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~---------------~~~~g~afV~f~~~~~A~~ 66 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------------NQDKNFAFLEFRSVDETTQ 66 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE---------------ETTTTEEEEEESSHHHHHH
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe---------------cCCCCEEEEEeCCHHHHHH
Confidence 456899999999999999999999999 6 6777764 3458999999999999999
Q ss_pred HHHHhCCCeecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecC
Q 006726 188 SVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (633)
Q Consensus 188 A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 267 (633)
|+ .+++..+.|+.|.+............++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|||||+|.+
T Consensus 67 A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp HG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred HH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 99 89999999999999887766666678999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 268 KRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 268 ~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
.++|.+|++.|||..++|++|.|.||
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999999999999999997
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2e-30 Score=241.98 Aligned_cols=166 Identities=22% Similarity=0.334 Sum_probs=145.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|.+|++ |||..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567789999999999999999999999998766 334445578899999999999999999995 99999999999999
Q ss_pred EecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCC
Q 006726 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (633)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (633)
++.++...
T Consensus 87 ~~~~~~~~------------------------------------------------------------------------ 94 (175)
T 1fje_B 87 KPKGRDSK------------------------------------------------------------------------ 94 (175)
T ss_dssp CCCCSSCS------------------------------------------------------------------------
T ss_pred cCCCcccc------------------------------------------------------------------------
Confidence 98654210
Q ss_pred CCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc
Q 006726 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 451 (633)
.....++|||+|||+.+|+++|+++|++||.
T Consensus 95 -------------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~ 125 (175)
T 1fje_B 95 -------------------------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALE 125 (175)
T ss_dssp -------------------------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSE
T ss_pred -------------------------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCe
Confidence 1112479999999999999999999999998
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEEccCh
Q 006726 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (633)
Q Consensus 452 V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (633)
|..+ ..++.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.+|
T Consensus 126 v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 126 IRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT-----EEEETTEEEEEEECSSC
T ss_pred EEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEecCCC
Confidence 8765 4578999999999999999999999999 99999999999999876
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.7e-29 Score=239.29 Aligned_cols=196 Identities=15% Similarity=0.154 Sum_probs=144.5
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 214 TQKWKLIIRNIP-FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 214 ~~~~~l~v~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
.++++|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+||+.|||..+.|+.|.|.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356899999999 89999999999999999999999875 479999999999999999999999999999999999
Q ss_pred ecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCC
Q 006726 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (633)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (633)
+........... . . .+ + ..+ ...-.......|....
T Consensus 77 s~~~~~~p~~~~--~---~----~~-------------~--~~~--~~~~~~~~~~r~~~~~------------------ 112 (205)
T 3tyt_A 77 SKQPAIMPGQSY--G---L----ED-------------G--SCS--YKDFSESRNNRFSTPE------------------ 112 (205)
T ss_dssp CSCSCCCCCSCC--B---C----TT-------------S--CBS--EEECTTCTTCSCSSHH------------------
T ss_pred ccCCccCCCccc--c---c----cc-------------C--Ccc--ccccCCCccccccCcc------------------
Confidence 865432100000 0 0 00 0 000 0000000000000000
Q ss_pred CCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCce
Q 006726 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (633)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V 452 (633)
.........++++|||+|||+++|+++|+++|++||.|
T Consensus 113 ------------------------------------------~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 113 ------------------------------------------QAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ------------------------------------------HHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred ------------------------------------------cccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 00000012336799999999999999999999999999
Q ss_pred --EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe----EEEEEEc
Q 006726 453 --VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR----QLTVLKA 507 (633)
Q Consensus 453 --~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr----~l~V~~a 507 (633)
..++++.+. +.++|||||+|.+.++|.+|+..|| |..|.|+ ++.|.+|
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~ln-----g~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLN-----HYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHT-----TCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhC-----CCCccCCCCCcceEEEec
Confidence 888888774 5567999999999999999999999 9999987 6777765
No 25
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=6.5e-29 Score=231.65 Aligned_cols=167 Identities=23% Similarity=0.301 Sum_probs=144.5
Q ss_pred cCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec-
Q 006726 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK- 198 (633)
Q Consensus 120 ~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~- 198 (633)
.+++|||+|||+++++++|+++|++||.|.++.++.++.+ ..++++|||||+|.+.++|..|+..|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-------~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 74 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ-------NPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP 74 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSS-------SSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC-------CCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc
Confidence 3578999999999999999999999999999998866541 11278999999999999999999999998776
Q ss_pred --CeEEEEccCCCCC-CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 006726 199 --GGTVWARQLGGEG-SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (633)
Q Consensus 199 --g~~i~v~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (633)
++.+.+....... .....++|||+|||+.+|+++|+++|++||.|.++.++++. +|.++|||||+|.+.++|.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 75 GMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp TCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHH
T ss_pred CCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHH
Confidence 4566665443322 23467899999999999999999999999999999999885 6899999999999999999999
Q ss_pred HHhCCceeC---CeeEEEEEec
Q 006726 276 QKFNGQKFG---KRPIAVDWAV 294 (633)
Q Consensus 276 ~~l~g~~~~---g~~i~v~~~~ 294 (633)
+.|||..+. |++|.|.|+.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 999998775 4999999973
No 26
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1.5e-27 Score=240.42 Aligned_cols=269 Identities=15% Similarity=0.216 Sum_probs=153.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 287 (633)
.....++|||+|||+.+|+++|+ ++|+.||.|.+|++++ +|+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568899999999999999976 8999999999999886 6789999999999999999999999999999999
Q ss_pred EEEEEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCc--cccC-CCCCCCccccCCCCCcCchHHHHHHHHHhhhc
Q 006726 288 IAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDD--AETA-SDDSNSSEKEDLPSNADFDEEVDIARKVLNKL 364 (633)
Q Consensus 288 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (633)
|.|.|+.............................+..... ..+. .................... .... .
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~ 154 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQ-----APRI--M 154 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccc-----cccc--c
Confidence 99999976543221111000000000000000000000000 0000 00000000000000000000 0000 0
Q ss_pred ccCCCCCCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHH
Q 006726 365 TSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQ 444 (633)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~ 444 (633)
....|..+........+. .+..... .......+........+ ...........++|||+|||+.+|+++|++
T Consensus 155 ~~~~g~~~~~~~p~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 226 (282)
T 3pgw_A 155 HHMPGQPPYMPPPGMIPP--PGLAPGQ-----IPPGAMPPQQLMPGQMP-PAQPLSENPPNHILFLTNLPEETNELMLSM 226 (282)
T ss_pred ccCCCCCCCCCCCCCCCC--CCCCccc-----cCcccCcccccCccccC-ccCCccCCCCCCEEEEeCCCCcCCHHHHHH
Confidence 000000000000000000 0000000 00000000000000000 000112344578999999999999999999
Q ss_pred HhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc-CeEEEEEEcc
Q 006726 445 RFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKAL 508 (633)
Q Consensus 445 ~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~-gr~l~V~~a~ 508 (633)
+|++||.|.+|+++.+. +|||||+|.+.++|.+|+..|| |..|+ |+.|+|.||+
T Consensus 227 ~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 227 LFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ-----GFKITQNNAMKISFAK 281 (282)
T ss_pred HHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC-----CcEeCCCCEEEEEEec
Confidence 99999999999988553 6899999999999999999999 99999 9999999985
No 27
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=3.8e-28 Score=231.35 Aligned_cols=163 Identities=19% Similarity=0.302 Sum_probs=144.7
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhcc----C-------CeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHH
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSI----G-------TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACA 187 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~ 187 (633)
+.+++|||+|||+++++++|+++|++| | .|.++.+ +.++|||||+|.+.++|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------------~~~~g~afV~F~~~~~A~~ 66 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------------NQDKNFAFLEFRSVDETTQ 66 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------------ETTTTEEEEEESCSHHHHH
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------------cCCCCEEEEEeCCHHHHHH
Confidence 357899999999999999999999999 5 5555553 4568999999999999999
Q ss_pred HHHHhCCCeecCeEEEEccCCCCC--------------------CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEE
Q 006726 188 SVALLHQKEIKGGTVWARQLGGEG--------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVY 247 (633)
Q Consensus 188 A~~~l~~~~~~g~~i~v~~~~~~~--------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~ 247 (633)
|+ .|++..+.|+.|.|....... .....++|||+|||+.+++++|+++|++||.|..+.
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 145 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 145 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEE
T ss_pred HH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEE
Confidence 99 899999999999997543221 124568999999999999999999999999999999
Q ss_pred EcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 248 IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 248 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
++++..+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|+.++.
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99988899999999999999999999999999999999999999998764
No 28
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=3.6e-28 Score=236.84 Aligned_cols=196 Identities=20% Similarity=0.214 Sum_probs=149.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
...+.++|||+|||+ .+++++|+++|+.||.|.+|.++++. +|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998863 789999999999999999999999999999999
Q ss_pred EEecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCC
Q 006726 291 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 370 (633)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (633)
.|+.+............. .. ...+..
T Consensus 105 ~~a~~~~~~~~~~~~~~~---------------~~---------------------~~~~~~------------------ 130 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQ---------------GL---------------------TKDYGN------------------ 130 (229)
T ss_dssp ECCSCCCCCCCCSSSSTT---------------TT---------------------EEECTT------------------
T ss_pred EEecCccccCcccccccc---------------cc---------------------cccccc------------------
Confidence 999765432111000000 00 000000
Q ss_pred CCCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcC
Q 006726 371 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 450 (633)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G 450 (633)
....+...+..........+.++|||+|||+.+|+++|+++|++||
T Consensus 131 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 131 ----------------------------------SPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp ----------------------------------CSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred ----------------------------------CcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 0000000000000001223468999999999999999999999999
Q ss_pred -ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc-CeEEEEEEccCh
Q 006726 451 -EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKALDK 510 (633)
Q Consensus 451 -~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~-gr~l~V~~a~~k 510 (633)
.|..|+++.+ .+|||||+|.+.++|.+|+..|| |..++ |++|.|.||.++
T Consensus 177 ~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 177 GVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT-----TCBSSSSCBCEEEECSSC
T ss_pred CCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC-----CCccCCCCeEEEEEecCC
Confidence 9999988653 37899999999999999999999 99999 999999998763
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=3e-28 Score=232.13 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=146.9
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 215 QKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 215 ~~~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
..++|||+|||+ .+++++|+++|+.||.|.+|.++++. +|||||+|.+.++|.+|+..|||..+.|+.|.|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998863 789999999999999999999999999999999999
Q ss_pred cCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCCCC
Q 006726 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (633)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (633)
.+............. + ....+.. .
T Consensus 77 ~~~~~~~~~~~~~~~----------------------~--------------~~~~~~~------------------~-- 100 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQ----------------------G--------------LTKDYGN------------------S-- 100 (198)
T ss_dssp CCCSCCCSSSSSSSS----------------------S--------------CEEESSC------------------C--
T ss_pred cCCCcCCCCcCCccc----------------------c--------------ccccccC------------------C--
Confidence 765432111000000 0 0000000 0
Q ss_pred CCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcC-ce
Q 006726 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG-EV 452 (633)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V 452 (633)
...+...+..........+.++|||+|||+.+|+++|+++|++|| .|
T Consensus 101 --------------------------------~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v 148 (198)
T 1qm9_A 101 --------------------------------PLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 148 (198)
T ss_dssp --------------------------------CTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC
T ss_pred --------------------------------chhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc
Confidence 000000000000001223468999999999999999999999999 99
Q ss_pred EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc-CeEEEEEEccCh
Q 006726 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKALDK 510 (633)
Q Consensus 453 ~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~-gr~l~V~~a~~k 510 (633)
..++++.+ .+|+|||+|.+.++|.+|+..|| |..++ |++|.|.|+.++
T Consensus 149 ~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 149 KGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH-----NHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEESST-----TSSCEEEECSSHHHHHHHHHHHT-----SSCCSSCCSCCEEEECCC
T ss_pred eEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhc-----CCccCCCCeEEEEeeccc
Confidence 99988654 37999999999999999999999 99999 999999998763
No 30
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=5.7e-28 Score=240.20 Aligned_cols=161 Identities=27% Similarity=0.430 Sum_probs=146.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+++|+++|+++|+.||.|..|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 445668999999999999999999999999999999865 46999999999999999999999999999999999
Q ss_pred EecCCCcccCCCccccccCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCCCcCchHHHHHHHHHhhhcccCCCCC
Q 006726 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (633)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (633)
|+.+
T Consensus 92 ~a~~---------------------------------------------------------------------------- 95 (261)
T 3sde_A 92 FATH---------------------------------------------------------------------------- 95 (261)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred eccc----------------------------------------------------------------------------
Confidence 9742
Q ss_pred CCCCCccccccCCCCCCcchhhhcccccccccccccCCCCCCCcccCCCCCCCCcEEEecCCCCCCCHHHHHHHhhhcCc
Q 006726 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (633)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 451 (633)
+++|||+|||+.+|+++|+++|++||.
T Consensus 96 -----------------------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 96 -----------------------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp -----------------------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred -----------------------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 359999999999999999999999999
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc---CeEEEEEEccChhh
Q 006726 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK---GRQLTVLKALDKKL 512 (633)
Q Consensus 452 V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~---gr~l~V~~a~~k~~ 512 (633)
|..|.++.+ .+|.++|||||+|.+.++|.+|+..||+ +..+. |++|.|.++.+...
T Consensus 123 i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~----~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 123 VEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGD----GAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHH----SCEESSSSCCBCEEEECCCEES
T ss_pred eEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcC----CeEEecCCCceEEEeeccccCc
Confidence 999999999 5899999999999999999999999951 56665 99999999987643
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=2.1e-28 Score=228.36 Aligned_cols=163 Identities=17% Similarity=0.277 Sum_probs=142.0
Q ss_pred cccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCee
Q 006726 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (633)
Q Consensus 118 ~~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (633)
+...++|||+|||.++++++|+++|+.||.+..+. +.+. ..|.++|||||+|.+.++|..|+ .|++..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~-~~~~---------~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 78 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLA-VVDV---------RTGTNRKFGYVDFESAEDLEKAL-ELTGLKV 78 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCC-CCEE---------EEETTTTEEEEEESSHHHHHHHH-HGGGEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEE-EEEC---------CCCccccEEEEEECCHHHHHHHH-hcCCCEe
Confidence 45678999999999999999999999999776622 2222 34788999999999999999999 5999999
Q ss_pred cCeEEEEccCCCCC--CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 006726 198 KGGTVWARQLGGEG--SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (633)
Q Consensus 198 ~g~~i~v~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 275 (633)
.|+.|.|....... .....++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+
T Consensus 79 ~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 79 FGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHH
T ss_pred CCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHH
Confidence 99999998765332 33456899999999999999999999999988765 357889999999999999999999
Q ss_pred HHhCCceeCCeeEEEEEecCC
Q 006726 276 QKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 276 ~~l~g~~~~g~~i~v~~~~~~ 296 (633)
..|||..++|+.|.|.|+.++
T Consensus 154 ~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHTEEEETTEEEEEEECSSC
T ss_pred HHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999875
No 32
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=2e-27 Score=226.29 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=137.0
Q ss_pred cCceEEEcCCC-ccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 120 VARTVIIGGLL-NADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 120 ~~~tl~V~nlp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
.+++|||+||| ..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|..|+..|||..+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------------~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------------KPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------------STTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------------CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46789999999 79999999999999999999998632 3689999999999999999999999999
Q ss_pred CeEEEEccCCCCC-------------------------------------CCCCCCEEEEcCCCCCCCHHHHHHhhccCC
Q 006726 199 GGTVWARQLGGEG-------------------------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 241 (633)
Q Consensus 199 g~~i~v~~~~~~~-------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G 241 (633)
|+.|.|..+.... ...+.++|||+|||+.+|+++|+++|++||
T Consensus 69 g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G 148 (205)
T 3tyt_A 69 GQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG 148 (205)
T ss_dssp TEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT
T ss_pred CceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC
Confidence 9999987432110 012356899999999999999999999999
Q ss_pred Ce--EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe----eEEEEEe
Q 006726 242 LV--WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR----PIAVDWA 293 (633)
Q Consensus 242 ~i--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~i~v~~~ 293 (633)
.| .+++++.+. +.++|||||+|.+.++|.+||..|||..|.|. ++.|.|+
T Consensus 149 ~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 149 VKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 98 899998764 55679999999999999999999999999876 6777765
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.8e-26 Score=224.82 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=140.8
Q ss_pred ccCceEEEcCCCc-cccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCee
Q 006726 119 RVARTVIIGGLLN-ADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (633)
Q Consensus 119 ~~~~tl~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~ 197 (633)
..+++|||+|||+ .+++++|+++|++||.|.++.++.++ +|||||+|.+.++|..|+..|++..+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------------~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------------KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------------SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------------CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 4678999999999 99999999999999999999986432 68999999999999999999999999
Q ss_pred cCeEEEEccCCCCC-----------------------------------CCCCCCEEEEcCCCCCCCHHHHHHhhccCC-
Q 006726 198 KGGTVWARQLGGEG-----------------------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVG- 241 (633)
Q Consensus 198 ~g~~i~v~~~~~~~-----------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G- 241 (633)
.|+.|.|....... ...+.++|||+|||..+++++|+++|++||
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~ 177 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGG 177 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSC
T ss_pred CCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCC
Confidence 99999986443210 012368999999999999999999999999
Q ss_pred CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEecCC
Q 006726 242 LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPK 296 (633)
Q Consensus 242 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~~~ 296 (633)
.|..|.++.+ ++|||||+|.+.++|.+|+..|||..+. |+.|.|.|+.++
T Consensus 178 ~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 178 VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999653 4689999999999999999999999999 999999999763
No 34
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=2.3e-26 Score=231.75 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=140.8
Q ss_pred ccCceEEEcCCCccccHHHHH----HHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCC
Q 006726 119 RVARTVIIGGLLNADMAEEVH----RLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ 194 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~ 194 (633)
..+++|||+|||.++++++|+ ++|+.||.|.+|.++ +.|+++|||||+|.+.++|..|+..||+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~------------~~~~~~g~afV~f~~~~~a~~A~~~l~g 74 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS------------RSLKMRGQAFVIFKEVSSATNALRSMQG 74 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc------------CCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 457899999999999999966 899999999999976 3478899999999999999999999999
Q ss_pred CeecCeEEEEccCCCCC---------------------------------------------------------------
Q 006726 195 KEIKGGTVWARQLGGEG--------------------------------------------------------------- 211 (633)
Q Consensus 195 ~~~~g~~i~v~~~~~~~--------------------------------------------------------------- 211 (633)
..|.|+.|.|.......
T Consensus 75 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 3pgw_A 75 FPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM 154 (282)
T ss_pred CeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc
Confidence 99999999885322111
Q ss_pred ------------------------------------------------CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCe
Q 006726 212 ------------------------------------------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV 243 (633)
Q Consensus 212 ------------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i 243 (633)
.....++|||+|||..+++++|+++|+.||.|
T Consensus 155 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF 234 (282)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe
Confidence 11245789999999999999999999999999
Q ss_pred EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEec
Q 006726 244 WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAV 294 (633)
Q Consensus 244 ~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~ 294 (633)
.+|.++.+ .+|||||+|.+.++|.+|++.|||..+. |+.|+|.|++
T Consensus 235 ~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 235 KEVRLVPG-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEecC-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999864 2589999999999999999999999999 9999999985
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1e-26 Score=221.50 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=139.6
Q ss_pred cCceEEEcCCCc-cccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 120 VARTVIIGGLLN-ADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 120 ~~~tl~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
.+++|||+|||+ .+++++|+++|++||.|.++.++.++ +|||||+|.+.++|..|+..|++..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------------~g~afV~f~~~~~a~~A~~~l~~~~~~ 67 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------------KENALVQMADGNQAQLAMSHLNGHKLH 67 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------------SSCCEEECTTTHHHHHHHHHHTTCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------------CCEEEEEECCHHHHHHHHHHhCCCeec
Confidence 357899999999 99999999999999999999976431 679999999999999999999999999
Q ss_pred CeEEEEccCCCC-----------------------------------CCCCCCCEEEEcCCCCCCCHHHHHHhhccCC-C
Q 006726 199 GGTVWARQLGGE-----------------------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG-L 242 (633)
Q Consensus 199 g~~i~v~~~~~~-----------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~ 242 (633)
|+.|.|...... ....+.++|||+|||..+++++|+++|++|| .
T Consensus 68 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~ 147 (198)
T 1qm9_A 68 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 147 (198)
T ss_dssp SCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC
T ss_pred CeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC
Confidence 999988643211 0013478999999999999999999999999 9
Q ss_pred eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEEecCC
Q 006726 243 VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPK 296 (633)
Q Consensus 243 i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~~~ 296 (633)
|..+.++.+ .+|||||+|.+.++|.+|+..|||..++ |+.|.|.|+.++
T Consensus 148 v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 148 VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999764 4789999999999999999999999999 999999999763
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=2.8e-26 Score=227.97 Aligned_cols=157 Identities=20% Similarity=0.206 Sum_probs=142.8
Q ss_pred ccCceEEEcCCCccccHHHHHHHHhccCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCCeec
Q 006726 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (633)
Q Consensus 119 ~~~~tl~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~~~~~~ 198 (633)
...++|||+|||+++|+++|+++|+.||.|.+|.+. +++|||||+|.+.++|..|+..+++..+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------------~~kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------------RDRGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------------TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------------CCCcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 456789999999999999999999999999999964 34789999999999999999999999999
Q ss_pred CeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 006726 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (633)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 278 (633)
|+.|.|.... ..++|||+|||+.+|+++|+++|+.||.|..|.++.+ .+|.++|||||+|.+.++|.+|+..|
T Consensus 85 g~~l~v~~a~------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 85 SRPLRIRFAT------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp TEECEEEECC------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CceeEeeecc------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 9999998654 4579999999999999999999999999999999998 58999999999999999999999999
Q ss_pred C-CceeC---CeeEEEEEecCCC
Q 006726 279 N-GQKFG---KRPIAVDWAVPKN 297 (633)
Q Consensus 279 ~-g~~~~---g~~i~v~~~~~~~ 297 (633)
| |..+. +++|.|.++.+..
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEE
T ss_pred cCCeEEecCCCceEEEeeccccC
Confidence 4 55554 9999999997643
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=1e-21 Score=179.53 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=78.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..|+++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|.|
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v 144 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELRV 144 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST-----TEESSSSEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 5799999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccChh
Q 006726 505 LKALDKK 511 (633)
Q Consensus 505 ~~a~~k~ 511 (633)
.+|.++.
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998753
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=9.6e-22 Score=168.98 Aligned_cols=80 Identities=36% Similarity=0.561 Sum_probs=75.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|| |..|+|++|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~-----~~~~~g~~i~V 77 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFV 77 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcC-----CCEECCEEEEE
Confidence 4689999999999999999999999999999999985 4579999999999999999999999 99999999999
Q ss_pred EEccChh
Q 006726 505 LKALDKK 511 (633)
Q Consensus 505 ~~a~~k~ 511 (633)
.++.++.
T Consensus 78 ~~a~~~~ 84 (115)
T 4f25_A 78 GRFKSRK 84 (115)
T ss_dssp EESSCCC
T ss_pred EECCCcc
Confidence 9998654
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.1e-20 Score=172.47 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=107.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEcc-------------CCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 006726 169 GCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQ-------------LGGEGSKTQKWKLIIRNIPFKAKVNEIKD 235 (633)
Q Consensus 169 g~~~g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~-------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 235 (633)
..++|||||+|.+.++|.+|+..+++....+..+.+.. ..........++|||+|||+.+++++|++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 35789999999999999999988875332222222110 01112334578999999999999999999
Q ss_pred hhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 236 ~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
+|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|++|.|.|+.++.
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999998899999999999999999999999999999999999999998754
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1e-20 Score=162.52 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+.+|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999874 4589999999999999999999999999999999999987
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=156.02 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=78.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
.+++|||+|||+++|+++|+++|++||.|.+|++++|+.+|.++|||||+|.++++|.+|++.|| |..|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~~~gr~l~ 92 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-----GLRLQSKTIK 92 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-----CCEECCEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccC
Q 006726 504 VLKALD 509 (633)
Q Consensus 504 V~~a~~ 509 (633)
|.||+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999975
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.1e-20 Score=170.82 Aligned_cols=77 Identities=23% Similarity=0.351 Sum_probs=72.8
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+++|+++|+++|++||.|..|+++.+ ++|||||+|.+.++|.+|+..|| |..|+|++|+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 141 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELD-----GRTLCGCRVR 141 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHS-----SSCSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEEE
Confidence 4689999999999999999999999999999999876 58999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 006726 504 VLKALDK 510 (633)
Q Consensus 504 V~~a~~k 510 (633)
|.+|.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999875
No 43
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=6.2e-20 Score=165.88 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=109.7
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHh-CCCeecCeEEEEccCCC----------------CCCCCCCCEEEEcCCCCCCCHH
Q 006726 169 GCKMDASAVLYTTVKSACASVALL-HQKEIKGGTVWARQLGG----------------EGSKTQKWKLIIRNIPFKAKVN 231 (633)
Q Consensus 169 g~~~g~afV~F~~~~~A~~A~~~l-~~~~~~g~~i~v~~~~~----------------~~~~~~~~~l~v~nlp~~~t~~ 231 (633)
..-+|+++|+|.+.++|.+|+..+ |+..+.| .+.+..... .......++|||+|||+.+|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 345799999999999999999999 9999999 888765432 2234567899999999999999
Q ss_pred HHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 232 EIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 232 ~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
+|+++|++||.|.+|.++++ ++|||||+|.+.++|.+|+..|||..+.|++|.|.|+.++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999875 68999999999999999999999999999999999997753
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=150.29 Aligned_cols=83 Identities=30% Similarity=0.526 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
..++++|||+|||+++|+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 006726 293 AVP 295 (633)
Q Consensus 293 ~~~ 295 (633)
|.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=150.63 Aligned_cols=83 Identities=14% Similarity=0.316 Sum_probs=76.9
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcC-ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+|.++|||||+|.+.++|.+|++.++. +..|+||+|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~----~~~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH----SLNILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT----EEEETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC----CeEECCEEEEE
Confidence 5899999999999999999999999 899999999999999999999999999999999998741 67899999999
Q ss_pred EEccChhh
Q 006726 505 LKALDKKL 512 (633)
Q Consensus 505 ~~a~~k~~ 512 (633)
.+|.+++.
T Consensus 78 ~~a~~~~~ 85 (91)
T 2lxi_A 78 HYSDPKPK 85 (91)
T ss_dssp ECCCSCCC
T ss_pred EEcCCCCC
Confidence 99987643
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=150.19 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=80.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
+.++|||+|||+++|+++|+++|++||.|.+|+|++|..+++++|||||+|.+.++|.+|++.|| |..|+|++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln-----g~~~~gr~i~ 79 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH-----LTSVMGNIIH 79 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCEECCeEEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccChhh
Q 006726 504 VLKALDKKL 512 (633)
Q Consensus 504 V~~a~~k~~ 512 (633)
|.+|..+..
T Consensus 80 V~~a~~~~~ 88 (110)
T 3s8s_A 80 AQLDIKGQQ 88 (110)
T ss_dssp EEECSTTHH
T ss_pred EEECCCCcH
Confidence 999976654
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=145.67 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=74.9
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCc--eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCe----EEc
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI----FLK 498 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~--V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~----~l~ 498 (633)
-.+|||+|||+.+|+++|+++|++||. |.+|++++|+.+|.++|||||+|.+.++|.+|++.|| |. .|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln-----g~~~~~~i~ 83 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ-----SLHPPLKID 83 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH-----SSSSCEEET
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc-----CCCCCceEC
Confidence 469999999999999999999999995 6789999999999999999999999999999999999 64 799
Q ss_pred CeEEEEEEccC
Q 006726 499 GRQLTVLKALD 509 (633)
Q Consensus 499 gr~l~V~~a~~ 509 (633)
||+|.|.||++
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999874
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=140.33 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=77.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+++|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|+..|| |..++|++|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeEEE
Confidence 36899999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 006726 504 VLKALDK 510 (633)
Q Consensus 504 V~~a~~k 510 (633)
|.||.++
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999865
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.5e-18 Score=138.48 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=78.1
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
++|||+|||+++|+++|+++|++||.|..+.++.+..+|.++|||||.|.+.++|.+|+..|| |..++|++|+|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ-----GQDLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT-----TCEETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc-----CCeeCCcEEEEE
Confidence 689999999999999999999999999999999998899999999999999999999999999 999999999999
Q ss_pred EccChh
Q 006726 506 KALDKK 511 (633)
Q Consensus 506 ~a~~k~ 511 (633)
+|.+++
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 998753
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-19 Score=143.49 Aligned_cols=83 Identities=23% Similarity=0.392 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC-CceeCCeeEEEEEe
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN-GQKFGKRPIAVDWA 293 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~i~v~~~ 293 (633)
+.+|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.++ +..++|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999999874 56799999999999
Q ss_pred cCCCc
Q 006726 294 VPKNI 298 (633)
Q Consensus 294 ~~~~~ 298 (633)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 51
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=5.3e-19 Score=147.65 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=79.7
Q ss_pred CcEEEecCCCC------CCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 425 QNTIFICNLPF------DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 425 ~~~lfV~nLp~------~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
+++|||+|||+ ++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..|| |..|+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-----g~~~~ 80 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH-----GKRLD 80 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCBSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC-----CcccC
Confidence 68999999999 99999999999999999999999999999999999999999999999999999 99999
Q ss_pred C-eEEEEEEccChhh
Q 006726 499 G-RQLTVLKALDKKL 512 (633)
Q Consensus 499 g-r~l~V~~a~~k~~ 512 (633)
| ++|.|.+|.+++.
T Consensus 81 g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 81 LKHRLFLYTMKDVER 95 (100)
T ss_dssp SSCBCEEEESHHHHH
T ss_pred CCeEEEEEECchhhh
Confidence 9 9999999987654
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=8.1e-18 Score=142.66 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
.+.++|||+|||+.+++++|+++|++||.|.+|.|++++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 006726 294 VPKN 297 (633)
Q Consensus 294 ~~~~ 297 (633)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=4.9e-18 Score=137.38 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=77.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEcc
Q 006726 503 TVLKAL 508 (633)
Q Consensus 503 ~V~~a~ 508 (633)
+|.||+
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999974
No 54
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=138.41 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=78.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 86 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGRR 86 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCEE
Confidence 4457899999999999999999999999999999999999899999999999999999999999999 99999999
Q ss_pred EEEEEccC
Q 006726 502 LTVLKALD 509 (633)
Q Consensus 502 l~V~~a~~ 509 (633)
|+|.+|.+
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999864
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=140.69 Aligned_cols=85 Identities=31% Similarity=0.480 Sum_probs=80.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD-----GQVFQGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT-----TEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
.|.+|.++..
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9999987654
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=139.37 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+.+|+++|+++|++||.|..|+++.+. +|.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 86 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD-----GMTIKEN 86 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TEESSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34456899999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.+|.++.
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 57
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.2e-18 Score=153.81 Aligned_cols=123 Identities=24% Similarity=0.311 Sum_probs=83.6
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCeecCeEEEEccCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC
Q 006726 174 ASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD 253 (633)
Q Consensus 174 ~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 253 (633)
++|++|++...+..|+..+++....|+... ....+.......++|||+|||+.+|+++|+++|+.||.|..|.++.++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp -----------------------------C-CSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-CcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 578888999999999999988766655322 2233334556678999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 254 TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 254 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+..
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999998754
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=6.9e-18 Score=139.89 Aligned_cols=84 Identities=23% Similarity=0.440 Sum_probs=80.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+.+++++|+++|++||.|..|+++.+..+|.++|||||+|.+.++|.+|++.|| |..|+|+.|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN-----GYQLGSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEE
Confidence 5799999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccChhhh
Q 006726 505 LKALDKKLA 513 (633)
Q Consensus 505 ~~a~~k~~~ 513 (633)
.+|.++...
T Consensus 77 ~~a~~~~~~ 85 (96)
T 2x1f_A 77 GYSSNSDIS 85 (96)
T ss_dssp EECSCSSGG
T ss_pred EEcCCCCCC
Confidence 999987643
No 59
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=139.74 Aligned_cols=83 Identities=29% Similarity=0.428 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC--eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL--VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ----KFGKR 286 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~ 286 (633)
...-.+|||+|||+.+|+++|+++|++||. |.+|++++++.+|+++|||||+|.+.++|.+|++.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345569999999999999999999999995 678999999999999999999999999999999999997 58999
Q ss_pred eEEEEEecC
Q 006726 287 PIAVDWAVP 295 (633)
Q Consensus 287 ~i~v~~~~~ 295 (633)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=137.80 Aligned_cols=82 Identities=28% Similarity=0.482 Sum_probs=77.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|++.|| |..|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 87 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN-----NKQLFGRV 87 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT-----TEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC-----CCeeCCcE
Confidence 3446899999999999999999999999999999999999899999999999999999999999999 99999999
Q ss_pred EEEEEcc
Q 006726 502 LTVLKAL 508 (633)
Q Consensus 502 l~V~~a~ 508 (633)
|+|.||+
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1.1e-17 Score=143.74 Aligned_cols=87 Identities=26% Similarity=0.391 Sum_probs=81.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+++|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 95 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN-----GFQIGMK 95 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34456899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccChhh
Q 006726 501 QLTVLKALDKKL 512 (633)
Q Consensus 501 ~l~V~~a~~k~~ 512 (633)
+|+|.|+.++..
T Consensus 96 ~l~V~~a~~~~~ 107 (115)
T 2cpz_A 96 RLKVQLKRSKND 107 (115)
T ss_dssp ECEEECCCCSCC
T ss_pred EEEEEEcCCCCc
Confidence 999999987643
No 62
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=142.82 Aligned_cols=85 Identities=25% Similarity=0.458 Sum_probs=80.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+.+|+++|+++|++||.|..|+++.+..+|.++|||||.|.+.++|.+|++.|| |..|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~-----g~~i~g~ 96 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN-----GFELAGR 96 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT-----TCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34456899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccCh
Q 006726 501 QLTVLKALDK 510 (633)
Q Consensus 501 ~l~V~~a~~k 510 (633)
+|.|.+|.++
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999999875
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=140.82 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=80.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 86 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS-----GFGYDHLI 86 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC-----CCeeCCcE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=2.3e-17 Score=141.76 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=81.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 85 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG-----GQWLGGR 85 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TCEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccChhh
Q 006726 501 QLTVLKALDKKL 512 (633)
Q Consensus 501 ~l~V~~a~~k~~ 512 (633)
.|+|.||.++..
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987654
No 65
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=2e-17 Score=133.16 Aligned_cols=81 Identities=23% Similarity=0.535 Sum_probs=77.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
++|||+|||+.+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++|++|.|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999875
Q ss_pred C
Q 006726 297 N 297 (633)
Q Consensus 297 ~ 297 (633)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=141.45 Aligned_cols=86 Identities=26% Similarity=0.297 Sum_probs=80.9
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+.+|+++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 85 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD-----MIKLYGK 85 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS-----SCBCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC-----CCeECCe
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.+|.++.
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 67
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=1.1e-18 Score=154.04 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=78.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|.|
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~-----g~~i~g~~l~V 121 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD-----GAVLDGRELRV 121 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT-----TCCSSSSCCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCEEEEE
Confidence 5799999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccChh
Q 006726 505 LKALDKK 511 (633)
Q Consensus 505 ~~a~~k~ 511 (633)
.||.++.
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998653
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.7e-18 Score=139.05 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=79.3
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+++|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN-----GFELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT-----TCCSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC-----CCeeCCcEEE
Confidence 36899999999999999999999999999999999999899999999999999999999999999 9999999999
Q ss_pred EEEccChh
Q 006726 504 VLKALDKK 511 (633)
Q Consensus 504 V~~a~~k~ 511 (633)
|.+|.++.
T Consensus 79 V~~a~~~~ 86 (95)
T 2dnz_A 79 VGHVTERL 86 (95)
T ss_dssp EEESSCCC
T ss_pred EEEccccc
Confidence 99998764
No 69
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=134.82 Aligned_cols=83 Identities=33% Similarity=0.575 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred cCC
Q 006726 294 VPK 296 (633)
Q Consensus 294 ~~~ 296 (633)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=139.43 Aligned_cols=83 Identities=33% Similarity=0.471 Sum_probs=79.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEE-EEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
+++|||+|||+.+|+++|+++|++||.|..+ +++.++.++.++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~ 79 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN-----GQYLCNRPIT 79 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT-----TCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCEEEE
Confidence 6899999999999999999999999999999 999998899999999999999999999999999 9999999999
Q ss_pred EEEccChhh
Q 006726 504 VLKALDKKL 512 (633)
Q Consensus 504 V~~a~~k~~ 512 (633)
|.+|.++..
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999987643
No 71
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=139.10 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=78.4
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCC
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~ 492 (633)
.....++|||+|||+++|+++|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|++.||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~---- 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD---- 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC----
Confidence 3445789999999999999999999999999999 9999999899999999999999999999999999
Q ss_pred CCeEEcCeEEEEEEcc
Q 006726 493 LGIFLKGRQLTVLKAL 508 (633)
Q Consensus 493 ~g~~l~gr~l~V~~a~ 508 (633)
|..|+|++|+|.+|.
T Consensus 85 -g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 -GKEFSGNPIKVSFAT 99 (99)
T ss_dssp -TCBSSSSBCEEEECC
T ss_pred -CCEeCCcEEEEEecC
Confidence 999999999999974
No 72
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=140.64 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=80.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+.+|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|++.|| |..|+|++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT-----TEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
.|.+|.++..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2cqb_A 85 RVNLAKPMRI 94 (102)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987643
No 73
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-18 Score=142.36 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=76.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+.. |.++|||||+|.+.++|.+|+. ++ |..|+|+.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~-----~~~~~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TP-----GQKYKETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SS-----CCCCTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cC-----CCEECCEEE
Confidence 3468999999999999999999999999999999999987 9999999999999999999998 89 999999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
.|.++...
T Consensus 82 ~V~~~~~~ 89 (103)
T 1s79_A 82 LILFKDDY 89 (103)
T ss_dssp EEEEHHHH
T ss_pred EEEEchHH
Confidence 99997754
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=139.40 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=79.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ || +..|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~-----~~~~~g~~ 80 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH-----FHDIMGKK 80 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC-----CCBSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC-----CCEECCeE
Confidence 3446899999999999999999999999999999999999899999999999999999999998 99 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 81 l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 VEVKRAEPRDS 91 (99)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987643
No 75
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.72 E-value=2.2e-18 Score=141.04 Aligned_cols=82 Identities=12% Similarity=0.196 Sum_probs=72.9
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcC--ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|.+|++.|| |..|+|++|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~i~ 76 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-----KRELHGQNPV 76 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG-----GSCSSSCCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC-----CCeeCCEEEE
Confidence 4899999999999999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred EEEccChhh
Q 006726 504 VLKALDKKL 512 (633)
Q Consensus 504 V~~a~~k~~ 512 (633)
|.++.+...
T Consensus 77 V~~~~~~~~ 85 (90)
T 3p5t_L 77 VTPSNKLEH 85 (90)
T ss_dssp ECCC-----
T ss_pred EEECCCCcc
Confidence 999987543
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.4e-18 Score=139.67 Aligned_cols=83 Identities=25% Similarity=0.333 Sum_probs=73.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
...+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.|+.. +..|.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~---~~~l~Gr 82 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV---TPVLRGQ 82 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTS---CCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccC---CceECCE
Confidence 3445789999999999999999999999999999998864 799999999999999999988611 4799999
Q ss_pred EEEEEEccChhh
Q 006726 501 QLTVLKALDKKL 512 (633)
Q Consensus 501 ~l~V~~a~~k~~ 512 (633)
+|.|.||.++..
T Consensus 83 ~l~V~~A~~~~~ 94 (105)
T 1sjq_A 83 PIYIQFSNHKEL 94 (105)
T ss_dssp ECCBCCCSSSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999987643
No 77
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3.1e-17 Score=133.22 Aligned_cols=80 Identities=30% Similarity=0.499 Sum_probs=74.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++. + +..|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~-----~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-K-----EHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-S-----CEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-C-----CCEECCEE
Confidence 34468999999999999999999999999999999999999999999999999999999999965 6 78999999
Q ss_pred EEEEEc
Q 006726 502 LTVLKA 507 (633)
Q Consensus 502 l~V~~a 507 (633)
|.|.+|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999986
No 78
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=136.23 Aligned_cols=87 Identities=26% Similarity=0.395 Sum_probs=81.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9988754
No 79
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=141.12 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=79.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..+++|||+|||+.+|+++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 95 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQPI 95 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT-----TCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc-----CCEECCcEE
Confidence 446899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.+|.++.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998653
No 80
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.6e-17 Score=141.54 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=80.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~ 97 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQT 97 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 3456899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.||.++.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999998654
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=149.72 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcC--ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
..++|||+|||+++|+++|+++|++|| .|..|+|+.|..+|+++|||||+|.+.++|.+||..|| |..|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln-----g~~~~Gr~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP-----GKVLNGEK 128 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST-----TCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 358999999999999999999999999 99999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 129 l~V~~a~~~~~ 139 (156)
T 3n9u_C 129 VDVRPATRQNL 139 (156)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEEcCCCcc
Confidence 99999987653
No 82
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=138.35 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=77.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV---TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~---~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
.++|||+|||+++|+++|+++|++||.|..|.++.+.. ++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ-----GHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST-----TCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC-----CCeeCCeE
Confidence 58999999999999999999999999999999999876 66899999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999998754
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=3.1e-17 Score=133.95 Aligned_cols=80 Identities=21% Similarity=0.459 Sum_probs=76.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..++++.+..++.++|||||+|.+.++|.+|+ .|| |..|+|++|.|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~-----g~~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD-----ESLFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC-----CCEECCcEEEE
Confidence 479999999999999999999999999999999999889999999999999999999999 999 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
.++.++
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998763
No 84
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.5e-17 Score=129.72 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
.+..|||+||++.+|+++|+++|.+||+|.+++++. ++|||||+|.++++|.+|++.|| +..++||+|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln-----~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALN-----NCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhc-----CCEECCcEEE
Confidence 367999999999999999999999999999998864 69999999999999999999999 9999999999
Q ss_pred EEEcc
Q 006726 504 VLKAL 508 (633)
Q Consensus 504 V~~a~ 508 (633)
|.+|.
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99993
No 85
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=135.85 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCe--EEcC
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI--FLKG 499 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~--~l~g 499 (633)
..++++|||+|||+++|+++|+++|++||.|.+|++++ .+|||||+|.+.++|.+|+..|| +. .|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln-----~~~~~i~G 86 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAA-----DNQIYIAG 86 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHH-----HSCEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhc-----CCCceeCC
Confidence 44578999999999999999999999999999998874 47999999999999999999998 65 5889
Q ss_pred eEEEEEEccChh
Q 006726 500 RQLTVLKALDKK 511 (633)
Q Consensus 500 r~l~V~~a~~k~ 511 (633)
|+|.|.++.+++
T Consensus 87 r~i~V~~S~~k~ 98 (100)
T 3r27_A 87 HPAFVNYSTSQK 98 (100)
T ss_dssp EEEEEEECSCSC
T ss_pred cEEEEEeccccc
Confidence 999999998753
No 86
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=136.28 Aligned_cols=87 Identities=26% Similarity=0.565 Sum_probs=82.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45677999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 87
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=140.71 Aligned_cols=85 Identities=26% Similarity=0.341 Sum_probs=80.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 84 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD-----GAELDGRE 84 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS-----SCCBTTBC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 3446899999999999999999999999999999999999899999999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 9999998653
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=3.1e-17 Score=138.45 Aligned_cols=84 Identities=25% Similarity=0.268 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC---
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--- 499 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--- 499 (633)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+. ++.++|||||.|.+.++|.+|+..|| |..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~gg~~ 86 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALH-----GSQTMPGAS 86 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHS-----SCCCCTTCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHc-----CCccCCCCC
Confidence 447899999999999999999999999999999999997 79999999999999999999999999 999988
Q ss_pred eEEEEEEccChhh
Q 006726 500 RQLTVLKALDKKL 512 (633)
Q Consensus 500 r~l~V~~a~~k~~ 512 (633)
++|.|.+|.++..
T Consensus 87 ~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 87 SSLVVKFADTDKE 99 (105)
T ss_dssp SCCEEEESCSSCC
T ss_pred ccEEEEECccCcc
Confidence 9999999987643
No 89
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=140.15 Aligned_cols=84 Identities=30% Similarity=0.530 Sum_probs=79.8
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|++.|| |..|+|++|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN-----GKSVDGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT-----TCCTTSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCeEE
Confidence 346899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
+|.+|.++.
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 999998754
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=5.2e-17 Score=136.50 Aligned_cols=83 Identities=27% Similarity=0.383 Sum_probs=78.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++|| |..|+++.+..++.++|||||+|.+.++|.+|+ .|| |..|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~ 84 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD-----GALLGDRS 84 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT-----TCEETTEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC-----CCeECCeE
Confidence 34468999999999999999999999997 999999999999999999999999999999999 899 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998754
No 91
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=139.57 Aligned_cols=86 Identities=28% Similarity=0.415 Sum_probs=80.5
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeec-CCCCCCceEEEEEecCHHHHHHHHHhc-CCCCCCCeEEcC
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH-QVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLGIFLKG 499 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d-~~~~~~~g~afV~f~~~e~A~~A~~~l-n~~~~~g~~l~g 499 (633)
....++|||+|||+.+|+++|+++|++||.|..|+++.+ ..++.++|||||+|.+.++|.+|+..| | |..|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-----~~~~~g 86 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH-----STHLYG 86 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT-----CCBSSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc-----CCeECC
Confidence 445789999999999999999999999999999999998 789999999999999999999999999 9 999999
Q ss_pred eEEEEEEccChhh
Q 006726 500 RQLTVLKALDKKL 512 (633)
Q Consensus 500 r~l~V~~a~~k~~ 512 (633)
++|.|.||.++..
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999987643
No 92
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=4.6e-17 Score=134.89 Aligned_cols=84 Identities=29% Similarity=0.513 Sum_probs=79.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
+.++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCCc
Q 006726 295 PKNI 298 (633)
Q Consensus 295 ~~~~ 298 (633)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8754
No 93
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=135.30 Aligned_cols=81 Identities=27% Similarity=0.381 Sum_probs=76.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+.+++++|+++|++||.|..|+++.+.. +.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 87 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLN-----GIRLYGRPI 87 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhC-----CCEECCCEE
Confidence 3468999999999999999999999999999999999975 8999999999999999999999999 999999999
Q ss_pred EEEEccC
Q 006726 503 TVLKALD 509 (633)
Q Consensus 503 ~V~~a~~ 509 (633)
.|.+|..
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999863
No 94
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=4.5e-17 Score=140.63 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=78.1
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|| |..|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 110 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN-----GFQVGTK 110 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC-----CCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEcc
Q 006726 501 QLTVLKAL 508 (633)
Q Consensus 501 ~l~V~~a~ 508 (633)
+|+|.|++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999974
No 95
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=3.9e-17 Score=132.05 Aligned_cols=82 Identities=29% Similarity=0.430 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
..+.++|||+|||+.+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q 006726 293 AV 294 (633)
Q Consensus 293 ~~ 294 (633)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 96
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=3.1e-17 Score=139.15 Aligned_cols=86 Identities=22% Similarity=0.374 Sum_probs=76.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+++|+++|+++|++||.|..|+++.+..+|.++|||||.|.+.++|.+|+..+ +..|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~------~~~l~g~ 94 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS------RHELDSK 94 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS------CEEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC------CCcCCCE
Confidence 3445789999999999999999999999999999999999989999999999999999999999875 5999999
Q ss_pred EEEEEEccChhh
Q 006726 501 QLTVLKALDKKL 512 (633)
Q Consensus 501 ~l~V~~a~~k~~ 512 (633)
.|.|.+|.++..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987653
No 97
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=134.50 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=75.4
Q ss_pred CCCcEEEecCCCCCCCHHHHH----HHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 423 ELQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
..+++|||+|||+.+++++|+ ++|++||.|.+|+|+.+..+ +|||||+|.+.++|.+|+..|| |..|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~-----g~~~~ 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLH-----RYKIG 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHT-----TEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhC-----CCEEC
Confidence 346899999999999999999 99999999999999988755 8999999999999999999999 99999
Q ss_pred CeEEEEEEccChh
Q 006726 499 GRQLTVLKALDKK 511 (633)
Q Consensus 499 gr~l~V~~a~~k~ 511 (633)
|++|+|.+|.++.
T Consensus 79 gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 79 SKKILVSLATGAS 91 (96)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEEcCCCC
Confidence 9999999997653
No 98
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=137.18 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=78.0
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCC-CCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT-KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~-~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
...++|||+|||+++|+++|+++|++|| |..|.|+.+..+ +.++|||||+|.+.++|.+|+ .|| +..|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-----EESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-----TCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-----CCEeCCcE
Confidence 3468999999999999999999999999 999999999887 999999999999999999999 999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 86 l~V~~a~~~~~ 96 (104)
T 1wi8_A 86 IRVDVADQAQD 96 (104)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 99999987643
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=3.4e-17 Score=150.23 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=79.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..+++|||+|||+.+|+++|+++|++||.|..|.|+.+..+|.++|||||.|.+.++|.+||..|| |..|.|++|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN-----GAEIMGQTI 144 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC-----CCEECCEEE
Confidence 346899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
.|.||.++..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999987654
No 100
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=136.69 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=78.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceE-EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVV-SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~-~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
...++|||+|||+.+|+++|+++|++||.|. .|+++.++.++.++|||||+|.+.++|.+|+..|| |..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN-----GKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT-----TSEESSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc-----CCccCCCC
Confidence 3468999999999999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred ----EEEEEccCh
Q 006726 502 ----LTVLKALDK 510 (633)
Q Consensus 502 ----l~V~~a~~k 510 (633)
|+|.||.+.
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 999998754
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=134.03 Aligned_cols=81 Identities=17% Similarity=0.362 Sum_probs=76.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCC-CceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKR-PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~-~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
.++|||+|||+++|+++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|| |..|+|++|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~ 78 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD-----GGQIDGQEIT 78 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC-----CCeECCeEEE
Confidence 57999999999999999999999999999999999987666 89999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 006726 504 VLKALDK 510 (633)
Q Consensus 504 V~~a~~k 510 (633)
|.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9999764
No 102
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=1.6e-16 Score=136.45 Aligned_cols=89 Identities=31% Similarity=0.553 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
......++|||+|||+.+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EEecCCCcc
Q 006726 291 DWAVPKNIY 299 (633)
Q Consensus 291 ~~~~~~~~~ 299 (633)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=134.50 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|+++.+.. .++|||||+|.+.++|.+|+..|| |..|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 84 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMN-----GRKILGKE 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHT-----TEEETTEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhC-----CCCcCCCe
Confidence 34468999999999999999999999999999999998853 369999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.||.++..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 VKVNWATTPSS 95 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEECCCCcc
Confidence 99999987543
No 104
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=133.60 Aligned_cols=86 Identities=20% Similarity=0.420 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ ||+..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44667899999999999999999999999999999999998899999999999999999999999 89999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987654
No 105
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=136.75 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=78.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|| |..|+|++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKV 87 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC-----CCeeCCeEE
Confidence 346899999999999999999999999999988889998899999999999999999999999999 999999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
.|.++..+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998754
No 106
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=137.63 Aligned_cols=84 Identities=30% Similarity=0.424 Sum_probs=78.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN-----GRIVATKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT-----TCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 345789999999999999999999999999999999988 78999999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 99999987643
No 107
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=138.59 Aligned_cols=85 Identities=24% Similarity=0.450 Sum_probs=79.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+.. | +..|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~-----~~~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R-----PHTLDGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C-----SEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C-----CCeECCEE
Confidence 34468999999999999999999999999999999999998999999999999999999999999 9 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987653
No 108
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=4.7e-17 Score=149.27 Aligned_cols=122 Identities=24% Similarity=0.397 Sum_probs=80.4
Q ss_pred EEeCCHHHHHHHHHHhCCCeec--CeEEEEcc--------------------CCCCCCCCCCCEEEEcCCCCCCCHHHHH
Q 006726 177 VLYTTVKSACASVALLHQKEIK--GGTVWARQ--------------------LGGEGSKTQKWKLIIRNIPFKAKVNEIK 234 (633)
Q Consensus 177 V~F~~~~~A~~A~~~l~~~~~~--g~~i~v~~--------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 234 (633)
.+|+..++|..|+..+++.... |+...... ..........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7789999999999888776554 33222211 0011123456789999999999999999
Q ss_pred HhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCCc
Q 006726 235 DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298 (633)
Q Consensus 235 ~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 298 (633)
.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999988999999999999999999999999999999999999999987653
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=6.6e-17 Score=136.93 Aligned_cols=81 Identities=21% Similarity=0.386 Sum_probs=77.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 99 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYN-----GVPLDGRP 99 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 3447899999999999999999999999999999999998 89999999999999999999999999 99999999
Q ss_pred EEEEEcc
Q 006726 502 LTVLKAL 508 (633)
Q Consensus 502 l~V~~a~ 508 (633)
|.|.+|.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 110
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=6.3e-18 Score=141.10 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-e
Q 006726 214 TQKWKLIIRNIPF------KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-R 286 (633)
Q Consensus 214 ~~~~~l~v~nlp~------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~ 286 (633)
...++|||+|||+ .+++++|+++|++||.|.+|.|++++.+|+++|||||+|.+.++|.+|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999899999999999999999999999999999999 9
Q ss_pred eEEEEEecCCCc
Q 006726 287 PIAVDWAVPKNI 298 (633)
Q Consensus 287 ~i~v~~~~~~~~ 298 (633)
.|.|.++.++..
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987644
No 111
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=9e-17 Score=143.08 Aligned_cols=86 Identities=23% Similarity=0.445 Sum_probs=81.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+++|+++|+++|+.||.|..|+|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~ 112 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN-----GFNILNK 112 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT-----TEECSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCe
Confidence 44557899999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.+|.++.
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 112
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=140.83 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=78.6
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+.+|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+|+ .|| |..|+|+.|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~l~ 97 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT-----GQRLLGVPII 97 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT-----TEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC-----CCEeCCeEEE
Confidence 3589999999999999999999999999999999999989999999999999999999999 999 9999999999
Q ss_pred EEEccChhh
Q 006726 504 VLKALDKKL 512 (633)
Q Consensus 504 V~~a~~k~~ 512 (633)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (114)
T 2cq4_A 98 VQASQAEKN 106 (114)
T ss_dssp EEEHHHHHH
T ss_pred EEecCCCcc
Confidence 999876543
No 113
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=139.70 Aligned_cols=86 Identities=24% Similarity=0.285 Sum_probs=80.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceE--------EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCC
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVV--------SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--------~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~ 493 (633)
....++|||+|||+++|+++|+++|++||.|. .|+|+.+..++.++|||||+|.+.++|.+|+..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~----- 86 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD----- 86 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT-----
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC-----
Confidence 34578999999999999999999999999999 69999998899999999999999999999999999
Q ss_pred CeEEcCeEEEEEEccChhh
Q 006726 494 GIFLKGRQLTVLKALDKKL 512 (633)
Q Consensus 494 g~~l~gr~l~V~~a~~k~~ 512 (633)
|..|+|++|+|.+|.++..
T Consensus 87 g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TCEETTEECEEECSSCCCC
T ss_pred CCccCCCEEEEEECCCCCC
Confidence 9999999999999987643
No 114
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=1.9e-17 Score=142.23 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.7
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..+++|||+|||+.+|+++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..|| |..++|+.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 77 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLS-----GFNVSNRYL 77 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHT-----TCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCeEE
Confidence 34689999999999999999999999999999999865 5569999999999999999999999 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.+|.++.
T Consensus 78 ~v~~a~~~~ 86 (115)
T 3lqv_A 78 VVLYYNANR 86 (115)
T ss_dssp EEEECCHHH
T ss_pred EEEEecCCh
Confidence 999998653
No 115
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=133.58 Aligned_cols=85 Identities=25% Similarity=0.484 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...++|||+|||..+++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 006726 294 VPKNI 298 (633)
Q Consensus 294 ~~~~~ 298 (633)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87653
No 116
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-17 Score=133.42 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
...+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..+.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecC
Q 006726 292 WAVP 295 (633)
Q Consensus 292 ~~~~ 295 (633)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 117
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=137.73 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=78.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+|+..++ + .|.|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-----~-~~~g~~ 87 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-----P-IIDGRK 87 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS-----C-EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC-----C-cCCCEE
Confidence 3456899999999999999999999999999999999999899999999999999999999999999 8 899999
Q ss_pred EEEEEccCh
Q 006726 502 LTVLKALDK 510 (633)
Q Consensus 502 l~V~~a~~k 510 (633)
|.|.+|.++
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999999764
No 118
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=1.1e-17 Score=136.81 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=72.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
.+|||+|||+.+|+++|+++|++|| .|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 119
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=135.62 Aligned_cols=87 Identities=30% Similarity=0.440 Sum_probs=82.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987654
No 120
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=133.73 Aligned_cols=85 Identities=25% Similarity=0.439 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998764
No 121
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=138.60 Aligned_cols=84 Identities=35% Similarity=0.553 Sum_probs=80.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+.+|+++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|.+|++.|| |..|+|++|.|
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v 82 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN-----GREFSGRALRV 82 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS-----SBSCSSSCBEE
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeeCCcEEEE
Confidence 5799999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccChhhh
Q 006726 505 LKALDKKLA 513 (633)
Q Consensus 505 ~~a~~k~~~ 513 (633)
.+|.++...
T Consensus 83 ~~a~~~~~~ 91 (104)
T 1p1t_A 83 DNAASEKNK 91 (104)
T ss_dssp EETTCTTHH
T ss_pred EeCCCccch
Confidence 999987653
No 122
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=131.38 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=76.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++| .|..|+++.+ .+|+++|||||+|.+.++|.+|+. || |..|+|++|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~-----g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN-----REYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC-----SEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC-----CceeCCcEE
Confidence 346899999999999999999999999 9999999999 789999999999999999999999 99 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.+|.++.
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 999998753
No 123
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=133.86 Aligned_cols=84 Identities=23% Similarity=0.509 Sum_probs=77.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 84 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLH-----GTVVEGRK 84 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEE
Confidence 44568999999999999999999999999999999998863 489999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 IEVNNATARVM 95 (103)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEcccCCC
Confidence 99999987643
No 124
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=133.78 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=78.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+|+. + +..|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~-----~~~~~g~~ 84 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--Q-----RHMIDGRW 84 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--S-----CEEETTEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--c-----CCeeCCeE
Confidence 3446899999999999999999999999999999999999899999999999999999999998 4 68999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.++.++..
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cqg_A 85 CDCKLPNSKQS 95 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEEecCCCCc
Confidence 99999987654
No 125
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=3.1e-17 Score=138.75 Aligned_cols=85 Identities=27% Similarity=0.359 Sum_probs=79.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE---c
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL---K 498 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l---~ 498 (633)
....++|||+|||+.+|+++|+++|++||.|..|+++.+..++.++|||||.|.+.++|.+|+..|| |..+ .
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~~ 84 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH-----EQKTLPGM 84 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT-----TTCCCTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc-----CCcccCCC
Confidence 3446899999999999999999999999999999999999899999999999999999999999999 8887 8
Q ss_pred CeEEEEEEccChh
Q 006726 499 GRQLTVLKALDKK 511 (633)
Q Consensus 499 gr~l~V~~a~~k~ 511 (633)
|++|.|.+|.++.
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 9999999998754
No 126
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=139.99 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=78.1
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+++|+++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|.+|++.|| |..|+|++|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~-----g~~~~g~~l~ 79 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN-----GKSLHGKAIK 79 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS-----SCBCSSSBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CCEECCEEEE
Confidence 46899999999999999999999999999999999998 89999999999999999999999999 9999999999
Q ss_pred EEEccChh
Q 006726 504 VLKALDKK 511 (633)
Q Consensus 504 V~~a~~k~ 511 (633)
|.+|.++.
T Consensus 80 V~~a~~~~ 87 (116)
T 2fy1_A 80 VEQAKKPS 87 (116)
T ss_dssp EEECCCSS
T ss_pred EEECCCCC
Confidence 99998754
No 127
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=136.60 Aligned_cols=86 Identities=22% Similarity=0.506 Sum_probs=81.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997753
No 128
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8e-17 Score=132.92 Aligned_cols=83 Identities=30% Similarity=0.411 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..+.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45667899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 129
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=135.46 Aligned_cols=87 Identities=28% Similarity=0.481 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
......++|||+|||+.+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.|+.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9997654
No 130
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.2e-17 Score=135.53 Aligned_cols=88 Identities=26% Similarity=0.385 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
......++|||+|||+.+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCCc
Q 006726 291 DWAVPKNI 298 (633)
Q Consensus 291 ~~~~~~~~ 298 (633)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987653
No 131
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=133.19 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=71.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
..+.++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|+.. +..|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAV---TPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS---CCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC---CceECCcE
Confidence 345789999999999999999999999999999987754 899999999999999999976410 68899999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.||.++..
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999987543
No 132
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=2.1e-17 Score=144.51 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=80.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
...+.++|||+|||+++|+++|+++|++||.|..|+++.+..++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln-----g~~i~g~ 116 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN-----GMELDGR 116 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT-----TCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.||.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999998753
No 133
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=135.34 Aligned_cols=87 Identities=28% Similarity=0.437 Sum_probs=82.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45677899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 134
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=138.38 Aligned_cols=85 Identities=24% Similarity=0.326 Sum_probs=79.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhh-cCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE-EcC
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSA-FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF-LKG 499 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~-l~g 499 (633)
....++|||+|||+++|+++|+++|++ ||.|..|+|+.+. +|.++|||||+|.+.++|.+|+..|| |.. |+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~g 79 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ-----GAVGLGS 79 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT-----TCCSSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc-----CCcccCC
Confidence 344689999999999999999999999 9999999999998 99999999999999999999999999 999 999
Q ss_pred eEEEEEEccChhh
Q 006726 500 RQLTVLKALDKKL 512 (633)
Q Consensus 500 r~l~V~~a~~k~~ 512 (633)
++|.|.+|.++..
T Consensus 80 ~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 80 KPVRLSVAIPKAS 92 (104)
T ss_dssp SCCCCCBCCCCCS
T ss_pred EeEEEEEccCCCc
Confidence 9999999987643
No 135
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.3e-17 Score=134.14 Aligned_cols=85 Identities=32% Similarity=0.518 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
...++|||+|||+.+++++|+++|++||.|..+ .+++++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999888999999999999999999999999999999999999999
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 136
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=1.7e-17 Score=130.62 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=72.1
Q ss_pred EEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEE
Q 006726 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (633)
Q Consensus 427 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~ 506 (633)
+|||+|||+++|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ +| |..|+|++|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~-----~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH-----FHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS-----CCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC-----CCEECCEEEEEEe
Confidence 58999999999999999999999999999999998899999999999999999999997 99 9999999999988
Q ss_pred c
Q 006726 507 A 507 (633)
Q Consensus 507 a 507 (633)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 6
No 137
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.2e-17 Score=135.77 Aligned_cols=86 Identities=27% Similarity=0.573 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997754
No 138
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=136.85 Aligned_cols=92 Identities=35% Similarity=0.491 Sum_probs=81.0
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCC-CCCCCeEEcC
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKT-TSGLGIFLKG 499 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~-~~~~g~~l~g 499 (633)
.....++|||+|||+++|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+|+..||. ....+..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 344578999999999999999999999999999999999999999999999999999999999999861 0011589999
Q ss_pred eEEEEEEccChhh
Q 006726 500 RQLTVLKALDKKL 512 (633)
Q Consensus 500 r~l~V~~a~~k~~ 512 (633)
++|.|.+|.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987654
No 139
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6e-17 Score=138.70 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=77.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCce-EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEV-VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V-~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
...++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||.. | +..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~-----~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-H-----RKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-C-----SEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-C-----CCccCCeE
Confidence 346899999999999999999999999999 889999998 899999999999999999999987 9 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.+++.
T Consensus 86 i~v~~a~~~~~ 96 (114)
T 2cpy_A 86 AFVHVVTLEDM 96 (114)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999987654
No 140
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=133.09 Aligned_cols=84 Identities=25% Similarity=0.465 Sum_probs=79.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--------VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 282 (633)
......++|||+|||+.+++++|+++|++||.|.. +.++.++.+|+++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 35567899999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeeEEEEEec
Q 006726 283 FGKRPIAVDWAV 294 (633)
Q Consensus 283 ~~g~~i~v~~~~ 294 (633)
+.|+.|+|.+|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999973
No 141
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=3.1e-17 Score=135.71 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=76.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..+.++.+..++.++|||||+|.++++|.+|++.|| |..|+|++|.|
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~l~v 89 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN-----DRPIGSRKVKL 89 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC-----CCeECCcEEEE
Confidence 5899999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccC
Q 006726 505 LKALD 509 (633)
Q Consensus 505 ~~a~~ 509 (633)
.++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 142
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=139.54 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=75.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecC-CCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~-~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
.....++|||+|||+++|+++|+++|++|| |..|+++.+. .+|+++|||||+|.+.++|.+|+ .|| |..|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-----g~~~~g 87 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-----EESLGN 87 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-----TCCBTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-----CCEECC
Confidence 344578999999999999999999999999 9999999998 68999999999999999999999 999 999999
Q ss_pred eEEEEEEccCh
Q 006726 500 RQLTVLKALDK 510 (633)
Q Consensus 500 r~l~V~~a~~k 510 (633)
+.|.|.+|.++
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999999875
No 143
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=139.38 Aligned_cols=83 Identities=23% Similarity=0.466 Sum_probs=78.8
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+++|+++|+++|++||.|..|+|+.+..++.++|||||+|.+.++|.+|+.. + +..|+|++|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~-----~~~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R-----PHSIDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C-----SEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C-----CcEECCEEEE
Confidence 358999999999999999999999999999999999998999999999999999999999988 8 9999999999
Q ss_pred EEEccChhh
Q 006726 504 VLKALDKKL 512 (633)
Q Consensus 504 V~~a~~k~~ 512 (633)
|.+|.++..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999988754
No 144
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=2e-16 Score=133.39 Aligned_cols=86 Identities=23% Similarity=0.401 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC---eeE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK---RPI 288 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~i 288 (633)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999986 79999999999999999999999999999988 999
Q ss_pred EEEEecCCCc
Q 006726 289 AVDWAVPKNI 298 (633)
Q Consensus 289 ~v~~~~~~~~ 298 (633)
.|.|+.++..
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987654
No 145
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.69 E-value=1.1e-16 Score=137.48 Aligned_cols=87 Identities=29% Similarity=0.401 Sum_probs=81.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 146
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=9.7e-17 Score=138.15 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=77.1
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCc---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
....++|||+|||+++|+++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|.+|+. +| +..|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~-----g~~~~ 86 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KD-----RESMG 86 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GT-----TEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC-----CCeEC
Confidence 344689999999999999999999999999 89999999986 9999999999999999999999 99 99999
Q ss_pred CeEEEEEEccChh
Q 006726 499 GRQLTVLKALDKK 511 (633)
Q Consensus 499 gr~l~V~~a~~k~ 511 (633)
||.|.|.++..++
T Consensus 87 gr~i~V~~a~~~~ 99 (118)
T 2db1_A 87 HRYIEVFKSHRTE 99 (118)
T ss_dssp TEEEEEEEECHHH
T ss_pred CeEEEEEECCHHH
Confidence 9999999997654
No 147
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=7.3e-17 Score=132.59 Aligned_cols=82 Identities=29% Similarity=0.456 Sum_probs=76.7
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|..|+++.+ ++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~-----g~~~~g~~l 78 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN-----GMKLSGREI 78 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT-----TCCBTTBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 44689999999999999999999999999999999874 78999999999999999999999999 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.++.++.
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 999998753
No 148
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=132.78 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4457889999999999999999999999999999999987 78899999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987654
No 149
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=134.36 Aligned_cols=87 Identities=34% Similarity=0.649 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEccc-CCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHN-TDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~ 289 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++++ ..++.++|||||+|.+.++|.+|+..| ||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4567789999999999999999999999999999999988 678999999999999999999999999 99999999999
Q ss_pred EEEecCCCc
Q 006726 290 VDWAVPKNI 298 (633)
Q Consensus 290 v~~~~~~~~ 298 (633)
|.|+.++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 150
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=134.70 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=81.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC------CceeCC
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN------GQKFGK 285 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~------g~~~~g 285 (633)
.....++|||+|||+.+++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|.+|+..|| |..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44567899999999999999999999999999999999998899999999999999999999999999 999999
Q ss_pred eeEEEEEecCCCc
Q 006726 286 RPIAVDWAVPKNI 298 (633)
Q Consensus 286 ~~i~v~~~~~~~~ 298 (633)
+.|.|.|+.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987654
No 151
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=4.8e-17 Score=142.76 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=77.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCc---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
....++|||+|||+++|+++|+++|++||. |..|+|+++.. |+++|||||+|.+.++|.+|++ +| +..|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~-----g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KD-----RESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TT-----EEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC-----CCEEC
Confidence 344689999999999999999999999999 89999999986 9999999999999999999999 99 99999
Q ss_pred CeEEEEEEccChhh
Q 006726 499 GRQLTVLKALDKKL 512 (633)
Q Consensus 499 gr~l~V~~a~~k~~ 512 (633)
||.|.|.+|.+++.
T Consensus 114 gr~i~V~~a~~~e~ 127 (136)
T 2hgl_A 114 HRYIEVFKSHRTEM 127 (136)
T ss_dssp SSEEEEEECCHHHH
T ss_pred CEEEEEEECChHHH
Confidence 99999999876543
No 152
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.5e-16 Score=135.44 Aligned_cols=86 Identities=29% Similarity=0.541 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997754
No 153
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=8.8e-17 Score=126.61 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
..+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.|||..+.|+.|+|+++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4577999999999999999999999999999999865 6899999999999999999999999999999999998
Q ss_pred c
Q 006726 294 V 294 (633)
Q Consensus 294 ~ 294 (633)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 154
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=2.5e-16 Score=137.18 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.2
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
....+++|||+|||+.+++++|+++|++||.|..|+++.+. +|.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 104 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK-----GVPLDGR 104 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHT-----TEESSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcC-----CCEECCc
Confidence 34557899999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred EEEEEEccCh
Q 006726 501 QLTVLKALDK 510 (633)
Q Consensus 501 ~l~V~~a~~k 510 (633)
+|.|.+|.+.
T Consensus 105 ~l~V~~a~~~ 114 (124)
T 2kt5_A 105 PMDIQLVASQ 114 (124)
T ss_dssp EEEEEEECCT
T ss_pred EEEEEEeCCC
Confidence 9999999864
No 155
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-17 Score=135.02 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=75.8
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
++++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||.|.+.++|.+|+..|| |..|+|+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~~~ 78 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAK 78 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH-----HHTCCEESCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc-----CCeEeeEEEe
Confidence 36899999999999999999999999999999999999899999999999999999999999999 9999999998
Q ss_pred EEEcc
Q 006726 504 VLKAL 508 (633)
Q Consensus 504 V~~a~ 508 (633)
|.++.
T Consensus 79 ~~~~~ 83 (85)
T 1x4e_A 79 QSGPS 83 (85)
T ss_dssp SSCCC
T ss_pred ecCCC
Confidence 87754
No 156
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=9e-17 Score=135.41 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=75.4
Q ss_pred CCCCcEEEecCCCCCC------CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCe
Q 006726 422 DELQNTIFICNLPFDL------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI 495 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~ 495 (633)
....++|||+|||+.+ |+++|+++|++||.|..|.++ ..+|.++|||||+|.+.++|.+|+..|| |.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~-----g~ 84 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD-----GY 84 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS-----SE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC-----Cc
Confidence 3346899999999999 789999999999999999887 3589999999999999999999999999 99
Q ss_pred EEcCe-EEEEEEccCh
Q 006726 496 FLKGR-QLTVLKALDK 510 (633)
Q Consensus 496 ~l~gr-~l~V~~a~~k 510 (633)
.|+|+ +|.|.+|.+.
T Consensus 85 ~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSTTCEEEEECSCCC
T ss_pred ccCCCceEEEEEcchH
Confidence 99998 9999998764
No 157
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=5.7e-17 Score=141.72 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=80.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| |..|+|+.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 93 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN-----GQDLMGQP 93 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT-----TCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCeeCCeE
Confidence 3447899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999986543
No 158
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.5e-17 Score=136.21 Aligned_cols=83 Identities=23% Similarity=0.532 Sum_probs=76.8
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
.....++|||+|||+++|+++|+++|++||.|..|+++.+. +.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~ 97 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLH-----GTVVEGR 97 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHT-----TCEETTE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcC-----CCEECCE
Confidence 34457899999999999999999999999999999999885 4589999999999999999999999 9999999
Q ss_pred EEEEEEccCh
Q 006726 501 QLTVLKALDK 510 (633)
Q Consensus 501 ~l~V~~a~~k 510 (633)
+|.|.+|.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999865
No 159
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=132.41 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC---CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD---TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998765 5689999999999999999999999999999999999
Q ss_pred EEecCCCc
Q 006726 291 DWAVPKNI 298 (633)
Q Consensus 291 ~~~~~~~~ 298 (633)
.|+.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99977643
No 160
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=129.62 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCC-ceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
..++|||+|||..+++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999998876665 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 006726 294 VPKN 297 (633)
Q Consensus 294 ~~~~ 297 (633)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 161
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-17 Score=144.83 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=77.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEE--EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCe----E
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI----F 496 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~----~ 496 (633)
...++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|| |. .
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~-----g~~~~~~ 94 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ-----ALHPPLT 94 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT-----TCCCSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc-----CCCCCcc
Confidence 44689999999999999999999999999977 99999999999999999999999 9999999999 98 9
Q ss_pred EcCeEEEEEEccCh
Q 006726 497 LKGRQLTVLKALDK 510 (633)
Q Consensus 497 l~gr~l~V~~a~~k 510 (633)
|+||+|.|.+|.++
T Consensus 95 ~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 95 IDGKTINVEFAKGS 108 (131)
T ss_dssp GGGCCCCCEECCCS
T ss_pred CCCEEEEEEECCCC
Confidence 99999999999875
No 162
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=134.89 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=73.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++| .|..|+|+.+.. |+++|||||+|.+.++|.+|| .+| +..|+||.|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~-----~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRN-----RMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTT-----TEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcC-----CCeECCeEEEE
Confidence 5799999999999999999999999 899999999975 999999999999999999999 799 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
..+..+
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 998754
No 163
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4e-17 Score=135.37 Aligned_cols=80 Identities=21% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCCcEEEecCCCC-CCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 423 ELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 423 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
.++++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+..||.. +..|.||+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~~~Gr~ 83 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTT---PALVFGKP 83 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHS---CCEETTEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCC---CceECCcE
Confidence 3478999999999 9999999999999999999988754 589999999999999999998811 24699999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|..+.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999998643
No 164
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=133.09 Aligned_cols=86 Identities=24% Similarity=0.331 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE-EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee---
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW-NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP--- 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 287 (633)
.....++|||+|||+.+++++|+++|++||.|. +|.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -EEEEEecCCC
Q 006726 288 -IAVDWAVPKN 297 (633)
Q Consensus 288 -i~v~~~~~~~ 297 (633)
|+|.|+.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997653
No 165
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=9.4e-17 Score=139.25 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=74.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHH----HHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE
Q 006726 422 DELQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l 497 (633)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~ln-----g~~l 97 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQ-----GYPF 97 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHST-----TCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHC-----CCEe
Confidence 4457899999999999999876 7999999999987643 57899999999999999999999999 9999
Q ss_pred cCeEEEEEEccChhh
Q 006726 498 KGRQLTVLKALDKKL 512 (633)
Q Consensus 498 ~gr~l~V~~a~~k~~ 512 (633)
.|++|.|.||..+..
T Consensus 98 ~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 98 QGNPLVITFSETPQS 112 (127)
T ss_dssp TTSCCEEEECCCCCH
T ss_pred CCCEEEEEEccCcch
Confidence 999999999987654
No 166
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.5e-16 Score=131.37 Aligned_cols=85 Identities=24% Similarity=0.479 Sum_probs=79.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++|| |..|.++++..+|+++|||||+|.+.++|.+|+ .|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 999999999888999999999999999999999 799999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987653
No 167
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=3e-16 Score=127.43 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 45677899999999999999999999999999999999998899999999999999999999997 58899999999998
Q ss_pred Ee
Q 006726 292 WA 293 (633)
Q Consensus 292 ~~ 293 (633)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 168
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=5.5e-17 Score=139.38 Aligned_cols=81 Identities=23% Similarity=0.402 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 45689999999999999999999999999999999999
Q ss_pred ecCC
Q 006726 293 AVPK 296 (633)
Q Consensus 293 ~~~~ 296 (633)
+.++
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 8653
No 169
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.4e-17 Score=137.07 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=76.8
Q ss_pred CCcEEEecCCCCCCCHHHHH---HHhhhcCceEEEEEeecCCCC---CCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE
Q 006726 424 LQNTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQVTK---RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~---~~F~~~G~V~~v~i~~d~~~~---~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l 497 (633)
..++|||+|||+++++++|+ ++|++||.|..|.|+.+..++ .++|||||+|.+.++|.+|++.|| |..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln-----g~~~ 88 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN-----NVVV 88 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT-----TEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC-----CCEE
Confidence 46799999999999999999 999999999999999887644 566999999999999999999999 9999
Q ss_pred cCeEEEEEEccChh
Q 006726 498 KGRQLTVLKALDKK 511 (633)
Q Consensus 498 ~gr~l~V~~a~~k~ 511 (633)
+|++|.|.+|.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998764
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-17 Score=141.56 Aligned_cols=87 Identities=20% Similarity=0.336 Sum_probs=79.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+||. || |..|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~-----g~~~~gr~ 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH-----KQYMGNRF 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC-----SBCSTTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC-----CCeECCcE
Confidence 3456899999999999999999999999999987677777899999999999999999999999 99 99999999
Q ss_pred EEEEEccChhhhc
Q 006726 502 LTVLKALDKKLAH 514 (633)
Q Consensus 502 l~V~~a~~k~~~~ 514 (633)
|.|.+|..++...
T Consensus 96 i~V~~a~~~~~~~ 108 (124)
T 1wel_A 96 IQVHPITKKGMLE 108 (124)
T ss_dssp BEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
Confidence 9999998776433
No 171
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.3e-17 Score=137.16 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=78.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCc-eEEEEEe-ecCCCCCCceEEEEEecCHHHHHHHHHhc-CCCCCCC-eEEcC
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPV-LHQVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLG-IFLKG 499 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~-~d~~~~~~~g~afV~f~~~e~A~~A~~~l-n~~~~~g-~~l~g 499 (633)
..++|||+|||+++|+++|+++|++||. |..|.++ .+..+|.++|||||+|.+.++|.+|+..| | | ..|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-----g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMP-----GRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTT-----CCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhC-----CCceecC
Confidence 3689999999999999999999999998 9999988 78888999999999999999999999999 5 5 89999
Q ss_pred eEEEEEEccChhh
Q 006726 500 RQLTVLKALDKKL 512 (633)
Q Consensus 500 r~l~V~~a~~k~~ 512 (633)
++|.|.||.++..
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999987654
No 172
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=135.15 Aligned_cols=82 Identities=26% Similarity=0.361 Sum_probs=77.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN-----GQLLFDRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC-----CCEeCCCEE
Confidence 446899999999999999999999999999999999987 58999999999999999999999999 999999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
.|.++...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99998753
No 173
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=132.65 Aligned_cols=83 Identities=20% Similarity=0.375 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeeE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPI 288 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i 288 (633)
+++.+.++|||+|||+.+|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..+.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 35677899999999999999999999999999999999873 69999999999999999998864 78999999
Q ss_pred EEEEecCCCcc
Q 006726 289 AVDWAVPKNIY 299 (633)
Q Consensus 289 ~v~~~~~~~~~ 299 (633)
+|.|+.++...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 174
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=134.86 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=75.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEE-EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS-FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~-v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+|+++|||||+|.++++|.+|+.. | +..|+||.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~-----~~~~~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-H-----KERIGHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-T-----TCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-C-----cchhCCcE
Confidence 34689999999999999999999999999997 888888 6899999999999999999999988 8 99999999
Q ss_pred EEEEEccCh
Q 006726 502 LTVLKALDK 510 (633)
Q Consensus 502 l~V~~a~~k 510 (633)
|.|.++..+
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 999998754
No 175
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.7e-16 Score=142.91 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=80.5
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|| +..|+|++|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN-----GTRLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT-----TSEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCEECCeEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
.|.||.++..
T Consensus 112 ~V~~a~~~~~ 121 (156)
T 1h2v_Z 112 RTDWDAGFKE 121 (156)
T ss_dssp EEEEESCCCT
T ss_pred EEEECCCCCC
Confidence 9999987543
No 176
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7e-17 Score=134.97 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=74.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.| .|+|++++ +++++|||||+|.+.++|.+|| .+| +..|+||.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~-----~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKD-----KANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTS-----SCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhC-----CCeECCcEE
Confidence 446899999999999999999999999955 99999998 8999999999999999999999 579 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.++...+
T Consensus 85 ~V~~~~~~~ 93 (102)
T 1wez_A 85 ELFLNSTAG 93 (102)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999987543
No 177
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.67 E-value=2.1e-16 Score=128.89 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.++|||+|||+.+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 469999999999999999999999999999999998889999999999999999999999 8999999999999999876
Q ss_pred C
Q 006726 296 K 296 (633)
Q Consensus 296 ~ 296 (633)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 178
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.8e-16 Score=133.94 Aligned_cols=87 Identities=26% Similarity=0.394 Sum_probs=81.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCeeE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPI 288 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i 288 (633)
.....++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456778999999999999999999999999999999999988899999999999999999999999999988 89999
Q ss_pred EEEEecCCCc
Q 006726 289 AVDWAVPKNI 298 (633)
Q Consensus 289 ~v~~~~~~~~ 298 (633)
.|.|+.++..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987653
No 179
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-16 Score=132.71 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|++.|| +..|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 90 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRD-----GYDYDGYR 90 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 345689999999999999999999999999999988654 5689999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 91 l~V~~a~~~~ 100 (109)
T 1x4a_A 91 LRVEFPRSGR 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEEcccCC
Confidence 9999998753
No 180
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=129.63 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce--eCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK--FGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~i~ 289 (633)
...++++|||+|||+.+|+++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|++.|+|.. +.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 445778999999999999999999999999999999975 46899999999999999999999875 7899999
Q ss_pred EEEecCCC
Q 006726 290 VDWAVPKN 297 (633)
Q Consensus 290 v~~~~~~~ 297 (633)
|.||.++.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99997754
No 181
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=136.69 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=71.9
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|| |..++|++|.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLD-----GKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHH-----HSCSSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHC-----CCeECCcEEEEE
Confidence 58999999999999999999999999999998876 69999999999999999999999 999999999999
Q ss_pred EccChh
Q 006726 506 KALDKK 511 (633)
Q Consensus 506 ~a~~k~ 511 (633)
++.++.
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 998754
No 182
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.5e-17 Score=137.21 Aligned_cols=82 Identities=26% Similarity=0.337 Sum_probs=72.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
..++++|||+|||+++|+++|+++|++||.|..|+|+.+ +|||||+|.+.++|.+|++.++.. +..|.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~---~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV---TPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHH---CCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccC---CceECCeE
Confidence 344789999999999999999999999999999998865 799999999999999999988710 35899999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.+++.
T Consensus 99 l~V~~a~~k~~ 109 (119)
T 2ad9_A 99 IYIQFSNHKEL 109 (119)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCCCC
Confidence 99999987643
No 183
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-17 Score=129.00 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=73.2
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
++|||+|||+++|+++|+++|++||.|..+.++.++.+|.++|||||.|.+.++|.+|+..++ ..++|++|.|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~------~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR------HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT------CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC------CccCCEEEEEE
Confidence 489999999999999999999999999999999998899999999999999999999999886 78999999999
Q ss_pred Ecc
Q 006726 506 KAL 508 (633)
Q Consensus 506 ~a~ 508 (633)
+|.
T Consensus 75 ~a~ 77 (77)
T 1uaw_A 75 VAF 77 (77)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 184
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.67 E-value=1.4e-16 Score=139.24 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=81.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
....+.++|||+|||+.+++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++.|||..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997754
No 185
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=133.98 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+++|+++|+++|++||.|.+|.+++++. |.++|||||+|.+.++|.+|+. ++|..++|+.|.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999876 9999999999999999999999 899999999999999
Q ss_pred ecC
Q 006726 293 AVP 295 (633)
Q Consensus 293 ~~~ 295 (633)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 186
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=131.91 Aligned_cols=85 Identities=24% Similarity=0.428 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.....++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999998877 899999999999999999999 89999999999999
Q ss_pred EEecCCCc
Q 006726 291 DWAVPKNI 298 (633)
Q Consensus 291 ~~~~~~~~ 298 (633)
.++.++..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 187
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-16 Score=134.16 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 283 (633)
.....++|||+|||+.+++++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456778999999999999999999999999998 699999888999999999999999999999999999999
Q ss_pred CCeeEEEEEecCCCc
Q 006726 284 GKRPIAVDWAVPKNI 298 (633)
Q Consensus 284 ~g~~i~v~~~~~~~~ 298 (633)
.|+.|.|.|+.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 188
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-16 Score=138.88 Aligned_cols=81 Identities=23% Similarity=0.396 Sum_probs=76.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..++++.++.++.++|||||+|.+.++|.+|++.|| |..|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 134 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN-----ESELFGRT 134 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST-----EEEETTEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCEECCEE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999 99999999
Q ss_pred EEEEEc
Q 006726 502 LTVLKA 507 (633)
Q Consensus 502 l~V~~a 507 (633)
|+|.+|
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 189
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.3e-17 Score=134.98 Aligned_cols=81 Identities=31% Similarity=0.515 Sum_probs=74.3
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~ 505 (633)
++|||+|||+++++++|+++|++||.|..|+++.+..+|.++|||||.|.+.+ |.+|+..|| |..++|++|.|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~-----g~~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD-----NTDFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC-----SSCCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC-----CCEECCeEEEEE
Confidence 58999999999999999999999999999999999989999999999999999 999999999 999999999999
Q ss_pred EccChhh
Q 006726 506 KALDKKL 512 (633)
Q Consensus 506 ~a~~k~~ 512 (633)
+|.++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2ki2_A 76 EANPKKS 82 (90)
T ss_dssp EC-----
T ss_pred EcCCCCC
Confidence 9987543
No 190
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=3.6e-17 Score=172.85 Aligned_cols=83 Identities=17% Similarity=0.413 Sum_probs=79.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|| |..|+|+.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD-----GKKIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC-----CCEECCEEEE
Confidence 35799999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred EEEccChh
Q 006726 504 VLKALDKK 511 (633)
Q Consensus 504 V~~a~~k~ 511 (633)
|.+|.++.
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998754
No 191
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=4.3e-16 Score=131.89 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45667899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 192
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=134.76 Aligned_cols=85 Identities=26% Similarity=0.403 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||..+++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
+.++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987653
No 193
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=130.01 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.+.. |.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345678999999999999999999999999999999999874 8899999999999999999999999999999999999
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
|+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 985
No 194
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=2.7e-16 Score=135.73 Aligned_cols=83 Identities=27% Similarity=0.409 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 973
No 195
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=2.4e-16 Score=137.34 Aligned_cols=80 Identities=20% Similarity=0.463 Sum_probs=76.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|+ .|| |..|+|+.|.|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~-----g~~~~g~~l~V 109 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD-----ETVFRGRTIKV 109 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT-----TCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC-----CCeECCeEEEE
Confidence 579999999999999999999999999999999999889999999999999999999999 899 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
.++.+.
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998754
No 196
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=132.67 Aligned_cols=86 Identities=23% Similarity=0.425 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce-eCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSP-VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-FGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~i~ 289 (633)
.....++|||+|||+.+|+++|+++|++ ||.|.+|.|+.+. +|.++|||||+|.+.++|.+|++.|||.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999987 89999999999999999999999999999 9999999
Q ss_pred EEEecCCCc
Q 006726 290 VDWAVPKNI 298 (633)
Q Consensus 290 v~~~~~~~~ 298 (633)
|.|+.++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999977654
No 197
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-15 Score=128.42 Aligned_cols=86 Identities=34% Similarity=0.517 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
......++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456778999999999999999999999999999999998753 38999999999999999999999999999999999
Q ss_pred EEecCCCc
Q 006726 291 DWAVPKNI 298 (633)
Q Consensus 291 ~~~~~~~~ 298 (633)
.|+.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99987654
No 198
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=5.9e-17 Score=171.20 Aligned_cols=86 Identities=19% Similarity=0.388 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987543
No 199
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=128.95 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 287 (633)
.....++|||+|||+.+++++|+ ++|++||.|.+|.++.++.+ +|||||+|.+.++|.+|++.|||..+.|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999987644 899999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 006726 288 IAVDWAVPKN 297 (633)
Q Consensus 288 i~v~~~~~~~ 297 (633)
|+|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 200
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=133.65 Aligned_cols=83 Identities=22% Similarity=0.438 Sum_probs=77.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE----
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL---- 497 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l---- 497 (633)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+. ++.++|||||+|.+.++|.+|+..|| |..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~~~~ 95 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN-----GKFIKTPP 95 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB-----TCCCCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC-----CCEEcCCc
Confidence 3446899999999999999999999999999999999998 89999999999999999999999999 8888
Q ss_pred ----cCeEEEEEEccCh
Q 006726 498 ----KGRQLTVLKALDK 510 (633)
Q Consensus 498 ----~gr~l~V~~a~~k 510 (633)
.|++|.|.||.++
T Consensus 96 ~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TSCCCSSCBEEEECCCS
T ss_pred cccCCCCceeEEccCCC
Confidence 6888999999864
No 201
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=131.48 Aligned_cols=84 Identities=21% Similarity=0.376 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568999999999999999999999999998888888888999999999999999999999999999999999999999
Q ss_pred ecCC
Q 006726 293 AVPK 296 (633)
Q Consensus 293 ~~~~ 296 (633)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 202
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=142.16 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
...++|||+|||+.+|+++|+++|+.|| .|.+|.|+.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3567999999999999999999999999 99999999998999999999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
++.++.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 997654
No 203
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=2.8e-16 Score=132.69 Aligned_cols=79 Identities=22% Similarity=0.191 Sum_probs=71.7
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcC-ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
...++|||+|||+++|+++|+++|++|| .|..+.++. +.++|||||+|.+.++|++|++.|| |..|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~ln-----g~~l~Gr~ 96 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLN-----NIEFRGSV 96 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTT-----TEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 3468999999999999999999999999 899988753 3479999999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 006726 502 LTVLKALDK 510 (633)
Q Consensus 502 l~V~~a~~k 510 (633)
|.|.++...
T Consensus 97 i~V~~a~~~ 105 (111)
T 2jvr_A 97 ITVERDDNP 105 (111)
T ss_dssp EEEEESCC-
T ss_pred EEEEECCCC
Confidence 999998754
No 204
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.2e-16 Score=126.27 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|+.| .|..|.++++ .+|+++|||||+|.+.++|.+|+. |||..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 8999999998 789999999999999999999999 99999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 997763
No 205
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-16 Score=132.93 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|++.|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 456678999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.+..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
No 206
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=5.3e-16 Score=127.38 Aligned_cols=84 Identities=31% Similarity=0.429 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|++||.|..+.++++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999874 78899999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.+..
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 997754
No 207
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=1e-16 Score=126.15 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 218 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ |||..++|++|.|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 8999999999999875
No 208
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=133.29 Aligned_cols=76 Identities=30% Similarity=0.460 Sum_probs=71.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
++|||+|||+.+|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999875 7899999999999999999999999999999999999775
Q ss_pred C
Q 006726 297 N 297 (633)
Q Consensus 297 ~ 297 (633)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 209
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=133.19 Aligned_cols=84 Identities=31% Similarity=0.550 Sum_probs=79.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCc
Q 006726 295 PKNI 298 (633)
Q Consensus 295 ~~~~ 298 (633)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7654
No 210
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=131.72 Aligned_cols=80 Identities=13% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
.+.++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|+.. +..|+|++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~---~~~i~Gr~l 83 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADV---PVYIAGQQA 83 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS---CCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC---CceECCEEE
Confidence 44689999999999999999999999999999987643 799999999999999999988610 356999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.||..+.
T Consensus 84 ~V~~a~~~~ 92 (104)
T 1wex_A 84 FFNYSTSKR 92 (104)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCcc
Confidence 999998654
No 211
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=130.49 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=73.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 83 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN-----KREIEGRAI 83 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS-----SEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC-----CCEeCCeEE
Confidence 346899999999999999999999999988 45666 578999999999999999999999999 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
+|.++.++.
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999998753
No 212
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-16 Score=128.64 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=77.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++++. +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 45567899999999999999999999999999999999874 3378999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987653
No 213
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=132.10 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456678999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9987654
No 214
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-17 Score=136.82 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=76.1
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|++ || |..|.|++|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~-----g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT-----GLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG-----GCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC-----CcEECCcEE
Confidence 34689999999999999999999999999988 677787789999999999999999999998 99 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.+|.++.
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 999998764
No 215
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=6.8e-17 Score=127.20 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=71.5
Q ss_pred EEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEEEE
Q 006726 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (633)
Q Consensus 427 ~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V~~ 506 (633)
+|||+|||+++|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. + +..++|++|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~-----~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-K-----YHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-S-----SCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-C-----CCeECCEEEEEEE
Confidence 589999999999999999999999999999999998999999999999999999999985 7 8999999999988
Q ss_pred c
Q 006726 507 A 507 (633)
Q Consensus 507 a 507 (633)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 6
No 216
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.3e-16 Score=130.57 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC---
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--- 499 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--- 499 (633)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|| |..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~~ 80 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD-----NTKFRSHEG 80 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSS-----SEEEECTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHC-----cCCccCCcC
Confidence 34689999999999999999999999999999998865 899999999999999999999 999999
Q ss_pred --eEEEEEEccChh
Q 006726 500 --RQLTVLKALDKK 511 (633)
Q Consensus 500 --r~l~V~~a~~k~ 511 (633)
++|.|.+|.++.
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999998754
No 217
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=6.8e-17 Score=136.66 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=77.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCc---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGE---VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
....++|||+|||+++|+++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|.+|+. +| +..|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~-----~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KH-----RMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TT-----TCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hC-----cceeC
Confidence 345789999999999999999999999998 89999999986 9999999999999999999999 99 99999
Q ss_pred CeEEEEEEccChhh
Q 006726 499 GRQLTVLKALDKKL 512 (633)
Q Consensus 499 gr~l~V~~a~~k~~ 512 (633)
||.|.|.++.+++.
T Consensus 81 gr~i~V~~a~~~~~ 94 (107)
T 2lmi_A 81 QRYVEVYEINNEDV 94 (107)
T ss_dssp SSCCCCEECCHHHH
T ss_pred CeEEEEEECCHHHH
Confidence 99999999987653
No 218
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=129.30 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999988765
No 219
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=1.9e-16 Score=130.95 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999998
Q ss_pred ec
Q 006726 293 AV 294 (633)
Q Consensus 293 ~~ 294 (633)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 220
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=131.43 Aligned_cols=85 Identities=22% Similarity=0.416 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 006726 212 SKTQKWKLIIRNIPFKA------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 285 (633)
.....++|||+|||+.+ |+++|+++|++||.|.+|.+++ .+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 7899999999999999999983 578999999999999999999999999999999
Q ss_pred e-eEEEEEecCCCc
Q 006726 286 R-PIAVDWAVPKNI 298 (633)
Q Consensus 286 ~-~i~v~~~~~~~~ 298 (633)
+ +|.|.++.....
T Consensus 89 ~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 89 QHTFRVNLFTDFDK 102 (105)
T ss_dssp TCEEEEECSCCCCC
T ss_pred CceEEEEEcchHhh
Confidence 8 999999976543
No 221
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=9.8e-16 Score=136.32 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=82.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCCcc
Q 006726 292 WAVPKNIY 299 (633)
Q Consensus 292 ~~~~~~~~ 299 (633)
|+.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 222
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=5.1e-16 Score=131.62 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|+.||.|.+|.+++++.+|.++|||||+|.+.++|.+|+..+ |..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999888999999999999999999999975 699999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
++.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998764
No 223
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=132.29 Aligned_cols=84 Identities=25% Similarity=0.461 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccC-CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.....++|||+|||+.+++++|+++|+.|| |.+|.++++. .+|+++|||||+|.+.++|.+|+ .|||..++|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999987 58999999999999999999999 79999999999999
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.++.+++
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997753
No 224
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=132.15 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEcccCCCC---CceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTDTG---LSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 285 (633)
.....++|||+|||+.+++++|+ ++|++||.|..|.++++..++ +++|||||+|.+.++|.+|++.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34567899999999999999999 999999999999999886643 566999999999999999999999999999
Q ss_pred eeEEEEEecCCC
Q 006726 286 RPIAVDWAVPKN 297 (633)
Q Consensus 286 ~~i~v~~~~~~~ 297 (633)
+.|.|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 225
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=128.81 Aligned_cols=84 Identities=27% Similarity=0.392 Sum_probs=78.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44567899999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred EecCC
Q 006726 292 WAVPK 296 (633)
Q Consensus 292 ~~~~~ 296 (633)
|+.+.
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98754
No 226
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=132.48 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=71.0
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 422 DELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
..++++|||+|||++ +|+++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|+..||.. +..|+||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~---~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKK---ALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHS---CCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccC---CceECCE
Confidence 445789999999998 99999999999999999998863 4899999999999999999988611 4669999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.+|..+.
T Consensus 93 ~l~V~~a~~~~ 103 (112)
T 1x4f_A 93 CVKVDLSEKYK 103 (112)
T ss_dssp CCEEEEECSCS
T ss_pred EEEEEECcccc
Confidence 99999997654
No 227
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=136.65 Aligned_cols=86 Identities=23% Similarity=0.301 Sum_probs=74.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
..+.++|||+|||+++|+++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~ 96 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN-----GYKLYGKI 96 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST-----TCBCSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC-----CCEeCCcE
Confidence 3457899999999999999999999999999543333333378899999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 97 l~v~~a~~~~~ 107 (115)
T 2cpx_A 97 LVIEFGKNKKQ 107 (115)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEEccCCCC
Confidence 99999987643
No 228
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=4.5e-16 Score=135.96 Aligned_cols=87 Identities=26% Similarity=0.556 Sum_probs=81.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9987653
No 229
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=129.08 Aligned_cols=83 Identities=28% Similarity=0.284 Sum_probs=75.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|+.|+ .|.++.+..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 83 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME-----DGEIDGNK 83 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCeECCeE
Confidence 34568999999999999999999999884 56788888899999999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999987643
No 230
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=127.68 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=67.5
Q ss_pred cEEEecCCCCCC------CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 426 NTIFICNLPFDL------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 426 ~~lfV~nLp~~~------te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
++|||+|||+.+ |+++|+++|++||.|..|.++ ..+|.++|||||+|.+.++|.+|+..|| |..|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~ln-----g~~~~g 74 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD-----GYKLDK 74 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSS-----SCCCSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhc-----CcccCC
Confidence 699999999999 779999999999999999877 3589999999999999999999999999 999999
Q ss_pred e-EEEE
Q 006726 500 R-QLTV 504 (633)
Q Consensus 500 r-~l~V 504 (633)
+ +|+|
T Consensus 75 ~~~l~V 80 (81)
T 2krb_A 75 QHTFRV 80 (81)
T ss_dssp SSCCCC
T ss_pred ceeEEe
Confidence 9 8876
No 231
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=127.08 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999998 5889999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987654
No 232
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=136.29 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=74.7
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCce----EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEV----VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V----~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
..++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+|+.. | +..|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~-----~~~l~g 94 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-H-----KDLLGK 94 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-T-----TEESSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-C-----CCeeCC
Confidence 35799999999999999999999999975 689999884 899999999999999999999986 8 999999
Q ss_pred eEEEEEEccChhh
Q 006726 500 RQLTVLKALDKKL 512 (633)
Q Consensus 500 r~l~V~~a~~k~~ 512 (633)
|.|.|..+.+++.
T Consensus 95 R~i~V~~a~~~e~ 107 (123)
T 2dha_A 95 RYIELFRSTAAEV 107 (123)
T ss_dssp CEECCEEECHHHH
T ss_pred eEEEEEECCHHHH
Confidence 9999999876543
No 233
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=124.43 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=70.4
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhc-CCCCCCCeEEcCe
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS-KTTSGLGIFLKGR 500 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~l-n~~~~~g~~l~gr 500 (633)
....++|||+|||+.+|+++|+++|++||.|..|+++.+ +|||||+|.+.++|.+|+..| + |..++|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~-----~~~~~g~ 77 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFN-----KLIVNGR 77 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTT-----TCEETTE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcC-----CeeECCC
Confidence 344689999999999999999999999999999988853 799999999999999999999 8 9999999
Q ss_pred EEEEEEcc
Q 006726 501 QLTVLKAL 508 (633)
Q Consensus 501 ~l~V~~a~ 508 (633)
+|.|.||+
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 234
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.6e-16 Score=130.98 Aligned_cols=85 Identities=34% Similarity=0.516 Sum_probs=78.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
......++|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 355677899999999999999999999999999999999874 458999999999999999999999999999999999
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.++.++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9997753
No 235
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=130.75 Aligned_cols=86 Identities=31% Similarity=0.421 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEc-ccCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeeE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIP-HNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPI 288 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i 288 (633)
....++|||+|||+.+++++|+++|+.||. |..|.++ .+..+|.++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 777888999999999999999999999996 589999999
Q ss_pred EEEEecCCCc
Q 006726 289 AVDWAVPKNI 298 (633)
Q Consensus 289 ~v~~~~~~~~ 298 (633)
.|.|+.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 236
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=128.58 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|++||.+ .|.|+.++ +|+++|||||+|.+.++|++||+ +|+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999955 89999987 89999999999999999999995 79999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
++.+..
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 237
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=9.9e-16 Score=126.86 Aligned_cols=77 Identities=19% Similarity=0.434 Sum_probs=70.9
Q ss_pred CCCCCcEEEecCCCC-CCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 421 EDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
.....++|||+|||+ ++++++|+++|++||.|..|++ ++|||||+|.+.++|.+|+..|| |..++|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g 84 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXES-----QEMNFG 84 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHT-----TSEETT
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcC-----CCEECC
Confidence 345578999999998 9999999999999999999987 28999999999999999999999 999999
Q ss_pred eEEEEEEccCh
Q 006726 500 RQLTVLKALDK 510 (633)
Q Consensus 500 r~l~V~~a~~k 510 (633)
++|.|.+|.++
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998764
No 238
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=132.76 Aligned_cols=87 Identities=22% Similarity=0.375 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EecCCCcc
Q 006726 292 WAVPKNIY 299 (633)
Q Consensus 292 ~~~~~~~~ 299 (633)
|+.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99876543
No 239
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=128.25 Aligned_cols=85 Identities=28% Similarity=0.425 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.....++|||+|||+.+|+++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. |+..++|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 888887 6899999999999999999999997 999999999999
Q ss_pred EEecCCCc
Q 006726 291 DWAVPKNI 298 (633)
Q Consensus 291 ~~~~~~~~ 298 (633)
.++.++..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99976543
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-16 Score=127.83 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc--eeCCeeE
Q 006726 212 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ--KFGKRPI 288 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i 288 (633)
...+.++|||+|||+ .+|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|++.||+. .|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345678999999999 9999999999999999999999864 489999999999999999998864 5999999
Q ss_pred EEEEecCCC
Q 006726 289 AVDWAVPKN 297 (633)
Q Consensus 289 ~v~~~~~~~ 297 (633)
+|.|+.+..
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999997654
No 241
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-16 Score=125.59 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=73.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++.++ ..++|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999988 9999999999987
No 242
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.9e-16 Score=126.49 Aligned_cols=77 Identities=25% Similarity=0.377 Sum_probs=71.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH-----HYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT-----TCBCSSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc-----CCccCCcEE
Confidence 346899999999999999999999999999999886 6899999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
+|.++.++..
T Consensus 73 ~v~~a~~~~~ 82 (90)
T 2dnq_A 73 NVEASKNKSK 82 (90)
T ss_dssp EEECSSCCCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 243
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=2.5e-16 Score=132.05 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=75.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~ 503 (633)
..++|||+|||+++|+++|+++|++||.|..|+++.+. +|.++|||||+|.+.++|.+|+. + +..|+|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~-----~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--S-----QINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--C-----CCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--C-----CCeECCEEEE
Confidence 35899999999999999999999999999999999998 99999999999999999999998 8 9999999999
Q ss_pred EEEccChhh
Q 006726 504 VLKALDKKL 512 (633)
Q Consensus 504 V~~a~~k~~ 512 (633)
|.++.++..
T Consensus 80 v~~a~~~~~ 88 (102)
T 2xs2_A 80 LGPAIRKQN 88 (102)
T ss_dssp EEEEEECC-
T ss_pred EEECCcCcc
Confidence 999987644
No 244
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.4e-16 Score=130.29 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=71.6
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|.+++++ .++|||||+|.+.++|.+|+..|| |..|+|++|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA-----NFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT-----TCEETTEEC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEE
Confidence 346899999999999999999999999999999887 358999999999999999999999 999999999
Q ss_pred EEEEccCh
Q 006726 503 TVLKALDK 510 (633)
Q Consensus 503 ~V~~a~~k 510 (633)
+|.||.++
T Consensus 94 ~V~~a~~~ 101 (101)
T 2la4_A 94 RTGWGKER 101 (101)
T ss_dssp CCCBCCCC
T ss_pred EEEeccCC
Confidence 99998764
No 245
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=129.91 Aligned_cols=84 Identities=25% Similarity=0.521 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--------
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-------- 283 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-------- 283 (633)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+..|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCeeEEEEEecCC
Q 006726 284 GKRPIAVDWAVPK 296 (633)
Q Consensus 284 ~g~~i~v~~~~~~ 296 (633)
.+++|.|.|+.|+
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999764
No 246
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-15 Score=124.64 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh--CCceeCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~ 289 (633)
...+.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| ++..+.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988763 799999999999999999977 46789999999
Q ss_pred EEEecCCCc
Q 006726 290 VDWAVPKNI 298 (633)
Q Consensus 290 v~~~~~~~~ 298 (633)
|.|+.++..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999987654
No 247
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.3e-16 Score=130.56 Aligned_cols=81 Identities=31% Similarity=0.497 Sum_probs=74.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 296 (633)
++|||+|||..+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.+ |.+|+..|||..++|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999999876
Q ss_pred Cc
Q 006726 297 NI 298 (633)
Q Consensus 297 ~~ 298 (633)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=132.75 Aligned_cols=82 Identities=26% Similarity=0.396 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|+.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999888999999999999999999999 899999999999999997
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 249
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.7e-15 Score=137.65 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998754
No 250
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.9e-16 Score=130.66 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=73.9
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|+++.+ +|||||.|.+.++|.+|+..|| |..|+|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVN-----GTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcC-----CCEECCcE
Confidence 344689999999999999999999999999999998865 8999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.||.++..
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 99999987643
No 251
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.3e-16 Score=129.54 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=72.0
Q ss_pred cEEEecCC----CCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecC----HHH----HHHHHH--hcCCCC
Q 006726 426 NTIFICNL----PFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKT----VEA----ATAAVS--ASKTTS 491 (633)
Q Consensus 426 ~~lfV~nL----p~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~----~e~----A~~A~~--~ln~~~ 491 (633)
+.|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .+|
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln--- 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS--- 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT---
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc---
Confidence 68999999 9999999999999999999999999999999999999999996 433 889988 789
Q ss_pred CCCeEEcCeEEEEEEccC
Q 006726 492 GLGIFLKGRQLTVLKALD 509 (633)
Q Consensus 492 ~~g~~l~gr~l~V~~a~~ 509 (633)
|..|+||+|+|.+-..
T Consensus 80 --g~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 80 --GCFIMGFKFEVILNKH 95 (136)
T ss_dssp --CEEETTEEEEEEECCT
T ss_pred --CCeecCcEEEEEECcc
Confidence 9999999999998543
No 252
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=127.02 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc--C
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK--G 499 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~--g 499 (633)
..+.++|||+|||+++|+++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|| |..|. |
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~-----g~~~~~~g 82 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMR-----GFPLGGPD 82 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHT-----TCBCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHC-----CCEeCCCC
Confidence 344689999999999999999999999999999988643 7899999999999999999999 99999 9
Q ss_pred eEEEEEEccChh
Q 006726 500 RQLTVLKALDKK 511 (633)
Q Consensus 500 r~l~V~~a~~k~ 511 (633)
++|.|.||.++.
T Consensus 83 ~~l~V~~a~~~~ 94 (97)
T 1why_A 83 RRLRVDFAKSGP 94 (97)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998753
No 253
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.2e-16 Score=130.14 Aligned_cols=82 Identities=26% Similarity=0.421 Sum_probs=75.2
Q ss_pred CCCcEEEecCCCCCCCHHHHH----HHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc
Q 006726 423 ELQNTIFICNLPFDLDNEEVK----QRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~ 498 (633)
.++++|||+|||+++|+++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|.+|+..|| |..|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~ 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ-----GFPFY 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHT-----TCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhC-----CCEEC
Confidence 446899999999999999999 9999999999998763 46789999999999999999999999 99999
Q ss_pred CeEEEEEEccChhh
Q 006726 499 GRQLTVLKALDKKL 512 (633)
Q Consensus 499 gr~l~V~~a~~k~~ 512 (633)
|++|.|.+|.++..
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 99999999987654
No 254
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=124.95 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhc--CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
....++|||+|||+.+|+++|+++|++| |.|..|+++ +|||||+|.+.++|.+|+..|| |..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g 78 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN-----GKVLDG 78 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS-----SEEETT
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC-----CCEeCC
Confidence 3446899999999999999999999999 999998763 7899999999999999999999 999999
Q ss_pred eEEEEEEccChh
Q 006726 500 RQLTVLKALDKK 511 (633)
Q Consensus 500 r~l~V~~a~~k~ 511 (633)
++|.|.+|.++.
T Consensus 79 ~~l~v~~a~~~~ 90 (99)
T 2cpd_A 79 SPIEVTLAKPVD 90 (99)
T ss_dssp EEEEEECCCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998754
No 255
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=4.8e-16 Score=150.00 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcC--ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFG--EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
..++|||+|||+.+|+++|+++|++|| .|..|+|++|+.+++++|||||+|.+.++|.+||..|| |..|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln-----g~~~~Gr~ 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP-----KRELHGQN 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST-----TSCBTTBC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC-----CCeECCEE
Confidence 467999999999999999999999999 99999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.+...
T Consensus 142 l~V~~a~~~~~ 152 (229)
T 3q2s_C 142 PVVTPVNKQFL 152 (229)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEECCCCcc
Confidence 99999987653
No 256
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.4e-16 Score=128.35 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=72.7
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..|+++.+ +|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~-----g~~~~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELD-----NMPLRGKQ 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHT-----TCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhC-----CCEeCCce
Confidence 344689999999999999999999999999999988743 7999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|+|.+|.++.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpj_A 81 LRVRFACHSA 90 (99)
T ss_dssp CEEEESSCCS
T ss_pred EEEEEcCCCC
Confidence 9999998754
No 257
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.6e-16 Score=127.43 Aligned_cols=80 Identities=26% Similarity=0.407 Sum_probs=72.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 85 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQ-----GLRLGTDT 85 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHT-----TCCSSSSC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhC-----CCEECCcE
Confidence 34468999999999999999999999999997 666644 679999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 86 l~V~~a~~~~ 95 (97)
T 2e5j_A 86 LRVALARQQR 95 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 258
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=3e-16 Score=137.97 Aligned_cols=85 Identities=21% Similarity=0.405 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eeCC
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ----KFGK 285 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g 285 (633)
.....++|||+|||+.+|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|||. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999977 99999998999999999999999 999999999999 9999
Q ss_pred eeEEEEEecCCC
Q 006726 286 RPIAVDWAVPKN 297 (633)
Q Consensus 286 ~~i~v~~~~~~~ 297 (633)
+.|.|.|+.++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998754
No 259
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=128.94 Aligned_cols=82 Identities=18% Similarity=0.348 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~ 289 (633)
...+.++|||+|||+.+|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..+.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999873 69999999999999999998874 589999999
Q ss_pred EEEecCCCcc
Q 006726 290 VDWAVPKNIY 299 (633)
Q Consensus 290 v~~~~~~~~~ 299 (633)
|.|+.++...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 260
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=123.74 Aligned_cols=77 Identities=18% Similarity=0.356 Sum_probs=71.2
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|| |..|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLD-----NTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHT-----TEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhC-----CCeeCCcE
Confidence 3446899999999999999999999999999999886 4599999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999998754
No 261
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=131.42 Aligned_cols=83 Identities=19% Similarity=0.376 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999999988899999999999999999999997 9999999999999998
Q ss_pred CCCc
Q 006726 295 PKNI 298 (633)
Q Consensus 295 ~~~~ 298 (633)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8754
No 262
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1e-15 Score=129.44 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=72.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~ 94 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVH-----GKSFANQP 94 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 4457899999999999999999999999999999886 7899999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999998754
No 263
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=132.18 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLV-WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.....++|||+|||+.+|+++|+++|+.||.| ..|.|+.+. +|+++|||||+|.+.++|.+||+. |+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999987 899999999999999999999997 999999999999
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997754
No 264
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=9.6e-16 Score=126.93 Aligned_cols=80 Identities=21% Similarity=0.376 Sum_probs=72.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 82 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ-----GAEIDGRS 82 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT-----EEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC-----CCEECCeE
Confidence 3446899999999999999999999999988765 2468899999999999999999999999 99999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|.|.+|.++.
T Consensus 83 l~v~~a~~~~ 92 (96)
T 1fjc_A 83 VSLYYTGEKG 92 (96)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 265
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=132.48 Aligned_cols=85 Identities=15% Similarity=0.319 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 287 (633)
...+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|..|+..|||..+.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999998864 5789999999999999999999999999999999
Q ss_pred EEEEEecCCCcc
Q 006726 288 IAVDWAVPKNIY 299 (633)
Q Consensus 288 i~v~~~~~~~~~ 299 (633)
|.|.|+.++...
T Consensus 102 l~V~~a~~~~~~ 113 (127)
T 2a3j_A 102 LVITFSETPQSQ 113 (127)
T ss_dssp CEEEECCCCCHH
T ss_pred EEEEEccCcchh
Confidence 999999876543
No 266
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=127.65 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|++.||+..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999653 5589999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9977643
No 267
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=125.93 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc--eeCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ--KFGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~ 289 (633)
...+.++|||+|||+.+++++|+++|++||.|..|.+++ .+|||||+|.+.++|.+|++.|++. .+.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345678999999999999999999999999999999876 3699999999999999999988764 58999999
Q ss_pred EEEecCCCc
Q 006726 290 VDWAVPKNI 298 (633)
Q Consensus 290 v~~~~~~~~ 298 (633)
|.|+.++..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999987654
No 268
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.7e-15 Score=127.09 Aligned_cols=77 Identities=22% Similarity=0.370 Sum_probs=71.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|| |..|.|++|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l 75 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN-----GKDLEGENI 75 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT-----TEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC-----CCccCCCEE
Confidence 346899999999999999999999999999999875 5699999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
.|.+|.++..
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9999987654
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=124.92 Aligned_cols=82 Identities=24% Similarity=0.527 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.| .++.+ .+++++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45567899999999999999999999999977 56665 578899999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 270
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=134.97 Aligned_cols=82 Identities=30% Similarity=0.446 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ee
Q 006726 292 WA 293 (633)
Q Consensus 292 ~~ 293 (633)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 271
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=4.4e-16 Score=134.31 Aligned_cols=81 Identities=23% Similarity=0.348 Sum_probs=72.9
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceE--EEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVV--SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~--~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
...++|||+|||+++|+++|+++|++| .|. .|+|+.|+. |+++|||||+|.++++|.+|+.. + +..|+||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~-----~~~l~gR 111 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-H-----KERIGHR 111 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-T-----TCCBTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-C-----CCEECCE
Confidence 346799999999999999999999999 566 899999986 99999999999999999999975 7 7999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
.|.|.++..++
T Consensus 112 ~I~V~~a~~~e 122 (126)
T 2hgm_A 112 YIEVFKSSQEE 122 (126)
T ss_dssp CCCCEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999986543
No 272
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=3.8e-17 Score=140.54 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=79.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCe
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI 495 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~--------v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~ 495 (633)
..++|||+|||+++|+++|+++|++||.|.. |+++.++.++.++|||||+|.+.++|.+|+..|| |.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~-----g~ 80 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD-----GK 80 (116)
Confidence 4689999999999999999999999999999 8999998899999999999999999999999999 99
Q ss_pred EEcCeEEEEEEccChhh
Q 006726 496 FLKGRQLTVLKALDKKL 512 (633)
Q Consensus 496 ~l~gr~l~V~~a~~k~~ 512 (633)
.|.|++|.|.+|.++..
T Consensus 81 ~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRAD 97 (116)
Confidence 99999999999987654
No 273
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=140.87 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=74.0
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEE--E---eecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV--P---VLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~--i---~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~ 496 (633)
..+.++|||+|||+.+|+++|+++|++||.|..+. + +....+|.++|||||.|.+.++|.+|+..|| |..
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ln-----g~~ 116 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEAN-----GYV 116 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHT-----TBE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhC-----CCE
Confidence 34568999999999999999999999999987641 1 1112368999999999999999999999999 999
Q ss_pred EcCeEEEEEEccChhh
Q 006726 497 LKGRQLTVLKALDKKL 512 (633)
Q Consensus 497 l~gr~l~V~~a~~k~~ 512 (633)
|.|++|.|.+|.++..
T Consensus 117 ~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 117 LFGKPMVVQFARSARP 132 (143)
T ss_dssp ETTEECEEEECCCSCC
T ss_pred eCCcEEEEEECCCCCC
Confidence 9999999999987543
No 274
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=9.9e-16 Score=131.79 Aligned_cols=83 Identities=19% Similarity=0.353 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
....++|||+|||+++|+++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|.+||+ |||..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999999 89999998875 9999999999999999999999 899999999999
Q ss_pred EEEecCCC
Q 006726 290 VDWAVPKN 297 (633)
Q Consensus 290 v~~~~~~~ 297 (633)
|.++.++.
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99996543
No 275
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=7e-16 Score=135.35 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 288 (633)
.....++|||+|||+++|+++|+++|++||. |.+|.|++++. |+++|||||+|.+.++|++||+ |||..|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999876 9999999999999999999999 99999999999
Q ss_pred EEEEecCC
Q 006726 289 AVDWAVPK 296 (633)
Q Consensus 289 ~v~~~~~~ 296 (633)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 276
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=1.5e-15 Score=132.15 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+.+|+++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999998889999999999999999999999 799999999999999987
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 277
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=124.23 Aligned_cols=73 Identities=26% Similarity=0.512 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe-eE
Q 006726 216 KWKLIIRNIPFKA------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PI 288 (633)
Q Consensus 216 ~~~l~v~nlp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i 288 (633)
+++|||+|||+.+ ++++|+++|++||.|.++.+++ .+|+++|||||+|.+.++|.+|++.|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 7899999999999999999884 5789999999999999999999999999999999 88
Q ss_pred EE
Q 006726 289 AV 290 (633)
Q Consensus 289 ~v 290 (633)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 278
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=124.69 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=76.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
......++|||+|||+.+++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+||+.|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456778999999999999999999999885 5677777778999999999999999999999999999999999999
Q ss_pred EEecCCCc
Q 006726 291 DWAVPKNI 298 (633)
Q Consensus 291 ~~~~~~~~ 298 (633)
.|+.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 279
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-16 Score=134.70 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999886666666789999999999999999999999 999999999999999
Q ss_pred ecCCC
Q 006726 293 AVPKN 297 (633)
Q Consensus 293 ~~~~~ 297 (633)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 280
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=122.78 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|..|+++ ++||||+|.+.++|.+|+..|| |..|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~-----g~~~~g~~ 72 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLN-----GKEVKGKR 72 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhC-----CCEECCcE
Confidence 3446899999999999999999999999999999886 4599999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 006726 502 LTVLKALDK 510 (633)
Q Consensus 502 l~V~~a~~k 510 (633)
|.|.++.++
T Consensus 73 l~v~~a~~~ 81 (90)
T 2dnp_A 73 INVELSTKG 81 (90)
T ss_dssp CEEEESCCC
T ss_pred EEEEECCCC
Confidence 999999865
No 281
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.5e-15 Score=128.28 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
....++|||+|||+++++++|+++|++|| .|..+.++.. .++|||||+|.+.++|++||+.|||..+.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44568999999999999999999999999 8999988643 388999999999999999999999999999999999
Q ss_pred EecCC
Q 006726 292 WAVPK 296 (633)
Q Consensus 292 ~~~~~ 296 (633)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98654
No 282
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=127.95 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+++|+++|+++|++| .|.+|.|+.++. |+++|||||+|.+.++|.+|| .+|+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 799999999864 999999999999999999999 589999999999999886
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
++.
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 643
No 283
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=121.63 Aligned_cols=79 Identities=30% Similarity=0.382 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 44567899999999999999999999999999999986 4799999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 284
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=127.65 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeeEE
Q 006726 213 KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPIA 289 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~ 289 (633)
..+.++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|..|++.|++ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999975 579999999999999999998864 568999999
Q ss_pred EEEecCCCc
Q 006726 290 VDWAVPKNI 298 (633)
Q Consensus 290 v~~~~~~~~ 298 (633)
|.|+.++..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976653
No 285
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=120.46 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF-NGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v 290 (633)
.....++|||+|||..+++++|+++|++||.|..+.+++ ++|||||+|.+.++|.+|++.| +|..+.|++|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 456678999999999999999999999999999999986 4799999999999999999998 999999999999
Q ss_pred EEec
Q 006726 291 DWAV 294 (633)
Q Consensus 291 ~~~~ 294 (633)
.|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 286
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=2.6e-16 Score=138.48 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=74.4
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|||+++|+++|+++|++|| |..|+|++++. |+++|||||+|.+.++|.+|| .+| +..|+||.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~-----g~~l~gR~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKD-----RANMQHRYI 115 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCC-----SCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhC-----CCEECCEEE
Confidence 3468999999999999999999999999 66999999975 999999999999999999999 889 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.++.+++
T Consensus 116 ~V~~a~~~~ 124 (139)
T 2hgn_A 116 ELFLNSTTG 124 (139)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 999987654
No 287
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9.5e-16 Score=130.37 Aligned_cols=75 Identities=20% Similarity=0.095 Sum_probs=70.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..|.++. ++|||||+|.+.++|.+|+..|| |..|+|++|.|
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~-----g~~~~g~~l~V 78 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLA-----YSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHT-----TCBSSSSBCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhC-----CCEECCeEEEE
Confidence 57999999999999999999999999999998763 58899999999999999999999 99999999999
Q ss_pred EEccCh
Q 006726 505 LKALDK 510 (633)
Q Consensus 505 ~~a~~k 510 (633)
.||...
T Consensus 79 ~~a~~~ 84 (111)
T 1whx_A 79 EWAPIG 84 (111)
T ss_dssp EEEETT
T ss_pred EECCCC
Confidence 999754
No 288
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=125.27 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-----e
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-----R 286 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 286 (633)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999875 899999999999999999999999999 9
Q ss_pred eEEEEEecCCCc
Q 006726 287 PIAVDWAVPKNI 298 (633)
Q Consensus 287 ~i~v~~~~~~~~ 298 (633)
.|.|.++.++..
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 999999987643
No 289
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=2.2e-15 Score=139.27 Aligned_cols=85 Identities=21% Similarity=0.365 Sum_probs=79.6
Q ss_pred CCCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
....+++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|| |..|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ln-----g~~l~Gr 157 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK-----GVPLDGR 157 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHST-----TCBCSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhC-----CCEECCE
Confidence 34457899999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.+|....
T Consensus 158 ~l~V~~a~~~~ 168 (177)
T 2f3j_A 158 PMDIQLVASQI 168 (177)
T ss_dssp BCEEEEESSGG
T ss_pred EEEEEEecCCC
Confidence 99999998653
No 290
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=124.35 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
...+.++|||+|||+.+++++|+++|++||.|..|.+++ ++|||||+|.+.++|.+|++.|||..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 456678999999999999999999999999999999975 46899999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987653
No 291
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.7e-15 Score=125.64 Aligned_cols=84 Identities=24% Similarity=0.409 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIK----DMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 287 (633)
...+.++|||+|||..+++++|+ ++|++||.|..|.+++ +|.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999999874 4678899999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q 006726 288 IAVDWAVPKNI 298 (633)
Q Consensus 288 i~v~~~~~~~~ 298 (633)
|.|.|+.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987643
No 292
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.4e-15 Score=123.15 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC--CeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~ 289 (633)
...+.++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|||..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998753 689999999999999999999999999 99999
Q ss_pred EEEecCCC
Q 006726 290 VDWAVPKN 297 (633)
Q Consensus 290 v~~~~~~~ 297 (633)
|.|+.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 293
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=125.09 Aligned_cols=79 Identities=20% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEE-EEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
..++|||+|||+.+|+++|+++|++||.|..| .++.++.+ |.|||+|.+.++|.+|+..|| |..|+|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l 84 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLN-----GFQLENFTL 84 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHT-----TCBCSSCBC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhC-----CCEECCcEE
Confidence 36899999999999999999999999999999 47777543 449999999999999999999 999999999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
.|.+|.+++
T Consensus 85 ~V~~a~~~~ 93 (96)
T 2e44_A 85 KVAYIPDEM 93 (96)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCccc
Confidence 999998874
No 294
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=125.11 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=68.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCc-eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCC-eEEcCeE
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG-IFLKGRQ 501 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g-~~l~gr~ 501 (633)
..++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..|| | ..|+|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~-----g~~~~~g~~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLS-----GKVELHGKI 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHT-----TTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHcc-----CCeeECCEE
Confidence 4689999999999999999999999999 6665542 48999999999999999999999 9 9999999
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|+|.+|.++.
T Consensus 75 l~v~~a~~~~ 84 (93)
T 2cqh_A 75 MEVDYSVSKK 84 (93)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998764
No 295
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=8.1e-16 Score=130.01 Aligned_cols=84 Identities=15% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL---VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 288 (633)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. +||..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 4566789999999999999999999999998 89999999876 9999999999999999999999 89999999999
Q ss_pred EEEEecCCC
Q 006726 289 AVDWAVPKN 297 (633)
Q Consensus 289 ~v~~~~~~~ 297 (633)
.|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987653
No 296
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=5.3e-16 Score=122.02 Aligned_cols=75 Identities=19% Similarity=0.387 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 218 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999995 999999999999875
No 297
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=3.8e-15 Score=121.05 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=63.6
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ ++.. ...++|++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~---~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGE---DLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTC---EEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCC---CcccCCEE
Confidence 344689999999999999999999999999999998864 69999999999999984 3410 35567999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.+|.++..
T Consensus 76 v~v~~a~~k~~ 86 (89)
T 3d2w_A 76 VHISNAEPKHN 86 (89)
T ss_dssp EEEEECC----
T ss_pred EEEEEcCCCCc
Confidence 99999987643
No 298
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.58 E-value=4.8e-16 Score=136.82 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=74.2
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCeecCeEEEEcc--CCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcc
Q 006726 173 DASAVLYTTVKSACASVALLHQKEIKGGTVWARQ--LGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 250 (633)
Q Consensus 173 g~afV~F~~~~~A~~A~~~l~~~~~~g~~i~v~~--~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~ 250 (633)
|+||.+|.-++-+..++..+... ..|....-.. ..........++|||+|||+++|+++|+++|++|| |..|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 45677777776666665543322 2222211110 01112345567999999999999999999999999 66999999
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecCCC
Q 006726 251 NTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (633)
Q Consensus 251 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 297 (633)
++. |+++|||||+|.+.++|++|| .+|+..|+|+.|.|.++.+..
T Consensus 80 d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 80 GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 875 999999999999999999999 689999999999999987654
No 299
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=4.8e-15 Score=126.00 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=70.1
Q ss_pred CCCcEEEecCCCCC-CCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 423 ELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 423 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
...++|||+|||+. +|+++|+++|++||.|..|.+ ++|||||+|.+.++|.+|+..|| |..|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~ 91 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGEN-----GRVLAGQT 91 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHT-----TCEETTEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcC-----CCEECCeE
Confidence 34689999999999 999999999999999999987 48999999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 006726 502 LTVLKALDK 510 (633)
Q Consensus 502 l~V~~a~~k 510 (633)
|.|.+|.++
T Consensus 92 l~V~~a~~~ 100 (110)
T 1wf1_A 92 LDINMAGEP 100 (110)
T ss_dssp CCEEESCCC
T ss_pred EEEEECCCC
Confidence 999999754
No 300
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.5e-15 Score=125.67 Aligned_cols=77 Identities=19% Similarity=0.391 Sum_probs=70.4
Q ss_pred CCCCcEEEecCCCC-CCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 422 DELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 422 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
..+.++|||+|||+ .+|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|| |..+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~ 73 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECES-----QEMNFGK 73 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHT-----CSSCBTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC-----CCeeCCc
Confidence 34478999999999 99999999999999999999873 7899999999999999999999 9999999
Q ss_pred EEEEEEccChh
Q 006726 501 QLTVLKALDKK 511 (633)
Q Consensus 501 ~l~V~~a~~k~ 511 (633)
+|.|.++.++.
T Consensus 74 ~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 KLILEVSSSNA 84 (96)
T ss_dssp TBCEEEEECCC
T ss_pred EEEEEEcCcCC
Confidence 99999997654
No 301
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=125.16 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||..+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..|||..+.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999874 68999999999999999999999999999999999
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
+.++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987654
No 302
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.1e-15 Score=121.93 Aligned_cols=76 Identities=25% Similarity=0.376 Sum_probs=69.3
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..| +.+..++. ||||+|.+.++|.+|+. || |..|+|+.|.|
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~-----g~~~~g~~l~V 76 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QS-----QHSLGGHRLRV 76 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CS-----CCEETTEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cC-----CeEECCEEEEE
Confidence 5799999999999999999999999999986 66665665 99999999999999999 99 99999999999
Q ss_pred EEccChh
Q 006726 505 LKALDKK 511 (633)
Q Consensus 505 ~~a~~k~ 511 (633)
.+|.++.
T Consensus 77 ~~a~~~~ 83 (94)
T 2e5g_A 77 RPREQKE 83 (94)
T ss_dssp BCSCCSC
T ss_pred EECCcCC
Confidence 9887653
No 303
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.8e-15 Score=125.39 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||..+++++|+++|+.||.|.++.+++ ++|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34568999999999999999999999999999999873 679999999999999999999999999999999999
Q ss_pred ecCC
Q 006726 293 AVPK 296 (633)
Q Consensus 293 ~~~~ 296 (633)
+.++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8753
No 304
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=125.76 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=69.6
Q ss_pred CCCcEEEe--cCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE---
Q 006726 423 ELQNTIFI--CNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL--- 497 (633)
Q Consensus 423 ~~~~~lfV--~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l--- 497 (633)
.+.++||| +|||+++|+++|+++|++||.|..|.++. .+|||||+|.+.++|.+|+..|| |..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~ln-----G~~~~~~ 91 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN-----GKEVVDD 91 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTT-----TCEEECT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCEEccc
Confidence 34679999 66999999999999999999999987653 37999999999999999999999 9998
Q ss_pred --cCeEEEEEEccChh
Q 006726 498 --KGRQLTVLKALDKK 511 (633)
Q Consensus 498 --~gr~l~V~~a~~k~ 511 (633)
.|++|.|.++...+
T Consensus 92 lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 92 LGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TSCEEECEEEEESCCC
T ss_pred cCCCcEEEEEecccCc
Confidence 79999999987543
No 305
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=4e-16 Score=130.56 Aligned_cols=84 Identities=23% Similarity=0.289 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+|+++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999887 666666778899999999999999999999 999999999999999
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987653
No 306
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=4.2e-15 Score=120.75 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=68.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++| .|..+++. .++|||||+|.+.++|.+|+..|| |..++|++|.|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l~V 72 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFH-----QYSFRGKDLIV 72 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHT-----TEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhC-----CCeECCcEEEE
Confidence 5799999999999999999999999 99999874 569999999999999999999999 99999999999
Q ss_pred EEccC
Q 006726 505 LKALD 509 (633)
Q Consensus 505 ~~a~~ 509 (633)
.+|..
T Consensus 73 ~~a~~ 77 (88)
T 1wg1_A 73 QLQPT 77 (88)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99864
No 307
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3e-15 Score=118.89 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=65.0
Q ss_pred cEEEecCCCCCCCHHH----HHHHhhhc-CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 426 NTIFICNLPFDLDNEE----VKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~----L~~~F~~~-G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
+.|||+|||+.+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|| |..|.||
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~-----G~~l~gr 74 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRME-----NEDVFGN 74 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHT-----TCCSSSS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhc-----CCccCCc
Confidence 3499999999999988 55899999 599987 34 999999999999999999999 9999999
Q ss_pred EEEEEEccChhh
Q 006726 501 QLTVLKALDKKL 512 (633)
Q Consensus 501 ~l~V~~a~~k~~ 512 (633)
+|+|.+|..+..
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999987644
No 308
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.3e-14 Score=121.44 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=72.8
Q ss_pred CCcEEEecCCCC-----CCCHHHHHHHhhhcCceEEEEEeecCCC-CCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE
Q 006726 424 LQNTIFICNLPF-----DLDNEEVKQRFSAFGEVVSFVPVLHQVT-KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (633)
Q Consensus 424 ~~~~lfV~nLp~-----~~te~~L~~~F~~~G~V~~v~i~~d~~~-~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l 497 (633)
++++|+|+||.. +-++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.++++|.+|+..|| |..|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln-----G~~~ 81 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN-----GRYF 81 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT-----TCEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC-----CCEE
Confidence 468999999963 2378999999999999999999998654 6899999999999999999999999 9999
Q ss_pred cCeEEEEEEccC
Q 006726 498 KGRQLTVLKALD 509 (633)
Q Consensus 498 ~gr~l~V~~a~~ 509 (633)
+||+|.|.++..
T Consensus 82 ~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 82 GGRVVKACFYNL 93 (105)
T ss_dssp TTEECEEEECCH
T ss_pred CCcEEEEEEcCH
Confidence 999999999864
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=118.28 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456678999999999999999999999999999999874 499999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987654
No 310
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.1e-14 Score=125.21 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=70.4
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceE-EEEEecCHHHHHHHHHhcCCCCCCCeEEcC--eE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQ 501 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~-afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--r~ 501 (633)
-..|||+||++.+|+++|+++|++||.|..|+++.+ .+|| |||+|.+.++|.+|++.|| |..|.| +.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~Ln-----G~~i~g~~~~ 97 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCT 97 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHT-----TCEEETTEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcC-----CCeecCCCcE
Confidence 357889999999999999999999999999988754 3687 9999999999999999999 999998 99
Q ss_pred EEEEEccChh
Q 006726 502 LTVLKALDKK 511 (633)
Q Consensus 502 l~V~~a~~k~ 511 (633)
|+|.||+++.
T Consensus 98 LrI~~ak~~~ 107 (130)
T 3zzy_A 98 LRIDFSKLTS 107 (130)
T ss_dssp EEEEECSCSS
T ss_pred EEEEecCCCc
Confidence 9999998764
No 311
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=130.50 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+|+++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999984332222223688999999999999999999999999999999999999
Q ss_pred ecCCCc
Q 006726 293 AVPKNI 298 (633)
Q Consensus 293 ~~~~~~ 298 (633)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987654
No 312
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=1.2e-14 Score=120.37 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.....++|||+|||+ .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 455778999999998 99999999999999999999883 689999999999999999999999999999999
Q ss_pred EEecCC
Q 006726 291 DWAVPK 296 (633)
Q Consensus 291 ~~~~~~ 296 (633)
.|+.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998764
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=3e-15 Score=144.41 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVG--LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
..++|||+|||+.+|+++|+++|+.|| .|.+|.|++++.+|+++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006726 293 AVPKN 297 (633)
Q Consensus 293 ~~~~~ 297 (633)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87643
No 314
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.7e-15 Score=126.04 Aligned_cols=76 Identities=26% Similarity=0.404 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+.+++++|+++|++||.|..|.++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998874 67899999999999999999999999999999999996
Q ss_pred CC
Q 006726 295 PK 296 (633)
Q Consensus 295 ~~ 296 (633)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 315
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=1.2e-14 Score=121.91 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|++||.|..|.+++ |||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 345678999999999999999999999999999999863 589999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9987654
No 316
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-15 Score=122.63 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999996 666543 488999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997754
No 317
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-14 Score=118.69 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEE
Q 006726 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l 502 (633)
...++|||+|| ++|+++|+++|++||.|..|.+. .++|||||.|.+.++|.+|+..|| |..|+|++|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~-----g~~~~g~~l 79 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN-----GTQVESVQL 79 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT-----TEEETTEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC-----CCeECCeEE
Confidence 34689999996 89999999999999999999873 568999999999999999999999 999999999
Q ss_pred EEEEccChhh
Q 006726 503 TVLKALDKKL 512 (633)
Q Consensus 503 ~V~~a~~k~~ 512 (633)
.|.||.++..
T Consensus 80 ~v~~a~~~~~ 89 (97)
T 1x5p_A 80 KVNIARKQPM 89 (97)
T ss_dssp EEECCSSCCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 318
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=7.2e-15 Score=124.17 Aligned_cols=78 Identities=28% Similarity=0.569 Sum_probs=72.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45677899999999999999999999999999999987 5899999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.++.
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 997754
No 319
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=118.62 Aligned_cols=78 Identities=24% Similarity=0.479 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+|+++|+++|++||.|..|.+++ +||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456778999999999999999999999999999999974 389999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998764
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=5.3e-15 Score=122.38 Aligned_cols=81 Identities=23% Similarity=0.445 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988655 2468899999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997764
No 321
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.56 E-value=1.5e-14 Score=124.51 Aligned_cols=83 Identities=16% Similarity=0.348 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eeEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKFGK--RPIA 289 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~ 289 (633)
......|||+||++.+|+++|+++|++||.|.+|.++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 344568889999999999999999999999999988764 3577 9999999999999999999999987 9999
Q ss_pred EEEecCCCccc
Q 006726 290 VDWAVPKNIYS 300 (633)
Q Consensus 290 v~~~~~~~~~~ 300 (633)
|+|++++....
T Consensus 100 I~~ak~~~l~v 110 (130)
T 3zzy_A 100 IDFSKLTSLNV 110 (130)
T ss_dssp EEECSCSSCCC
T ss_pred EEecCCCceeE
Confidence 99998876543
No 322
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.3e-15 Score=124.35 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=71.5
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecC----HHH----HHHHHH--HhCCce
Q 006726 217 WKLIIRNI----PFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC----KRD----AESAIQ--KFNGQK 282 (633)
Q Consensus 217 ~~l~v~nl----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 282 (633)
+.|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 899988 789999
Q ss_pred eCCeeEEEEEec
Q 006726 283 FGKRPIAVDWAV 294 (633)
Q Consensus 283 ~~g~~i~v~~~~ 294 (633)
|+|+.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999853
No 323
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.56 E-value=9.6e-15 Score=130.56 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=71.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC--eEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQL 502 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--r~l 502 (633)
..+|||+|||+.+|+++|+++|++||.|..|.|+.+ .++|||||+|.+.++|.+|++.|| |..|.| ++|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~Ln-----G~~i~g~g~~L 116 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLD-----GQNIYNACCTL 116 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHST-----TBCSSSSCSCE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCcEE
Confidence 468999999999999999999999999999988643 258999999999999999999999 999965 999
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
+|.||+++.
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999999864
No 324
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-16 Score=135.22 Aligned_cols=86 Identities=23% Similarity=0.443 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN--------VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
..+.++|||+|||+.+++++|+++|++||.|.. |.++.++.++.++|||||+|.+.++|.+|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346689999999999999999999999999998 889988888999999999999999999999999999999
Q ss_pred CeeEEEEEecCCCc
Q 006726 285 KRPIAVDWAVPKNI 298 (633)
Q Consensus 285 g~~i~v~~~~~~~~ 298 (633)
|+.|.|.|+.++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987654
No 325
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.8e-14 Score=117.92 Aligned_cols=78 Identities=28% Similarity=0.443 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccC--CCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPV--GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
.....++|||+|||+.+++++|+++|++| |.|..+.++ +|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 899988874 47999999999999999999999999999999
Q ss_pred EEEecCCC
Q 006726 290 VDWAVPKN 297 (633)
Q Consensus 290 v~~~~~~~ 297 (633)
|.|+.++.
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998765
No 326
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=5.3e-15 Score=123.90 Aligned_cols=82 Identities=24% Similarity=0.384 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|.+|+. +|..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345799999999999999999999999999999999987 89999999999999999999998 999999999999999
Q ss_pred cCCCc
Q 006726 294 VPKNI 298 (633)
Q Consensus 294 ~~~~~ 298 (633)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87654
No 327
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.6e-15 Score=128.35 Aligned_cols=82 Identities=24% Similarity=0.392 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLV----WNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
...++|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|+++|||||+|.+.++|.+||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456799999999999999999999999975 68999888 4899999999999999999999996 99999999999
Q ss_pred EEEecCCC
Q 006726 290 VDWAVPKN 297 (633)
Q Consensus 290 v~~~~~~~ 297 (633)
|..+.++.
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 328
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=1.4e-14 Score=129.50 Aligned_cols=82 Identities=15% Similarity=0.311 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC--eeEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK--RPIAV 290 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v 290 (633)
.....+|||+||++.+|+++|+++|++||.|.+|.+..+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445689999999999999999999999999999987532 67999999999999999999999999965 99999
Q ss_pred EEecCCCc
Q 006726 291 DWAVPKNI 298 (633)
Q Consensus 291 ~~~~~~~~ 298 (633)
+|+.++..
T Consensus 119 ~~Ak~~~l 126 (164)
T 1sjr_A 119 DFSKLTSL 126 (164)
T ss_dssp EECSSSSC
T ss_pred EEecCCcc
Confidence 99988754
No 329
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=125.87 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=69.5
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCC---CCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCe
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT---KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~---~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr 500 (633)
..++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .++|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-------~~~G~ 78 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-------EEDGK 78 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-------EETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-------hcCCc
Confidence 368999999999999999999999999999 888888776 7999999999999999999999986 37888
Q ss_pred EEEEEEccC
Q 006726 501 QLTVLKALD 509 (633)
Q Consensus 501 ~l~V~~a~~ 509 (633)
.|.+..+..
T Consensus 79 ~~~~~~~~~ 87 (114)
T 2dnl_A 79 LYLCVSSPT 87 (114)
T ss_dssp EEEEECCSS
T ss_pred EEEeccCCC
Confidence 888776543
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=122.11 Aligned_cols=81 Identities=15% Similarity=0.306 Sum_probs=71.8
Q ss_pred CCCCCCEEEE--cCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-----C
Q 006726 212 SKTQKWKLII--RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-----G 284 (633)
Q Consensus 212 ~~~~~~~l~v--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-----~ 284 (633)
...+..+||| +||++.+++++|+++|++||.|.+|.++. .+|||||+|.+.++|++|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 66999999999999999999999998864 379999999999999999999999988 7
Q ss_pred CeeEEEEEecCCCc
Q 006726 285 KRPIAVDWAVPKNI 298 (633)
Q Consensus 285 g~~i~v~~~~~~~~ 298 (633)
|++|.|.|+.....
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 99999999975543
No 331
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.5e-15 Score=120.06 Aligned_cols=80 Identities=23% Similarity=0.391 Sum_probs=70.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC-ceeCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG-QKFGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~ 289 (633)
.....++|||+|||+.+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..+.|+.|.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6555552 579999999999999999999999 999999999
Q ss_pred EEEecCCCc
Q 006726 290 VDWAVPKNI 298 (633)
Q Consensus 290 v~~~~~~~~ 298 (633)
|.|+.++..
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999987653
No 332
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=7.9e-15 Score=126.47 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeE--EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
.....++|||+|||+.+|+++|+++|++| .|. +|.|+.++. |+++|||||+|.+.++|.+||+. ++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567899999999999999999999999 566 899999876 99999999999999999999985 88999999999
Q ss_pred EEEecCC
Q 006726 290 VDWAVPK 296 (633)
Q Consensus 290 v~~~~~~ 296 (633)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 333
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=9.8e-15 Score=120.70 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=70.7
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 212 SKTQKWKLIIRNIPF-KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
...+.++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|++|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999884 589999999999999999999999999999999
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.|+.++.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9997754
No 334
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=114.92 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCCHHH----HHHhhccC-CCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 215 QKWKLIIRNIPFKAKVNE----IKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~----l~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
..+.|||+|||+.+++++ |+++|++| |.|.+| ++ |+|||.|.+.++|.+|++.|||..+.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344499999999999888 56899999 599887 23 9999999999999999999999999999999
Q ss_pred EEEecCCCcc
Q 006726 290 VDWAVPKNIY 299 (633)
Q Consensus 290 v~~~~~~~~~ 299 (633)
|.|+..+...
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999876543
No 335
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=1.6e-14 Score=122.74 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 214 TQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 214 ~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
...++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 44589999999999 999999999999999999988 468999999999999999999999999999999999
Q ss_pred ecCCC
Q 006726 293 AVPKN 297 (633)
Q Consensus 293 ~~~~~ 297 (633)
+.+..
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97543
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=1.7e-14 Score=133.29 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=79.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|||+.+++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
|+.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=2.2e-14 Score=116.30 Aligned_cols=71 Identities=28% Similarity=0.543 Sum_probs=65.9
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhc----C-------ceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCC
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAF----G-------EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~ 492 (633)
..++|||+|||+++|+++|+++|++| | .|.++.++.+ +|||||+|.+.++|.+|+ .||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~---- 73 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFD---- 73 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcC----
Confidence 36899999999999999999999999 8 8999987643 899999999999999999 999
Q ss_pred CCeEEcCeEEEEEE
Q 006726 493 LGIFLKGRQLTVLK 506 (633)
Q Consensus 493 ~g~~l~gr~l~V~~ 506 (633)
|..|+|++|+|.+
T Consensus 74 -g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 -GIIFQGQSLKIRR 86 (87)
T ss_dssp -TCEETTEECEEEC
T ss_pred -CCEECCeEEEEeC
Confidence 9999999999974
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=5.3e-14 Score=120.65 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=67.8
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceE-EEEEecCHHHHHHHHHhcCCCCCCCeEEcC--eEE
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGT-GFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQL 502 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~-afV~f~~~e~A~~A~~~ln~~~~~g~~l~g--r~l 502 (633)
..|||+|||+.+|+++|+++|++||.|..|+|+.. .|| |||+|.+.++|..|+..|| |..|.| +.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~Ln-----G~~i~g~~~~l 94 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALN-----GADIYAGCCTL 94 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHT-----TCCCBTTBSEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCEecCCCeEE
Confidence 45789999999999999999999999999988642 386 9999999999999999999 999987 699
Q ss_pred EEEEccChh
Q 006726 503 TVLKALDKK 511 (633)
Q Consensus 503 ~V~~a~~k~ 511 (633)
+|.+|.++.
T Consensus 95 ~V~~Ak~~~ 103 (124)
T 2e5i_A 95 KIEYARPTR 103 (124)
T ss_dssp EEECCSCSC
T ss_pred EEEEecCCc
Confidence 999998764
No 339
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=116.73 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 292 (633)
....++|||+|||+.+|+++|+++|++||.|.+| +.+..+|+ ||||+|.+.++|.+|+. |||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 44444554 99999999999999999 999999999999998
Q ss_pred ecCCC
Q 006726 293 AVPKN 297 (633)
Q Consensus 293 ~~~~~ 297 (633)
+.++.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86654
No 340
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=119.20 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
....++|||+|||+.+++++|+++|++||.|..+ .++.++.+ |.|||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 58776543 449999999999999999999999999999999
Q ss_pred EecCCC
Q 006726 292 WAVPKN 297 (633)
Q Consensus 292 ~~~~~~ 297 (633)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998763
No 341
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=2.9e-14 Score=115.80 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEec
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 294 (633)
..++|||+|||+.+++++|+++|++| .|..+.+. +++|||||+|.+.++|.+|++.|||..+.|++|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999884 388999999999999999999999999999999999996
Q ss_pred CCC
Q 006726 295 PKN 297 (633)
Q Consensus 295 ~~~ 297 (633)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 554
No 342
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.9e-14 Score=115.48 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|| .+|+++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999996 89999999999999999999985 377999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9987654
No 343
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3.9e-14 Score=115.05 Aligned_cols=77 Identities=25% Similarity=0.421 Sum_probs=63.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--CCeeEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIA 289 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~ 289 (633)
.....++|||+|||+++|+++|+++|++||.|.+|.++++ ++|||||+|.+.++|.+ |+|..+ .|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999874 88999999999999983 456554 699999
Q ss_pred EEEecCCC
Q 006726 290 VDWAVPKN 297 (633)
Q Consensus 290 v~~~~~~~ 297 (633)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99998764
No 344
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=118.18 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=66.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|+.. ...+.|++|.|
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-------~~~~~g~~l~v 72 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-------DLIIKGISVHI 72 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-------EEEETTEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-------CceeCCEEEEE
Confidence 589999999999999999999999999999988754 699999999999999864321 46779999999
Q ss_pred EEccChhh
Q 006726 505 LKALDKKL 512 (633)
Q Consensus 505 ~~a~~k~~ 512 (633)
.++.++..
T Consensus 73 ~~a~~~~~ 80 (88)
T 1wf0_A 73 SNAEPKHN 80 (88)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99987643
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=7.1e-15 Score=131.37 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE--------EEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV--------YIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v--------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
..+.++|||+|||+.+|+++|+++|+.||.|..+ .+. .+|.++|||||+|.+.++|.+|+..|||..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999999999998764 332 36889999999999999999999999999999
Q ss_pred CeeEEEEEecCCC
Q 006726 285 KRPIAVDWAVPKN 297 (633)
Q Consensus 285 g~~i~v~~~~~~~ 297 (633)
|+.|.|.|+.+..
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997654
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=9.2e-14 Score=130.30 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHh--CCCeecCeEEEEccCCCCCCC---------CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEc
Q 006726 181 TVKSACASVALL--HQKEIKGGTVWARQLGGEGSK---------TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIP 249 (633)
Q Consensus 181 ~~~~A~~A~~~l--~~~~~~g~~i~v~~~~~~~~~---------~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~ 249 (633)
+.+....|+... ....+.+....+++....+.+ ...++|||+|||+.+|+++|+++|++||.|..|.++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567778888776 444555555555544221111 124799999999999999999999999999999999
Q ss_pred ccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 250 HNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 250 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
++. +|.++|||||+|.+.++|.+|+..+ +..++|+.|.|.|+..
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 875 5889999999999999999999865 5699999999998754
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.51 E-value=1e-14 Score=124.84 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=66.4
Q ss_pred CCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE--
Q 006726 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ-- 501 (633)
Q Consensus 424 ~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~-- 501 (633)
..++|||.|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|| |..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~-----g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD-----NTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHT-----TCBCCCTTSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhC-----CCEECCcEee
Confidence 3689999999999999999999999999999988754 899999999999999999999 99999998
Q ss_pred ---EEEEEccCh
Q 006726 502 ---LTVLKALDK 510 (633)
Q Consensus 502 ---l~V~~a~~k 510 (633)
|.|..+.++
T Consensus 83 ~~~i~v~~~~~~ 94 (115)
T 3beg_B 83 TAYIRVKVDGPR 94 (115)
T ss_dssp CCBCEEEECC--
T ss_pred eEEEEeccCCCC
Confidence 777776653
No 348
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=7.1e-14 Score=116.87 Aligned_cols=84 Identities=20% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHhhccCCCeEEEEEcccCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 006726 213 KTQKWKLIIRNIPF-----KAKVNEIKDMFSPVGLVWNVYIPHNTDT-GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR 286 (633)
Q Consensus 213 ~~~~~~l~v~nlp~-----~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 286 (633)
..++++|+|+||.. .-++++|+++|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|++.|||..++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999963 2378999999999999999999987543 68899999999999999999999999999999
Q ss_pred eEEEEEecCC
Q 006726 287 PIAVDWAVPK 296 (633)
Q Consensus 287 ~i~v~~~~~~ 296 (633)
.|.|.++.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999653
No 349
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=6.9e-14 Score=131.15 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=72.5
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeEEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~l~V 504 (633)
.++|||+|||+++|+++|+++|++||.|..|+++++. +|.++|||||+|.+.++|.+|+..++ ..|+|++|.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~------~~~~Gr~l~V 181 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG------QKYKETDLLI 181 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT------CEETTEECEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC------CeECCEEEEE
Confidence 4799999999999999999999999999999999886 58899999999999999999997765 5999999999
Q ss_pred EEccC
Q 006726 505 LKALD 509 (633)
Q Consensus 505 ~~a~~ 509 (633)
.++..
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 99765
No 350
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=1e-13 Score=118.84 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=68.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eeEEEEEe
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGF-AFVKFTCKRDAESAIQKFNGQKFGK--RPIAVDWA 293 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~~ 293 (633)
..|||+|||+.+|+++|+++|++||.|.+|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998652 286 9999999999999999999999977 69999999
Q ss_pred cCCCcc
Q 006726 294 VPKNIY 299 (633)
Q Consensus 294 ~~~~~~ 299 (633)
.++...
T Consensus 100 k~~~l~ 105 (124)
T 2e5i_A 100 RPTRLN 105 (124)
T ss_dssp SCSCCC
T ss_pred cCCcce
Confidence 887643
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=4.5e-14 Score=121.74 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=70.8
Q ss_pred CCCCcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcCeE
Q 006726 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~gr~ 501 (633)
....++|||+|| ++|+++|+++|++||.|..|.++ .++|||||.|.+.++|.+|+..|| |..|+|++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ln-----g~~~~g~~ 102 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN-----GTQVESVQ 102 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHT-----TCBCSSCB
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhC-----CCEECCeE
Confidence 345789999996 69999999999999999999875 468999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 006726 502 LTVLKALDKKL 512 (633)
Q Consensus 502 l~V~~a~~k~~ 512 (633)
|.|.||.++..
T Consensus 103 l~V~~a~~~~~ 113 (121)
T 2bz2_A 103 LKVNIARKQPM 113 (121)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEeCCCCC
Confidence 99999987643
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=118.97 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 289 (633)
....++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 888887766 7899999999999999999999884 36777777
Q ss_pred EEEec
Q 006726 290 VDWAV 294 (633)
Q Consensus 290 v~~~~ 294 (633)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 76543
No 353
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=6.1e-14 Score=119.98 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee-----E
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-----I 288 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----i 288 (633)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.|||..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999764 89999999999999999999999999998 7
Q ss_pred EEEEecCC
Q 006726 289 AVDWAVPK 296 (633)
Q Consensus 289 ~v~~~~~~ 296 (633)
.|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776554
No 354
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=1.3e-13 Score=115.46 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=72.0
Q ss_pred CCcEEEecCC--CCCCC--------HHHHHHHhhhcCceEEEEEeecCCC--CCCceEEEEEecCHHHHHHHHHhcCCCC
Q 006726 424 LQNTIFICNL--PFDLD--------NEEVKQRFSAFGEVVSFVPVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTTS 491 (633)
Q Consensus 424 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~V~~v~i~~d~~~--~~~~g~afV~f~~~e~A~~A~~~ln~~~ 491 (633)
++++|.|+|+ |.++. +++|++.|++||.|.+|+|+++..+ +.++|+|||+|.++++|.+|+..||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln--- 80 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT--- 80 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT---
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC---
Confidence 4679999999 44443 4799999999999999999988754 4689999999999999999999999
Q ss_pred CCCeEEcCeEEEEEEccCh
Q 006726 492 GLGIFLKGRQLTVLKALDK 510 (633)
Q Consensus 492 ~~g~~l~gr~l~V~~a~~k 510 (633)
|..|+||+|+|.++...
T Consensus 81 --G~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 81 --GRKFANRVVVTKYCDPD 97 (105)
T ss_dssp --TCEETTEECEEEEECHH
T ss_pred --CCEeCCCEEEEEEeCHH
Confidence 99999999999997643
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=1.3e-13 Score=111.65 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPV----G-------LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 282 (633)
...++|||+|||+.+++++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456799999999999999999999999 8 899999875 3799999999999999999 899999
Q ss_pred eCCeeEEEEE
Q 006726 283 FGKRPIAVDW 292 (633)
Q Consensus 283 ~~g~~i~v~~ 292 (633)
+.|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.2e-13 Score=113.59 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=69.7
Q ss_pred CCCCcEEEecCCCCCC-----------CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCC
Q 006726 422 DELQNTIFICNLPFDL-----------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT 490 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~~-----------te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~ 490 (633)
..+.++|+|+||.... ++++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..||
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln-- 85 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD-- 85 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST--
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC--
Confidence 3447899999994433 26899999999999999955 553 379999999999999999999999
Q ss_pred CCCCeEEcCeEEEEEEccChh
Q 006726 491 SGLGIFLKGRQLTVLKALDKK 511 (633)
Q Consensus 491 ~~~g~~l~gr~l~V~~a~~k~ 511 (633)
|..|+||+|.|.+|.++.
T Consensus 86 ---g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 ---GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp ---TCEETTEECEEEECCSCC
T ss_pred ---CCEECCcEEEEEEeCCCC
Confidence 999999999999998754
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.44 E-value=9.7e-14 Score=132.83 Aligned_cols=79 Identities=25% Similarity=0.273 Sum_probs=70.2
Q ss_pred CCCcEEEecCCCCCC---------CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCC
Q 006726 423 ELQNTIFICNLPFDL---------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (633)
Q Consensus 423 ~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~ 493 (633)
...++|||+|||..+ ++++|+++|++||.|.+|+|+. ++|||||.|.+.++|+.|+.+|+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~----- 200 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMS----- 200 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHT-----
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhC-----
Confidence 346899999999998 7999999999999999999885 38999999999999999999999
Q ss_pred CeEE------------cCeEEEEEEccChhh
Q 006726 494 GIFL------------KGRQLTVLKALDKKL 512 (633)
Q Consensus 494 g~~l------------~gr~l~V~~a~~k~~ 512 (633)
|..| .|+.|.|.||.+...
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999 899999999987543
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=112.18 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEe
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 293 (633)
...++|||+|||+.+++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999999864 78999999999999986532 134459999999999
Q ss_pred cCCCc
Q 006726 294 VPKNI 298 (633)
Q Consensus 294 ~~~~~ 298 (633)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=2.6e-13 Score=116.89 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=71.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 006726 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 291 (633)
.....++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999986 277999999999999999999999999999999999
Q ss_pred EecCCCc
Q 006726 292 WAVPKNI 298 (633)
Q Consensus 292 ~~~~~~~ 298 (633)
|+.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987643
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=6.4e-13 Score=113.27 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=71.4
Q ss_pred CCcEEEecCCC--CCC---CHHHHHHHhhhcCceEEEEEeecCC----CCCCceEEEEEecCHHHHHHHHHhcCCCCCCC
Q 006726 424 LQNTIFICNLP--FDL---DNEEVKQRFSAFGEVVSFVPVLHQV----TKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 494 (633)
Q Consensus 424 ~~~~lfV~nLp--~~~---te~~L~~~F~~~G~V~~v~i~~d~~----~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g 494 (633)
++++|+|+|+- .++ .++||++.|++||.|.+|+|+.+.. ++.++|+|||+|.++++|.+|+..|| |
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln-----G 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----G 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT-----T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC-----C
Confidence 36899999993 222 3799999999999999999999864 45678999999999999999999999 9
Q ss_pred eEEcCeEEEEEEccC
Q 006726 495 IFLKGRQLTVLKALD 509 (633)
Q Consensus 495 ~~l~gr~l~V~~a~~ 509 (633)
..|+||.|+|.++..
T Consensus 94 r~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQ 108 (118)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEECCcEEEEEEcCh
Confidence 999999999999764
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.4e-12 Score=110.97 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 006726 212 SKTQKWKLIIRNIPFKAK-----------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~~t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 280 (633)
...+.++|+|+||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456788999999954432 6899999999999999966 332 2799999999999999999999999
Q ss_pred ceeCCeeEEEEEecCCCcc
Q 006726 281 QKFGKRPIAVDWAVPKNIY 299 (633)
Q Consensus 281 ~~~~g~~i~v~~~~~~~~~ 299 (633)
..++|++|.|.|+.++..+
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999886544
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=4.9e-13 Score=127.94 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 006726 213 KTQKWKLIIRNIPFKA---------KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 283 (633)
....++|||+|||..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 7999999999999999999985 579999999999999999999999999
Q ss_pred ------------CCeeEEEEEecCCC
Q 006726 284 ------------GKRPIAVDWAVPKN 297 (633)
Q Consensus 284 ------------~g~~i~v~~~~~~~ 297 (633)
.|+.|.|.|+.+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2e-13 Score=114.05 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=63.9
Q ss_pred ecCCCCCCCHHHHHHHh------------hhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE
Q 006726 430 ICNLPFDLDNEEVKQRF------------SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (633)
Q Consensus 430 V~nLp~~~te~~L~~~F------------~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l 497 (633)
+.|||+.+++++|+++| ++||.|.+|.|+.+. +++++|||||.|.++++|.+|+..|| |..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~ln-----g~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLN-----NRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHT-----TCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHC-----CCEE
Confidence 55677777887777666 999999999999876 47899999999999999999999999 9999
Q ss_pred cCeEEEEEEc
Q 006726 498 KGRQLTVLKA 507 (633)
Q Consensus 498 ~gr~l~V~~a 507 (633)
+||+|.|.++
T Consensus 94 ~Gr~i~v~~s 103 (104)
T 1jmt_A 94 NGQPIHAELS 103 (104)
T ss_dssp TTEECCEEEC
T ss_pred CCEEEEEEEc
Confidence 9999999986
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=1.2e-12 Score=109.37 Aligned_cols=83 Identities=30% Similarity=0.444 Sum_probs=71.5
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHhhccCCCeEEEEEcccCCC--CCceeEEEEEecCHHHHHHHHHHhCCc
Q 006726 214 TQKWKLIIRNI--PFKAK--------VNEIKDMFSPVGLVWNVYIPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (633)
Q Consensus 214 ~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~ 281 (633)
.+++.|.|+|+ |..+. +++|++.|++||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35679999998 33332 4799999999999999999987644 367899999999999999999999999
Q ss_pred eeCCeeEEEEEecCC
Q 006726 282 KFGKRPIAVDWAVPK 296 (633)
Q Consensus 282 ~~~g~~i~v~~~~~~ 296 (633)
.++|+.|.|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998553
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=3e-12 Score=109.09 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHhhccCCCeEEEEEcccCC----CCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 006726 215 QKWKLIIRNIPF--KA---KVNEIKDMFSPVGLVWNVYIPHNTD----TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK 285 (633)
Q Consensus 215 ~~~~l~v~nlp~--~~---t~~~l~~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 285 (633)
++++|+|+|+-. .+ .+++|++.|++||.|.+|.|+++.. ++.++|+|||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999843 22 3789999999999999999998754 45778999999999999999999999999999
Q ss_pred eeEEEEEecC
Q 006726 286 RPIAVDWAVP 295 (633)
Q Consensus 286 ~~i~v~~~~~ 295 (633)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=4.8e-13 Score=111.72 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=64.1
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 006726 221 IRNIPFKAKVNEIKDMF------------SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (633)
Q Consensus 221 v~nlp~~~t~~~l~~~F------------~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 288 (633)
+.|||+.+++++|+++| ++||.|.+|.|+++. +++++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 999999999999875 47899999999999999999999999999999999
Q ss_pred EEEEe
Q 006726 289 AVDWA 293 (633)
Q Consensus 289 ~v~~~ 293 (633)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-11 Score=102.13 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=64.3
Q ss_pred CcEEEecCCC-------CCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEE
Q 006726 425 QNTIFICNLP-------FDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (633)
Q Consensus 425 ~~~lfV~nLp-------~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l 497 (633)
..+|.|.-.+ ..+|+++|+++|++||.|..|.|+ +.++|||||+|.+.++|.+|+..++ + +
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-----~--~ 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-----G--L 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-----B--C
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-----C--C
Confidence 3466666654 468999999999999999999887 4679999999999999999999977 5 5
Q ss_pred cCeEEEEEEccChh
Q 006726 498 KGRQLTVLKALDKK 511 (633)
Q Consensus 498 ~gr~l~V~~a~~k~ 511 (633)
.|++|+|.||.++.
T Consensus 78 ~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 VDNPLKISWLEGQP 91 (100)
T ss_dssp SSSBCEEECSSCCC
T ss_pred CCCeEEEEEccCCC
Confidence 79999999998754
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.2e-11 Score=102.96 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=67.3
Q ss_pred CCCcEEEecCC--CCCC--------CHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCC
Q 006726 423 ELQNTIFICNL--PFDL--------DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (633)
Q Consensus 423 ~~~~~lfV~nL--p~~~--------te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~ 492 (633)
.++++|.|+|+ |.+. .++||++.|++||.|.+|.|+++. ++|+|||+|.+.++|.+|+..||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~ln---- 76 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALH---- 76 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHT----
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhC----
Confidence 34679999999 2221 257899999999999999886552 59999999999999999999999
Q ss_pred CCeEEcCeEEEEEEccCh
Q 006726 493 LGIFLKGRQLTVLKALDK 510 (633)
Q Consensus 493 ~g~~l~gr~l~V~~a~~k 510 (633)
|..|+||.|.|.++...
T Consensus 77 -G~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 77 -GRWFAGKMITAAYVPLP 93 (114)
T ss_dssp -TCEETTEECEEEEECHH
T ss_pred -CCEECCEEEEEEEEcHH
Confidence 99999999999998643
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.2e-11 Score=97.62 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=62.4
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 006726 216 KWKLIIRNIP-------FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (633)
Q Consensus 216 ~~~l~v~nlp-------~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 288 (633)
..+|.|.-.+ ..+++++|+++|++||.|..|.|+. +++|||||+|.+.++|..|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3455555443 4689999999999999999999973 4899999999999999999997544 689999
Q ss_pred EEEEecCCC
Q 006726 289 AVDWAVPKN 297 (633)
Q Consensus 289 ~v~~~~~~~ 297 (633)
.|.|+.++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=5.8e-11 Score=100.33 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCC----------HHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 006726 213 KTQKWKLIIRNIPFKAK----------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 282 (633)
..++++|.++|+=.... +++|++.|++||.|.+|.|+++. ++|||||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35677899999843222 56899999999999999997753 58999999999999999999999999
Q ss_pred eCCeeEEEEEecC
Q 006726 283 FGKRPIAVDWAVP 295 (633)
Q Consensus 283 ~~g~~i~v~~~~~ 295 (633)
++|+.|.|.|+..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999854
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.18 E-value=3.8e-11 Score=121.26 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=65.6
Q ss_pred CCCCcEEEecC--CCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEc-
Q 006726 422 DELQNTIFICN--LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK- 498 (633)
Q Consensus 422 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~- 498 (633)
..++.+|||+| |++.+|+++|+++|++||.|..|.++. ++|||||+|.+.++|++|++.|| |..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln-----G~~~~~ 83 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN-----GKEVVD 83 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTT-----TCEEEC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC-----CCcccc
Confidence 34568999999 589999999999999999999986542 48999999999999999999999 88873
Q ss_pred --Ce--EEEEEEcc
Q 006726 499 --GR--QLTVLKAL 508 (633)
Q Consensus 499 --gr--~l~V~~a~ 508 (633)
|+ +|.|.++.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 45 68888875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=8.8e-11 Score=118.59 Aligned_cols=77 Identities=16% Similarity=0.336 Sum_probs=67.3
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCe
Q 006726 212 SKTQKWKLIIRN--IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKR 286 (633)
Q Consensus 212 ~~~~~~~l~v~n--lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 286 (633)
...+..+|||+| |++.+|+++|+++|++||.|.+|.++. ++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356778999999 578999999999999999999988754 579999999999999999999999988 345
Q ss_pred --eEEEEEec
Q 006726 287 --PIAVDWAV 294 (633)
Q Consensus 287 --~i~v~~~~ 294 (633)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68888874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=8.1e-10 Score=86.97 Aligned_cols=74 Identities=22% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCCCcEEEecCCC----CCCCH----HHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCC
Q 006726 422 DELQNTIFICNLP----FDLDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (633)
Q Consensus 422 ~~~~~~lfV~nLp----~~~te----~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~ 493 (633)
.++..||+|...| ..+-+ .+|.+.|++||.|..++++.+. +||+|.+.++|.+|+. ||
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mn----- 69 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LN----- 69 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GT-----
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cC-----
Confidence 3446799998877 23333 7899999999999999998763 8999999999999998 99
Q ss_pred CeEEcCeEEEEEEccC
Q 006726 494 GIFLKGRQLTVLKALD 509 (633)
Q Consensus 494 g~~l~gr~l~V~~a~~ 509 (633)
|..++||.|+|.++.+
T Consensus 70 G~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 70 GKELLNRTITIALKSP 85 (91)
T ss_dssp TCEETTEEEEEEECCC
T ss_pred CeEeCCeEEEEEeCCC
Confidence 9999999999999875
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=3.4e-10 Score=95.53 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=69.6
Q ss_pred CCCCcEEEecCCCCC-CCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecC-HHHHHHHHHhcCCCCCCCeEEcC
Q 006726 422 DELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKT-VEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 422 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~-~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
-+.++.|||.||+++ ++.++|+++|++||.|.+|.++.+.. .|||.|.+ +.+|..|+..+|.. +..|+|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~---~~~i~g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNG---NLQLRN 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTS---CBCTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcC---CcEEeC
Confidence 455899999999999 99999999999999999999887643 59999999 89999999999632 899999
Q ss_pred eEEEEEEccCh
Q 006726 500 RQLTVLKALDK 510 (633)
Q Consensus 500 r~l~V~~a~~k 510 (633)
..+.+....-.
T Consensus 86 ~~~~~evL~Ge 96 (121)
T 1owx_A 86 KEVTWEVLEGE 96 (121)
T ss_dssp SSEEEEECCHH
T ss_pred cEEEEEECCCH
Confidence 98888776543
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=3.7e-09 Score=83.19 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=64.1
Q ss_pred CCCCCEEEEcCCCC----CCCH----HHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 006726 213 KTQKWKLIIRNIPF----KAKV----NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (633)
Q Consensus 213 ~~~~~~l~v~nlp~----~~t~----~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 284 (633)
.++..||+|.-.|. ++-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|++ |||..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 34566888888772 3333 6799999999999999998863 8999999999999998 9999999
Q ss_pred CeeEEEEEecCC
Q 006726 285 KRPIAVDWAVPK 296 (633)
Q Consensus 285 g~~i~v~~~~~~ 296 (633)
|+.|+|.++.+.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998764
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=1e-08 Score=86.45 Aligned_cols=76 Identities=9% Similarity=0.056 Sum_probs=67.6
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecC-HHHHHHHHHHhC--CceeCCee
Q 006726 212 SKTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC-KRDAESAIQKFN--GQKFGKRP 287 (633)
Q Consensus 212 ~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~g~~ 287 (633)
.-..++.|+|+||+.. ++.++|+++|++||.|..|.+.++.. .|||.|.+ +++|..|+..|| +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4567889999999999 99999999999999999999988643 49999999 899999999994 77889988
Q ss_pred EEEEEe
Q 006726 288 IAVDWA 293 (633)
Q Consensus 288 i~v~~~ 293 (633)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888765
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.1e-08 Score=80.80 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=62.5
Q ss_pred CCCCCcEEEecCCCCC-----CCH----HHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCC
Q 006726 421 EDELQNTIFICNLPFD-----LDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTS 491 (633)
Q Consensus 421 ~~~~~~~lfV~nLp~~-----~te----~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~ 491 (633)
..++..||+|..++.. +-+ .+|.+.|++||.|..++++.+. +||+|.+.++|.+||. ||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld--- 78 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD--- 78 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG---
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC---
Confidence 3455679999988743 222 6799999999999999998774 9999999999999998 99
Q ss_pred CCCeEEcCeEEEEEEc
Q 006726 492 GLGIFLKGRQLTVLKA 507 (633)
Q Consensus 492 ~~g~~l~gr~l~V~~a 507 (633)
|..++||.|+|.+.
T Consensus 79 --G~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 79 --GMKVKGRAVKISGP 92 (95)
T ss_dssp --GSEETTEEEEEECC
T ss_pred --CeeeCCeEEEEecc
Confidence 99999999999874
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=2.5e-08 Score=95.69 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred cEEEecCC-----CCCCCHHHHHHHhhhcCceEEEEEeecCC----CCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeE
Q 006726 426 NTIFICNL-----PFDLDNEEVKQRFSAFGEVVSFVPVLHQV----TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (633)
Q Consensus 426 ~~lfV~nL-----p~~~te~~L~~~F~~~G~V~~v~i~~d~~----~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~ 496 (633)
..+.+.|+ ..+-.+++|++.|++||.|.++.|+.+.. ++.++|++||+|.+.++|.+|+..|| |..
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~-----gr~ 199 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN-----GRW 199 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc-----Cce
Confidence 45555555 23346789999999999999999986654 45899999999999999999999999 999
Q ss_pred EcCeEEEEEEcc
Q 006726 497 LKGRQLTVLKAL 508 (633)
Q Consensus 497 l~gr~l~V~~a~ 508 (633)
++||.|.|.++.
T Consensus 200 ~~gr~i~~~~~~ 211 (222)
T 3dxb_A 200 FAGRKVVAEVYD 211 (222)
T ss_dssp SSSSBCEEEECC
T ss_pred ECCeEEEEEEcC
Confidence 999999999975
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.69 E-value=1e-07 Score=91.44 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=61.6
Q ss_pred CCCHHHHHHhhccCCCeEEEEEcccC----CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEEecC
Q 006726 227 KAKVNEIKDMFSPVGLVWNVYIPHNT----DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (633)
Q Consensus 227 ~~t~~~l~~~F~~~G~i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 295 (633)
.-.+++|++.|++||.|.++.|+++. .+++++|++||+|.+.++|.+|++.|||+.++||.|.+.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34578999999999999999998553 3458999999999999999999999999999999999999853
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=4.2e-08 Score=77.53 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCC-----CCH----HHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 006726 213 KTQKWKLIIRNIPFK-----AKV----NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF 283 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~-----~t~----~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 283 (633)
.++..||+|.-++.. +-. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456679999988743 322 5699999999999999998863 9999999999999998 999999
Q ss_pred CCeeEEEEEec
Q 006726 284 GKRPIAVDWAV 294 (633)
Q Consensus 284 ~g~~i~v~~~~ 294 (633)
+|+.|+|.+-.
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998753
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.3e-06 Score=70.21 Aligned_cols=73 Identities=11% Similarity=0.096 Sum_probs=67.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhc-----CceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAF-----GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~-----G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
.++|-|.|||..+++..|+.+.+++ |.+..+.+..| .|-|+|+|.+...|-+|.-+|+ |..|.|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~-----G~ef~g 89 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILN-----GSQFQG 89 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHS-----SEEETT
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcC-----CeeecC
Confidence 5799999999999999999999999 99999888776 4569999999999999999999 999999
Q ss_pred eEEEEEEcc
Q 006726 500 RQLTVLKAL 508 (633)
Q Consensus 500 r~l~V~~a~ 508 (633)
|+|++.-..
T Consensus 90 r~Lr~gTv~ 98 (117)
T 2l9w_A 90 KVIRSGTIN 98 (117)
T ss_dssp EEEEEECHH
T ss_pred eEEEecCHH
Confidence 999997643
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=8.4e-06 Score=65.57 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccC-----CCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPV-----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 288 (633)
...++|-+-|||..++...|+.+..++ |.|..+.+..+. |-|+|+|.+...|-+|.-.|+|..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 446799999999999999999999999 999999998763 339999999999999999999999999999
Q ss_pred EEEE
Q 006726 289 AVDW 292 (633)
Q Consensus 289 ~v~~ 292 (633)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9974
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=5.9e-05 Score=60.31 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=60.7
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhh-----cCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSA-----FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~-----~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
+++|.|.|||.++.++.|.-+|+. =|.|..+.... +-|+|+|.+.+.|++.|+.-. +.|+|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~------H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD------HELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC------CBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc------ceecC
Confidence 689999999999999999999986 26788876531 578999999999999997744 78999
Q ss_pred eEEEEEEccCh
Q 006726 500 RQLTVLKALDK 510 (633)
Q Consensus 500 r~l~V~~a~~k 510 (633)
..|.|....++
T Consensus 74 ~~LsV~P~~~~ 84 (104)
T 2dhx_A 74 AQLSLRPAPPR 84 (104)
T ss_dssp SBCEEEECCCC
T ss_pred eEEEEEcCCCC
Confidence 99999886654
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=6.7e-05 Score=60.35 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=63.6
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 006726 216 KWKLIIRNIPFKA-K----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (633)
Q Consensus 216 ~~~l~v~nlp~~~-t----~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 290 (633)
.++|+|.||+..+ . .+.++++|..|+++......+. -.-..|.|.++++|.+|...|++..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998755 2 3678999999999888777652 234799999999999999999999999999999
Q ss_pred EEecCCC
Q 006726 291 DWAVPKN 297 (633)
Q Consensus 291 ~~~~~~~ 297 (633)
.|+.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9997543
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.00033 Score=56.04 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcc-----CCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSP-----VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~-----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 288 (633)
.-..+|.|.|||..+.++.|.-+|+. =|+|.++.... +-|+|+|.+.+.|++.++. ..+.|.+.+|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34679999999999999999999987 25688887643 3489999999999999974 4788899999
Q ss_pred EEEEecCC
Q 006726 289 AVDWAVPK 296 (633)
Q Consensus 289 ~v~~~~~~ 296 (633)
.|....++
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99775443
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00021 Score=57.44 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=62.5
Q ss_pred CcEEEecCCCCCC-C----HHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 425 QNTIFICNLPFDL-D----NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 425 ~~~lfV~nLp~~~-t----e~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
.++|+|.||+.++ + .+.++++|..|+.+......+.- .-..|.|.++++|.+|-..|+ +..++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh-----~~~f~g 73 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLH-----KTEFLG 73 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTST-----TSEETT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhc-----cceecC
Confidence 4699999998866 2 36789999999998887665432 246899999999999999999 999999
Q ss_pred eEEEEEEccC
Q 006726 500 RQLTVLKALD 509 (633)
Q Consensus 500 r~l~V~~a~~ 509 (633)
+.|+|.++.+
T Consensus 74 ~~~r~YFgq~ 83 (104)
T 1wey_A 74 KEMKLYFAQT 83 (104)
T ss_dssp EECEEECCCC
T ss_pred ceeEEEecCC
Confidence 9999999984
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.0008 Score=53.09 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=49.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 006726 211 GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (633)
Q Consensus 211 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (633)
........++| ++|..+...||.++|+.||.|. |.++-|. .|||.|.+++.|..|+..++
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34455667777 9999999999999999999664 7776552 49999999999999998753
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.22 E-value=0.0018 Score=51.29 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=60.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeC---Ce--eEE
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFG---KR--PIA 289 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~--~i~ 289 (633)
+.|.|++||+.+|++++.+.++.+..+.....+....+. ..-+-|||.|.+.+++....+.++|..+- |. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 478999999999999999999999887766665443222 23366999999999999999999999882 22 345
Q ss_pred EEEe
Q 006726 290 VDWA 293 (633)
Q Consensus 290 v~~~ 293 (633)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.03 E-value=0.0022 Score=50.73 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=56.9
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTK--RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~--~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
+.|.|++||+..|++++.+.++....+.....+..+.+. ....-|||.|.+.+++..-.+.++ |+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~-----g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD-----GYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT-----TCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC-----CcEEEc
Confidence 479999999999999999999999888777666554322 234669999999999999999999 877753
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.73 E-value=0.0017 Score=51.48 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=45.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (633)
..++| ++|..+...||.++|++||.| .|.++-|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999955 37777652 49999999999999999764
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.70 E-value=0.01 Score=49.08 Aligned_cols=77 Identities=14% Similarity=0.249 Sum_probs=62.0
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC-eEEE
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG-RQLT 503 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g-r~l~ 503 (633)
.+-|.|.+.|... -..|...|++||.|.+.... ....+-.|.|.++.+|++||.. | |..|+| -.|-
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-N-----G~ii~g~~mIG 90 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-D-----GRIFGESIMIG 90 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-T-----TCEETTTEECE
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-C-----CeEecCCEEEE
Confidence 5789999999885 77889999999999987541 2357899999999999999955 7 899985 6778
Q ss_pred EEEccChhhhc
Q 006726 504 VLKALDKKLAH 514 (633)
Q Consensus 504 V~~a~~k~~~~ 514 (633)
|.+...+....
T Consensus 91 V~p~~d~~vi~ 101 (119)
T 1wwh_A 91 VKPCIDKNVME 101 (119)
T ss_dssp EEECCCHHHHC
T ss_pred EEECCCHHHHH
Confidence 88876655443
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.59 E-value=0.0061 Score=48.10 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=45.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhc
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~l 487 (633)
...++| ++|.++...||.++|++||.|. |+.+-| ..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 357777 9999999999999999999653 445544 26999999999999999877
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.0082 Score=49.72 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-eeEEEE
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGK-RPIAVD 291 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~i~v~ 291 (633)
....+.|.|-+.|... ...|..+|++||.|.+..... ...+-.|.|.+..+|++||.. ||..++| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 3456799999999885 577889999999999887632 346899999999999999995 9999974 677787
Q ss_pred Eec
Q 006726 292 WAV 294 (633)
Q Consensus 292 ~~~ 294 (633)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 754
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.33 E-value=0.006 Score=48.29 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=44.8
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
..++| ++|.++.-.||.++|++||.| .|+.+-| ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 46667 999999999999999999944 3455544 269999999999999998774
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.31 E-value=0.011 Score=46.90 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=56.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeC---C--eeE
Q 006726 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG--LSKGFAFVKFTCKRDAESAIQKFNGQKFG---K--RPI 288 (633)
Q Consensus 216 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g--~~i 288 (633)
+-.|.||.||+.+|++++.+.++.+-.+.....+....+. ..-.-|||.|.+.++.....+.++|..+- | .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999999886555433332221111 12245899999999999999999999882 2 245
Q ss_pred EEEEe
Q 006726 289 AVDWA 293 (633)
Q Consensus 289 ~v~~~ 293 (633)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.88 E-value=0.0057 Score=51.32 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=57.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEccc------------CCCC-CceeEEEEEecCHHHHHHHHHHhCC
Q 006726 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHN------------TDTG-LSKGFAFVKFTCKRDAESAIQKFNG 280 (633)
Q Consensus 215 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~------------~~~~-~~~g~afV~f~~~~~A~~A~~~l~g 280 (633)
..+.|.|-+.|.... ..+.+.|++||.|.+- ...+. +..+ ....+-.|+|.+..+|.+||.. ||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 456888999976554 6688899999998752 12110 0000 1346889999999999999995 99
Q ss_pred ceeCCeeEEEEEecC
Q 006726 281 QKFGKRPIAVDWAVP 295 (633)
Q Consensus 281 ~~~~g~~i~v~~~~~ 295 (633)
..|+|.-|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999999988754
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.33 E-value=0.019 Score=45.67 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=51.2
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCCeEEcC
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTK--RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~--~~~g~afV~f~~~e~A~~A~~~ln~~~~~g~~l~g 499 (633)
+-.|.||.||+..|++++.+.++..-.+.....+....+. ..-.-|||.|.+.++...-.+..+ |..|-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~-----g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD-----GYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST-----TEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CcEEEe
Confidence 3489999999999999998888876555443332222111 122458999999999999999999 887753
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.67 E-value=0.041 Score=46.19 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=55.4
Q ss_pred cEEEecCCCCCCCHHHHHHHhhhcCceEEE-EEeecC--------CCC-----CCceEEEEEecCHHHHHHHHHhcCCCC
Q 006726 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSF-VPVLHQ--------VTK-----RPKGTGFLKFKTVEAATAAVSASKTTS 491 (633)
Q Consensus 426 ~~lfV~nLp~~~te~~L~~~F~~~G~V~~v-~i~~d~--------~~~-----~~~g~afV~f~~~e~A~~A~~~ln~~~ 491 (633)
..|.|.+.|.+. ...+.+.|++||.|.+- ...... ... ...++..|+|+++.+|.+||. -|
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N--- 82 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN--- 82 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT---
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC---
Confidence 578888997654 55678899999998762 111000 000 124678999999999999995 57
Q ss_pred CCCeEEcCeEEEEEEcc
Q 006726 492 GLGIFLKGRQLTVLKAL 508 (633)
Q Consensus 492 ~~g~~l~gr~l~V~~a~ 508 (633)
|..|+|..|-|.+..
T Consensus 83 --G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 --GAVFNGVLLGVIPYT 97 (132)
T ss_dssp --TCEETTEECEEEECC
T ss_pred --CeEeCcEEEEEEECC
Confidence 999999999999985
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.95 E-value=0.025 Score=58.92 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=41.1
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHh
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ 486 (633)
.++|||. .|..+++.+|.++|++||.|..+..- ... .-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~--~~~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFY--ESF---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE--CSS---SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE--ccC---CeEEEEEeCCHHHHHHHHhc
Confidence 3799997 79999999999999999999987443 222 37999999999999987755
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.75 E-value=0.048 Score=56.82 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=41.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 006726 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (633)
Q Consensus 217 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 277 (633)
++|+|. .|...++.+|.++|++||+|.++..-.+ ..-||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-----~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-----FGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-----SSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-----CCeEEEEEeCCHHHHHHHHhc
Confidence 589997 7899999999999999999999888654 337999999999999977653
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.50 E-value=3.6 Score=43.63 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 006726 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (633)
Q Consensus 214 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (633)
.....++|+ +|..+...+|.++|+.||.+ .|+++-+ ..|||.|.+.+.|..+++.++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 345677776 99999999999999999965 4665543 349999999999999999875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.80 E-value=5.7 Score=42.06 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=44.8
Q ss_pred CcEEEecCCCCCCCHHHHHHHhhhcCceEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHhcC
Q 006726 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASK 488 (633)
Q Consensus 425 ~~~lfV~nLp~~~te~~L~~~F~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A~~A~~~ln 488 (633)
...++|+ +|..+...+|.++|+.||.| +|+.+- ...|||.|.+++.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHH
Confidence 3467776 99999999999999999965 444432 3469999999999999999985
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.03 E-value=1.2e+02 Score=22.99 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=46.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 006726 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (633)
Q Consensus 213 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 279 (633)
....+-|.|-|+|..+-..++.-.....|---.|..+- |-|.+.|.+.++...|++.|-
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHH
Confidence 34678889999999999888887777777655555432 449999999999999998863
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.22 E-value=86 Score=27.47 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=38.1
Q ss_pred cEEEecCCCC-C--------CCHHHHHHHh--hhcCceEEEEEeecCCCCCCceEEEEEecCHHHH
Q 006726 426 NTIFICNLPF-D--------LDNEEVKQRF--SAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAA 480 (633)
Q Consensus 426 ~~lfV~nLp~-~--------~te~~L~~~F--~~~G~V~~v~i~~d~~~~~~~g~afV~f~~~e~A 480 (633)
..+.|-|+|. . ....+|++.| +.|.++. |+.+..+ ...+|+|.|.|..--..
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHH
Confidence 4788889987 2 2357999977 9999877 4555554 34689999999875443
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.12 E-value=1.2e+02 Score=26.66 Aligned_cols=57 Identities=26% Similarity=0.379 Sum_probs=38.1
Q ss_pred CEEEEcCCCC-C--------CCHHHHHHhh--ccCCCeEEEEEcccCCCCCceeEEEEEecCHHH-HHHHHH
Q 006726 217 WKLIIRNIPF-K--------AKVNEIKDMF--SPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRD-AESAIQ 276 (633)
Q Consensus 217 ~~l~v~nlp~-~--------~t~~~l~~~F--~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~A~~ 276 (633)
.+++|-|+|. . ....+|++.| +.|.++. ++.+... .| ++|+|.|.|.+.-. -..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEecCChHHHHHHHH
Confidence 3677888886 2 3357899977 9999976 4444432 23 78999999986543 334443
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=25.20 E-value=36 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEEEEeccHHHHHHHHHHhCCceeCCeEEEEeec
Q 006726 13 FGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46 (633)
Q Consensus 13 ~afV~F~~~edA~~Al~~l~g~~i~gr~i~V~~a 46 (633)
|.||.-.. +.|..+++.|++..+.|++++|..+
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 67777654 4588899999999999999999876
Done!