Query 006729
Match_columns 633
No_of_seqs 178 out of 2496
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 4.4E-73 1.5E-77 628.3 45.0 511 33-625 8-537 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 3.4E-72 1.1E-76 619.4 41.1 501 41-625 19-530 (536)
3 3o83_A Peptide arylation enzym 100.0 4E-72 1.4E-76 619.7 39.1 498 42-628 28-538 (544)
4 3etc_A AMP-binding protein; ad 100.0 2.6E-71 9E-76 616.5 45.8 503 41-626 52-575 (580)
5 1v25_A Long-chain-fatty-acid-C 100.0 1.4E-71 4.8E-76 614.9 43.1 496 43-625 17-531 (541)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.2E-72 2.1E-76 617.4 39.5 490 43-625 24-526 (539)
7 3r44_A Fatty acyl COA syntheta 100.0 1.1E-71 3.7E-76 612.3 41.1 493 39-625 11-508 (517)
8 3rix_A Luciferase, luciferin 4 100.0 6.4E-72 2.2E-76 619.1 38.4 514 36-627 12-538 (550)
9 1t5h_X 4-chlorobenzoyl COA lig 100.0 4E-71 1.4E-75 606.4 41.5 484 43-625 1-499 (504)
10 2d1s_A Luciferase, luciferin 4 100.0 2.1E-70 7E-75 606.2 42.1 502 41-625 22-538 (548)
11 3ivr_A Putative long-chain-fat 100.0 1.1E-70 3.9E-75 603.7 38.7 488 42-627 4-498 (509)
12 4gr5_A Non-ribosomal peptide s 100.0 3.9E-71 1.3E-75 615.2 34.6 478 40-626 71-567 (570)
13 3c5e_A Acyl-coenzyme A synthet 100.0 9.4E-70 3.2E-74 603.2 44.4 499 41-625 35-557 (570)
14 4fuq_A Malonyl COA synthetase; 100.0 2.1E-70 7.2E-75 600.0 36.4 486 48-625 4-495 (503)
15 1pg4_A Acetyl-COA synthetase; 100.0 9.5E-70 3.3E-74 612.2 42.1 510 44-625 76-616 (652)
16 1amu_A GRSA, gramicidin synthe 100.0 4.2E-69 1.4E-73 597.0 43.0 476 39-626 34-525 (563)
17 3fce_A D-alanine--poly(phospho 100.0 3.6E-69 1.2E-73 592.2 37.1 478 44-624 1-498 (512)
18 3e7w_A D-alanine--poly(phospho 100.0 4.3E-69 1.5E-73 591.3 37.4 478 44-625 1-498 (511)
19 2v7b_A Benzoate-coenzyme A lig 100.0 3.1E-69 1.1E-73 595.1 36.3 497 41-625 21-527 (529)
20 4dg8_A PA1221; ANL superfamily 100.0 2.7E-68 9.2E-73 595.7 42.3 466 41-624 24-507 (620)
21 3ipl_A 2-succinylbenzoate--COA 100.0 4.3E-69 1.5E-73 590.2 34.8 486 44-625 1-492 (501)
22 1ry2_A Acetyl-coenzyme A synth 100.0 3.9E-69 1.3E-73 607.6 35.4 510 44-625 82-632 (663)
23 3rg2_A Enterobactin synthase c 100.0 1.8E-68 6.1E-73 599.1 40.6 493 41-625 24-529 (617)
24 3nyq_A Malonyl-COA ligase; A/B 100.0 5.2E-69 1.8E-73 589.0 31.3 476 41-625 19-503 (505)
25 3l8c_A D-alanine--poly(phospho 100.0 3.5E-68 1.2E-72 585.7 30.6 480 43-625 3-507 (521)
26 3tsy_A Fusion protein 4-coumar 100.0 1.4E-67 4.8E-72 621.8 37.3 509 41-627 58-579 (979)
27 3ite_A SIDN siderophore synthe 100.0 5.5E-67 1.9E-71 581.4 36.8 507 38-627 14-540 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 7.3E-67 2.5E-71 584.3 32.0 498 41-625 8-562 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 5.6E-66 1.9E-70 575.7 37.7 501 31-625 8-558 (576)
30 2vsq_A Surfactin synthetase su 100.0 1.2E-64 4.2E-69 611.5 43.8 477 41-625 461-955 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 5.9E-57 2E-61 491.4 34.9 413 30-516 10-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.1E-47 7.3E-52 398.4 17.2 306 221-624 36-348 (358)
33 2y27_A Phenylacetate-coenzyme 100.0 3.3E-43 1.1E-47 378.0 27.0 334 217-621 85-435 (437)
34 3qov_A Phenylacetate-coenzyme 100.0 2.6E-43 8.8E-48 378.7 25.8 330 218-620 81-432 (436)
35 2y4o_A Phenylacetate-coenzyme 100.0 1E-42 3.6E-47 374.8 25.6 348 199-622 72-436 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 1.6E-27 5.6E-32 249.8 18.9 237 219-523 88-365 (369)
37 3lax_A Phenylacetate-coenzyme 99.1 1.9E-11 6.3E-16 103.3 1.8 95 515-621 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.1 1.6E-10 5.6E-15 97.4 6.0 96 515-622 1-102 (109)
39 4eql_A 4-substituted benzoates 98.9 1.7E-08 5.9E-13 108.8 15.8 132 387-541 302-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.9 3.8E-08 1.3E-12 106.3 17.0 130 387-539 307-457 (609)
41 4epl_A Jasmonic acid-amido syn 98.6 5.7E-07 1.9E-11 96.7 17.3 130 403-552 320-473 (581)
42 2y4o_A Phenylacetate-coenzyme 92.1 0.79 2.7E-05 47.9 11.4 107 57-166 90-200 (443)
43 2y27_A Phenylacetate-coenzyme 92.1 0.69 2.4E-05 48.2 10.9 107 57-166 88-198 (437)
44 3qov_A Phenylacetate-coenzyme 91.7 0.92 3.2E-05 47.2 11.4 123 59-184 86-217 (436)
45 3ipl_A 2-succinylbenzoate--COA 86.7 5.1 0.00018 42.3 12.7 122 57-184 161-285 (501)
46 4gs5_A Acyl-COA synthetase (AM 84.2 8.6 0.00029 38.6 12.4 130 47-184 25-159 (358)
47 3hgu_A EHPF; phenazine, antibi 84.0 2.9 0.0001 42.2 8.8 106 57-166 89-221 (369)
48 1mdb_A 2,3-dihydroxybenzoate-A 81.2 14 0.00048 39.3 13.3 122 57-184 180-309 (539)
49 2d1s_A Luciferase, luciferin 4 79.3 6.9 0.00024 41.9 10.1 122 59-184 192-320 (548)
50 3e7w_A D-alanine--poly(phospho 74.5 19 0.00066 37.9 11.8 123 57-184 141-271 (511)
51 3fce_A D-alanine--poly(phospho 74.0 16 0.00055 38.5 11.0 123 57-184 142-272 (512)
52 4gr5_A Non-ribosomal peptide s 72.9 9 0.00031 41.2 8.8 122 57-184 212-337 (570)
53 3o83_A Peptide arylation enzym 72.3 15 0.00051 39.2 10.3 105 57-167 189-298 (544)
54 4dg8_A PA1221; ANL superfamily 71.4 11 0.00038 41.0 9.2 123 57-185 162-288 (620)
55 3g7s_A Long-chain-fatty-acid-- 70.9 42 0.0015 35.6 13.6 106 221-330 33-140 (549)
56 3r44_A Fatty acyl COA syntheta 70.3 20 0.00068 37.9 10.7 102 58-166 169-274 (517)
57 3c5e_A Acyl-coenzyme A synthet 70.3 25 0.00085 37.7 11.6 123 57-184 204-333 (570)
58 3ni2_A 4-coumarate:COA ligase; 69.3 33 0.0011 36.3 12.2 101 220-330 35-137 (536)
59 3kxw_A Saframycin MX1 syntheta 68.6 20 0.00069 38.5 10.5 123 57-184 165-300 (590)
60 3ivr_A Putative long-chain-fat 68.5 33 0.0011 36.0 11.9 99 220-330 19-119 (509)
61 3rix_A Luciferase, luciferin 4 67.7 20 0.00069 38.2 10.1 103 222-331 35-139 (550)
62 1v25_A Long-chain-fatty-acid-C 66.3 52 0.0018 34.8 13.1 100 221-328 32-133 (541)
63 3rg2_A Enterobactin synthase c 64.9 74 0.0025 34.3 14.1 121 58-184 183-313 (617)
64 1t5h_X 4-chlorobenzoyl COA lig 61.7 63 0.0022 33.7 12.5 97 221-327 16-116 (504)
65 3t5a_A Long-chain-fatty-acid-- 60.8 76 0.0026 32.7 12.9 107 220-330 37-148 (480)
66 1ry2_A Acetyl-coenzyme A synth 59.9 61 0.0021 35.4 12.4 99 220-324 95-196 (663)
67 3nyq_A Malonyl-COA ligase; A/B 58.8 48 0.0016 34.7 10.9 103 57-166 153-259 (505)
68 4fuq_A Malonyl COA synthetase; 58.2 53 0.0018 34.4 11.1 86 240-328 27-114 (503)
69 1amu_A GRSA, gramicidin synthe 58.1 74 0.0025 33.8 12.4 94 221-326 53-148 (563)
70 3etc_A AMP-binding protein; ad 56.3 71 0.0024 34.2 11.9 97 220-323 69-167 (580)
71 1pg4_A Acetyl-COA synthetase; 55.1 83 0.0028 34.2 12.4 97 221-323 90-188 (652)
72 2v7b_A Benzoate-coenzyme A lig 54.6 50 0.0017 34.7 10.3 97 221-329 37-135 (529)
73 2zbc_A 83AA long hypothetical 53.1 20 0.00069 26.8 5.0 59 532-608 16-74 (83)
74 3ezx_A MMCP 1, monomethylamine 51.9 1.3E+02 0.0044 27.4 11.2 54 267-320 92-149 (215)
75 2vsq_A Surfactin synthetase su 51.7 28 0.00097 41.6 8.4 123 57-185 605-732 (1304)
76 3tbh_A O-acetyl serine sulfhyd 48.8 59 0.002 32.0 9.0 64 96-159 63-127 (334)
77 3tsy_A Fusion protein 4-coumar 48.3 89 0.003 35.9 11.7 99 220-328 74-174 (979)
78 2cvi_A 75AA long hypothetical 46.5 22 0.00074 26.8 4.2 55 531-603 15-69 (83)
79 3vc3_A Beta-cyanoalnine syntha 45.1 71 0.0024 31.6 8.9 70 90-159 73-142 (344)
80 3l8c_A D-alanine--poly(phospho 40.4 89 0.003 32.7 9.4 81 240-323 28-110 (521)
81 3gqw_A Fatty acid AMP ligase; 38.7 1.7E+02 0.0057 30.9 11.4 87 240-329 48-143 (576)
82 3ite_A SIDN siderophore synthe 38.3 2.4E+02 0.008 29.7 12.5 99 220-323 33-135 (562)
83 4eez_A Alcohol dehydrogenase 1 35.9 74 0.0025 31.2 7.4 76 79-157 137-215 (348)
84 2djw_A Probable transcriptiona 27.2 29 0.001 26.7 2.1 55 531-603 15-69 (92)
85 3ndn_A O-succinylhomoserine su 26.4 4E+02 0.014 26.7 11.3 23 146-168 141-163 (414)
86 3jv7_A ADH-A; dehydrogenase, n 26.1 1.7E+02 0.0057 28.6 8.1 78 79-159 143-225 (345)
87 3ri6_A O-acetylhomoserine sulf 25.5 1.7E+02 0.0058 29.8 8.2 63 107-169 100-165 (430)
88 3ist_A Glutamate racemase; str 25.1 93 0.0032 29.6 5.6 63 48-117 19-81 (269)
89 1h2b_A Alcohol dehydrogenase; 24.6 1.8E+02 0.0061 28.7 8.0 63 93-158 175-239 (359)
90 3s2e_A Zinc-containing alcohol 24.1 1.8E+02 0.0061 28.3 7.8 75 79-157 140-217 (340)
91 2cf5_A Atccad5, CAD, cinnamyl 24.1 1.5E+02 0.0052 29.1 7.3 77 79-158 153-233 (357)
92 2q3b_A Cysteine synthase A; py 24.0 2.9E+02 0.0098 26.5 9.2 63 96-159 59-122 (313)
93 3two_A Mannitol dehydrogenase; 23.3 1.7E+02 0.0057 28.6 7.5 73 79-155 150-225 (348)
94 1z7w_A Cysteine synthase; tran 23.3 2.9E+02 0.0099 26.6 9.1 64 96-159 58-122 (322)
95 4aec_A Cysteine synthase, mito 23.1 2.7E+02 0.0091 28.4 8.9 63 96-158 166-229 (430)
96 2e1c_A Putative HTH-type trans 22.9 1.6E+02 0.0054 25.6 6.4 60 532-610 101-160 (171)
97 3i4p_A Transcriptional regulat 22.4 1.9E+02 0.0065 24.7 6.8 60 531-609 79-138 (162)
98 3fpc_A NADP-dependent alcohol 21.9 1.4E+02 0.0048 29.3 6.5 75 79-157 140-218 (352)
99 3dwg_A Cysteine synthase B; su 21.7 3.2E+02 0.011 26.4 9.1 62 97-159 66-128 (325)
100 2egu_A Cysteine synthase; O-ac 21.7 3.1E+02 0.011 26.2 8.9 62 97-159 58-120 (308)
101 3goh_A Alcohol dehydrogenase, 21.2 1.8E+02 0.006 28.0 7.0 72 79-155 116-190 (315)
102 2cyy_A Putative HTH-type trans 21.1 1.9E+02 0.0063 24.3 6.3 61 531-610 80-140 (151)
103 3ju7_A Putative PLP-dependent 20.7 2E+02 0.007 28.4 7.6 63 91-156 66-135 (377)
104 3tqh_A Quinone oxidoreductase; 20.6 2.2E+02 0.0074 27.4 7.5 74 79-157 126-203 (321)
105 1yqd_A Sinapyl alcohol dehydro 20.2 2.6E+02 0.0088 27.6 8.1 62 93-157 177-239 (366)
106 1zsy_A Mitochondrial 2-enoyl t 20.1 2E+02 0.0068 28.2 7.3 78 79-157 140-223 (357)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.4e-73 Score=628.29 Aligned_cols=511 Identities=22% Similarity=0.267 Sum_probs=397.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeeccC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 006729 33 KDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDG--KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYG 110 (633)
Q Consensus 33 ~~~~~~~~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~--~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~ 110 (633)
..++|..+....++.++|+++++++|+++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+++||+|+|++
T Consensus 8 ~~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 84 (549)
T 3g7s_A 8 KIGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCI 84 (549)
T ss_dssp CCCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 3445555566789999999999999999999987 42 123345899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHH
Q 006729 111 VNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQRE 190 (633)
Q Consensus 111 ~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 190 (633)
+|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .+..++..+..
T Consensus 85 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------ 156 (549)
T 3g7s_A 85 PNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------ 156 (549)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS------
T ss_pred CCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC------
Confidence 9999999999999999999999999999999999999999999999988776665544332 24555555432
Q ss_pred HHhhcCceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcE
Q 006729 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (633)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (633)
..++.++...............++++++|+|||||||.||+|.+||+++.+.+..+...+ ++..+|+
T Consensus 157 --------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~ 223 (549)
T 3g7s_A 157 --------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDT 223 (549)
T ss_dssp --------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCE
T ss_pred --------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCE
Confidence 234555555443322222222348999999999999999999999999999999988877 8999999
Q ss_pred EEEeCchHHHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHH
Q 006729 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (633)
Q Consensus 271 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (633)
+++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++........
T Consensus 224 ~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------- 292 (549)
T 3g7s_A 224 IVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT----------- 292 (549)
T ss_dssp EECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-----------
T ss_pred EEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-----------
Confidence 9999999999999887788999999999866 9999999999999999999999999987754332100
Q ss_pred HHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHh----cC---CeEEEeeccccC
Q 006729 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC---AHVLQGYGLTET 422 (633)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~----~~---~~l~~~yG~tE~ 422 (633)
.+++++|.+++||+++++++.+.+.+. ++ +.+++.||+||+
T Consensus 293 --------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 340 (549)
T 3g7s_A 293 --------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEA 340 (549)
T ss_dssp --------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGG
T ss_pred --------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEecccc
Confidence 122689999999999999999999887 56 899999999999
Q ss_pred CCcccccCCCCCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc---cCC--ee
Q 006729 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM---VDG--WF 497 (633)
Q Consensus 423 ~~~~~~~~~~~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~---~~g--~~ 497 (633)
+.+++...........++|+|+++++++|+| +++ ..++++|+.|||+|+|+.++.|||++|+.+.+.| .+| ||
T Consensus 341 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~ 418 (549)
T 3g7s_A 341 CPMVTTNPPLRLDKSTTQGVPMSDIELKVIS-LED-GRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418 (549)
T ss_dssp SSEEEECCGGGGGGTTSCCEECTTCEEEEEC-SSS-CCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEE
T ss_pred chhhhcCCccccCcCCCccccCCCCEEEEEe-CCC-CcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceE
Confidence 9888776655545568999999999999998 333 3567788999999999999999999999999998 677 99
Q ss_pred ecCceEEECCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCc
Q 006729 498 HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPK 577 (633)
Q Consensus 498 ~TGD~~~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (633)
+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..+..++++.+ ..++
T Consensus 419 ~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv-------~~~~ 490 (549)
T 3g7s_A 419 RTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIV-------LKPE 490 (549)
T ss_dssp EEEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEE-------ECST
T ss_pred ccCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEE-------ECCC
Confidence 99999999999999999999999997 899999999999999999999999999999877766555433 2333
Q ss_pred c-cCCCchhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 578 L-ACPFDVEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 578 ~-~~~~~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
. ...+.++|+++|+++| |++|. ++++++ +|+|+++|.+|+.|.
T Consensus 491 ~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~-----lP~t~~GKi~R~~L~ 537 (549)
T 3g7s_A 491 YRGKVDEEDIIEWVRERISGYKRVREVEFVEE-----LPRTASGKLLRRLLR 537 (549)
T ss_dssp TTTSCCHHHHHHHHHTTCC-----CCCCEEEE-----CC-------------
T ss_pred ccCcCCHHHHHHHHHHhccCcccceEEEEecc-----CCCCCCcCEeHHHHH
Confidence 2 3455678999999988 99999 667765 555666778888775
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.4e-72 Score=619.38 Aligned_cols=501 Identities=22% Similarity=0.268 Sum_probs=410.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006729 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~ 120 (633)
|...++.++|+++++++|+++|+++. ++ + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 55689999999999999999999874 21 1 48999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEe
Q 006729 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (633)
Q Consensus 121 lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (633)
|||+++|++++|+++.++.+++.+++++++++++|++......+.+.... ..+ .++.++.... ...
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~-----------~~~ 157 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE--SDV-KVMCVDSAPD-----------GCL 157 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHH--HTC-EEEESSCCCT-----------TCE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhh--cCc-eEEEecCCCC-----------Ccc
Confidence 99999999999999999999999999999999999998766555443221 122 3444432211 234
Q ss_pred eHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHH
Q 006729 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (633)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~ 280 (633)
.+.++...... ..+.....++++++|+|||||||.||+|.+||+++.+.+........ ....+..+|++++.+|++|.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~h~ 235 (536)
T 3ni2_A 158 HFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-PNLYFHSEDVILCVLPMFHI 235 (536)
T ss_dssp ETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-CSSCCCTTCCEEECSCTTSH
T ss_pred CHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-ccccCCCCCEEEEecChHHH
Confidence 55565543322 22334567899999999999999999999999999988776543210 01157899999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhh
Q 006729 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (633)
Q Consensus 281 ~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 236 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------- 289 (536)
T 3ni2_A 236 YALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP-------------------------- 289 (536)
T ss_dssp HHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS--------------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc--------------------------
Confidence 99865 6677999999999865 9999999999999999999999999876521
Q ss_pred hcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccC----CCC
Q 006729 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSL----PNE 433 (633)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~----~~~ 433 (633)
..+ ..+++++|.+++||+++++++.+.+++.+ ++.+++.||+||++.++..+. ...
T Consensus 290 -----------~~~--------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~ 350 (536)
T 3ni2_A 290 -----------DLD--------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPF 350 (536)
T ss_dssp -----------CGG--------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCC
T ss_pred -----------ccc--------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccc
Confidence 111 12236899999999999999999999988 899999999999987655432 122
Q ss_pred CcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCCcEE
Q 006729 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLK 512 (633)
Q Consensus 434 ~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~ 512 (633)
....+++|+|+++++++|+| +++ ..++++|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||+++
T Consensus 351 ~~~~~~~G~~~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~ 428 (536)
T 3ni2_A 351 DIKPGACGTVVRNAEMKIVD-PET-GASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELF 428 (536)
T ss_dssp CCCTTCCCEECSSCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred cCCCCCeeEeCCCcEEEEEe-CCC-CcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEE
Confidence 23457899999999999998 443 3677889999999999999999999999999999 78999999999999999999
Q ss_pred EeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHH
Q 006729 513 IIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLS 592 (633)
Q Consensus 513 i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 592 (633)
|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+ ..+....+.++|+++|++
T Consensus 429 ~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv--------~~~~~~~~~~~l~~~l~~ 499 (536)
T 3ni2_A 429 IVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVV--------KSEKSQATEDEIKQYISK 499 (536)
T ss_dssp EEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE--------ECTTCCCCHHHHHHHHHT
T ss_pred EEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEE--------ecCCCCCCHHHHHHHHHH
Confidence 99999999998 799999999999999999999999999999887777666443 122334556799999999
Q ss_pred HH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 593 LL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 593 ~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
++ |++|. ++++++ +|+|+++|..|++|.
T Consensus 500 ~l~~~~~p~~i~~v~~-----lP~t~~GKi~R~~L~ 530 (536)
T 3ni2_A 500 QVIFYKRIKRVFFIEA-----IPKAPSGKILRKNLK 530 (536)
T ss_dssp TSCGGGCCSEEEECSC-----CCBCTTSCBCHHHHH
T ss_pred hccCCccccEEEEEec-----CCCCCCCCeeHHHHH
Confidence 88 99999 656655 555566677777664
No 3
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4e-72 Score=619.65 Aligned_cols=498 Identities=14% Similarity=0.184 Sum_probs=336.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006729 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (633)
Q Consensus 42 ~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~l 121 (633)
.+.++.++|+++++++|+++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999974 3 489999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChh----hHhhcCCCcccCccEEEEecCCChhhHHHHhhcCc
Q 006729 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (633)
Q Consensus 122 A~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 197 (633)
||+++|++++|+++.++.+++.++++++++++++++..... ...............++..+....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 99999999999999999999999999999999999876531 111111112234455555543311
Q ss_pred eEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCch
Q 006729 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (633)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (633)
...+.++...............++++++++|||||||.||+|.+||+++.+.+......+ ++.++|++++.+|+
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~ 241 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPA 241 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCc
Confidence 123444444333323333456789999999999999999999999999999999988887 89999999999999
Q ss_pred HHHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhH
Q 006729 278 AHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (633)
Q Consensus 278 ~~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (633)
+|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 242 ~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------ 303 (544)
T 3o83_A 242 PHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK------------------ 303 (544)
T ss_dssp TSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH------------------
T ss_pred ceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc------------------
Confidence 99999875 6778999999999866 99999999999999999999999999877432111
Q ss_pred HhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCCC
Q 006729 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (633)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~ 434 (633)
. .+++||.+++||+++++++.+++.+.+++++++.||+||++..+........
T Consensus 304 -------------------~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~ 356 (544)
T 3o83_A 304 -------------------D--------QIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDE 356 (544)
T ss_dssp -------------------H--------HHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHH
T ss_pred -------------------c--------cCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchh
Confidence 1 1168999999999999999999999999999999999999865554433333
Q ss_pred cccCCCCCcc-CCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCCcEE
Q 006729 435 SMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLK 512 (633)
Q Consensus 435 ~~~~s~G~p~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~ 512 (633)
....++|+|+ ++++++|+| +++ .++++|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||+++
T Consensus 357 ~~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~ 433 (544)
T 3o83_A 357 QIFTTQGRPISSDDEIKIVD-EQY--REVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLR 433 (544)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEE
T ss_pred hccCCCceecCCCcEEEEEC-CCC--CCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEE
Confidence 3457899996 899999998 544 467788999999999999999999999999999 79999999999999999999
Q ss_pred EeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHH
Q 006729 513 IIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLS 592 (633)
Q Consensus 513 i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 592 (633)
|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+. .....+..++++++++
T Consensus 434 ~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~---------~~~~~~~~~l~~~~~~ 503 (544)
T 3o83_A 434 VVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVS---------RNPELKAVVLRRHLME 503 (544)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEe---------CCCCCCHHHHHHHHHh
Confidence 99999999996 8999999999999999999999999999999888877765552 1133445689999988
Q ss_pred -HH--Hhhhh-hhhheeccCCCCCCCceeeecCceeeEEE
Q 006729 593 -LL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLCCVI 628 (633)
Q Consensus 593 -~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~~~ 628 (633)
++ |++|. +++++ .+|+|+++|.+|++|....
T Consensus 504 ~~l~~~~~P~~i~~v~-----~lP~t~~GKi~r~~L~~~~ 538 (544)
T 3o83_A 504 LGIAQYKLPDQIKLIE-----SLPLTAVGKVDKKQLRSIL 538 (544)
T ss_dssp ----------------------------------------
T ss_pred CCCCcccCCcEEEEec-----cCCCCCCCCCcHHHHHHHH
Confidence 56 99999 55665 5566677788998887543
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.6e-71 Score=616.52 Aligned_cols=503 Identities=17% Similarity=0.153 Sum_probs=399.0
Q ss_pred CCCCCHH-HHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006729 41 PGMESCW-DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (633)
Q Consensus 41 ~~~~~i~-~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~ 119 (633)
+...|+. ++|+++++++|+++|+++. +. .+..+++||+||.++++++|+.|++.|+++||+|+|+++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 3444555 9999999999999999986 33 23447899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCCh--hhHhhcCCCcccCc-cEEEEecCCChhhHHHHhhcC
Q 006729 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYG 196 (633)
Q Consensus 120 ~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~ 196 (633)
+|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.+.... .+.+ ..++.++....
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAE-CGDIPLKKAKVGGDVL---------- 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHH-HCSCCCEEEEESSSCC----------
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhh-CCCcceEEEEeCCccc----------
Confidence 999999999999999999999999999999999999987754 333222211 1222 34455443211
Q ss_pred ceEeeHHHHHhcccCCCCCC---CCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEE
Q 006729 197 LAVYSWDEFLQLGENKQFDL---PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (633)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 273 (633)
..+.++.+.+.........+ ....++++++|+|||||||.||+|.++|.++...+......+ ++..++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 13456666665543322211 245789999999999999999999999999888777655444 7889999999
Q ss_pred eCchHHHHHHHH-HHHHHHcCcEEEEEc---CCHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHH
Q 006729 274 YLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (633)
Q Consensus 274 ~~pl~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (633)
..|++|..++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.+++..
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------- 334 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED----------------- 334 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-----------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-----------------
Confidence 999998888765 667799999998874 38999999999999999999999999875520
Q ss_pred HHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCccccc
Q 006729 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429 (633)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~ 429 (633)
....++++||.+++||+++++++.+++.+.+|+++++.||+||++..+...
T Consensus 335 -----------------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 335 -----------------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp -----------------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred -----------------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence 011233689999999999999999999999999999999999998766554
Q ss_pred CCCCCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEec-----CcccccccCChhhhhccccCCeeecCceEE
Q 006729 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-----STVFSGYYKREDLTKEVMVDGWFHTGDIGE 504 (633)
Q Consensus 430 ~~~~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g-----~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~ 504 (633)
... ...++++|+|+++++++|+| +++ .++++|+.|||+|+| +.++.||+++|+.+.+.|.+|||+|||+|+
T Consensus 386 ~~~-~~~~~~~G~p~~~~~v~ivd-~~g--~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~ 461 (580)
T 3etc_A 386 PWM-EPKPGSIGKPTPGYKIELMD-RDG--RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW 461 (580)
T ss_dssp TTS-CCCTTCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred CCC-CCCCCccccCCCCCEEEEEC-CCC--CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence 433 33458999999999999999 554 467788999999997 789999999999999999999999999999
Q ss_pred ECCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCC--C
Q 006729 505 WQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACP--F 582 (633)
Q Consensus 505 ~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 582 (633)
+|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..++.+.++.+ +.++.... .
T Consensus 462 ~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv-------~~~~~~~~~~~ 533 (580)
T 3etc_A 462 MDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIV-------LTKDYTPSDSL 533 (580)
T ss_dssp ECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE-------ECTTCCCCHHH
T ss_pred ECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEE-------ECCCCCCCHHH
Confidence 9999999999999999998 699999999999999999999999999999988877776544 23332221 1
Q ss_pred chhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceeeE
Q 006729 583 DVEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLCC 626 (633)
Q Consensus 583 ~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~ 626 (633)
.++|+++|++++ |++|+ +++++ .+|+|+++|.+|++|..
T Consensus 534 ~~~l~~~l~~~l~~~~~P~~i~~v~-----~lP~t~sGKi~R~~Lr~ 575 (580)
T 3etc_A 534 KNELQDHVKNVTAPYKYPRIIEFVP-----ELPKTISGKIRRVEIRD 575 (580)
T ss_dssp HHHHHHHHHHHSCGGGCCSEEEEEC-----C----------------
T ss_pred HHHHHHHHHhhCCCccCCeEEEEeC-----CCCCCCCcCCcHHHHHh
Confidence 357999999988 99999 55665 46666777888888764
No 5
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.4e-71 Score=614.88 Aligned_cols=496 Identities=22% Similarity=0.277 Sum_probs=378.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006729 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (633)
Q Consensus 43 ~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA 122 (633)
..++.++|+++++++|+++|+++. ++ +..+++||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999863 21 2236899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEeeH
Q 006729 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (633)
Q Consensus 123 ~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (633)
|+++|++++|+++.++.+++.+++++++++++|++.+....+...... .+.++.++.++..... ...++
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAPE----------GYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCCT----------TCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCCccEEEEecCCCCc----------ccccH
Confidence 999999999999999999999999999999999998766554433221 2445566665543210 12345
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHH--HHhhhhhccCCCCCcEEEEeCchHHH
Q 006729 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV--KCLLESVNEKLTSEDVYVSYLPLAHI 280 (633)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~~~ 280 (633)
.+++..... .....++++++|+|||||||.||+|.+||+++....... ...+ ++.++|++++.+|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 555432211 134467899999999999999999999999998776552 2333 67899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhh
Q 006729 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (633)
Q Consensus 281 ~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 289 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------- 289 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC----------------------
Confidence 998777788999999999863 89999999999999999999999999877543221
Q ss_pred hcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCC-----
Q 006729 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----- 433 (633)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~----- 433 (633)
.+++++|.+++||+++++++.+++ +.+|+++++.||+||++.+++......
T Consensus 290 -----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 290 -----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp -----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence 122689999999999999999999 668999999999999998776654331
Q ss_pred -----CcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhcccc-CCeeecCceEEECC
Q 006729 434 -----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQP 507 (633)
Q Consensus 434 -----~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGD~~~~~~ 507 (633)
.....++|+|+++++++|+| +++...+.+.++.|||+|+||.++.|||++|+.+.+.|. +|||+|||+|++|+
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence 01247899999999999999 666555544457999999999999999999999999994 99999999999999
Q ss_pred CCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHH
Q 006729 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVC 587 (633)
Q Consensus 508 dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 587 (633)
||+++|+||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+.. ....+.++|+
T Consensus 425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~---------~~~~~~~~l~ 494 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR---------GEKPTPEELN 494 (541)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------
T ss_pred CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC---------CCCCCHHHHH
Confidence 9999999999999997 89999999999999999999999999999987777777755421 2233456899
Q ss_pred HHHHH-HH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 588 CFLLS-LL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 588 ~~l~~-~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
+++++ +| |++|. ++++++ +|+|+++|.+|++|.
T Consensus 495 ~~~~~~~L~~~~~P~~i~~v~~-----lP~t~~GKi~r~~L~ 531 (541)
T 1v25_A 495 EHLLKAGFAKWQLPDAYVFAEE-----IPRTSAGKFLKRALR 531 (541)
T ss_dssp ------CCCTTTSCSBC-------------------CCTTHH
T ss_pred HHHHhccCccccCCcEEEEeCC-----CCCCCccCeeHHHHH
Confidence 99988 67 99999 656654 566777888888774
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.2e-72 Score=617.43 Aligned_cols=490 Identities=18% Similarity=0.230 Sum_probs=401.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006729 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (633)
Q Consensus 43 ~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA 122 (633)
..++.++|+++++++|+++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999874 3 4899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChh----hHhhcCCCcccCccEEEEecCCChhhHHHHhhcCce
Q 006729 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (633)
Q Consensus 123 ~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 198 (633)
|+++|++++|+++.++.+++.+++++++++++|+++.... ..........+.++.++..++...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111111133444544432110
Q ss_pred EeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchH
Q 006729 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (633)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (633)
+.++.... ..+.......++++++++|||||||.||+|.+||+++.+.+......+ ++.++|++++.+|++
T Consensus 163 ---~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 163 ---FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp ---SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred ---hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 11111111 111222345678999999999999999999999999999998887777 789999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHH
Q 006729 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (633)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (633)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 293 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------- 293 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------
Confidence 9999874 7778999999999865 9999999999999999999999999987643221
Q ss_pred hhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCCCc
Q 006729 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (633)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~ 435 (633)
..++++||.+++||+++++++.+++++.+|+.+++.||+||++..+.........
T Consensus 294 -------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 294 -------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp -------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 1123689999999999999999999999999999999999965443322221122
Q ss_pred ccCCCCCccCCc-eEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCCcEEE
Q 006729 436 MIGTVGPPVPNV-DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (633)
Q Consensus 436 ~~~s~G~p~~~~-~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~i 513 (633)
...++|+|+++. +++|+| +++ .++++|+.|||+|+|+.++.|||++|+.+.+.| .+|||+|||+|++|+||+++|
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHD--RDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTS--CBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCC--CCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 347899999764 799998 544 567788999999999999999999999999999 699999999999999999999
Q ss_pred eeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHH
Q 006729 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSL 593 (633)
Q Consensus 514 ~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 593 (633)
+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+ +.....+.++|+++|+++
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv---------~~~~~~~~~~l~~~l~~~ 495 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFII---------PRDEAPKAAELKAFLRER 495 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE---------ESSSCCCHHHHHHHHHHT
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEE---------ECCCCCCHHHHHHHHHhC
Confidence 9999999996 899999999999999999999999999999877776666443 122344567999999997
Q ss_pred -H--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 594 -L--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 594 -l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
+ |++|. ++++++ +|+|+++|.+|++|.
T Consensus 496 ~L~~~~~P~~i~~v~~-----lP~t~~GKi~r~~L~ 526 (539)
T 1mdb_A 496 GLAAYKIPDRVEFVES-----FPQTGVGKVSKKALR 526 (539)
T ss_dssp TCCGGGSCSEEEECSS-----CCBCTTSCBCHHHHH
T ss_pred CCCcccCCCEEEEecc-----CCCCCCcCEeHHHHH
Confidence 7 99999 656654 556667778887764
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-71 Score=612.33 Aligned_cols=493 Identities=22% Similarity=0.270 Sum_probs=403.8
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006729 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (633)
Q Consensus 39 ~~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~ 118 (633)
+-+++.|+.++|+++++++|+++|+++. +. ..++||+||.++++++|+.|.+.|+++||+|+++++|++++++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 83 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC 83 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHH
Confidence 3467799999999999999999999975 22 1489999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCce
Q 006729 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (633)
Q Consensus 119 ~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 198 (633)
++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++.....
T Consensus 84 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------- 148 (517)
T 3r44_A 84 LFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIGA-------------- 148 (517)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEEH--------------
T ss_pred HHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccCc--------------
Confidence 99999999999999999999999999999999999999987655443322111 111111111100
Q ss_pred EeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchH
Q 006729 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (633)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (633)
.++.+...... ...+.....++++++|+|||||||.||+|.+||+++.+.+......+ ++..+|++++.+|++
T Consensus 149 -~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 221 (517)
T 3r44_A 149 -DSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMF 221 (517)
T ss_dssp -HHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTT
T ss_pred -ccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchH
Confidence 11233333222 12233455789999999999999999999999999999999988877 899999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhh
Q 006729 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (633)
Q Consensus 279 ~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (633)
|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....
T Consensus 222 ~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 278 (517)
T 3r44_A 222 HVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF----------------------- 278 (517)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-----------------------
T ss_pred HHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----------------------
Confidence 99999876666669999998866 999999999999999999999999988663211
Q ss_pred hhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCC-Ccc
Q 006729 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSM 436 (633)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~~~ 436 (633)
...+++++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ...
T Consensus 279 ----------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 335 (517)
T 3r44_A 279 ----------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRK 335 (517)
T ss_dssp ----------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTT
T ss_pred ----------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCcccccc
Confidence 12233689999999999999999999987 999999999999988666544332 334
Q ss_pred cCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCCCcEEEeee
Q 006729 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDR 516 (633)
Q Consensus 437 ~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~i~GR 516 (633)
.+++|+|++++++++++ +++. ++++| .|||+|+|+.++.|||++|+.+.+.|.+|||+|||+|++|+||+++|+||
T Consensus 336 ~~~~G~~~~~~~~~i~d-~~~~--~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR 411 (517)
T 3r44_A 336 AGSAGRATMFTDVAVRG-DDGV--IREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDR 411 (517)
T ss_dssp TTCCBEECTTEEEEEEC-TTSC--EESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEC
T ss_pred CCCCCcCCCCeEEEEEC-CCCC--CCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecC
Confidence 58899999999999998 5543 44455 79999999999999999999999999999999999999999999999999
Q ss_pred ccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHH--
Q 006729 517 KKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLL-- 594 (633)
Q Consensus 517 ~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l-- 594 (633)
.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..+..++++.. ......+.++|+++|+++|
T Consensus 412 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~---------~~~~~~~~~~l~~~l~~~L~~ 481 (517)
T 3r44_A 412 LKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVV---------ADQNEVSEQQIVEYCGTRLAR 481 (517)
T ss_dssp GGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE---------ECTTTCCHHHHHHHHHHHSCG
T ss_pred CcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEE---------CCCCCCCHHHHHHHHHHhCCC
Confidence 9999997 799999999999999999999999999999887776665321 2223455679999999988
Q ss_pred Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 595 HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 595 ~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
|++|. +++++ .+|+|+++|.+|++|.
T Consensus 482 ~~~P~~i~~v~-----~lP~t~~GKi~R~~L~ 508 (517)
T 3r44_A 482 YKLPKKVIFAE-----AIPRNPTGKILKTVLR 508 (517)
T ss_dssp GGSCSEEEECS-----CCCBCTTCCBCHHHHH
T ss_pred CCCCCEEEEEC-----CCCCCCCcCccHHHHH
Confidence 99999 55655 4556667778887764
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=6.4e-72 Score=619.07 Aligned_cols=514 Identities=20% Similarity=0.267 Sum_probs=336.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 006729 36 FPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (633)
Q Consensus 36 ~~~~~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~ 115 (633)
.|.++....|+.++|+++++++|+++|++... ++.++ +++||+||.++++++|+.|.+.|+++||+|+++++|+++
T Consensus 12 ~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e 87 (550)
T 3rix_A 12 APFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ 87 (550)
T ss_dssp CCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT
T ss_pred CCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc
Confidence 35555667899999999999999999986220 22122 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhc
Q 006729 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (633)
Q Consensus 116 ~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 195 (633)
+++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+...... .+.+..++.++.....
T Consensus 88 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 158 (550)
T 3rix_A 88 FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQKIIIMDSKTDY-------- 158 (550)
T ss_dssp THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHH-CTTCCEEEETTCSSCB--------
T ss_pred HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhh-CCCcceEEEEcCCccc--------
Confidence 9999999999999999999999999999999999999999998876665543322 2455666666543211
Q ss_pred CceEeeHHHHHhcccCCC------CCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCc
Q 006729 196 GLAVYSWDEFLQLGENKQ------FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED 269 (633)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d 269 (633)
....++.++........ .+.....++++++|+|||||||.||+|.+||+++...+......+. ..++.+++
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~--~~~~~~~~ 235 (550)
T 3rix_A 159 -QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDT 235 (550)
T ss_dssp -TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCTTC
T ss_pred -cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc--cccCCCCc
Confidence 12344555554332211 1112224578999999999999999999999999988777654310 12678899
Q ss_pred EEEEeCchHHHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHH
Q 006729 270 VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (633)
Q Consensus 270 ~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (633)
++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 299 (550)
T 3rix_A 236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST---------------- 299 (550)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC----------------
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc----------------
Confidence 99999999999999888888999999999865 9999999999999999999999999886621
Q ss_pred HHHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCe-EEEeeccccCCCccc
Q 006729 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTF 427 (633)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~-l~~~yG~tE~~~~~~ 427 (633)
..+ ..++++||.+++||+++++++.+++.+.++.. +++.||+||++++++
T Consensus 300 ---------------------~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~ 350 (550)
T 3rix_A 300 ---------------------LID--------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350 (550)
T ss_dssp ---------------------GGG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEE
T ss_pred ---------------------ccc--------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcccccee
Confidence 111 12236899999999999999999999999875 999999999998877
Q ss_pred ccCCCCCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEEC
Q 006729 428 VSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQ 506 (633)
Q Consensus 428 ~~~~~~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~ 506 (633)
....... ..+++|+|+++++++|+| +++ ..++++|+.|||+|+|+.++.|||++|+.+.+.| .+|||+|||+|++|
T Consensus 351 ~~~~~~~-~~~~vG~~~~~~~~~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~ 427 (550)
T 3rix_A 351 ITPEGDD-KPGAVGKVVPFFEAKVVD-LDT-GKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427 (550)
T ss_dssp ECCTTCC-CTTEEEEECTTCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cCCCCCC-CCCCcccccCCcEEEEEe-CCC-CcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe
Confidence 7665443 458899999999999998 433 3677889999999999999999999999999999 79999999999999
Q ss_pred CCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhH
Q 006729 507 PDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEV 586 (633)
Q Consensus 507 ~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 586 (633)
+||+++++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+. . .....+.++|
T Consensus 428 ~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~-------~-~~~~~~~~~l 498 (550)
T 3rix_A 428 EDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL-------E-HGKTMTEKEI 498 (550)
T ss_dssp TTCCEEEC------------------------------------------------------------------------
T ss_pred CCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEe-------c-CCCCCCHHHH
Confidence 99999999999999997 8999999999999999999999999999999888877765542 2 2233456789
Q ss_pred HHHHHHHH--H-hhhh-hhhheeccCCCCCCCceeeecCceeeEE
Q 006729 587 CCFLLSLL--H-ILPT-VLFLCILPVSPLPTDGVFISKKKKLCCV 627 (633)
Q Consensus 587 ~~~l~~~l--~-~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~~ 627 (633)
++++++++ + ++|. ++++++ +|+|+.+|..|++|...
T Consensus 499 ~~~~~~~l~~~~~~~~~i~~v~~-----lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 499 VDYVASQVTTAKKLRGGVVFVDE-----VPKGLTGKLDARKIREI 538 (550)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHhcccccccCCceEEEee-----cCCCCCcceeHHHHHHH
Confidence 99999887 4 5665 666655 55666777888888654
No 9
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4e-71 Score=606.39 Aligned_cols=484 Identities=18% Similarity=0.236 Sum_probs=393.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006729 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (633)
Q Consensus 43 ~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA 122 (633)
|+|+.++|+++++++|+++|+.+. +. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---AR--G--LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TT--T--EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CC--C--ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 21 1 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeecCCCCChHHHHHHHhccCceEEEe--cCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEe
Q 006729 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV--EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (633)
Q Consensus 123 ~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (633)
|+++|++++|+++.++.+++.+++++++++++++ +......+..... .++ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eE---------------------
Confidence 9999999999999999999999999999999999 6654444312221 111 22
Q ss_pred eHHHHHhccc----CCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCC--CCCcEEEEe
Q 006729 201 SWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSY 274 (633)
Q Consensus 201 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 274 (633)
.++++..... ..+.......++++++++|||||||.||+|.+||+++.+.+......+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1222221110 111112345678999999999999999999999999999888877666 66 789999999
Q ss_pred CchHHHHHHH-HHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q 006729 275 LPLAHIFDRA-IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (633)
Q Consensus 275 ~pl~~~~g~~-~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (633)
+|++|.+++. .++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 266 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------- 266 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence 9999999985 47788999999999865 99999999999999999999999999876421100
Q ss_pred hHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCC
Q 006729 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (633)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~ 432 (633)
...++++||.+++||+++++++.+++++.++..+++.||+||++. +....
T Consensus 267 ---------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-- 316 (504)
T 1t5h_X 267 ---------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR-- 316 (504)
T ss_dssp ---------------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred ---------------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence 001226899999999999999999999999999999999999933 32222
Q ss_pred CCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEe-cCcccccccCChhhhhccccCCeeecCceEEECCCCcE
Q 006729 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSL 511 (633)
Q Consensus 433 ~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~-g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l 511 (633)
....+++|.|.+++++++++.++....++++|+.|||+|+ |+.++.||+++|+.+.+.|.+|||+|||+|++|+||++
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1234789999999999999833333467788999999999 99999999999999999999999999999999999999
Q ss_pred EEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHH
Q 006729 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLL 591 (633)
Q Consensus 512 ~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 591 (633)
+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+ ..++ ...+.++|+++|+
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv-------~~~~-~~~~~~~l~~~~~ 466 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVV-------PRLG-ETLSADALDTFCR 466 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEE-------ECTT-CCCCHHHHHHHHH
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEE-------ecCC-cCcCHHHHHHHHh
Confidence 999999999997 899999999999999999999999999998876666655433 1222 2345678999999
Q ss_pred H-HH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 592 S-LL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 592 ~-~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
+ +| |++|+ ++++++ +|+|+.+|.+|++|.
T Consensus 467 ~~~L~~~~~P~~i~~v~~-----lP~t~~GKi~r~~L~ 499 (504)
T 1t5h_X 467 SSELADFKRPKRYFILDQ-----LPKNALNKVLRRQLV 499 (504)
T ss_dssp TSSCCGGGSCSEEEECSC-----CCBCTTSCBCHHHHH
T ss_pred hccCcccccceEEEEhhh-----CCCCCCCCEeHHHHH
Confidence 8 77 99999 666655 556667778887763
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.1e-70 Score=606.23 Aligned_cols=502 Identities=22% Similarity=0.282 Sum_probs=404.4
Q ss_pred CCCCCHHH-HHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006729 41 PGMESCWD-VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (633)
Q Consensus 41 ~~~~~i~~-~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~ 119 (633)
|.+.++.+ +|.++++++ +++|+++. ++ + +++||+||.++++++|+.|.+.|+++||+|+++++|+++++++
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 93 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNA---VT--G--VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIP 93 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHH
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEc---CC--C--CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Confidence 44568999 899999999 99999863 11 1 4899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceE
Q 006729 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (633)
Q Consensus 120 ~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 199 (633)
+|||+++|++++|+++.++.+++.+++++++++++|++......+...... .+....++.++..... ...
T Consensus 94 ~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~ 163 (548)
T 2d1s_A 94 VIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVILDSKVDY---------RGY 163 (548)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEETTCSSCB---------TTB
T ss_pred HHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEeCCcccc---------ccc
Confidence 999999999999999999999999999999999999998876654432211 1223455554432100 012
Q ss_pred eeHHHHHhcccCCCCCCCCC------CCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEE
Q 006729 200 YSWDEFLQLGENKQFDLPVK------KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (633)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 273 (633)
..|+++.........+.... .++++++++|||||||.||+|.+||+++.+.+......+. ..++.++|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~ 241 (548)
T 2d1s_A 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLT 241 (548)
T ss_dssp CBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEE
T ss_pred ccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEE
Confidence 34566654432110111111 2389999999999999999999999999988877665410 016788999999
Q ss_pred eCchHHHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHH
Q 006729 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (633)
Q Consensus 274 ~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (633)
.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..+++..
T Consensus 242 ~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------- 301 (548)
T 2d1s_A 242 VVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE------------------- 301 (548)
T ss_dssp CSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS-------------------
T ss_pred eccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc-------------------
Confidence 999999999876 44556 9999998865 9999999999999999999999999886521
Q ss_pred HhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccC
Q 006729 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSL 430 (633)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~ 430 (633)
..+ ..+++++|.+++||+++++++.+++.+.+ ++.+++.||+||++.+++...
T Consensus 302 ------------------~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 355 (548)
T 2d1s_A 302 ------------------LLN--------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP 355 (548)
T ss_dssp ------------------CGG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC
T ss_pred ------------------ccc--------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC
Confidence 011 11236899999999999999999999998 688999999999988776644
Q ss_pred CCCCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCC
Q 006729 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDG 509 (633)
Q Consensus 431 ~~~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG 509 (633)
.. ....+++|+|+++++++|+| ++ ...++++|+.|||+|+|+.++.|||++|+.+.+.| .+|||+|||+|++|+||
T Consensus 356 ~~-~~~~~~~G~~~~~~~~~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG 432 (548)
T 2d1s_A 356 EG-DDKPGASGKVVPLFKAKVID-LD-TKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEK 432 (548)
T ss_dssp TT-CCCTTCCBEECTTCEEEEEC-TT-TCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTC
T ss_pred cc-cCCCCCCCccCCCceEEEEe-CC-cCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCC
Confidence 33 23458999999999999998 43 33567789999999999999999999999999999 79999999999999999
Q ss_pred cEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHH
Q 006729 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCF 589 (633)
Q Consensus 510 ~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 589 (633)
+++++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+ ..++ ...+.++|+++
T Consensus 433 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv-------~~~~-~~~~~~~l~~~ 503 (548)
T 2d1s_A 433 HFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVV-------LESG-KNMTEKEVMDY 503 (548)
T ss_dssp CEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE-------ECTT-CCCCHHHHHHH
T ss_pred eEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEE-------EcCC-CCCCHHHHHHH
Confidence 99999999999997 899999999999999999999999999999877776666443 1222 23456789999
Q ss_pred HHHHH--Hhhhh--hhhheeccCCCCCCCceeeecCceee
Q 006729 590 LLSLL--HILPT--VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 590 l~~~l--~~~p~--~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
|++++ |++|. ++++++ +|+|+.+|.+|++|.
T Consensus 504 ~~~~l~~~~~p~~~i~~v~~-----lP~t~~GKi~r~~L~ 538 (548)
T 2d1s_A 504 VASQVSNAKRLRGGVRFVDE-----VPKGLTGKIDGRAIR 538 (548)
T ss_dssp HHTTSCGGGSCTTCEEECSS-----CCBCTTSCBCHHHHH
T ss_pred HHHhccccccccccEEEccC-----CCCCCcchhHHHHHH
Confidence 99988 88888 546654 555666778877664
No 11
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-70 Score=603.68 Aligned_cols=488 Identities=20% Similarity=0.264 Sum_probs=328.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 006729 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (633)
Q Consensus 42 ~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~l 121 (633)
.+.|+.++|+++++++||++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999974 3 489999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEee
Q 006729 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (633)
Q Consensus 122 A~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (633)
||+++|++++|+++.++.+++.+++++++++++|++.+....+...... ...++.++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS-LGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGG-CSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcc-cCCceEEEEcCCCCc--------------C
Confidence 9999999999999999999999999999999999999877664444322 255666666554211 1
Q ss_pred HHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHH
Q 006729 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (633)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~ 281 (633)
+.++.......+.......++++++++|||||||.||+|.+||+++.+.+......+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 122222122223334566789999999999999999999999999999999988877 899999999999999999
Q ss_pred HHHHHHHHHH-cCcEEEEEcCCHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhhhc
Q 006729 282 DRAIEEVFIS-NGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (633)
Q Consensus 282 g~~~~~~~l~-~G~~~~~~~~~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (633)
++...+.++. .|+++++..+++..+++.++++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 9988776544 455544444599999999999999999999999999876420
Q ss_pred CCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccCCCCCcccCC
Q 006729 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (633)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s 439 (633)
...++++|.++++|++ ++.+.+.+.+ ++.+++.||+||++++++....... ..+
T Consensus 268 --------------------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 --------------------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp --------------------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred --------------------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0112589999999987 8888888888 8999999999999987766544322 246
Q ss_pred CCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCCCcEEEeeec--
Q 006729 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRK-- 517 (633)
Q Consensus 440 ~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~i~GR~-- 517 (633)
+|+|+++++++|+| +++ .++++|+.|||+|+|+.++.||+++|+.+.+.|.+|||+|||+|++|+||+++++||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AED--RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCC--CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 554 5777889999999999999999999999999999999999999999999999999999
Q ss_pred cceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHH--H
Q 006729 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLL--H 595 (633)
Q Consensus 518 ~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~ 595 (633)
+|+||+ +|++|+|.+||++|.+||+|.+|+|++.+++..++.++++.+. .+ ....+.++|+++|++++ |
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~-------~~-~~~~~~~~l~~~l~~~L~~~ 470 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVC-------KP-GESIAADALAEFVASLIARY 470 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEe-------CC-CCCCCHHHHHHHHHhhCccc
Confidence 999996 8999999999999999999999999999999888777765542 22 23345578999999988 9
Q ss_pred hhhh-hhhheeccCCCCCCCceeeecCceeeEE
Q 006729 596 ILPT-VLFLCILPVSPLPTDGVFISKKKKLCCV 627 (633)
Q Consensus 596 ~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~~ 627 (633)
++|. +++++ .+|+|+.+|..|+.|..-
T Consensus 471 ~~P~~i~~v~-----~lP~t~~GKidr~~Lr~~ 498 (509)
T 3ivr_A 471 KKPKHVVFVE-----ALPKDAKGAIDRAAVKTA 498 (509)
T ss_dssp ---------------------------------
T ss_pred CCCcEEEEec-----CCCCCCCCCccHHHHHHH
Confidence 9999 55664 566667777888887653
No 12
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.9e-71 Score=615.19 Aligned_cols=478 Identities=17% Similarity=0.171 Sum_probs=316.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006729 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (633)
Q Consensus 40 ~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~ 119 (633)
.+...++.++|+++++++|+++|+++. + +++||+||.++++++|+.|.+.|+++||+|+|+++|+++++++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 141 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA 141 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 356789999999999999999999975 3 3899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceE
Q 006729 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (633)
Q Consensus 120 ~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 199 (633)
+|||+++|++++|+++.++.+++.++++++++++++++......+ .....++..+..
T Consensus 142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~--------------- 198 (570)
T 4gr5_A 142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA--------------- 198 (570)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC-----------------
T ss_pred HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc---------------
Confidence 999999999999999999999999999999999999997643321 111122211110
Q ss_pred eeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHH
Q 006729 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (633)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~ 279 (633)
..............++++++|+|||||||.||+|++||+++.+.+.. ...+ ++.++|++++++|++|
T Consensus 199 -------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTS
T ss_pred -------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccH
Confidence 00001112223456899999999999999999999999999766544 2222 6889999999999998
Q ss_pred HHHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHh
Q 006729 280 IFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (633)
Q Consensus 280 ~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (633)
..+...++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+++....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------- 323 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---------------------- 323 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh----------------------
Confidence 7777677888999999999753 899999999999999999999999998753211
Q ss_pred hhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccCCCCC-
Q 006729 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM- 434 (633)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~- 434 (633)
.+++||.+++||++++.++.+++.+.+ ++.+++.||+||++++++.......
T Consensus 324 --------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 377 (570)
T 4gr5_A 324 --------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD 377 (570)
T ss_dssp --------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred --------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence 116899999999999999988888877 8999999999999887665433221
Q ss_pred --cccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cC--------CeeecCceE
Q 006729 435 --SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD--------GWFHTGDIG 503 (633)
Q Consensus 435 --~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~--------g~~~TGD~~ 503 (633)
....++|+|+++++++|+| +++ .++++|+.|||+|+|+.++.|||++|+.+.+.| .+ |||+|||+|
T Consensus 378 ~~~~~~~iG~p~~~~~v~i~d-~~~--~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 378 LSGTALPIGVPLAGKRAYVLD-DDL--KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp TTSSSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cCCCccccceeeCCCEEEEEC-CCC--CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 2235799999999999998 554 567788999999999999999999999999988 32 699999999
Q ss_pred EECCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCc
Q 006729 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFD 583 (633)
Q Consensus 504 ~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (633)
++|+||+++|+||+||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..+..++++.+ ..++....+.
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv-------~~~~~~~~~~ 526 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVV-------AERADAPPDA 526 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEE-------ecCCCCCcCH
Confidence 99999999999999999997 899999999999999999999999999999887777776554 2233334556
Q ss_pred hhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceeeE
Q 006729 584 VEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLCC 626 (633)
Q Consensus 584 ~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~ 626 (633)
++|+++|++++ |++|. +++++ .+|+|+++|.+|++|..
T Consensus 527 ~~l~~~l~~~l~~~~~P~~i~~v~-----~lP~t~~GKi~R~~L~~ 567 (570)
T 4gr5_A 527 AELRRHVAEALPAYMVPVECVPVD-----ELPRTPNGKLDRRALTG 567 (570)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHhhCccccCCcEEEEcc-----cCCCCCCcCcchHhhhc
Confidence 78999999988 99999 55554 45666777888888753
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=9.4e-70 Score=603.17 Aligned_cols=499 Identities=16% Similarity=0.170 Sum_probs=406.8
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCch
Q 006729 41 PGMESCWDVFRMAVER-----NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCP 114 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~-----~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~-gi~~gd~Val~~~n~~ 114 (633)
..++++.++|++++++ +|+++|+++. ++ .+..+++||+||.++++++|+.|.+. |+++||+|+|+++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3455678999999999 9999999975 32 22346899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhh
Q 006729 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (633)
Q Consensus 115 ~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 194 (633)
++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+...... .+.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE-CPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGG-CTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhc-CCceeEEEEecccCc--------
Confidence 99999999999999999999999999999999999999999998876665443222 244556666654211
Q ss_pred cCceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHH--HHHHHHHhhhhhccCCCCCcEEE
Q 006729 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT--FIAGVKCLLESVNEKLTSEDVYV 272 (633)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~--~~~~~~~~~~~~~~~~~~~d~~l 272 (633)
.....+.+++..... ........++++++|+|||||||.||+|.+||+ ++. ..... ..+ ++.++|+++
T Consensus 182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~ 251 (570)
T 3c5e_A 182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMW 251 (570)
T ss_dssp --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEE
Confidence 012356666544322 122234567999999999999999999999999 444 33333 444 788999999
Q ss_pred EeCchHHHHHHHH-HHHHHHcCcEEEEEc---CCHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHH
Q 006729 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (633)
Q Consensus 273 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (633)
+.+|++|.+++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..+++..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 315 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------- 315 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence 9999999999874 777899999999985 39999999999999999999999999886520
Q ss_pred HHHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccc
Q 006729 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (633)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~ 428 (633)
....+++++|.+++||+++++++.+.+.+.+|+++++.||+||++.++..
T Consensus 316 ------------------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 316 ------------------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp ------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred ------------------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 00112368999999999999999999999899999999999999876655
Q ss_pred cCCCCCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEe-----cCcccccccCChhhhhccccCCeeecCceE
Q 006729 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-----GSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503 (633)
Q Consensus 429 ~~~~~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~-----g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~ 503 (633)
.... ....+++|+|+++++++|+| +++ .++++|+.|||+|+ |+.++.||+++|+.+.+.|.+|||+|||+|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g--~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKG--NVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTS--CBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCC--CCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4332 23458999999999999999 554 56778899999999 999999999999999999999999999999
Q ss_pred EECCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCccc----
Q 006729 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLA---- 579 (633)
Q Consensus 504 ~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 579 (633)
++|+||+++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..+..++++.+. .++..
T Consensus 442 ~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~-------~~~~~~~~~ 513 (570)
T 3c5e_A 442 IKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVL-------ASQFLSHDP 513 (570)
T ss_dssp EECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-------CGGGTTSCH
T ss_pred EEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEE-------CCcccCcch
Confidence 99999999999999999997 7999999999999999999999999999988777766654431 22211
Q ss_pred CCCchhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 580 CPFDVEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 580 ~~~~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
....++|+++|++++ |++|. ++++++ +|+|+++|.+|++|.
T Consensus 514 ~~~~~~l~~~l~~~L~~~~~P~~i~~v~~-----lP~t~~GKi~R~~L~ 557 (570)
T 3c5e_A 514 EQLTKELQQHVKSVTAPYKYPRKIEFVLN-----LPKTVTGKIQRAKLR 557 (570)
T ss_dssp HHHHHHHHHHHHHHSCGGGSCSEEEEESC-----CCBCTTCCBCHHHHH
T ss_pred HHHHHHHHHHHHhhCccccCCcEEEEecc-----CCCCCCcCCcHHHHH
Confidence 112357899998888 99999 656655 556667778887764
No 14
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.1e-70 Score=600.03 Aligned_cols=486 Identities=22% Similarity=0.300 Sum_probs=394.8
Q ss_pred HHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 006729 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127 (633)
Q Consensus 48 ~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G 127 (633)
++|++.++++|+++|+..... ++ +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 578899999999999986411 22 389999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEeeHHHHHh
Q 006729 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ 207 (633)
Q Consensus 128 ~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (633)
++++|+++.++.+++.+++++++++++|++......+....... . ..+..++..... .+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~-------------~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV--G-ATVETLGPDGRG-------------SLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH--T-CEEEECCTTSCS-------------HHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc--C-ceEEEecCCccc-------------ccchhhh
Confidence 99999999999999999999999999999876543322221111 0 123333222110 1111111
Q ss_pred cccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHH-H
Q 006729 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-E 286 (633)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~-~ 286 (633)
.. ..........++++++++|||||||.||+|.+||+++.+........+ ++.++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112223355789999999999999999999999999999999988887 8999999999999999998765 6
Q ss_pred HHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhhhcCCCCc
Q 006729 287 EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (633)
Q Consensus 287 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (633)
+.++..|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 677889999988865 9999999998 89999999999998865210
Q ss_pred CcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCCCcccCCCCCccC
Q 006729 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445 (633)
Q Consensus 366 ~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~ 445 (633)
. ....++++|.+++||+++++++.+.+.+.++.++++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~--------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----L--------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----C--------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----c--------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 0 011226899999999999999999999999999999999999987654333 33334578999999
Q ss_pred CceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCCcEEEeeeccceeEeC
Q 006729 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524 (633)
Q Consensus 446 ~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~i~GR~~d~i~~~ 524 (633)
+++++|+| ++. ..++++|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||+++++||.||+||+
T Consensus 328 ~~~~~i~d-~~~-g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTD-PET-GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEEC-TTT-CCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEE-CCC-CCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 99999998 433 3677889999999999999999999999999999 5999999999999999999999999999997
Q ss_pred CCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHH--Hhhhh-hh
Q 006729 525 QGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLL--HILPT-VL 601 (633)
Q Consensus 525 ~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~p~-~~ 601 (633)
+|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+ ..+....+..+++++|++++ |++|. ++
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~--------~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~ 476 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVV--------RDKGATIDEAQVLHGLDGQLAKFKMPKKVI 476 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEE--------ECTTCCCCHHHHHHHHBTTBCGGGCCSEEE
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEE--------eCCCCCCCHHHHHHHHHhhcccCCCCCEEE
Confidence 799999999999999999999999999999887777666443 12233455678999999988 99999 66
Q ss_pred hheeccCCCCCCCceeeecCceee
Q 006729 602 FLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 602 ~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
++++ +|+|+++|.+|++|.
T Consensus 477 ~v~~-----lP~t~~GKi~R~~L~ 495 (503)
T 4fuq_A 477 FVDD-----LPRNTMGKVQKNVLR 495 (503)
T ss_dssp EESC-----CCBCTTSCBCHHHHH
T ss_pred EECC-----CCCCcccceeHHHHH
Confidence 6655 555666678887764
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=9.5e-70 Score=612.23 Aligned_cols=510 Identities=14% Similarity=0.209 Sum_probs=409.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006729 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (633)
Q Consensus 44 ~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~ 123 (633)
+++.++|+++++++|+++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~ 152 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 45889999999999999999986 333445578999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChh---------hHhhcCCCcc-cCccEEEEecCCChhhHHHHh
Q 006729 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTT-EHLKTIVSFSKVKPEQREEIE 193 (633)
Q Consensus 124 ~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~ 193 (633)
+++|++++|+++.++.+++.+++++++++++|+++.... .+.+...... ..++.++.++.......
T Consensus 153 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---- 228 (652)
T 1pg4_A 153 ARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID---- 228 (652)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC----
T ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc----
Confidence 999999999999999999999999999999999876421 1111111110 24556776653211000
Q ss_pred hcCceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHH-HHHHhhhhhccCCCCCcEEE
Q 006729 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA-GVKCLLESVNEKLTSEDVYV 272 (633)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~-~~~~~~~~~~~~~~~~d~~l 272 (633)
.......+|++++..... ........++++++|+|||||||.||||++||++++.... .....+ ++.++|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l 302 (652)
T 1pg4_A 229 WQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 302 (652)
T ss_dssp CCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred ccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 000123567777654322 2233345679999999999999999999999999887664 344455 788999999
Q ss_pred EeCchHHHHHHH-HHHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHH
Q 006729 273 SYLPLAHIFDRA-IEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (633)
Q Consensus 273 ~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (633)
+.+|++|..|+. .++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+++...+.
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------- 371 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA----------- 371 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG-----------
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc-----------
Confidence 999999999985 47788999999999863 7899999999999999999999999886531110
Q ss_pred HHHHHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcC---CeEEEeeccccCC
Q 006729 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETC 423 (633)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~yG~tE~~ 423 (633)
....++++||.+++||+++++++.+++.+.+| +++++.||+||++
T Consensus 372 --------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 419 (652)
T 1pg4_A 372 --------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419 (652)
T ss_dssp --------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred --------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccc
Confidence 11123479999999999999999999999888 8999999999999
Q ss_pred CcccccCCCC-CcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEec--CcccccccCChhhhhccc---cCCee
Q 006729 424 AGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWF 497 (633)
Q Consensus 424 ~~~~~~~~~~-~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g--~~~~~gY~~~~~~~~~~~---~~g~~ 497 (633)
++++...+.. ....+++|+|++|++++|+| +++ .++++|+.|||+|+| |.++.|||++++.+.+.| .+|||
T Consensus 420 ~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g--~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y 496 (652)
T 1pg4_A 420 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEG--HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496 (652)
T ss_dssp SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTC--CBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred cceecCCCCCcCccCCccccCcCCCeEEEEC-CCC--CCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence 8776654332 33468999999999999999 554 466678999999999 789999999999887776 37899
Q ss_pred ecCceEEECCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCc
Q 006729 498 HTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPK 577 (633)
Q Consensus 498 ~TGD~~~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (633)
+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+ +.++
T Consensus 497 ~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv-------~~~~ 568 (652)
T 1pg4_A 497 FSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT-------LNHG 568 (652)
T ss_dssp EEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEE-------ECTT
T ss_pred ECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEE-------ECCC
Confidence 99999999999999999999999998 799999999999999999999999999998877777666544 2222
Q ss_pred ccCC--CchhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 578 LACP--FDVEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 578 ~~~~--~~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
.... ...+|+++|++++ |++|. ++++++ +|+|+++|..|+.|.
T Consensus 569 ~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~-----lP~T~sGKi~R~~L~ 616 (652)
T 1pg4_A 569 EEPSPELYAEVRNWVRKEIGPLATPDVLHWTDS-----LPKTRSGKIMRRILR 616 (652)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSC-----CCBCTTSCBCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCC-----CCCCCCccchHHHHH
Confidence 2111 1357999999988 89999 556654 556667777777664
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=4.2e-69 Score=597.03 Aligned_cols=476 Identities=19% Similarity=0.238 Sum_probs=388.5
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 006729 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (633)
Q Consensus 39 ~~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~ 118 (633)
+.+...++.++|+++++++|+++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++
T Consensus 34 ~~~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~ 104 (563)
T 1amu_A 34 EYPRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFI 104 (563)
T ss_dssp CCCTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3355689999999999999999999874 3 489999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCce
Q 006729 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (633)
Q Consensus 119 ~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 198 (633)
++|||+++|++++|+++.++.+++.+++++++++++|++.+....+..... ...+..++...
T Consensus 105 ~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~------------- 166 (563)
T 1amu_A 105 GILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT------------- 166 (563)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST-------------
T ss_pred HHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh-------------
Confidence 999999999999999999999999999999999999998765443322211 11222222110
Q ss_pred EeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchH
Q 006729 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (633)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (633)
+... ..........++++++++|||||||.||||++||+++.+........+ ++.++|++++++|++
T Consensus 167 ------~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (563)
T 1amu_A 167 ------IKIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASIS 233 (563)
T ss_dssp ------TTTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTT
T ss_pred ------hccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcc
Confidence 0000 011112344678999999999999999999999999998888877766 789999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhH
Q 006729 279 HIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (633)
Q Consensus 279 ~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (633)
|..++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 234 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------- 290 (563)
T 1amu_A 234 FDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE----------------------- 290 (563)
T ss_dssp STHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-----------------------
T ss_pred HHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-----------------------
Confidence 99998878888999999998753 889999999999999999999998765220
Q ss_pred HhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCC-
Q 006729 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE- 433 (633)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~- 433 (633)
.++++|.+++||+++++++.+.+.+ .+.+++.||+||++.+++......
T Consensus 291 ----------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~ 340 (563)
T 1amu_A 291 ----------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKE 340 (563)
T ss_dssp ----------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSS
T ss_pred ----------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccc
Confidence 1258999999999999999999986 479999999999987766543222
Q ss_pred -CcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhcccc-------CCeeecCceEEE
Q 006729 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGDIGEW 505 (633)
Q Consensus 434 -~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~-------~g~~~TGD~~~~ 505 (633)
.....++|+|+++++++|+| +++ .++++|+.|||+|+|+.++.|||++|+.+.+.|. +|||+|||+|++
T Consensus 341 ~~~~~~~vG~p~~~~~v~i~d-~~~--~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~ 417 (563)
T 1amu_A 341 TIGHSVPIGAPIQNTQIYIVD-ENL--QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW 417 (563)
T ss_dssp CCCSSCCCBEECTTEEEEEEC-TTS--CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEE
T ss_pred cCCCCCcccceeCCCEEEEEC-CCc--CCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEE
Confidence 12346899999999999999 554 4667789999999999999999999999999883 359999999999
Q ss_pred CCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchh
Q 006729 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVE 585 (633)
Q Consensus 506 ~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (633)
|+||+++|+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..+..++++.+ ++ ...+.++
T Consensus 418 d~dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv---------~~-~~~~~~~ 486 (563)
T 1amu_A 418 LSDGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV---------SE-KHIPLEQ 486 (563)
T ss_dssp CTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEE---------ES-SCCCHHH
T ss_pred cCCCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEE---------eC-CCCCHHH
Confidence 999999999999999997 899999999999999999999999999988766666555433 11 2345678
Q ss_pred HHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceeeE
Q 006729 586 VCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLCC 626 (633)
Q Consensus 586 l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~ 626 (633)
|+++|++++ |++|. ++++++ +|+|+++|.+|++|..
T Consensus 487 l~~~l~~~L~~y~~P~~i~~v~~-----lP~t~~GKi~r~~L~~ 525 (563)
T 1amu_A 487 LRQFSSEELPTYMIPSYFIQLDK-----MPLTSNGKIDRKQLPE 525 (563)
T ss_dssp HHHHHHHHSCGGGSCSEEEECSS-----CCBCTTSSBCGGGSCC
T ss_pred HHHHHHhhCchhhCCcEEEEecc-----cCCCCCcChhHHhcCC
Confidence 999999988 99999 656655 5555666777777753
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.6e-69 Score=592.22 Aligned_cols=478 Identities=19% Similarity=0.189 Sum_probs=388.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006729 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (633)
Q Consensus 44 ~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~ 123 (633)
+|+.++|+++++++|+++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 57999999999999999999975 3 38999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 006729 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (633)
Q Consensus 124 ~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 203 (633)
+++|++++|+++.++.+++.++++++++++++++....... ... .++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999985432110 000 111110 011
Q ss_pred HHHhc-ccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHH
Q 006729 204 EFLQL-GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (633)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g 282 (633)
++... ....+.......++++++++|||||||.||+|.+||+++.+.+......+ ++.++|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 12111 11122223345689999999999999999999999999999998888877 8899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhh
Q 006729 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (633)
Q Consensus 283 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
+..++.++..|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999864 89999999999999999999999988754210
Q ss_pred hcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccCCCCC---
Q 006729 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM--- 434 (633)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~--- 434 (633)
. ...+++++|.+++||+++++++.+++.+.+ ++++++.||+||++.+++.......
T Consensus 255 ------------~--------~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------F--------SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------C--------STTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------c--------cchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 0 111236899999999999999999999988 8999999999999887765433221
Q ss_pred -cccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhcccc----CCeeecCceEEECCCC
Q 006729 435 -SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTGDIGEWQPDG 509 (633)
Q Consensus 435 -~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~----~g~~~TGD~~~~~~dG 509 (633)
....++|+|+++++++|+| +++ .++++|+.|||+|+|+.++.|||++|+.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDG--TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSS--CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCC--CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 1246799999999999998 544 5667889999999999999999999999999883 569999999999 799
Q ss_pred cEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCC---CchhH
Q 006729 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACP---FDVEV 586 (633)
Q Consensus 510 ~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l 586 (633)
+++|+||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++...+..++++.+ ..++.... ...+|
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv-------~~~~~~~~~~~~~~~l 462 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVV-------PGEHSFEKEFKLTSAI 462 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEE-------ECSCCCSSHHHHHHHH
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEe-------cCCccccchhhhHHHH
Confidence 99999999999998 899999999999999999999999999988877777666443 11111111 12468
Q ss_pred HHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCcee
Q 006729 587 CCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKL 624 (633)
Q Consensus 587 ~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~ 624 (633)
+++|++++ |++|. +++++ .+|+|+++|.+|++|
T Consensus 463 ~~~l~~~L~~~~~P~~~~~~~-----~lP~t~~GKi~R~~L 498 (512)
T 3fce_A 463 KKELNERLPNYMIPRKFMYQS-----SIPMTPNGKVDRKKL 498 (512)
T ss_dssp HHHHHTTSCGGGSCSEEEECS-----CCCBCTTSSBCHHHH
T ss_pred HHHHHhhCchhcCCeEEEEec-----ccCCCCCcChHHHHH
Confidence 88888877 99999 55555 455666677877766
No 18
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.3e-69 Score=591.26 Aligned_cols=478 Identities=18% Similarity=0.210 Sum_probs=394.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 006729 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (633)
Q Consensus 44 ~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~-gi~~gd~Val~~~n~~~~~~~~lA 122 (633)
+|+.++|+++++++|+++|+++. + +++||+||.++++++|+.|.+. |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 57999999999999999999874 3 4899999999999999999874 889999999999999999999999
Q ss_pred HHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEeeH
Q 006729 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (633)
Q Consensus 123 ~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (633)
|+++|++++|+++.++.+++.+++++++++++|++....... .. . ....+++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~----------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---Q----------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---C----------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---c----------------------ccceecH
Confidence 999999999999999999999999999999999976532111 00 0 1123345
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHH
Q 006729 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (633)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g 282 (633)
.++...............++++++|+|||||||.||+|.+||+++.+.+......+ ++..++++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554433333333345678999999999999999999999999999999888777 8899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhh
Q 006729 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (633)
Q Consensus 283 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
+..++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++...
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999999754 89999999999999999999999988764210
Q ss_pred hcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccCCCC----
Q 006729 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (633)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~---- 433 (633)
. ....++++|.+++||++++.++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 254 ------------~--------~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------F--------SQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------C--------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------c--------ccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 0 011226899999999999999999999998 899999999999988766543221
Q ss_pred CcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc--cCC--eeecCceEEECCCC
Q 006729 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTGDIGEWQPDG 509 (633)
Q Consensus 434 ~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~--~~g--~~~TGD~~~~~~dG 509 (633)
.....++|+|+++++++|+| +++ .++++|+.|||+|+|+.++.|||++|+.+.+.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEG--QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTS--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCC--CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12235799999999999999 553 577788999999999999999999999999998 344 7999999999 599
Q ss_pred cEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCC---chhH
Q 006729 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPF---DVEV 586 (633)
Q Consensus 510 ~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l 586 (633)
+++++||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++..+..++++.+ ..++..... .++|
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv-------~~~~~~~~~~~~~~~l 461 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIV-------PEEHEFEKEFQLTSAI 461 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEE-------ECCCCCSSHHHHHHHH
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEE-------eccccccchhhHHHHH
Confidence 99999999999998 899999999999999999999999999988766555554333 122211111 2578
Q ss_pred HHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 587 CCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 587 ~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
+++|++++ |++|. ++++++ +|+|+++|.+|++|.
T Consensus 462 ~~~l~~~L~~~~~P~~~~~v~~-----lP~t~~GKi~R~~L~ 498 (511)
T 3e7w_A 462 KKELAASLPAYMIPRKFIYQDH-----IQMTANGKIDRKRIG 498 (511)
T ss_dssp HHHHHHHSCGGGSCSEEEECSC-----CCBCTTSCBCHHHHH
T ss_pred HHHHHhhCchhhCCeeEEEecc-----CCCCCCcCccHHHHH
Confidence 89998887 99999 555544 556667778888764
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.1e-69 Score=595.12 Aligned_cols=497 Identities=18% Similarity=0.238 Sum_probs=387.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006729 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~ 120 (633)
..++++.++|+++++ +|+++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 345569999999999 9999999864 3 37999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCc-cEEEEecCCChhhHHHHhhcCceE
Q 006729 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGLAV 199 (633)
Q Consensus 121 lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~ 199 (633)
|||+++|++++|+++.++.+++.+++++++++++|++.+....+....... ..+ ..++.++..... +...
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999987655443322111 222 344444332110 0011
Q ss_pred eeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHH-HHHHHHHHHhhhhhccCCCCCcEEEEeCchH
Q 006729 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (633)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (633)
..++++...... ........++++++++|||||||.||+|.+||+++ ..........+ ++.++|++++.+|++
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred cchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence 245666543221 22233457799999999999999999999999999 55554444444 788999999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEEc--CCHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHH
Q 006729 279 HIFDRAI-EEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (633)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (633)
|.+++.. ++.++..|+++++.+ +++..+++.++++++|+++++|+++..+++...
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 293 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN---------------------- 293 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT----------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc----------------------
Confidence 9999876 556899999999873 389999999999999999999999988754210
Q ss_pred hhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCCCc
Q 006729 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (633)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~ 435 (633)
.... .+ .++|.+++||++++.++.+++.+.+|+++++.||+||++.++....... .
T Consensus 294 ---------------~~~~-------~~-~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 294 ---------------LPAR-------AD-VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp ---------------CCCG-------GG-CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred ---------------cccc-------cC-CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 0000 01 3799999999999999999999999999999999999977666554443 3
Q ss_pred ccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCCCcEEEee
Q 006729 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (633)
Q Consensus 436 ~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~i~G 515 (633)
..+++|+|+++++++|+| +++ .++++|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++++||+++++|
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~G 426 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAG--HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAG 426 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTS--CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred ccCCcccCCCCCEEEEEC-CCC--CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeC
Confidence 347899999999999999 554 56778899999999999999999999999999999999999999999999999999
Q ss_pred eccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCC--CchhHHHHHHHH
Q 006729 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACP--FDVEVCCFLLSL 593 (633)
Q Consensus 516 R~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~ 593 (633)
|.||+|++ +|++|+|.+||++|.+||+|.+|+|++. ++..+..++++.+ ..++.... ..++|+++|+++
T Consensus 427 R~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv-------~~~~~~~~~~~~~~l~~~l~~~ 497 (529)
T 2v7b_A 427 RSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVV-------LKREFAPSEILAEELKAFVKDR 497 (529)
T ss_dssp EGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEE-------ECTTCCCCHHHHHHHHHHHHTT
T ss_pred ccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEE-------ecCCCCcchhHHHHHHHHHHhh
Confidence 99999997 8999999999999999999999999999 5544444444332 12221111 235799999988
Q ss_pred H--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 594 L--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 594 l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
+ |++|. ++++++ +|+|+++|.+|++|.
T Consensus 498 L~~~~~P~~i~~v~~-----lP~t~~GKi~r~~L~ 527 (529)
T 2v7b_A 498 LAPHKYPRDIVFVDD-----LPKTATGKIQRFKLR 527 (529)
T ss_dssp SCTTTSCSEEEEESC-----CCBCTTSCBCHHHHH
T ss_pred cchhhCCeEEEEecc-----CCCCCccchhHHhHh
Confidence 8 89999 666655 456666778887763
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.7e-68 Score=595.71 Aligned_cols=466 Identities=18% Similarity=0.158 Sum_probs=381.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006729 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~ 120 (633)
....++.++|+++++++||++|+++. ++ ++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~~------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---FG------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---TE------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---CC------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999975 43 8999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEe
Q 006729 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (633)
Q Consensus 121 lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (633)
|||+++|++++|+++.++.+++.++++++++++++++....... .....+. .
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~~-~------------------- 146 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCVP-V------------------- 146 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEEE-G-------------------
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCceee-e-------------------
Confidence 99999999999999999999999999999999999765432211 1111110 0
Q ss_pred eHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHH
Q 006729 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (633)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~ 280 (633)
... .............++++++++|||||||.||||+++|+++.+.+.. ...+ ++.+++++++.+|++|.
T Consensus 147 --~~~--~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~ 216 (620)
T 4dg8_A 147 --RHL--PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFD 216 (620)
T ss_dssp --GGC--CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTST
T ss_pred --ccC--CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHH
Confidence 000 0001112223446899999999999999999999999999877655 3334 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhh
Q 006729 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (633)
Q Consensus 281 ~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (633)
.++..++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++...
T Consensus 217 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------ 272 (620)
T 4dg8_A 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------ 272 (620)
T ss_dssp HHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------
T ss_pred HHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------
Confidence 999888899999999999742 89999999999999999999999998865210
Q ss_pred hhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccCCCC---
Q 006729 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE--- 433 (633)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~--- 433 (633)
..+++||.+++||++++.++.+.+.+.+ ++++++.||+||++.+++......
T Consensus 273 ------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 328 (620)
T 4dg8_A 273 ------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328 (620)
T ss_dssp ------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGG
T ss_pred ------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccccc
Confidence 0116899999999999988888777665 899999999999988766443222
Q ss_pred CcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccC--------CeeecCceEEE
Q 006729 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD--------GWFHTGDIGEW 505 (633)
Q Consensus 434 ~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~--------g~~~TGD~~~~ 505 (633)
.....++|+|+++++++|+| +++. ..+++|+.|||+|+|+.++.||+++|+.+.+.|.+ +||+|||+|++
T Consensus 329 ~~~~~~iG~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 329 EEDDIPIGKAIAGTAVLLLD-EHGQ-EIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GSSSCCCBEECTTEEEEEEC-TTSC-BCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCCCceecccCcEEEEEC-ccCC-CCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 12346899999999999999 5443 33567899999999999999999999999999943 79999999999
Q ss_pred CCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchh
Q 006729 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVE 585 (633)
Q Consensus 506 ~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (633)
++||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++.....++++.. ...+
T Consensus 407 ~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~---------------~~~~ 470 (620)
T 4dg8_A 407 DEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTG---------------KADA 470 (620)
T ss_dssp CTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEE---------------CTTC
T ss_pred CCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEec---------------ChHH
Confidence 999999999999999998 799999999999999999999999999988877776655321 1234
Q ss_pred HHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCcee
Q 006729 586 VCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKL 624 (633)
Q Consensus 586 l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~ 624 (633)
++++|+++| |++|. ++++ ..+|+|+++|..|+.|
T Consensus 471 ~~~~l~~~Lp~y~~P~~~~~v-----~~lP~t~~GKidR~~L 507 (620)
T 4dg8_A 471 SPQALLRQLPTWQRPHACVRV-----EALPLTAHGKLDRAAL 507 (620)
T ss_dssp CCHHHHHHSCGGGSCSEEEEC-----SSCCCC----CCHHHH
T ss_pred HHHHHHHhChhhcCCcEEEEE-----CcCCCCcccCHhHHHH
Confidence 556777777 99999 5455 5566677777888776
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.3e-69 Score=590.16 Aligned_cols=486 Identities=20% Similarity=0.238 Sum_probs=377.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 006729 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (633)
Q Consensus 44 ~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~ 123 (633)
+||.++|+++++++|+++|+++. +. ++||+||.++++++|+.|.+. +||+|+++++|++++++++|||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~~------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---QE------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---SC------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---Cc------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999975 33 899999999999999999986 8999999999999999999999
Q ss_pred HhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceE-eeH
Q 006729 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV-YSW 202 (633)
Q Consensus 124 ~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~ 202 (633)
+++|++++|+++.++.+++.+++++++++++|++............ ...+..+......... .. ....... ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGL-LD--NTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeecccccc-cc--cccccccccch
Confidence 9999999999999999999999999999999999775443221110 0111111110000000 00 0000000 000
Q ss_pred HHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHH
Q 006729 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (633)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g 282 (633)
..................++++++++|||||||.||+|.+||+++.+........+ ++.++|++++.+|++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 11111111111122345789999999999999999999999999999999888877 8899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhhhcC
Q 006729 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (633)
Q Consensus 283 ~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (633)
+..++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++....
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 271 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------- 271 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence 9888889999999999876 999999999999999999999999988663110
Q ss_pred CCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCC-CcccCCC
Q 006729 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTV 440 (633)
Q Consensus 362 ~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~-~~~~~s~ 440 (633)
...++|.+++||+++++++.+.+.+ +++++++.||+||+++.+....... .....++
T Consensus 272 ---------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 272 ---------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp ---------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred ---------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 0027999999999999999999987 5999999999999987655443322 2235789
Q ss_pred CCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCCCcEEEeeeccce
Q 006729 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNI 520 (633)
Q Consensus 441 G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~i~GR~~d~ 520 (633)
|+|+++++++|+| ++ +++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||+++++||.+|+
T Consensus 330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDL 400 (501)
T ss_dssp BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccce
Confidence 9999999999998 43 456899999999999999999999887 88999999999999999999999999999
Q ss_pred eEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHH--Hhhh
Q 006729 521 FKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLL--HILP 598 (633)
Q Consensus 521 i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~p 598 (633)
|++ +|++|+|.+||++|.+||+|.+|+|++.+++..++.++++.+ + ....+.++|+++|++++ |++|
T Consensus 401 ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~---------~-~~~~~~~~l~~~l~~~L~~~~~P 469 (501)
T 3ipl_A 401 IIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFV---------S-ESDISKAQLIAYLSKHLAKYKVP 469 (501)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE---------E-SSCCCHHHHHHHHHHHSCGGGSC
T ss_pred EEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEE---------e-CCCCCHHHHHHHHHhhCccccCC
Confidence 996 899999999999999999999999999999987777666433 1 22345679999999988 9999
Q ss_pred h-hhhheeccCCCCCCCceeeecCceee
Q 006729 599 T-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 599 ~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
. ++++ ..+|+|+++|..|++|.
T Consensus 470 ~~i~~v-----~~lP~t~~GKi~R~~l~ 492 (501)
T 3ipl_A 470 KHFEKV-----DTLPYTSTGKLQRNKLY 492 (501)
T ss_dssp SEEEEC-----SSCC-------------
T ss_pred CEEEEe-----cccCCCCCCCEeHHHHh
Confidence 9 5555 45666777788888875
No 22
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.9e-69 Score=607.60 Aligned_cols=510 Identities=16% Similarity=0.212 Sum_probs=403.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHHH
Q 006729 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEA 122 (633)
Q Consensus 44 ~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~-~~gi~~gd~Val~~~n~~~~~~~~lA 122 (633)
+++.++|+++++++|+++|+++. +...+..+++||+||.+++.++|+.|+ +.|+++||+|+|+++|++++++++||
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA 158 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA 158 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 56889999999999999999986 333444578999999999999999999 99999999999999999999999999
Q ss_pred HHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChh---------hHhhcCCCcccCccEEEEecCCChhhHHHHh
Q 006729 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (633)
Q Consensus 123 ~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 193 (633)
|+++|++++|+++.++.+++.+++++++++++|+++.... .+.+... ..+.++.++.++....... .
T Consensus 159 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~---~ 234 (663)
T 1ry2_A 159 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR-ETPGVRHVLVYRKTNNPSV---A 234 (663)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT-SCTTCCEEEEECSSCCSSC---C
T ss_pred HHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH-hCCCCceEEEEecCCCCcc---c
Confidence 9999999999999999999999999999999999876432 1222222 2245667777654311000 0
Q ss_pred hcCceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHH-HHHhhhhhccCCCCCcEEE
Q 006729 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYV 272 (633)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~~~~~~d~~l 272 (633)
.......+|.++..... .........++++++|+|||||||.||||++||++++..... ....+ ++.++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 308 (663)
T 1ry2_A 235 FHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF 308 (663)
T ss_dssp CCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred cCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 00112356777765432 122334556899999999999999999999999998876643 34445 788999999
Q ss_pred EeCchHHHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHH
Q 006729 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (633)
Q Consensus 273 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (633)
+..|++|..|+.. ++.+|..|+++++.+. ++..+++.|+++++|+++++|++++.+.+...+
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------ 376 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS------------ 376 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT------------
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc------------
Confidence 9999999999854 7788999999999863 789999999999999999999999887542100
Q ss_pred HHHHHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcC---CeEEEeeccccCC
Q 006729 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETC 423 (633)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~---~~l~~~yG~tE~~ 423 (633)
.....++++||.+++||+++++++.+++.+.+| +++++.||+||++
T Consensus 377 -------------------------------~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 425 (663)
T 1ry2_A 377 -------------------------------YIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 425 (663)
T ss_dssp -------------------------------SSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred -------------------------------ccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcccc
Confidence 001123479999999999999999999999887 8999999999998
Q ss_pred CcccccCC--CCCcccCCCCCccCCceEEEeecC-CCccccCCC-CCCCeEEEec--CcccccccCChhhhhccc---cC
Q 006729 424 AGTFVSLP--NEMSMIGTVGPPVPNVDVCLESVP-EMEYDALSS-TPRGEVCVKG--STVFSGYYKREDLTKEVM---VD 494 (633)
Q Consensus 424 ~~~~~~~~--~~~~~~~s~G~p~~~~~i~i~~~~-~~~~~~~~~-g~~Gei~v~g--~~~~~gY~~~~~~~~~~~---~~ 494 (633)
+.++.... .....++++|+|++|++++|+| + ++ .++++ |+.|||+|+| |.++.|||++++.+.+.| .+
T Consensus 426 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g--~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 426 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTG--EELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSST--TCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred CeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCC--CcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 77666543 2233468999999999999998 5 43 34445 7899999999 589999999999888877 37
Q ss_pred CeeecCceEEECCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCC
Q 006729 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCL 574 (633)
Q Consensus 495 g~~~TGD~~~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (633)
|||+|||+|++|+||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+.
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~------- 574 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL------- 574 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEE-------
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEE-------
Confidence 89999999999999999999999999997 7999999999999999999999999999887444433333221
Q ss_pred CCccc---C------CCchhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 575 SPKLA---C------PFDVEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 575 ~~~~~---~------~~~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
.++.. . ...++|+++|++++ |++|. ++++++ +|+|+++|.+|+.|.
T Consensus 575 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~-----lP~T~sGKi~R~~L~ 632 (663)
T 1ry2_A 575 KNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDD-----LPKTRSGKIMRRILR 632 (663)
T ss_dssp C------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSC-----CCBCTTSCBCHHHHH
T ss_pred cCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCC-----CCCCCccCchHHHHH
Confidence 22211 1 12468999999988 89999 556654 556666677776654
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.8e-68 Score=599.11 Aligned_cols=493 Identities=17% Similarity=0.217 Sum_probs=405.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006729 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~ 120 (633)
....++.++|+++++ ||++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~ 92 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITF 92 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHH
Confidence 446789999999987 999999975 3 48999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChh----hHhhcCCCcccCccEEEEecCCChhhHHHHhhcC
Q 006729 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (633)
Q Consensus 121 lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 196 (633)
|||+++|++++|+++.++.+++.++++++++++++++..... ............++.+.........
T Consensus 93 lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 163 (617)
T 3rg2_A 93 FALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEH--------- 163 (617)
T ss_dssp HHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTT---------
T ss_pred HHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccccc---------
Confidence 999999999999999999999999999999999999976541 1111111111344455554433221
Q ss_pred ceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCc
Q 006729 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (633)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 276 (633)
.+.+....... ........++++|+++|||||||.||+|+++|+++.+.+......+ ++.+++++++++|
T Consensus 164 ----~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p 233 (617)
T 3rg2_A 164 ----NLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIP 233 (617)
T ss_dssp ----BHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSC
T ss_pred ----chhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEecc
Confidence 22333332221 2233455678999999999999999999999999999999988887 8999999999999
Q ss_pred hHHHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHh
Q 006729 277 LAHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (633)
Q Consensus 277 l~~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (633)
++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++........
T Consensus 234 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------- 298 (617)
T 3rg2_A 234 AAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR--------------- 298 (617)
T ss_dssp TTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT---------------
T ss_pred chhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc---------------
Confidence 999999875 7778999999999865 8999999999999999999999999987754322110
Q ss_pred HHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCC
Q 006729 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (633)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~ 433 (633)
..++++|.+++||+++++++.+++.+.+++++++.||+||++..+.......
T Consensus 299 ----------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~ 350 (617)
T 3rg2_A 299 ----------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350 (617)
T ss_dssp ----------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCH
T ss_pred ----------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcc
Confidence 0126899999999999999999999999999999999999986555443333
Q ss_pred CcccCCCCCcc-CCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCCcE
Q 006729 434 MSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSL 511 (633)
Q Consensus 434 ~~~~~s~G~p~-~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l 511 (633)
.....++|+|+ ++++++|+| +++ .++++|+.|||+|+|+.++.||+++|+.+.+.| .+|||+|||+|++++||++
T Consensus 351 ~~~~~~~G~p~~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l 427 (617)
T 3rg2_A 351 EKIIHTQGYPMCPDDEVWVAD-AEG--NPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYI 427 (617)
T ss_dssp HHHHHCCCEESCTTCEEEEEC-TTS--CBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCE
T ss_pred cccccCCCccCCCCceEEEEC-CCC--CCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceE
Confidence 23346889997 788999998 544 577788999999999999999999999999999 7899999999999999999
Q ss_pred EEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHH
Q 006729 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLL 591 (633)
Q Consensus 512 ~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 591 (633)
+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..+..++++.+. .+ ..+..+++++++
T Consensus 428 ~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~-------~~---~~~~~~l~~~l~ 496 (617)
T 3rg2_A 428 TVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVV-------KE---PLRAVQVRRFLR 496 (617)
T ss_dssp EEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEE-------SS---CCCHHHHHHHHH
T ss_pred EEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEe-------CC---CCCHHHHHHHHH
Confidence 999999999997 7999999999999999999999999999888777666654331 11 345678999999
Q ss_pred H-HH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 592 S-LL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 592 ~-~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
+ .+ |++|. +++++ .+|+|+++|..|++|.
T Consensus 497 ~~~lp~~~vP~~~~~v~-----~lP~t~~GKidR~~L~ 529 (617)
T 3rg2_A 497 EQGIAEFKLPDRVECVD-----SLPLTAVGKVDKKQLR 529 (617)
T ss_dssp TTTCCGGGSCSEEEECS-----CCCBCTTSSBCHHHHH
T ss_pred hCCCccccCCcEEEEec-----ccCCCCCCCCcHHHHH
Confidence 8 46 99999 55554 5566667778887763
No 24
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.2e-69 Score=589.04 Aligned_cols=476 Identities=23% Similarity=0.304 Sum_probs=376.3
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 006729 41 PGMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~-~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~ 119 (633)
..|+|+.+.|+++++++|+ ++|+++. + +++||+||.++++++|..|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4578899999999999997 9999975 3 48999999999999998874 488999999999999999
Q ss_pred HHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceE
Q 006729 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (633)
Q Consensus 120 ~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 199 (633)
+|||+++|++++|+++.++.+++.+++++++++++|++.+.. .......+..+ .++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~-~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE------LPPALGALERV-DVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC------CCGGGTTSEEE-ECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc------cchhhcccccc-ccccc---------------
Confidence 999999999999999999999999999999999999986521 11111112111 11110
Q ss_pred eeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHH
Q 006729 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (633)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~ 279 (633)
...........++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0111222345678999999999999999999999999999999988888 8899999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhh
Q 006729 280 IFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (633)
Q Consensus 280 ~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (633)
..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++......
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~--------------------- 265 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP--------------------- 265 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH---------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc---------------------
Confidence 999875 7778999999998865 899999999 8899999999999999876432111
Q ss_pred hhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCCCccc
Q 006729 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (633)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~ 437 (633)
. ... .++++|.+++||++++.++.+++.+.+++++++.||+||++..+....... ...
T Consensus 266 ------------~-~~~--------~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~ 323 (505)
T 3nyq_A 266 ------------E-LAK--------ALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRA 323 (505)
T ss_dssp ------------H-HHH--------HHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCT
T ss_pred ------------h-hhc--------ccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCC
Confidence 0 000 114789999999999999999999999999999999999987766554433 334
Q ss_pred CCCCCccCCceEEEeecCCCccccC-CCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCCcEEEee
Q 006729 438 GTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIID 515 (633)
Q Consensus 438 ~s~G~p~~~~~i~i~~~~~~~~~~~-~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~l~i~G 515 (633)
+++|+|+++++++|+| +++...+. ++|+.|||+|+|+.++.|||++|+.+.+.| .+|||+|||+|++|+||+++++|
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~G 402 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVG 402 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeC
Confidence 7899999999999999 66554443 447999999999999999999999999999 69999999999999999999999
Q ss_pred ec-cceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHH
Q 006729 516 RK-KNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLL 594 (633)
Q Consensus 516 R~-~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 594 (633)
|. +|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++..+..++++.+ ..++....+.++|+++|+++|
T Consensus 403 R~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv-------~~~~~~~~~~~~l~~~l~~~L 474 (505)
T 3nyq_A 403 RKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIV-------PADPAAPPALGTLADHVAARL 474 (505)
T ss_dssp ESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEE-------ESSTTSCCCHHHHHHHHHHHT
T ss_pred CccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEE-------ECCCCCCCCHHHHHHHHHhhC
Confidence 98 599997 799999999999999999999999999999887777776544 223334455679999999998
Q ss_pred --Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 595 --HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 595 --~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
|++|. +++++ .+|+|+++|..|+.|.
T Consensus 475 ~~~~~P~~i~~v~-----~lP~t~~GKi~r~~L~ 503 (505)
T 3nyq_A 475 APHKRPRVVRYLD-----AVPRNDMGKIMKRALN 503 (505)
T ss_dssp CGGGSCSEEEECS-----CCCC------------
T ss_pred CCCcCccEEEEEC-----CCCCCCCcCeeHHhhc
Confidence 99999 55554 5566667778888774
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.5e-68 Score=585.74 Aligned_cols=480 Identities=18% Similarity=0.172 Sum_probs=379.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 006729 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (633)
Q Consensus 43 ~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA 122 (633)
++|+.++|+++++++|+++|+.+. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999875 3 4899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEeeH
Q 006729 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (633)
Q Consensus 123 ~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (633)
|+++|++++|+++.++.+++.+++++++++++|++.+....+ ... ....+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~----------------------~~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI----------------------SLVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS----------------------EEEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC----------------------cccch
Confidence 999999999999999999999999999999999987643211 111 11222
Q ss_pred HHHHhcc--cCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHH
Q 006729 203 DEFLQLG--ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (633)
Q Consensus 203 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~ 280 (633)
.++.... ...........++++++++|||||||.||+|.+||+++.+......... ..+...++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2222111 1112223455789999999999999999999999999998877765441 1167899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHh
Q 006729 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (633)
Q Consensus 281 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (633)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..++....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888888888999999998754 88999999999999999999999987654210
Q ss_pred hhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccCCCCC-
Q 006729 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM- 434 (633)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~~- 434 (633)
. ....++++|.+++||++++.++.+.+.+.+ ++.+++.||+||+++++........
T Consensus 258 --------------~--------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------F--------CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------C--------STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------c--------ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 0 011226899999999999999999999888 8999999999999887665432211
Q ss_pred ---cccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc----cCCeeecCceEEECC
Q 006729 435 ---SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTGDIGEWQP 507 (633)
Q Consensus 435 ---~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~----~~g~~~TGD~~~~~~ 507 (633)
....++|+|+++++++|+| +++ .++++|+.|||+|+||.++.|||++|+.+.+.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDG--KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTS--CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCc--CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 1235799999999999999 554 567788999999999999999999999999988 357999999999999
Q ss_pred CCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccc-eEEEEEEhHHHHhhccCCCCcccCC-----
Q 006729 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLY-VCAQLVIYKLMVSRCMCLSPKLACP----- 581 (633)
Q Consensus 508 dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 581 (633)
||+++++||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++..+.. .+..++++.+ ..++....
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv-------~~~~~~~~~~~~~ 464 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIV-------VKDGVKERFDREL 464 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEE-------ECTTSGGGCSSHH
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEE-------ecCccccccccch
Confidence 9999999999999997 79999999999999999999999999887543 2233333222 12222111
Q ss_pred -CchhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 582 -FDVEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 582 -~~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
..++|+++|++++ |++|. ++++++ +|+|+++|..|++|.
T Consensus 465 ~~~~~l~~~l~~~l~~~~~P~~i~~v~~-----lP~t~~GKidr~~L~ 507 (521)
T 3l8c_A 465 ELTKAIKASVKDHMMSYMMPSKFLYRDS-----LPLTPNGKIDIKTLI 507 (521)
T ss_dssp HHHHHHHHHSGGGSCGGGSCSEEEECSS-----CCBCTTSSBCHHHHH
T ss_pred hhHHHHHHHHHhhCccccCCeEEEEecc-----cCCCCCcCccHHHHh
Confidence 1357888888887 99999 555554 555666677777663
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-67 Score=621.85 Aligned_cols=509 Identities=25% Similarity=0.294 Sum_probs=337.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006729 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~ 120 (633)
|...++.++|+++++++|+++|+++. + ++ +++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++
T Consensus 58 p~~~tl~~~l~~~a~~~pd~~Al~~~---~--~~--~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~ 130 (979)
T 3tsy_A 58 PNHLSLHDYIFQNISEFATKPCLING---P--TG--HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130 (979)
T ss_dssp CTTSCHHHHHTTTGGGTTTSEEEEET---T--TC--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEC---C--CC--cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHH
Confidence 56789999999999999999999874 2 12 48999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEe
Q 006729 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (633)
Q Consensus 121 lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (633)
|||+++|++++|++|.++.+++.+++++++++++|++......+...... ..+ .++.++..... .......
T Consensus 131 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~------~~~~~~~ 201 (979)
T 3tsy_A 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DGV-VIVCIDDNESV------PIPEGCL 201 (979)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SCC-EEEECCCCTTS------CCCTTEE
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CCc-eEEEeCCcccc------cCCcccc
Confidence 99999999999999999999999999999999999998765544332211 111 33444332110 0011234
Q ss_pred eHHHHHhcccC--CCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchH
Q 006729 201 SWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (633)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (633)
++.++...... ...+.....++++++|+|||||||.||+|.+||+++.+.+........ ....+.++|++++.+|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~~~~~d~~l~~~p~~ 280 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PNLYFHSDDVILCVLPMF 280 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS-CSSCCCSSCEEEECSCSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc-ccccCCCCCEEEEECchH
Confidence 55555433222 122334567899999999999999999999999999988776543210 011578899999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHh
Q 006729 279 HIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (633)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (633)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++....
T Consensus 281 h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------- 338 (979)
T 3tsy_A 281 HIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET---------------------- 338 (979)
T ss_dssp SHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG----------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc----------------------
Confidence 9999865 6677999999999865 999999999999999999999999988663111
Q ss_pred hhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccC----C
Q 006729 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSL----P 431 (633)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~----~ 431 (633)
...++++||.+++||+++++++.+++.+.+ ++++++.||+||++.++.... .
T Consensus 339 -----------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 395 (979)
T 3tsy_A 339 -----------------------EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKE 395 (979)
T ss_dssp -----------------------GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSS
T ss_pred -----------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCC
Confidence 112236899999999999999999999988 899999999999997665432 1
Q ss_pred CCCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccc-cCCeeecCceEEECCCCc
Q 006729 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGS 510 (633)
Q Consensus 432 ~~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~dG~ 510 (633)
......+++|+|+++++++|+| ++. ..++++|+.|||+|+|+.++.|||++|+.+.+.| .+|||+|||+|++|+||+
T Consensus 396 ~~~~~~~~~G~p~~~~~~~i~d-~~~-~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~ 473 (979)
T 3tsy_A 396 PFPVKSGACGTVVRNAEMKIVD-PDT-GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDE 473 (979)
T ss_dssp CCCCCTTCCCEECSSCEEEEEC-TTS-CCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred ccccCCCCcCcccCCcEEEEEe-CCC-CCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCce
Confidence 2223357899999999999998 443 3677789999999999999999999999999999 799999999999999999
Q ss_pred EEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHH
Q 006729 511 LKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFL 590 (633)
Q Consensus 511 l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 590 (633)
++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++..++.++++.+. .+....+.++|+++|
T Consensus 474 l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~--------~~~~~~~~~~l~~~l 544 (979)
T 3tsy_A 474 LFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK--------SKDSELSEDDVKQFV 544 (979)
T ss_dssp EEEEEESCC-----------------------------------------------------------------------
T ss_pred EEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEE--------CCCCCCCHHHHHHHH
Confidence 9999999999997 7999999999999999999999999999998888777775541 222334557899999
Q ss_pred HHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceeeEE
Q 006729 591 LSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLCCV 627 (633)
Q Consensus 591 ~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~~ 627 (633)
++++ |++|. ++++++ +|+|+++|..|++|...
T Consensus 545 ~~~l~~~~~p~~i~~v~~-----lP~t~~GKi~r~~L~~~ 579 (979)
T 3tsy_A 545 SKQVVFYKRINKVFFTES-----IPKAPSGKILRKDLRAK 579 (979)
T ss_dssp ----------------------------------------
T ss_pred HHhcccccCCeEEEEeCC-----cCcCCCCCeeHHHHHHH
Confidence 9988 99998 556654 55666777888888654
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.5e-67 Score=581.44 Aligned_cols=507 Identities=18% Similarity=0.158 Sum_probs=320.6
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeeeeeccC----CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 006729 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDG----KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC 113 (633)
Q Consensus 38 ~~~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~----~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~ 113 (633)
.+....+|+.++|+++++++|+++|+++. ++ ..+..+++||+||.++++++|+.|.+.|+ +||+|+++++|+
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~ 89 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRS 89 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSC
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCC
Confidence 34456688999999999999999999976 32 22334689999999999999999999999 799999999999
Q ss_pred hhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHh
Q 006729 114 PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (633)
Q Consensus 114 ~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 193 (633)
+++++++|||+++|++++|+++.++.+++.+++++++++++|+++........ .....++.... .
T Consensus 90 ~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~--~------- 154 (562)
T 3ite_A 90 LIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------PPETKVLDTKN--Q------- 154 (562)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------CTTCEEEETTC--H-------
T ss_pred HHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------Cccceeecccc--h-------
Confidence 99999999999999999999999999999999999999999998765433210 11112222111 0
Q ss_pred hcCceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhh---hccCCCCCcE
Q 006729 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES---VNEKLTSEDV 270 (633)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~---~~~~~~~~d~ 270 (633)
.+.+....... ........++++++|+|||||||.||+|++||+++.+....+...+.. ....+...++
T Consensus 155 -------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (562)
T 3ite_A 155 -------SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGK 226 (562)
T ss_dssp -------HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCE
T ss_pred -------hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCce
Confidence 12222222211 122234567889999999999999999999999999888776554321 1125778899
Q ss_pred EEEeCchHHHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHH
Q 006729 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (633)
Q Consensus 271 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (633)
+++..|++|..++...+.++..|+++++.+. .+..+.+.++++++|+++++|++++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----------------- 289 (562)
T 3ite_A 227 FLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----------------- 289 (562)
T ss_dssp EECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------
T ss_pred EEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------
Confidence 9999999998888888888999999988754 467888999999999999999987764210
Q ss_pred HHHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccc
Q 006729 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (633)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~ 428 (633)
..+++++|.+++||+++++++.+.+++.+++.+++.||+||++..+..
T Consensus 290 --------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 337 (562)
T 3ite_A 290 --------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSA 337 (562)
T ss_dssp --------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEE
T ss_pred --------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeee
Confidence 012268999999999999999999998889999999999999887776
Q ss_pred cCCCCCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCC--eeecCceEEEC
Q 006729 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTGDIGEWQ 506 (633)
Q Consensus 429 ~~~~~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g--~~~TGD~~~~~ 506 (633)
..........++|+|+++++++|++ ++ ...++++|+.|||+|+|+.++.|||++|+.+...+.+| ||+|||+|++|
T Consensus 338 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d 415 (562)
T 3ite_A 338 GRILPDSDTRCIGHPLGDSVAHVLA-PG-SNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMD 415 (562)
T ss_dssp EECCTTSCTTEEEEECTTCEEEEEC-TT-SSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEEC
T ss_pred eeecCCCCCccccccCCCCeEEEEe-CC-CCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEc
Confidence 5554444457899999999999998 43 34567889999999999999999999999988777777 99999999999
Q ss_pred CCCcEEEeeeccceeEeCCCeeecchHHHHHHhhC-cccceEEEEccCccceEEEEEEhHHHHhhccC-----CCCcccC
Q 006729 507 PDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALV-SAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMC-----LSPKLAC 580 (633)
Q Consensus 507 ~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~-p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 580 (633)
+||+++|+||.||+|++ +|++|+|.|||++|.+| |.+.+++|++.+++..++..++..+....... ...+...
T Consensus 416 ~dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 494 (562)
T 3ite_A 416 ADSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYK 494 (562)
T ss_dssp TTSCEEEEEEC---------------------------------------------------------------------
T ss_pred CCCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchh
Confidence 99999999999999997 89999999999999998 88999999999998776654443332111110 0001112
Q ss_pred CCchhHHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceeeEE
Q 006729 581 PFDVEVCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLCCV 627 (633)
Q Consensus 581 ~~~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~~~ 627 (633)
...++|+++|+++| |++|+ ++++++||++ +..+|..|++|...
T Consensus 495 ~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t----~~~GKi~r~~L~~~ 540 (562)
T 3ite_A 495 EINNSLRQACEQTLPAYMVPDFIIPISFIPLR----DTSAKTDAKALEHM 540 (562)
T ss_dssp --------------------------------------------------
T ss_pred hHHHHHHHHHHhhCCcccCCcEEEEeccCCCC----CCCCcchHHHHHHH
Confidence 23458999999988 99999 6667665543 15677888888654
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.3e-67 Score=584.30 Aligned_cols=498 Identities=17% Similarity=0.188 Sum_probs=395.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006729 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~ 120 (633)
+.+.|+.++|+++++++|+++|+++. ++ +..+++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999986 42 23368999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeecCCCCC---hHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCc
Q 006729 121 EACNALGLHCVPLYDTLG---AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (633)
Q Consensus 121 lA~~~~G~i~v~i~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 197 (633)
|||+++|++++|+++.++ .+++.++++++++++++++.+....+........+....+...
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 146 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI---------------- 146 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence 999999999999999884 5789999999999999998765554433221111111111111
Q ss_pred eEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCch
Q 006729 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (633)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (633)
..+.+... ...........++++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++++|+
T Consensus 147 ---~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 147 ---ALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp ---EGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred ---echhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11111111 1112233456789999999999999999999999999999999988887 89999999999999
Q ss_pred HHHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHH
Q 006729 278 AHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (633)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (633)
+|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+++.+....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------- 282 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------- 282 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------
Confidence 99999887 7788999999998753 78999999999999999999999998876422111
Q ss_pred HhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcC------CeEEEeeccccCCCc
Q 006729 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCAG 425 (633)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~------~~l~~~yG~tE~~~~ 425 (633)
. ...+++++|.+++||+++++++.+++.+.++ ..+++.||+||++.+
T Consensus 283 -------------------~--------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 283 -------------------K--------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp -------------------G--------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred -------------------c--------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 0 1123379999999999999999999998873 479999999999987
Q ss_pred ccccCCC--------------------------CCcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccc
Q 006729 426 TFVSLPN--------------------------EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (633)
Q Consensus 426 ~~~~~~~--------------------------~~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~ 479 (633)
++..... ......++|+|+++ ++|+| ++ ...++++|+.|||+|+|+.++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~-~~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PD-TLIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TT-TCCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CC-CCcCCCCCCEEEEEEeCCcccc
Confidence 7754321 11224688999998 77787 44 3467788999999999999999
Q ss_pred cccCChhhhhccccC-------C--eeecCceEEECCCCcEEEeeeccceeEeCCCeeecchHHHHHH-hhCcccc--eE
Q 006729 480 GYYKREDLTKEVMVD-------G--WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY-ALVSAID--SV 547 (633)
Q Consensus 480 gY~~~~~~~~~~~~~-------g--~~~TGD~~~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l-~~~p~V~--~~ 547 (633)
|||++|+.+.+.|.+ | ||+|||+|++| ||+++|+||.||+|++ +|++|+|.|||++| ..||.|. +|
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~ 489 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKC 489 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccE
Confidence 999999999999843 5 99999999999 9999999999999997 89999999999999 8899999 89
Q ss_pred EEEccCccceEEEEEEhHHHHhhccCCCCcc-cCCCchhHHHHHHHHH---HhhhhhhhheeccCCCCCCCceeeecCce
Q 006729 548 CSSTFCLLYVCAQLVIYKLMVSRCMCLSPKL-ACPFDVEVCCFLLSLL---HILPTVLFLCILPVSPLPTDGVFISKKKK 623 (633)
Q Consensus 548 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~l---~~~p~~~~~~~iP~~~~p~~~~~~~~~~~ 623 (633)
+|++++++.. ..++++.+ ..++. ...+..+|.++|++++ +++|.. .+..+|...+|+|+++|.+|+.
T Consensus 490 ~v~~~~~~~~-~~~~~~v~-------~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~-~i~~v~~~~lP~t~sGKi~R~~ 560 (590)
T 3kxw_A 490 AAFVIQEEHE-YKLTVMCE-------VKNRFMDDVAQDNLFNEIFELVYENHQLEVH-TIVLIPLKAMPHTTSGKIRRNF 560 (590)
T ss_dssp EEEEEEETTE-EEEEEEEE-------ESCTTCCHHHHHHHHHHHHHHHHHHHSCCCC-EEEEEETTCSCCCSCHHHHHHH
T ss_pred EEEEecCCCC-ceEEEEEE-------eccccccchhHHHHHHHHHHHHHHHcCCcee-EEEEECCCccCcCCCcHHHHHH
Confidence 9999988764 33344322 12221 1233467889998877 556641 1223567889999999999988
Q ss_pred ee
Q 006729 624 LC 625 (633)
Q Consensus 624 ~~ 625 (633)
|.
T Consensus 561 L~ 562 (590)
T 3kxw_A 561 CR 562 (590)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5.6e-66 Score=575.65 Aligned_cols=501 Identities=17% Similarity=0.228 Sum_probs=394.6
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 006729 31 FAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYG 110 (633)
Q Consensus 31 ~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~ 110 (633)
...+.+|.+.+.+.++.++|+++++++|+.+++... .+..+++||+||.++++++|+.|.+.|+++||+|++++
T Consensus 8 ~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (576)
T 3gqw_A 8 IFTHSLPMRYADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81 (576)
T ss_dssp ------CCCCSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEEC
T ss_pred hhcCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 345567777788999999999999999998887532 22236899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCeEeecCCCCC-------hHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecC
Q 006729 111 VNCPEWIIGMEACNALGLHCVPLYDTLG-------AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183 (633)
Q Consensus 111 ~n~~~~~~~~lA~~~~G~i~v~i~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~ 183 (633)
+|++++++++|||+++|++++|+++.++ .+++.++++++++++++++++....+....... ..+ .+
T Consensus 82 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~~----- 154 (576)
T 3gqw_A 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PEL-HV----- 154 (576)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTC-EE-----
T ss_pred CCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccc-ee-----
Confidence 9999999999999999999999999998 789999999999999999987665544332211 111 11
Q ss_pred CChhhHHHHhhcCceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHh-hhhhc
Q 006729 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL-LESVN 262 (633)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~-~~~~~ 262 (633)
..... ...............++++++++|||||||.||+|.++|+++.+.+...... +
T Consensus 155 ----------------~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---- 213 (576)
T 3gqw_A 155 ----------------LSHAW-FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI---- 213 (576)
T ss_dssp ----------------EEHHH-HHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS----
T ss_pred ----------------cchhh-hhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc----
Confidence 11111 1111122223344568999999999999999999999999999888776543 4
Q ss_pred cCCCCCcEEEEeCchHHHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHH
Q 006729 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336 (633)
Q Consensus 263 ~~~~~~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~ 336 (633)
++.++|++++++|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 214 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~- 291 (576)
T 3gqw_A 214 -KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK- 291 (576)
T ss_dssp -CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH-
T ss_pred -CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc-
Confidence 7899999999999999999876 5566889999888752 8899999999999999999999998775532111
Q ss_pred hccChhHHHHHHHHHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc------C
Q 006729 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA------C 410 (633)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~------~ 410 (633)
.....+++++|.+++||+++++++.+++.+.+ +
T Consensus 292 -----------------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 292 -----------------------------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp -----------------------------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred -----------------------------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 11222347899999999999999999999887 6
Q ss_pred CeEEEeeccccCCCcccccCCCCC---------------------------cccCCCCCccCCceEEEeecCCCccccCC
Q 006729 411 AHVLQGYGLTETCAGTFVSLPNEM---------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALS 463 (633)
Q Consensus 411 ~~l~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~s~G~p~~~~~i~i~~~~~~~~~~~~ 463 (633)
..+++.||+||++.+++....... ....++|+|+++++++|+| +++ .+++
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g--~~~~ 407 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAG--MPVA 407 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTS--CBCC
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCC--CCCC
Confidence 899999999999988776543211 0123799999999999998 544 5677
Q ss_pred CCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcc
Q 006729 464 STPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSA 543 (633)
Q Consensus 464 ~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~ 543 (633)
+|+.|||+|+|+.++.|||++++.+.+.+.+|||+|||+|++ +||+++++||.||+||+ +|++|+|.|||++|.+||+
T Consensus 408 ~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 408 ERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp TTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSS
T ss_pred CCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcc
Confidence 889999999999999999999999888889999999999999 69999999999999998 8999999999999999999
Q ss_pred cceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHH---HhhhhhhhheeccCCCCCCCceeeec
Q 006729 544 IDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLL---HILPTVLFLCILPVSPLPTDGVFISK 620 (633)
Q Consensus 544 V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l---~~~p~~~~~~~iP~~~~p~~~~~~~~ 620 (633)
|.+++|++..++.....+... .... ......++.+++++++ +++|..+ ..+|...+|+|.++|..
T Consensus 486 V~~~~vv~~~~~~~~~~~~~~---------~~~~-~~~~~~~l~~~l~~~l~~~~~~p~~i--~~v~~~~lP~t~~GKi~ 553 (576)
T 3gqw_A 486 IHSGDAIAFVTAQEKIILQIQ---------CRIS-DEERRGQLIHALAARIQSEFGVTAAI--DLLPPHSIPRTSSGKPA 553 (576)
T ss_dssp CCTTSEEEEECTTSCEEEEEE---------CCCC-CHHHHHHHHHHHHHHHHHHHSCCEEE--EEECSSCSCBCTTSSBC
T ss_pred cccccEEEEEcCCccEEEEEE---------EecC-chhHHHHHHHHHHHHHHHHhCCceeE--EEECCCCcCcCCCccch
Confidence 999877776555333222220 0111 1122347888888766 7777732 23566788888899999
Q ss_pred Cceee
Q 006729 621 KKKLC 625 (633)
Q Consensus 621 ~~~~~ 625 (633)
|+.|.
T Consensus 554 r~~l~ 558 (576)
T 3gqw_A 554 RAEAK 558 (576)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-64 Score=611.49 Aligned_cols=477 Identities=19% Similarity=0.245 Sum_probs=391.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 006729 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (633)
Q Consensus 41 ~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~ 120 (633)
....++.++|+++++++|+++|+++. +. ++||+||.++++++|+.|.+.|+++|++|+|+++|++++++++
T Consensus 461 ~~~~~l~~~~~~~~~~~p~~~Av~~~---~~------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~ 531 (1304)
T 2vsq_A 461 HETKPLTYWFKEAVNANPDAPALTYS---GQ------TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI 531 (1304)
T ss_dssp CCCCCHHHHHHHHHHHCTTSEEEESS---SC------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEEC---Ce------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHH
Confidence 33478999999999999999999975 43 8999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCChhhHHHHhhcCceEe
Q 006729 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (633)
Q Consensus 121 lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (633)
|||+++|++++|++|.++.+++.++++++++++++++......+.. + +.....+.+++..
T Consensus 532 lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-~----~~~~~~~~~~~~~--------------- 591 (1304)
T 2vsq_A 532 LGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-L----PYTGTTLFIDDQT--------------- 591 (1304)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-C----CCCSEEEESSCGG---------------
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-c----CCCCcEEEecccc---------------
Confidence 9999999999999999999999999999999999998765433211 1 1112333332210
Q ss_pred eHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHH
Q 006729 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (633)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~ 280 (633)
. .. ...........++++||++|||||||.||||+++|+++.+. ......+ ++.++++++++.|++|.
T Consensus 592 ---~-~~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd 659 (1304)
T 2vsq_A 592 ---R-FE--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFD 659 (1304)
T ss_dssp ---G-GG--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTST
T ss_pred ---c-cc--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHH
Confidence 0 00 01111223456899999999999999999999999999876 3333334 78899999999999988
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHh
Q 006729 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (633)
Q Consensus 281 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (633)
.+...++.++..|+++++.+. ++..+.+.|.++++|+++++|+++..+.+.....
T Consensus 660 ~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~--------------------- 718 (1304)
T 2vsq_A 660 AFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW--------------------- 718 (1304)
T ss_dssp HHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH---------------------
T ss_pred HHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc---------------------
Confidence 888778889999999999864 8999999999999999999999999886521000
Q ss_pred hhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhc-CCeEEEeeccccCCCcccccCCCC--
Q 006729 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (633)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~-~~~l~~~yG~tE~~~~~~~~~~~~-- 433 (633)
+ +++|.+++|||+++.++.+.+.+.+ +..+++.||+||++.+++......
T Consensus 719 -------------------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 771 (1304)
T 2vsq_A 719 -------------------M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP 771 (1304)
T ss_dssp -------------------H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCC
T ss_pred -------------------C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcc
Confidence 0 3799999999999999999988877 478999999999998776543322
Q ss_pred -CcccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhcccc-------CCeeecCceEEE
Q 006729 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGDIGEW 505 (633)
Q Consensus 434 -~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~-------~g~~~TGD~~~~ 505 (633)
.....++|+|++|++++|+| +++ .+++.|+.|||+|+|+.++.||+|+|+.|.+.|. ++||+|||+|++
T Consensus 772 ~~~~~~~iG~p~~~~~~~i~d-~~~--~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~ 848 (1304)
T 2vsq_A 772 DSISSLPIGKPISNASVYILN-EQS--QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARW 848 (1304)
T ss_dssp SSCSSCCCBEECTTEEEEEEC-TTS--CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEE
T ss_pred ccCCCCCCceeeCCCEEEEEC-CCc--CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEE
Confidence 22246899999999999999 544 5677889999999999999999999999999982 349999999999
Q ss_pred CCCCcEEEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchh
Q 006729 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVE 585 (633)
Q Consensus 506 ~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (633)
++||+++|+||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++...+..++++.+ +. ...+.++
T Consensus 849 ~~dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv---------~~-~~~~~~~ 917 (1304)
T 2vsq_A 849 LPDGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLV---------NR-TQLSAED 917 (1304)
T ss_dssp CTTSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEE---------CS-SSSCHHH
T ss_pred cCCCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEe---------CC-CCCCHHH
Confidence 999999999999999998 799999999999999999999999999887766666565433 11 1345578
Q ss_pred HHHHHHHHH--Hhhhh-hhhheeccCCCCCCCceeeecCceee
Q 006729 586 VCCFLLSLL--HILPT-VLFLCILPVSPLPTDGVFISKKKKLC 625 (633)
Q Consensus 586 l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~~~~~~~~~~~~~ 625 (633)
|+++|+++| |++|. ++++++ +|+|+++|..|+.|.
T Consensus 918 l~~~l~~~Lp~ymvP~~~~~l~~-----lP~t~~GKidR~~L~ 955 (1304)
T 2vsq_A 918 VKAHLKKQLPAYMVPQTFTFLDE-----LPLTTNGKVNKRLLP 955 (1304)
T ss_dssp HHHHHHHHSCGGGSCSEEEEESC-----CCCCSSCSSCCSCCC
T ss_pred HHHHHHHhChHhhhccEEEEecc-----cCCCCCcccCHhhcC
Confidence 999999988 99999 556654 556666778888774
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=5.9e-57 Score=491.44 Aligned_cols=413 Identities=16% Similarity=0.196 Sum_probs=318.0
Q ss_pred CccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 006729 30 LFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIY 109 (633)
Q Consensus 30 ~~~~~~~~~~~~~~~~i~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~ 109 (633)
.+.+++.+......+++.++|+++++++|+++|+++.+..++..+..+++||+||.++++++|+.|.+.|+ +||+|+|+
T Consensus 10 ~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~ 88 (480)
T 3t5a_A 10 HSSGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVIS 88 (480)
T ss_dssp --------------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEE
T ss_pred CCCCCCcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEE
Confidence 34444445555567899999999999999999999872111334556799999999999999999999996 99999999
Q ss_pred eCCchhHHHHHHHHHhcCCeEeecCC---CCChHHHHHHHhccCceEEEecCCChhhHhhcCCCccc-CccEEEEecCCC
Q 006729 110 GVNCPEWIIGMEACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE-HLKTIVSFSKVK 185 (633)
Q Consensus 110 ~~n~~~~~~~~lA~~~~G~i~v~i~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~ 185 (633)
++|++++++++|||+++|++++|+++ .++.+++.+++++++++++|++......+.+....... ....++.++...
T Consensus 89 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (480)
T 3t5a_A 89 APQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD 168 (480)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC
T ss_pred cCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc
Confidence 99999999999999999999999999 77899999999999999999999887776665433211 111233222110
Q ss_pred hhhHHHHhhcCceEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCC
Q 006729 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (633)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~ 265 (633)
. ............++++++|+|||||||.||+|++||+++.+.+......+ ..
T Consensus 169 ---------------------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~ 221 (480)
T 3t5a_A 169 ---------------------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FA 221 (480)
T ss_dssp ---------------------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CT
T ss_pred ---------------------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----cc
Confidence 0 01112223455678999999999999999999999999999998887776 56
Q ss_pred CC------CcEEEEeCchHHHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCeEEEechHHHHHHHHHHH
Q 006729 266 TS------EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333 (633)
Q Consensus 266 ~~------~d~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~ 333 (633)
.. ++++++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|+++..++....
T Consensus 222 ~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~ 300 (480)
T 3t5a_A 222 DTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRT 300 (480)
T ss_dssp TTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHC
T ss_pred ccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhc
Confidence 66 999999999999999765 6778999999999752 899999999999999 8899998888765321
Q ss_pred HHHhccChhHHHHHHHHHHhHHhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcC---
Q 006729 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC--- 410 (633)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~--- 410 (633)
.. +. ....++++||.+++||+++++++.+++.+.++
T Consensus 301 ~~---------------------------------~~--------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 339 (480)
T 3t5a_A 301 TD---------------------------------DD--------MAGRDLGNILTILSGSERVQAATIKRFADRFARFN 339 (480)
T ss_dssp CT---------------------------------GG--------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGT
T ss_pred Cc---------------------------------cc--------ccccchhhhheeeecCCcCCHHHHHHHHHHHhhcC
Confidence 10 00 11223479999999999999999999999874
Q ss_pred ---CeEEEeeccccCCCcccccCCCC------------------------CcccCCCCCccCCceEEEeecCCCccccCC
Q 006729 411 ---AHVLQGYGLTETCAGTFVSLPNE------------------------MSMIGTVGPPVPNVDVCLESVPEMEYDALS 463 (633)
Q Consensus 411 ---~~l~~~yG~tE~~~~~~~~~~~~------------------------~~~~~s~G~p~~~~~i~i~~~~~~~~~~~~ 463 (633)
+.+++.||+||++.+++...... .....++|+|++ ++++|+| +++ ..+++
T Consensus 340 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~ 416 (480)
T 3t5a_A 340 LQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECP 416 (480)
T ss_dssp CCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECC
T ss_pred CChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCC
Confidence 47999999999998877655432 123468999999 9999999 443 35677
Q ss_pred CCCCCeEEEecCcccccccCChhhhhccc------------cCCeeecCceEEECCCCcEEEeee
Q 006729 464 STPRGEVCVKGSTVFSGYYKREDLTKEVM------------VDGWFHTGDIGEWQPDGSLKIIDR 516 (633)
Q Consensus 464 ~g~~Gei~v~g~~~~~gY~~~~~~~~~~~------------~~g~~~TGD~~~~~~dG~l~i~GR 516 (633)
+|+.|||+|+|+.++.|||++|+.+.+.| .+|||+|||+|++| ||+|+|+||
T Consensus 417 ~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 417 DGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 88999999999999999999999999988 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.1e-47 Score=398.45 Aligned_cols=306 Identities=16% Similarity=0.131 Sum_probs=251.0
Q ss_pred CCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEc
Q 006729 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (633)
Q Consensus 221 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 300 (633)
.+++|||+|||||||.||+|++||+++.+.+......+ ++.++|++++++|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999999988888 8999999999999999999998888999999999876
Q ss_pred CCHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhhhcCCCCcCcchhhHHHhHHHHH
Q 006729 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380 (633)
Q Consensus 301 ~~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 380 (633)
. ....++.++++++|+++++|+++..+++....
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------------- 143 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT---------------------------------------------- 143 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------
Confidence 4 23346789999999999999999988662110
Q ss_pred HhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCCCcccCCCCCccCCceEEEeecCCCccc
Q 006729 381 QSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460 (633)
Q Consensus 381 ~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~i~i~~~~~~~~~ 460 (633)
..++++||.+++||+++++++.+++++ +++++++.||+||++..+.....+.... +++|.+.|++++.+.+
T Consensus 144 ~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 144 SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 011258999999999999999999986 6999999999999988777665554433 7899999999887654
Q ss_pred cCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCCCcEEEeeeccceeEeCCCeeecchHHHHHH--
Q 006729 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY-- 538 (633)
Q Consensus 461 ~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~i~GR~~d~i~~~~G~~v~p~~iE~~l-- 538 (633)
.|||+++|+.. .+|||+|||+|++|+|| ++++||.||+|++ +|++|+|.|||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998643 36899999999999888 6677999999997 79999999999877
Q ss_pred -hhCcccceEEEE-ccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHH--Hhhhh-hhhheeccCCCCCC
Q 006729 539 -ALVSAIDSVCSS-TFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLL--HILPT-VLFLCILPVSPLPT 613 (633)
Q Consensus 539 -~~~p~V~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~p~-~~~~~~iP~~~~p~ 613 (633)
.+||.|.+|+|+ +.+++..++.++++.+ +.......++|+++|+++| |++|+ ++++++| |+
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~---------~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~l-----P~ 337 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIE---------NAMPEALTERLTAEIRSRVSTYENPKHIYFAKAF-----AK 337 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEE---------SCCCHHHHHHHHHHHHHHSCGGGSCSCEEEESSC-----CB
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEE---------CCCCCcCHHHHHHHHHhhCCCCCCceEEEEECCc-----CC
Confidence 568999998876 6778877777666433 2222334468999999988 99999 6666655 55
Q ss_pred CceeeecCcee
Q 006729 614 DGVFISKKKKL 624 (633)
Q Consensus 614 ~~~~~~~~~~~ 624 (633)
|+.+|.+|++|
T Consensus 338 t~~GKi~R~~L 348 (358)
T 4gs5_A 338 TQTDKIDKRAT 348 (358)
T ss_dssp CTTSCBCHHHH
T ss_pred CCCCChhHHHH
Confidence 66667777765
No 33
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.3e-43 Score=377.96 Aligned_cols=334 Identities=16% Similarity=0.095 Sum_probs=256.2
Q ss_pred CCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCch-HHHHHHHHHHHHHHcCcE
Q 006729 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAA 295 (633)
Q Consensus 217 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~ 295 (633)
....++++++++|||||||.||+|.+||+++......+...+.. .++.++|++++.+|+ .|..++...+.++..|++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 34567899999999999999999999999998877655432211 168899999999998 677777777888999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhhhcCCCCcCcchhhHHH
Q 006729 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (633)
Q Consensus 296 ~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 374 (633)
+++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------------------------- 207 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP----------------------------------- 207 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 987765 99999999999999999999999999887544321110
Q ss_pred hHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCc-ccccCCCCCcccCCCCCccCCceEEEee
Q 006729 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (633)
Q Consensus 375 ~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~-~~~~~~~~~~~~~s~G~p~~~~~i~i~~ 453 (633)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........ ...+.+.+++.++|+|
T Consensus 208 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d 276 (437)
T 2y27_A 208 --------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID 276 (437)
T ss_dssp --------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC
T ss_pred --------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc
Confidence 0158999999999999999999999899999999999998543 332222111 1245566899999998
Q ss_pred cCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECC-CCcE-----EEeeeccceeEeCCCe
Q 006729 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP-DGSL-----KIIDRKKNIFKLSQGE 527 (633)
Q Consensus 454 ~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~-dG~l-----~i~GR~~d~i~~~~G~ 527 (633)
+++ ..++++|+.|||+|+|. +.+.|.++||+|||+|++++ +|++ +++||.+|+|++ +|+
T Consensus 277 -~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~ 341 (437)
T 2y27_A 277 -PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGV 341 (437)
T ss_dssp -TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTE
T ss_pred -CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCe
Confidence 443 46778899999999983 33445689999999999998 6985 899999999998 799
Q ss_pred eecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccC--CCchhHHHHHHHHH--H-hhhh-hh
Q 006729 528 YVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLAC--PFDVEVCCFLLSLL--H-ILPT-VL 601 (633)
Q Consensus 528 ~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~l--~-~~p~-~~ 601 (633)
+|+|.+||++|.+||+|.++++++++++..+..++++.+ ..++... .+.++++++|++++ + ++|. +.
T Consensus 342 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~-------~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~ 414 (437)
T 2y27_A 342 NVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVE-------PCPETAPDTAAIQVAKQALAYDIKSLIGVTAVIN 414 (437)
T ss_dssp EECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEEC-------BCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEE-------ECCCccchhhhHHHHHHHHHHHHHHhcCCceEEE
Confidence 999999999999999999999999877665666665433 1222111 22357899999887 5 4776 44
Q ss_pred hh--eeccCCCCCCCceeeecC
Q 006729 602 FL--CILPVSPLPTDGVFISKK 621 (633)
Q Consensus 602 ~~--~~iP~~~~p~~~~~~~~~ 621 (633)
++ ++||+++ .|....+.+|
T Consensus 415 ~v~~~~lP~t~-GKi~r~~~~R 435 (437)
T 2y27_A 415 VLPVNGIERSV-GKARRVVDKR 435 (437)
T ss_dssp ECCTTCSCCCS-SSCCCEEECC
T ss_pred EeCCCCccCCC-CcceEEEecC
Confidence 54 3555555 5444444443
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.6e-43 Score=378.72 Aligned_cols=330 Identities=16% Similarity=0.120 Sum_probs=252.5
Q ss_pred CCCC-CCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHH-HHHHHHHHcCcE
Q 006729 218 VKKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAA 295 (633)
Q Consensus 218 ~~~~-~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~-~~~~~~l~~G~~ 295 (633)
...+ +++++++|||||||.||+|.+||+++.+....+.+.+.. .++.++|++++.+|+.|..+. ...+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 4455 889999999999999999999999998877666443321 168899999999998755554 456777999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHhhhhcCCCCcCcchhhHHH
Q 006729 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (633)
Q Consensus 296 ~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 374 (633)
+++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 998755 89999999999999999999999999987654432110
Q ss_pred hHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCcccccCCCCCcccCCCCCccCCceEEEeec
Q 006729 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESV 454 (633)
Q Consensus 375 ~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~i~i~~~ 454 (633)
.++++|.+++||+++++++.+++++.+|+++++.||+||+++.++...... . ...|.|.+++.++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d- 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIID- 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEEC-
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEE-
Confidence 125899999999999999999999999999999999999965432222111 1 2356677899999998
Q ss_pred CCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCCC------c---EEEeeeccceeEeCC
Q 006729 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDG------S---LKIIDRKKNIFKLSQ 525 (633)
Q Consensus 455 ~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~dG------~---l~i~GR~~d~i~~~~ 525 (633)
++. ..++++|+.|||+|+|. +.+.|.++||+|||+|+++++| + ++|+||.+|+|++ +
T Consensus 272 ~~~-g~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~ 337 (436)
T 3qov_A 272 PET-GEPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-K 337 (436)
T ss_dssp TTT-CSBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-T
T ss_pred CCC-CCCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-C
Confidence 433 36777899999999983 2344568999999999999998 5 6999999999998 7
Q ss_pred CeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCC----chhHHHHHHHHH--H-hhh
Q 006729 526 GEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPF----DVEVCCFLLSLL--H-ILP 598 (633)
Q Consensus 526 G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~l--~-~~p 598 (633)
|++|+|.+||++|.+||+|.+++|++.+++..+..++++.+ .. ....+ ..++++++++++ + ++|
T Consensus 338 G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~-------~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~p 408 (436)
T 3qov_A 338 GVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVE-------LS--DLSTDNYIELEKIRRDIIRQLKDEILVT 408 (436)
T ss_dssp TEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEE-------EC--TTCCCCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEE-------Ec--CccccchhhHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999988766666665443 12 11222 357888898877 5 677
Q ss_pred h-hhhhe--eccCCCCCCCceeeec
Q 006729 599 T-VLFLC--ILPVSPLPTDGVFISK 620 (633)
Q Consensus 599 ~-~~~~~--~iP~~~~p~~~~~~~~ 620 (633)
. +.+++ +||+|+ .|....+.+
T Consensus 409 ~~i~~v~~~~lP~t~-GKi~R~~~~ 432 (436)
T 3qov_A 409 PKVKLVKKGSLPQSE-GKAVRVKDL 432 (436)
T ss_dssp CEEEEECTTCCC--------CEEEC
T ss_pred eEEEEeCCCcccCcC-CcceEEEec
Confidence 7 55665 555555 544433333
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1e-42 Score=374.76 Aligned_cols=348 Identities=15% Similarity=0.118 Sum_probs=259.3
Q ss_pred EeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCch-
Q 006729 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL- 277 (633)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl- 277 (633)
+.+.+++.... +.......++++++++|||||||.||+|.+||+++......+...+.. .++.++|++++.+|+
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYG 146 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCc
Confidence 34455554432 222334567899999999999999999999999998876655442211 178899999999998
Q ss_pred HHHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhHHh
Q 006729 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (633)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (633)
.|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 209 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------- 209 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 477777777888999999988765 99999999999999999999999999887544321110
Q ss_pred hhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHHHhcCCeEEEeeccccCCCc-ccccCCCCCc
Q 006729 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMS 435 (633)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~~~~~~~l~~~yG~tE~~~~-~~~~~~~~~~ 435 (633)
.++++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........
T Consensus 210 --------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~- 262 (443)
T 2y4o_A 210 --------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK- 262 (443)
T ss_dssp --------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC-
T ss_pred --------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC-
Confidence 0158999999999999999999999999999999999998543 222222111
Q ss_pred ccCCCCCccCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECCC-CcE---
Q 006729 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD-GSL--- 511 (633)
Q Consensus 436 ~~~s~G~p~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~d-G~l--- 511 (633)
...+.+.+++.++|+| +++ ..++++|+.|||+|+|. +.+.|.++||+|||+|+++++ |++
T Consensus 263 --~g~~~~~~~~~~~i~d-~~~-g~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~ 326 (443)
T 2y4o_A 263 --DGPVIWEDHFYPEIID-PVT-GEVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRR 326 (443)
T ss_dssp --CSEEECTTTEEEEEEC-TTT-CCBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCE
T ss_pred --CceEEccCCeEEEEEc-CCC-CCCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccc
Confidence 0134466889999998 443 45777899999999983 234456889999999999999 987
Q ss_pred --EEeeeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCC--cc--cCCCchh
Q 006729 512 --KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSP--KL--ACPFDVE 585 (633)
Q Consensus 512 --~i~GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~ 585 (633)
+++||.+|+|++ +|++|+|.+||++|.+||+|.++++++++++..+..++++.+. .+ +. ...+.++
T Consensus 327 l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~-------~~~~~~~~~~~~~~~ 398 (443)
T 2y4o_A 327 LAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVEL-------RSEAAASVTDGERAA 398 (443)
T ss_dssp ECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEE-------CHHHHTTCCHHHHHH
T ss_pred cCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEE-------CCcccccchhhHHHH
Confidence 899999999997 7999999999999999999999999998776545555543331 11 10 1122357
Q ss_pred HHHHHHHHH--H-hhhh-hhhheeccCCCCCCCceeeecCc
Q 006729 586 VCCFLLSLL--H-ILPT-VLFLCILPVSPLPTDGVFISKKK 622 (633)
Q Consensus 586 l~~~l~~~l--~-~~p~-~~~~~~iP~~~~p~~~~~~~~~~ 622 (633)
++++|++++ | ++|. +.++ +...+|+|.++|.+|+
T Consensus 399 l~~~l~~~l~~~~~~p~~v~~v---~~~~lP~t~~GKi~r~ 436 (443)
T 2y4o_A 399 LARELQHRIKTMVGVSSGVTVL---AAGGIPATATGKARRV 436 (443)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEE---CTTCSCCCTTSCCCSE
T ss_pred HHHHHHHHHHHHhCCceEEEEe---CCCcccCccCCcceEE
Confidence 999999887 4 4786 4444 2334445555555554
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=1.6e-27 Score=249.83 Aligned_cols=237 Identities=14% Similarity=0.103 Sum_probs=175.7
Q ss_pred CCCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCch-HHHHHHHHHHHHHHcCcEEE
Q 006729 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAIG 297 (633)
Q Consensus 219 ~~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~~~~g~~~~~~~l~~G~~~~ 297 (633)
..++++++++|||||||.||+|.++|+++......+...+.. .++.++|++++.+|+ .|.+|+...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 367889999999999999999999999999988865433321 167899999999999 89999988888899999444
Q ss_pred EEcCCHH-----------------------HHHHHhhhcCCeEEEechHHHHHHHHHHHHHHhccChhHHHHHHHHHHhH
Q 006729 298 FWRGDVK-----------------------LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (633)
Q Consensus 298 ~~~~~~~-----------------------~~~~~i~~~k~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (633)
...+++. .+++.++++++|+++++|+++..|++....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~-------------------- 225 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV-------------------- 225 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH--------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh--------------------
Confidence 4344666 788899999999999999999998663211
Q ss_pred HhhhhcCCCCcCcchhhHHHhHHHHHHhcCCcEEEEEecCCCCcHHHHHHHH-Hhc-CCeEEEeeccccCCCcccccCCC
Q 006729 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR-VVA-CAHVLQGYGLTETCAGTFVSLPN 432 (633)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~lr~i~~~G~~l~~~l~~~~~-~~~-~~~l~~~yG~tE~~~~~~~~~~~ 432 (633)
...++ +++|.+++||+++++++.+++. +.+ ++++++.||+||+++++..+..
T Consensus 226 -----------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 226 -----------------VLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp -----------------HHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred -----------------hcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 11111 4899999999999999999999 888 8999999999999876643321
Q ss_pred CCcccCCCCCc------cCCceEEEeecCCCccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEEC
Q 006729 433 EMSMIGTVGPP------VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQ 506 (633)
Q Consensus 433 ~~~~~~s~G~p------~~~~~i~i~~~~~~~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~ 506 (633)
.++|+| +++++++|+| +++ ..++++|+.|||+|++..... + --+|+|||++...
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~-g~~vp~G~~GEl~vt~l~~~~------------~-l~ry~tgD~~~~~ 339 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SIT-AQTVEYGERGNVIVTHLSPWA------------F-YPRVAERDTAIRL 339 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTT-CSBCCTTCEEEEEEEEEETTE------------E-EEEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCC-CcCCCCCCceEEEEEEcCccc------------c-cccccCCceEEEe
Confidence 148999 9999999998 532 467788999999998743211 1 1258999998875
Q ss_pred CC--C-------cEEEeeeccceeEe
Q 006729 507 PD--G-------SLKIIDRKKNIFKL 523 (633)
Q Consensus 507 ~d--G-------~l~i~GR~~d~i~~ 523 (633)
+. | .+..++|.++..+|
T Consensus 340 ~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 340 PGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp CCSTTCSSCEEEEEEECC--------
T ss_pred cCCCCCcCcccccceeccccCCCcee
Confidence 43 2 25566676766666
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.09 E-value=1.9e-11 Score=103.34 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=63.1
Q ss_pred eeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCC--chhHHHHHHH
Q 006729 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPF--DVEVCCFLLS 592 (633)
Q Consensus 515 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~ 592 (633)
.|.||||++ +|.+|+|.+||++|.+||+|.++++++++++..+..+.++.+ ..+...... ..++.+.+++
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~-------~~~~~~~~~~~~~~l~~~i~~ 72 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVE-------LSQLFTDDYGRLQALTREITR 72 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEE-------ECTTCCCCHHHHHHHHHHHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEE-------EeeccccccchhhhhHHHHHH
Confidence 489999998 799999999999999999999999999999887777665433 122222111 1244555555
Q ss_pred HH---Hhhhh-hhhheeccCCCCCCCceeeecC
Q 006729 593 LL---HILPT-VLFLCILPVSPLPTDGVFISKK 621 (633)
Q Consensus 593 ~l---~~~p~-~~~~~~iP~~~~p~~~~~~~~~ 621 (633)
++ ..+|. +.+ +|...|||| ++|.+|
T Consensus 73 ~l~~~~gv~~~v~~---v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 73 QLKDEILVTPRVKL---VPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHSSCCEEEE---ECTTCSCCC----CCC
T ss_pred HHHHHhCCccceEE---EcCCeecCC-CCCcch
Confidence 44 12332 333 456677777 577766
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.05 E-value=1.6e-10 Score=97.36 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=64.0
Q ss_pred eeccceeEeCCCeeecchHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccC---CCchhHHHHHH
Q 006729 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLAC---PFDVEVCCFLL 591 (633)
Q Consensus 515 GR~~d~i~~~~G~~v~p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~ 591 (633)
||.+|+|++ +|.+++|.+||++|.+||+|.++++++++++..++.++++.+ + ++... .+..+|.++++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve-------~-~~~~~~~~~~~~~l~~~i~ 71 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVE-------L-SQLFTDDYGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEE-------E-CTTCCCCHHHHHHHHHHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEE-------E-cCccccchhHHHHHHHHHH
Confidence 899999998 799999999999999999999999998888877777666544 1 22111 12235666666
Q ss_pred HHH---HhhhhhhhheeccCCCCCCCceeeecCc
Q 006729 592 SLL---HILPTVLFLCILPVSPLPTDGVFISKKK 622 (633)
Q Consensus 592 ~~l---~~~p~~~~~~~iP~~~~p~~~~~~~~~~ 622 (633)
+++ +.+|. .+..+|...+|+| ++|.+|.
T Consensus 72 ~~l~~~~~~~~--~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 72 RQLKDEILVTP--RVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHSSCC--EEEEECTTCSCCC----CCCE
T ss_pred HHHHHhhCCce--EEEEECCCCccCC-CCceEEE
Confidence 655 23333 2223455567777 7776653
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.90 E-value=1.7e-08 Score=108.77 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=83.1
Q ss_pred EEEEEecCCCCcHHHHHHHHHhc-CCeEE-EeeccccCCCcccccCCCCCcccCCCCCc-cCC-ceEEEeecCCC-----
Q 006729 387 VRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGPP-VPN-VDVCLESVPEM----- 457 (633)
Q Consensus 387 lr~i~~~G~~l~~~l~~~~~~~~-~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~s~G~p-~~~-~~i~i~~~~~~----- 457 (633)
+.++..||. ..-...++..+ +.+++ ..|++||+ .+.+...+... +...|.. +++ +-.+.++.++.
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~--~~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLCK--PEDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTSC--GGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCCC--cccCceeecCCcEEEEEEeccccCCCcE
Confidence 777777773 22234444443 67777 99999995 22222211110 0122221 233 23334442221
Q ss_pred -ccccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECC----CCcEEEeeeccceeEeCCCeeecch
Q 006729 458 -EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP----DGSLKIIDRKKNIFKLSQGEYVAVE 532 (633)
Q Consensus 458 -~~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~----dG~l~i~GR~~d~i~~~~G~~v~p~ 532 (633)
....+..|+.+||.|+.. .|.|. |++||+.+++. ..++.|+||.+++|.+ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 123445778899999775 24443 99999999875 3579999999999997 79999999
Q ss_pred HHHHHHhhC
Q 006729 533 NLENIYALV 541 (633)
Q Consensus 533 ~iE~~l~~~ 541 (633)
+||++|.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999643
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.86 E-value=3.8e-08 Score=106.30 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=81.8
Q ss_pred EEEEEecCCCCcHHHHHHHHHhc-CCeEE-EeeccccCCCcccccCCCCCcccCCCCC-ccCCc-eEEEeecCCC-----
Q 006729 387 VRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPNV-DVCLESVPEM----- 457 (633)
Q Consensus 387 lr~i~~~G~~l~~~l~~~~~~~~-~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~s~G~-p~~~~-~i~i~~~~~~----- 457 (633)
+.++..||. ..-...++..+ +.+++ ..|++||+- +.+...+... +...+. .+|+. =.+.++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~--p~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMSK--PSEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTSC--GGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCCC--cccCceeecCCcEEEEEEeccccccccc
Confidence 666677773 22234444433 57776 999999963 3322211110 011222 22332 2334432221
Q ss_pred -c-------cccCCCCCCCeEEEecCcccccccCChhhhhccccCCeeecCceEEECC----CCcEEEeeeccceeEeCC
Q 006729 458 -E-------YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP----DGSLKIIDRKKNIFKLSQ 525 (633)
Q Consensus 458 -~-------~~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~----dG~l~i~GR~~d~i~~~~ 525 (633)
. ...+..|+.+||.|+.. .|.|. |++||+++++. ..++.|+||.+++|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 23455778999999654 45554 99999999873 4689999999999997 7
Q ss_pred CeeecchHHHHHHh
Q 006729 526 GEYVAVENLENIYA 539 (633)
Q Consensus 526 G~~v~p~~iE~~l~ 539 (633)
|+++++.+||++|.
T Consensus 444 Geki~~~~v~~av~ 457 (609)
T 4b2g_A 444 SDKTDEAELQKAVD 457 (609)
T ss_dssp SCCBCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH
Confidence 99999999999996
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.64 E-value=5.7e-07 Score=96.75 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=79.9
Q ss_pred HHHHHhc-CCeEE-EeeccccCCCcccccCCCCCcccCCCCC-ccCCc-eEEEeecCCCc--------cccCCCCCCCeE
Q 006729 403 TFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPNV-DVCLESVPEME--------YDALSSTPRGEV 470 (633)
Q Consensus 403 ~~~~~~~-~~~l~-~~yG~tE~~~~~~~~~~~~~~~~~s~G~-p~~~~-~i~i~~~~~~~--------~~~~~~g~~Gei 470 (633)
..++..+ +.+++ ..|++||+ .+.+...+.. .++..+. .+|+. =.+.++.++.. ...+..|+.+||
T Consensus 320 ~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~--~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~Yel 396 (581)
T 4epl_A 320 PKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRL--SPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEEYEV 396 (581)
T ss_dssp HHHHHHHTTSCEEECCEEETTE-EEEECCCTTS--CTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCEEEE
T ss_pred HHHHHHcCCCccccCceeccce-eeeeecCCCC--CccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCeEEE
Confidence 4444444 67776 99999996 2322222211 1112222 22332 22333311111 235557889999
Q ss_pred EEecCcccccccCChhhhhccccCCeeecCceEEECCC----CcEEEeeeccceeEeCCCeeecchHHHHHHhh------
Q 006729 471 CVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD----GSLKIIDRKKNIFKLSQGEYVAVENLENIYAL------ 540 (633)
Q Consensus 471 ~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~l~i~GR~~d~i~~~~G~~v~p~~iE~~l~~------ 540 (633)
.|+... |.|. |++||+.+++.- ..+.|+||.+++|++ .|+++++.+||++|.+
T Consensus 397 viTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~al~~a~~~l~ 459 (581)
T 4epl_A 397 VITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NIDKNTERDLQLSVESAAKRLS 459 (581)
T ss_dssp EEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SSCCBCHHHHHHHHHHHHHHHH
T ss_pred EEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-eeeECCHHHHHHHHHHHHHhhc
Confidence 997752 4443 999999988632 469999999999998 7999999999999854
Q ss_pred Cc--ccceEEEEcc
Q 006729 541 VS--AIDSVCSSTF 552 (633)
Q Consensus 541 ~p--~V~~~~v~~~ 552 (633)
.. .|.|..+...
T Consensus 460 ~~~~~l~eft~~~d 473 (581)
T 4epl_A 460 EEKIEVIDFSSYID 473 (581)
T ss_dssp TTTCCEEEEEEEEE
T ss_pred ccCCeEEEEEEecC
Confidence 22 3666666553
No 42
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.11 E-value=0.79 Score=47.86 Aligned_cols=107 Identities=13% Similarity=0.028 Sum_probs=81.4
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCeEee
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~--~~~~~~~lA~~~~G~i~v~ 132 (633)
.++.++++... .|.||..+ .+|...+...+..++..+...|+.++|++...++-+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34566655442 67777654 578999988888888878788999999999888753 3345567888899999888
Q ss_pred cCCCCChHHHHHHHhccCceEEEecCCChhhHhh
Q 006729 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (633)
Q Consensus 133 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 166 (633)
++.. ..+.+...+++.++.+++.....+..+.+
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 7664 78888899999999999988776655544
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.06 E-value=0.69 Score=48.20 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=81.1
Q ss_pred CCCCCceeeeeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCeEee
Q 006729 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~--~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~--~~~~~~~lA~~~~G~i~v~ 132 (633)
.++.+|++... .|.||.. ..+|...+...+..++..+...|+.++|++...++.. ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34566655542 6777754 3679999988888778878788999999999888753 3345567888999999887
Q ss_pred cCCCCChHHHHHHHhccCceEEEecCCChhhHhh
Q 006729 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (633)
Q Consensus 133 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 166 (633)
++.. +.+.+...+++.++.+++.....+..+.+
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 7654 78889999999999999988776655544
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.69 E-value=0.92 Score=47.22 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=90.3
Q ss_pred CCCceeeeeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCeEeecC
Q 006729 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLY 134 (633)
Q Consensus 59 ~~~Al~~~~~~d~~~~~~--~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~--~~~~~~~lA~~~~G~i~v~i~ 134 (633)
+.+|++... .|.||.. ..+|...+...+..++..+...++.++|++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455655432 6777754 3679999998888888888888999999999888753 344556788899999988776
Q ss_pred CCCChHHHHHHHhccCceEEEecCCChhhHhhcC-----CCcccCccEEEEecCC
Q 006729 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (633)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~vi~~~~~ 184 (633)
.. ..+.+...+++.++.+++.....+..+.+.. .....+++.++.-...
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 6788889999999999998887666655431 1113577777776654
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=86.68 E-value=5.1 Score=42.29 Aligned_cols=122 Identities=10% Similarity=-0.001 Sum_probs=87.6
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhcCCeEeec
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~-~~~~~lA~~~~G~i~v~i 133 (633)
.|+.+|++... .|.||..+ .+|...+...+..+.. ..++.++|++...+|-... .+..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777777652 56666443 6788888776655443 4588999999888876533 234467888889988776
Q ss_pred CCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCC
Q 006729 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (633)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 184 (633)
+. .+.+.+...+++.++.+++.....+..+.+.......+++.++.-...
T Consensus 236 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 DK-FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp SS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred CC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 54 678899999999999999998887777766554443467777665543
No 46
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=84.19 E-value=8.6 Score=38.60 Aligned_cols=130 Identities=7% Similarity=-0.066 Sum_probs=83.4
Q ss_pred HHHHHHHHHhCCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHH
Q 006729 47 WDVFRMAVERNPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEAC 123 (633)
Q Consensus 47 ~~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~-~~~~~lA~ 123 (633)
.+.++...+.++|.+|++... .|.||..| .+|.+.+...+..++. ..++.++|++...+|-... .+..++..
T Consensus 25 ~~~~~~~~~w~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~ 99 (358)
T 4gs5_A 25 AQAYDFMEKWLGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRG 99 (358)
T ss_dssp HHHHHHHHHHHHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred cchhhHhhccCCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHH
Confidence 333444444556778877652 67777554 6899988776655544 4588999999988876533 23445666
Q ss_pred HhcCCeEeecCCCCChHHHHHHHhccCceEEEecCCChhhHhhcCCC--cccCccEEEEecCC
Q 006729 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK--TTEHLKTIVSFSKV 184 (633)
Q Consensus 124 ~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~vi~~~~~ 184 (633)
+..|+..+..++... ....+++.++.++......+..+.+.... ..++++.++.-...
T Consensus 100 l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~ 159 (358)
T 4gs5_A 100 MELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP 159 (358)
T ss_dssp HHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred HHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence 777777776665432 23457888999988887766666554322 23566777665544
No 47
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=83.97 E-value=2.9 Score=42.20 Aligned_cols=106 Identities=12% Similarity=0.032 Sum_probs=70.4
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHHHHHHHHhcCCeEee
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVP 132 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~--~~~~~~lA~~~~G~i~v~ 132 (633)
.++.+|++... .|.||..+ .+|...+...+..++..+...|+.++|++..+++-+. --+...++++..|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 35666666542 67777554 4688888887776666777789999999999988632 233445555888985555
Q ss_pred cCCCCChH-----------------------HHHHHHhccCceEEEecCCChhhHhh
Q 006729 133 LYDTLGAG-----------------------AVEFIICHSGVSIAFVEEKKIPEMLK 166 (633)
Q Consensus 133 i~~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~~~ 166 (633)
.. ..+. .+...+++.++.+++.....+..+.+
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 43 2333 66668899999999887765555433
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=81.24 E-value=14 Score=39.34 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=85.2
Q ss_pred CCCCCceeeeeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhcCCeEe
Q 006729 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--II-GMEACNALGLHCV 131 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~--~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~--~~-~~lA~~~~G~i~v 131 (633)
.|+.+|++... .|.||.. ..+|.+.+...+..... ..++.++|++...+|-...+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46777777652 5666643 36888888776655444 34788999988888765433 22 4788899999887
Q ss_pred ecCCCCChHHHHHHHhccCceEEEecCCChhhHhhc---CCCcccCccEEEEecCC
Q 006729 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT---FPKTTEHLKTIVSFSKV 184 (633)
Q Consensus 132 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~vi~~~~~ 184 (633)
..+ ....+.+...+++.++.+++.....+..+.+. .....++++.++.-...
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 765 46788899999999999999887766655442 22233677777776554
No 49
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=79.32 E-value=6.9 Score=41.90 Aligned_cols=122 Identities=11% Similarity=-0.036 Sum_probs=82.8
Q ss_pred CCCceeeeeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHhcCCeEeecC
Q 006729 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--IIGMEACNALGLHCVPLY 134 (633)
Q Consensus 59 ~~~Al~~~~~~d~~~~~~--~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~--~~~~lA~~~~G~i~v~i~ 134 (633)
+.+|++... .|.||.. ..+|.+.+...+......+...++.++|++...+|-...+ ...+++.+ .|+..+..+
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 667766542 5666643 4688988877665554433335788999988887765333 33356777 998887775
Q ss_pred CCCChHHHHHHHhccCceEEEecCCChhhHhhcCCC---cccCccEEEEecCC
Q 006729 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK---TTEHLKTIVSFSKV 184 (633)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~---~~~~~~~vi~~~~~ 184 (633)
....+.+...+++.++.+++.....+..+.+.... ...+++.++.-...
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 46788999999999999999988777766553321 22566776665443
No 50
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=74.46 E-value=19 Score=37.89 Aligned_cols=123 Identities=9% Similarity=-0.034 Sum_probs=84.7
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCeEeec
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~-~~~~lA~~~~G~i~v~i 133 (633)
.++.+|++... .|.||..+ .+|...+...+..++. ..++.++|++....|-+..+ +..+++++..|+..+.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35667766542 67777554 6788888766554443 45788999999888866443 34578889999998877
Q ss_pred CCC--CChHHHHHHHhccCceEEEecCCChhhHhhcC---CCcccCccEEEEecCC
Q 006729 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (633)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 184 (633)
+.. ...+.+...+++.++.+++.....+..+.... ....++++.++.....
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 653 46678888999999999998877666655432 2223566666665543
No 51
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=74.02 E-value=16 Score=38.53 Aligned_cols=123 Identities=9% Similarity=-0.016 Sum_probs=82.0
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCeEeec
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~-~~~~lA~~~~G~i~v~i 133 (633)
.++.+|++... .|.||..+ .+|...+...+..... ..++.++|++...+|-+..+ +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 35666766542 66676543 6788888766554433 45889999999988865433 45578889999998887
Q ss_pred CCC--CChHHHHHHHhccCceEEEecCCChhhHhhcCC---CcccCccEEEEecCC
Q 006729 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSKV 184 (633)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~ 184 (633)
+.. ...+.+...+++.++.+++.....+..+..... ...++++.++.-...
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 753 467788899999999999988776655544321 223567777665544
No 52
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=72.89 E-value=9 Score=41.22 Aligned_cols=122 Identities=9% Similarity=0.085 Sum_probs=87.3
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch-hHHHHHHHHHhcCCeEeec
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP-EWIIGMEACNALGLHCVPL 133 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~-~~~~~~lA~~~~G~i~v~i 133 (633)
.|+.+|++... .|.||..| .+|...+..... .....++.++|++..++|-+. -....+++.+..|+..+..
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46777776642 56666443 678877643322 122447889999988888754 3445678888899988776
Q ss_pred CC-CCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCC
Q 006729 134 YD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (633)
Q Consensus 134 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 184 (633)
+. ......+...+++.++.++......+..+.+.......+++.++.-...
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 64 4577889999999999999998888877776665566788888877654
No 53
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=72.26 E-value=15 Score=39.17 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=73.8
Q ss_pred CCCCCceeeeeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhcCCeEe
Q 006729 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII---GMEACNALGLHCV 131 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~--~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~---~~lA~~~~G~i~v 131 (633)
.++.+|++... .|.||.. ..+|...+...+...+. ..++.++|++...+|....+-. .+++.+..|+..+
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35667776642 5666643 36788888776665544 3588999999988876544432 3788888998887
Q ss_pred ecCCCCChHHHHHHHhccCceEEEecCCChhhHhhc
Q 006729 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167 (633)
Q Consensus 132 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 167 (633)
..+. .....+...+++.++.++......+..+.+.
T Consensus 264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 264 MAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred ECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 7654 5778888899999999999887766655443
No 54
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=71.39 E-value=11 Score=41.04 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=87.9
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCeEeec
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~-~~~~lA~~~~G~i~v~i 133 (633)
.|+.+|++... .|.||..| .+|.+.+...+. .....++.++|++....+-+.+. +..+++.+..|+..+..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46778877653 67777554 567777654322 22345889999999988876554 34478888889887776
Q ss_pred C-CCCChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCC
Q 006729 134 Y-DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (633)
Q Consensus 134 ~-~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 185 (633)
+ .....+.+...+++.++.++......+..+.+.......+++.++.-.+.-
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 4 346788999999999999999888777776665555557888888776653
No 55
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=70.88 E-value=42 Score=35.57 Aligned_cols=106 Identities=6% Similarity=-0.109 Sum_probs=78.5
Q ss_pred CCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEc
Q 006729 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (633)
Q Consensus 221 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 300 (633)
++.+|++....+..+. ..-.+|++.+......+...+... ++.++|++...++-+. -.+..+++++..|+..+..+
T Consensus 33 p~~~A~~~~~~~~~~~-~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSE-FPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp TTSEEEEEESSCCCCS-SCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEeCCCccccc-ccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEccC
Confidence 5677777653221111 235789999999998888777543 7889999999988762 23445677799999998886
Q ss_pred C--CHHHHHHHhhhcCCeEEEechHHHHHHHH
Q 006729 301 G--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (633)
Q Consensus 301 ~--~~~~~~~~i~~~k~t~l~~~P~~l~~l~~ 330 (633)
. ..+.+...+++.++++++..+.....+..
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 5 78889999999999999998877665543
No 56
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=70.32 E-value=20 Score=37.88 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=69.3
Q ss_pred CCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHhcCCeEeec
Q 006729 58 PNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII--GMEACNALGLHCVPL 133 (633)
Q Consensus 58 p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~--~~lA~~~~G~i~v~i 133 (633)
|+.+|++... .|.||..+ .+|...+...+..++.. .++.++|++...+|-...+-. .+++++ .|+..+..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 5666666542 66666443 67888887766655444 488999999988876644332 245555 88887766
Q ss_pred CCCCChHHHHHHHhccCceEEEecCCChhhHhh
Q 006729 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (633)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 166 (633)
+ ....+.+...+++.++.++......+..+.+
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 4 5688889999999999999888766655443
No 57
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=70.29 E-value=25 Score=37.70 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=82.0
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCeEee
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVP 132 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~--~~~lA~~~~G~i~v~ 132 (633)
.|+.+|++... .|.||..+ .+|.. +...... ......++.++|++....+-...+- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 35666766542 66777544 56777 4331111 1114468899999888887664433 346788888988877
Q ss_pred cCC-CCChHHHHHHHhccCceEEEecCCChhhHhhcCC--CcccCccEEEEecCC
Q 006729 133 LYD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP--KTTEHLKTIVSFSKV 184 (633)
Q Consensus 133 i~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~vi~~~~~ 184 (633)
.+. ....+.+...+++.++.+++.....+..+.+... ...++++.++.....
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 653 6788899999999999999998877776665421 123667777776654
No 58
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=69.30 E-value=33 Score=36.33 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=76.9
Q ss_pred CCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEE
Q 006729 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (633)
Q Consensus 220 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 299 (633)
.++.+|++.. .+| -.+|++.+......+...+... ++.++|++...++-+. -.+...+.++..|+..+..
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKI--GIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 4567777642 222 4689999999888888777543 7889999999888762 2344566779999998888
Q ss_pred cC--CHHHHHHHhhhcCCeEEEechHHHHHHHH
Q 006729 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (633)
Q Consensus 300 ~~--~~~~~~~~i~~~k~t~l~~~P~~l~~l~~ 330 (633)
+. .++.+...++..++.+++..+.....+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 65 78889999999999999998877666544
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=68.57 E-value=20 Score=38.48 Aligned_cols=123 Identities=9% Similarity=-0.088 Sum_probs=84.2
Q ss_pred CCCCCceeeeeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCeEee
Q 006729 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVP 132 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~--~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~--~~~lA~~~~G~i~v~ 132 (633)
.|+.+|++... .|.||.. ..+|...+...+..++. ..++.++|++...+|-...+- ..+++.+..|+..+.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46777777652 6677744 46899988877665544 458899999998888765543 337888899999888
Q ss_pred cCCCC---ChHHHHHHHhccCceEEEecCCChhhHhhcCC------CcccCccEEEEecCC
Q 006729 133 LYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP------KTTEHLKTIVSFSKV 184 (633)
Q Consensus 133 i~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~vi~~~~~ 184 (633)
.++.. ....+...+++.++.++......+..+.+... ....+++.++.-...
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76532 56778888999999998877665555444321 123566666665543
No 60
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=68.50 E-value=33 Score=35.99 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=76.6
Q ss_pred CCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEE
Q 006729 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (633)
Q Consensus 220 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 299 (633)
.++.+|++. ..-.+|++.+......+...+... ++.++|++...++-+. --+...++++..|+..+..
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRD--GVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEec
Confidence 356777764 125799999999999888777543 7889999999988762 2344566779999999988
Q ss_pred cC--CHHHHHHHhhhcCCeEEEechHHHHHHHH
Q 006729 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (633)
Q Consensus 300 ~~--~~~~~~~~i~~~k~t~l~~~P~~l~~l~~ 330 (633)
+. ..+.+...+++.++.+++..+.....+..
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 66 78889999999999999998887665443
No 61
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=67.70 E-value=20 Score=38.20 Aligned_cols=103 Identities=14% Similarity=0.043 Sum_probs=76.7
Q ss_pred CCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEcC
Q 006729 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301 (633)
Q Consensus 222 ~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~ 301 (633)
+.++++.+..+.++ ..+|++.+......+...+... ++.++|++...++-+. -.+...+.++..|+..+..+.
T Consensus 35 ~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~ 107 (550)
T 3rix_A 35 LVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRY--GLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPAND 107 (550)
T ss_dssp TSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECSSCT-TTHHHHHHHHHHTCEEEECCT
T ss_pred CCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHh--CCCCCCEEEEEcCCcc-cHHHHHHHHHHcCCEEeecCC
Confidence 34454433333333 4689999999888888777543 7889999999888662 234456777899999888765
Q ss_pred --CHHHHHHHhhhcCCeEEEechHHHHHHHHH
Q 006729 302 --DVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331 (633)
Q Consensus 302 --~~~~~~~~i~~~k~t~l~~~P~~l~~l~~~ 331 (633)
....+...++..++++++..+..+..+...
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 108 IYNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp TCCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 788899999999999999998877666543
No 62
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=66.32 E-value=52 Score=34.80 Aligned_cols=100 Identities=8% Similarity=-0.066 Sum_probs=75.0
Q ss_pred CCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEc
Q 006729 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (633)
Q Consensus 221 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 300 (633)
++.+|++....+ ..-.+|++.+......+...+... ++.++|++...++-+. -.+...++++..|+..+..+
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRAL--GVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEecC
Confidence 456666543211 235789999999888888776433 7889999999988662 23445667789999998886
Q ss_pred C--CHHHHHHHhhhcCCeEEEechHHHHHH
Q 006729 301 G--DVKLLLEDIGELKPTIFCAVPRVLDRI 328 (633)
Q Consensus 301 ~--~~~~~~~~i~~~k~t~l~~~P~~l~~l 328 (633)
. ..+.+...+++.++.+++..+.....+
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 6 788899999999999999988766544
No 63
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=64.90 E-value=74 Score=34.27 Aligned_cols=121 Identities=15% Similarity=0.085 Sum_probs=83.4
Q ss_pred CCCCceeeeeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHhcCCeEee
Q 006729 58 PNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII---GMEACNALGLHCVP 132 (633)
Q Consensus 58 p~~~Al~~~~~~d~~~~~~--~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~~---~~lA~~~~G~i~v~ 132 (633)
|+.+|++... .|.||.. ..+|.+.+...+...... .++.++|++...+|-...+-. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 5677776642 5666643 467888887766655443 478899999988875544332 47888888988877
Q ss_pred cCCCCChHHHHHHHhccCceEEEecCCChhhHhhcC-----CCcccCccEEEEecCC
Q 006729 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (633)
Q Consensus 133 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~vi~~~~~ 184 (633)
.+. .....+...+++.++.++......+..+.+.. .....+++.++.-+..
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 654 46778888999999999998877665554321 1134677787776654
No 64
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=61.71 E-value=63 Score=33.71 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=71.3
Q ss_pred CCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEc
Q 006729 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (633)
Q Consensus 221 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 300 (633)
++.+|++.. .+ +..+|++.+......+...+... ++.++|++...++-+. -.+...++++..|+..+..+
T Consensus 16 p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 16 PDHCALAVP---AR----GLRLTHAELRARVEAVAARLHAD--GLRPQQRVAVVAPNSA-DVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp TTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEEEC
T ss_pred CCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCH-HHHHHHHHHHHhCcEEEecC
Confidence 466777642 11 25789999999888888776543 7889999999988763 22445677799999999886
Q ss_pred C--CHHHHHHHhhhcCCeEEEe--chHHHHH
Q 006729 301 G--DVKLLLEDIGELKPTIFCA--VPRVLDR 327 (633)
Q Consensus 301 ~--~~~~~~~~i~~~k~t~l~~--~P~~l~~ 327 (633)
. .++.+...+++.+++.++. .+.....
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 6 7888889999999999988 6555443
No 65
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=60.76 E-value=76 Score=32.66 Aligned_cols=107 Identities=9% Similarity=-0.049 Sum_probs=77.3
Q ss_pred CCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEE
Q 006729 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (633)
Q Consensus 220 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 299 (633)
.++.+|++.........-....+|++.+...+..+...+... +. ++|++...++-+. -.+...+.++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 357788776543211111346799999999999998887543 44 8899988887662 2344567779999998887
Q ss_pred cC-----CHHHHHHHhhhcCCeEEEechHHHHHHHH
Q 006729 300 RG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (633)
Q Consensus 300 ~~-----~~~~~~~~i~~~k~t~l~~~P~~l~~l~~ 330 (633)
+. ..+.+...++..++.+++..+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 53 46788889999999999999887766543
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=59.95 E-value=61 Score=35.38 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=74.3
Q ss_pred CCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhh-hhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEE
Q 006729 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE-SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGF 298 (633)
Q Consensus 220 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~ 298 (633)
.++.+|++.... .+| ....+|.+.+...+..+...+. .. ++.++|++..++|..- -.+...++++..|+..+.
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~--Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSM--GVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTS--CCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEe
Confidence 456788775432 122 2356999999999988887774 32 7889999999998773 234456777899998888
Q ss_pred EcC--CHHHHHHHhhhcCCeEEEechHH
Q 006729 299 WRG--DVKLLLEDIGELKPTIFCAVPRV 324 (633)
Q Consensus 299 ~~~--~~~~~~~~i~~~k~t~l~~~P~~ 324 (633)
... .++.+...+++.++.++++.+..
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 765 78899999999999999987653
No 67
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=58.78 E-value=48 Score=34.75 Aligned_cols=103 Identities=9% Similarity=-0.029 Sum_probs=72.2
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhcCCeEee
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE--WIIGMEACNALGLHCVP 132 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~--~~~~~lA~~~~G~i~v~ 132 (633)
.|+.+|++... .|.||..| .+|...+...+..++..+ ++.++|++...+|.... ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46677776652 67777544 678888888776665544 78899998887775432 23347888899998877
Q ss_pred cCCCCChHHHHHHHhccCceEEEecCCChhhHhh
Q 006729 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (633)
Q Consensus 133 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 166 (633)
.+ ....+.+...+ +.++.+++.....+..+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 45666666677 6789988887776665554
No 68
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=58.19 E-value=53 Score=34.36 Aligned_cols=86 Identities=16% Similarity=0.046 Sum_probs=68.3
Q ss_pred eeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCeE
Q 006729 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (633)
Q Consensus 240 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~k~t~ 317 (633)
-.+|++.+......+...+... ++.++|++...++-+. -.+...+.++..|+..+..+. ..+.+...+++.++.+
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 3589999999988888777443 7889999999888762 234456777999999888866 7888999999999999
Q ss_pred EEechHHHHHH
Q 006729 318 FCAVPRVLDRI 328 (633)
Q Consensus 318 l~~~P~~l~~l 328 (633)
++..+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99988765443
No 69
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=58.11 E-value=74 Score=33.85 Aligned_cols=94 Identities=3% Similarity=-0.070 Sum_probs=71.5
Q ss_pred CCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEc
Q 006729 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (633)
Q Consensus 221 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 300 (633)
++.+|++.. .-.+|++.+......+...+... ++.++|++...++-+. -.+...++++..|+..+..+
T Consensus 53 p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 53 PNNVAIVCE---------NEQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPID 120 (563)
T ss_dssp TTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeC
Confidence 566776631 23689999998888887766433 7889999999888762 23345667789999998886
Q ss_pred C--CHHHHHHHhhhcCCeEEEechHHHH
Q 006729 301 G--DVKLLLEDIGELKPTIFCAVPRVLD 326 (633)
Q Consensus 301 ~--~~~~~~~~i~~~k~t~l~~~P~~l~ 326 (633)
. ..+.+...++..++.+++..+....
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 6 7888899999999999999876543
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=56.26 E-value=71 Score=34.17 Aligned_cols=97 Identities=7% Similarity=-0.038 Sum_probs=74.0
Q ss_pred CCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEE
Q 006729 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (633)
Q Consensus 220 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 299 (633)
.++.+|++..... | ....+|.+.+......+...+... ++.++|++...++-+. --+...++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~--Gv~~Gd~V~l~~~~~~-e~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKH--GIGKGDYVMLTLKSRY-DFWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECTTCT-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCCH-HHHHHHHHHHhCCEEEEeC
Confidence 4677888765431 2 246789999999888888777543 7889999999988763 2334566778999998887
Q ss_pred cC--CHHHHHHHhhhcCCeEEEechH
Q 006729 300 RG--DVKLLLEDIGELKPTIFCAVPR 323 (633)
Q Consensus 300 ~~--~~~~~~~~i~~~k~t~l~~~P~ 323 (633)
+. .++.+...+++.++.+++..+.
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecc
Confidence 65 7888999999999999988654
No 71
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=55.06 E-value=83 Score=34.20 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=72.7
Q ss_pred CCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEc
Q 006729 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (633)
Q Consensus 221 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 300 (633)
++.+|++.... .+| ..-.+|++.+......+.+.+... ++.++|++..++|.+- -.+...++++..|+..+..+
T Consensus 90 pd~~Al~~~~~-~~~--~~~~lTY~eL~~~v~~lA~~L~~~--Gv~~Gd~V~i~~~~~~-e~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 90 GDRTAIIWEGD-DTS--QSKHISYRELHRDVCRFANTLLDL--GIKKGDVVAIYMPMVP-EAAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp TTSEEEEEECS-STT--CEEEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEECC
T ss_pred CCceEEEEEcC-CCC--ceeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHcCcEEEecC
Confidence 56677775422 222 235799999999888888776543 7889999999998773 22445677788999988876
Q ss_pred C--CHHHHHHHhhhcCCeEEEechH
Q 006729 301 G--DVKLLLEDIGELKPTIFCAVPR 323 (633)
Q Consensus 301 ~--~~~~~~~~i~~~k~t~l~~~P~ 323 (633)
. .++.+...+++.++.+++....
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 5 7889999999999999988654
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=54.64 E-value=50 Score=34.75 Aligned_cols=97 Identities=5% Similarity=-0.129 Sum_probs=73.8
Q ss_pred CCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEc
Q 006729 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (633)
Q Consensus 221 ~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 300 (633)
++.+|++.. +..+|++.+......+...+... ++.++|++...++-+. -.+...+.++..|+..+..+
T Consensus 37 p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~vpl~ 104 (529)
T 2v7b_A 37 AGKTAYIDD---------TGSTTYGELEERARRFASALRTL--GVHPEERILLVMLDTV-ALPVAFLGALYAGVVPVVAN 104 (529)
T ss_dssp TTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSST-HHHHHHHHHHHHTCEEEECC
T ss_pred CCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHcCceEEecC
Confidence 466776532 14689999999888888776433 7889999999888763 23445677789999988876
Q ss_pred C--CHHHHHHHhhhcCCeEEEechHHHHHHH
Q 006729 301 G--DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (633)
Q Consensus 301 ~--~~~~~~~~i~~~k~t~l~~~P~~l~~l~ 329 (633)
. .++.+...+++.++.+++..+.....+.
T Consensus 105 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 105 TLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred cccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 5 7889999999999999999887665543
No 73
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=53.14 E-value=20 Score=26.82 Aligned_cols=59 Identities=12% Similarity=-0.010 Sum_probs=42.1
Q ss_pred hHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHHHhhhhhhhheeccC
Q 006729 532 ENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLLHILPTVLFLCILPV 608 (633)
Q Consensus 532 ~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~p~~~~~~~iP~ 608 (633)
.++++.|.++|.|.+|..+.-+....... .+ .+.+++.+++.+.+..+|.+...+....
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~~d~l~~v-~~-----------------~d~~~l~~~~~~~l~~~~gV~~~~t~iv 74 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGVYDIVVKV-EA-----------------DSMDKLKDFVTNTIRKLPKVRSTLTMII 74 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSSCSEEEEE-EC-----------------SSHHHHHHHHHHTGGGSTTEEEEEEEEC
T ss_pred HHHHHHHhCCCCeEEEEEEeccCCEEEEE-EE-----------------CCHHHHHHHHHHHhcCCCCEeEEEEEEE
Confidence 68899999999999999887665444333 22 3446899999888888887655544443
No 74
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=51.87 E-value=1.3e+02 Score=27.43 Aligned_cols=54 Identities=11% Similarity=-0.069 Sum_probs=37.1
Q ss_pred CCcEEEEeCchH-HHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCeEEEe
Q 006729 267 SEDVYVSYLPLA-HIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCA 320 (633)
Q Consensus 267 ~~d~~l~~~pl~-~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~k~t~l~~ 320 (633)
.+.+++...+-. |..|... ....-..|-.++.... .++.+++.+.+++++++..
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344455444433 6677665 4445667777766533 8999999999999998777
No 75
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=51.70 E-value=28 Score=41.62 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=87.0
Q ss_pred CCCCCceeeeeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCeEeec
Q 006729 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI-IGMEACNALGLHCVPL 133 (633)
Q Consensus 57 ~p~~~Al~~~~~~d~~~~~~~--~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~-~~~lA~~~~G~i~v~i 133 (633)
.|+.+|++... .|.||..| .+|.+.+... .......++.++|++..+.+-+.+.. .-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 47778877653 67777554 5777776532 11223458889999988887766554 3478888889988877
Q ss_pred CCC--CChHHHHHHHhccCceEEEecCCChhhHhhcCCCcccCccEEEEecCCC
Q 006729 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (633)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 185 (633)
++. ...+.+...+++.++.++......+..+.+.......+++.++.-++.-
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 753 5678899999999999999888777766654433446788888776543
No 76
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=48.78 E-value=59 Score=32.02 Aligned_cols=64 Identities=5% Similarity=-0.086 Sum_probs=48.2
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCC
Q 006729 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (633)
Q Consensus 96 ~~~g-i~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (633)
.+.| +++|+.|.+....+-.-..+.++|...|.-++.+-|..........++..++++++++..
T Consensus 63 ~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 63 EKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445 488888756666677778888888888998777666655556667789999999998754
No 77
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=48.31 E-value=89 Score=35.91 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=75.8
Q ss_pred CCCCeEEEEeccCCCCCcceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEE
Q 006729 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (633)
Q Consensus 220 ~~~~~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 299 (633)
.++.+|++... +| -.+|++.+......+...+... ++.++|++..+++-+. -.+...+.++..|+..+..
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKL--GVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHc--CCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 46778876422 22 4689999999888888776443 7889999999988762 3344567779999999988
Q ss_pred cC--CHHHHHHHhhhcCCeEEEechHHHHHH
Q 006729 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRI 328 (633)
Q Consensus 300 ~~--~~~~~~~~i~~~k~t~l~~~P~~l~~l 328 (633)
+. .++.+...+++.++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 66 788899999999999999987765444
No 78
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=46.51 E-value=22 Score=26.83 Aligned_cols=55 Identities=4% Similarity=-0.034 Sum_probs=39.4
Q ss_pred chHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHHHhhhhhhhh
Q 006729 531 VENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLLHILPTVLFL 603 (633)
Q Consensus 531 p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~p~~~~~ 603 (633)
..++++.|.++|.|.+|..+.-+..+.... .+ .+.+++.+++.+.+..+|.+...
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D~ll~v-~~-----------------~d~~~l~~~i~~~l~~~~gV~~~ 69 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYDLIVKV-ET-----------------DTLKDLDQFITEKIRKMPEIQMT 69 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCSEEEEE-EE-----------------SSHHHHHHHHHTTGGGCTTEEEE
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCCEEEEE-EE-----------------CCHHHHHHHHHHHhccCCCEeEE
Confidence 368999999999999999887665544444 33 23468888887777777765433
No 79
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.09 E-value=71 Score=31.60 Aligned_cols=70 Identities=9% Similarity=-0.066 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCC
Q 006729 90 KVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (633)
Q Consensus 90 ~~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (633)
.+.....+.-+++|.+..+....+-.-+.+.++|...|.-+..+-|...+......++..++++++++..
T Consensus 73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444444434678887777887888889999999999999888777766667778889999999998753
No 80
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=40.40 E-value=89 Score=32.65 Aligned_cols=81 Identities=12% Similarity=0.027 Sum_probs=63.1
Q ss_pred eeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCeE
Q 006729 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (633)
Q Consensus 240 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~k~t~ 317 (633)
-.+|++.+......+...+... ++.++|++...++-+. -.+...++++..|+..+..+. .++.+...++..++++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~--g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSL--ALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 3589999999888888776443 6788999888877652 234456777899999888765 7888999999999999
Q ss_pred EEechH
Q 006729 318 FCAVPR 323 (633)
Q Consensus 318 l~~~P~ 323 (633)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 81
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=38.65 E-value=1.7e+02 Score=30.86 Aligned_cols=87 Identities=9% Similarity=-0.132 Sum_probs=67.9
Q ss_pred eeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEEEEcC--C-------HHHHHHHh
Q 006729 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--D-------VKLLLEDI 310 (633)
Q Consensus 240 v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~-------~~~~~~~i 310 (633)
-.+|++.+......+...+... ++.++|++...++-+. -.+...++++..|+..+..+. . ...+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 5789999999998888777543 7889999999988763 234456777999999888754 2 57788899
Q ss_pred hhcCCeEEEechHHHHHHH
Q 006729 311 GELKPTIFCAVPRVLDRIY 329 (633)
Q Consensus 311 ~~~k~t~l~~~P~~l~~l~ 329 (633)
+..++..++........+.
T Consensus 125 ~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHCCSEEEECGGGHHHHH
T ss_pred HhcCCCEEEecHHHHHHHH
Confidence 9999999999887665543
No 82
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=38.33 E-value=2.4e+02 Score=29.67 Aligned_cols=99 Identities=9% Similarity=-0.074 Sum_probs=70.2
Q ss_pred CCCCeEEEEeccCCCCCc--ceeeechHHHHHHHHHHHHhhhhhccCCCCCcEEEEeCchHHHHHHHHHHHHHHcCcEEE
Q 006729 220 KKNDICTIMYTSGTTGDP--KGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIG 297 (633)
Q Consensus 220 ~~~~~a~i~~TSGTTG~P--K~v~~th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~l~~G~~~~ 297 (633)
.++.+|++...+ ..+.. ..-.+|++.+......+...+... +. ++|++...++-+. -.+...+.++..|+..+
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHA--SL-HGRAIAVSLDRSL-IAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHT--TC-SSCEEEEECCSCH-HHHHHHHHHHHTTCEEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEeCCCH-HHHHHHHHHHHhCCEEE
Confidence 466777765432 22222 235789999999998888777443 45 6899988887763 22345677799999988
Q ss_pred EEcC--CHHHHHHHhhhcCCeEEEechH
Q 006729 298 FWRG--DVKLLLEDIGELKPTIFCAVPR 323 (633)
Q Consensus 298 ~~~~--~~~~~~~~i~~~k~t~l~~~P~ 323 (633)
..+. ..+.+...+++.++.+++....
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 8866 7888888999999998887543
No 83
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=35.87 E-value=74 Score=31.23 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=52.5
Q ss_pred EeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEE
Q 006729 79 KTYKEVYDLVIKVV---NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (633)
Q Consensus 79 ~Ty~eL~~~~~~~A---~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii 155 (633)
+++.+......... ..|...++++|++|+|....+.-.+++++|....|+.++.++.+ .+. ..+++..++..++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 56666554443332 34556699999999999987788888888887778877666542 333 4556778888776
Q ss_pred ec
Q 006729 156 VE 157 (633)
Q Consensus 156 ~~ 157 (633)
-.
T Consensus 214 ~~ 215 (348)
T 4eez_A 214 NS 215 (348)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 84
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=27.23 E-value=29 Score=26.65 Aligned_cols=55 Identities=18% Similarity=-0.050 Sum_probs=38.4
Q ss_pred chHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHHHhhhhhhhh
Q 006729 531 VENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLLHILPTVLFL 603 (633)
Q Consensus 531 p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~p~~~~~ 603 (633)
..++++.|.++|.|.+|..+.-+....... .+ .+.+++.+++.+++..+|.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D~ll~v-~~-----------------~d~~~l~~~l~~~l~~~~gV~~~ 69 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYDLVALV-RL-----------------KDVEELDDVVTQGILSLEGVERT 69 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSSEEEEE-EE-----------------SSGGGHHHHCCCCCTTSTTEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCEEEEE-EE-----------------CCHHHHHHHHHHhcccCCCEeEE
Confidence 468899999999999999887666544444 33 23457888886666666654333
No 85
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=26.38 E-value=4e+02 Score=26.67 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=11.3
Q ss_pred HhccCceEEEecCCChhhHhhcC
Q 006729 146 ICHSGVSIAFVEEKKIPEMLKTF 168 (633)
Q Consensus 146 l~~~~~~~ii~~~~~~~~~~~~~ 168 (633)
+...+++++.++....+.+.+.+
T Consensus 141 ~~~~g~~~~~v~~~d~~~l~~ai 163 (414)
T 3ndn_A 141 LPRWGVQTVFVDGDDLSQWERAL 163 (414)
T ss_dssp HHHTTCEEEEECTTCHHHHHHHT
T ss_pred HHHcCcEEEEeCCCCHHHHHHhc
Confidence 34455555555544444444433
No 86
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=26.13 E-value=1.7e+02 Score=28.59 Aligned_cols=78 Identities=9% Similarity=-0.077 Sum_probs=50.7
Q ss_pred EeHHHHHHHHHH---HHHHHHHc--CCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceE
Q 006729 79 KTYKEVYDLVIK---VVNAIRTC--GVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (633)
Q Consensus 79 ~Ty~eL~~~~~~---~A~~L~~~--gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ 153 (633)
+++.+....... ....|.+. ++++|++|+|.....+-.+++.+|-..-|+.++.++. +.+.+ .++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 455555433222 22344553 7899999999988678888888887765666666654 33333 4567788888
Q ss_pred EEecCC
Q 006729 154 AFVEEK 159 (633)
Q Consensus 154 ii~~~~ 159 (633)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 776544
No 87
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=25.46 E-value=1.7e+02 Score=29.80 Aligned_cols=63 Identities=11% Similarity=-0.010 Sum_probs=36.2
Q ss_pred EEEeCCchhHHHH-HHHHHhcCCeEeecCCCCChH--HHHHHHhccCceEEEecCCChhhHhhcCC
Q 006729 107 GIYGVNCPEWIIG-MEACNALGLHCVPLYDTLGAG--AVEFIICHSGVSIAFVEEKKIPEMLKTFP 169 (633)
Q Consensus 107 al~~~n~~~~~~~-~lA~~~~G~i~v~i~~~~~~~--~l~~~l~~~~~~~ii~~~~~~~~~~~~~~ 169 (633)
++++.++.+.+.+ +.++...|-.++..++.+..- .+...+...+++++.++....+.+.+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~ 165 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACD 165 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhC
Confidence 4555566554443 344555565555555555332 23336677788888887666666665554
No 88
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=25.11 E-value=93 Score=29.55 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCCCceeeeeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 006729 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (633)
Q Consensus 48 ~~l~~~a~~~p~~~Al~~~~~~d~~~~~~~~~Ty~eL~~~~~~~A~~L~~~gi~~gd~Val~~~n~~~~~ 117 (633)
.++++..+..|+...+... |...-++...|..++.+++.+.+..|.+.|. + ..++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~---~-~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI---K-MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC---S-EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCCCccHH
Confidence 4667777889998888877 7777777789999999999999999998765 3 444444666653
No 89
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=24.60 E-value=1.8e+02 Score=28.67 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=44.2
Q ss_pred HHHHH--cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecC
Q 006729 93 NAIRT--CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (633)
Q Consensus 93 ~~L~~--~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 158 (633)
..|.+ .++++|++|+|.....+-.+++.+|-...|+.++.+.. +.+.+. .+++.+++.++-..
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEecc
Confidence 34555 78999999999998778888888877654876555554 344443 45678888777543
No 90
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=24.11 E-value=1.8e+02 Score=28.33 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=49.4
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEE
Q 006729 79 KTYKEVYDLVIK---VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (633)
Q Consensus 79 ~Ty~eL~~~~~~---~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii 155 (633)
+++.+....... ..+.|...++++|++|+|....++-.+++.+|-. .|+-++.+.. +.+.++ .+++.+++.++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKLN-LARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHHH-HHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHHH-HHHHcCCCEEE
Confidence 666665432222 1244556689999999999876778888777764 5887666544 344443 56778888776
Q ss_pred ec
Q 006729 156 VE 157 (633)
Q Consensus 156 ~~ 157 (633)
-.
T Consensus 216 ~~ 217 (340)
T 3s2e_A 216 NA 217 (340)
T ss_dssp ET
T ss_pred eC
Confidence 54
No 91
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=24.11 E-value=1.5e+02 Score=29.15 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=48.3
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEE
Q 006729 79 KTYKEVYDLVIK---VVNAIRTCGVE-ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (633)
Q Consensus 79 ~Ty~eL~~~~~~---~A~~L~~~gi~-~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~i 154 (633)
+++.+....... .-..|.+.+++ +|++|+|.....+..+++.+|-. .|+.++.+..+ .+.+....++.+++.+
T Consensus 153 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 153 MAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDY 229 (357)
T ss_dssp CCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCcee
Confidence 666664322111 12345567888 99999999876678888777765 57765555543 3445555557788766
Q ss_pred EecC
Q 006729 155 FVEE 158 (633)
Q Consensus 155 i~~~ 158 (633)
+...
T Consensus 230 i~~~ 233 (357)
T 2cf5_A 230 VIGS 233 (357)
T ss_dssp EETT
T ss_pred eccc
Confidence 6443
No 92
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=24.03 E-value=2.9e+02 Score=26.52 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=43.3
Q ss_pred HHcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCC
Q 006729 96 RTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (633)
Q Consensus 96 ~~~gi-~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (633)
.+.|. ++|+.|.. ...+-.-..+.++|...|.-+..+-|......-...++..++++++++..
T Consensus 59 ~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 59 EQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 34443 66766555 55566666677778899998777655544455666778899999998753
No 93
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=23.34 E-value=1.7e+02 Score=28.64 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=47.5
Q ss_pred EeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEE
Q 006729 79 KTYKEVYDLVIKV---VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (633)
Q Consensus 79 ~Ty~eL~~~~~~~---A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii 155 (633)
+++.+........ -..|.+.++++|++|+|.....+-.+++.+|- ..|+-++.+..+ .+.+. .+++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 5666654322221 24556679999999999987667777777775 468876665543 23333 44668888877
No 94
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=23.25 E-value=2.9e+02 Score=26.64 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=44.9
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCC
Q 006729 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (633)
Q Consensus 96 ~~~g-i~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (633)
.+.| +++|....+....+-.-..+.++|...|.-++.+-|......-...++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3445 456654445566677777778888899998777655544555667788899999998753
No 95
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=23.10 E-value=2.7e+02 Score=28.42 Aligned_cols=63 Identities=6% Similarity=-0.062 Sum_probs=47.6
Q ss_pred HHcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecC
Q 006729 96 RTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (633)
Q Consensus 96 ~~~gi-~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 158 (633)
.+.|. ++|....+....+-.-..+.++|...|.-++.+-|..........++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34554 6776666666667777888888999999887766665566667788999999999874
No 96
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.88 E-value=1.6e+02 Score=25.57 Aligned_cols=60 Identities=20% Similarity=0.089 Sum_probs=40.7
Q ss_pred hHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHHHhhhhhhhheeccCCC
Q 006729 532 ENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLLHILPTVLFLCILPVSP 610 (633)
Q Consensus 532 ~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~p~~~~~~~iP~~~ 610 (633)
.++.+.|.++|.|.+|..+.-+...+. .+.+ .+.+++.+++ +.+..+|.+..++......
T Consensus 101 ~~v~~~l~~~peV~~~~~vtG~~d~l~-~v~~-----------------~d~~~l~~~l-~~l~~~~gV~~~~t~ivl~ 160 (171)
T 2e1c_A 101 SEVASNLAKYPEIVEVYETTGDYDMVV-KIRT-----------------KNSEELNNFL-DLIGSIPGVEGTHTMIVLK 160 (171)
T ss_dssp HHHHHHHHTSTTEEEEEECSSSSSEEE-EEEE-----------------SSHHHHHHHH-HHHHHSTTEEEEEEEECSC
T ss_pred HHHHHHHhcCcCeEEEEEeeCCCCEEE-EEEE-----------------CCHHHHHHHH-HHHhcCCCcceEEEEEEEE
Confidence 578899999999999998754443333 3333 3346888988 8888888765555444433
No 97
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.39 E-value=1.9e+02 Score=24.67 Aligned_cols=60 Identities=7% Similarity=0.027 Sum_probs=41.0
Q ss_pred chHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHHHhhhhhhhheeccCC
Q 006729 531 VENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLLHILPTVLFLCILPVS 609 (633)
Q Consensus 531 p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~p~~~~~~~iP~~ 609 (633)
..++.+.|.++|.|.+|..+.-...+.... .+ .+.+++.+++.+.+..+| +...+.....
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~~D~~l~v-~~-----------------~d~~~l~~~l~~~l~~~~-V~~~~T~ivl 138 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGDVDYLLRV-VV-----------------PDIAAYDAFYKRMIAKIE-IRDVSSAFAM 138 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSSCSEEEEE-EE-----------------SSHHHHHHHHHHHHHHCC-CSEEEEEECS
T ss_pred HHHHHHHHhcCCCEEEeeecCCCCCEEEEE-EE-----------------CCHHHHHHHHHHHhhcCC-eeEEEEEEEE
Confidence 457889999999999999876544333333 33 334689999988877777 6555544433
No 98
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=21.92 E-value=1.4e+02 Score=29.30 Aligned_cols=75 Identities=8% Similarity=-0.036 Sum_probs=48.0
Q ss_pred EeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCC-eEeecCCCCChHHHHHHHhccCceEE
Q 006729 79 KTYKEVYDLVIKV---VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGL-HCVPLYDTLGAGAVEFIICHSGVSIA 154 (633)
Q Consensus 79 ~Ty~eL~~~~~~~---A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~-i~v~i~~~~~~~~l~~~l~~~~~~~i 154 (633)
+++.+.......+ .+.+...++++|++|+|...-.+..+++.+|- ..|+ .++.++. +.+ ...++++.+++.+
T Consensus 140 ~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~--~~~-~~~~~~~lGa~~v 215 (352)
T 3fpc_A 140 IPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGS--RKH-CCDIALEYGATDI 215 (352)
T ss_dssp SCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECC--CHH-HHHHHHHHTCCEE
T ss_pred CCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECC--CHH-HHHHHHHhCCceE
Confidence 6666654322221 23456779999999999987667777777775 5687 4555544 233 3356677888877
Q ss_pred Eec
Q 006729 155 FVE 157 (633)
Q Consensus 155 i~~ 157 (633)
+..
T Consensus 216 i~~ 218 (352)
T 3fpc_A 216 INY 218 (352)
T ss_dssp ECG
T ss_pred EcC
Confidence 643
No 99
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=21.72 E-value=3.2e+02 Score=26.40 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=44.7
Q ss_pred HcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCC
Q 006729 97 TCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (633)
Q Consensus 97 ~~g-i~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (633)
+.| +++|+.|... ..+-.-..+.++|...|.-++.+-|..........++..++++++++..
T Consensus 66 ~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 66 ADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344 4677766554 4566667777888888988777666555556667889999999999864
No 100
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=21.68 E-value=3.1e+02 Score=26.21 Aligned_cols=62 Identities=10% Similarity=-0.044 Sum_probs=42.4
Q ss_pred HcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEecCC
Q 006729 97 TCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (633)
Q Consensus 97 ~~gi-~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (633)
+.|. ++|+.|.. ...+-.-..+.++|...|.-++.+-|......-...++..++++++++..
T Consensus 58 ~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 58 KAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3443 66665544 55566666777788889988776555444455566778899999998764
No 101
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=21.17 E-value=1.8e+02 Score=27.97 Aligned_cols=72 Identities=10% Similarity=0.099 Sum_probs=48.4
Q ss_pred EeHHHHHHHHHHHHH---HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEE
Q 006729 79 KTYKEVYDLVIKVVN---AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (633)
Q Consensus 79 ~Ty~eL~~~~~~~A~---~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii 155 (633)
+++.+.......++. .|...++++|++|+|.....+..+++.+|- ..|+-++.+. + .+.+ ..+++.+++.++
T Consensus 116 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~-~--~~~~-~~~~~lGa~~v~ 190 (315)
T 3goh_A 116 LSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS-A--SLSQ-ALAAKRGVRHLY 190 (315)
T ss_dssp SCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC-S--SCCH-HHHHHHTEEEEE
T ss_pred CCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE-C--hhhH-HHHHHcCCCEEE
Confidence 678877544444333 334568999999999998667777777775 4588666665 2 3333 334668888887
No 102
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.12 E-value=1.9e+02 Score=24.30 Aligned_cols=61 Identities=18% Similarity=0.064 Sum_probs=40.9
Q ss_pred chHHHHHHhhCcccceEEEEccCccceEEEEEEhHHHHhhccCCCCcccCCCchhHHHHHHHHHHhhhhhhhheeccCCC
Q 006729 531 VENLENIYALVSAIDSVCSSTFCLLYVCAQLVIYKLMVSRCMCLSPKLACPFDVEVCCFLLSLLHILPTVLFLCILPVSP 610 (633)
Q Consensus 531 p~~iE~~l~~~p~V~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~p~~~~~~~iP~~~ 610 (633)
..++.+.|.++|.|.+|..+.-+... ...+.+ .+.+++.+++ +.+..+|.+...+......
T Consensus 80 ~~~~~~~l~~~p~V~~~~~~tG~~d~-~~~v~~-----------------~d~~~l~~~~-~~l~~~~gV~~~~t~ivl~ 140 (151)
T 2cyy_A 80 YSEVASNLAKYPEIVEVYETTGDYDM-VVKIRT-----------------KNSEELNNFL-DLIGSIPGVEGTHTMIVLK 140 (151)
T ss_dssp HHHHHHHHHTCTTEEEEEECSSSSSE-EEEEEE-----------------SSHHHHHHHH-HHHHTSTTEEEEEEEECCC
T ss_pred HHHHHHHHhcCCCeeEeeEecCCCCE-EEEEEE-----------------CCHHHHHHHH-HHHhCCCCEeEEEEEEEEE
Confidence 35788999999999999987654333 333333 3346888888 8787777765555444443
No 103
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=20.74 E-value=2e+02 Score=28.41 Aligned_cols=63 Identities=14% Similarity=-0.039 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCC-----CChHHHHHHHhccC--ceEEEe
Q 006729 91 VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT-----LGAGAVEFIICHSG--VSIAFV 156 (633)
Q Consensus 91 ~A~~L~~~gi~~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~-----~~~~~l~~~l~~~~--~~~ii~ 156 (633)
+...|...++++||.|.+..+.... ..-++...|+.++.++.+ ...++++..+..-+ .++|+.
T Consensus 66 l~~al~~l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 66 LMAAIQLKKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHHHHSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 3344555578899988876654443 334566788887766533 36677887774334 666663
No 104
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=20.60 E-value=2.2e+02 Score=27.43 Aligned_cols=74 Identities=9% Similarity=-0.011 Sum_probs=48.9
Q ss_pred EeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEe-CCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEE
Q 006729 79 KTYKEVYDLVIKV---VNAIRTCGVEERGKCGIYG-VNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (633)
Q Consensus 79 ~Ty~eL~~~~~~~---A~~L~~~gi~~gd~Val~~-~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~i 154 (633)
+++.+........ ...|...++++|++|+|.. .-.+..+++.+|- ..|+.++.+. +.++ ...+++.++..+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 5677665433221 2344567999999999996 5667777777775 5688765553 3444 556777888876
Q ss_pred Eec
Q 006729 155 FVE 157 (633)
Q Consensus 155 i~~ 157 (633)
+-.
T Consensus 201 i~~ 203 (321)
T 3tqh_A 201 INY 203 (321)
T ss_dssp EET
T ss_pred EeC
Confidence 643
No 105
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=20.23 E-value=2.6e+02 Score=27.56 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHhcCCeEeecCCCCChHHHHHHHhccCceEEEec
Q 006729 93 NAIRTCGVE-ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE 157 (633)
Q Consensus 93 ~~L~~~gi~-~gd~Val~~~n~~~~~~~~lA~~~~G~i~v~i~~~~~~~~l~~~l~~~~~~~ii~~ 157 (633)
..|.+.+++ +|++|+|.....+...++.+|- ..|+-++.+.. +.+.+....+..+++.++-.
T Consensus 177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~ 239 (366)
T 1yqd_A 177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVS 239 (366)
T ss_dssp HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEET
T ss_pred HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEec
Confidence 345567888 9999999987667777777775 46876555544 34555555557788766543
No 106
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=20.15 E-value=2e+02 Score=28.22 Aligned_cols=78 Identities=10% Similarity=-0.053 Sum_probs=48.9
Q ss_pred EeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEeC-CchhHHHHHHHHHhcCCeE-eecCCCCChHHHHHHHhccCce
Q 006729 79 KTYKEVYDLV--IKVV-NAIRT-CGVEERGKCGIYGV-NCPEWIIGMEACNALGLHC-VPLYDTLGAGAVEFIICHSGVS 152 (633)
Q Consensus 79 ~Ty~eL~~~~--~~~A-~~L~~-~gi~~gd~Val~~~-n~~~~~~~~lA~~~~G~i~-v~i~~~~~~~~l~~~l~~~~~~ 152 (633)
+++.+..... --.| ..|.+ .++++|++|+|... ..+..+++.+|-. .|+-+ +.+...-..++....++..+++
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5666654321 1112 23444 48999999999997 5677777777764 57744 3444443444555667788988
Q ss_pred EEEec
Q 006729 153 IAFVE 157 (633)
Q Consensus 153 ~ii~~ 157 (633)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 87743
Done!