Query 006731
Match_columns 633
No_of_seqs 607 out of 3560
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 13:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 2.5E-70 5.3E-75 561.9 27.4 308 258-618 21-332 (346)
2 KOG1500 Protein arginine N-met 100.0 1.7E-51 3.7E-56 413.2 19.6 287 258-581 138-433 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 7.1E-43 1.5E-47 381.4 22.2 275 271-614 152-447 (448)
4 KOG2482 Predicted C2H2-type Zn 100.0 1.3E-31 2.9E-36 268.7 4.8 153 4-157 236-392 (423)
5 KOG0822 Protein kinase inhibit 99.9 1.3E-26 2.8E-31 246.3 16.1 284 275-627 338-637 (649)
6 PTZ00357 methyltransferase; Pr 99.9 4.1E-21 9E-26 208.8 19.9 306 277-617 647-1040(1072)
7 KOG1501 Arginine N-methyltrans 99.9 1.4E-21 3.1E-26 203.4 11.9 255 273-565 36-320 (636)
8 COG2227 UbiG 2-polyprenyl-3-me 99.7 8.3E-18 1.8E-22 166.3 10.4 152 248-425 10-164 (243)
9 PLN02396 hexaprenyldihydroxybe 99.7 1.8E-16 3.9E-21 167.3 16.4 152 249-423 75-236 (322)
10 PF12847 Methyltransf_18: Meth 99.7 8.2E-16 1.8E-20 137.0 13.1 107 297-422 1-111 (112)
11 COG2226 UbiE Methylase involve 99.7 7.1E-16 1.5E-20 155.0 13.4 114 285-419 39-153 (238)
12 KOG1270 Methyltransferases [Co 99.7 4E-16 8.7E-21 155.2 10.7 154 249-423 33-196 (282)
13 COG4076 Predicted RNA methylas 99.6 6.9E-15 1.5E-19 138.8 11.5 138 270-433 9-146 (252)
14 PF01209 Ubie_methyltran: ubiE 99.6 4.6E-15 1E-19 150.1 8.8 111 288-419 38-150 (233)
15 PRK11207 tellurite resistance 99.5 1E-13 2.3E-18 136.9 14.1 104 295-419 28-131 (197)
16 PF06325 PrmA: Ribosomal prote 99.5 4.7E-14 1E-18 146.8 10.5 111 282-421 148-258 (295)
17 TIGR02752 MenG_heptapren 2-hep 99.5 2.5E-13 5.4E-18 137.1 14.9 118 282-420 30-149 (231)
18 PLN02233 ubiquinone biosynthes 99.5 2.3E-13 5E-18 140.3 14.6 117 285-421 61-181 (261)
19 PF08241 Methyltransf_11: Meth 99.5 2.2E-13 4.7E-18 116.7 10.6 95 302-420 1-95 (95)
20 KOG1540 Ubiquinone biosynthesi 99.5 4.6E-13 1E-17 132.6 14.2 141 285-450 88-236 (296)
21 TIGR00477 tehB tellurite resis 99.5 2.3E-13 5.1E-18 134.2 12.3 104 294-419 27-130 (195)
22 PRK00107 gidB 16S rRNA methylt 99.5 3.3E-13 7.1E-18 132.1 13.1 100 296-421 44-144 (187)
23 PF03848 TehB: Tellurite resis 99.5 2.8E-13 6E-18 132.2 12.2 106 293-420 26-131 (192)
24 PF13847 Methyltransf_31: Meth 99.5 4.2E-13 9E-18 126.8 12.6 108 296-423 2-111 (152)
25 COG2264 PrmA Ribosomal protein 99.5 2.6E-13 5.7E-18 140.0 11.5 113 283-421 150-262 (300)
26 PF02353 CMAS: Mycolic acid cy 99.5 8.3E-13 1.8E-17 136.7 14.7 117 286-424 51-168 (273)
27 PLN02244 tocopherol O-methyltr 99.5 7.4E-13 1.6E-17 141.7 14.6 106 296-422 117-223 (340)
28 PRK15068 tRNA mo(5)U34 methylt 99.5 5.7E-13 1.2E-17 141.3 13.5 115 287-422 112-226 (322)
29 TIGR00452 methyltransferase, p 99.4 7.4E-13 1.6E-17 139.3 14.0 116 286-422 110-225 (314)
30 COG2230 Cfa Cyclopropane fatty 99.4 5.4E-13 1.2E-17 136.6 12.5 115 286-422 61-176 (283)
31 TIGR00138 gidB 16S rRNA methyl 99.4 9E-13 1.9E-17 128.5 12.6 100 296-421 41-141 (181)
32 PRK11036 putative S-adenosyl-L 99.4 8.7E-13 1.9E-17 135.5 13.2 105 296-420 43-147 (255)
33 KOG2785 C2H2-type Zn-finger pr 99.4 7.3E-14 1.6E-18 144.6 5.1 91 29-124 147-243 (390)
34 TIGR02469 CbiT precorrin-6Y C5 99.4 5.6E-12 1.2E-16 113.8 14.4 111 289-422 11-122 (124)
35 PRK10258 biotin biosynthesis p 99.4 2.5E-12 5.4E-17 131.7 13.4 107 288-421 33-139 (251)
36 PF05175 MTS: Methyltransferas 99.4 1.8E-12 3.9E-17 125.1 11.5 104 297-419 31-137 (170)
37 TIGR00406 prmA ribosomal prote 99.4 5E-12 1.1E-16 132.3 14.9 101 296-421 158-258 (288)
38 PRK11873 arsM arsenite S-adeno 99.4 3.3E-12 7.2E-17 132.4 13.2 108 294-422 74-183 (272)
39 PRK12335 tellurite resistance 99.4 3.3E-12 7.2E-17 133.6 12.2 102 296-419 119-220 (287)
40 PF13659 Methyltransf_26: Meth 99.4 3.1E-12 6.8E-17 114.8 10.1 108 298-421 1-114 (117)
41 TIGR01983 UbiG ubiquinone bios 99.4 1.1E-11 2.4E-16 124.3 14.9 140 259-422 9-149 (224)
42 PRK05134 bifunctional 3-demeth 99.4 1.6E-11 3.5E-16 124.2 15.8 143 251-421 5-150 (233)
43 PTZ00098 phosphoethanolamine N 99.4 5.6E-12 1.2E-16 130.2 12.7 113 289-422 44-156 (263)
44 PRK15451 tRNA cmo(5)U34 methyl 99.3 6.9E-12 1.5E-16 128.3 12.6 107 296-422 55-164 (247)
45 PF13649 Methyltransf_25: Meth 99.3 3.7E-12 7.9E-17 111.9 9.0 97 301-416 1-101 (101)
46 PF05401 NodS: Nodulation prot 99.3 3.9E-12 8.5E-17 123.0 9.7 105 296-422 42-146 (201)
47 PLN02490 MPBQ/MSBQ methyltrans 99.3 8.8E-12 1.9E-16 132.3 12.9 115 282-420 97-213 (340)
48 PRK14103 trans-aconitate 2-met 99.3 9E-12 1.9E-16 128.0 12.1 104 289-421 21-125 (255)
49 COG4123 Predicted O-methyltran 99.3 8.3E-12 1.8E-16 125.8 11.3 111 294-420 41-168 (248)
50 PRK00377 cbiT cobalt-precorrin 99.3 2.1E-11 4.6E-16 120.5 13.8 111 290-422 33-145 (198)
51 PF08003 Methyltransf_9: Prote 99.3 1.3E-11 2.9E-16 126.6 11.5 115 287-422 105-219 (315)
52 PRK13944 protein-L-isoaspartat 99.3 3.4E-11 7.3E-16 119.8 13.9 110 285-420 60-171 (205)
53 PRK00216 ubiE ubiquinone/menaq 99.3 3.2E-11 6.9E-16 121.7 13.5 116 285-420 39-156 (239)
54 TIGR00537 hemK_rel_arch HemK-r 99.3 2.8E-11 6.1E-16 117.6 12.4 105 295-421 17-139 (179)
55 PRK00517 prmA ribosomal protei 99.3 2.6E-11 5.7E-16 124.3 12.8 96 295-421 117-212 (250)
56 PRK08287 cobalt-precorrin-6Y C 99.3 5.5E-11 1.2E-15 116.4 14.4 106 289-420 23-129 (187)
57 PRK01683 trans-aconitate 2-met 99.3 2.9E-11 6.4E-16 124.2 12.9 107 288-421 22-129 (258)
58 TIGR00080 pimt protein-L-isoas 99.3 3.6E-11 7.7E-16 120.5 12.9 107 287-420 67-175 (215)
59 PRK15001 SAM-dependent 23S rib 99.3 4.8E-11 1E-15 128.4 14.4 117 289-421 220-339 (378)
60 PLN02336 phosphoethanolamine N 99.3 3.3E-11 7.3E-16 134.8 13.6 107 293-422 262-369 (475)
61 TIGR02021 BchM-ChlM magnesium 99.3 9E-11 1.9E-15 117.8 15.3 104 295-420 53-156 (219)
62 PRK08317 hypothetical protein; 99.3 6.1E-11 1.3E-15 119.3 14.1 119 283-423 5-125 (241)
63 PRK13942 protein-L-isoaspartat 99.3 4.2E-11 9.1E-16 119.8 12.6 108 286-420 65-174 (212)
64 PRK14967 putative methyltransf 99.3 6.4E-11 1.4E-15 119.3 13.9 106 294-420 33-157 (223)
65 TIGR00740 methyltransferase, p 99.3 4.7E-11 1E-15 121.5 13.0 107 296-422 52-161 (239)
66 smart00828 PKS_MT Methyltransf 99.3 2.9E-11 6.2E-16 121.5 11.3 103 299-422 1-104 (224)
67 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 6E-11 1.3E-15 118.4 13.5 114 284-420 26-141 (223)
68 COG2242 CobL Precorrin-6B meth 99.2 9.2E-11 2E-15 112.7 13.4 114 286-424 23-137 (187)
69 PRK00121 trmB tRNA (guanine-N( 99.2 4.3E-11 9.2E-16 118.8 11.5 110 297-422 40-156 (202)
70 PRK05785 hypothetical protein; 99.2 7.3E-11 1.6E-15 119.2 12.0 91 297-416 51-141 (226)
71 PF12756 zf-C2H2_2: C2H2 type 99.2 4.9E-12 1.1E-16 110.3 2.4 95 48-147 1-99 (100)
72 PRK06922 hypothetical protein; 99.2 1.2E-10 2.7E-15 130.9 13.8 110 295-421 416-536 (677)
73 TIGR03533 L3_gln_methyl protei 99.2 2.2E-10 4.8E-15 119.6 14.8 106 297-421 121-250 (284)
74 PRK15128 23S rRNA m(5)C1962 me 99.2 8.4E-11 1.8E-15 127.8 12.0 119 296-427 219-344 (396)
75 TIGR02072 BioC biotin biosynth 99.2 1.2E-10 2.5E-15 117.4 12.3 101 296-421 33-134 (240)
76 PRK07402 precorrin-6B methylas 99.2 2.1E-10 4.7E-15 113.1 13.8 111 288-422 31-142 (196)
77 PF08242 Methyltransf_12: Meth 99.2 5.6E-12 1.2E-16 110.1 2.0 98 302-418 1-99 (99)
78 TIGR01177 conserved hypothetic 99.2 1.8E-10 3.9E-15 122.9 13.6 113 288-420 173-292 (329)
79 PF13489 Methyltransf_23: Meth 99.2 6.9E-11 1.5E-15 111.6 9.3 96 295-422 20-115 (161)
80 PRK10909 rsmD 16S rRNA m(2)G96 99.2 3E-10 6.4E-15 112.3 13.2 106 296-422 52-159 (199)
81 TIGR00536 hemK_fam HemK family 99.2 3E-10 6.5E-15 118.7 14.0 105 299-422 116-244 (284)
82 PLN02336 phosphoethanolamine N 99.2 1.7E-10 3.8E-15 129.0 12.7 114 287-422 27-142 (475)
83 PRK00312 pcm protein-L-isoaspa 99.2 3.8E-10 8.3E-15 112.6 13.8 108 286-421 67-174 (212)
84 PRK11805 N5-glutamine S-adenos 99.2 3.8E-10 8.3E-15 119.0 14.4 104 299-421 135-262 (307)
85 TIGR03840 TMPT_Se_Te thiopurin 99.2 3.9E-10 8.5E-15 112.8 13.4 117 296-420 33-150 (213)
86 PRK11705 cyclopropane fatty ac 99.2 3.1E-10 6.8E-15 123.2 13.7 110 287-422 157-267 (383)
87 PRK04266 fibrillarin; Provisio 99.1 5.1E-10 1.1E-14 112.9 14.0 108 292-421 67-175 (226)
88 KOG4300 Predicted methyltransf 99.1 1.2E-10 2.7E-15 112.1 9.0 102 299-420 78-180 (252)
89 PRK14968 putative methyltransf 99.1 5.2E-10 1.1E-14 108.8 13.6 105 296-420 22-146 (188)
90 PRK09489 rsmC 16S ribosomal RN 99.1 3.9E-10 8.5E-15 120.5 13.7 104 296-420 195-301 (342)
91 TIGR00446 nop2p NOL1/NOP2/sun 99.1 4.3E-10 9.3E-15 116.3 13.4 115 294-426 68-203 (264)
92 KOG1271 Methyltransferases [Ge 99.1 2.1E-10 4.6E-15 108.4 9.7 113 296-425 65-184 (227)
93 COG2263 Predicted RNA methylas 99.1 6.7E-10 1.4E-14 106.4 12.6 84 292-397 40-124 (198)
94 PRK11783 rlmL 23S rRNA m(2)G24 99.1 3.8E-10 8.1E-15 131.6 13.2 112 296-423 537-657 (702)
95 TIGR00091 tRNA (guanine-N(7)-) 99.1 3.9E-10 8.5E-15 111.2 11.3 111 297-422 16-132 (194)
96 PRK14966 unknown domain/N5-glu 99.1 5.9E-10 1.3E-14 120.4 13.4 129 270-420 226-379 (423)
97 COG1092 Predicted SAM-dependen 99.1 3.2E-10 7E-15 122.0 10.8 120 296-427 216-341 (393)
98 TIGR03587 Pse_Me-ase pseudamin 99.1 1.1E-09 2.3E-14 109.0 13.1 99 295-420 41-140 (204)
99 TIGR03534 RF_mod_PrmC protein- 99.1 1.4E-09 3E-14 111.0 14.2 116 284-420 75-215 (251)
100 PRK14904 16S rRNA methyltransf 99.1 1.2E-09 2.7E-14 121.1 14.6 115 293-426 246-381 (445)
101 smart00138 MeTrc Methyltransfe 99.1 7.2E-10 1.6E-14 114.6 11.7 123 295-422 97-242 (264)
102 PRK01544 bifunctional N5-gluta 99.1 1.1E-09 2.4E-14 123.0 14.0 107 297-422 138-269 (506)
103 PRK13255 thiopurine S-methyltr 99.1 1.4E-09 3.1E-14 109.1 13.4 117 295-419 35-152 (218)
104 PLN03075 nicotianamine synthas 99.1 1.7E-09 3.6E-14 112.3 14.1 107 297-422 123-233 (296)
105 COG2890 HemK Methylase of poly 99.1 1.4E-09 3E-14 113.2 13.7 101 300-421 113-237 (280)
106 COG2813 RsmC 16S RNA G1207 met 99.1 1.2E-09 2.6E-14 112.4 12.8 115 285-419 146-263 (300)
107 PRK09328 N5-glutamine S-adenos 99.1 1.9E-09 4.1E-14 111.7 14.3 123 278-420 89-236 (275)
108 PRK14901 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 120.6 13.8 120 294-427 249-389 (434)
109 PLN02781 Probable caffeoyl-CoA 99.1 7.9E-10 1.7E-14 112.2 11.2 118 285-424 59-180 (234)
110 PRK07580 Mg-protoporphyrin IX 99.1 2.3E-09 4.9E-14 108.0 14.3 103 295-419 61-163 (230)
111 PRK11088 rrmA 23S rRNA methylt 99.1 8.2E-10 1.8E-14 114.6 11.3 91 297-420 85-179 (272)
112 PHA03412 putative methyltransf 99.1 1.2E-09 2.7E-14 109.4 12.0 102 297-422 49-163 (241)
113 PRK10901 16S rRNA methyltransf 99.1 1.7E-09 3.6E-14 119.4 14.2 117 294-427 241-377 (427)
114 PRK04457 spermidine synthase; 99.1 1.3E-09 2.7E-14 112.6 12.4 122 284-421 52-176 (262)
115 TIGR00095 RNA methyltransferas 99.1 1.5E-09 3.2E-14 106.7 12.3 110 296-422 48-159 (189)
116 PRK14903 16S rRNA methyltransf 99.0 1.5E-09 3.3E-14 119.6 13.5 116 294-426 234-370 (431)
117 PRK13943 protein-L-isoaspartat 99.0 2.1E-09 4.6E-14 113.7 13.8 106 288-420 71-178 (322)
118 cd02440 AdoMet_MTases S-adenos 99.0 2E-09 4.4E-14 91.9 11.3 103 300-421 1-103 (107)
119 TIGR02716 C20_methyl_CrtF C-20 99.0 2.7E-09 6E-14 112.6 14.4 116 286-422 138-254 (306)
120 TIGR00563 rsmB ribosomal RNA s 99.0 2E-09 4.3E-14 118.9 13.8 120 293-427 234-373 (426)
121 PLN02585 magnesium protoporphy 99.0 2.2E-09 4.7E-14 113.3 13.2 105 296-419 143-247 (315)
122 PRK06202 hypothetical protein; 99.0 1.1E-09 2.4E-14 110.8 10.7 102 295-419 58-164 (232)
123 PRK14902 16S rRNA methyltransf 99.0 1.9E-09 4E-14 119.7 13.4 119 292-427 245-384 (444)
124 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.3E-09 5E-14 115.2 13.4 108 296-422 121-235 (390)
125 smart00650 rADc Ribosomal RNA 99.0 3E-09 6.4E-14 102.5 12.1 109 289-422 5-113 (169)
126 COG2518 Pcm Protein-L-isoaspar 99.0 1.9E-09 4E-14 105.9 10.8 104 288-419 63-166 (209)
127 COG4106 Tam Trans-aconitate me 99.0 7.9E-10 1.7E-14 107.5 7.7 117 280-424 14-131 (257)
128 PF01135 PCMT: Protein-L-isoas 99.0 1.1E-09 2.5E-14 108.9 8.6 108 285-419 60-169 (209)
129 PRK13168 rumA 23S rRNA m(5)U19 99.0 4E-09 8.8E-14 117.0 13.8 118 282-421 282-399 (443)
130 PRK11188 rrmJ 23S rRNA methylt 99.0 3.1E-09 6.7E-14 106.1 11.6 101 295-420 49-163 (209)
131 TIGR03438 probable methyltrans 99.0 5.3E-09 1.2E-13 110.2 14.0 117 284-421 52-176 (301)
132 COG2519 GCD14 tRNA(1-methylade 99.0 4.6E-09 1E-13 105.3 12.3 107 288-420 85-193 (256)
133 PRK00811 spermidine synthase; 99.0 3.8E-09 8.3E-14 110.3 12.3 115 296-422 75-191 (283)
134 PRK03522 rumB 23S rRNA methylu 99.0 3.9E-09 8.5E-14 111.9 12.3 102 296-421 172-273 (315)
135 TIGR03704 PrmC_rel_meth putati 99.0 7E-09 1.5E-13 106.4 13.7 120 282-421 70-215 (251)
136 PF10672 Methyltrans_SAM: S-ad 98.9 6.3E-09 1.4E-13 108.0 12.3 116 296-424 122-240 (286)
137 PF10294 Methyltransf_16: Puta 98.9 5.6E-09 1.2E-13 101.1 10.4 110 293-419 41-153 (173)
138 PF03291 Pox_MCEL: mRNA cappin 98.9 1.1E-08 2.3E-13 108.8 13.1 122 297-422 62-186 (331)
139 TIGR00438 rrmJ cell division p 98.9 5.9E-09 1.3E-13 102.2 10.4 104 292-420 27-144 (188)
140 PTZ00146 fibrillarin; Provisio 98.9 1.3E-08 2.9E-13 105.3 13.2 114 285-420 117-235 (293)
141 COG2521 Predicted archaeal met 98.9 2.9E-09 6.3E-14 104.6 7.1 126 280-419 115-242 (287)
142 TIGR00479 rumA 23S rRNA (uraci 98.9 1E-08 2.3E-13 113.3 12.5 118 283-421 278-395 (431)
143 PRK13256 thiopurine S-methyltr 98.9 2.1E-08 4.5E-13 100.8 13.0 119 295-419 41-160 (226)
144 PLN02476 O-methyltransferase 98.9 1.5E-08 3.3E-13 104.6 12.3 110 295-423 116-229 (278)
145 PHA03411 putative methyltransf 98.9 1.2E-08 2.6E-13 104.6 11.1 71 297-391 64-135 (279)
146 PF03602 Cons_hypoth95: Conser 98.9 4.9E-09 1.1E-13 102.4 7.7 110 296-422 41-153 (183)
147 TIGR02085 meth_trns_rumB 23S r 98.8 1.7E-08 3.7E-13 109.5 12.0 102 296-421 232-333 (374)
148 KOG2904 Predicted methyltransf 98.8 3.7E-08 7.9E-13 99.1 13.1 126 282-421 130-284 (328)
149 TIGR02081 metW methionine bios 98.8 1.7E-08 3.6E-13 99.5 10.4 93 296-415 12-105 (194)
150 PLN02366 spermidine synthase 98.8 3.8E-08 8.3E-13 103.6 13.5 116 296-423 90-207 (308)
151 PLN02672 methionine S-methyltr 98.8 2.3E-08 4.9E-13 119.4 12.8 141 278-423 98-279 (1082)
152 PRK01581 speE spermidine synth 98.8 2.9E-08 6.3E-13 105.4 12.2 116 296-421 149-267 (374)
153 PF08704 GCD14: tRNA methyltra 98.8 2.1E-08 4.6E-13 102.0 10.7 112 287-420 30-144 (247)
154 PF01596 Methyltransf_3: O-met 98.8 3E-08 6.5E-13 98.5 11.0 108 296-422 44-155 (205)
155 PF02475 Met_10: Met-10+ like- 98.8 2.4E-08 5.3E-13 98.5 10.0 107 286-419 92-199 (200)
156 COG0742 N6-adenine-specific me 98.8 1.1E-07 2.4E-12 92.1 13.5 121 285-424 29-156 (187)
157 PF07021 MetW: Methionine bios 98.8 2.8E-08 6E-13 96.3 9.4 93 295-413 11-103 (193)
158 COG4976 Predicted methyltransf 98.8 2.5E-09 5.5E-14 104.7 2.0 113 286-424 115-227 (287)
159 PF05724 TPMT: Thiopurine S-me 98.8 3E-08 6.5E-13 99.5 9.7 118 294-419 34-152 (218)
160 KOG1975 mRNA cap methyltransfe 98.7 2.5E-08 5.5E-13 102.2 8.6 131 285-423 105-238 (389)
161 COG4122 Predicted O-methyltran 98.7 6.5E-08 1.4E-12 96.3 11.3 117 283-423 48-167 (219)
162 KOG2899 Predicted methyltransf 98.7 1E-07 2.3E-12 94.3 12.1 119 294-419 55-206 (288)
163 TIGR00417 speE spermidine synt 98.7 1.3E-07 2.8E-12 98.1 13.6 113 297-422 72-186 (270)
164 PRK03612 spermidine synthase; 98.7 7E-08 1.5E-12 109.1 11.8 118 296-423 296-416 (521)
165 KOG2361 Predicted methyltransf 98.7 3.6E-08 7.8E-13 97.7 8.2 109 300-424 74-185 (264)
166 PTZ00338 dimethyladenosine tra 98.7 8.8E-08 1.9E-12 100.4 10.9 90 285-395 24-113 (294)
167 PRK14896 ksgA 16S ribosomal RN 98.7 9.4E-08 2E-12 98.5 10.7 84 285-391 17-100 (258)
168 KOG1541 Predicted protein carb 98.6 1.6E-07 3.5E-12 91.7 9.9 101 297-421 50-159 (270)
169 PLN02589 caffeoyl-CoA O-methyl 98.6 1.5E-07 3.3E-12 95.9 10.2 111 295-424 77-192 (247)
170 PRK00274 ksgA 16S ribosomal RN 98.6 1.3E-07 2.9E-12 98.2 10.0 83 287-391 32-114 (272)
171 KOG3010 Methyltransferase [Gen 98.6 5E-08 1.1E-12 96.7 6.3 98 299-419 35-134 (261)
172 PRK04338 N(2),N(2)-dimethylgua 98.6 1.4E-07 3E-12 102.3 10.4 99 298-421 58-157 (382)
173 TIGR00478 tly hemolysin TlyA f 98.6 1.3E-07 2.8E-12 95.4 9.1 51 285-335 63-113 (228)
174 PF01170 UPF0020: Putative RNA 98.6 4E-07 8.8E-12 88.7 11.4 119 284-419 15-148 (179)
175 COG1041 Predicted DNA modifica 98.5 4.6E-07 1E-11 95.2 11.3 117 285-420 185-308 (347)
176 KOG0820 Ribosomal RNA adenine 98.5 4.2E-07 9E-12 91.6 10.2 88 283-390 44-131 (315)
177 PRK11727 23S rRNA mA1618 methy 98.5 3.7E-07 8.1E-12 96.4 10.2 82 297-391 114-198 (321)
178 COG2520 Predicted methyltransf 98.5 5.2E-07 1.1E-11 95.5 10.8 101 295-419 186-286 (341)
179 PRK05031 tRNA (uracil-5-)-meth 98.5 7.6E-07 1.6E-11 96.3 12.1 101 298-421 207-319 (362)
180 PRK11933 yebU rRNA (cytosine-C 98.5 9.8E-07 2.1E-11 98.0 13.0 116 294-426 110-246 (470)
181 TIGR02143 trmA_only tRNA (urac 98.5 8.5E-07 1.8E-11 95.6 12.2 100 299-421 199-310 (353)
182 COG3897 Predicted methyltransf 98.5 5.7E-07 1.2E-11 86.6 8.5 110 285-419 67-176 (218)
183 PLN02823 spermine synthase 98.5 9.3E-07 2E-11 94.2 11.2 112 297-421 103-219 (336)
184 KOG3191 Predicted N6-DNA-methy 98.4 2.1E-06 4.5E-11 81.8 11.7 101 298-419 44-165 (209)
185 PF01739 CheR: CheR methyltran 98.4 2.6E-06 5.5E-11 84.1 12.6 120 297-422 31-175 (196)
186 PF02390 Methyltransf_4: Putat 98.4 1.1E-06 2.5E-11 86.7 10.0 109 299-422 19-133 (195)
187 PRK04148 hypothetical protein; 98.4 2.9E-06 6.3E-11 78.1 11.8 79 285-388 4-83 (134)
188 TIGR00755 ksgA dimethyladenosi 98.4 1.2E-06 2.7E-11 90.0 10.4 82 286-390 18-102 (253)
189 KOG3420 Predicted RNA methylas 98.4 4.4E-07 9.5E-12 83.2 5.8 89 288-395 39-128 (185)
190 COG2265 TrmA SAM-dependent met 98.4 2.3E-06 5.1E-11 94.0 12.1 121 279-421 275-395 (432)
191 TIGR00308 TRM1 tRNA(guanine-26 98.4 2.5E-06 5.4E-11 92.2 12.0 101 298-422 45-147 (374)
192 PF05891 Methyltransf_PK: AdoM 98.3 2.5E-06 5.4E-11 84.4 10.3 106 297-421 55-160 (218)
193 PF02527 GidB: rRNA small subu 98.3 3.9E-06 8.5E-11 82.0 11.6 96 300-421 51-147 (184)
194 PLN02232 ubiquinone biosynthes 98.3 1.3E-06 2.9E-11 83.4 7.3 80 324-421 1-80 (160)
195 PF00891 Methyltransf_2: O-met 98.3 8.1E-06 1.8E-10 83.1 12.5 106 287-421 90-198 (241)
196 COG0030 KsgA Dimethyladenosine 98.3 4.2E-06 9.2E-11 85.4 10.2 89 285-395 18-107 (259)
197 PF12147 Methyltransf_20: Puta 98.2 1.8E-05 3.9E-10 81.1 14.1 149 256-422 97-249 (311)
198 PF05958 tRNA_U5-meth_tr: tRNA 98.2 1.1E-05 2.3E-10 87.1 11.9 97 283-395 183-291 (352)
199 KOG1663 O-methyltransferase [S 98.2 1.1E-05 2.3E-10 80.0 10.7 114 295-427 71-188 (237)
200 COG0421 SpeE Spermidine syntha 98.2 1.4E-05 3E-10 83.1 12.0 114 299-425 78-193 (282)
201 KOG2187 tRNA uracil-5-methyltr 98.2 8.1E-06 1.7E-10 89.1 10.3 128 279-427 365-494 (534)
202 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.6E-05 3.4E-10 93.2 13.3 122 283-419 175-344 (702)
203 PF08123 DOT1: Histone methyla 98.2 1.4E-05 3E-10 79.4 10.8 114 289-419 34-155 (205)
204 PRK10611 chemotaxis methyltran 98.1 1.6E-05 3.5E-10 82.9 11.7 119 298-422 116-262 (287)
205 PF09445 Methyltransf_15: RNA 98.1 6.4E-06 1.4E-10 78.5 7.9 77 299-390 1-77 (163)
206 PF05219 DREV: DREV methyltran 98.1 1.8E-05 3.8E-10 80.2 11.3 96 296-422 93-188 (265)
207 COG0116 Predicted N6-adenine-s 98.1 2.4E-05 5.1E-10 83.6 12.8 125 283-424 177-346 (381)
208 COG0220 Predicted S-adenosylme 98.1 1.2E-05 2.6E-10 81.0 9.9 106 299-422 50-164 (227)
209 COG3963 Phospholipid N-methylt 98.1 4.1E-05 8.8E-10 72.2 11.4 113 287-420 38-154 (194)
210 COG0357 GidB Predicted S-adeno 98.1 2.2E-05 4.8E-10 78.2 10.2 96 298-419 68-165 (215)
211 PF05148 Methyltransf_8: Hypot 98.1 8.5E-06 1.8E-10 80.0 7.0 94 283-420 61-156 (219)
212 PF01564 Spermine_synth: Sperm 98.1 1E-05 2.2E-10 82.9 7.9 112 297-421 76-190 (246)
213 PF07942 N2227: N2227-like pro 98.0 5.3E-05 1.1E-09 78.0 12.5 114 296-419 55-199 (270)
214 PF04816 DUF633: Family of unk 98.0 5.6E-05 1.2E-09 75.1 12.0 97 301-419 1-98 (205)
215 KOG1661 Protein-L-isoaspartate 98.0 1.6E-05 3.4E-10 77.7 7.6 108 295-419 80-190 (237)
216 COG1352 CheR Methylase of chem 98.0 4E-05 8.7E-10 79.0 10.7 119 297-421 96-240 (268)
217 PRK00536 speE spermidine synth 97.9 7.3E-05 1.6E-09 76.9 11.8 106 296-427 71-176 (262)
218 KOG2940 Predicted methyltransf 97.9 7.9E-06 1.7E-10 80.4 4.5 100 298-420 73-172 (325)
219 PF06080 DUF938: Protein of un 97.9 4.1E-05 9E-10 75.4 9.5 107 300-420 28-139 (204)
220 PRK00050 16S rRNA m(4)C1402 me 97.9 3.6E-05 7.8E-10 80.5 9.1 85 289-389 11-97 (296)
221 COG0144 Sun tRNA and rRNA cyto 97.9 0.00015 3.2E-09 78.3 13.6 121 292-427 151-293 (355)
222 KOG3045 Predicted RNA methylas 97.9 4.1E-05 8.9E-10 76.8 8.5 92 283-420 169-262 (325)
223 COG1189 Predicted rRNA methyla 97.9 5.6E-05 1.2E-09 75.5 9.2 110 285-420 67-176 (245)
224 PF00398 RrnaAD: Ribosomal RNA 97.9 4.2E-05 9.1E-10 79.1 8.8 86 284-390 17-105 (262)
225 PRK01544 bifunctional N5-gluta 97.9 6E-05 1.3E-09 85.0 10.2 110 297-422 347-462 (506)
226 PF01728 FtsJ: FtsJ-like methy 97.8 1.9E-05 4E-10 76.8 5.2 98 297-419 23-136 (181)
227 KOG2915 tRNA(1-methyladenosine 97.8 0.00014 3.1E-09 73.6 11.1 88 286-390 94-185 (314)
228 TIGR01444 fkbM_fam methyltrans 97.8 5.4E-05 1.2E-09 70.3 7.5 59 300-372 1-60 (143)
229 PF01269 Fibrillarin: Fibrilla 97.8 0.00044 9.4E-09 68.8 14.1 115 285-421 58-177 (229)
230 PRK11760 putative 23S rRNA C24 97.8 6.4E-05 1.4E-09 79.3 8.6 88 295-415 209-296 (357)
231 PF13679 Methyltransf_32: Meth 97.8 0.00026 5.6E-09 66.1 11.5 76 295-388 23-105 (141)
232 KOG1709 Guanidinoacetate methy 97.8 0.00024 5.2E-09 69.7 11.2 104 296-419 100-203 (271)
233 PF03141 Methyltransf_29: Puta 97.7 2.6E-05 5.5E-10 85.4 4.4 120 281-426 97-223 (506)
234 COG0500 SmtA SAM-dependent met 97.7 0.00042 9.1E-09 62.1 11.7 100 301-423 52-156 (257)
235 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00018 3.8E-09 76.2 9.3 112 294-419 43-180 (311)
236 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.6 0.00025 5.3E-09 74.2 9.9 117 294-426 82-223 (283)
237 KOG2730 Methylase [General fun 97.6 5.9E-05 1.3E-09 74.0 4.8 79 297-389 94-172 (263)
238 KOG3201 Uncharacterized conser 97.6 5.5E-05 1.2E-09 70.9 4.0 121 284-420 16-138 (201)
239 PRK10742 putative methyltransf 97.6 0.00023 5E-09 72.2 8.8 100 279-391 72-173 (250)
240 KOG1501 Arginine N-methyltrans 97.6 8.2E-05 1.8E-09 79.4 5.3 132 405-563 455-603 (636)
241 PF13578 Methyltransf_24: Meth 97.6 5.4E-05 1.2E-09 66.8 3.3 101 302-422 1-105 (106)
242 KOG2482 Predicted C2H2-type Zn 97.6 5.1E-05 1.1E-09 78.1 3.4 77 44-125 142-219 (423)
243 PF03059 NAS: Nicotianamine sy 97.5 0.00069 1.5E-08 70.1 11.4 106 297-421 120-229 (276)
244 PHA01634 hypothetical protein 97.5 0.00034 7.4E-09 63.1 7.5 51 295-345 26-76 (156)
245 COG4262 Predicted spermidine s 97.5 0.00072 1.6E-08 71.0 10.9 123 297-429 289-414 (508)
246 PF05971 Methyltransf_10: Prot 97.4 0.00065 1.4E-08 71.0 9.7 82 298-393 103-188 (299)
247 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.0003 6.4E-09 72.1 6.9 122 294-420 53-197 (256)
248 PF09243 Rsm22: Mitochondrial 97.4 0.0015 3.3E-08 68.0 12.3 58 286-343 22-81 (274)
249 COG2384 Predicted SAM-dependen 97.3 0.0018 3.9E-08 64.1 11.1 106 280-413 5-111 (226)
250 COG1889 NOP1 Fibrillarin-like 97.3 0.0027 5.9E-08 62.0 11.8 114 285-420 61-178 (231)
251 COG0293 FtsJ 23S rRNA methylas 97.3 0.00086 1.9E-08 66.2 8.3 100 295-419 43-156 (205)
252 TIGR03439 methyl_EasF probable 97.2 0.0065 1.4E-07 64.5 14.2 119 284-420 65-195 (319)
253 TIGR02987 met_A_Alw26 type II 97.1 0.0016 3.5E-08 74.0 9.7 80 297-390 31-120 (524)
254 KOG1269 SAM-dependent methyltr 97.1 0.001 2.2E-08 71.7 7.0 107 294-420 107-213 (364)
255 KOG1122 tRNA and rRNA cytosine 97.1 0.0036 7.7E-08 67.3 10.7 120 292-427 236-376 (460)
256 PF06962 rRNA_methylase: Putat 97.0 0.0039 8.4E-08 58.0 9.0 83 322-420 1-90 (140)
257 COG1063 Tdh Threonine dehydrog 96.8 0.0033 7.2E-08 67.8 8.4 96 295-419 166-266 (350)
258 KOG2352 Predicted spermine/spe 96.7 0.012 2.6E-07 64.7 11.4 102 299-419 50-158 (482)
259 KOG4058 Uncharacterized conser 96.7 0.0082 1.8E-07 55.7 8.5 99 296-419 71-169 (199)
260 PF04672 Methyltransf_19: S-ad 96.6 0.0085 1.8E-07 61.6 8.8 110 299-424 70-192 (267)
261 TIGR00006 S-adenosyl-methyltra 96.6 0.012 2.5E-07 62.0 9.8 86 289-389 12-99 (305)
262 PF02005 TRM: N2,N2-dimethylgu 96.6 0.0081 1.8E-07 65.3 8.8 103 297-422 49-154 (377)
263 KOG3178 Hydroxyindole-O-methyl 96.5 0.014 3E-07 61.8 10.1 96 299-421 179-274 (342)
264 KOG1227 Putative methyltransfe 96.5 0.0013 2.7E-08 67.7 2.3 96 297-417 194-290 (351)
265 KOG2798 Putative trehalase [Ca 96.5 0.01 2.2E-07 61.6 8.7 116 298-419 151-293 (369)
266 KOG1331 Predicted methyltransf 96.5 0.0016 3.5E-08 66.8 2.9 112 285-431 36-147 (293)
267 KOG0024 Sorbitol dehydrogenase 96.5 0.013 2.9E-07 61.2 9.5 98 294-419 166-270 (354)
268 PF04445 SAM_MT: Putative SAM- 96.4 0.0093 2E-07 60.2 7.3 89 294-391 70-160 (234)
269 KOG4589 Cell division protein 96.3 0.022 4.7E-07 55.1 9.0 100 295-419 67-181 (232)
270 KOG3987 Uncharacterized conser 96.1 0.0025 5.4E-08 62.2 1.5 108 283-421 96-206 (288)
271 COG1064 AdhP Zn-dependent alco 96.1 0.03 6.6E-07 59.6 9.6 92 293-419 162-256 (339)
272 PRK09880 L-idonate 5-dehydroge 96.0 0.022 4.8E-07 60.9 8.6 96 295-420 167-264 (343)
273 COG5459 Predicted rRNA methyla 95.9 0.021 4.6E-07 60.0 7.2 118 284-420 100-223 (484)
274 PF11968 DUF3321: Putative met 95.8 0.022 4.9E-07 56.5 6.9 84 299-417 53-139 (219)
275 KOG2920 Predicted methyltransf 95.8 0.011 2.3E-07 61.0 4.8 117 294-421 113-233 (282)
276 PF04989 CmcI: Cephalosporin h 95.8 0.038 8.3E-07 54.7 8.2 123 275-420 14-145 (206)
277 PF01861 DUF43: Protein of unk 95.7 0.21 4.6E-06 50.6 13.3 107 288-416 35-142 (243)
278 PF07091 FmrO: Ribosomal RNA m 95.5 0.057 1.2E-06 54.9 8.5 85 282-388 92-177 (251)
279 PF03141 Methyltransf_29: Puta 95.5 0.017 3.7E-07 63.8 5.1 101 299-422 367-467 (506)
280 PRK09424 pntA NAD(P) transhydr 95.4 0.078 1.7E-06 59.8 10.1 43 295-338 162-206 (509)
281 KOG1596 Fibrillarin and relate 95.3 0.048 1E-06 54.7 7.2 109 292-422 151-261 (317)
282 KOG2198 tRNA cytosine-5-methyl 95.2 0.17 3.6E-06 54.1 11.0 120 293-426 151-300 (375)
283 KOG1253 tRNA methyltransferase 95.0 0.013 2.8E-07 64.3 2.3 112 296-427 108-221 (525)
284 COG4798 Predicted methyltransf 95.0 0.052 1.1E-06 52.9 6.0 111 292-421 43-165 (238)
285 KOG2793 Putative N2,N2-dimethy 94.9 0.11 2.4E-06 53.0 8.6 111 297-419 86-196 (248)
286 cd08283 FDH_like_1 Glutathione 94.9 0.11 2.3E-06 56.7 9.2 46 294-339 181-228 (386)
287 COG1867 TRM1 N2,N2-dimethylgua 94.8 0.11 2.4E-06 55.5 8.4 101 298-422 53-154 (380)
288 cd08281 liver_ADH_like1 Zinc-d 94.8 0.074 1.6E-06 57.5 7.4 46 293-338 187-234 (371)
289 cd00315 Cyt_C5_DNA_methylase C 94.7 0.066 1.4E-06 55.8 6.7 69 300-390 2-70 (275)
290 cd00401 AdoHcyase S-adenosyl-L 94.6 0.21 4.5E-06 55.0 10.4 95 287-420 190-287 (413)
291 TIGR03451 mycoS_dep_FDH mycoth 94.5 0.09 1.9E-06 56.6 7.2 45 294-338 173-219 (358)
292 TIGR03366 HpnZ_proposed putati 94.4 0.14 2.9E-06 53.2 8.0 44 295-338 118-163 (280)
293 KOG1562 Spermidine synthase [A 94.2 0.16 3.5E-06 52.6 7.8 114 295-422 119-236 (337)
294 TIGR01202 bchC 2-desacetyl-2-h 93.8 0.2 4.3E-06 52.8 8.1 83 297-419 144-228 (308)
295 COG0275 Predicted S-adenosylme 93.8 0.39 8.4E-06 50.2 9.7 87 288-389 14-103 (314)
296 cd08239 THR_DH_like L-threonin 93.4 0.21 4.5E-06 53.1 7.4 45 294-338 160-206 (339)
297 cd08230 glucose_DH Glucose deh 93.3 0.26 5.6E-06 52.9 8.1 92 295-419 170-266 (355)
298 COG0286 HsdM Type I restrictio 93.1 0.58 1.3E-05 52.9 10.8 118 286-416 175-320 (489)
299 PLN02740 Alcohol dehydrogenase 93.1 0.66 1.4E-05 50.4 10.9 46 293-338 194-241 (381)
300 cd08237 ribitol-5-phosphate_DH 93.0 0.42 9E-06 51.1 9.0 90 295-419 161-253 (341)
301 TIGR00561 pntA NAD(P) transhyd 92.8 0.31 6.8E-06 55.0 7.9 43 295-338 161-205 (511)
302 PLN02827 Alcohol dehydrogenase 92.8 0.51 1.1E-05 51.3 9.5 45 294-338 190-236 (378)
303 PRK10309 galactitol-1-phosphat 92.6 0.31 6.7E-06 52.0 7.4 45 294-338 157-203 (347)
304 KOG3115 Methyltransferase-like 92.2 0.43 9.4E-06 47.0 6.9 69 297-372 60-129 (249)
305 PF00145 DNA_methylase: C-5 cy 92.1 0.28 6.1E-06 51.6 6.3 68 300-390 2-69 (335)
306 PF11599 AviRa: RRNA methyltra 91.8 1.5 3.3E-05 43.7 10.2 134 283-419 38-210 (246)
307 KOG1099 SAM-dependent methyltr 91.8 0.22 4.9E-06 49.7 4.5 101 294-419 37-160 (294)
308 COG1062 AdhC Zn-dependent alco 91.7 0.44 9.5E-06 50.6 6.8 50 292-341 180-231 (366)
309 PF01795 Methyltransf_5: MraW 91.7 0.3 6.4E-06 51.6 5.7 81 294-389 17-100 (310)
310 PF02737 3HCDH_N: 3-hydroxyacy 91.3 1.1 2.4E-05 43.5 9.0 110 300-427 1-119 (180)
311 TIGR00936 ahcY adenosylhomocys 91.3 1.3 2.7E-05 48.8 10.3 38 295-333 192-231 (406)
312 PF13912 zf-C2H2_6: C2H2-type 91.2 0.11 2.4E-06 33.9 1.2 26 46-71 1-26 (27)
313 cd08300 alcohol_DH_class_III c 91.1 1.6 3.4E-05 47.2 10.8 45 294-338 183-229 (368)
314 PRK11524 putative methyltransf 91.1 0.46 1E-05 49.7 6.4 47 295-342 206-252 (284)
315 COG0686 Ald Alanine dehydrogen 91.1 0.73 1.6E-05 48.3 7.6 97 297-419 167-265 (371)
316 PLN02668 indole-3-acetate carb 91.0 1.2 2.5E-05 48.6 9.6 21 400-420 215-235 (386)
317 PF05711 TylF: Macrocin-O-meth 91.0 2.1 4.6E-05 43.9 10.9 126 279-423 56-213 (248)
318 PF00107 ADH_zinc_N: Zinc-bind 90.7 0.72 1.6E-05 41.5 6.6 84 307-420 1-87 (130)
319 PF07757 AdoMet_MTase: Predict 90.4 0.43 9.3E-06 42.3 4.5 32 297-329 58-89 (112)
320 KOG2651 rRNA adenine N-6-methy 90.4 0.71 1.5E-05 49.5 6.9 43 297-340 153-196 (476)
321 PLN02586 probable cinnamyl alc 90.3 1.4 3E-05 47.5 9.5 36 295-331 181-218 (360)
322 PRK13699 putative methylase; P 90.3 1.1 2.4E-05 45.4 8.1 46 296-342 162-207 (227)
323 PRK05476 S-adenosyl-L-homocyst 90.2 1.6 3.5E-05 48.3 9.9 85 295-419 209-296 (425)
324 PF01555 N6_N4_Mtase: DNA meth 90.2 0.48 1E-05 46.8 5.4 43 295-338 189-231 (231)
325 PLN02494 adenosylhomocysteinas 90.1 1.1 2.3E-05 50.1 8.4 95 286-419 241-338 (477)
326 COG1568 Predicted methyltransf 89.9 0.49 1.1E-05 48.6 5.1 85 289-390 144-229 (354)
327 cd08254 hydroxyacyl_CoA_DH 6-h 89.9 2.3 5.1E-05 44.6 10.6 99 292-420 160-261 (338)
328 TIGR02819 fdhA_non_GSH formald 89.5 0.64 1.4E-05 51.0 6.2 104 294-420 182-297 (393)
329 KOG3924 Putative protein methy 89.5 0.97 2.1E-05 48.8 7.1 135 261-419 163-305 (419)
330 PF03492 Methyltransf_7: SAM d 89.4 2.8 6E-05 45.1 10.7 113 295-420 14-181 (334)
331 KOG0022 Alcohol dehydrogenase, 89.4 0.73 1.6E-05 48.4 6.0 48 292-339 187-236 (375)
332 cd05188 MDR Medium chain reduc 89.2 1.4 3.1E-05 44.2 8.2 44 294-338 131-176 (271)
333 COG3129 Predicted SAM-dependen 89.2 0.63 1.4E-05 46.7 5.2 81 297-391 78-162 (292)
334 PF13894 zf-C2H2_4: C2H2-type 89.0 0.24 5.1E-06 30.7 1.4 23 48-70 2-24 (24)
335 TIGR03201 dearomat_had 6-hydro 88.9 2.5 5.5E-05 45.2 10.1 44 294-338 163-208 (349)
336 PF05605 zf-Di19: Drought indu 88.8 0.6 1.3E-05 36.0 3.8 50 46-123 2-51 (54)
337 TIGR02822 adh_fam_2 zinc-bindi 88.7 2.8 6.2E-05 44.5 10.3 44 294-338 162-207 (329)
338 PF00096 zf-C2H2: Zinc finger, 88.6 0.31 6.7E-06 30.3 1.7 21 103-123 2-22 (23)
339 TIGR00675 dcm DNA-methyltransf 88.4 0.68 1.5E-05 49.2 5.3 66 301-389 1-66 (315)
340 cd08238 sorbose_phosphate_red 88.0 2.6 5.7E-05 46.3 9.7 46 294-339 172-222 (410)
341 KOG2078 tRNA modification enzy 88.0 0.33 7.2E-06 52.6 2.5 66 295-373 247-312 (495)
342 TIGR00027 mthyl_TIGR00027 meth 88.0 3.4 7.4E-05 42.7 10.0 131 279-423 64-198 (260)
343 cd08232 idonate-5-DH L-idonate 87.9 2.9 6.2E-05 44.2 9.6 90 297-419 165-259 (339)
344 KOG4173 Alpha-SNAP protein [In 87.8 0.18 3.9E-06 49.1 0.4 70 45-129 105-174 (253)
345 cd08285 NADP_ADH NADP(H)-depen 87.7 1.2 2.6E-05 47.5 6.7 45 294-338 163-209 (351)
346 PF13821 DUF4187: Domain of un 87.7 0.23 5E-06 38.6 0.8 27 90-118 18-44 (55)
347 KOG2671 Putative RNA methylase 87.6 0.46 9.9E-06 50.3 3.2 92 283-390 193-292 (421)
348 PF02254 TrkA_N: TrkA-N domain 87.2 4.6 0.0001 35.6 9.1 90 301-419 1-93 (116)
349 PLN03154 putative allyl alcoho 86.9 3.6 7.9E-05 44.1 9.9 45 292-337 153-200 (348)
350 PHA00616 hypothetical protein 86.9 0.29 6.4E-06 36.1 0.9 29 46-74 1-29 (44)
351 cd08233 butanediol_DH_like (2R 86.8 1.7 3.8E-05 46.3 7.3 45 294-338 169-215 (351)
352 cd08278 benzyl_alcohol_DH Benz 86.7 1.5 3.3E-05 47.3 6.8 45 294-338 183-229 (365)
353 PLN02514 cinnamyl-alcohol dehy 86.7 4.1 9E-05 43.7 10.2 38 295-333 178-217 (357)
354 cd08231 MDR_TM0436_like Hypoth 86.4 5.4 0.00012 42.7 10.8 43 295-337 175-219 (361)
355 PLN02178 cinnamyl-alcohol dehy 85.9 5.9 0.00013 43.0 10.9 35 296-331 177-213 (375)
356 TIGR02825 B4_12hDH leukotriene 85.5 2.5 5.5E-05 44.5 7.7 45 292-337 133-180 (325)
357 cd05279 Zn_ADH1 Liver alcohol 85.4 3 6.5E-05 44.9 8.3 46 293-338 179-226 (365)
358 cd08240 6_hydroxyhexanoate_dh_ 85.3 7.9 0.00017 41.1 11.4 43 295-337 173-217 (350)
359 PRK10083 putative oxidoreducta 85.2 5.9 0.00013 41.8 10.4 45 294-338 157-204 (339)
360 PF03269 DUF268: Caenorhabditi 85.2 1.2 2.6E-05 42.4 4.4 115 298-446 2-128 (177)
361 TIGR02818 adh_III_F_hyde S-(hy 85.1 2.2 4.8E-05 46.1 7.1 46 293-338 181-228 (368)
362 PF10354 DUF2431: Domain of un 84.9 3.8 8.2E-05 39.4 7.8 108 302-422 1-125 (166)
363 PRK11524 putative methyltransf 84.8 1.2 2.7E-05 46.5 4.8 59 360-421 7-79 (284)
364 PLN02702 L-idonate 5-dehydroge 84.6 4.9 0.00011 43.1 9.5 45 294-338 178-224 (364)
365 cd08293 PTGR2 Prostaglandin re 84.4 4.8 0.0001 42.6 9.3 96 295-419 150-251 (345)
366 PF05206 TRM13: Methyltransfer 84.3 3.2 7E-05 42.9 7.5 73 287-373 8-86 (259)
367 TIGR00518 alaDH alanine dehydr 84.2 2 4.4E-05 46.7 6.3 40 296-336 165-206 (370)
368 COG0270 Dcm Site-specific DNA 83.7 2.4 5.2E-05 45.3 6.5 73 298-390 3-75 (328)
369 PF00096 zf-C2H2: Zinc finger, 83.7 0.47 1E-05 29.5 0.7 22 48-70 2-23 (23)
370 cd08234 threonine_DH_like L-th 83.6 7.1 0.00015 41.0 10.1 99 292-419 154-254 (334)
371 PF13894 zf-C2H2_4: C2H2-type 83.5 1 2.2E-05 27.7 2.2 21 103-123 2-22 (24)
372 cd08265 Zn_ADH3 Alcohol dehydr 83.3 7.9 0.00017 42.0 10.5 45 294-338 200-246 (384)
373 PRK07066 3-hydroxybutyryl-CoA 83.1 7.2 0.00016 41.6 9.7 100 299-419 8-116 (321)
374 PRK10458 DNA cytosine methylas 82.9 5.1 0.00011 45.0 8.8 42 298-339 88-129 (467)
375 PRK05225 ketol-acid reductoiso 82.9 1.9 4.1E-05 47.9 5.3 94 295-424 33-133 (487)
376 cd05278 FDH_like Formaldehyde 82.7 2.8 6.2E-05 44.3 6.6 97 294-419 164-264 (347)
377 PRK05786 fabG 3-ketoacyl-(acyl 82.5 12 0.00026 37.1 10.7 77 297-390 4-89 (238)
378 COG1748 LYS9 Saccharopine dehy 82.4 3.6 7.8E-05 45.0 7.2 73 299-390 2-76 (389)
379 cd05285 sorbitol_DH Sorbitol d 82.1 11 0.00025 39.8 11.0 46 293-338 158-205 (343)
380 PRK06701 short chain dehydroge 82.0 9.1 0.0002 39.8 10.0 79 295-389 43-131 (290)
381 PRK08306 dipicolinate synthase 81.5 11 0.00023 39.8 10.3 48 288-336 142-191 (296)
382 PRK05808 3-hydroxybutyryl-CoA 81.5 13 0.00028 38.6 10.9 108 299-424 4-120 (282)
383 COG5236 Uncharacterized conser 81.4 1.5 3.3E-05 46.0 3.7 102 53-154 160-281 (493)
384 PRK12548 shikimate 5-dehydroge 81.4 9.8 0.00021 39.9 9.9 45 285-330 113-160 (289)
385 TIGR02356 adenyl_thiF thiazole 81.3 4.4 9.6E-05 40.1 7.0 34 296-329 19-54 (202)
386 KOG2462 C2H2-type Zn-finger pr 81.2 1.4 3.1E-05 45.2 3.3 75 44-122 159-236 (279)
387 PRK08293 3-hydroxybutyryl-CoA 81.1 12 0.00025 39.2 10.3 104 299-419 4-117 (287)
388 PRK05708 2-dehydropantoate 2-r 81.0 8.7 0.00019 40.6 9.4 98 299-420 3-102 (305)
389 PF13913 zf-C2HC_2: zinc-finge 80.8 1.1 2.3E-05 29.0 1.5 19 103-122 4-22 (25)
390 cd08294 leukotriene_B4_DH_like 80.8 8.3 0.00018 40.3 9.3 97 292-419 138-238 (329)
391 PRK01747 mnmC bifunctional tRN 80.6 5.9 0.00013 46.5 8.8 120 297-422 57-206 (662)
392 cd08295 double_bond_reductase_ 80.5 11 0.00024 39.9 10.1 47 291-338 145-194 (338)
393 PF13909 zf-H2C2_5: C2H2-type 80.2 0.91 2E-05 28.6 1.1 23 48-71 2-24 (24)
394 cd01065 NAD_bind_Shikimate_DH 80.2 13 0.00028 34.4 9.5 51 285-335 6-58 (155)
395 cd08296 CAD_like Cinnamyl alco 79.9 9.9 0.00021 40.1 9.6 44 294-338 160-205 (333)
396 PRK09260 3-hydroxybutyryl-CoA 79.6 7.8 0.00017 40.4 8.5 109 299-424 2-119 (288)
397 PF11899 DUF3419: Protein of u 79.5 4.4 9.6E-05 44.2 6.7 47 292-339 30-76 (380)
398 COG2933 Predicted SAM-dependen 79.5 4.9 0.00011 41.2 6.5 89 294-415 208-296 (358)
399 TIGR02354 thiF_fam2 thiamine b 79.4 19 0.00041 35.6 10.7 34 296-329 19-54 (200)
400 PRK12475 thiamine/molybdopteri 79.3 5.2 0.00011 43.0 7.1 35 296-330 22-58 (338)
401 cd08286 FDH_like_ADH2 formalde 79.3 6.2 0.00013 41.8 7.8 98 294-419 163-263 (345)
402 cd08263 Zn_ADH10 Alcohol dehyd 79.0 16 0.00034 39.2 10.9 97 294-419 184-284 (367)
403 PRK07502 cyclohexadienyl dehyd 78.9 11 0.00023 39.8 9.3 88 299-419 7-97 (307)
404 PRK07417 arogenate dehydrogena 78.6 11 0.00023 39.2 9.1 89 300-424 2-92 (279)
405 PTZ00075 Adenosylhomocysteinas 78.5 14 0.0003 41.6 10.2 85 295-419 251-338 (476)
406 KOG0023 Alcohol dehydrogenase, 78.5 7.3 0.00016 41.3 7.5 43 295-338 179-223 (360)
407 KOG0821 Predicted ribosomal RN 78.3 4.9 0.00011 40.2 5.9 72 287-373 40-111 (326)
408 PF07279 DUF1442: Protein of u 78.0 29 0.00062 34.8 11.2 100 295-419 39-145 (218)
409 PRK07530 3-hydroxybutyryl-CoA 78.0 21 0.00045 37.3 11.1 109 299-425 5-122 (292)
410 KOG1205 Predicted dehydrogenas 77.9 6.8 0.00015 41.0 7.2 80 296-389 10-98 (282)
411 PRK08644 thiamine biosynthesis 77.5 8.9 0.00019 38.3 7.8 33 297-329 27-61 (212)
412 cd08255 2-desacetyl-2-hydroxye 77.4 14 0.0003 37.6 9.5 46 293-338 93-140 (277)
413 PRK12549 shikimate 5-dehydroge 77.2 19 0.00041 37.7 10.4 50 285-334 114-165 (284)
414 COG0604 Qor NADPH:quinone redu 77.2 8.7 0.00019 41.1 8.1 99 292-419 137-238 (326)
415 PRK06035 3-hydroxyacyl-CoA deh 77.1 17 0.00037 38.0 10.1 42 299-341 4-47 (291)
416 cd08242 MDR_like Medium chain 77.1 17 0.00037 37.9 10.2 90 293-419 151-242 (319)
417 cd08287 FDH_like_ADH3 formalde 77.0 6.1 0.00013 41.8 6.9 95 294-419 165-265 (345)
418 PHA00733 hypothetical protein 77.0 4.7 0.0001 37.1 5.2 53 45-126 72-124 (128)
419 KOG2013 SMT3/SUMO-activating c 76.9 3 6.5E-05 46.0 4.4 77 297-388 11-109 (603)
420 TIGR02437 FadB fatty oxidation 76.7 13 0.00029 44.1 10.1 110 299-427 314-433 (714)
421 cd08261 Zn_ADH7 Alcohol dehydr 76.7 5.6 0.00012 42.0 6.5 97 294-419 156-255 (337)
422 cd08301 alcohol_DH_plants Plan 76.6 6.4 0.00014 42.4 7.0 45 294-338 184-230 (369)
423 cd08256 Zn_ADH2 Alcohol dehydr 76.5 6.2 0.00013 42.0 6.8 44 294-337 171-216 (350)
424 PRK07806 short chain dehydroge 76.3 23 0.0005 35.3 10.6 108 296-419 4-131 (248)
425 PRK14027 quinate/shikimate deh 76.3 16 0.00034 38.3 9.5 49 284-332 113-163 (283)
426 cd00757 ThiF_MoeB_HesA_family 76.3 13 0.00028 37.4 8.7 33 296-328 19-53 (228)
427 PF02636 Methyltransf_28: Puta 76.2 4 8.7E-05 41.8 5.0 45 298-342 19-72 (252)
428 PRK13699 putative methylase; P 76.1 3.4 7.3E-05 41.8 4.3 55 362-419 2-69 (227)
429 PRK07063 short chain dehydroge 76.0 13 0.00028 37.5 8.8 80 296-389 5-93 (260)
430 PRK09291 short chain dehydroge 75.9 11 0.00023 37.9 8.1 76 298-389 2-80 (257)
431 PRK12749 quinate/shikimate deh 75.8 16 0.00034 38.5 9.4 56 285-340 111-168 (288)
432 PRK08945 putative oxoacyl-(acy 75.6 12 0.00027 37.4 8.4 80 295-389 9-99 (247)
433 cd08279 Zn_ADH_class_III Class 75.6 7.4 0.00016 41.8 7.1 45 293-337 178-224 (363)
434 PRK05854 short chain dehydroge 75.5 13 0.00028 39.2 8.7 81 295-389 11-100 (313)
435 PHA00732 hypothetical protein 75.3 3.3 7.1E-05 34.8 3.3 44 46-121 1-44 (79)
436 cd01487 E1_ThiF_like E1_ThiF_l 75.1 9.4 0.0002 36.9 7.0 31 300-330 1-33 (174)
437 PRK08339 short chain dehydroge 75.1 14 0.0003 37.8 8.7 79 296-389 6-92 (263)
438 cd08236 sugar_DH NAD(P)-depend 75.0 9.1 0.0002 40.4 7.6 43 294-336 156-200 (343)
439 PRK05867 short chain dehydroge 74.9 13 0.00029 37.3 8.5 79 296-390 7-94 (253)
440 cd08277 liver_alcohol_DH_like 74.8 7.8 0.00017 41.7 7.1 46 293-338 180-227 (365)
441 cd08245 CAD Cinnamyl alcohol d 74.7 28 0.00061 36.4 11.2 43 294-337 159-203 (330)
442 PF12756 zf-C2H2_2: C2H2 type 74.6 2 4.3E-05 36.7 1.9 30 46-75 50-79 (100)
443 PRK06172 short chain dehydroge 74.5 15 0.00032 36.9 8.6 79 296-390 5-92 (253)
444 PRK05396 tdh L-threonine 3-deh 74.2 7.2 0.00016 41.3 6.5 43 296-338 162-206 (341)
445 PRK06139 short chain dehydroge 74.0 10 0.00022 40.5 7.6 79 296-390 5-92 (330)
446 PF00106 adh_short: short chai 74.0 13 0.00029 34.5 7.7 76 299-389 1-87 (167)
447 PF06859 Bin3: Bicoid-interact 73.9 1.7 3.6E-05 38.8 1.3 38 382-420 1-42 (110)
448 KOG2352 Predicted spermine/spe 73.9 3.2 6.9E-05 46.1 3.7 112 296-420 294-414 (482)
449 cd05281 TDH Threonine dehydrog 73.8 10 0.00022 40.2 7.5 42 296-337 162-205 (341)
450 PRK07688 thiamine/molybdopteri 73.7 11 0.00023 40.6 7.7 34 296-329 22-57 (339)
451 PRK07819 3-hydroxybutyryl-CoA 73.7 23 0.00049 37.1 10.0 107 299-423 6-122 (286)
452 cd05284 arabinose_DH_like D-ar 73.5 13 0.00028 39.2 8.2 43 295-337 165-209 (340)
453 PRK05597 molybdopterin biosynt 73.2 9.3 0.0002 41.4 7.1 35 296-330 26-62 (355)
454 PF01262 AlaDh_PNT_C: Alanine 73.1 1.9 4.2E-05 41.2 1.7 42 295-337 17-60 (168)
455 PLN03209 translocon at the inn 73.1 12 0.00026 43.1 8.2 94 288-389 70-166 (576)
456 PRK09496 trkA potassium transp 73.1 30 0.00065 38.3 11.4 73 296-388 229-303 (453)
457 PRK03562 glutathione-regulated 73.0 15 0.00034 42.8 9.3 69 298-388 400-470 (621)
458 PLN02256 arogenate dehydrogena 73.0 24 0.00053 37.3 10.0 36 294-330 32-69 (304)
459 PRK06914 short chain dehydroge 72.9 17 0.00036 37.2 8.7 79 297-389 2-88 (280)
460 PRK06124 gluconate 5-dehydroge 72.9 17 0.00037 36.5 8.7 78 296-389 9-95 (256)
461 PRK11730 fadB multifunctional 72.6 19 0.00042 42.7 10.1 109 299-426 314-432 (715)
462 PF05050 Methyltransf_21: Meth 72.2 8.5 0.00018 35.8 5.8 43 303-345 1-50 (167)
463 PRK13403 ketol-acid reductoiso 72.2 19 0.00041 38.5 8.8 93 294-423 12-107 (335)
464 PRK08762 molybdopterin biosynt 72.2 8.4 0.00018 42.0 6.5 33 297-329 134-168 (376)
465 PRK06522 2-dehydropantoate 2-r 72.1 26 0.00056 36.4 10.0 95 300-420 2-98 (304)
466 PF01488 Shikimate_DH: Shikima 72.0 9.9 0.00021 35.0 6.1 72 295-389 9-82 (135)
467 PRK07035 short chain dehydroge 72.0 18 0.0004 36.2 8.6 79 296-390 6-93 (252)
468 cd05213 NAD_bind_Glutamyl_tRNA 71.8 26 0.00056 37.1 10.0 37 296-332 176-214 (311)
469 PF13912 zf-C2H2_6: C2H2-type 71.7 2.2 4.9E-05 27.5 1.2 20 103-122 3-22 (27)
470 KOG1994 Predicted RNA binding 71.4 2.2 4.9E-05 42.3 1.6 24 44-67 237-260 (268)
471 PRK08862 short chain dehydroge 71.4 17 0.00037 36.3 8.2 79 296-390 3-91 (227)
472 cd08284 FDH_like_2 Glutathione 71.3 37 0.00081 35.7 11.2 44 294-337 164-209 (344)
473 smart00355 ZnF_C2H2 zinc finge 71.1 3.6 7.8E-05 25.4 2.1 20 103-122 2-21 (26)
474 PLN02989 cinnamyl-alcohol dehy 70.9 28 0.00061 36.5 10.1 77 297-389 4-84 (325)
475 PRK06130 3-hydroxybutyryl-CoA 70.6 28 0.0006 36.6 9.9 40 299-339 5-46 (311)
476 PRK07062 short chain dehydroge 70.6 20 0.00043 36.3 8.6 80 296-389 6-94 (265)
477 PRK05876 short chain dehydroge 70.3 20 0.00044 36.9 8.6 79 296-390 4-91 (275)
478 PRK07677 short chain dehydroge 70.2 19 0.00042 36.1 8.4 77 298-390 1-86 (252)
479 TIGR02441 fa_ox_alpha_mit fatt 70.0 17 0.00036 43.4 8.8 110 299-427 336-455 (737)
480 KOG2785 C2H2-type Zn-finger pr 69.9 2.6 5.7E-05 45.1 1.8 44 44-87 215-263 (390)
481 PRK10669 putative cation:proto 69.9 21 0.00046 41.0 9.5 68 299-388 418-487 (558)
482 PRK06125 short chain dehydroge 69.6 22 0.00048 35.9 8.6 80 296-390 5-89 (259)
483 PRK11154 fadJ multifunctional 69.4 24 0.00053 41.9 10.0 109 299-426 310-429 (708)
484 KOG2231 Predicted E3 ubiquitin 69.3 2.7 5.8E-05 48.6 1.9 103 48-153 117-241 (669)
485 PLN02545 3-hydroxybutyryl-CoA 69.2 51 0.0011 34.4 11.5 109 299-425 5-122 (295)
486 PRK06249 2-dehydropantoate 2-r 69.2 18 0.00038 38.3 8.1 98 298-420 5-104 (313)
487 COG0373 HemA Glutamyl-tRNA red 69.1 27 0.00059 38.5 9.5 90 295-410 175-267 (414)
488 PRK07890 short chain dehydroge 69.1 24 0.00051 35.4 8.7 79 296-390 3-90 (258)
489 PF02826 2-Hacid_dh_C: D-isome 69.1 9.1 0.0002 37.0 5.4 39 295-334 33-73 (178)
490 TIGR00692 tdh L-threonine 3-de 69.0 12 0.00025 39.7 6.7 43 295-337 159-203 (340)
491 PRK07478 short chain dehydroge 68.8 24 0.00052 35.4 8.7 79 296-390 4-91 (254)
492 PRK06128 oxidoreductase; Provi 68.8 31 0.00068 35.9 9.8 79 296-390 53-142 (300)
493 PRK15116 sulfur acceptor prote 68.6 19 0.00041 37.4 7.9 34 296-329 28-63 (268)
494 PRK08324 short chain dehydroge 68.4 26 0.00056 41.4 10.0 78 295-389 419-505 (681)
495 PF06460 NSP13: Coronavirus NS 68.4 24 0.00052 36.4 8.2 108 281-420 44-167 (299)
496 PRK07340 ornithine cyclodeamin 68.3 28 0.0006 36.8 9.2 63 279-341 106-171 (304)
497 PRK09496 trkA potassium transp 68.2 32 0.00069 38.1 10.2 68 300-388 2-71 (453)
498 PF03446 NAD_binding_2: NAD bi 68.1 23 0.0005 33.5 7.9 85 300-419 3-91 (163)
499 PRK00094 gpsA NAD(P)H-dependen 68.0 35 0.00076 35.8 10.1 101 300-422 3-105 (325)
500 COG4301 Uncharacterized conser 68.0 73 0.0016 32.8 11.4 107 296-420 77-191 (321)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-70 Score=561.88 Aligned_cols=308 Identities=44% Similarity=0.781 Sum_probs=292.0
Q ss_pred hhhhhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 006731 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 258 ~d~~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~ 337 (633)
.++.||.+|+++++|++||+|.+|+.+|+.+|.+|..++++++|||||||||+||+|+|++||++|+|||.|..+ +.|+
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~ 99 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFAR 99 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHH
Confidence 577999999999999999999999999999999999999999999999999999999999999999999999977 6999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcE
Q 006731 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (633)
Q Consensus 338 ~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~ 417 (633)
++++.|++. +.|++++|+++++. +|.+++|+||||||||+|++|+|++++|+|++++|+|||.
T Consensus 100 ~iv~~N~~~-------------~ii~vi~gkvEdi~----LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~ 162 (346)
T KOG1499|consen 100 KIVKDNGLE-------------DVITVIKGKVEDIE----LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGL 162 (346)
T ss_pred HHHHhcCcc-------------ceEEEeecceEEEe----cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCce
Confidence 999999998 89999999999998 8889999999999999999999999999999999999999
Q ss_pred EEeecceeEEEEecCC---CCCccccccccCccccccchhhhhhhCCCCeEEEcCCCCccCCCeeEEEeeCCCCCCCCce
Q 006731 418 ILPDTATMFVAGFGRG---GTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQTFDLATMKHDEVD 494 (633)
Q Consensus 418 lip~~~t~~~~~~~~~---~~~~~~w~~vyG~d~s~~~~~~~~e~~~~p~v~~~~~~~lls~p~~i~~~Dl~~~~~~~~~ 494 (633)
++|+.|+++++++++. ...+.||+++|||+|+|+.+....+ |+++++++.+++++|+.++++|+.+++.+++.
T Consensus 163 i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e----~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~ 238 (346)
T KOG1499|consen 163 IYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKIAIKE----PLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLS 238 (346)
T ss_pred EccccceEEEEeccCchhhhhhcCccccccccchhhhhhhhhcc----cceeccChhHhcccceeeEEeeeeeeecccee
Confidence 9999999999999988 5667899999999999999988888 99999999999999999999999999999999
Q ss_pred eeEEEEEEeeeCCCCCCccccccCcceeEEEEEEEEeeeccccCCCCCEEEecCCCCCCCCccceEEecCCceecCCCCe
Q 006731 495 FTTSVELEPKLGDSTSNSTELRSTSTWCYGIVLWFDAGFTSRFCKEKPVVLSTSPYTPKTHWSQTIITFREPIALALGNL 574 (633)
Q Consensus 495 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~g~~~wFd~~f~~~~~~~~~v~lST~P~~~~thW~Q~v~~l~~pi~v~~G~~ 574 (633)
|+++|++++++. +.+|||++|||+.|+.+.+ ..++.|||||.+|+||||||||+|++|+.|++|+.
T Consensus 239 F~s~f~l~v~r~-------------~~i~g~v~yFDv~F~~~~~-~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~ 304 (346)
T KOG1499|consen 239 FTSPFKLKVTRN-------------GYLHAFVAYFDVEFTGCHG-KKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGED 304 (346)
T ss_pred eccceEEEEccC-------------ceEEEEEEEEEEeeccCCC-CCcceeecCCCCCCceeeeEEEEecCccceecCce
Confidence 999999999999 9999999999999996221 27899999999999999999999999999999999
Q ss_pred EEEeecccCCCCCCcceeeEEEEEeeCCcc-eEEEEEEEEeeeCC
Q 006731 575 GADGSAAVGTDACPARRIHLRVSIARGAVH-RSIDISMETAGVGP 618 (633)
Q Consensus 575 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~i~~~~~~~~~ 618 (633)
|.| .|.+.++.++ |.++|++.|...+.
T Consensus 305 i~g-----------------~it~~~~~~~~R~l~~~l~~~~~~~ 332 (346)
T KOG1499|consen 305 ITG-----------------TITMKPNKKNNRDLDISLSLNFKGQ 332 (346)
T ss_pred EEE-----------------EEEEeeCCCCCccceEEEEEecCCc
Confidence 988 6677777765 99999999988776
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=1.7e-51 Score=413.17 Aligned_cols=287 Identities=36% Similarity=0.593 Sum_probs=263.8
Q ss_pred hhhhhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 006731 258 VNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 258 ~d~~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~ 337 (633)
-...||..|+.+..++.|++|.+|+..|.+||+.|...+++++|||||||+|+|++|+|++||++|||||.|+ |++.|+
T Consensus 138 SA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~ 216 (517)
T KOG1500|consen 138 SASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYAR 216 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHH
Confidence 3558999999999999999999999999999999999999999999999999999999999999999999997 667999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcE
Q 006731 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (633)
Q Consensus 338 ~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~ 417 (633)
+.++.|.+. ++|++|.|+++++. +| +++||||||+|||.|.+|.|+.+.+.++ ++|+|.|.
T Consensus 217 ~Lv~~N~~~-------------~rItVI~GKiEdie----LP-Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~Gk 277 (517)
T KOG1500|consen 217 KLVASNNLA-------------DRITVIPGKIEDIE----LP-EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGK 277 (517)
T ss_pred HHHhcCCcc-------------ceEEEccCcccccc----Cc-hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCc
Confidence 999999887 99999999999999 76 8999999999999999999999999998 99999999
Q ss_pred EEeecceeEEEEecCC------CCCccccc--cccCccccccchhhhhhhCCCCeEEEcCCCCccCCCeeEEEeeCCCCC
Q 006731 418 ILPDTATMFVAGFGRG------GTSLPFWE--NVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQTFDLATMK 489 (633)
Q Consensus 418 lip~~~t~~~~~~~~~------~~~~~~w~--~vyG~d~s~~~~~~~~e~~~~p~v~~~~~~~lls~p~~i~~~Dl~~~~ 489 (633)
++|....++++|+.+. ..+..||. ++||+|++.+......+.++.|+|+.+++..++..++ .+.+||..++
T Consensus 278 MfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv-~h~~dF~~~k 356 (517)
T KOG1500|consen 278 MFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSV-FHVIDFLNMK 356 (517)
T ss_pred ccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccch-Hhhhhhhhcc
Confidence 9999999999999987 56788996 5899999999999999999999999999987777664 5688999999
Q ss_pred CCCc-eeeEEEEEEeeeCCCCCCccccccCcceeEEEEEEEEeeeccccCCCCCEEEecCCCCCCCCccceEEecCCcee
Q 006731 490 HDEV-DFTTSVELEPKLGDSTSNSTELRSTSTWCYGIVLWFDAGFTSRFCKEKPVVLSTSPYTPKTHWSQTIITFREPIA 568 (633)
Q Consensus 490 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~g~~~wFd~~f~~~~~~~~~v~lST~P~~~~thW~Q~v~~l~~pi~ 568 (633)
.+++ .+..+++|.+... |.+||+++|||+.|++ ..-.+.+||+|.+|.|||.|...+|..||.
T Consensus 357 Eedlh~i~iPlkF~~~~~-------------g~iHGLAfWFDV~F~G---S~~~~wlsTap~apltHwyqvrCll~~Pi~ 420 (517)
T KOG1500|consen 357 EEDLHEIDIPLKFHALQC-------------GRIHGLAFWFDVLFDG---STVQVWLSTAPTAPLTHWYQVRCLLSQPIF 420 (517)
T ss_pred cchheeecccceehhhhh-------------cceeeeeeEEEEEecc---ceEEEccCCCCCCCcccceeeeeeccCchh
Confidence 9998 4566777776665 9999999999999994 556789999999999999999999999999
Q ss_pred cCCCCeEEEeecc
Q 006731 569 LALGNLGADGSAA 581 (633)
Q Consensus 569 v~~G~~i~~~~~~ 581 (633)
|++|++|+|++-.
T Consensus 421 v~aGq~ltGr~~L 433 (517)
T KOG1500|consen 421 VKAGQTLTGRLLL 433 (517)
T ss_pred hhcCCeeeeeEEE
Confidence 9999999996543
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=7.1e-43 Score=381.42 Aligned_cols=275 Identities=29% Similarity=0.417 Sum_probs=218.6
Q ss_pred hhHHhhcChhhhHHHHHHHHhCCCC--------CCCCEEEEECCCcchHHHHHHHcC-----CCeEEEEeCCHHHHHHHH
Q 006731 271 IHREMISDKVRTDSYRQAILENPSL--------MKGAVVMDIGCGTGILSLFAAQAG-----ASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 271 ~h~~mL~D~~R~~~y~~aI~~~~~~--------~~~~~VLDVGcGtG~lsl~~a~aG-----a~~V~aVD~S~~~~~~A~ 337 (633)
....+-+|+++++.|.+||..++.. .++++|||||||+|+|+++++++| +.+|||||.|+.++..++
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 3445568999999999999764321 136899999999999999999997 679999999999986777
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcE
Q 006731 338 QIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (633)
Q Consensus 338 ~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~ 417 (633)
++++.|++. ++|+++++|++++. +| +++|||||||||+++.+| +.+.+|.++.|+|||||+
T Consensus 232 ~~v~~n~w~-------------~~V~vi~~d~r~v~----lp-ekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 232 KRVNANGWG-------------DKVTVIHGDMREVE----LP-EKVDIIVSELLGSFGDNE-LSPECLDAADRFLKPDGI 292 (448)
T ss_dssp HHHHHTTTT-------------TTEEEEES-TTTSC----HS-S-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEEEEE
T ss_pred HHHHhcCCC-------------CeEEEEeCcccCCC----CC-CceeEEEEeccCCccccc-cCHHHHHHHHhhcCCCCE
Confidence 887899998 99999999999998 65 799999999999999988 556789999999999999
Q ss_pred EEeecceeEEEEecCCCCCccccccccCccccccchhhhhhhCCCCeEEEcCCCCccCCC-eeEEEeeCCCCC---CCCc
Q 006731 418 ILPDTATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDS-VVLQTFDLATMK---HDEV 493 (633)
Q Consensus 418 lip~~~t~~~~~~~~~~~~~~~w~~vyG~d~s~~~~~~~~e~~~~p~v~~~~~~~lls~p-~~i~~~Dl~~~~---~~~~ 493 (633)
+||+.+++|++|+.++ ..|.++....- ...+..|.+..+.+...++.+ ..+++|++.+.. ..+.
T Consensus 293 ~IP~~~t~ylaPiss~----~l~~~~~~~~~--------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~ 360 (448)
T PF05185_consen 293 MIPSSYTSYLAPISSP----KLYQEVRNWWN--------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDN 360 (448)
T ss_dssp EESSEEEEEEEEEE-H----HHHHHHHHHHG--------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGS
T ss_pred EeCcchhhEEEEeeCH----HHHHHHHhhcc--------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhh
Confidence 9999999999999865 22322111000 223344888888888999999 899999998876 4567
Q ss_pred eeeEEEEEEeeeCCCCCCccccccCcceeEEEEEEEEeeeccccCCCCCEEEecCCCC----CCCCccceEEecCCceec
Q 006731 494 DFTTSVELEPKLGDSTSNSTELRSTSTWCYGIVLWFDAGFTSRFCKEKPVVLSTSPYT----PKTHWSQTIITFREPIAL 569 (633)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~g~~~wFd~~f~~~~~~~~~v~lST~P~~----~~thW~Q~v~~l~~pi~v 569 (633)
.+...++|+++++ |++|||++|||+.|++ .|.|||+|.. +.|||+|++|||++|+.|
T Consensus 361 ~r~~~~~F~i~~~-------------g~vhGfagwFd~~Ly~------~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V 421 (448)
T PF05185_consen 361 SRSSELEFKIKRD-------------GVVHGFAGWFDAVLYG------DVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYV 421 (448)
T ss_dssp EEEEEEEEEBSSS-------------EEEEEEEEEEEEEEEC------SEEEESSTTS---TT--TTEEEEEEEEEEEEE
T ss_pred heeeeEEEeeCCC-------------cEEEEEEEEEEEEeeC------CeeeecCCCcCCCCCCCeEeEEEEEecCcEEE
Confidence 8889999999988 9999999999999983 4999999998 789999999999999999
Q ss_pred CCCCeEEEeecccCCCCCCcceeeEEEEEeeCCcceEEEEEEEEe
Q 006731 570 ALGNLGADGSAAVGTDACPARRIHLRVSIARGAVHRSIDISMETA 614 (633)
Q Consensus 570 ~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~~~ 614 (633)
++|++| .++|+|..+++.+++++..+
T Consensus 422 ~~g~~I-------------------~~~i~R~~~~~~vWYEW~v~ 447 (448)
T PF05185_consen 422 KAGDEI-------------------SVHIWRKTDDRKVWYEWSVE 447 (448)
T ss_dssp -TT-EE-------------------EEEEEEECCSTCEEEEEEEE
T ss_pred CCCCEE-------------------EEEEEEEcCCCcEEEEEEEe
Confidence 999999 55678899999999887653
No 4
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=99.97 E-value=1.3e-31 Score=268.71 Aligned_cols=153 Identities=29% Similarity=0.610 Sum_probs=132.6
Q ss_pred CCccchhhhhHHhhhccC--cccccccCcCccCCCCCCCCCCCCCceeecCCCCCCCHHHHHHHhhhhcCcchhhhhccc
Q 006731 4 NNKPETEETRKRIEENHE--EEEEEEETEQDWGDWSEDDGGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTEL 81 (633)
Q Consensus 4 ~n~~~~~~~~~~~~~~~~--~~~~~~~~~~~W~dw~~~~~e~~~~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~ 81 (633)
|||+|.||+|.......+ -.++..++|++|+||.+++ ++...++||||++...++..+++||+..|.|||.+++..+
T Consensus 236 INY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~-a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~ 314 (423)
T KOG2482|consen 236 INYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD-AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDY 314 (423)
T ss_pred EeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC-CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhcccc
Confidence 799999999998777652 2223455667899999885 3445599999999999999999999999999999999999
Q ss_pred cccccCceeeehhhHhhcccccccccCCccCCHHHHHHHHHH-hcc-cccccCCCCCcCcccccccCcccccccCCCC
Q 006731 82 RLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE-AYN-LKETKLRWDKEKYLKPFMQDDKLLYSFGEDE 157 (633)
Q Consensus 82 ~ld~Y~~IKlINyiR~~~~~~~C~~C~~~~~~~~~~~~Hm~~-~~~-~~~~~~~w~~d~yl~Pv~e~D~lL~~ld~~~ 157 (633)
+|||||+||+|||||++++..+|+.|...|.....++.||.+ ++. ..++...||..+||+|++|||+|||++|+..
T Consensus 315 ~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e~k~l~i~pd~~iwD~~e~~fP~~eND~lLC~ldD~l 392 (423)
T KOG2482|consen 315 SLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVEDKHLSILPDEVIWDPREFFFPYIENDGLLCVLDDSL 392 (423)
T ss_pred ccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccccccccccCcccccCchhhccceecCCceEEEecccc
Confidence 999999999999999999999999999999988899999986 443 2324789999999999999999999998753
No 5
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.3e-26 Score=246.26 Aligned_cols=284 Identities=21% Similarity=0.231 Sum_probs=222.5
Q ss_pred hhcChhhhHHHHHHHHhCCCCC-----C--CCEEEEECCCcchHHHHHHHc---C--CCeEEEEeCCHHHHHHHHHHHHh
Q 006731 275 MISDKVRTDSYRQAILENPSLM-----K--GAVVMDIGCGTGILSLFAAQA---G--ASRVIAVEASEKMAAVATQIAKD 342 (633)
Q Consensus 275 mL~D~~R~~~y~~aI~~~~~~~-----~--~~~VLDVGcGtG~lsl~~a~a---G--a~~V~aVD~S~~~~~~A~~~~~~ 342 (633)
.-+|++.+..|.+||..++... + -.+|+-+|+|.|.|.-...++ - .-++||||.+|.++-. .++.+.
T Consensus 338 FEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivt-L~~~n~ 416 (649)
T KOG0822|consen 338 FEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVT-LQNRNF 416 (649)
T ss_pred hhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhh-hhhhch
Confidence 3379999999999998754322 1 247999999999886665554 1 2379999999999844 444544
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 343 NDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 343 ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
..+. ++|++|.+|++.+. -|.++.|++|||.+|.|..+|- -+..|+.+.++|||+|+.||+.
T Consensus 417 ~~W~-------------~~Vtii~~DMR~w~----ap~eq~DI~VSELLGSFGDNEL-SPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 417 ECWD-------------NRVTIISSDMRKWN----APREQADIIVSELLGSFGDNEL-SPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhhc-------------CeeEEEeccccccC----CchhhccchHHHhhccccCccC-CHHHHHHHHhhcCCCceEccch
Confidence 5555 99999999999998 4458999999999999988774 4679999999999999999999
Q ss_pred ceeEEEEecCCCCCccccccccCccccccchhhhhhhCCCCeEEEcCCCCccCCCeeEEEeeCCCC-CCCCceeeEEEEE
Q 006731 423 ATMFVAGFGRGGTSLPFWENVYGFTMSCVGREVVQDAAGIPIVDVVDDHDLVTDSVVLQTFDLATM-KHDEVDFTTSVEL 501 (633)
Q Consensus 423 ~t~~~~~~~~~~~~~~~w~~vyG~d~s~~~~~~~~e~~~~p~v~~~~~~~lls~p~~i~~~Dl~~~-~~~~~~~~~~~~l 501 (633)
.+.|++|+..+ .+|.++....- ..++..|.|..+.+...++++..+++|..... ..-+..+....+|
T Consensus 479 YtSyi~PImS~----~l~q~v~a~~~--------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF 546 (649)
T KOG0822|consen 479 YTSYIAPIMSP----KLYQEVKATND--------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEF 546 (649)
T ss_pred hhhhhcccccH----HHHHHHHhcCC--------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEE
Confidence 99999999754 34444321110 12445599999999999999999999998776 3334456678888
Q ss_pred EeeeCCCCCCccccccCcceeEEEEEEEEeeeccccCCCCCEEEecCCCCC---CCCccceEEecCCceecCCCCeEEEe
Q 006731 502 EPKLGDSTSNSTELRSTSTWCYGIVLWFDAGFTSRFCKEKPVVLSTSPYTP---KTHWSQTIITFREPIALALGNLGADG 578 (633)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~g~~~g~~~wFd~~f~~~~~~~~~v~lST~P~~~---~thW~Q~v~~l~~pi~v~~G~~i~~~ 578 (633)
++..+ |.+|||++|||+.++ ++|.||+-|.+. ..+|.+.+|||++|+.|.+|++|
T Consensus 547 ~~~~~-------------~~lHGFaGYFd~~LY------kdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~l--- 604 (649)
T KOG0822|consen 547 KVKSN-------------GVLHGFAGYFDAVLY------KDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTL--- 604 (649)
T ss_pred ecCCC-------------ceEeecchhhhhhhh------heeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeE---
Confidence 88888 999999999999999 579999999764 35899999999999999999999
Q ss_pred ecccCCCCCCcceeeEEEEEeeCCcceEEEEEEEEeeeCCCCCceeeee
Q 006731 579 SAAVGTDACPARRIHLRVSIARGAVHRSIDISMETAGVGPDGQKRSWPA 627 (633)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~~~~~~ 627 (633)
.|.|+|-.+..++++++.....---+...+|++
T Consensus 605 ----------------sv~~wR~~d~~kVWYEW~v~~~~~l~~~~~s~i 637 (649)
T KOG0822|consen 605 ----------------SVHFWRCVDSTKVWYEWSVESFIYLMKPSSSEI 637 (649)
T ss_pred ----------------EEEEEEEeCCceeEEEEEeeeeecccCCCcccc
Confidence 567788888888888887764333333444443
No 6
>PTZ00357 methyltransferase; Provisional
Probab=99.87 E-value=4.1e-21 Score=208.85 Aligned_cols=306 Identities=18% Similarity=0.206 Sum_probs=206.4
Q ss_pred cChhhhHHHHHHHHhCCCC---------------------------------CCCCEEEEECCCcchHHHHHHHc----C
Q 006731 277 SDKVRTDSYRQAILENPSL---------------------------------MKGAVVMDIGCGTGILSLFAAQA----G 319 (633)
Q Consensus 277 ~D~~R~~~y~~aI~~~~~~---------------------------------~~~~~VLDVGcGtG~lsl~~a~a----G 319 (633)
+|++.++.|.+||...+.. ....+|+-||+|.|.|.-.+.++ |
T Consensus 647 KDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~g 726 (1072)
T PTZ00357 647 RDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALG 726 (1072)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcC
Confidence 7999999999999775411 01136999999999886666555 3
Q ss_pred C-CeEEEEeCCHHHHHHHHHHHH-hCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc-----ccC--CCcccEEEEec
Q 006731 320 A-SRVIAVEASEKMAAVATQIAK-DNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-----QIQ--PHSVDVLVSEW 390 (633)
Q Consensus 320 a-~~V~aVD~S~~~~~~A~~~~~-~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~-----~l~--~~~~DvIvse~ 390 (633)
. -+|+|||.++.++...+.+.+ ...+. +....++++|++|.+|++.+.... ..| .+++||||||+
T Consensus 727 vkVrIyAVEKNPpAA~~tllr~~N~eeW~------n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSEL 800 (1072)
T PTZ00357 727 VRLRIFAIEKNLPAAAFTRMRWANDPEWT------QLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSEL 800 (1072)
T ss_pred CcEEEEEEecCcchHHHHHHHHhcccccc------cccccCCCeEEEEeCcccccccccccccccccccccccceehHhh
Confidence 3 389999999664434444432 22331 111223477999999999986210 001 14899999999
Q ss_pred ccccccChhhHHHHHHHHhhcccC----Cc-------EEEeecceeEEEEecCCCCCccccccc-----cCccccccchh
Q 006731 391 MGYCLLYESMLSSVLFARDQWLKP----GG-------AILPDTATMFVAGFGRGGTSLPFWENV-----YGFTMSCVGRE 454 (633)
Q Consensus 391 mg~~L~~e~~l~~vl~a~~r~Lkp----gG-------~lip~~~t~~~~~~~~~~~~~~~w~~v-----yG~d~s~~~~~ 454 (633)
+|+|..+|- -+..|+.+.++||+ +| +.||.+++.|++|+..+ .+|.++ .|+-.....-.
T Consensus 801 LGSFGDNEL-SPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSp----KLya~V~~~~~~gltvP~p~c~ 875 (1072)
T PTZ00357 801 LGSLGDNEL-SPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSA----TFDAAVTEAAVKGLTVPPPGCH 875 (1072)
T ss_pred hcccccccC-CHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccH----HHHHHHHHhhhcccccCCcccc
Confidence 999988874 46788888888875 55 59999999999999865 234332 12111100000
Q ss_pred -hhhhhCCCCeEEEcCCCCccCCCeeEEEeeCCCCCC-----------------CCceeeEEEEEEeeeCCCCCCccccc
Q 006731 455 -VVQDAAGIPIVDVVDDHDLVTDSVVLQTFDLATMKH-----------------DEVDFTTSVELEPKLGDSTSNSTELR 516 (633)
Q Consensus 455 -~~~e~~~~p~v~~~~~~~lls~p~~i~~~Dl~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~ 516 (633)
.....+..++|..+.....++.|.++++|...+... .+..+.+.+.|++..+
T Consensus 876 ~~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d---------- 945 (1072)
T PTZ00357 876 DHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPC---------- 945 (1072)
T ss_pred ccchhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCC----------
Confidence 000112347787777777889999999999976542 1235667788888877
Q ss_pred cCcceeEEEEEEEEeeeccccCCCCCEEEecCCCCCCC---CccceEEecC---CceecCCCCeEEEeecccCCCCCCcc
Q 006731 517 STSTWCYGIVLWFDAGFTSRFCKEKPVVLSTSPYTPKT---HWSQTIITFR---EPIALALGNLGADGSAAVGTDACPAR 590 (633)
Q Consensus 517 ~~~g~~~g~~~wFd~~f~~~~~~~~~v~lST~P~~~~t---hW~Q~v~~l~---~pi~v~~G~~i~~~~~~~~~~~~~~~ 590 (633)
++||||++||++.|+.. .....|.|||.|..... +|++.+|||+ .+..++.|+.-.- ...
T Consensus 946 ---~vlHGFAGYFdAvLYkD-Vt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~----------~~~ 1011 (1072)
T PTZ00357 946 ---GRCCGLAGYFSAVLYQS-ATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAE----------ESR 1011 (1072)
T ss_pred ---cceeeeeeEEEEEeecC-CCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccccccc----------ccc
Confidence 99999999999999940 00124889999986532 8999999999 6666677763321 112
Q ss_pred eeeEEEEEeeCC--cceEEEEEEEEeeeC
Q 006731 591 RIHLRVSIARGA--VHRSIDISMETAGVG 617 (633)
Q Consensus 591 ~~~~~~~~~~~~--~~r~~~i~~~~~~~~ 617 (633)
.+.+++.+.|-. +.+.+++++..+..+
T Consensus 1012 ~~~i~~~l~Rr~~~~e~rVwYew~v~~~~ 1040 (1072)
T PTZ00357 1012 MVAIRVQLDRRTSLAEQRVWYEWSVTYGD 1040 (1072)
T ss_pred ceeEEEeeeeccccccceEEEEEEEeech
Confidence 344577777877 568899888875544
No 7
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.86 E-value=1.4e-21 Score=203.36 Aligned_cols=255 Identities=25% Similarity=0.298 Sum_probs=191.4
Q ss_pred HHhhcChhhhHHHHHHHHhCCCCCC-----C-CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCC
Q 006731 273 REMISDKVRTDSYRQAILENPSLMK-----G-AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFW 346 (633)
Q Consensus 273 ~~mL~D~~R~~~y~~aI~~~~~~~~-----~-~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~ 346 (633)
.+||+|..|+..|+..|.......+ | ..|||||+|||+||++++++||..|||+|.-..|.+.|+++...||++
T Consensus 36 ~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 36 LDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred HHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 4799999999999999987643222 2 359999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeE
Q 006731 347 WDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 347 ~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
++|++|.....++.. .+..+.||++.+.+..-|.+|+.++++-+|.++++++|...+|.++|+|
T Consensus 116 -------------dkI~vInkrStev~v---g~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY 179 (636)
T KOG1501|consen 116 -------------DKINVINKRSTEVKV---GGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVY 179 (636)
T ss_pred -------------cceeeeccccceeee---cCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEE
Confidence 999999999999883 2345699999999988899999999999999999999999999999999
Q ss_pred EEEecCCCCCccccccc--------cCccccccchhhhhhhCCCCeE------EEcC-CCCccCCCeeEEEeeCCCCCCC
Q 006731 427 VAGFGRGGTSLPFWENV--------YGFTMSCVGREVVQDAAGIPIV------DVVD-DHDLVTDSVVLQTFDLATMKHD 491 (633)
Q Consensus 427 ~~~~~~~~~~~~~w~~v--------yG~d~s~~~~~~~~e~~~~p~v------~~~~-~~~lls~p~~i~~~Dl~~~~~~ 491 (633)
+.++++. .+.-|.+. .|+.+.+.+ +...++.+.+ +..+ ...+|+++.+++.+||..-.
T Consensus 180 ~qlVES~--~l~~~ndl~~~~~~ts~gv~~~p~~---lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~-- 252 (636)
T KOG1501|consen 180 CQLVEST--FLCNLNDLRNNEAKTSDGVRLVPPG---LESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWI-- 252 (636)
T ss_pred EEEehhh--hhhhhhccccccccccCCcccCCCc---cccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhh--
Confidence 9999854 22223322 222221111 1112222222 2221 45689999999999997421
Q ss_pred CceeeEEEEEEeeeCCCCCCccccccCcceeEEEEEEEEeeeccccCCCCCEEEecCCCCC---------CCCccceEEe
Q 006731 492 EVDFTTSVELEPKLGDSTSNSTELRSTSTWCYGIVLWFDAGFTSRFCKEKPVVLSTSPYTP---------KTHWSQTIIT 562 (633)
Q Consensus 492 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~g~~~wFd~~f~~~~~~~~~v~lST~P~~~---------~thW~Q~v~~ 562 (633)
+..+...+..+. .+-..|++..+..|||+.|+ ..+..-+..+|... ..||-|++.+
T Consensus 253 ~s~s~~~~~r~~-----------va~~Sg~~~~~l~wwdi~mD----~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y 317 (636)
T KOG1501|consen 253 DSNSEIEELRPP-----------VAVHSGPLRSNLLWWDISMD----QFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPY 317 (636)
T ss_pred hcchhhhhhcCc-----------ccccccchhheeeeeeeeec----cCcceEEEecceecCCChHHHHHHHHHHHhcCC
Confidence 111111111111 11223999999999999998 45567788888754 2399999999
Q ss_pred cCC
Q 006731 563 FRE 565 (633)
Q Consensus 563 l~~ 565 (633)
+++
T Consensus 318 ~~~ 320 (636)
T KOG1501|consen 318 PKE 320 (636)
T ss_pred Chh
Confidence 885
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=8.3e-18 Score=166.28 Aligned_cols=152 Identities=28% Similarity=0.349 Sum_probs=126.3
Q ss_pred ccCChHHHhhhhh---hhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEE
Q 006731 248 LKLSAKDIKKVNE---SYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVI 324 (633)
Q Consensus 248 ~~~~~~~~~~~d~---~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~ 324 (633)
.+++..+.+.+++ .||+.++.+...+.+ ++.|...+...+..+.. .+|++|||||||-|+||..+|+.|+ .|+
T Consensus 10 ~~id~~e~~~F~~la~~wwd~~g~f~~LH~~--N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~Ga-~Vt 85 (243)
T COG2227 10 QNVDYKELDKFEALASRWWDPEGEFKPLHKI--NPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGA-SVT 85 (243)
T ss_pred ccCCHHHHHHHHHHHhhhcCCCCceeeeeee--ccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHCCC-eeE
Confidence 3566667766665 899998888776655 77777766665554333 7899999999999999999999997 999
Q ss_pred EEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHH
Q 006731 325 AVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSV 404 (633)
Q Consensus 325 aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~v 404 (633)
|+|+++.+++.|+..+..+++. |.+.+..++++. ...++||+|+|.-| +.|-.++..+
T Consensus 86 giD~se~~I~~Ak~ha~e~gv~---------------i~y~~~~~edl~----~~~~~FDvV~cmEV---lEHv~dp~~~ 143 (243)
T COG2227 86 GIDASEKPIEVAKLHALESGVN---------------IDYRQATVEDLA----SAGGQFDVVTCMEV---LEHVPDPESF 143 (243)
T ss_pred EecCChHHHHHHHHhhhhcccc---------------ccchhhhHHHHH----hcCCCccEEEEhhH---HHccCCHHHH
Confidence 9999999999999999998873 889999999998 44589999999433 5666788899
Q ss_pred HHHHhhcccCCcEEEeeccee
Q 006731 405 LFARDQWLKPGGAILPDTATM 425 (633)
Q Consensus 405 l~a~~r~LkpgG~lip~~~t~ 425 (633)
+.++.+++||||.++.++.+-
T Consensus 144 ~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 144 LRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred HHHHHHHcCCCcEEEEecccc
Confidence 999999999999999888663
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.71 E-value=1.8e-16 Score=167.30 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=123.8
Q ss_pred cCChHHHhhhhh---hhhcCCCCchhhHHhhcChhhhHHHHHHHHhCC-------CCCCCCEEEEECCCcchHHHHHHHc
Q 006731 249 KLSAKDIKKVNE---SYFGSYSSFGIHREMISDKVRTDSYRQAILENP-------SLMKGAVVMDIGCGTGILSLFAAQA 318 (633)
Q Consensus 249 ~~~~~~~~~~d~---~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~-------~~~~~~~VLDVGcGtG~lsl~~a~a 318 (633)
++.+.+++++++ .||+.++.+..++.| ++.|.....+.+.+.. ...++.+|||||||+|.++..+++.
T Consensus 75 s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~--N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~ 152 (322)
T PLN02396 75 SLNEDELAKFSAIADTWWHSEGPFKPLHQM--NPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARM 152 (322)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCchHHHHh--ChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHc
Confidence 567778777665 899999999888877 7788777776664432 1346789999999999999999998
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccCh
Q 006731 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE 398 (633)
Q Consensus 319 Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e 398 (633)
|+ +|+|||.++.+++.|++++...+.. .+|+++++++++++ ++.++||+|++..+ +.+-
T Consensus 153 g~-~V~GID~s~~~i~~Ar~~~~~~~~~-------------~~i~~~~~dae~l~----~~~~~FD~Vi~~~v---LeHv 211 (322)
T PLN02396 153 GA-TVTGVDAVDKNVKIARLHADMDPVT-------------STIEYLCTTAEKLA----DEGRKFDAVLSLEV---IEHV 211 (322)
T ss_pred CC-EEEEEeCCHHHHHHHHHHHHhcCcc-------------cceeEEecCHHHhh----hccCCCCEEEEhhH---HHhc
Confidence 87 8999999999999999887766554 68999999999887 56679999998433 4444
Q ss_pred hhHHHHHHHHhhcccCCcEEEeecc
Q 006731 399 SMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 399 ~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
..+..++.++.++|||||.++.++.
T Consensus 212 ~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 212 ANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 5678899999999999999997653
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.66 E-value=8.2e-16 Score=136.98 Aligned_cols=107 Identities=32% Similarity=0.451 Sum_probs=89.4
Q ss_pred CCCEEEEECCCcchHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc-cccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQ--AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-EELG 373 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~--aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~-e~l~ 373 (633)
|+.+|||||||+|.+++.+++ .++ +|+|||+|+.+++.|++++...+.. ++|+++++|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-------------~~i~~~~~d~~~~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLS-------------DRITFVQGDAEFDPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTT-------------TTEEEEESCCHGGTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCC-------------CCeEEEECccccCcc
Confidence 578999999999999999999 455 8999999999999999999777776 9999999999 4343
Q ss_pred cccccCCCcccEEEEec-ccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 374 ESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~-mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. .++||+|++.. ....+........++..+.+.|+|||+++.+.
T Consensus 67 ----~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 ----F-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ----T-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----c-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 36799999976 23334433567889999999999999999765
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=7.1e-16 Score=155.04 Aligned_cols=114 Identities=30% Similarity=0.494 Sum_probs=101.2
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
|++++.......+|.+|||||||||.+++.+++. |..+|+|+|+|+.|++.|+++....+.. + |+
T Consensus 39 Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-------------~-i~ 104 (238)
T COG2226 39 WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-------------N-VE 104 (238)
T ss_pred HHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-------------c-eE
Confidence 5555555555558999999999999999999998 6679999999999999999999987774 4 99
Q ss_pred EEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++++|+++++ +++.+||+|. ++|.|.+-.+.+.+|.++.|+|||||+++
T Consensus 105 fv~~dAe~LP----f~D~sFD~vt---~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 105 FVVGDAENLP----FPDNSFDAVT---ISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred EEEechhhCC----CCCCccCEEE---eeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 9999999999 9999999999 46778888899999999999999999877
No 12
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.65 E-value=4e-16 Score=155.20 Aligned_cols=154 Identities=24% Similarity=0.308 Sum_probs=122.4
Q ss_pred cCChHHHhhhhh---hhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCC-CCC------CCEEEEECCCcchHHHHHHHc
Q 006731 249 KLSAKDIKKVNE---SYFGSYSSFGIHREMISDKVRTDSYRQAILENPS-LMK------GAVVMDIGCGTGILSLFAAQA 318 (633)
Q Consensus 249 ~~~~~~~~~~d~---~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~-~~~------~~~VLDVGcGtG~lsl~~a~a 318 (633)
++..++++.+.. .||+.-+.+...+.| +..|....++-++++.. ..+ |++|||||||+|+||..+||.
T Consensus 33 si~~~eV~~f~~la~~wwd~~g~~~~Lh~m--n~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArl 110 (282)
T KOG1270|consen 33 SIDVDEVKKFQALAFTWWDEEGVRHPLHSM--NQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARL 110 (282)
T ss_pred cccHHHHHHHHHhcccccccccchhhhhhc--cchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhh
Confidence 455566766654 799998888888888 78888888888877652 234 478999999999999999999
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccCh
Q 006731 319 GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE 398 (633)
Q Consensus 319 Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e 398 (633)
|+ .|+|||+++.|++.|++..+.+... ......++.+.+.+++.+. ++||+|||.-+ +.|-
T Consensus 111 ga-~V~GID~s~~~V~vA~~h~~~dP~~--------~~~~~y~l~~~~~~~E~~~-------~~fDaVvcsev---leHV 171 (282)
T KOG1270|consen 111 GA-QVTGIDASDDMVEVANEHKKMDPVL--------EGAIAYRLEYEDTDVEGLT-------GKFDAVVCSEV---LEHV 171 (282)
T ss_pred CC-eeEeecccHHHHHHHHHhhhcCchh--------ccccceeeehhhcchhhcc-------cccceeeeHHH---HHHH
Confidence 98 9999999999999999986554432 2222346888888888876 45999998543 5666
Q ss_pred hhHHHHHHHHhhcccCCcEEEeecc
Q 006731 399 SMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 399 ~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
.++..++..+.++|||||.++.++.
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeeh
Confidence 7899999999999999999997663
No 13
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.59 E-value=6.9e-15 Score=138.82 Aligned_cols=138 Identities=29% Similarity=0.380 Sum_probs=122.1
Q ss_pred hhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCC
Q 006731 270 GIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDR 349 (633)
Q Consensus 270 ~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~ 349 (633)
.+|..+|.|..|...|..+|.+.. ..++.|+|+|+|+||+++|++ |++|+|||.+|..++.|.++++-+|+
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~---- 79 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD---- 79 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC----
Confidence 579999999999999999998853 379999999999999999998 88999999999999999999988888
Q ss_pred CCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEEEE
Q 006731 350 PQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAG 429 (633)
Q Consensus 350 ~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~~~ 429 (633)
.+++++.||+.+.. + +..|+|+||+++..|..|...+ ++.++..+||.++.++|+....-+.|
T Consensus 80 ----------~n~evv~gDA~~y~----f--e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~p 142 (252)
T COG4076 80 ----------VNWEVVVGDARDYD----F--ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANP 142 (252)
T ss_pred ----------cceEEEeccccccc----c--cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCc
Confidence 89999999999988 5 6899999999999888877654 66777779999999999987776666
Q ss_pred ecCC
Q 006731 430 FGRG 433 (633)
Q Consensus 430 ~~~~ 433 (633)
+..+
T Consensus 143 v~~~ 146 (252)
T COG4076 143 VRRP 146 (252)
T ss_pred cccC
Confidence 6543
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.57 E-value=4.6e-15 Score=150.12 Aligned_cols=111 Identities=29% Similarity=0.415 Sum_probs=82.1
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
.+.+.....+|.+|||||||||.++..+++. +. .+|+|+|+|+.|++.|+++++..+. .+|+++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--------------~~i~~v 103 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--------------QNIEFV 103 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----------------SEEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--------------CCeeEE
Confidence 3333334678899999999999999998876 43 5999999999999999999998876 689999
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++|+++++ +++++||+|++ .+++.+-.++..++.++.|+|||||.++
T Consensus 104 ~~da~~lp----~~d~sfD~v~~---~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 104 QGDAEDLP----FPDNSFDAVTC---SFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp E-BTTB------S-TT-EEEEEE---ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred EcCHHHhc----CCCCceeEEEH---HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 99999999 89999999996 4455555678899999999999999988
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1e-13 Score=136.95 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=89.1
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++.++.+++ .+++++.+|+.+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~--------------~~v~~~~~d~~~~~- 91 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL--------------DNLHTAVVDLNNLT- 91 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------CcceEEecChhhCC-
Confidence 45678999999999999999999987 999999999999999999988887 56889999998776
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++ ++||+|++..+.+++ ....+..++..+.++|+|||.++
T Consensus 92 ---~~-~~fD~I~~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 92 ---FD-GEYDFILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ---cC-CCcCEEEEecchhhC-CHHHHHHHHHHHHHHcCCCcEEE
Confidence 54 679999997654433 44567899999999999999965
No 16
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=4.7e-14 Score=146.79 Aligned_cols=111 Identities=27% Similarity=0.436 Sum_probs=87.2
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 006731 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (633)
Q Consensus 282 ~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~ 361 (633)
|..-.++|.+. ..+|++|||||||||+|++.+++.||++|+|+|+++.+++.|+++++.|++. ++
T Consensus 148 T~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-------------~~ 212 (295)
T PF06325_consen 148 TRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-------------DR 212 (295)
T ss_dssp HHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-------------TC
T ss_pred HHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-------------ee
Confidence 44455666654 5678999999999999999999999999999999999999999999999997 77
Q ss_pred EEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 362 I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
+.+. ...+ .+.++||+|+++.+.. .+..+...+.++|+|||.++.|
T Consensus 213 ~~v~--~~~~------~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 213 IEVS--LSED------LVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp EEES--CTSC------TCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEE
T ss_pred EEEE--Eecc------cccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEc
Confidence 7653 2222 2348999999997533 3456778889999999999954
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.50 E-value=2.5e-13 Score=137.14 Aligned_cols=118 Identities=28% Similarity=0.409 Sum_probs=97.1
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 006731 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (633)
Q Consensus 282 ~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~ 359 (633)
...+++.+.....+.++++|||+|||+|.++..+++. +. .+|+|+|+|+.+++.|+++++..++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------- 95 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-------------- 95 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--------------
Confidence 4455566666666778899999999999999999876 43 5999999999999999999887776
Q ss_pred CcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 360 ~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++++++++|+++++ ++.++||+|++.. .+.+......++..+.++|+|||.++.
T Consensus 96 ~~v~~~~~d~~~~~----~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 96 HNVELVHGNAMELP----FDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CceEEEEechhcCC----CCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 67999999999887 6778999999753 233445567899999999999999984
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.50 E-value=2.3e-13 Score=140.32 Aligned_cols=117 Identities=19% Similarity=0.294 Sum_probs=92.7
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCC
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~--ngl~~~~~~~~~~~~~~~ 360 (633)
+++.+.+...+.++.+|||||||||.++..+++. |. .+|+|+|+|+.|++.|+++... .+.. .
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~-------------~ 127 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCY-------------K 127 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccC-------------C
Confidence 4444444445677899999999999999998876 43 5899999999999999876531 1222 5
Q ss_pred cEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 361 ~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
+++++++++++++ +++++||+|++.. .+.+-..+..++.++.|.|||||.++..
T Consensus 128 ~i~~~~~d~~~lp----~~~~sfD~V~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 128 NIEWIEGDATDLP----FDDCYFDAITMGY---GLRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CeEEEEcccccCC----CCCCCEeEEEEec---ccccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 7999999999998 8888999999743 2444456788999999999999998854
No 19
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.48 E-value=2.2e-13 Score=116.74 Aligned_cols=95 Identities=32% Similarity=0.420 Sum_probs=78.8
Q ss_pred EEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCC
Q 006731 302 MDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPH 381 (633)
Q Consensus 302 LDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~ 381 (633)
||+|||+|..+..+++.+..+|+++|+++.+++.|+++... .++.++++++++++ ++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-----------------~~~~~~~~d~~~l~----~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-----------------EGVSFRQGDAEDLP----FPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-----------------STEEEEESBTTSSS----S-TT
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-----------------cCchheeehHHhCc----cccc
Confidence 89999999999999999656999999999999999988764 44669999999998 8999
Q ss_pred cccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 382 SVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 382 ~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+||+|++...-+++ ..+..++.++.|+|||||.+++
T Consensus 60 sfD~v~~~~~~~~~---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -EEEEEEESHGGGS---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccceeec---cCHHHHHHHHHHHcCcCeEEeC
Confidence 99999986543333 6788999999999999999873
No 20
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.48 E-value=4.6e-13 Score=132.65 Aligned_cols=141 Identities=23% Similarity=0.347 Sum_probs=111.9
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CC------CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA------SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga------~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~ 357 (633)
|.+.....+...++.+||||+||||-+++.+.+. +. ++|+.+|+|+.|+++++++.++.++..
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~---------- 157 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA---------- 157 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc----------
Confidence 4555555667788899999999999999999887 44 699999999999999999998877751
Q ss_pred CCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEEEEecCCC-CC
Q 006731 358 NAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGG-TS 436 (633)
Q Consensus 358 ~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~~~~~~~~-~~ 436 (633)
..++.++.+|+++++ +++..||+.+ |.+++-+-..++.++.+++|+|||||++. +..|.... ..
T Consensus 158 -~~~~~w~~~dAE~Lp----Fdd~s~D~yT---iafGIRN~th~~k~l~EAYRVLKpGGrf~-------cLeFskv~~~~ 222 (296)
T KOG1540|consen 158 -SSRVEWVEGDAEDLP----FDDDSFDAYT---IAFGIRNVTHIQKALREAYRVLKPGGRFS-------CLEFSKVENEP 222 (296)
T ss_pred -CCceEEEeCCcccCC----CCCCcceeEE---EecceecCCCHHHHHHHHHHhcCCCcEEE-------EEEccccccHH
Confidence 134999999999999 9999999998 46667777788999999999999999877 44454433 34
Q ss_pred ccccccccCccccc
Q 006731 437 LPFWENVYGFTMSC 450 (633)
Q Consensus 437 ~~~w~~vyG~d~s~ 450 (633)
+.+..+.|-|+.-+
T Consensus 223 l~~fy~~ysf~Vlp 236 (296)
T KOG1540|consen 223 LKWFYDQYSFDVLP 236 (296)
T ss_pred HHHHHHhhhhhhhc
Confidence 44445566666533
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.48 E-value=2.3e-13 Score=134.21 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=85.5
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
...++.+|||+|||+|.++.++++.|. +|+|+|+|+.|++.|+++++.+++ . +.+..+++...+
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~--------------~-v~~~~~d~~~~~ 90 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL--------------P-LRTDAYDINAAA 90 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC--------------C-ceeEeccchhcc
Confidence 345678999999999999999999987 899999999999999998887776 3 677777876655
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++ ++||+|++..+.+.+ ...++..++..+.++|+|||.++
T Consensus 91 ----~~-~~fD~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 91 ----LN-EDYDFIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ----cc-CCCCEEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 44 679999997653333 34577889999999999999865
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.48 E-value=3.3e-13 Score=132.08 Aligned_cols=100 Identities=30% Similarity=0.389 Sum_probs=86.2
Q ss_pred CCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++.+|||||||+|.+++.++++ +..+|+|+|.++.|++.|+++++.+++ .+++++++++.++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l--------------~~i~~~~~d~~~~~- 108 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL--------------KNVTVVHGRAEEFG- 108 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC--------------CCEEEEeccHhhCC-
Confidence 34899999999999999998875 446999999999999999999999998 44999999999877
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
. .++||+|++..+ ..++.++.++.++|+|||.+++.
T Consensus 109 ---~-~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 109 ---Q-EEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ---C-CCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 4 578999998642 24678999999999999999844
No 23
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.48 E-value=2.8e-13 Score=132.18 Aligned_cols=106 Identities=23% Similarity=0.323 Sum_probs=87.4
Q ss_pred CCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 293 PSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
....++.+|||+|||.|+.++++|+.|. .|+|+|.|+.+++.+++.+...+++ |+....|+.+.
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~---------------i~~~~~Dl~~~ 89 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD---------------IRTRVADLNDF 89 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T---------------EEEEE-BGCCB
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce---------------eEEEEecchhc
Confidence 4456788999999999999999999999 8999999999999999999988873 99999999888
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
. ++ +.||+|+|..+..+|. ....+.++..+...++|||.++.
T Consensus 90 ~----~~-~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 90 D----FP-EEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp S-----T-TTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred c----cc-CCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEEE
Confidence 7 64 7899999976655554 45778999999999999999874
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=4.2e-13 Score=126.83 Aligned_cols=108 Identities=29% Similarity=0.470 Sum_probs=89.2
Q ss_pred CCCCEEEEECCCcchHHHHHH-HcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAA-QAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a-~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
.++.+|||+|||+|.++..++ +.+ ..+|+|||+|+.|++.|+++++.+++ .+++++++|+++++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~--------------~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL--------------DNIEFIQGDIEDLP 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS--------------TTEEEEESBTTCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc--------------cccceEEeehhccc
Confidence 357899999999999999999 443 35899999999999999999999988 68999999999965
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
.. ++ ++||+|++..+ +.+......++..+.++|++||.++....
T Consensus 68 ~~--~~-~~~D~I~~~~~---l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 68 QE--LE-EKFDIIISNGV---LHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp GC--SS-TTEEEEEEEST---GGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--cC-CCeeEEEEcCc---hhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 21 23 79999998643 34445677899999999999999996543
No 25
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.6e-13 Score=140.02 Aligned_cols=113 Identities=27% Similarity=0.421 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
..-.+++.+. ..+|++|||+|||+|+||+.+++.||++|+|+|+.|.+++.|+++++.|+.. ..+
T Consensus 150 ~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-------------~~~ 214 (300)
T COG2264 150 SLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-------------LLV 214 (300)
T ss_pred HHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-------------hhh
Confidence 3345555554 4589999999999999999999999999999999999999999999999985 333
Q ss_pred EEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
+.-..+..... ..++||+||++.+- ..+..+...+.+.|||||+++.+
T Consensus 215 ~~~~~~~~~~~-----~~~~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 215 QAKGFLLLEVP-----ENGPFDVIVANILA------EVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred hcccccchhhc-----ccCcccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEE
Confidence 33333333332 23699999998642 23567888889999999999954
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.46 E-value=8.3e-13 Score=136.68 Aligned_cols=117 Identities=28% Similarity=0.356 Sum_probs=90.1
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
.+.+.....+.+|.+|||||||.|.+++.+|+. |+ +|+||.+|+...+.|++.++..|+. +++++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~-------------~~v~v 116 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLE-------------DRVEV 116 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSS-------------STEEE
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCC-------------CceEE
Confidence 345666778899999999999999999999999 88 9999999999999999999999998 89999
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
..+|..+++ .+||.|||-.|.-.+ +...++.++..+.++|||||+++....+
T Consensus 117 ~~~D~~~~~-------~~fD~IvSi~~~Ehv-g~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 117 RLQDYRDLP-------GKFDRIVSIEMFEHV-GRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp EES-GGG----------S-SEEEEESEGGGT-CGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred EEeeccccC-------CCCCEEEEEechhhc-ChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999998776 389999996542222 3456889999999999999999976533
No 27
>PLN02244 tocopherol O-methyltransferase
Probab=99.45 E-value=7.4e-13 Score=141.70 Aligned_cols=106 Identities=22% Similarity=0.192 Sum_probs=91.4
Q ss_pred CCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++.+|||||||+|.++..+++. |+ +|+|||+|+.+++.|+++++.+++. ++++++.+|+.+++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~-------------~~v~~~~~D~~~~~- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLS-------------DKVSFQVADALNQP- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCC-------------CceEEEEcCcccCC-
Confidence 57789999999999999999987 55 9999999999999999999988886 78999999999988
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++.++||+|++... +.+-.....++.++.++|||||.++...
T Consensus 182 ---~~~~~FD~V~s~~~---~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 182 ---FEDGQFDLVWSMES---GEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ---CCCCCccEEEECCc---hhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 77889999998433 2222456789999999999999998653
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=5.7e-13 Score=141.32 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=91.8
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
+.+.......+|++|||||||+|.++..+++.|+.+|+|||.|+.++..++...+..+.. .+|.++.
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-------------~~i~~~~ 178 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-------------QRAHLLP 178 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-------------CCeEEEe
Confidence 444545556788999999999999999999999888999999999986655544333322 5799999
Q ss_pred ccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 367 gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+++++++ + .++||+|+|..+ +.|...+..++..+.+.|+|||.++.++
T Consensus 179 ~d~e~lp----~-~~~FD~V~s~~v---l~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 179 LGIEQLP----A-LKAFDTVFSMGV---LYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCHHHCC----C-cCCcCEEEECCh---hhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999988 6 588999998543 3344567889999999999999999763
No 29
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.45 E-value=7.4e-13 Score=139.35 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=90.6
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
..++.......+|++|||||||+|.++..++..|+.+|+|||.|+.|+..++...+..+.. .++.++
T Consensus 110 ~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-------------~~v~~~ 176 (314)
T TIGR00452 110 WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-------------KRAILE 176 (314)
T ss_pred HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-------------CCeEEE
Confidence 3455555567889999999999999999999999889999999999987654433322222 578889
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.+++++++ . ..+||+|+|..+ +.|-..+..++.++.+.|||||.++..+
T Consensus 177 ~~~ie~lp----~-~~~FD~V~s~gv---L~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 177 PLGIEQLH----E-LYAFDTVFSMGV---LYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ECCHHHCC----C-CCCcCEEEEcch---hhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999887 3 358999999544 3334567789999999999999999754
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=5.4e-13 Score=136.62 Aligned_cols=115 Identities=29% Similarity=0.356 Sum_probs=98.6
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
.+.+.+.+.+.+|++|||||||-|.+++++|+. |+ +|+||++|+.+.+.|+++++..|+. ++|++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~-------------~~v~v 126 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLE-------------DNVEV 126 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCC-------------cccEE
Confidence 455666778999999999999999999999998 66 9999999999999999999999997 89999
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+..|.+++. ++||-|||--|--.+ +....+.++..+.++|+|||.++..+
T Consensus 127 ~l~d~rd~~-------e~fDrIvSvgmfEhv-g~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 127 RLQDYRDFE-------EPFDRIVSVGMFEHV-GKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred Eeccccccc-------cccceeeehhhHHHh-CcccHHHHHHHHHhhcCCCceEEEEE
Confidence 999999887 459999995442222 23457899999999999999999544
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.44 E-value=9e-13 Score=128.51 Aligned_cols=100 Identities=26% Similarity=0.383 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++.+|||||||+|.+++.+++.+ ..+|+|||.|+.|++.|+++++.+++ +++++++++++++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~--------------~~i~~i~~d~~~~~- 105 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL--------------NNVEIVNGRAEDFQ- 105 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC--------------CCeEEEecchhhcc-
Confidence 358999999999999999988775 35899999999999999999998887 56999999999875
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
. .++||+|++..+ ..++.++..+.++|+|||.++..
T Consensus 106 ---~-~~~fD~I~s~~~-------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 106 ---H-EEQFDVITSRAL-------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ---c-cCCccEEEehhh-------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 2 478999998642 23456778889999999999843
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=8.7e-13 Score=135.53 Aligned_cols=105 Identities=25% Similarity=0.309 Sum_probs=89.0
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...++. .+++++++++.++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~-------------~~v~~~~~d~~~l~~- 107 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVS-------------DNMQFIHCAAQDIAQ- 107 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc-------------cceEEEEcCHHHHhh-
Confidence 4568999999999999999999986 8999999999999999999988876 789999999988742
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.+.++||+|++..+ +.+-..+..++..+.++|||||.++.
T Consensus 108 --~~~~~fD~V~~~~v---l~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 108 --HLETPVDLILFHAV---LEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred --hcCCCCCEEEehhH---HHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 34578999998543 22334567889999999999999974
No 33
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=99.44 E-value=7.3e-14 Score=144.56 Aligned_cols=91 Identities=24% Similarity=0.372 Sum_probs=76.0
Q ss_pred CcCccCCCCCCC--CCCCCCceeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhccccc-cc
Q 006731 29 TEQDWGDWSEDD--GGLESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENR-CW 105 (633)
Q Consensus 29 ~~~~W~dw~~~~--~e~~~~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~~~~~-C~ 105 (633)
.|++|+|.++++ +.+..|+.||||++.+++++.++.||...|||-|+. +++-.|.-| |+-|++.+|+.+. |+
T Consensus 147 ~dd~~Edi~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPd--reYL~D~~G---Ll~YLgeKV~~~~~CL 221 (390)
T KOG2785|consen 147 EDDEEEDIEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPD--REYLTDEKG---LLKYLGEKVGIGFICL 221 (390)
T ss_pred cCcchhhhhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCc--hHhhhchhH---HHHHHHHHhccCceEE
Confidence 335666665543 234556999999999999999999999999998887 466677766 7779999999988 99
Q ss_pred ccC---CccCCHHHHHHHHHHh
Q 006731 106 ICG---LTCQSNQDLQNHLHEA 124 (633)
Q Consensus 106 ~C~---~~~~~~~~~~~Hm~~~ 124 (633)
+|. ..|.+.++|++||.++
T Consensus 222 ~CN~~~~~f~sleavr~HM~~K 243 (390)
T KOG2785|consen 222 FCNELGRPFSSLEAVRAHMRDK 243 (390)
T ss_pred EeccccCcccccHHHHHHHhhc
Confidence 997 8999999999999987
No 34
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.40 E-value=5.6e-12 Score=113.80 Aligned_cols=111 Identities=26% Similarity=0.322 Sum_probs=87.8
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
+.......++.+|||+|||+|.++..+++. +..+|+|+|.|+.+++.|+++++.+++ .+++++.+
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------------~~~~~~~~ 76 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV--------------SNIVIVEG 76 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC--------------CceEEEec
Confidence 333444566789999999999999999987 346999999999999999999988877 57899999
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++..... ...++||+|++... ......++..+.++|+|||.++...
T Consensus 77 ~~~~~~~---~~~~~~D~v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 77 DAPEALE---DSLPEPDRVFIGGS------GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cccccCh---hhcCCCCEEEECCc------chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 8775321 12368999997431 1245689999999999999999654
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.40 E-value=2.5e-12 Score=131.72 Aligned_cols=107 Identities=27% Similarity=0.352 Sum_probs=86.1
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
.+.......++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++. ..+.++.+
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~-------------------~~~~~~~~ 92 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD-------------------AADHYLAG 92 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC-------------------CCCCEEEc
Confidence 344443444678999999999999999988875 9999999999998887753 22467899
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
|++.++ ++.++||+|+|... +.+...+..++..+.++|+|||.++.+
T Consensus 93 d~~~~~----~~~~~fD~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 93 DIESLP----LATATFDLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CcccCc----CCCCcEEEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 999887 77789999998643 344456788999999999999999954
No 36
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.40 E-value=1.8e-12 Score=125.10 Aligned_cols=104 Identities=31% Similarity=0.417 Sum_probs=85.6
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~-~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
++++|||+|||+|.+++.+++.+.. +|+++|+++.+++.|++++..|++. + ++++.+|..+-.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~-------------~-v~~~~~d~~~~~-- 94 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE-------------N-VEVVQSDLFEAL-- 94 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT-------------T-EEEEESSTTTTC--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc-------------c-cccccccccccc--
Confidence 6789999999999999999999764 7999999999999999999999985 5 999999987643
Q ss_pred cccCCCcccEEEEeccccccc--ChhhHHHHHHHHhhcccCCcEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~--~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+.++||+|+|++.-+... ....+..++....++|+|||.++
T Consensus 95 ---~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 95 ---PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp ---CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ---cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 468999999996422111 11246788999999999999987
No 37
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.38 E-value=5e-12 Score=132.28 Aligned_cols=101 Identities=26% Similarity=0.442 Sum_probs=85.1
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++++|||+|||+|++++.+++.|+.+|+|+|+++.+++.|++++..|++. .++.++.++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-------------~~~~~~~~~~~~---- 220 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-------------DRLQVKLIYLEQ---- 220 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-------------cceEEEeccccc----
Confidence 467999999999999999999999889999999999999999999999986 778888776332
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
...++||+|+++.+. ..+..++..+.++|||||.++.+
T Consensus 221 --~~~~~fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 221 --PIEGKADVIVANILA------EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred --ccCCCceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 234789999997542 23567888899999999999854
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.38 E-value=3.3e-12 Score=132.37 Aligned_cols=108 Identities=30% Similarity=0.432 Sum_probs=90.7
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
.+.++.+|||||||+|.+++.+++. |. .+|+|+|+++.+++.|+++....++ .+++++.+++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--------------~~v~~~~~d~~~ 139 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--------------TNVEFRLGEIEA 139 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--------------CCEEEEEcchhh
Confidence 3568899999999999988877775 54 4799999999999999999988877 679999999998
Q ss_pred cccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++ ++.+.||+|+++.+.+ +......++..+.++|||||.++...
T Consensus 140 l~----~~~~~fD~Vi~~~v~~---~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 140 LP----VADNSVDVIISNCVIN---LSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CC----CCCCceeEEEEcCccc---CCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 87 7778999999876533 22346778999999999999998654
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.37 E-value=3.3e-12 Score=133.55 Aligned_cols=102 Identities=23% Similarity=0.350 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++.+|||||||+|.+++++++.|. +|+|+|.|+.+++.|+++++.+++ ++++..+|+....
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l---------------~v~~~~~D~~~~~-- 180 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL---------------NIRTGLYDINSAS-- 180 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC---------------ceEEEEechhccc--
Confidence 3556999999999999999999986 999999999999999999988775 3788888887765
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+ .++||+|++..+.+++ .......++..+.++|+|||.++
T Consensus 181 --~-~~~fD~I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 181 --I-QEEYDFILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred --c-cCCccEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEEE
Confidence 4 5789999997654444 34567889999999999999966
No 40
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=3.1e-12 Score=114.82 Aligned_cols=108 Identities=30% Similarity=0.440 Sum_probs=87.8
Q ss_pred CCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
|.+|||+|||+|.+++.+++.++.+|+|+|+++.+++.|+.++..+++. ++++++++|+.++...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-------------~~~~~~~~D~~~~~~~-- 65 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-------------DRVEVIVGDARDLPEP-- 65 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-------------TTEEEEESHHHHHHHT--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-------------ceEEEEECchhhchhh--
Confidence 5689999999999999999999669999999999999999999999887 8899999999887522
Q ss_pred cCCCcccEEEEeccccccc------ChhhHHHHHHHHhhcccCCcEEEee
Q 006731 378 IQPHSVDVLVSEWMGYCLL------YESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~------~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++.++||+|++++. |+-. .......++.++.++|+|||.++.-
T Consensus 66 ~~~~~~D~Iv~npP-~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 66 LPDGKFDLIVTNPP-YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp CTTT-EEEEEE--S-TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCceeEEEEECCC-CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 55689999999853 2211 1123567899999999999998843
No 41
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.36 E-value=1.1e-11 Score=124.33 Aligned_cols=140 Identities=31% Similarity=0.397 Sum_probs=114.2
Q ss_pred hhhhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 006731 259 NESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 259 d~~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~ 338 (633)
...|++.++.++.+..| +..|.....+.+..+....++.+|||+|||+|.++..+++.++ +|+++|.++.+++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~ 85 (224)
T TIGR01983 9 AHEWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKL 85 (224)
T ss_pred HHHhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHH
Confidence 45789999999988887 8888888888887654345689999999999999999998877 69999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccC-CCcccEEEEecccccccChhhHHHHHHHHhhcccCCcE
Q 006731 339 IAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (633)
Q Consensus 339 ~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~-~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~ 417 (633)
++..++. .+++++.+++.++. .. .++||+|++..+ +.+...+..++..+.++|+|||.
T Consensus 86 ~~~~~~~--------------~~~~~~~~d~~~~~----~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 86 HAKKDPL--------------LKIEYRCTSVEDLA----EKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGI 144 (224)
T ss_pred HHHHcCC--------------CceEEEeCCHHHhh----cCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcE
Confidence 8887664 36889999988776 22 378999998532 33345677899999999999999
Q ss_pred EEeec
Q 006731 418 ILPDT 422 (633)
Q Consensus 418 lip~~ 422 (633)
++...
T Consensus 145 l~i~~ 149 (224)
T TIGR01983 145 LFFST 149 (224)
T ss_pred EEEEe
Confidence 88643
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=1.6e-11 Score=124.20 Aligned_cols=143 Identities=29% Similarity=0.398 Sum_probs=107.0
Q ss_pred ChHHHhhhh---hhhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEe
Q 006731 251 SAKDIKKVN---ESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVE 327 (633)
Q Consensus 251 ~~~~~~~~d---~~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD 327 (633)
.+++++.++ +.||+.|+..+.+..| ...|. +.+.......++.+|||||||+|.++..+++.++ +|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD 77 (233)
T PRK05134 5 DPAEIAKFSALAARWWDPNGEFKPLHRI--NPLRL----NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGID 77 (233)
T ss_pred cHHHHHHHHHHHHHHhccCCCcHHHHHh--hHHHH----HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEc
Confidence 344444433 4799999988877766 22333 3444444456789999999999999999999876 799999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHH
Q 006731 328 ASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFA 407 (633)
Q Consensus 328 ~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a 407 (633)
.++.+++.|++++...+. .++++.+++.++.. ...++||+|++..+ +.+...+..++..
T Consensus 78 ~s~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~~~---~~~~~fD~Ii~~~~---l~~~~~~~~~l~~ 136 (233)
T PRK05134 78 ASEENIEVARLHALESGL---------------KIDYRQTTAEELAA---EHPGQFDVVTCMEM---LEHVPDPASFVRA 136 (233)
T ss_pred CCHHHHHHHHHHHHHcCC---------------ceEEEecCHHHhhh---hcCCCccEEEEhhH---hhccCCHHHHHHH
Confidence 999999999988876553 47888888877641 23478999998533 3334456788999
Q ss_pred HhhcccCCcEEEee
Q 006731 408 RDQWLKPGGAILPD 421 (633)
Q Consensus 408 ~~r~LkpgG~lip~ 421 (633)
+.++|+|||.++..
T Consensus 137 ~~~~L~~gG~l~v~ 150 (233)
T PRK05134 137 CAKLVKPGGLVFFS 150 (233)
T ss_pred HHHHcCCCcEEEEE
Confidence 99999999999854
No 43
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.35 E-value=5.6e-12 Score=130.18 Aligned_cols=113 Identities=24% Similarity=0.282 Sum_probs=89.2
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
+.....+.++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++... . .++.++.+|
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~-------------~~i~~~~~D 107 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---K-------------NKIEFEAND 107 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---C-------------CceEEEECC
Confidence 334456778899999999999999988875223999999999999999987643 2 679999999
Q ss_pred ccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+.+.+ +++++||+|++....+++ .......++..+.++|||||.++...
T Consensus 108 ~~~~~----~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 108 ILKKD----FPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred cccCC----CCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 98877 777899999984321111 22367889999999999999999643
No 44
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=6.9e-12 Score=128.34 Aligned_cols=107 Identities=22% Similarity=0.337 Sum_probs=88.0
Q ss_pred CCCCEEEEECCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a---Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++.+|||||||+|.++..+++. ...+|+|||.|+.|++.|++++..++.. .+++++++++.++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-------------~~v~~~~~d~~~~ 121 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-------------TPVDVIEGDIRDI 121 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCeEEEeCChhhC
Confidence 46789999999999999888872 2349999999999999999999888775 7899999999887
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+ + ..+|+|++....+++. ......++..+.+.|||||.++...
T Consensus 122 ~----~--~~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 122 A----I--ENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred C----C--CCCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6 4 3599999865444443 3446789999999999999998654
No 45
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.34 E-value=3.7e-12 Score=111.86 Aligned_cols=97 Identities=29% Similarity=0.426 Sum_probs=78.2
Q ss_pred EEEECCCcchHHHHHHHcC---C-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 301 VMDIGCGTGILSLFAAQAG---A-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 301 VLDVGcGtG~lsl~~a~aG---a-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
|||+|||+|..+..+++.. . .+++|||+|+.|++.|++.....+. +++++++|+.+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---------------~~~~~~~D~~~l~--- 62 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---------------KVRFVQADARDLP--- 62 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---------------TSEEEESCTTCHH---
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---------------ceEEEECCHhHCc---
Confidence 7999999999999999873 2 6999999999999999999887553 5899999999987
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCc
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG 416 (633)
...++||+|++.......+....+..++..+.++|+|||
T Consensus 63 -~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 63 -FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 566899999994221223667788999999999999998
No 46
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.34 E-value=3.9e-12 Score=123.03 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
..-.++||+|||.|.|+..+|... .+++++|+|+.+++.|+++++. . .+|+++++++.+..
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~--~--------------~~V~~~~~dvp~~~-- 102 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG--L--------------PHVEWIQADVPEFW-- 102 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-----------------SSEEEEES-TTT----
T ss_pred cccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC--C--------------CCeEEEECcCCCCC--
Confidence 444789999999999999999884 5999999999999999998863 3 67999999998764
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
|.++||+||..-++|+|....++..++..+...|+|||.+|..+
T Consensus 103 ---P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 103 ---PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp ----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 67999999987789999877789999999999999999999654
No 47
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.33 E-value=8.8e-12 Score=132.32 Aligned_cols=115 Identities=25% Similarity=0.252 Sum_probs=87.6
Q ss_pred hHHHHHHHHhCCCC-CCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 006731 282 TDSYRQAILENPSL-MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (633)
Q Consensus 282 ~~~y~~aI~~~~~~-~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~ 359 (633)
++..++.+.....+ .++.+|||||||+|.+++.+++. +..+|+++|.|+.|++.|+++...
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----------------- 159 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----------------- 159 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----------------
Confidence 33344434433332 35789999999999999888875 446899999999999998886532
Q ss_pred CcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 360 ~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.+++++.+|+++++ ++.++||+|++..+ +.+-.....++.++.++|||||.++.
T Consensus 160 ~~i~~i~gD~e~lp----~~~~sFDvVIs~~~---L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 160 KECKIIEGDAEDLP----FPTDYADRYVSAGS---IEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred cCCeEEeccHHhCC----CCCCceeEEEEcCh---hhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 46789999999887 77789999998543 22233456789999999999999874
No 48
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.32 E-value=9e-12 Score=128.01 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=82.6
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
+.......++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|++ .+++++++
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~---------------------~~~~~~~~ 79 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE---------------------RGVDARTG 79 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh---------------------cCCcEEEc
Confidence 4444556778999999999999999999873 2489999999999988864 23678899
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
|++++. +.++||+|++..+-+ +-..+..++..+.+.|||||.++..
T Consensus 80 d~~~~~-----~~~~fD~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 80 DVRDWK-----PKPDTDVVVSNAALQ---WVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ChhhCC-----CCCCceEEEEehhhh---hCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 998765 347899999965433 3345688999999999999999854
No 49
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=8.3e-12 Score=125.81 Aligned_cols=111 Identities=24% Similarity=0.372 Sum_probs=92.9
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.....++|||+|||+|++++++|+. ...+|+|||+.+.+++.|+++++.|++. ++|+++++|+.++
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-------------~ri~v~~~Di~~~ 107 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-------------ERIQVIEADIKEF 107 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-------------hceeEehhhHHHh
Confidence 3445789999999999999999998 5469999999999999999999999998 9999999999998
Q ss_pred ccccccCCCcccEEEEecccccccChh----------------hHHHHHHHHhhcccCCcEEEe
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYES----------------MLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~----------------~l~~vl~a~~r~LkpgG~lip 420 (633)
... ....+||+|||++. |+-.+.. .+..++....++|||||.+..
T Consensus 108 ~~~--~~~~~fD~Ii~NPP-yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 108 LKA--LVFASFDLIICNPP-YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred hhc--ccccccCEEEeCCC-CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 744 23357999999974 3332222 267889999999999999873
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.31 E-value=2.1e-11 Score=120.50 Aligned_cols=111 Identities=26% Similarity=0.376 Sum_probs=89.4
Q ss_pred HhCCCCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 290 LENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 290 ~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
.....+.++.+|||+|||+|.+++.+++. + ..+|+++|.++.+++.|+++++.+++. ++++++.+
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-------------~~v~~~~~ 99 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-------------NNIVLIKG 99 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-------------CCeEEEEe
Confidence 34456788999999999999999999875 3 358999999999999999999998865 78999999
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+..+... ...++||.|++.. +...+..++..+.+.|+|||.++...
T Consensus 100 d~~~~l~---~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 100 EAPEILF---TINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred chhhhHh---hcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 9977431 1236899999742 12346778999999999999998543
No 51
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.30 E-value=1.3e-11 Score=126.58 Aligned_cols=115 Identities=26% Similarity=0.273 Sum_probs=90.0
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
+.+...+...+|++|||||||.|..+..++++||+.|+|+|.++......+...+-.|.. ..+.++.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-------------~~~~~lp 171 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-------------PPVFELP 171 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-------------ccEEEcC
Confidence 345555567899999999999999999999999999999999998766655444433432 4566666
Q ss_pred ccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 367 gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
..+++++ . .+.||+|+| ||. |.|-..+-..|..+...|+|||.+|..+
T Consensus 172 lgvE~Lp----~-~~~FDtVF~--MGV-LYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 172 LGVEDLP----N-LGAFDTVFS--MGV-LYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred cchhhcc----c-cCCcCEEEE--eee-hhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 7888887 4 578999999 443 4455667788999999999999999665
No 52
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=3.4e-11 Score=119.80 Aligned_cols=110 Identities=23% Similarity=0.298 Sum_probs=85.6
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
....+.+.....++.+|||||||+|.++..+++. + ..+|+|+|.++.+++.|++++..+++. +++
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-------------~~v 126 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-------------GVV 126 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-------------CcE
Confidence 3344555555678899999999999999888876 3 358999999999999999999988885 679
Q ss_pred EEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+++.+|..+.. ....+||+|++.... ..+...+.+.|+|||+++.
T Consensus 127 ~~~~~d~~~~~----~~~~~fD~Ii~~~~~---------~~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 127 EVYHGDGKRGL----EKHAPFDAIIVTAAA---------STIPSALVRQLKDGGVLVI 171 (205)
T ss_pred EEEECCcccCC----ccCCCccEEEEccCc---------chhhHHHHHhcCcCcEEEE
Confidence 99999998654 234689999985321 1222456788999999874
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.28 E-value=3.2e-11 Score=121.68 Aligned_cols=116 Identities=29% Similarity=0.423 Sum_probs=93.6
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa--~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
++..+.......++.+|||||||+|.++..+++.+. .+|+++|.++.+++.|++++..+++. .++
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-------------~~~ 105 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-------------GNV 105 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-------------cCe
Confidence 333444444455778999999999999999999863 69999999999999999988776665 779
Q ss_pred EEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+++.+++.++. ++.+.||+|++. +.+.+-..+..++..+.++|+|||.++.
T Consensus 106 ~~~~~d~~~~~----~~~~~~D~I~~~---~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 106 EFVQGDAEALP----FPDNSFDAVTIA---FGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EEEecccccCC----CCCCCccEEEEe---cccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 99999998876 556789999864 3344445678899999999999999874
No 54
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.28 E-value=2.8e-11 Score=117.58 Aligned_cols=105 Identities=20% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..++++|||+|||+|.++..+++.|. +|+|+|.|+.+++.|+++++.++. +++++.+|+.+..
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~~~~~d~~~~~- 79 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---------------GLDVVMTDLFKGV- 79 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---------------ceEEEEccccccc-
Confidence 45678999999999999999999987 999999999999999999987764 4888999987643
Q ss_pred ccccCCCcccEEEEeccccccc------------------ChhhHHHHHHHHhhcccCCcEEEee
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLL------------------YESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~------------------~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
.++||+|++++.-+... ....+..++.++.++|+|||.++..
T Consensus 80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 35899999985321111 0112567899999999999998853
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.28 E-value=2.6e-11 Score=124.30 Aligned_cols=96 Identities=31% Similarity=0.498 Sum_probs=78.4
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..++++|||+|||+|++++.+++.|+.+|+|+|+|+.+++.|+++++.|++. .++.+..++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-------------~~~~~~~~~------ 177 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-------------LNVYLPQGD------ 177 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-------------ceEEEccCC------
Confidence 3578999999999999999999999878999999999999999999988874 455443321
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
.+||+|+++... ..+..++..+.++|||||.++.+
T Consensus 178 ------~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 178 ------LKADVIVANILA------NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred ------CCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 269999986532 23567788899999999999954
No 56
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.28 E-value=5.5e-11 Score=116.40 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=84.7
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
+...+...++.+|||||||+|.+++.+++.+ ..+|+++|.++.+++.|++++..+++ .+++++.+
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~--------------~~i~~~~~ 88 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC--------------GNIDIIPG 88 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--------------CCeEEEec
Confidence 3333455688999999999999999999874 35999999999999999999988877 56999999
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++.. . ++ ++||+|++.... ..+..++..+.++|+|||.++.
T Consensus 89 d~~~-~----~~-~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 89 EAPI-E----LP-GKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred Cchh-h----cC-cCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEE
Confidence 8752 2 33 689999975321 2356688888999999999985
No 57
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.28 E-value=2.9e-11 Score=124.23 Aligned_cols=107 Identities=20% Similarity=0.296 Sum_probs=84.8
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
.+.......++.+|||||||+|.++..+++. +..+|+|||+|+.|++.|+++. .++.++.
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------------------~~~~~~~ 82 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------------------PDCQFVE 82 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------------------CCCeEEE
Confidence 3444445667899999999999999999887 3459999999999999888753 4578899
Q ss_pred ccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 367 gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
+|+.++. +..+||+|++..+-+ +-.....++..+.+.|||||.++..
T Consensus 83 ~d~~~~~-----~~~~fD~v~~~~~l~---~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 83 ADIASWQ-----PPQALDLIFANASLQ---WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CchhccC-----CCCCccEEEEccChh---hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9998765 346899999865422 3345678999999999999999864
No 58
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.27 E-value=3.6e-11 Score=120.45 Aligned_cols=107 Identities=20% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa--~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
..+.....+.++.+|||||||+|.++..+++... .+|+|||.++.+++.|+++++.+++ +++++
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--------------~~v~~ 132 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--------------DNVIV 132 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--------------CCeEE
Confidence 3444445677899999999999999999998742 3699999999999999999999887 67999
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+++|..+.. ....+||+|++... ...+...+.+.|+|||+++.
T Consensus 133 ~~~d~~~~~----~~~~~fD~Ii~~~~---------~~~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 133 IVGDGTQGW----EPLAPYDRIYVTAA---------GPKIPEALIDQLKEGGILVM 175 (215)
T ss_pred EECCcccCC----cccCCCCEEEEcCC---------cccccHHHHHhcCcCcEEEE
Confidence 999997654 23468999997431 12233456788999999884
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.27 E-value=4.8e-11 Score=128.44 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=88.3
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
++.++....+.+|||+|||+|.+++.+++.+ ..+|++||.|+.+++.|+++++.|+.. ...+++++.+
T Consensus 220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-----------~~~~v~~~~~ 288 (378)
T PRK15001 220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-----------ALDRCEFMIN 288 (378)
T ss_pred HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-----------cCceEEEEEc
Confidence 4444433445799999999999999999884 359999999999999999999988752 0137899998
Q ss_pred cccccccccccCCCcccEEEEecccccc--cChhhHHHHHHHHhhcccCCcEEEee
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L--~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
|+... ++..+||+|+|++..+.. ........++....++|+|||.++..
T Consensus 289 D~l~~-----~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 289 NALSG-----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred ccccc-----CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 87543 234689999998643322 12334567888999999999998843
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=3.3e-11 Score=134.76 Aligned_cols=107 Identities=25% Similarity=0.339 Sum_probs=88.1
Q ss_pred CCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
..+.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|+++.. +.. .+++++++|+..
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~--~~~-------------~~v~~~~~d~~~ 325 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAI--GRK-------------CSVEFEVADCTK 325 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhh--cCC-------------CceEEEEcCccc
Confidence 34567889999999999999988886 55 89999999999999988764 333 679999999988
Q ss_pred cccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.+ ++.++||+|+|..+ +.+-.....++..+.++|||||.++...
T Consensus 326 ~~----~~~~~fD~I~s~~~---l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 326 KT----YPDNSFDVIYSRDT---ILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CC----CCCCCEEEEEECCc---ccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 77 77788999999543 3333567889999999999999999654
No 61
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.26 E-value=9e-11 Score=117.76 Aligned_cols=104 Identities=30% Similarity=0.296 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..++.+|||||||+|.++..+++.++ +|+|+|+|+.|+..|++++..++.. .+++++++++..++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~-------------~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVA-------------GNVEFEVNDLLSLC- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCC-------------CceEEEECChhhCC-
Confidence 46789999999999999999998876 9999999999999999999877764 68999999987653
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++||+|++..+-+++ ....+..++..+.+++++++.+..
T Consensus 118 ------~~fD~ii~~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 ------GEFDIVVCMDVLIHY-PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ------CCcCEEEEhhHHHhC-CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 689999984322211 234567788888888887766653
No 62
>PRK08317 hypothetical protein; Provisional
Probab=99.26 E-value=6.1e-11 Score=119.29 Aligned_cols=119 Identities=27% Similarity=0.356 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG--a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~ 360 (633)
..|++.+.......++.+|||+|||+|.++..+++.. ..+|+|+|.++.+++.|+++... .. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~-------------~ 69 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LG-------------P 69 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CC-------------C
Confidence 3466666677777889999999999999999998863 35899999999999999887322 22 6
Q ss_pred cEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 361 ~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
+++++.++++.++ ++.++||+|++..+ +.+...+..++..+.++|+|||.++....
T Consensus 70 ~~~~~~~d~~~~~----~~~~~~D~v~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 70 NVEFVRGDADGLP----FPDGSFDAVRSDRV---LQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ceEEEecccccCC----CCCCCceEEEEech---hhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 7999999998877 66789999998643 33334578899999999999999986543
No 63
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=4.2e-11 Score=119.77 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=84.9
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
...+.....+.++.+|||||||+|.++..+++. +. .+|+++|.++.+++.|+++++..++ .+++
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--------------~~v~ 130 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--------------DNVE 130 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCeE
Confidence 344455556778999999999999999998887 33 5999999999999999999998887 6799
Q ss_pred EEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++++|..... .+..+||+|++... . ..+..++.+.|||||+++.
T Consensus 131 ~~~gd~~~~~----~~~~~fD~I~~~~~---~------~~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 131 VIVGDGTLGY----EENAPYDRIYVTAA---G------PDIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred EEECCcccCC----CcCCCcCEEEECCC---c------ccchHHHHHhhCCCcEEEE
Confidence 9999987654 34578999997421 1 1223455678999999874
No 64
>PRK14967 putative methyltransferase; Provisional
Probab=99.26 E-value=6.4e-11 Score=119.29 Aligned_cols=106 Identities=30% Similarity=0.354 Sum_probs=85.4
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
...++.+|||+|||+|.++..+++.|+.+|+++|+++.+++.|++++..+++ +++++.+|+.+.
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---------------~~~~~~~d~~~~- 96 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---------------DVDVRRGDWARA- 96 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---------------eeEEEECchhhh-
Confidence 3567789999999999999999998877999999999999999999987765 378899998764
Q ss_pred cccccCCCcccEEEEecccccccC-------------------hhhHHHHHHHHhhcccCCcEEEe
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLY-------------------ESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~-------------------e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++.++||+|++++ .|.... ...+..++..+.++|||||+++.
T Consensus 97 ----~~~~~fD~Vi~np-Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 97 ----VEFRPFDVVVSNP-PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred ----ccCCCeeEEEECC-CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3457899999975 232211 11256688889999999999984
No 65
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.26 E-value=4.7e-11 Score=121.48 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=86.6
Q ss_pred CCCCEEEEECCCcchHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAG---ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aG---a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++++..+.. .+++++++|+.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-------------~~v~~~~~d~~~~ 118 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-------------IPVEILCNDIRHV 118 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-------------CCeEEEECChhhC
Confidence 467899999999999999998852 348999999999999999998876654 6799999999987
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+ ++ .+|+|++...-+++ .......++..+.+.|+|||.++...
T Consensus 119 ~----~~--~~d~v~~~~~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 119 E----IK--NASMVILNFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred C----CC--CCCEEeeecchhhC-CHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 7 43 58999875432322 23456789999999999999999654
No 66
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.26 E-value=2.9e-11 Score=121.53 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=86.2
Q ss_pred CEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
++|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...|+. ++++++.+|+...+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-------------~~i~~~~~d~~~~~---- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-------------GRIRIFYRDSAKDP---- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-------------cceEEEecccccCC----
Confidence 479999999999999998873 358999999999999999999988887 89999999997665
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++ ++||+|++..+.+ +......++..+.++|+|||.++...
T Consensus 64 ~~-~~fD~I~~~~~l~---~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 FP-DTYDLVFGFEVIH---HIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CC-CCCCEeehHHHHH---hCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 44 6899999854422 22456889999999999999999653
No 67
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.26 E-value=6e-11 Score=118.38 Aligned_cols=114 Identities=26% Similarity=0.389 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa--~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~ 361 (633)
.+...+.......++.+|||+|||+|.++..+++.+. .+++++|+++.+++.++++.. .. .+
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~-------------~~ 89 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP-------------LN 89 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC-------------CC
Confidence 3444455444455789999999999999999998865 489999999999988888764 22 67
Q ss_pred EEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 362 I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+.++.+++.+++ ++.++||+|++.. .+.+...+..++..+.++|+|||.++.
T Consensus 90 i~~~~~d~~~~~----~~~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 90 IEFIQADAEALP----FEDNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred ceEEecchhcCC----CCCCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 999999999877 5667899999743 244455678899999999999999884
No 68
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.25 E-value=9.2e-11 Score=112.67 Aligned_cols=114 Identities=31% Similarity=0.366 Sum_probs=94.3
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
+...+..+.+.++.+++|||||||.++..++..+. .+|||||.++.+++..+++.++.|+ +++++
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--------------~n~~v 88 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--------------DNLEV 88 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--------------CcEEE
Confidence 33445566789999999999999999999997764 6999999999999999999999996 89999
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
+.|++.+.. ....++|.|+. |-. ..++.++..+...|||||+++....+
T Consensus 89 v~g~Ap~~L----~~~~~~daiFI---GGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 89 VEGDAPEAL----PDLPSPDAIFI---GGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EeccchHhh----cCCCCCCEEEE---CCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 999998864 12237999994 222 45788999999999999999965544
No 69
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.24 E-value=4.3e-11 Score=118.81 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=85.0
Q ss_pred CCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc-ccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-EELGE 374 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~-e~l~~ 374 (633)
++.+|||||||+|.++..+++.. ..+|+|||+|+.+++.|++++..+++ .+++++++++ +.++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--------------~~v~~~~~d~~~~l~~ 105 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--------------TNLRLLCGDAVEVLLD 105 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--------------CCEEEEecCHHHHHHH
Confidence 56899999999999999998863 35899999999999999999988877 6799999999 65541
Q ss_pred ccccCCCcccEEEEeccccccc--Ch---hhHHHHHHHHhhcccCCcEEEeec
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLL--YE---SMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~--~e---~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. ++.++||+|++........ +. .....++..+.++|||||.++..+
T Consensus 106 ~--~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 106 M--FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred H--cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 1 3457899999853211110 00 124678999999999999998543
No 70
>PRK05785 hypothetical protein; Provisional
Probab=99.22 E-value=7.3e-11 Score=119.17 Aligned_cols=91 Identities=22% Similarity=0.251 Sum_probs=75.0
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
++.+|||||||||.++..+++.+..+|+|+|+|+.|++.|++. ..+++++++.++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------------------~~~~~~d~~~lp--- 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------------------DDKVVGSFEALP--- 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------------------cceEEechhhCC---
Confidence 4789999999999999999988324999999999999888752 124688999888
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCc
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG 416 (633)
+++++||+|++.. .+.+-..+..++.++.|.|||.+
T Consensus 106 -~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 -FRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 8889999999853 34455678899999999999954
No 71
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=99.21 E-value=4.9e-12 Score=110.25 Aligned_cols=95 Identities=33% Similarity=0.617 Sum_probs=21.9
Q ss_pred eeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhccc-ccccccCCccCCHHHHHHHHHHhc-
Q 006731 48 LCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAE-NRCWICGLTCQSNQDLQNHLHEAY- 125 (633)
Q Consensus 48 ~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~~~-~~C~~C~~~~~~~~~~~~Hm~~~~- 125 (633)
.|+||+..|+++..+++||+..|+|++... ..+....++++|++.++.. ..|.+|++.|.+.++|+.||....
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H 75 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQ-----KYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHH 75 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTT
T ss_pred Cccccccccccccccccccccccccccccc-----cccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccC
Confidence 599999999999999999999999998842 2334678899999999987 669999999999999999999753
Q ss_pred c--cccccCCCCCcCcccccccCc
Q 006731 126 N--LKETKLRWDKEKYLKPFMQDD 147 (633)
Q Consensus 126 ~--~~~~~~~w~~d~yl~Pv~e~D 147 (633)
. .......|+.-+++.|+.++|
T Consensus 76 ~~~~~~~~~~~~~~~~~y~~~~~~ 99 (100)
T PF12756_consen 76 KKRNSESEESWEEFEKFYDFWSND 99 (100)
T ss_dssp TC-S--------------------
T ss_pred CCcccccccccccccccccccccC
Confidence 2 223246799999999998876
No 72
>PRK06922 hypothetical protein; Provisional
Probab=99.20 E-value=1.2e-10 Score=130.91 Aligned_cols=110 Identities=23% Similarity=0.383 Sum_probs=85.3
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
..++.+|||||||+|.++..+++. ...+|+|+|+|+.|++.|+++....+ .++.++++|+.+++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---------------~~ie~I~gDa~dLp 480 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---------------RSWNVIKGDAINLS 480 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---------------CCeEEEEcchHhCc
Confidence 457899999999999998888875 33599999999999999998765443 45888999988764
Q ss_pred cccccCCCcccEEEEeccccccc----------ChhhHHHHHHHHhhcccCCcEEEee
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLL----------YESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~----------~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
.. +++++||+|++.++-+.+. ....+..++.++.+.|||||.++..
T Consensus 481 ~~--fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 481 SS--FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred cc--cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 21 4567899999865322211 1245678999999999999999864
No 73
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.20 E-value=2.2e-10 Score=119.59 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=84.7
Q ss_pred CCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|+++++.+++. ++|+++++|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-------------~~i~~~~~D~~~~--- 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-------------DRVTLIQSDLFAA--- 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CcEEEEECchhhc---
Confidence 45799999999999999999873 349999999999999999999999986 7899999998643
Q ss_pred cccCCCcccEEEEecccccc-----------cCh------------hhHHHHHHHHhhcccCCcEEEee
Q 006731 376 MQIQPHSVDVLVSEWMGYCL-----------LYE------------SMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L-----------~~e------------~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++.++||+||+++. |.- .+| .....++..+.++|+|||.++..
T Consensus 185 --~~~~~fD~Iv~NPP-y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 185 --LPGRKYDLIVSNPP-YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred --cCCCCccEEEECCC-CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34468999999742 110 111 12456788889999999999854
No 74
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.20 E-value=8.4e-11 Score=127.84 Aligned_cols=119 Identities=23% Similarity=0.221 Sum_probs=92.2
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++++|||+|||||.+++.++..|+.+|++||.|+.+++.|+++++.|++.. .+++++++|+.++...
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~------------~~v~~i~~D~~~~l~~ 286 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL------------SKAEFVRDDVFKLLRT 286 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC------------CcEEEEEccHHHHHHH
Confidence 4689999999999999999888888899999999999999999999999840 3799999999876321
Q ss_pred cccCCCcccEEEEecccccccChh-------hHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYES-------MLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~-------~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
.....++||+||+++. ++..... .+..++....++|+|||.++.++|+-++
T Consensus 287 ~~~~~~~fDlVilDPP-~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 287 YRDRGEKFDVIVMDPP-KFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred HHhcCCCCCEEEECCC-CCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 1112468999999875 3332221 2445566778999999999977766443
No 75
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.20 E-value=1.2e-10 Score=117.40 Aligned_cols=101 Identities=32% Similarity=0.409 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++.+|||||||+|.++..+++.+. .+|+++|+++.++..+++... .++.++.+|+++.+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~~- 93 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------------------ENVQFICGDAEKLP- 93 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------------------CCCeEEecchhhCC-
Confidence 4568999999999999999999864 579999999999988876543 46889999999887
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++.++||+|++..+ +.+...+..++..+.++|+|||.++..
T Consensus 94 ---~~~~~fD~vi~~~~---l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 94 ---LEDSSFDLIVSNLA---LQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---CCCCceeEEEEhhh---hhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 67789999998654 334456788999999999999999854
No 76
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.20 E-value=2.1e-10 Score=113.09 Aligned_cols=111 Identities=26% Similarity=0.351 Sum_probs=85.4
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
.+.......++.+|||+|||+|.++..+++.+ ..+|+|||.++.+++.|+++++.+++ .+++++.
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~--------------~~v~~~~ 96 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV--------------KNVEVIE 96 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CCeEEEE
Confidence 34555556788999999999999999998763 35999999999999999999998887 5699999
Q ss_pred ccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 367 gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+|+.+... .....+|.++... ...+..++..+.++|+|||.++...
T Consensus 97 ~d~~~~~~---~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 97 GSAPECLA---QLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CchHHHHh---hCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 99865311 1123467766421 1245778899999999999998553
No 77
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.19 E-value=5.6e-12 Score=110.08 Aligned_cols=98 Identities=28% Similarity=0.293 Sum_probs=62.7
Q ss_pred EEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCC
Q 006731 302 MDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP 380 (633)
Q Consensus 302 LDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~ 380 (633)
||||||+|.++..+++. ...+|+|+|+|+.|++.|++++...+. .+...+.....+.... .+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--------------DNFERLRFDVLDLFDY--DPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----------------EEEEE--SSS---C--CC-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--------------cceeEEEeecCChhhc--ccc
Confidence 79999999999998888 334999999999999889988887765 4455555555444311 122
Q ss_pred CcccEEEEecccccccChhhHHHHHHHHhhcccCCcEE
Q 006731 381 HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAI 418 (633)
Q Consensus 381 ~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~l 418 (633)
++||+|++..+-+ +-..+..++..+.++|||||.+
T Consensus 65 ~~fD~V~~~~vl~---~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLH---HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHh---hhhhHHHHHHHHHHHcCCCCCC
Confidence 5999999864433 3367889999999999999986
No 78
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.19 E-value=1.8e-10 Score=122.88 Aligned_cols=113 Identities=27% Similarity=0.283 Sum_probs=92.2
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
++.......++.+|||+|||||.+++.++..|+ +|+|+|+++.|++.|+++++.+++. + +.++++
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~-------------~-i~~~~~ 237 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIE-------------D-FFVKRG 237 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCC-------------C-CeEEec
Confidence 444444567789999999999999998888876 8999999999999999999998884 4 899999
Q ss_pred cccccccccccCCCcccEEEEecccccc----c---ChhhHHHHHHHHhhcccCCcEEEe
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCL----L---YESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L----~---~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
|+.+++ ++.++||+|++++. |+. . .......++..+.+.|+|||.++.
T Consensus 238 D~~~l~----~~~~~~D~Iv~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 238 DATKLP----LSSESVDAIATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred chhcCC----cccCCCCEEEECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 999987 66689999999853 221 1 123467899999999999999874
No 79
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.18 E-value=6.9e-11 Score=111.56 Aligned_cols=96 Identities=26% Similarity=0.313 Sum_probs=74.1
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..++++|||||||+|.++..+++.|. +|+|+|+++.+++. . . +.....+.....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~-----------------~-~~~~~~~~~~~~- 73 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R-----------------N-VVFDNFDAQDPP- 73 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T-----------------T-SEEEEEECHTHH-
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h-----------------h-hhhhhhhhhhhh-
Confidence 57789999999999999999999998 99999999999865 1 1 112222222333
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.+.++||+|++..+ +.+-..+..++..+.++|||||.++...
T Consensus 74 ---~~~~~fD~i~~~~~---l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 74 ---FPDGSFDLIICNDV---LEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp ---CHSSSEEEEEEESS---GGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ---ccccchhhHhhHHH---HhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 45689999999644 3333468999999999999999999654
No 80
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.17 E-value=3e-10 Score=112.29 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=82.4
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++.+|||+|||+|.+++.++..++.+|++||.++.+++.|+++++.+++ .+++++++|+.+...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~--------------~~v~~~~~D~~~~l~- 116 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA--------------GNARVVNTNALSFLA- 116 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC--------------CcEEEEEchHHHHHh-
Confidence 46789999999999999977666778999999999999999999999887 579999999976431
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHh--hcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARD--QWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~--r~LkpgG~lip~~ 422 (633)
...++||+|++++. |. .+....++..+. .+|+|+|+++...
T Consensus 117 --~~~~~fDlV~~DPP-y~---~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 117 --QPGTPHNVVFVDPP-FR---KGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred --hcCCCceEEEECCC-CC---CChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 12356999999975 21 234445555444 3588998888654
No 81
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.17 E-value=3e-10 Score=118.66 Aligned_cols=105 Identities=28% Similarity=0.431 Sum_probs=84.1
Q ss_pred CEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
.+|||+|||+|.+++.+++... .+|+|+|+|+.+++.|+++++.+++. ++++++++|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-------------~~v~~~~~d~~~~----- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-------------HRVEFIQSNLFEP----- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CcEEEEECchhcc-----
Confidence 6999999999999999998743 59999999999999999999999885 6799999998763
Q ss_pred cCCCcccEEEEeccccc-----------ccCh------------hhHHHHHHHHhhcccCCcEEEeec
Q 006731 378 IQPHSVDVLVSEWMGYC-----------LLYE------------SMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~-----------L~~e------------~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++..+||+|||++. |. ..+| .....++....++|+|||.++...
T Consensus 178 ~~~~~fDlIvsNPP-yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 178 LAGQKIDIIVSNPP-YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcCCCccEEEECCC-CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 34448999999741 11 1112 135678888899999999998543
No 82
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.16 E-value=1.7e-10 Score=129.00 Aligned_cols=114 Identities=25% Similarity=0.384 Sum_probs=89.2
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
..+.......++++|||||||+|.++..+++.+. +|+|||+++.|++.+++. ++.. .++++++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~---~~~~-------------~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESI---NGHY-------------KNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHH---hccC-------------CceEEEE
Confidence 3445555556778999999999999999999854 999999999999776542 2222 6799999
Q ss_pred ccccc--cccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 367 GMVEE--LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 367 gd~e~--l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+++.. ++ ++.++||+|++.++-+++ ....+..++..+.++|||||.++...
T Consensus 90 ~d~~~~~~~----~~~~~fD~I~~~~~l~~l-~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 90 ADVTSPDLN----ISDGSVDLIFSNWLLMYL-SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ecccccccC----CCCCCEEEEehhhhHHhC-CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99964 44 567899999998764444 33457889999999999999998754
No 83
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.16 E-value=3.8e-10 Score=112.65 Aligned_cols=108 Identities=21% Similarity=0.164 Sum_probs=83.6
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
...+.......++.+|||||||+|.++..+++.+. +|+++|.++.+++.|+++++..++ .+++++
T Consensus 67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~--------------~~v~~~ 131 (212)
T PRK00312 67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGL--------------HNVSVR 131 (212)
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCC--------------CceEEE
Confidence 33444455667889999999999999998888854 899999999999999999998887 569999
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++|..+.. .+.++||+|++... . ..+.....+.|+|||.++..
T Consensus 132 ~~d~~~~~----~~~~~fD~I~~~~~---~------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 132 HGDGWKGW----PAYAPFDRILVTAA---A------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred ECCcccCC----CcCCCcCEEEEccC---c------hhhhHHHHHhcCCCcEEEEE
Confidence 99986532 22378999997431 1 22334567899999998843
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=3.8e-10 Score=118.98 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=83.8
Q ss_pred CEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|+++++.+++. ++|+++++|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-------------~~i~~~~~D~~~~----- 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-------------DRVTLIESDLFAA----- 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-------------CcEEEEECchhhh-----
Confidence 689999999999999999873 359999999999999999999999886 7899999998653
Q ss_pred cCCCcccEEEEecccccc-----------cCh------------hhHHHHHHHHhhcccCCcEEEee
Q 006731 378 IQPHSVDVLVSEWMGYCL-----------LYE------------SMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L-----------~~e------------~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++.++||+||+++. |.- .++ .....++....++|+|||.++..
T Consensus 197 l~~~~fDlIvsNPP-yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 197 LPGRRYDLIVSNPP-YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccEEEECCC-CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 34468999999742 110 111 22457888899999999999853
No 85
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.15 E-value=3.9e-10 Score=112.77 Aligned_cols=117 Identities=26% Similarity=0.182 Sum_probs=82.7
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS-EGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~-~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++.+|||+|||.|.-+.++|+.|. .|+|||+|+.+++.|.+ ++++....... +..-....+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4678999999999999999999999 89999999999986533 33331000000 0000113579999999998762
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
...++||.|+-..... -+...+...++..+.++|||||.++.
T Consensus 109 ---~~~~~fD~i~D~~~~~-~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ---ADLGPVDAVYDRAALI-ALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ---ccCCCcCEEEechhhc-cCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 1135799998643212 34566778899999999999998663
No 86
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.15 E-value=3.1e-10 Score=123.15 Aligned_cols=110 Identities=27% Similarity=0.323 Sum_probs=85.8
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
+.|.+...+.++.+|||||||+|.++..+++. |+ +|+|+|+|+.+++.|+++++ ++ .+++.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l---------------~v~~~ 218 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL---------------PVEIR 218 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC---------------eEEEE
Confidence 34444556678999999999999999999986 55 89999999999999998774 32 37888
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.+|..++. ++||+|+|..|-..+ +...+..++..+.++|||||.++...
T Consensus 219 ~~D~~~l~-------~~fD~Ivs~~~~ehv-g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 219 LQDYRDLN-------GQFDRIVSVGMFEHV-GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred ECchhhcC-------CCCCEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 88876542 689999986542222 23456789999999999999999653
No 87
>PRK04266 fibrillarin; Provisional
Probab=99.15 E-value=5.1e-10 Score=112.88 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=80.5
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccc
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e 370 (633)
...+.++.+|||+|||+|.++..+++. +..+|+|+|.++.|++.+.++++.. .+|.++.+|+.
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----------------~nv~~i~~D~~ 130 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----------------KNIIPILADAR 130 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----------------CCcEEEECCCC
Confidence 456778999999999999999999987 3458999999999998777766532 46888999987
Q ss_pred ccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 371 ~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
+......++ ++||+|+++.. .......++..+.++|||||.++..
T Consensus 131 ~~~~~~~l~-~~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 131 KPERYAHVV-EKVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred Ccchhhhcc-ccCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 521001133 56999997531 1112345688999999999999854
No 88
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=1.2e-10 Score=112.13 Aligned_cols=102 Identities=26% Similarity=0.336 Sum_probs=84.6
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE-EEEccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME-VVQGMVEELGESMQ 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~-vi~gd~e~l~~~~~ 377 (633)
..||+||||||.--.+.--....+|+++|.++.|-+.|.+.++++.. .+++ |+.++.+++++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~--------------~~~~~fvva~ge~l~~--- 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP--------------LQVERFVVADGENLPQ--- 140 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC--------------cceEEEEeechhcCcc---
Confidence 35899999999776665543334999999999999999999998865 5666 99999999984
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++++++|+||+-.. |.........|.+..|+|+|||++++
T Consensus 141 l~d~s~DtVV~Tlv---LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 141 LADGSYDTVVCTLV---LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred cccCCeeeEEEEEE---EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 78899999998543 55556778899999999999999983
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=5.2e-10 Score=108.78 Aligned_cols=105 Identities=29% Similarity=0.419 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc-EEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK-MEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~-I~vi~gd~e~l~~ 374 (633)
.++++|||+|||+|.++..+++.++ +|+|+|.|+.+++.|++++..+++. ++ +.++++|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~-------------~~~~~~~~~d~~~~-- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIR-------------NNGVEVIRSDLFEP-- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCC-------------CcceEEEecccccc--
Confidence 5778999999999999999999864 9999999999999999999888774 33 88999987653
Q ss_pred ccccCCCcccEEEEecccccc-------------------cChhhHHHHHHHHhhcccCCcEEEe
Q 006731 375 SMQIQPHSVDVLVSEWMGYCL-------------------LYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L-------------------~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++..+||+|+++.. |.. .+...+..++.++.++|||||.++.
T Consensus 86 ---~~~~~~d~vi~n~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 86 ---FRGDKFDVILFNPP-YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ---ccccCceEEEECCC-cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34458999998643 111 0122356789999999999998874
No 90
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.14 E-value=3.9e-10 Score=120.51 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
....+|||+|||+|.++..+++.+. .+|+++|+|+.|++.|+++++.|++. .+++.+|+...
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~---------------~~~~~~D~~~~-- 257 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE---------------GEVFASNVFSD-- 257 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------CEEEEcccccc--
Confidence 3446899999999999999998753 58999999999999999999998874 45677776542
Q ss_pred ccccCCCcccEEEEeccccc-cc-ChhhHHHHHHHHhhcccCCcEEEe
Q 006731 375 SMQIQPHSVDVLVSEWMGYC-LL-YESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~-L~-~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
. .++||+|||++..+. +. .......++....++|||||.++.
T Consensus 258 ---~-~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 258 ---I-KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred ---c-CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 2 478999999864322 11 123567899999999999999974
No 91
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.14 E-value=4.3e-10 Score=116.27 Aligned_cols=115 Identities=15% Similarity=0.057 Sum_probs=90.5
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...+|.+|||+|||+|..+..+++. + ...|+|+|+++.+++.++++++.+++ .+|+++++|...
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~--------------~~v~~~~~D~~~ 133 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV--------------LNVAVTNFDGRV 133 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CcEEEecCCHHH
Confidence 3568899999999999999998876 2 35899999999999999999999988 569999999887
Q ss_pred cccccccCCCcccEEEEecccccc----c--------Chhh-------HHHHHHHHhhcccCCcEEEeecceeE
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCL----L--------YESM-------LSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L----~--------~e~~-------l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
+. ...++||+|++....+.. . .+.. ...+|....++|||||+++.++|++.
T Consensus 134 ~~----~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 134 FG----AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred hh----hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 65 334679999986421211 1 1111 23588889999999999998888864
No 92
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.13 E-value=2.1e-10 Score=108.44 Aligned_cols=113 Identities=25% Similarity=0.338 Sum_probs=89.7
Q ss_pred CCCC-EEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 296 MKGA-VVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 296 ~~~~-~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
.+.+ +|||+|||.|.+...+++.|. .+.+|||.|+.+++.|+.++++++++ +.|+|.+.|+.+-.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-------------n~I~f~q~DI~~~~ 131 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-------------NEIRFQQLDITDPD 131 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-------------cceeEEEeeccCCc
Confidence 3444 999999999999999999986 45999999999999999999999997 77999999998765
Q ss_pred cccccCCCcccEEEEec-ccc-cccC---hhhHHHHHHHHhhcccCCcEEEeeccee
Q 006731 374 ESMQIQPHSVDVLVSEW-MGY-CLLY---ESMLSSVLFARDQWLKPGGAILPDTATM 425 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~-mg~-~L~~---e~~l~~vl~a~~r~LkpgG~lip~~~t~ 425 (633)
+..++||+|.--. ++. .|.. ...+..++..+.++|+|||++++.+|+.
T Consensus 132 ----~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 132 ----FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ----ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 5568899987421 111 1221 2224557888899999999999888765
No 93
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.7e-10 Score=106.43 Aligned_cols=84 Identities=31% Similarity=0.403 Sum_probs=72.4
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
......|++|+|+|||||+|++.++-.||.+|+|||+.+.+++.|++++.+. . ++|.|+.+|+.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~-------------g~v~f~~~dv~~ 104 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--L-------------GDVEFVVADVSD 104 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--C-------------CceEEEEcchhh
Confidence 4457889999999999999999999999999999999999999999999883 2 789999999998
Q ss_pred cccccccCCCcccEEEEec-ccccccC
Q 006731 372 LGESMQIQPHSVDVLVSEW-MGYCLLY 397 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~-mg~~L~~ 397 (633)
+. .++|.+|.++ +|.-.-+
T Consensus 105 ~~-------~~~dtvimNPPFG~~~rh 124 (198)
T COG2263 105 FR-------GKFDTVIMNPPFGSQRRH 124 (198)
T ss_pred cC-------CccceEEECCCCcccccc
Confidence 76 5799999884 5554333
No 94
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.12 E-value=3.8e-10 Score=131.63 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=90.6
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++++|||+|||||.+++.+++.|+++|++||.|+.+++.|+++++.|++.. .+++++++|+.++...
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~------------~~v~~i~~D~~~~l~~ 604 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG------------RQHRLIQADCLAWLKE 604 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc------------cceEEEEccHHHHHHH
Confidence 4689999999999999999999999899999999999999999999999831 4799999999875311
Q ss_pred cccCCCcccEEEEeccccccc---------ChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 376 MQIQPHSVDVLVSEWMGYCLL---------YESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~---------~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
+ .++||+||+++. ++.. .......++....++|+|||.++.+++
T Consensus 605 --~-~~~fDlIilDPP-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 605 --A-REQFDLIFIDPP-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred --c-CCCcCEEEECCC-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2 468999999863 2211 122356678888999999999987654
No 95
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=3.9e-10 Score=111.18 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=84.7
Q ss_pred CCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+.+|||||||+|.++..+|+.. ...|+|||+++.+++.|+++++.+++ .+++++++|+.++...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l--------------~ni~~i~~d~~~~~~~ 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL--------------KNLHVLCGDANELLDK 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC--------------CCEEEEccCHHHHHHh
Confidence 45699999999999999998873 35899999999999999999988887 6899999999876421
Q ss_pred cccCCCcccEEEEeccccccc--C---hhhHHHHHHHHhhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLL--Y---ESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~--~---e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. ++.+.+|.|++.......- + .-..+.++..+.++|||||.++..+
T Consensus 82 ~-~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 82 F-FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred h-CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 1 3446899999763211100 0 0012568899999999999998544
No 96
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.11 E-value=5.9e-10 Score=120.41 Aligned_cols=129 Identities=21% Similarity=0.244 Sum_probs=95.1
Q ss_pred hhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCC
Q 006731 270 GIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWD 348 (633)
Q Consensus 270 ~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~ 348 (633)
.+....+-.+..++.+.+.+.... .++.+|||+|||+|.+++.+++. +..+|+|+|+|+.|++.|+++++.++
T Consensus 226 ~V~p~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g---- 299 (423)
T PRK14966 226 AVNPNVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG---- 299 (423)
T ss_pred EeCCCccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----
Confidence 333444445566777877776643 35679999999999999998875 44699999999999999999998765
Q ss_pred CCCCCCCCCCCCcEEEEEccccccccccccC-CCcccEEEEecccccccC-----------h------------hhHHHH
Q 006731 349 RPQSEGNINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLY-----------E------------SMLSSV 404 (633)
Q Consensus 349 ~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~-~~~~DvIvse~mg~~L~~-----------e------------~~l~~v 404 (633)
.+++++++|+.+.. ++ .++||+|||++. |.-.. | ..+..+
T Consensus 300 -----------~rV~fi~gDl~e~~----l~~~~~FDLIVSNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~I 363 (423)
T PRK14966 300 -----------ARVEFAHGSWFDTD----MPSEGKWDIIVSNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTL 363 (423)
T ss_pred -----------CcEEEEEcchhccc----cccCCCccEEEECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHH
Confidence 46999999986643 22 357999999863 32111 0 123467
Q ss_pred HHHHhhcccCCcEEEe
Q 006731 405 LFARDQWLKPGGAILP 420 (633)
Q Consensus 405 l~a~~r~LkpgG~lip 420 (633)
+....++|+|||.++.
T Consensus 364 i~~a~~~LkpgG~lil 379 (423)
T PRK14966 364 AQGAPDRLAEGGFLLL 379 (423)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 7777889999999873
No 97
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.10 E-value=3.2e-10 Score=121.95 Aligned_cols=120 Identities=19% Similarity=0.187 Sum_probs=98.8
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+|++||++-|-||.+|+.||..||++|++||+|..+++.|+++++.||+.. .++.++++|+.++-..
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~------------~~~~~i~~Dvf~~l~~ 283 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG------------DRHRFIVGDVFKWLRK 283 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc------------cceeeehhhHHHHHHH
Confidence 4599999999999999999999999999999999999999999999999852 6799999999987644
Q ss_pred cccCCCcccEEEEeccccccc------ChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLL------YESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~------~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
..-...+||+||..+..+.-. .......++....++|+|||+++.++|+..+
T Consensus 284 ~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 284 AERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred HHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 434456999999987543211 1233567888889999999999988776543
No 98
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.09 E-value=1.1e-09 Score=108.98 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=76.3
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
..++.+|||||||+|.++..+++. +..+|+|||+|+.|++.|+++. .++.++++++.+ +
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------------------~~~~~~~~d~~~-~ 100 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------------------PNINIIQGSLFD-P 100 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------------------CCCcEEEeeccC-C
Confidence 346789999999999999998886 4459999999999999888653 346778888877 5
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++.++||+|++..+-+++ ....+..++..+.+.++ +.++.
T Consensus 101 ----~~~~sfD~V~~~~vL~hl-~p~~~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 101 ----FKDNFFDLVLTKGVLIHI-NPDNLPTAYRELYRCSN--RYILI 140 (204)
T ss_pred ----CCCCCEEEEEECChhhhC-CHHHHHHHHHHHHhhcC--cEEEE
Confidence 667899999986543333 34567788888888873 44443
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.09 E-value=1.4e-09 Score=110.98 Aligned_cols=116 Identities=28% Similarity=0.314 Sum_probs=87.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
.+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|+++.+++.|++++..+++ .++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~ 139 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL--------------DNV 139 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CeE
Confidence 34444444322 34579999999999999999987 335999999999999999999998887 579
Q ss_pred EEEEccccccccccccCCCcccEEEEecccccccC------------h------------hhHHHHHHHHhhcccCCcEE
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLY------------E------------SMLSSVLFARDQWLKPGGAI 418 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~------------e------------~~l~~vl~a~~r~LkpgG~l 418 (633)
.++++|+.+. ++.++||+|++++. |.... + .....++..+.++|+|||.+
T Consensus 140 ~~~~~d~~~~-----~~~~~fD~Vi~npP-y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~ 213 (251)
T TIGR03534 140 TFLQSDWFEP-----LPGGKFDLIVSNPP-YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213 (251)
T ss_pred EEEECchhcc-----CcCCceeEEEECCC-CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEE
Confidence 9999998763 34578999999753 21100 0 11246788899999999998
Q ss_pred Ee
Q 006731 419 LP 420 (633)
Q Consensus 419 ip 420 (633)
+.
T Consensus 214 ~~ 215 (251)
T TIGR03534 214 LL 215 (251)
T ss_pred EE
Confidence 85
No 100
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=1.2e-09 Score=121.12 Aligned_cols=115 Identities=19% Similarity=0.226 Sum_probs=90.8
Q ss_pred CCCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccc
Q 006731 293 PSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e 370 (633)
....+|.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++++..|+ .+|+++.+|+.
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------~~v~~~~~Da~ 311 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--------------TIIETIEGDAR 311 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--------------CeEEEEeCccc
Confidence 34568899999999999999888875 235899999999999999999999888 57999999998
Q ss_pred ccccccccCCCcccEEEEecc----cccc--------cChhh-------HHHHHHHHhhcccCCcEEEeecceeE
Q 006731 371 ELGESMQIQPHSVDVLVSEWM----GYCL--------LYESM-------LSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 371 ~l~~~~~l~~~~~DvIvse~m----g~~L--------~~e~~-------l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
.+. +.++||+|+.... |.+. ..+.. ...++..+.++|||||+++.++|++.
T Consensus 312 ~~~-----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 312 SFS-----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred ccc-----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 765 3468999997532 2211 11111 23589999999999999999988874
No 101
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.08 E-value=7.2e-10 Score=114.55 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=83.1
Q ss_pred CCCCCEEEEECCCcch----HHHHHHHcCC------CeEEEEeCCHHHHHHHHHHHHh----CCCCC---------CCCC
Q 006731 295 LMKGAVVMDIGCGTGI----LSLFAAQAGA------SRVIAVEASEKMAAVATQIAKD----NDFWW---------DRPQ 351 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~----lsl~~a~aGa------~~V~aVD~S~~~~~~A~~~~~~----ngl~~---------~~~~ 351 (633)
..++.+|||+|||||- +++.+++.+. .+|+|+|+|+.|++.|++.+-. .+++. ....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999995 6777776532 3899999999999999875310 01100 0000
Q ss_pred CCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 352 ~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.........+|+|.++|+.+.+ .+.++||+|+|..+-+++ .......++..+.+.|+|||.++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~----~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAES----PPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCC----CccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0000112257999999999876 556899999995432222 33456789999999999999999543
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=1.1e-09 Score=123.02 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=83.7
Q ss_pred CCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.+++. ++++++++|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-------------~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-------------DRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-------------cceeeeecchhhh---
Confidence 3578999999999999988865 4459999999999999999999999886 7899999998643
Q ss_pred cccCCCcccEEEEeccccccc------------Ch------------hhHHHHHHHHhhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLL------------YE------------SMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~------------~e------------~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++.++||+|||++. |... +| ..+..++..+.++|+|||.++...
T Consensus 202 --~~~~~fDlIvsNPP-Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 202 --IEKQKFDFIVSNPP-YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred --CcCCCccEEEECCC-CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 33468999999752 2111 11 123457778889999999998643
No 103
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.07 E-value=1.4e-09 Score=109.13 Aligned_cols=117 Identities=24% Similarity=0.183 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-CCCCCCCcEEEEEccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE-GNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~-~~~~~~~~I~vi~gd~e~l~ 373 (633)
..++.+|||+|||.|..++++|+.|. +|+|||+|+.+++.|. .++++........ ..-....+|+++++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHH---HHcCCCccccccccccccccCceEEEECcccCCC
Confidence 34678999999999999999999999 8999999999998764 2444421000000 00112368999999999885
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.. ....||.|+-..+-. .+...+...++..+.++|+|||.++
T Consensus 111 ~~---~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AA---DLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cc---cCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 21 125799999654322 3456778899999999999999754
No 104
>PLN03075 nicotianamine synthase; Provisional
Probab=99.07 E-value=1.7e-09 Score=112.33 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=83.2
Q ss_pred CCCEEEEECCCcchH-HHHHH-Hc-CCCeEEEEeCCHHHHHHHHHHHHh-CCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 297 KGAVVMDIGCGTGIL-SLFAA-QA-GASRVIAVEASEKMAAVATQIAKD-NDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 297 ~~~~VLDVGcGtG~l-sl~~a-~a-Ga~~V~aVD~S~~~~~~A~~~~~~-ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
++++|+|||||.|.+ ++.++ ++ ...+++++|.++.+++.|++.++. .++. ++|+|..+|+.++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-------------~rV~F~~~Da~~~ 189 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-------------KRMFFHTADVMDV 189 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-------------CCcEEEECchhhc
Confidence 779999999998744 44333 33 235899999999999999999964 7776 8899999999876
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. ...++||+|++..+.++ .......++..+.+.|+|||.++...
T Consensus 190 ~----~~l~~FDlVF~~ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 190 T----ESLKEYDVVFLAALVGM--DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred c----cccCCcCEEEEeccccc--ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4 22468999998633221 12467889999999999999999554
No 105
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.4e-09 Score=113.18 Aligned_cols=101 Identities=31% Similarity=0.447 Sum_probs=80.5
Q ss_pred EEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 300 VVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
+|||+|||||.+++.++..+. ..|+|+|+|+.+++.|++++..|++ .++.+++++..+-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--------------~~~~~~~~dlf~~~----- 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--------------VRVLVVQSDLFEPL----- 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--------------ccEEEEeeeccccc-----
Confidence 899999999999999999965 4999999999999999999999998 56777777765432
Q ss_pred CCCcccEEEEeccccccc-----------Ch------------hhHHHHHHHHhhcccCCcEEEee
Q 006731 379 QPHSVDVLVSEWMGYCLL-----------YE------------SMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 379 ~~~~~DvIvse~mg~~L~-----------~e------------~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
. ++||+|||++. |.-. +| .....++....++|+|||.++..
T Consensus 174 ~-~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 174 R-GKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred C-CceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 2 49999999862 2111 11 12457888889999999998843
No 106
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.2e-09 Score=112.44 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=89.8
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
=-+.+..++....+.+|||+|||.|.+++.+++.. ..+|+-+|.|..+++.|+++++.|++. +..
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--------------~~~ 211 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--------------NTE 211 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--------------ccE
Confidence 34556666666666699999999999999999985 479999999999999999999999984 337
Q ss_pred EEEccccccccccccCCCcccEEEEecccccccCh--hhHHHHHHHHhhcccCCcEEE
Q 006731 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE--SMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e--~~l~~vl~a~~r~LkpgG~li 419 (633)
++.+++.+-. . ++||.|||++..+-.... ..-..++.+..+.|++||.+.
T Consensus 212 v~~s~~~~~v-----~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 212 VWASNLYEPV-----E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred EEEecccccc-----c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 7888876544 2 499999999753321111 112378899999999999987
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=1.9e-09 Score=111.72 Aligned_cols=123 Identities=28% Similarity=0.305 Sum_probs=92.2
Q ss_pred ChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 006731 278 DKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (633)
Q Consensus 278 D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~ 356 (633)
.+..++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++. +...
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~---------- 157 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG---------- 157 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC----------
Confidence 344566677766654445677899999999999999999884 4699999999999999999987 3333
Q ss_pred CCCCcEEEEEccccccccccccCCCcccEEEEeccccccc------------------------ChhhHHHHHHHHhhcc
Q 006731 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL------------------------YESMLSSVLFARDQWL 412 (633)
Q Consensus 357 ~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~------------------------~e~~l~~vl~a~~r~L 412 (633)
.++.++.+|+.+.. +.++||+|++++. |.-. +......++..+.++|
T Consensus 158 ---~~i~~~~~d~~~~~-----~~~~fD~Iv~npP-y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L 228 (275)
T PRK09328 158 ---ARVEFLQGDWFEPL-----PGGRFDLIVSNPP-YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL 228 (275)
T ss_pred ---CcEEEEEccccCcC-----CCCceeEEEECCC-cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc
Confidence 68999999985432 3478999999742 2110 1122456778888999
Q ss_pred cCCcEEEe
Q 006731 413 KPGGAILP 420 (633)
Q Consensus 413 kpgG~lip 420 (633)
+|||.++.
T Consensus 229 k~gG~l~~ 236 (275)
T PRK09328 229 KPGGWLLL 236 (275)
T ss_pred ccCCEEEE
Confidence 99999985
No 108
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.3e-09 Score=120.58 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=92.6
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...+|.+|||+|||+|..+..+++. + ..+|+|+|.++.+++.++++++.+|+ .+|+++++|+.+
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~--------------~~v~~~~~D~~~ 314 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL--------------KSIKILAADSRN 314 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC--------------CeEEEEeCChhh
Confidence 4567899999999999999999886 2 35899999999999999999999998 569999999987
Q ss_pred cccccccCCCcccEEEEeccccc--cc--Ch--------hh-------HHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYC--LL--YE--------SM-------LSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~--L~--~e--------~~-------l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
+........++||.|++....++ .. +. .. ...++.+..++|||||.++.++|+++.
T Consensus 315 ~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 315 LLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred cccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 64211112468999998643211 11 11 11 357889999999999999999888753
No 109
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.06 E-value=7.9e-10 Score=112.21 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=90.7
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
+...+.+ ..++++|||||||+|..++.++++ +..+|+++|.++.+++.|+++++.+|+. ++|
T Consensus 59 ~L~~l~~---~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-------------~~i 122 (234)
T PLN02781 59 FLSMLVK---IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-------------HKI 122 (234)
T ss_pred HHHHHHH---HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CcE
Confidence 4444443 356789999999999988877775 3569999999999999999999999997 899
Q ss_pred EEEEcccccccccc--ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 363 EVVQGMVEELGESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 363 ~vi~gd~e~l~~~~--~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
+++.|++.+..... ..+.++||+|+... .......++..+.++|+|||.++.+..-
T Consensus 123 ~~~~gda~~~L~~l~~~~~~~~fD~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 123 NFIQSDALSALDQLLNNDPKPEFDFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEEEccHHHHHHHHHhCCCCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99999998753110 01136899999643 1234567788889999999999976543
No 110
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.06 E-value=2.3e-09 Score=107.97 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=78.9
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+.. +++.++.+++..
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~-------------~~i~~~~~d~~~--- 123 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLA-------------GNITFEVGDLES--- 123 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCc-------------cCcEEEEcCchh---
Confidence 35678999999999999999999987 6999999999999999998877765 689999998432
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..++||+|++..+-+. .....+..++..+.+.+++++++.
T Consensus 124 ----~~~~fD~v~~~~~l~~-~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 ----LLGRFDTVVCLDVLIH-YPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ----ccCCcCEEEEcchhhc-CCHHHHHHHHHHHHhhcCCeEEEE
Confidence 2468999998432111 123456778888877765544443
No 111
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.06 E-value=8.2e-10 Score=114.63 Aligned_cols=91 Identities=20% Similarity=0.333 Sum_probs=73.1
Q ss_pred CCCEEEEECCCcchHHHHHHHcCC----CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGA----SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa----~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
++.+|||||||+|.++..+++... ..|+|+|+|+.|++.|+++. .+++++.+++.++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------------------~~~~~~~~d~~~l 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------------------PQVTFCVASSHRL 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------------------CCCeEEEeecccC
Confidence 457899999999999988877521 37999999999998887642 4578999999988
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+ ++.++||+|++... +..+.++.|+|||||.++.
T Consensus 146 p----~~~~sfD~I~~~~~----------~~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 146 P----FADQSLDAIIRIYA----------PCKAEELARVVKPGGIVIT 179 (272)
T ss_pred C----CcCCceeEEEEecC----------CCCHHHHHhhccCCCEEEE
Confidence 8 77889999997321 2235678899999999984
No 112
>PHA03412 putative methyltransferase; Provisional
Probab=99.06 E-value=1.2e-09 Score=109.36 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=78.1
Q ss_pred CCCEEEEECCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a----Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.+.+|||+|||+|.+++.+++. +..+|+|||+++.+++.|++++ .++.++++|+...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------------------~~~~~~~~D~~~~ 109 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------------------PEATWINADALTT 109 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------------------cCCEEEEcchhcc
Confidence 3679999999999999999875 2348999999999999998653 3478899999876
Q ss_pred ccccccCCCcccEEEEeccccccc---------ChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLL---------YESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~---------~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. + .++||+||+++.-+-+. +-.....++....+++++|+.|+|..
T Consensus 110 ~----~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 110 E----F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred c----c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 5 4 46899999996311111 11224557777778999999999876
No 113
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=1.7e-09 Score=119.44 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
...+|.+|||+|||+|..++.+++.+. .+|+|+|.++.+++.++++++.+|+ . ++++++|+.++
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--------------~-~~~~~~D~~~~ 305 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--------------K-ATVIVGDARDP 305 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------C-eEEEEcCcccc
Confidence 456889999999999999999998753 5999999999999999999998886 3 68999999875
Q ss_pred ccccccCCCcccEEEEecccc--cc----------cChhh-------HHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 373 GESMQIQPHSVDVLVSEWMGY--CL----------LYESM-------LSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~--~L----------~~e~~-------l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
... ++.++||.|+++...+ +. ..+.. ...++....++|||||.++.++|+++.
T Consensus 306 ~~~--~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 306 AQW--WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred hhh--cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 411 2346799999764211 11 11111 246888899999999999998887643
No 114
>PRK04457 spermidine synthase; Provisional
Probab=99.05 E-value=1.3e-09 Score=112.61 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=88.4
Q ss_pred HHHHHHHhCCC-CCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 006731 284 SYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (633)
Q Consensus 284 ~y~~aI~~~~~-~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~ 361 (633)
.|.+++..... ..++++|||||||+|.++..+++. +..+|++||+++.+++.|++.+..++.. ++
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-------------~r 118 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-------------ER 118 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-------------Cc
Confidence 35555533221 235689999999999999988876 4458999999999999999987655544 78
Q ss_pred EEEEEccccccccccccCCCcccEEEEeccccc-ccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYC-LLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 362 I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~-L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++++.+|..+... ...++||+|++...... ....-....++..+.+.|+|||+++..
T Consensus 119 v~v~~~Da~~~l~---~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 119 FEVIEADGAEYIA---VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eEEEECCHHHHHH---hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 9999999877532 12368999998643211 111112367899999999999999853
No 115
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=1.5e-09 Score=106.65 Aligned_cols=110 Identities=18% Similarity=0.131 Sum_probs=82.5
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++++|||++||+|.+++.++..|+++|++||.++.+++.++++++.+++. ++++++++|+.+....
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-------------~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-------------EQAEVVRNSALRALKF 114 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-------------ccEEEEehhHHHHHHH
Confidence 568999999999999999999999999999999999999999999999986 6899999999664211
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHH--hhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFAR--DQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~--~r~LkpgG~lip~~ 422 (633)
..-....+|+|+..+. |.. .....++..+ ..+|+++|+++...
T Consensus 115 ~~~~~~~~dvv~~DPP-y~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPP-FFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred hhccCCCceEEEECcC-CCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 0011124788887652 322 2223333333 45899999988554
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=1.5e-09 Score=119.64 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=91.2
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...+|.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++..|+ .+++++++|+..
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~--------------~~v~~~~~Da~~ 299 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL--------------SSIEIKIADAER 299 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CeEEEEECchhh
Confidence 4578899999999999999988886 245999999999999999999999888 569999999987
Q ss_pred cccccccCCCcccEEEEeccc--cccc--Ch---------------hhHHHHHHHHhhcccCCcEEEeecceeE
Q 006731 372 LGESMQIQPHSVDVLVSEWMG--YCLL--YE---------------SMLSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg--~~L~--~e---------------~~l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
+.. ...++||.|++.... .+.. .. .....++....++|||||.++.++|++.
T Consensus 300 l~~---~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 300 LTE---YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhh---hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 642 224689999986422 2111 11 0124578888999999999999999853
No 117
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=2.1e-09 Score=113.66 Aligned_cols=106 Identities=24% Similarity=0.200 Sum_probs=81.8
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAG-A-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
.+.+...+.++.+|||||||+|.++..+++.. . .+|+|||.++.+++.|+++++.++. ++++++
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--------------~nV~~i 136 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--------------ENVIFV 136 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEE
Confidence 34444556788999999999999999999863 2 3799999999999999999998887 679999
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++|..+.. ....+||+|++.. .+ ..+.....+.|+|||.++.
T Consensus 137 ~gD~~~~~----~~~~~fD~Ii~~~---g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 137 CGDGYYGV----PEFAPYDVIFVTV---GV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred eCChhhcc----cccCCccEEEECC---ch------HHhHHHHHHhcCCCCEEEE
Confidence 99987654 2336799999742 11 2223445678999998764
No 118
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.04 E-value=2e-09 Score=91.91 Aligned_cols=103 Identities=33% Similarity=0.405 Sum_probs=82.0
Q ss_pred EEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccC
Q 006731 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~ 379 (633)
+|||+|||+|.++..+++.+..+++++|.++.++..+++....++. .+++++.+++.+... .+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--------------DNVEVLKGDAEELPP---EA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--------------cceEEEEcChhhhcc---cc
Confidence 4899999999999999886667999999999999888764443333 679999999988762 14
Q ss_pred CCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 380 ~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
..++|+|++..+.+.. ......++..+.+.|+|||.++..
T Consensus 64 ~~~~d~i~~~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 5789999986543221 567788999999999999999865
No 119
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.04 E-value=2.7e-09 Score=112.58 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
...+.......++.+|||||||+|.++..++++.. .+|+++|. +.+++.|++++...++. ++|++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-------------~rv~~ 203 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-------------DRMRG 203 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-------------ceEEE
Confidence 34455555566778999999999999999999843 48999997 78899999999998887 89999
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+.+|+.+.+ ++ .+|+|+...+-|. ..+.....++..+.+.|+|||+++...
T Consensus 204 ~~~d~~~~~----~~--~~D~v~~~~~lh~-~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 204 IAVDIYKES----YP--EADAVLFCRILYS-ANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EecCccCCC----CC--CCCEEEeEhhhhc-CChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999998755 44 3699875433221 123445678999999999999998654
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.04 E-value=2e-09 Score=118.85 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=90.6
Q ss_pred CCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
....+|.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++++..|+. ..++++.++...
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-------------~~v~~~~~d~~~ 300 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-------------IKAETKDGDGRG 300 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEecccccc
Confidence 34568899999999999999999886 4459999999999999999999998874 455667777765
Q ss_pred cccccccCCCcccEEEEecc--cccccC--hh---------------hHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 372 LGESMQIQPHSVDVLVSEWM--GYCLLY--ES---------------MLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~m--g~~L~~--e~---------------~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
.... .+.++||.|++... |.+.+. .. ....+|....++|||||.++.++|++..
T Consensus 301 ~~~~--~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 301 PSQW--AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred cccc--ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 4310 13568999997632 222211 11 1256888999999999999999988743
No 121
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.03 E-value=2.2e-09 Score=113.35 Aligned_cols=105 Identities=24% Similarity=0.202 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++++..+.. +....++++..+|++++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~---------~~~~~~~~f~~~Dl~~l~-- 210 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAA---------LPPEVLPKFEANDLESLS-- 210 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccc---------cccccceEEEEcchhhcC--
Confidence 4678999999999999999999986 8999999999999999988754220 000146888888876543
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++||+|+|..+.+++ .......++..+.+ +.+||+++
T Consensus 211 -----~~fD~Vv~~~vL~H~-p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 211 -----GKYDTVTCLDVLIHY-PQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred -----CCcCEEEEcCEEEec-CHHHHHHHHHHHHh-hcCCEEEE
Confidence 689999985432222 12233455655554 45666655
No 122
>PRK06202 hypothetical protein; Provisional
Probab=99.03 E-value=1.1e-09 Score=110.84 Aligned_cols=102 Identities=21% Similarity=0.243 Sum_probs=74.5
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc----CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA----GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a----Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
..++.+|||||||+|.++..+++. |. .+|+|+|+|+.|++.|++.... .++++..++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----------------~~~~~~~~~~ 120 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----------------PGVTFRQAVS 120 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----------------CCCeEEEEec
Confidence 356789999999999998888753 32 3899999999999999876543 3355666666
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..++ .++++||+|++..+-+.+. ...+..++..+.++++ ++.++
T Consensus 121 ~~l~----~~~~~fD~V~~~~~lhh~~-d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 121 DELV----AEGERFDVVTSNHFLHHLD-DAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred cccc----ccCCCccEEEECCeeecCC-hHHHHHHHHHHHHhcC-eeEEE
Confidence 6665 4567999999975433332 3346789999999988 44433
No 123
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=1.9e-09 Score=119.71 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=92.0
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
.....++.+|||+|||+|..++.+++. +..+|+|+|+++.+++.++++++.+|+ .+|+++++|+
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--------------~~v~~~~~D~ 310 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--------------TNIETKALDA 310 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEEeCCc
Confidence 334567899999999999999999886 346999999999999999999999998 4599999999
Q ss_pred cccccccccCCCcccEEEEecc--ccccc----------Chhh-------HHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWM--GYCLL----------YESM-------LSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~m--g~~L~----------~e~~-------l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
.++... ++ ++||+|++... |.... .+.. ...++....++|||||.++.++|++..
T Consensus 311 ~~~~~~--~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 311 RKVHEK--FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred ccccch--hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 876411 33 68999998743 11111 1111 135788899999999999988877643
No 124
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.03 E-value=2.3e-09 Score=115.17 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=87.3
Q ss_pred CCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..+..|||||||+|..++.+|+.. ...|+|||+++.+++.|.+.+..+++ .+|.++++|+..+..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL--------------~NV~~i~~DA~~ll~ 186 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL--------------KNLLIINYDARLLLE 186 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEECCHHHhhh
Confidence 456799999999999999999884 35899999999999999999999988 679999999987632
Q ss_pred ccccCCCcccEEEEecccccccChh------hHHHHHHHHhhcccCCcEEEeec
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYES------MLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~------~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. ++++++|.|++... ..+.. ..+.++..+.|+|+|||.+...+
T Consensus 187 ~--~~~~s~D~I~lnFP---dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 187 L--LPSNSVEKIFVHFP---VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred h--CCCCceeEEEEeCC---CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 56789999997532 11111 12678999999999999998655
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.01 E-value=3e-09 Score=102.50 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=80.7
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
|.......++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++.. . .+++++++|
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~--------------~~v~ii~~D 67 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--A--------------DNLTVIHGD 67 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--C--------------CCEEEEECc
Confidence 4444456678899999999999999999985 5999999999999999887743 2 679999999
Q ss_pred ccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+.++. ++..++|+|+++.. |.. ....+..++.. ..+.++|.++...
T Consensus 68 ~~~~~----~~~~~~d~vi~n~P-y~~-~~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 68 ALKFD----LPKLQPYKVVGNLP-YNI-STPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred hhcCC----ccccCCCEEEECCC-ccc-HHHHHHHHHhc--CCCcceEEEEEEH
Confidence 99987 65557999999753 332 23344444432 2245777777443
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.9e-09 Score=105.88 Aligned_cols=104 Identities=22% Similarity=0.280 Sum_probs=83.3
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
.+...+.+.++.+||+||||+|..+..+|+... +|++||..+...+.|+++++..|+ .+|.++++
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~--------------~nV~v~~g 127 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGY--------------ENVTVRHG 127 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCC--------------CceEEEEC
Confidence 345556788999999999999999999999854 999999999999999999999999 56999999
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
|...-- -+..+||.|+...- ....+.. +.+.||+||+++
T Consensus 128 DG~~G~----~~~aPyD~I~Vtaa-----a~~vP~~----Ll~QL~~gGrlv 166 (209)
T COG2518 128 DGSKGW----PEEAPYDRIIVTAA-----APEVPEA----LLDQLKPGGRLV 166 (209)
T ss_pred CcccCC----CCCCCcCEEEEeec-----cCCCCHH----HHHhcccCCEEE
Confidence 987643 23478999997431 1122233 346799999998
No 127
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.00 E-value=7.9e-10 Score=107.48 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 006731 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (633)
Q Consensus 280 ~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~ 358 (633)
.|+.-.++.+.+ ..+.+..+|.|+|||+|..+..+++. +...|+|+|.|+.|++.|+++.
T Consensus 14 eRtRPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------------ 74 (257)
T COG4106 14 ERTRPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------------ 74 (257)
T ss_pred hccCcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------------------
Confidence 455555665554 35566789999999999999999998 4459999999999999987654
Q ss_pred CCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 359 ~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
.+++|..+|+.++. |....|+|+++..-. +-.+-..++..+...|.|||.+-.....
T Consensus 75 -p~~~f~~aDl~~w~-----p~~~~dllfaNAvlq---WlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 75 -PDATFEEADLRTWK-----PEQPTDLLFANAVLQ---WLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred -CCCceecccHhhcC-----CCCccchhhhhhhhh---hccccHHHHHHHHHhhCCCceEEEECCC
Confidence 67899999999997 668999999986533 3344566777777899999999855433
No 128
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.99 E-value=1.1e-09 Score=108.90 Aligned_cols=108 Identities=27% Similarity=0.335 Sum_probs=79.6
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
....+.+.+.+.+|.+|||||||+|.++..+++. |. .+|++||..+.+++.|+++++..++ .+|
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--------------~nv 125 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--------------DNV 125 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--------------HSE
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--------------Cce
Confidence 3344555566889999999999999999999987 54 3799999999999999999999888 689
Q ss_pred EEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+++++|...-. ....+||.|++.. .. +..+ .+..+.|++||+++
T Consensus 126 ~~~~gdg~~g~----~~~apfD~I~v~~---a~--~~ip----~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 126 EVVVGDGSEGW----PEEAPFDRIIVTA---AV--PEIP----EALLEQLKPGGRLV 169 (209)
T ss_dssp EEEES-GGGTT----GGG-SEEEEEESS---BB--SS------HHHHHTEEEEEEEE
T ss_pred eEEEcchhhcc----ccCCCcCEEEEee---cc--chHH----HHHHHhcCCCcEEE
Confidence 99999987543 2346899999743 12 1222 33456799999998
No 129
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.98 E-value=4e-09 Score=116.96 Aligned_cols=118 Identities=21% Similarity=0.213 Sum_probs=87.7
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 006731 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (633)
Q Consensus 282 ~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~ 361 (633)
++...+.+.......++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|+++++.+++ .+
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~--------------~~ 346 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL--------------DN 346 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC--------------Cc
Confidence 44455555555556678999999999999999999887 4999999999999999999999988 57
Q ss_pred EEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 362 I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++++++|+.+......+...+||+|++++.-. + +..++..+.+ ++|+++++.+
T Consensus 347 v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 347 VTFYHANLEEDFTDQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred eEEEEeChHHhhhhhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEEE
Confidence 99999999764211112346799999986422 1 2234455544 6888887754
No 130
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.98 E-value=3.1e-09 Score=106.09 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=73.2
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
+.++.+|||||||||.++..+++. |. .+|+|||+++ | +.. .+++++++|+++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--------------~~v~~i~~D~~~~ 103 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--------------VGVDFLQGDFRDE 103 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--------------CCcEEEecCCCCh
Confidence 467889999999999999998887 33 5899999998 1 223 4589999999885
Q ss_pred ccc----cccCCCcccEEEEecccccccCh--h------hHHHHHHHHhhcccCCcEEEe
Q 006731 373 GES----MQIQPHSVDVLVSEWMGYCLLYE--S------MLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 373 ~~~----~~l~~~~~DvIvse~mg~~L~~e--~------~l~~vl~a~~r~LkpgG~lip 420 (633)
... ..++.++||+|+|+...++.... . ....++..+.++|+|||.++.
T Consensus 104 ~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 104 LVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 200 01345789999997533322111 0 124688999999999999984
No 131
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.98 E-value=5.3e-09 Score=110.18 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=82.6
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG--a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~ 361 (633)
.+.+.|.... .++.+|||+|||||..+..++++. ..+|+|||+|+.|++.|++++....-. -+
T Consensus 52 ~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~-------------~~ 116 (301)
T TIGR03438 52 RHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ-------------LE 116 (301)
T ss_pred HHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC-------------ce
Confidence 3444454432 366899999999999999999885 258999999999999999887653321 45
Q ss_pred EEEEEcccccc-ccccccCCCc---ccEEE-Ee-cccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 362 MEVVQGMVEEL-GESMQIQPHS---VDVLV-SE-WMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 362 I~vi~gd~e~l-~~~~~l~~~~---~DvIv-se-~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
|.++++|+.+. . ++... ..+++ +. .+++ +.......++..+.+.|+|||.++..
T Consensus 117 v~~i~gD~~~~~~----~~~~~~~~~~~~~~~gs~~~~--~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 117 VHGICADFTQPLA----LPPEPAAGRRLGFFPGSTIGN--FTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEEEEcccchhh----hhcccccCCeEEEEecccccC--CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 78899999863 3 33221 22233 21 2222 34556778999999999999999854
No 132
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.6e-09 Score=105.32 Aligned_cols=107 Identities=25% Similarity=0.330 Sum_probs=93.4
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
.|.....+.+|++|||.|.|+|.|+..+|++ |. .+|+..|+-+..++.|+++++..++. ++|++.
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-------------d~v~~~ 151 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-------------DRVTLK 151 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-------------cceEEE
Confidence 3566677899999999999999999999987 43 79999999999999999999999997 779999
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.+|+.+.. .+ +.||.|+... ..+..++..+.+.|+|||.++.
T Consensus 152 ~~Dv~~~~----~~-~~vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 152 LGDVREGI----DE-EDVDAVFLDL--------PDPWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred eccccccc----cc-cccCEEEEcC--------CChHHHHHHHHHHhCCCcEEEE
Confidence 99999876 44 5899999653 3567899999999999999884
No 133
>PRK00811 spermidine synthase; Provisional
Probab=98.97 E-value=3.8e-09 Score=110.27 Aligned_cols=115 Identities=17% Similarity=0.114 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++++||+||||+|.++..+++. +..+|++||+++.+++.|++.+...+.. .....+++++.+|......
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~---------~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG---------AYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc---------cccCCceEEEECchHHHHh
Confidence 35689999999999999999887 6789999999999999999987642210 0012789999999987642
Q ss_pred ccccCCCcccEEEEecccccccChh-hHHHHHHHHhhcccCCcEEEeec
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~-~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
...++||+|++........... ....++..+.+.|+|||+++...
T Consensus 146 ---~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 146 ---ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ---hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 2357899999875332211111 13567888999999999998543
No 134
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.97 E-value=3.9e-09 Score=111.90 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++.+|||+|||+|.+++.+++.|. +|+|+|.++.+++.|+++++.+++ .+++++++|+.++..
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l--------------~~v~~~~~D~~~~~~- 235 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGL--------------TNVQFQALDSTQFAT- 235 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEEcCHHHHHH-
Confidence 4578999999999999999999874 999999999999999999999988 679999999988651
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
...++||+||+++.-.. ....++..+.+ ++|+++++.+
T Consensus 236 --~~~~~~D~Vv~dPPr~G-----~~~~~~~~l~~-~~~~~ivyvs 273 (315)
T PRK03522 236 --AQGEVPDLVLVNPPRRG-----IGKELCDYLSQ-MAPRFILYSS 273 (315)
T ss_pred --hcCCCCeEEEECCCCCC-----ccHHHHHHHHH-cCCCeEEEEE
Confidence 12357999999865222 22333333333 5677666643
No 135
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.96 E-value=7e-09 Score=106.44 Aligned_cols=120 Identities=22% Similarity=0.275 Sum_probs=83.6
Q ss_pred hHHHHHHHHhCCC-CCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 006731 282 TDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (633)
Q Consensus 282 ~~~y~~aI~~~~~-~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~ 359 (633)
++.+.+.+..... ...+.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.++
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------------- 134 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------------- 134 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------------
Confidence 4444444443322 123468999999999999998876 33589999999999999999988654
Q ss_pred CcEEEEEccccccccccccCCCcccEEEEeccccccc------------C------------hhhHHHHHHHHhhcccCC
Q 006731 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL------------Y------------ESMLSSVLFARDQWLKPG 415 (633)
Q Consensus 360 ~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~------------~------------e~~l~~vl~a~~r~Lkpg 415 (633)
++++++|+.+.... .+ .++||+||+++. |.-. + ...+..++....++|+||
T Consensus 135 --~~~~~~D~~~~l~~-~~-~~~fDlVv~NPP-y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~g 209 (251)
T TIGR03704 135 --GTVHEGDLYDALPT-AL-RGRVDILAANAP-YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPG 209 (251)
T ss_pred --CEEEEeechhhcch-hc-CCCEeEEEECCC-CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 36788988764210 01 257999999863 2110 1 112457888888999999
Q ss_pred cEEEee
Q 006731 416 GAILPD 421 (633)
Q Consensus 416 G~lip~ 421 (633)
|.++..
T Consensus 210 G~l~l~ 215 (251)
T TIGR03704 210 GHLLVE 215 (251)
T ss_pred CEEEEE
Confidence 999854
No 136
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.94 E-value=6.3e-09 Score=107.95 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=87.1
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+|++|||+=|-||.+|+.++..||++|++||.|..+++.|+++++.|+++. .+++++++|+.+.-..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~------------~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDL------------DRHRFIQGDVFKFLKR 189 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CC------------TCEEEEES-HHHHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc------------cceEEEecCHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999852 6899999999875322
Q ss_pred cccCCCcccEEEEeccccccc---ChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 376 MQIQPHSVDVLVSEWMGYCLL---YESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~---~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
.. ..++||+||..+..+.-. -+.....++....++|+|||.++.++|+
T Consensus 190 ~~-~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 190 LK-KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp HH-HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred Hh-cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11 246899999986433211 1345667888889999999999977654
No 137
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.92 E-value=5.6e-09 Score=101.10 Aligned_cols=110 Identities=28% Similarity=0.456 Sum_probs=75.5
Q ss_pred CCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 293 PSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDND--FWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ng--l~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
....++++||++|||+|+.++.+++. ++.+|++.|.++ .+..++.+++.|+ .. .++.+...+.
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~-------------~~v~v~~L~W 106 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLD-------------GRVSVRPLDW 106 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------------------EEEE--T
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccc-------------ccccCcEEEe
Confidence 34678999999999999999999999 778999999999 8889999999987 43 7788888776
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.+-.....+...+||+|+..-+ +..+...+.++..+.++|+|+|.++
T Consensus 107 g~~~~~~~~~~~~~D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 107 GDELDSDLLEPHSFDVILASDV---LYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp TS-HHHHHHS-SSBSEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred cCcccccccccccCCEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEE
Confidence 4411011133468999997543 4456788999999999999998855
No 138
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.91 E-value=1.1e-08 Score=108.76 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
++.+|||+|||-|.-..-..+++.++++|+|++...++.|+++.+...-. .. .......-...++.+|........
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~--~~--~~~~~~~f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKR--NN--SKQYRFDFIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTS--TT---HTSEECCEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccc--cc--cccccccchhheeccccccchhhh
Confidence 78999999999999888888899999999999999999999998321100 00 000000134677888776432111
Q ss_pred ccCC--CcccEEEEe-cccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 377 QIQP--HSVDVLVSE-WMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 377 ~l~~--~~~DvIvse-~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.+++ .+||+|-+- .|.|....+.....++..+...|+|||.+|-++
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1333 499999986 588988999999999999999999999999544
No 139
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.91 E-value=5.9e-09 Score=102.17 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=73.2
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
...+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.+ .. .+++++++|+
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--------------~~i~~~~~d~ 81 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--------------ENVDFIRGDF 81 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--------------CCceEEEeeC
Confidence 344578899999999999999988876 34589999999854 12 4578888888
Q ss_pred cccccc----cccCCCcccEEEEeccccc-----ccCh---hhHHHHHHHHhhcccCCcEEEe
Q 006731 370 EELGES----MQIQPHSVDVLVSEWMGYC-----LLYE---SMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 370 e~l~~~----~~l~~~~~DvIvse~mg~~-----L~~e---~~l~~vl~a~~r~LkpgG~lip 420 (633)
.+.... ..++.++||+|++....++ +.+. .+...++..+.++|+|||.++.
T Consensus 82 ~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 82 TDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 763200 0134568999998642111 1111 2346789999999999999985
No 140
>PTZ00146 fibrillarin; Provisional
Probab=98.91 E-value=1.3e-08 Score=105.31 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=80.6
Q ss_pred HHHHHHh---CCCCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 006731 285 YRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (633)
Q Consensus 285 y~~aI~~---~~~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~ 359 (633)
...+|+. ++.+.++.+|||+|||+|.++..+++. | ..+|||||+++.|.+...+.++..
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---------------- 180 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---------------- 180 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----------------
Confidence 4445543 334678899999999999999999987 4 358999999988665555444321
Q ss_pred CcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 360 ~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.+|.++.+|+..... ...+.+.||+|++... .......++.++.++|||||.++.
T Consensus 181 ~NI~~I~~Da~~p~~-y~~~~~~vDvV~~Dva-----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 181 PNIVPIIEDARYPQK-YRMLVPMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred CCCEEEECCccChhh-hhcccCCCCEEEEeCC-----CcchHHHHHHHHHHhccCCCEEEE
Confidence 468888899864210 0123468999998652 123345667788999999999995
No 141
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.89 E-value=2.9e-09 Score=104.55 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHhCC--CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 006731 280 VRTDSYRQAILENP--SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357 (633)
Q Consensus 280 ~R~~~y~~aI~~~~--~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~ 357 (633)
.+++-|.+++.+.. ...+|.+|||...|-|..++.++++||.+|+.||.+++.+..|. .|.++ .+.
T Consensus 115 ~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~----lNPwS--------r~l 182 (287)
T COG2521 115 KGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK----LNPWS--------REL 182 (287)
T ss_pred cCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeec----cCCCC--------ccc
Confidence 45566777776643 34579999999999999999999999999999999999986654 45553 222
Q ss_pred CCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 358 NAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 358 ~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+...|+++.||+.++.+. +++++||+||..+.-+.+.++-.-..+..++.|+|||||.++
T Consensus 183 ~~~~i~iilGD~~e~V~~--~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 183 FEIAIKIILGDAYEVVKD--FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred cccccEEecccHHHHHhc--CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 334699999999998644 778999999998866666665556788999999999999998
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.89 E-value=1e-08 Score=113.34 Aligned_cols=118 Identities=23% Similarity=0.252 Sum_probs=86.2
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
+.+.+.+.......++.+|||+|||+|.+++.+++.+ ++|+|||+++.+++.|+++++.|++ .++
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~--------------~nv 342 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI--------------ANV 342 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC--------------Cce
Confidence 3344444444455667899999999999999999875 5999999999999999999999988 689
Q ss_pred EEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
+++++|+.+..........+||+|+..+.-. ++...++..+.+ ++|+++++.+
T Consensus 343 ~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 343 EFLAGTLETVLPKQPWAGQIPDVLLLDPPRK-----GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEEeCCHHHHHHHHHhcCCCCCEEEECcCCC-----CCCHHHHHHHHh-cCCCEEEEEc
Confidence 9999999874211112235799999876422 222445555443 7888877643
No 143
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.88 E-value=2.1e-08 Score=100.77 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=86.4
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC-CCCCCCCcEEEEEccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSE-GNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~-~~~~~~~~I~vi~gd~e~l~ 373 (633)
..++.+||+.|||.|.-+.++|+.|. +|+|||+|+.+++.+.+ ++++.+.....+ ..-..+..|+++++|+.+++
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH---HcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 34678999999999999999999999 79999999999977644 343321111000 01112367999999999986
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
... -..++||.|+--. ..+.+...+...+...+.++|+|||.++
T Consensus 117 ~~~-~~~~~fD~VyDra-~~~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 117 KIA-NNLPVFDIWYDRG-AYIALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred ccc-cccCCcCeeeeeh-hHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 110 0125899988533 2345678889999999999999999988
No 144
>PLN02476 O-methyltransferase
Probab=98.88 E-value=1.5e-08 Score=104.63 Aligned_cols=110 Identities=22% Similarity=0.207 Sum_probs=88.6
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..+.++|||||+|+|..++.+|++ + ..+|+++|.++..++.|+++++..|+. ++|+++.|++.+.
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-------------~~I~li~GdA~e~ 182 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-------------HKVNVKHGLAAES 182 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-------------CcEEEEEcCHHHH
Confidence 356799999999999999999986 2 347999999999999999999999997 8999999999775
Q ss_pred ccccc--cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 373 GESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 373 ~~~~~--l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
-.... ...++||+|+... .......++....++|+|||+++.+..
T Consensus 183 L~~l~~~~~~~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHhcccCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 32110 1135899999643 234567788888999999999997653
No 145
>PHA03411 putative methyltransferase; Provisional
Probab=98.87 E-value=1.2e-08 Score=104.61 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=58.4
Q ss_pred CCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+.+|||+|||+|.+++.+++. +..+|+|||+++.|++.|+++. .+++++++|+.++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------------------~~v~~v~~D~~e~~-- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------------------PEAEWITSDVFEFE-- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------------------cCCEEEECchhhhc--
Confidence 4569999999999999988775 3459999999999998887642 45789999998875
Q ss_pred cccCCCcccEEEEecc
Q 006731 376 MQIQPHSVDVLVSEWM 391 (633)
Q Consensus 376 ~~l~~~~~DvIvse~m 391 (633)
. ..+||+||+++.
T Consensus 123 --~-~~kFDlIIsNPP 135 (279)
T PHA03411 123 --S-NEKFDVVISNPP 135 (279)
T ss_pred --c-cCCCcEEEEcCC
Confidence 3 468999999863
No 146
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.86 E-value=4.9e-09 Score=102.38 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=80.9
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+|.+|||+-||||.+++.++..||++|+.||.++.+++..+++++.-+.. ++++++.+|+...-..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-------------~~~~v~~~d~~~~l~~ 107 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-------------DKIRVIKGDAFKFLLK 107 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-------------GGEEEEESSHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-------------cceeeeccCHHHHHHh
Confidence 589999999999999999999999999999999999999999999998886 6899999997654321
Q ss_pred cccCCCcccEEEEecccccccChhh-HHHHHHHHh--hcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESM-LSSVLFARD--QWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~-l~~vl~a~~--r~LkpgG~lip~~ 422 (633)
......+||+|+..+. |.. .. ...++..+. .+|+++|+++..+
T Consensus 108 ~~~~~~~fDiIflDPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 108 LAKKGEKFDIIFLDPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHCTS-EEEEEE--S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hcccCCCceEEEECCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 1123589999998863 322 22 355666654 8999999998544
No 147
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.84 E-value=1.7e-08 Score=109.51 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.++.+|||+|||+|.+++.++..+ .+|+|||+++.+++.|+++++.+++ .+++++.+|++++...
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~--------------~~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL--------------DNLSFAALDSAKFATA 296 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEECCHHHHHHh
Confidence 456899999999999999999877 4999999999999999999999987 6799999999875411
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
...+||+||.++.-. +....++..+.+ ++|+++++.+
T Consensus 297 ---~~~~~D~vi~DPPr~-----G~~~~~l~~l~~-~~p~~ivyvs 333 (374)
T TIGR02085 297 ---QMSAPELVLVNPPRR-----GIGKELCDYLSQ-MAPKFILYSS 333 (374)
T ss_pred ---cCCCCCEEEECCCCC-----CCcHHHHHHHHh-cCCCeEEEEE
Confidence 124699999987522 233445555543 6888887754
No 148
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=3.7e-08 Score=99.06 Aligned_cols=126 Identities=25% Similarity=0.412 Sum_probs=90.6
Q ss_pred hHHHHHHHHh---CCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 006731 282 TDSYRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNIN 357 (633)
Q Consensus 282 ~~~y~~aI~~---~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~ 357 (633)
|+.+.+++.. +....++..+||+|||+|.+|+.++.. +...|+|||.|+.++..|.+++.++++.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~----------- 198 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS----------- 198 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-----------
Confidence 4444444433 233456679999999999999988876 5679999999999999999999999998
Q ss_pred CCCcEEEEEccccccc-cccccCCCcccEEEEecccccc------------cChh------------hHHHHHHHHhhcc
Q 006731 358 NAGKMEVVQGMVEELG-ESMQIQPHSVDVLVSEWMGYCL------------LYES------------MLSSVLFARDQWL 412 (633)
Q Consensus 358 ~~~~I~vi~gd~e~l~-~~~~l~~~~~DvIvse~mg~~L------------~~e~------------~l~~vl~a~~r~L 412 (633)
+++.+++-+++.-. ....++.+++|++||++. |.- .||. .+-.++.-+.|.|
T Consensus 199 --g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 199 --GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred --CceEEEecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 99999976555321 111144689999999862 321 1111 1334666778999
Q ss_pred cCCcEEEee
Q 006731 413 KPGGAILPD 421 (633)
Q Consensus 413 kpgG~lip~ 421 (633)
+|||.+...
T Consensus 276 q~gg~~~le 284 (328)
T KOG2904|consen 276 QPGGFEQLE 284 (328)
T ss_pred ccCCeEEEE
Confidence 999998854
No 149
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.83 E-value=1.7e-08 Score=99.46 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=68.4
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc-ccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE-LGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~-l~~ 374 (633)
.++++|||||||+|.++..+++.+...++|||.|+.+++.|++ .+++++++++.+ +..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~---------------------~~~~~~~~d~~~~l~~ 70 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA---------------------RGVNVIQGDLDEGLEA 70 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH---------------------cCCeEEEEEhhhcccc
Confidence 3678999999999999998887654588999999999877753 236778888875 321
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCC
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~Lkpg 415 (633)
++.++||+|++..+ +.+-..+..++.++.|.++++
T Consensus 71 ---~~~~sfD~Vi~~~~---l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 71 ---FPDKSFDYVILSQT---LQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred ---cCCCCcCEEEEhhH---hHcCcCHHHHHHHHHHhCCeE
Confidence 45678999998643 333345667788777766654
No 150
>PLN02366 spermidine synthase
Probab=98.83 E-value=3.8e-08 Score=103.62 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=84.9
Q ss_pred CCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++++||+||||.|.++..+++. +..+|+.||+++.+++.|++.+...+. +...++++++.+|......
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~----------~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV----------GFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc----------ccCCCceEEEEChHHHHHh
Confidence 45789999999999999999998 457999999999999999998754211 1123689999999876532
Q ss_pred ccccCCCcccEEEEecccccccChh-hHHHHHHHHhhcccCCcEEEeecc
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~-~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
. .+.++||+|++........... .-..++..+.+.|+|||+++....
T Consensus 160 ~--~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 160 N--APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred h--ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 1 2346899999865332111111 135688899999999999985543
No 151
>PLN02672 methionine S-methyltransferase
Probab=98.82 E-value=2.3e-08 Score=119.43 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=94.1
Q ss_pred ChhhhHHHHHHHHhCCC-CCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCC--C
Q 006731 278 DKVRTDSYRQAILENPS-LMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS--E 353 (633)
Q Consensus 278 D~~R~~~y~~aI~~~~~-~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~--~ 353 (633)
-+..++.+.+.+...+. .+++++|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|+++++.|++....... .
T Consensus 98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence 33446666666433221 2356799999999999999999874 469999999999999999999988652000000 0
Q ss_pred CCCCCCCcEEEEEccccccccccccC-CCcccEEEEeccccccc------------C---------------------h-
Q 006731 354 GNINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLL------------Y---------------------E- 398 (633)
Q Consensus 354 ~~~~~~~~I~vi~gd~e~l~~~~~l~-~~~~DvIvse~mg~~L~------------~---------------------e- 398 (633)
..+...++|+++++|+.+.. .. ..+||+|||++. |... + +
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~----~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYC----RDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred ccccccccEEEEECchhhhc----cccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 00112257999999997643 11 136999999862 2211 1 1
Q ss_pred --hhHHHHHHHHhhcccCCcEEEeecc
Q 006731 399 --SMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 399 --~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
.....++....++|+|||.++...+
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1135677777889999999986543
No 152
>PRK01581 speE spermidine synthase; Validated
Probab=98.82 E-value=2.9e-08 Score=105.43 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
...++||+||||+|..+..+++.+ ..+|++||+++.+++.|++...-.. .+......++++++.+|..+...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~-------~~~~~~~DpRV~vvi~Da~~fL~ 221 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS-------LNKSAFFDNRVNVHVCDAKEFLS 221 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch-------hccccCCCCceEEEECcHHHHHH
Confidence 456899999999999988888874 5799999999999999996211100 01112234799999999988542
Q ss_pred ccccCCCcccEEEEecccccc--cChhhHHHHHHHHhhcccCCcEEEee
Q 006731 375 SMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L--~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
...++||+|++....... ...-.-..++..+.+.|+|||+++..
T Consensus 222 ---~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 222 ---SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ---hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 234689999987532211 11111256888999999999998854
No 153
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.81 E-value=2.1e-08 Score=102.02 Aligned_cols=112 Identities=24% Similarity=0.242 Sum_probs=83.8
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
.+|.....+.+|.+||+.|.|+|.|+.+++++ | ..+|+..|..+..++.|+++++.+|+. ++|++
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-------------~~v~~ 96 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-------------DNVTV 96 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-------------TTEEE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-------------CCcee
Confidence 34666678899999999999999999999997 3 469999999999999999999999997 89999
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcc-cCCcEEEe
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL-KPGGAILP 420 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~L-kpgG~lip 420 (633)
.++|+.+-.-...+ ...+|.|+..+. .+..++..+.+.| +|||.++.
T Consensus 97 ~~~Dv~~~g~~~~~-~~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 97 HHRDVCEEGFDEEL-ESDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp EES-GGCG--STT--TTSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEEE
T ss_pred Eecceecccccccc-cCcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEEE
Confidence 99999653300011 367999997642 2344667777889 89999873
No 154
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.80 E-value=3e-08 Score=98.47 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=85.6
Q ss_pred CCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
.+.++||+||||+|.-++.+|++ + -.+|+.+|.++..++.|+++++..|+. ++|+++.|+..++-
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-------------~~I~~~~gda~~~l 110 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-------------DRIEVIEGDALEVL 110 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-------------GGEEEEES-HHHHH
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-------------CcEEEEEeccHhhH
Confidence 46789999999999999999987 2 259999999999999999999999997 89999999998753
Q ss_pred cccc--cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 374 ESMQ--IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 374 ~~~~--l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.... .+.++||+|+... .......++....++|+|||+++.+.
T Consensus 111 ~~l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred HHHHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 2110 1135799999643 23445667777889999999999664
No 155
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.79 E-value=2.4e-08 Score=98.53 Aligned_cols=107 Identities=27% Similarity=0.282 Sum_probs=77.6
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
+..|... ..+|.+|||+.||.|.+++.+|+. .+++|+|+|++|.+++.++++++.|++. ++|++
T Consensus 92 r~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-------------~~i~~ 156 (200)
T PF02475_consen 92 RRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-------------NRIEV 156 (200)
T ss_dssp HHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-------------TTEEE
T ss_pred HHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-------------CeEEE
Confidence 3445443 567899999999999999999994 4568999999999999999999999998 89999
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+++|..++. +...+|-|+....... ..++.+..+++++||++-
T Consensus 157 ~~~D~~~~~-----~~~~~drvim~lp~~~-------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 157 INGDAREFL-----PEGKFDRVIMNLPESS-------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EES-GGG--------TT-EEEEEE--TSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred EcCCHHHhc-----CccccCEEEECChHHH-------HHHHHHHHHHhcCCcEEE
Confidence 999999986 3689999997543222 246777788899998763
No 156
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.77 E-value=1.1e-07 Score=92.06 Aligned_cols=121 Identities=26% Similarity=0.397 Sum_probs=91.1
Q ss_pred HHHHHHhCCC--CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 285 YRQAILENPS--LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 285 y~~aI~~~~~--~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
.++++...+. ...|.+|||+-+|+|.+++.|+..||.+|+.||.+..++...+++++.-++. .+.
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-------------~~~ 95 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-------------GEA 95 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-------------cce
Confidence 4444444433 3789999999999999999999999999999999999999999999998877 889
Q ss_pred EEEEccccccccccccCC-CcccEEEEecccccccChhhH--HHHHHH--HhhcccCCcEEEeecce
Q 006731 363 EVVQGMVEELGESMQIQP-HSVDVLVSEWMGYCLLYESML--SSVLFA--RDQWLKPGGAILPDTAT 424 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~-~~~DvIvse~mg~~L~~e~~l--~~vl~a--~~r~LkpgG~lip~~~t 424 (633)
+++..|....... +.. +.||+|+..+. |. .+.+ ...+.. -..+|+|+|.++.....
T Consensus 96 ~~~~~da~~~L~~--~~~~~~FDlVflDPP-y~---~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 96 RVLRNDALRALKQ--LGTREPFDLVFLDPP-YA---KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEEeecHHHHHHh--cCCCCcccEEEeCCC-Cc---cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 9999999854211 221 24999999864 22 2222 222222 46899999999966543
No 157
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.77 E-value=2.8e-08 Score=96.31 Aligned_cols=93 Identities=22% Similarity=0.233 Sum_probs=69.4
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
+.+|.+|||+|||.|.|...+.+....+++|||+++..+..+.+ ..+.++++|+++--
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~---------------------rGv~Viq~Dld~gL- 68 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA---------------------RGVSVIQGDLDEGL- 68 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH---------------------cCCCEEECCHHHhH-
Confidence 46789999999999999888887644489999999987755443 34678999998743
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhccc
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLK 413 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~Lk 413 (633)
..+++++||.||.. ..|..-..+..+|.++.|.-|
T Consensus 69 -~~f~d~sFD~VIls---qtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 69 -ADFPDQSFDYVILS---QTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred -hhCCCCCccEEehH---hHHHhHhHHHHHHHHHHHhcC
Confidence 12788999999953 335444567778887766644
No 158
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.76 E-value=2.5e-09 Score=104.69 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=80.1
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
++.|.+ ....+-+++||+|||||+.+..+-.. +.+.+|||+|.+|++.|.++ |+- + ++.
T Consensus 115 ~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~Y-------------D--~L~ 173 (287)
T COG4976 115 AEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLY-------------D--TLY 173 (287)
T ss_pred HHHHHh-ccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cch-------------H--HHH
Confidence 333433 34444589999999999998877665 56999999999999888763 221 2 234
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
+++...+... ..+++||+|++--+ +.+-+.+..++-....+|+|||.+.++.-+
T Consensus 174 ~Aea~~Fl~~--~~~er~DLi~AaDV---l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 174 VAEAVLFLED--LTQERFDLIVAADV---LPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHHHHHHhhh--ccCCcccchhhhhH---HHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 4444433211 34689999998432 445578889999999999999999987644
No 159
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.76 E-value=3e-08 Score=99.46 Aligned_cols=118 Identities=25% Similarity=0.275 Sum_probs=84.0
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCCCcEEEEEcccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS-EGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~-~~~~~~~~~I~vi~gd~e~l 372 (633)
...++.+||+.|||.|.-..++|+.|. +|+|||+|+.+++.|.+. ++........ .......++|++++||+.++
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEE---NNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHH---CTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHH---hccCCCcccccceeeecCCceEEEEcccccC
Confidence 456778999999999999999999998 999999999999777432 2221000000 00112446899999999998
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
... ..++||+|+=-. ..+-+.+.+.......+.++|+|||.++
T Consensus 110 ~~~---~~g~fD~iyDr~-~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 110 PPE---DVGKFDLIYDRT-FLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp GGS---CHHSEEEEEECS-STTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred Chh---hcCCceEEEEec-ccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 721 125799999533 2345678899999999999999999955
No 160
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.74 E-value=2.5e-08 Score=102.22 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=96.6
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
|.+.++-+.-..++..||++|||-|.-.+..-++|+..++|+|+++..++.|+++.+...-. .....=.+.|
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r--------~~~~~f~a~f 176 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR--------FKKFIFTAVF 176 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhh--------hhcccceeEE
Confidence 44444433345678999999999999999999999999999999999999999987632111 0000024788
Q ss_pred EEccccccc--cccccCCCcccEEEEe-cccccccChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 365 VQGMVEELG--ESMQIQPHSVDVLVSE-WMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 365 i~gd~e~l~--~~~~l~~~~~DvIvse-~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
+.+|..... .....++.+||||-|- .|.|....+.....+|..+.+.|+|||.+|-+.+
T Consensus 177 ~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 177 IAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred EEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 888876532 1111234559999885 5888888888899999999999999999995443
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.74 E-value=6.5e-08 Score=96.35 Aligned_cols=117 Identities=20% Similarity=0.276 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~ 360 (633)
-.|...+.+ ..+.++||+||++.|.-++.+|.+ . ..++++||.++.+++.|++++++.|+. +
T Consensus 48 g~~L~~L~~---~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-------------~ 111 (219)
T COG4122 48 GALLRLLAR---LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-------------D 111 (219)
T ss_pred HHHHHHHHH---hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-------------c
Confidence 345555554 357899999999999999999987 3 358999999999999999999999998 8
Q ss_pred cEEEEE-ccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 361 KMEVVQ-GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 361 ~I~vi~-gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
+|+++. +|..+.-.. ...++||+|+... .....+.++....++|+|||+++.+..
T Consensus 112 ~i~~~~~gdal~~l~~--~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 112 RIELLLGGDALDVLSR--LLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred eEEEEecCcHHHHHHh--ccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 899999 577665422 2358999999532 234567888899999999999997653
No 162
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1e-07 Score=94.31 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=81.9
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCC-----CCCCCCCC---------------
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDND-----FWWDRPQS--------------- 352 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ng-----l~~~~~~~--------------- 352 (633)
..+.++.+|||||.+|.+++.+|+. |++.|.|||+.+..+..|++.++..- ........
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4678899999999999999999998 89999999999999999999775321 00000000
Q ss_pred --------CCCCCCCCcEEEEEccccccccccccCCCcccEEEEe----cccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 353 --------EGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE----WMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 353 --------~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse----~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
....+...+..+...|+-+ +....||+|+|- |+ |.-.+..-+..++..+.++|.|||++|
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~------~~~~~fDiIlcLSiTkWI-HLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLD------MIQPEFDIILCLSITKWI-HLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhh------hccccccEEEEEEeeeeE-ecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 0111222333333333332 234689999984 43 222344568899999999999999999
No 163
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.73 E-value=1.3e-07 Score=98.15 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=82.0
Q ss_pred CCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+++||+||||+|.++..+++.+ ..+|++||+++.+++.|++.+...+. .....+++++.+|......
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~----------~~~~~~v~i~~~D~~~~l~- 140 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG----------SYDDPRVDLQIDDGFKFLA- 140 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc----------cccCCceEEEECchHHHHH-
Confidence 45699999999999998888875 67999999999999999988754221 0112578899888876431
Q ss_pred cccCCCcccEEEEecccccccChh-hHHHHHHHHhhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~-~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
...++||+||+........... ....++..+.+.|+|||+++...
T Consensus 141 --~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 141 --DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred --hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 1247899999875322111111 13577889999999999999653
No 164
>PRK03612 spermidine synthase; Provisional
Probab=98.71 E-value=7e-08 Score=109.07 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=83.4
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
.++++|||||||+|.++..+++.+. .+|++||+++.+++.|+++..-+.+ +......++++++.+|..+...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~-------~~~~~~dprv~vi~~Da~~~l~ 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRAL-------NGGALDDPRVTVVNDDAFNWLR 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhh-------hccccCCCceEEEEChHHHHHH
Confidence 4568999999999999999998854 7999999999999999984221111 0011123689999999987542
Q ss_pred ccccCCCcccEEEEecccccccC--hhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLY--ESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~--e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
...++||+|+++........ .-.-..++..+.+.|||||+++.+..
T Consensus 369 ---~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 369 ---KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred ---hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 22478999999753221100 01124578888999999999996653
No 165
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=3.6e-08 Score=97.69 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=75.9
Q ss_pred EEEEECCCcchHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 300 VVMDIGCGTGILSLFAAQAGA---SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aGa---~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
+||+||||.|.....+.+-.+ -+|+|+|.|+.+++..++....+. .++.....|+..-....
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---------------~~~~afv~Dlt~~~~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---------------SRVEAFVWDLTSPSLKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---------------hhhcccceeccchhccC
Confidence 899999999999999888743 289999999999977776554332 33333333333221111
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
....+.+|+|+.-.+-.. .+.....+++..+.++|||||.++....-
T Consensus 139 ~~~~~svD~it~IFvLSA-i~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 139 PPEEGSVDIITLIFVLSA-IHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred CCCcCccceEEEEEEEec-cChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 144689999997543333 34455688999999999999999976543
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.69 E-value=8.8e-08 Score=100.37 Aligned_cols=90 Identities=27% Similarity=0.344 Sum_probs=74.1
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
..+.|.......++.+|||||||+|.++..+++.+. +|+|+|+++.+++.+++++..++.. +++++
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~-------------~~v~i 89 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLA-------------SKLEV 89 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCC-------------CcEEE
Confidence 444555555677889999999999999999998865 8999999999999999998877654 78999
Q ss_pred EEccccccccccccCCCcccEEEEecccccc
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCL 395 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L 395 (633)
+++|+.+.. + ..+|+||++. .|..
T Consensus 90 i~~Dal~~~----~--~~~d~VvaNl-PY~I 113 (294)
T PTZ00338 90 IEGDALKTE----F--PYFDVCVANV-PYQI 113 (294)
T ss_pred EECCHhhhc----c--cccCEEEecC-Cccc
Confidence 999998876 4 4689999875 3443
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.68 E-value=9.4e-08 Score=98.55 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=69.9
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
+.+.|.......++.+|||||||+|.++..+++.+. +|+|||+++.+++.+++++.. . +++++
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~--------------~~v~i 79 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--A--------------GNVEI 79 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--C--------------CCEEE
Confidence 445555555667889999999999999999999964 899999999999999887753 2 67999
Q ss_pred EEccccccccccccCCCcccEEEEecc
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWM 391 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~m 391 (633)
+++|+.+++ ++ .+|.||+++.
T Consensus 80 i~~D~~~~~----~~--~~d~Vv~NlP 100 (258)
T PRK14896 80 IEGDALKVD----LP--EFNKVVSNLP 100 (258)
T ss_pred EEeccccCC----ch--hceEEEEcCC
Confidence 999998876 54 5899999864
No 168
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=91.72 Aligned_cols=101 Identities=22% Similarity=0.341 Sum_probs=74.4
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccc-ccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE-ELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e-~l~~~ 375 (633)
+..-|||||||||+-+..+...|. ..+|||+|+.|++.|.+.--+ -.++.+|+- -++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-------------------gdlil~DMG~Glp-- 107 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-------------------GDLILCDMGEGLP-- 107 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-------------------cCeeeeecCCCCC--
Confidence 568899999999999999999995 899999999999999863221 134566664 355
Q ss_pred cccCCCcccEEEEe----cccccc---cC-hhhHHHHHHHHhhcccCCcEEEee
Q 006731 376 MQIQPHSVDVLVSE----WMGYCL---LY-ESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 376 ~~l~~~~~DvIvse----~mg~~L---~~-e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++++.||-+||- |+.+.- .. ..-+..++.-++..|++|++.+.+
T Consensus 108 --frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 108 --FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred --CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 889999999984 332211 11 122456777789999999998843
No 169
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.62 E-value=1.5e-07 Score=95.94 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=87.4
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..+.++||+||+++|.-++.+|++ + -.+|+++|.++..++.|+++++..|+. ++|+++.|+..+.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-------------~~I~~~~G~a~e~ 143 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-------------HKIDFREGPALPV 143 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-------------CceEEEeccHHHH
Confidence 356789999999999999999986 2 248999999999999999999999998 9999999999875
Q ss_pred cccccc---CCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 373 GESMQI---QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 373 ~~~~~l---~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
-....- ..++||+|+... .......++..+.++|+|||+++.+..-
T Consensus 144 L~~l~~~~~~~~~fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHHHhccccCCcccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 321100 026899999642 1334566777778999999999976543
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.62 E-value=1.3e-07 Score=98.16 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=66.5
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
+.|.......++.+|||||||+|.++..+++.+. +|+|+|+++.|++.+++++.. .++++++
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----------------~~v~~i~ 93 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----------------DNLTIIE 93 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----------------CceEEEE
Confidence 3444444567889999999999999999999976 999999999999998876531 5799999
Q ss_pred ccccccccccccCCCcccEEEEecc
Q 006731 367 GMVEELGESMQIQPHSVDVLVSEWM 391 (633)
Q Consensus 367 gd~e~l~~~~~l~~~~~DvIvse~m 391 (633)
+|+.+++ ++...++.||+++.
T Consensus 94 ~D~~~~~----~~~~~~~~vv~NlP 114 (272)
T PRK00274 94 GDALKVD----LSELQPLKVVANLP 114 (272)
T ss_pred ChhhcCC----HHHcCcceEEEeCC
Confidence 9999887 43222589998853
No 171
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.62 E-value=5e-08 Score=96.72 Aligned_cols=98 Identities=21% Similarity=0.185 Sum_probs=70.6
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
+.++|||||+|..++.+|.. .++|+|+|.|+.|+++|++.....-.. ...+....++.++. -
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~-------------t~~~ms~~~~v~L~----g 96 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCH-------------TPSTMSSDEMVDLL----G 96 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccccc-------------CCcccccccccccc----C
Confidence 38999999999777777776 679999999999999888754432221 22334444445554 3
Q ss_pred CCCcccEEEEe-cccccccChhhHHHHHHHHhhcccCCc-EEE
Q 006731 379 QPHSVDVLVSE-WMGYCLLYESMLSSVLFARDQWLKPGG-AIL 419 (633)
Q Consensus 379 ~~~~~DvIvse-~mg~~L~~e~~l~~vl~a~~r~LkpgG-~li 419 (633)
+++++|+|++- .+.+| +++.+...+.|+||+.| ++.
T Consensus 97 ~e~SVDlI~~Aqa~HWF-----dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF-----DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred CCcceeeehhhhhHHhh-----chHHHHHHHHHHcCCCCCEEE
Confidence 46899999973 34333 57889999999998776 554
No 172
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.62 E-value=1.4e-07 Score=102.33 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=81.4
Q ss_pred CCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
+.+|||++||+|.+++.+++. ++.+|+++|+++.+++.++++++.|++ .+++++++|+..+.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~--------------~~~~v~~~Da~~~l--- 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL--------------ENEKVFNKDANALL--- 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CceEEEhhhHHHHH---
Confidence 568999999999999999875 667999999999999999999999998 56789999998764
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
...++||+|+.++.| ....++....+.+++||++..+
T Consensus 121 -~~~~~fD~V~lDP~G-------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 121 -HEERKFDVVDIDPFG-------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -hhcCCCCEEEECCCC-------CcHHHHHHHHHHhcCCCEEEEE
Confidence 113679999987642 2345666666678999999977
No 173
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.61 E-value=1.3e-07 Score=95.36 Aligned_cols=51 Identities=29% Similarity=0.342 Sum_probs=41.7
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHH
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV 335 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~ 335 (633)
+..++.......++++|||+|||||.++..+++.|+++|+|||.++.|+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 334444443346889999999999999999999999999999999977643
No 174
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.58 E-value=4e-07 Score=88.65 Aligned_cols=119 Identities=27% Similarity=0.296 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCC-Ce---------EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCC
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA-SR---------VIAVEASEKMAAVATQIAKDNDFWWDRPQSE 353 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa-~~---------V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~ 353 (633)
....+|.......++.+|||--||+|.+.+.++..+. .. ++|+|+++.+++.|+++++..++.
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~------- 87 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE------- 87 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-------
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-------
Confidence 3455666666677889999999999999988887743 23 789999999999999999999987
Q ss_pred CCCCCCCcEEEEEccccccccccccCCCcccEEEEec-ccccccC----hhhHHHHHHHHhhcccCCcEEE
Q 006731 354 GNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEW-MGYCLLY----ESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 354 ~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~-mg~~L~~----e~~l~~vl~a~~r~LkpgG~li 419 (633)
..|.+.++|+.+++ ++.+.+|+||+++ .|.-+.. +.....++..+.+.|++...++
T Consensus 88 ------~~i~~~~~D~~~l~----~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 88 ------DYIDFIQWDARELP----LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp ------GGEEEEE--GGGGG----GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred ------CceEEEecchhhcc----cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 88999999999998 6778999999985 3332222 2334567888899999844444
No 175
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.54 E-value=4.6e-07 Score=95.23 Aligned_cols=117 Identities=26% Similarity=0.357 Sum_probs=96.0
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
+.+++.+.....+|..|||-=||||.+.+.+.-.|+ +|+|+|++..|++-|+.++...++ ....+
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i--------------~~~~~ 249 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI--------------EDYPV 249 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc--------------CceeE
Confidence 445566666788999999999999999999999999 999999999999999999998887 45655
Q ss_pred EEc-cccccccccccCCCcccEEEEec-cccccc-----ChhhHHHHHHHHhhcccCCcEEEe
Q 006731 365 VQG-MVEELGESMQIQPHSVDVLVSEW-MGYCLL-----YESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 365 i~g-d~e~l~~~~~l~~~~~DvIvse~-mg~~L~-----~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+.+ |+..++ ++..++|.|++++ .|-..- -+.++..++....+.|++||.+++
T Consensus 250 ~~~~Da~~lp----l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 250 LKVLDATNLP----LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred EEecccccCC----CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 666 999999 8877899999985 222211 145577889999999999998874
No 176
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.54 E-value=4.2e-07 Score=91.56 Aligned_cols=88 Identities=28% Similarity=0.371 Sum_probs=76.1
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
....+.|.....+.++.+||+||.|||.|+..+..+|+ +|+|+|+++.|++...++++.-... ++.
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~-------------~kL 109 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKS-------------GKL 109 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCcc-------------cee
Confidence 34566677777889999999999999999999999987 9999999999999998888755544 899
Q ss_pred EEEEccccccccccccCCCcccEEEEec
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEW 390 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~ 390 (633)
.+++||....+ +| .||++|++.
T Consensus 110 qV~~gD~lK~d----~P--~fd~cVsNl 131 (315)
T KOG0820|consen 110 QVLHGDFLKTD----LP--RFDGCVSNL 131 (315)
T ss_pred eEEecccccCC----Cc--ccceeeccC
Confidence 99999998877 54 799999974
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.53 E-value=3.7e-07 Score=96.42 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=61.2
Q ss_pred CCCEEEEECCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCcEEEEE-ccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQ-GMVEELG 373 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~-aGa~~V~aVD~S~~~~~~A~~~~~~n-gl~~~~~~~~~~~~~~~~I~vi~-gd~e~l~ 373 (633)
++.+|||||||+|.+...++. ....+++|+|+++.+++.|+++++.| ++. ++|++++ .+..++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-------------~~I~~~~~~~~~~i~ 180 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-------------GAIRLRLQKDSKAIF 180 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-------------CcEEEEEccchhhhh
Confidence 568999999999866555544 33348999999999999999999999 787 8898864 4443332
Q ss_pred cccccCCCcccEEEEecc
Q 006731 374 ESMQIQPHSVDVLVSEWM 391 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~m 391 (633)
.....+.++||+|+|++.
T Consensus 181 ~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 181 KGIIHKNERFDATLCNPP 198 (321)
T ss_pred hcccccCCceEEEEeCCC
Confidence 111123578999999974
No 178
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=5.2e-07 Score=95.49 Aligned_cols=101 Identities=23% Similarity=0.295 Sum_probs=86.0
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
...|.+|||+=||-|.+|+.+|+.|+.+|+|+|++|.++..++++++.|++. +.|+.++||..++.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-------------~~v~~i~gD~rev~- 251 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-------------GRVEPILGDAREVA- 251 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-------------ceeeEEeccHHHhh-
Confidence 3569999999999999999999999877999999999999999999999997 78999999999987
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
...+.+|-|+. ++.. .-..++....+.+++||.+.
T Consensus 252 ---~~~~~aDrIim---~~p~----~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 252 ---PELGVADRIIM---GLPK----SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred ---hccccCCEEEe---CCCC----cchhhHHHHHHHhhcCcEEE
Confidence 32378999994 4432 23456677778888899887
No 179
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.50 E-value=7.6e-07 Score=96.28 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=74.5
Q ss_pred CCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
+.+|||++||+|.+++.+++. +++|+|||.++.+++.|+++++.|++ .+++++.+|+.++.....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~--------------~~v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI--------------DNVQIIRMSAEEFTQAMN 271 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC--------------CcEEEEECCHHHHHHHHh
Confidence 357999999999999988876 56999999999999999999999998 689999999987531110
Q ss_pred c------------CCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 378 I------------QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 378 l------------~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
. ...+||+||..+. +. ++...++..+.+ |+++++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPP-R~----G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPP-RA----GLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred hcccccccccccccCCCCCEEEECCC-CC----CCcHHHHHHHHc---cCCEEEEE
Confidence 0 0125899998875 22 233445554433 56666643
No 180
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.50 E-value=9.8e-07 Score=97.95 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...+|.+|||++||+|.-+..+|.. +...|+|+|+++..++.+++++++.|+ .+|.+...|...
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--------------~nv~v~~~D~~~ 175 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV--------------SNVALTHFDGRV 175 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CeEEEEeCchhh
Confidence 4568899999999999988888876 235899999999999999999999998 678899999887
Q ss_pred cccccccCCCcccEEEEec----ccccccChhh---------------HHHHHHHHhhcccCCcEEEeecceeE
Q 006731 372 LGESMQIQPHSVDVLVSEW----MGYCLLYESM---------------LSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~----mg~~L~~e~~---------------l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
+... + .+.||.|+... .|.+--.+.. -..+|....++|||||+|+-++||+.
T Consensus 176 ~~~~--~-~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 176 FGAA--L-PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hhhh--c-hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 6421 2 36799999653 2222211111 14678888999999999999999963
No 181
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.50 E-value=8.5e-07 Score=95.55 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=74.5
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc-c
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-Q 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~-~ 377 (633)
.+|||+|||+|.+++.+++.. ++|+|||.++.+++.|+++++.|++ .+++++.+|++++.... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~--------------~~v~~~~~d~~~~~~~~~~ 263 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI--------------DNVQIIRMSAEEFTQAMNG 263 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC--------------CcEEEEEcCHHHHHHHHhh
Confidence 479999999999999888764 5999999999999999999999998 57999999998854210 0
Q ss_pred ---c---C-----CCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 378 ---I---Q-----PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 378 ---l---~-----~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
+ . ..++|+|+..+.-. ++...++..+.+ |+++++.+
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred ccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEE
Confidence 0 0 12489999887532 233445555443 67776644
No 182
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=5.7e-07 Score=86.64 Aligned_cols=110 Identities=22% Similarity=0.373 Sum_probs=84.5
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
..+.|..++...+|++|||+|+|+|+-++.++++|++.|++.|+.+...+..+-+++.||.. |.+
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~---------------i~~ 131 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS---------------ILF 131 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce---------------eEE
Confidence 44557778888999999999999999999999999999999999999998888899999864 888
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++.|.-. . +..||+|+..-+ ......-..++.-..++...|-.++
T Consensus 132 ~~~d~~g-~------~~~~Dl~LagDl---fy~~~~a~~l~~~~~~l~~~g~~vl 176 (218)
T COG3897 132 THADLIG-S------PPAFDLLLAGDL---FYNHTEADRLIPWKDRLAEAGAAVL 176 (218)
T ss_pred eeccccC-C------CcceeEEEeece---ecCchHHHHHHHHHHHHHhCCCEEE
Confidence 8887754 3 478999996433 2333444556664444444554444
No 183
>PLN02823 spermine synthase
Probab=98.46 E-value=9.3e-07 Score=94.19 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=81.7
Q ss_pred CCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
..++||.||+|.|.++..+++. +..+|++||+++.+++.|++.+..++- ....++++++.+|......
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~----------~~~dprv~v~~~Da~~~L~- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE----------AFCDKRLELIINDARAELE- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc----------cccCCceEEEEChhHHHHh-
Confidence 4579999999999999988886 567999999999999999988754320 1123789999999988642
Q ss_pred cccCCCcccEEEEeccccc---ccChhhHHHHHH-HHhhcccCCcEEEee
Q 006731 376 MQIQPHSVDVLVSEWMGYC---LLYESMLSSVLF-ARDQWLKPGGAILPD 421 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~---L~~e~~l~~vl~-a~~r~LkpgG~lip~ 421 (633)
...++||+|+....... ....-.-..++. .+.+.|+|||+++..
T Consensus 172 --~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 172 --KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred --hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 23478999998743211 000001235666 788999999998843
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=2.1e-06 Score=81.79 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=80.3
Q ss_pred CCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+.+|+||||+|..+-|+++. +...+.++|+||.+++..++.++.|+. ++.+++.|+..--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---------------~~~~V~tdl~~~l-- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---------------HIDVVRTDLLSGL-- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---------------ccceeehhHHhhh--
Confidence 689999999999999999987 345788999999999888998888874 5889999987654
Q ss_pred cccCCCcccEEEEeccccccc-----------------Chhh--HHHHHHHHhhcccCCcEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLL-----------------YESM--LSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~-----------------~e~~--l~~vl~a~~r~LkpgG~li 419 (633)
..+++|+++-++ .|... ..++ .+.++.++..+|.|.|.++
T Consensus 107 ---~~~~VDvLvfNP-PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 107 ---RNESVDVLVFNP-PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred ---ccCCccEEEECC-CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 348999999875 23221 1222 5678888888999999887
No 185
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.43 E-value=2.6e-06 Score=84.11 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=72.3
Q ss_pred CCCEEEEECCCcc----hHHHHHHHc---CC---CeEEEEeCCHHHHHHHHHHHH-h---CCCC----------CCCCCC
Q 006731 297 KGAVVMDIGCGTG----ILSLFAAQA---GA---SRVIAVEASEKMAAVATQIAK-D---NDFW----------WDRPQS 352 (633)
Q Consensus 297 ~~~~VLDVGcGtG----~lsl~~a~a---Ga---~~V~aVD~S~~~~~~A~~~~~-~---ngl~----------~~~~~~ 352 (633)
+.-+|+.+||+|| .+++.+... .. -+|+|.|+|+.+++.|++-.= . .+++ ......
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4579999999999 567777662 12 289999999999999987221 0 0110 000001
Q ss_pred CCCCCCCCcEEEEEccccccccccccCCCcccEEEEe-cccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 353 EGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE-WMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 353 ~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse-~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
........+|+|.+.++.+.. .+.++||+|+|- .|.|+ .+.....++..+.+.|+|||.++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~----~~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD----PPFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC----cccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 123334568999999998832 345899999994 55553 45567889999999999999999543
No 186
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.42 E-value=1.1e-06 Score=86.65 Aligned_cols=109 Identities=24% Similarity=0.340 Sum_probs=79.1
Q ss_pred CEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
..+||||||.|.+.+.+|+.. -..++|||+....+..|.+.+...++ .++.++++|+..+....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--------------~Nv~~~~~da~~~l~~~- 83 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--------------KNVRFLRGDARELLRRL- 83 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--------------SSEEEEES-CTTHHHHH-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--------------cceEEEEccHHHHHhhc-
Confidence 399999999999998888873 35899999999999999999998888 79999999998843221
Q ss_pred cCCCcccEEEEeccccccc--C-hh--hHHHHHHHHhhcccCCcEEEeec
Q 006731 378 IQPHSVDVLVSEWMGYCLL--Y-ES--MLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~--~-e~--~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++++++|-|.....+-..- + .. .-+.++..+.+.|+|||.+...+
T Consensus 84 ~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 84 FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4558899988642111000 0 00 12568899999999999988544
No 187
>PRK04148 hypothetical protein; Provisional
Probab=98.41 E-value=2.9e-06 Score=78.10 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=61.4
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~-lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
+.+.|..+....++.+|||||||+|. ++..+++.|. .|+|+|+++.+++.|++. .+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~---------------------~~~ 61 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL---------------------GLN 61 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---------------------CCe
Confidence 44456665555567899999999996 9999999997 999999999988766543 357
Q ss_pred EEEccccccccccccCCCcccEEEE
Q 006731 364 VVQGMVEELGESMQIQPHSVDVLVS 388 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~~~~~DvIvs 388 (633)
++.+|+.+-... + -+.+|+|.|
T Consensus 62 ~v~dDlf~p~~~--~-y~~a~liys 83 (134)
T PRK04148 62 AFVDDLFNPNLE--I-YKNAKLIYS 83 (134)
T ss_pred EEECcCCCCCHH--H-HhcCCEEEE
Confidence 889999876521 1 367999998
No 188
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.41 E-value=1.2e-06 Score=89.96 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=66.0
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
.+.|.......++.+|||||||+|.++..+++.+. +|+|+|.++.+++.+++++.. . .+++++
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~-------------~~v~v~ 80 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---Y-------------ERLEVI 80 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---C-------------CcEEEE
Confidence 33445444566789999999999999999999975 799999999999988876642 2 679999
Q ss_pred EccccccccccccCCCccc---EEEEec
Q 006731 366 QGMVEELGESMQIQPHSVD---VLVSEW 390 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~D---vIvse~ 390 (633)
++|+.+++ ++ .+| +|++++
T Consensus 81 ~~D~~~~~----~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 81 EGDALKVD----LP--DFPKQLKVVSNL 102 (253)
T ss_pred ECchhcCC----hh--HcCCcceEEEcC
Confidence 99998877 43 566 888875
No 189
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=4.4e-07 Score=83.15 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=74.1
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
.|-.......|++++|+|||+|.|+..++-.++..|.|+|+.+.+++.+++++....+ ++.++++
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---------------qidlLqc 103 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---------------QIDLLQC 103 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---------------hhheeee
Confidence 3444456689999999999999999888777899999999999999999999887665 3689999
Q ss_pred cccccccccccCCCcccEEEEec-ccccc
Q 006731 368 MVEELGESMQIQPHSVDVLVSEW-MGYCL 395 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~-mg~~L 395 (633)
++.++. +..+.||..|.++ +|.-.
T Consensus 104 dildle----~~~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 104 DILDLE----LKGGIFDTAVINPPFGTKK 128 (185)
T ss_pred eccchh----ccCCeEeeEEecCCCCccc
Confidence 999987 6668999999874 45433
No 190
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.3e-06 Score=94.02 Aligned_cols=121 Identities=25% Similarity=0.268 Sum_probs=91.5
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 006731 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (633)
Q Consensus 279 ~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~ 358 (633)
...++.+...........++.+|||+-||.|.+++.+|+. +++|+|||+++.+++.|+++++.|++
T Consensus 275 ~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i------------- 340 (432)
T COG2265 275 PAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI------------- 340 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC-------------
Confidence 3445556666666666678899999999999999999976 45999999999999999999999999
Q ss_pred CCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 359 ~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
.+++|+.++++++..... ....+|+||..+.-.++ -+.+++.+.+ ++|..+++.|
T Consensus 341 -~N~~f~~~~ae~~~~~~~-~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 341 -DNVEFIAGDAEEFTPAWW-EGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred -CcEEEEeCCHHHHhhhcc-ccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEEEe
Confidence 569999999999873211 12578999988765543 2345555544 4555566543
No 191
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.37 E-value=2.5e-06 Score=92.24 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=84.1
Q ss_pred CCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
+.+|||+.||+|..++.+++. |+++|+++|+++.+++.++++++.|+. .+++++++|+..+...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--------------~~~~v~~~Da~~~l~~ 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV--------------ENIEVPNEDAANVLRY 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC--------------CcEEEEchhHHHHHHH
Confidence 468999999999999999987 789999999999999999999999987 5789999999887521
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
...+||+|...+.| ....+++...+.+++||++..+.
T Consensus 111 ---~~~~fDvIdlDPfG-------s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 111 ---RNRKFHVIDIDPFG-------TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---hCCCCCEEEeCCCC-------CcHHHHHHHHHhcccCCEEEEEe
Confidence 13579999977632 22457788888899999998663
No 192
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.35 E-value=2.5e-06 Score=84.39 Aligned_cols=106 Identities=22% Similarity=0.161 Sum_probs=76.6
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
...++||.|||.|+.+..+.-.-+.+|-.||.++..++.|++.+....- ...++++.-++++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--------------~v~~~~~~gLQ~f~--- 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--------------RVGEFYCVGLQDFT--- 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--------------CEEEEEES-GGG-----
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--------------CcceEEecCHhhcc---
Confidence 3579999999999999866555578999999999999999987654221 56788999999987
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
.+..+||+|++-|.--+ +...++-.+|..+...|+|+|+|+.-
T Consensus 118 -P~~~~YDlIW~QW~lgh-LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 118 -PEEGKYDLIWIQWCLGH-LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ---TT-EEEEEEES-GGG-S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCcEeEEEehHhhcc-CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 33479999999986332 45567889999999999999999854
No 193
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.35 E-value=3.9e-06 Score=81.95 Aligned_cols=96 Identities=30% Similarity=0.408 Sum_probs=78.5
Q ss_pred EEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 300 VVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
+|+|||+|.|.-++.+|=+- ..+|+.||.+..-+...+..++.-++ .+++++++++++ . .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--------------~nv~v~~~R~E~-~----~ 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--------------SNVEVINGRAEE-P----E 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---------------SSEEEEES-HHH-T----T
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--------------CCEEEEEeeecc-c----c
Confidence 89999999998888877763 35899999999999999999999999 789999999999 2 3
Q ss_pred CCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 379 ~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
...+||+|+|-.+ ..+..++.-..++|++||.++.-
T Consensus 112 ~~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 112 YRESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp TTT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEE
Confidence 4589999999765 24567888889999999999843
No 194
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.31 E-value=1.3e-06 Score=83.42 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=62.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHH
Q 006731 324 IAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSS 403 (633)
Q Consensus 324 ~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~ 403 (633)
+|+|+|+.|++.|+++.+..+.. ...+|+++++|+++++ ++.++||+|++. +.+.+-..+..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-----------~~~~i~~~~~d~~~lp----~~~~~fD~v~~~---~~l~~~~d~~~ 62 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-----------CYKCIEWIEGDAIDLP----FDDCEFDAVTMG---YGLRNVVDRLR 62 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-----------CCCceEEEEechhhCC----CCCCCeeEEEec---chhhcCCCHHH
Confidence 48999999999998776532210 0157999999999998 778899999974 33444457889
Q ss_pred HHHHHhhcccCCcEEEee
Q 006731 404 VLFARDQWLKPGGAILPD 421 (633)
Q Consensus 404 vl~a~~r~LkpgG~lip~ 421 (633)
++.++.|+|||||.++..
T Consensus 63 ~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 63 AMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred HHHHHHHHcCcCeEEEEE
Confidence 999999999999999843
No 195
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.27 E-value=8.1e-06 Score=83.11 Aligned_cols=106 Identities=22% Similarity=0.212 Sum_probs=78.6
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
..+.......+.++|||||+|+|.++..++++- .-+++..|. |.+++.+++ . ++|+++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~-------------~rv~~~ 148 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------A-------------DRVEFV 148 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------T-------------TTEEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------c-------------cccccc
Confidence 344444555566899999999999999999883 348999999 667777776 2 899999
Q ss_pred EccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCC--cEEEee
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG--GAILPD 421 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~Lkpg--G~lip~ 421 (633)
.||+. -+ +|. +|+++...+-|. ..+.....+|..+.+.|+|| |+|+..
T Consensus 149 ~gd~f-~~----~P~--~D~~~l~~vLh~-~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 149 PGDFF-DP----LPV--ADVYLLRHVLHD-WSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp ES-TT-TC----CSS--ESEEEEESSGGG-S-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred cccHH-hh----hcc--ccceeeehhhhh-cchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99998 34 554 999997655332 23456778999999999999 998854
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4.2e-06 Score=85.38 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=73.4
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
..+.|.......++..||+||+|.|.|+..+++.++ +|+|||+++.++...++.+. .. +++++
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~-------------~n~~v 80 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PY-------------DNLTV 80 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cc-------------cceEE
Confidence 456677777777899999999999999999999987 79999999999988887765 22 78999
Q ss_pred EEccccccccccccCCC-cccEEEEecccccc
Q 006731 365 VQGMVEELGESMQIQPH-SVDVLVSEWMGYCL 395 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~-~~DvIvse~mg~~L 395 (633)
+++|+-.++ ++.- .++.||++. .|..
T Consensus 81 i~~DaLk~d----~~~l~~~~~vVaNl-PY~I 107 (259)
T COG0030 81 INGDALKFD----FPSLAQPYKVVANL-PYNI 107 (259)
T ss_pred EeCchhcCc----chhhcCCCEEEEcC-CCcc
Confidence 999999988 6522 789999985 3444
No 197
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.25 E-value=1.8e-05 Score=81.14 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=106.1
Q ss_pred hhhhhhhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC---CCeEEEEeCCHHH
Q 006731 256 KKVNESYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG---ASRVIAVEASEKM 332 (633)
Q Consensus 256 ~~~d~~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG---a~~V~aVD~S~~~ 332 (633)
+-.|..|.++-+--++...-..= -+....+|.........-+||||.||.|...+-+.... ...|.-.|.|+..
T Consensus 97 rliDr~yLnaiGWrGIR~Rk~~l---~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~N 173 (311)
T PF12147_consen 97 RLIDRNYLNAIGWRGIRQRKVHL---EELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPIN 173 (311)
T ss_pred HHHHHhhhcccchHHHHHHHHHH---HHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHH
Confidence 45677888877766655432111 12344455444334566899999999998877777652 3689999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccCh-hhHHHHHHHHhhc
Q 006731 333 AAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYE-SMLSSVLFARDQW 411 (633)
Q Consensus 333 ~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e-~~l~~vl~a~~r~ 411 (633)
++..++.++++|+. +.++|.++|+.+......+ ..+.+++|...+ |-|+.. .++...+..+.+.
T Consensus 174 v~~g~~li~~~gL~-------------~i~~f~~~dAfd~~~l~~l-~p~P~l~iVsGL-~ElF~Dn~lv~~sl~gl~~a 238 (311)
T PF12147_consen 174 VEKGRALIAERGLE-------------DIARFEQGDAFDRDSLAAL-DPAPTLAIVSGL-YELFPDNDLVRRSLAGLARA 238 (311)
T ss_pred HHHHHHHHHHcCCc-------------cceEEEecCCCCHhHhhcc-CCCCCEEEEecc-hhhCCcHHHHHHHHHHHHHH
Confidence 99999999999997 7779999999886532223 356788876543 223333 4567788999999
Q ss_pred ccCCcEEEeec
Q 006731 412 LKPGGAILPDT 422 (633)
Q Consensus 412 LkpgG~lip~~ 422 (633)
+.|||.+|-..
T Consensus 239 l~pgG~lIyTg 249 (311)
T PF12147_consen 239 LEPGGYLIYTG 249 (311)
T ss_pred hCCCcEEEEcC
Confidence 99999999543
No 198
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.19 E-value=1.1e-05 Score=87.06 Aligned_cols=97 Identities=28% Similarity=0.396 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
....+.+.......++ .|||+-||+|.+|+.+|+.. ++|+|||.++.+++.|+++++.|++ +++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i--------------~n~ 246 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGI--------------DNV 246 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT----------------SE
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCC--------------Ccc
Confidence 3344444555454455 89999999999999999875 4999999999999999999999999 789
Q ss_pred EEEEcccccccccc------------ccCCCcccEEEEecccccc
Q 006731 363 EVVQGMVEELGESM------------QIQPHSVDVLVSEWMGYCL 395 (633)
Q Consensus 363 ~vi~gd~e~l~~~~------------~l~~~~~DvIvse~mg~~L 395 (633)
+|+.++++++.... .+....+|+||..+.-.++
T Consensus 247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 99999887753210 0122368999988754443
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.19 E-value=1.1e-05 Score=80.05 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..+++++||||.=||.-++..|.+ .-.+|+++|+++..++.+.+..+..|.. .+|++++|...+.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-------------~KI~~i~g~a~es 137 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-------------HKITFIEGPALES 137 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-------------ceeeeeecchhhh
Confidence 467899999999999988888887 2249999999999999999999999998 9999999988763
Q ss_pred cccc--ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 373 GESM--QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 373 ~~~~--~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
-... ..+.+.||.++... +-...........++||+||+|+.+..-++.
T Consensus 138 Ld~l~~~~~~~tfDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHHHHhcCCCCceeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 2111 13457899999532 1223345677778999999999987655554
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.19 E-value=1.4e-05 Score=83.14 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=86.7
Q ss_pred CEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
++||-||-|.|..+..+.+.. ..+++.||+++.+++.|++.+..... +....+++++.+|..++...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~----------~~~dpRv~i~i~Dg~~~v~~-- 145 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSG----------GADDPRVEIIIDDGVEFLRD-- 145 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccc----------ccCCCceEEEeccHHHHHHh--
Confidence 799999999999999999995 57999999999999999998754321 11148999999999887632
Q ss_pred cCCCcccEEEEecccccccChhh-HHHHHHHHhhcccCCcEEEeeccee
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESM-LSSVLFARDQWLKPGGAILPDTATM 425 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~-l~~vl~a~~r~LkpgG~lip~~~t~ 425 (633)
. .++||+|+..........+.. -..++..+.+.|+++|+++-.+.+.
T Consensus 146 ~-~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 146 C-EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred C-CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 2 348999998754332111111 2568999999999999999664443
No 201
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=8.1e-06 Score=89.13 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=91.9
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 006731 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (633)
Q Consensus 279 ~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~ 358 (633)
..-.+.+...|.....+..++.+||+-||||.+++.+|+ |+++|+|||+++.+++.|+.+++.||+
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ngi------------- 430 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGI------------- 430 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCc-------------
Confidence 334455677788888888899999999999999999987 577999999999999999999999999
Q ss_pred CCcEEEEEccccccccccccC-CCccc-EEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 359 AGKMEVVQGMVEELGESMQIQ-PHSVD-VLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 359 ~~~I~vi~gd~e~l~~~~~l~-~~~~D-vIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
.+.+|++|..+++-....-+ ...-+ ++|..+-- .++-..++.+++++-++--. +.-+|+.+.
T Consensus 431 -sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-----~Glh~~~ik~l~~~~~~~rl-vyvSCn~~t 494 (534)
T KOG2187|consen 431 -SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-----KGLHMKVIKALRAYKNPRRL-VYVSCNPHT 494 (534)
T ss_pred -cceeeeecchhhccchhcccCCCCCceEEEECCCc-----ccccHHHHHHHHhccCccce-EEEEcCHHH
Confidence 78999999888865322111 12344 44444422 23345677777776655544 334455443
No 202
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=1.6e-05 Score=93.24 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=86.4
Q ss_pred HHHHHHHHhCCCC-CCCCEEEEECCCcchHHHHHHHcC------------------------------------------
Q 006731 283 DSYRQAILENPSL-MKGAVVMDIGCGTGILSLFAAQAG------------------------------------------ 319 (633)
Q Consensus 283 ~~y~~aI~~~~~~-~~~~~VLDVGcGtG~lsl~~a~aG------------------------------------------ 319 (633)
+.+..+|+..... .++..++|.+||+|.+.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 4456666665444 467899999999999988887631
Q ss_pred -CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecc-cccccC
Q 006731 320 -ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLY 397 (633)
Q Consensus 320 -a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~m-g~~L~~ 397 (633)
..+++|+|+++.+++.|++++..+|+. +.|+++++|+.++... .+.+++|+||+++. |.-+..
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~-------------~~i~~~~~D~~~~~~~--~~~~~~d~IvtNPPYg~r~~~ 319 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVA-------------ELITFEVKDVADLKNP--LPKGPTGLVISNPPYGERLGE 319 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCC-------------cceEEEeCChhhcccc--cccCCCCEEEECCCCcCccCc
Confidence 126999999999999999999999997 8899999999988611 11247999999952 222322
Q ss_pred hhhHHHHHHHHhhccc---CCcEEE
Q 006731 398 ESMLSSVLFARDQWLK---PGGAIL 419 (633)
Q Consensus 398 e~~l~~vl~a~~r~Lk---pgG~li 419 (633)
...+..+.......|+ +|+.+.
T Consensus 320 ~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 320 EPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 3344445444444444 776654
No 203
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.15 E-value=1.4e-05 Score=79.44 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=66.6
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHH-------hCCCCCCCCCCCCCCCCCC
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQ-AGASRVIAVEASEKMAAVATQIAK-------DNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~-aGa~~V~aVD~S~~~~~~A~~~~~-------~ngl~~~~~~~~~~~~~~~ 360 (633)
|.+...+.++.+++|||||.|...+.+|- .++++++|||+.+...+.|+...+ ..|.. ..
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~------------~~ 101 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR------------PG 101 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---------------
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc------------cc
Confidence 33445677899999999999988776664 488889999999998887765443 23332 26
Q ss_pred cEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 361 ~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++++.++|+.+.+... ..-...|+|+++.. .+. ..+..-+..+..-||+|.++|
T Consensus 102 ~v~l~~gdfl~~~~~~-~~~s~AdvVf~Nn~---~F~-~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 102 KVELIHGDFLDPDFVK-DIWSDADVVFVNNT---CFD-PDLNLALAELLLELKPGARII 155 (205)
T ss_dssp EEEEECS-TTTHHHHH-HHGHC-SEEEE--T---TT--HHHHHHHHHHHTTS-TT-EEE
T ss_pred cceeeccCccccHhHh-hhhcCCCEEEEecc---ccC-HHHHHHHHHHHhcCCCCCEEE
Confidence 8899999986643100 00146899998643 333 344555566777889998887
No 204
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.15 E-value=1.6e-05 Score=82.89 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=80.5
Q ss_pred CCEEEEECCCcc----hHHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHHHh----CCCCC-------CC------CC
Q 006731 298 GAVVMDIGCGTG----ILSLFAAQAG-----ASRVIAVEASEKMAAVATQIAKD----NDFWW-------DR------PQ 351 (633)
Q Consensus 298 ~~~VLDVGcGtG----~lsl~~a~aG-----a~~V~aVD~S~~~~~~A~~~~~~----ngl~~-------~~------~~ 351 (633)
.-+|+..||+|| .+++.+...+ .-+|+|+|+|+.+++.|++-+-. .+++. .. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999 5677776642 13799999999999999874210 01100 00 00
Q ss_pred CCCCCCCCCcEEEEEccccccccccccC-CCcccEEEEe-cccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 352 SEGNINNAGKMEVVQGMVEELGESMQIQ-PHSVDVLVSE-WMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 352 ~~~~~~~~~~I~vi~gd~e~l~~~~~l~-~~~~DvIvse-~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
..........|+|.+.++.+.+ .+ .++||+|+|. .+.|+ .......++..+.+.|+|||.++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~----~~~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ----WAVPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC----CccCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0112234577889999987643 32 4789999995 34343 44567889999999999999988544
No 205
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.15 E-value=6.4e-06 Score=78.54 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=58.0
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
.+|+|+.||.|.-++.+|+.+. +|+|||+++..++.|+.+++-.|.. ++|+++++|..++......
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~-------------~~I~~i~gD~~~~~~~~~~ 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVA-------------DNIDFICGDFFELLKRLKS 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-G-------------GGEEEEES-HHHHGGGB--
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCC-------------CcEEEEeCCHHHHHhhccc
Confidence 4799999999999999999965 9999999999999999999999987 8999999999987532111
Q ss_pred CCCcccEEEEec
Q 006731 379 QPHSVDVLVSEW 390 (633)
Q Consensus 379 ~~~~~DvIvse~ 390 (633)
. ..+|+|+..+
T Consensus 67 ~-~~~D~vFlSP 77 (163)
T PF09445_consen 67 N-KIFDVVFLSP 77 (163)
T ss_dssp -----SEEEE--
T ss_pred c-ccccEEEECC
Confidence 1 1289999763
No 206
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.14 E-value=1.8e-05 Score=80.24 Aligned_cols=96 Identities=23% Similarity=0.239 Sum_probs=70.9
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+..++||||+|.|..+..++.. .++|+|.|+|+.|. .++++.|+ +++ +..++.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr----~rL~~kg~-----------------~vl--~~~~w~-- 146 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMR----WRLSKKGF-----------------TVL--DIDDWQ-- 146 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHH----HHHHhCCC-----------------eEE--ehhhhh--
Confidence 35678999999999999999876 45899999999886 44445555 333 222233
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
-.+.+||+|.|-.+ |..-..+.++|..+++.|+|+|++|...
T Consensus 147 --~~~~~fDvIscLNv---LDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 147 --QTDFKFDVISCLNV---LDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred --ccCCceEEEeehhh---hhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 22468999998432 4444668899999999999999998543
No 207
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.14 E-value=2.4e-05 Score=83.62 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCC----------------------------------------e
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGAS----------------------------------------R 322 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~----------------------------------------~ 322 (633)
+....+|.....-.++..++|-=||+|.+.+.+|..++. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 345667777767777789999999999999999887631 3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecc-cccccChhhH
Q 006731 323 VIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM-GYCLLYESML 401 (633)
Q Consensus 323 V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~m-g~~L~~e~~l 401 (633)
++|+|+++.+++.|+.+++..|+. +.|+|.++|+..+. -+.+.+|+|||++. |--+..+.+.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~-------------d~I~f~~~d~~~l~----~~~~~~gvvI~NPPYGeRlg~~~~v 319 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVG-------------DLIEFKQADATDLK----EPLEEYGVVISNPPYGERLGSEALV 319 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCC-------------ceEEEEEcchhhCC----CCCCcCCEEEeCCCcchhcCChhhH
Confidence 789999999999999999999998 99999999999998 33378999999963 2223333333
Q ss_pred ----HHHHHHHhhcccCCcEEEeecce
Q 006731 402 ----SSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 402 ----~~vl~a~~r~LkpgG~lip~~~t 424 (633)
..+...+.+.++.-+..++++..
T Consensus 320 ~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 320 AKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 34455555666666777765543
No 208
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=81.03 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=82.8
Q ss_pred CEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
..+||||||.|.+...+|+... ..++|||+....+..|.+.+.+.++ .++.++++|+.++....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--------------~Nlri~~~DA~~~l~~~- 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL--------------KNLRLLCGDAVEVLDYL- 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC--------------CcEEEEcCCHHHHHHhc-
Confidence 6999999999998888888754 6899999999999999999999888 58999999999876432
Q ss_pred cCCCcccEEEEecccccccChhh--------HHHHHHHHhhcccCCcEEEeec
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESM--------LSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~--------l~~vl~a~~r~LkpgG~lip~~ 422 (633)
.+++++|-|.....+ .+... -+.++....+.|+|||.+...+
T Consensus 115 ~~~~sl~~I~i~FPD---PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 115 IPDGSLDKIYINFPD---PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCeeEEEEECCC---CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 234489988854211 11111 2568899999999999998544
No 209
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.07 E-value=4.1e-05 Score=72.22 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=82.7
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa--~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
+.+........|.-||++|.|||.++..+.+.|. ..++++|.|+..+....+.. +.+.+
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------------------p~~~i 98 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------------------PGVNI 98 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------------------CCccc
Confidence 3444445567788999999999999999999985 58999999999886665543 45678
Q ss_pred EEccccccccc-cccCCCcccEEEEec-ccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 365 VQGMVEELGES-MQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 365 i~gd~e~l~~~-~~l~~~~~DvIvse~-mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+.||..++... ....+..||.|||-. |-.+ .-...-.++......|.+||.++-
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999887621 123467899999963 2211 122234677888888899999883
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=2.2e-05 Score=78.18 Aligned_cols=96 Identities=30% Similarity=0.401 Sum_probs=79.5
Q ss_pred CCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
+++|+|||+|.|.-++.+|=. ...+|+-+|....-+...+...++-++ ++++++++++|++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--------------~nv~i~~~RaE~~~~-- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--------------ENVEIVHGRAEEFGQ-- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--------------CCeEEehhhHhhccc--
Confidence 689999999999888887744 223699999999999999999999999 789999999999872
Q ss_pred ccCCCc-ccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 377 QIQPHS-VDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 377 ~l~~~~-~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..+ ||+|+|-.+ ..+..+..-...++|+||.++
T Consensus 132 ---~~~~~D~vtsRAv-------a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 132 ---EKKQYDVVTSRAV-------ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ---ccccCcEEEeehc-------cchHHHHHHHHHhcccCCcch
Confidence 233 999999765 345667777889999998876
No 211
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.06 E-value=8.5e-06 Score=79.96 Aligned_cols=94 Identities=24% Similarity=0.322 Sum_probs=58.2
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
+.+.+.|.. ..++.+|-|+|||.+.|+..+. .+. +|...|.-.. | +.
T Consensus 61 d~iI~~l~~---~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva~-----------n----------------~~- 107 (219)
T PF05148_consen 61 DVIIEWLKK---RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP-----------N----------------PR- 107 (219)
T ss_dssp HHHHHHHCT---S-TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------S----------------TT-
T ss_pred HHHHHHHHh---cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccCC-----------C----------------CC-
Confidence 445555543 3456799999999999985432 223 7999998531 1 33
Q ss_pred EEEEccccccccccccCCCcccEEEEe--cccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSE--WMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse--~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
|+.+|+..+| ++++.+|++|.- +||. .+..++.+..|.|||||.+.+
T Consensus 108 -Vtacdia~vP----L~~~svDv~VfcLSLMGT------n~~~fi~EA~RvLK~~G~L~I 156 (219)
T PF05148_consen 108 -VTACDIANVP----LEDESVDVAVFCLSLMGT------NWPDFIREANRVLKPGGILKI 156 (219)
T ss_dssp -EEES-TTS-S------TT-EEEEEEES---SS-------HHHHHHHHHHHEEEEEEEEE
T ss_pred -EEEecCccCc----CCCCceeEEEEEhhhhCC------CcHHHHHHHHheeccCcEEEE
Confidence 5679999999 899999999974 3543 568899999999999999983
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.05 E-value=1e-05 Score=82.86 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=81.3
Q ss_pred CCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
+.++||-||-|.|.++..+.+.. .++|++||+++.+++.|++.+...... ...++++++.+|....-..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~----------~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG----------LDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT----------GGSTTEEEEESTHHHHHHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc----------cCCCceEEEEhhhHHHHHh
Confidence 67999999999999999999885 579999999999999999987642210 1227899999999876532
Q ss_pred cccCCC-cccEEEEecccccccChh-hHHHHHHHHhhcccCCcEEEee
Q 006731 376 MQIQPH-SVDVLVSEWMGYCLLYES-MLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 376 ~~l~~~-~~DvIvse~mg~~L~~e~-~l~~vl~a~~r~LkpgG~lip~ 421 (633)
. .+ +||+|+.....-...... .-..++..+.+.|+|||+++..
T Consensus 146 --~-~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 146 --T-QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp --S-SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred --c-cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 2 24 899999875432111111 1357889999999999999854
No 213
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.03 E-value=5.3e-05 Score=78.04 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=85.0
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCC-------------C-----------
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRP-------------Q----------- 351 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~-------------~----------- 351 (633)
..+.+||.-|||.|+|+..+|+.|. .|.|.|.|-.|+ .|...+- |+...... .
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml-l~s~fiL-n~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML-LASNFIL-NHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH-HHHHHHH-cccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3457999999999999999999999 899999999998 6655543 22110000 0
Q ss_pred --CCC--CCCCCCcEEEEEccccccccccccCC---CcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 352 --SEG--NINNAGKMEVVQGMVEELGESMQIQP---HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 352 --~~~--~~~~~~~I~vi~gd~e~l~~~~~l~~---~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
-.+ ......++....||..++- .+. ++||+|++. +|+.....+-..+..+.++|||||.-|
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y----~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVY----GPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEec----CCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 001 1234578888999998876 333 699999974 667777778899999999999999766
No 214
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.01 E-value=5.6e-05 Score=75.15 Aligned_cols=97 Identities=24% Similarity=0.270 Sum_probs=70.7
Q ss_pred EEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccC
Q 006731 301 VMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (633)
Q Consensus 301 VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~ 379 (633)
|.||||--|.|++++++.|. .+|+|+|+++.-++.|+++++.+++. ++|++..||-.+.- -+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-------------~~i~~rlgdGL~~l----~~ 63 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-------------DRIEVRLGDGLEVL----KP 63 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-------------TTEEEEE-SGGGG------G
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-------------ccEEEEECCccccc----CC
Confidence 78999999999999999985 68999999999999999999999998 99999999965532 23
Q ss_pred CCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 380 PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 380 ~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.+.+|+||.-.||-. ....+|.+....++....+|
T Consensus 64 ~e~~d~ivIAGMGG~-----lI~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 64 GEDVDTIVIAGMGGE-----LIIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp GG---EEEEEEE-HH-----HHHHHHHHTGGGGTT--EEE
T ss_pred CCCCCEEEEecCCHH-----HHHHHHHhhHHHhccCCeEE
Confidence 334899998777653 35667777666665544555
No 215
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.6e-05 Score=77.65 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=79.4
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-CCC--eEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-GAS--RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-Ga~--~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
+.+|...||||.|||.|+..+++. |+. .+.|||.-+..++.+++++...-- ..+........++.++.||...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~----~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDIT----TSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhcc----CchhhhhhccCceEEEeCCccc
Confidence 679999999999999999999876 542 349999999999999998875321 0111344455788999999988
Q ss_pred cccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.. -+..+||.|.+- .. .+.+..++...|+|||.++
T Consensus 156 g~----~e~a~YDaIhvG---Aa------a~~~pq~l~dqL~~gGrll 190 (237)
T KOG1661|consen 156 GY----AEQAPYDAIHVG---AA------ASELPQELLDQLKPGGRLL 190 (237)
T ss_pred cC----CccCCcceEEEc---cC------ccccHHHHHHhhccCCeEE
Confidence 76 456899999863 21 1334455556788888776
No 216
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.98 E-value=4e-05 Score=79.03 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=81.7
Q ss_pred CCCEEEEECCCcc----hHHHHHHHcC------CCeEEEEeCCHHHHHHHHHHHHh-----CCCCCCC---------C-C
Q 006731 297 KGAVVMDIGCGTG----ILSLFAAQAG------ASRVIAVEASEKMAAVATQIAKD-----NDFWWDR---------P-Q 351 (633)
Q Consensus 297 ~~~~VLDVGcGtG----~lsl~~a~aG------a~~V~aVD~S~~~~~~A~~~~~~-----ngl~~~~---------~-~ 351 (633)
..-+|+-+||+|| .+++.+.+.+ .-+|+|.|++..+++.|+.-+-. .+++... . .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4679999999999 5677777764 24899999999999988763321 1221000 0 0
Q ss_pred CCCCCCCCCcEEEEEccccccccccccCCCcccEEEE-ecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 352 SEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVS-EWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 352 ~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvs-e~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
....+.....|.|-+.++..-. ...+.||+|+| +.|.|+ .+..-..++......|+|||.++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~----~~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS----PFLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc----cccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0123334566778887776544 23478999999 566664 4556678999999999999999843
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=97.95 E-value=7.3e-05 Score=76.93 Aligned_cols=106 Identities=11% Similarity=0.020 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
...++||-||.|-|..+..+.|... +|+-||+++.+++.+++.+.... ......+++++.. +.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~----------~~~~DpRv~l~~~-~~~---- 134 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFH----------EVKNNKNFTHAKQ-LLD---- 134 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHH----------HhhcCCCEEEeeh-hhh----
Confidence 4569999999999999999999964 99999999999999999654311 1233478888862 211
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
...++||+||.... + .+.+...+.+.|+|||+++-+..+.+.
T Consensus 135 --~~~~~fDVIIvDs~-----~---~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 135 --LDIKKYDLIICLQE-----P---DIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred --ccCCcCCEEEEcCC-----C---ChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 12368999997632 1 256778889999999999977665543
No 218
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.95 E-value=7.9e-06 Score=80.39 Aligned_cols=100 Identities=24% Similarity=0.378 Sum_probs=82.3
Q ss_pred CCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
...++|||||.|.++..+...|..+++-+|.|-.|++.++. ...+++ .+....+|-+.++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i---------------~~~~~v~DEE~Ld---- 132 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSI---------------ETSYFVGDEEFLD---- 132 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCce---------------EEEEEecchhccc----
Confidence 35899999999999999999999999999999999977764 233443 3566778888888
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+...++|+|++.. .+.+...++..+..+...|||+|.+|-
T Consensus 133 f~ens~DLiisSl---slHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 133 FKENSVDLIISSL---SLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred ccccchhhhhhhh---hhhhhccCchHHHHHHHhcCCCccchh
Confidence 8889999999864 256667788888889999999999884
No 219
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.95 E-value=4.1e-05 Score=75.38 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=74.3
Q ss_pred EEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc--
Q 006731 300 VVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-- 376 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~-- 376 (633)
+||+||||||..+.++|++-. -.-.-.|..+......+..+...++. +...-+..|+..-....
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-------------Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-------------NVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-------------ccCCCeEeecCCCCCcccc
Confidence 699999999999998888732 35667888888765666666666664 22333444554432110
Q ss_pred --ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 377 --QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 377 --~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.+..+.||.|++-.|-|...++ ....++....++|+|||.++.
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHISPWS-AVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ccccCCCCcceeeehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEE
Confidence 0124689999997776655443 567888999999999999983
No 220
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.92 E-value=3.6e-05 Score=80.53 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=66.5
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG--a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
+...+...++.+++|.+||.|..+..+++.. ..+|+|+|.++.|++.|++.+.. . +++++++
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~-------------~ri~~i~ 74 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---F-------------GRFTLVH 74 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---C-------------CcEEEEe
Confidence 3344445678899999999999999999984 36999999999999999988754 2 7899999
Q ss_pred ccccccccccccCCCcccEEEEe
Q 006731 367 GMVEELGESMQIQPHSVDVLVSE 389 (633)
Q Consensus 367 gd~e~l~~~~~l~~~~~DvIvse 389 (633)
++..++.....-...+||.|+..
T Consensus 75 ~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 75 GNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCHHHHHHHHHcCCCccCEEEEC
Confidence 99998753211111279999975
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00015 Score=78.33 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=90.1
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHcCC---CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGA---SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~aGa---~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
.+...+|.+|||+.++.|.=+..+|++.. ..|+|+|.++.-++..+.++++-|+ .++.+++.|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~--------------~nv~~~~~d 216 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV--------------RNVIVVNKD 216 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC--------------CceEEEecc
Confidence 34568899999999999998888888742 3579999999999999999999998 558888888
Q ss_pred ccccccccccCCCcccEEEEecc--ccccc----------Chh-------hHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 369 VEELGESMQIQPHSVDVLVSEWM--GYCLL----------YES-------MLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~m--g~~L~----------~e~-------~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
...+.... ...++||.|+.... |.+.. ... .-.++|.+..++|||||.++-++|++..
T Consensus 217 ~~~~~~~~-~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 217 ARRLAELL-PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cccccccc-cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 76554211 11236999997532 22211 011 1246889999999999999999999854
No 222
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.89 E-value=4.1e-05 Score=76.81 Aligned_cols=92 Identities=25% Similarity=0.365 Sum_probs=68.0
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
+.+.+.|... ....+|-|+|||-+.++. .-..+|+..|+-+ -+-
T Consensus 169 d~ii~~ik~r---~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a-----------------------------~~~ 212 (325)
T KOG3045|consen 169 DVIIRKIKRR---PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA-----------------------------VNE 212 (325)
T ss_pred HHHHHHHHhC---cCceEEEecccchhhhhh----ccccceeeeeeec-----------------------------CCC
Confidence 3455555443 456899999999988765 2123788888742 223
Q ss_pred EEEEccccccccccccCCCcccEEEEe--cccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSE--WMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse--~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.++.+|+.+++ ++++++||+|.- +||. .+..++.++.|+|+|||.+..
T Consensus 213 ~V~~cDm~~vP----l~d~svDvaV~CLSLMgt------n~~df~kEa~RiLk~gG~l~I 262 (325)
T KOG3045|consen 213 RVIACDMRNVP----LEDESVDVAVFCLSLMGT------NLADFIKEANRILKPGGLLYI 262 (325)
T ss_pred ceeeccccCCc----CccCcccEEEeeHhhhcc------cHHHHHHHHHHHhccCceEEE
Confidence 45789999999 899999999963 3443 467899999999999999873
No 223
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.6e-05 Score=75.50 Aligned_cols=110 Identities=25% Similarity=0.236 Sum_probs=78.7
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
...++....-..+|+++||||+.||.++..+.+.||++|||||..-..+. -.++.+ . ..+.+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kLR~d-~--------------rV~~~ 128 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKLRND-P--------------RVIVL 128 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhHhcC-C--------------cEEEE
Confidence 44556555556789999999999999999999999999999999876542 122211 1 33444
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
...+++.+... ++. +..|++++..- | -.+..+|.++..+++|+|.+++
T Consensus 129 E~tN~r~l~~~-~~~-~~~d~~v~DvS--F----ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 129 ERTNVRYLTPE-DFT-EKPDLIVIDVS--F----ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred ecCChhhCCHH-Hcc-cCCCeEEEEee--h----hhHHHHHHHHHHhcCCCceEEE
Confidence 55677766522 132 48999998642 1 1467889999999999998873
No 224
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.88 E-value=4.2e-05 Score=79.08 Aligned_cols=86 Identities=26% Similarity=0.353 Sum_probs=67.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
...+.|.......++..|||||+|+|.++..+++.+ ++|++||.++.+++..++....+ .+++
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~----------------~~~~ 79 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN----------------PNVE 79 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC----------------SSEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc----------------ccce
Confidence 344555555556689999999999999999999998 69999999999998888766521 7899
Q ss_pred EEEccccccccccccCC---CcccEEEEec
Q 006731 364 VVQGMVEELGESMQIQP---HSVDVLVSEW 390 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~~---~~~DvIvse~ 390 (633)
++++|+..+. .+. .....||++.
T Consensus 80 vi~~D~l~~~----~~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 80 VINGDFLKWD----LYDLLKNQPLLVVGNL 105 (262)
T ss_dssp EEES-TTTSC----GGGHCSSSEEEEEEEE
T ss_pred eeecchhccc----cHHhhcCCceEEEEEe
Confidence 9999999987 432 4667888764
No 225
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.86 E-value=6e-05 Score=85.05 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=83.3
Q ss_pred CCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+..+||||||.|-+...+|+... ..++|||+....+..|.+.+...++ .++.++.++++.+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--------------~N~~~~~~~~~~~~~~ 412 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI--------------TNFLLFPNNLDLILND 412 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC--------------CeEEEEcCCHHHHHHh
Confidence 468999999999999888888844 5899999999988888888888888 7899999988765422
Q ss_pred cccCCCcccEEEEecccccc--cChh---hHHHHHHHHhhcccCCcEEEeec
Q 006731 376 MQIQPHSVDVLVSEWMGYCL--LYES---MLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L--~~e~---~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++.+++|.|.....+-.. -|.. .-+.++....++|+|||.+...+
T Consensus 413 --~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 413 --LPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred --cCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 667889999864221110 0000 12568899999999999998543
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.85 E-value=1.9e-05 Score=76.81 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=60.4
Q ss_pred CCCEEEEECCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aG--a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
++.+|||+||++|.++..+++.+ +.+|+|||..+. ... ..+..+++|+.+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~--------------~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL--------------QNVSFIQGDITNPEN 77 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---------------TTEEBTTGGGEEEEH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc--------------cceeeeecccchhhH
Confidence 45899999999999999999998 679999999886 111 345556666554321
Q ss_pred cc---c-cC--CCcccEEEEeccccccc--------ChhhHHHHHHHHhhcccCCcEEE
Q 006731 375 SM---Q-IQ--PHSVDVLVSEWMGYCLL--------YESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 375 ~~---~-l~--~~~~DvIvse~mg~~L~--------~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.. . ++ .+++|+|+|........ ........+.....+|+|||.++
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 00 0 11 26899999975211111 11122334445567899999877
No 227
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00014 Score=73.57 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=75.6
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
...|...+...+|.+||+-|.|+|.+|.+++++ | -.+++..|.....+..|++-++..++. ++++
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-------------~~vt 160 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-------------DNVT 160 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-------------cceE
Confidence 445666778899999999999999999999998 3 369999999999999999999999998 9999
Q ss_pred EEEccccccccccccC--CCcccEEEEec
Q 006731 364 VVQGMVEELGESMQIQ--PHSVDVLVSEW 390 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~--~~~~DvIvse~ 390 (633)
+++-|+.... +. ...+|.|+..+
T Consensus 161 ~~hrDVc~~G----F~~ks~~aDaVFLDl 185 (314)
T KOG2915|consen 161 VTHRDVCGSG----FLIKSLKADAVFLDL 185 (314)
T ss_pred EEEeecccCC----ccccccccceEEEcC
Confidence 9999997655 33 46899998653
No 228
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.81 E-value=5.4e-05 Score=70.29 Aligned_cols=59 Identities=31% Similarity=0.424 Sum_probs=51.8
Q ss_pred EEEEECCCcchHHHHHHHcCCC-eEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 300 VVMDIGCGTGILSLFAAQAGAS-RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aGa~-~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
+|||||||.|.+++.+++.+.+ +|+++|.++.+++.++++++.|++ .++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~--------------~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL--------------PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC--------------CcEEEEEeeeeCC
Confidence 5899999999999999998764 899999999999999999999988 4588888776643
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.81 E-value=0.00044 Score=68.76 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=79.4
Q ss_pred HHHHHHh---CCCCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 006731 285 YRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNA 359 (633)
Q Consensus 285 y~~aI~~---~~~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~ 359 (633)
...+|.. +..+.+|.+||-+|+.+|.....++.- | -..|||||.|+...+..-..++..
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---------------- 121 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---------------- 121 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------------
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------------
Confidence 4455654 345778999999999999988888876 5 468999999997765555555443
Q ss_pred CcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 360 ~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
.||-.|-+|+..-.....+ .+.+|+|++..- .......++.++..+||+||.++..
T Consensus 122 ~NIiPIl~DAr~P~~Y~~l-v~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 122 PNIIPILEDARHPEKYRML-VEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTEEEEES-TTSGGGGTTT-S--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeeeeccCCChHHhhcc-cccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 6788888898865543333 469999998642 3355677888889999999998843
No 230
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.80 E-value=6.4e-05 Score=79.31 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=67.7
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
..+|++||||||++|.++..+++.|+ +|+|||..+.. .. +..+ ++|+.+.++.....
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~----~~-L~~~----------------~~V~h~~~d~fr~~- 265 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA----QS-LMDT----------------GQVEHLRADGFKFR- 265 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC----Hh-hhCC----------------CCEEEEeccCcccC-
Confidence 46899999999999999999999999 99999966522 12 2222 67898988887765
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCC
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~Lkpg 415 (633)
-+.+.+|++||... ..+..+..-+.+||..|
T Consensus 266 ---p~~~~vDwvVcDmv-------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 266 ---PPRKNVDWLVCDMV-------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---CCCCCCCEEEEecc-------cCHHHHHHHHHHHHhcC
Confidence 22578999999764 23556777788898776
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.78 E-value=0.00026 Score=66.15 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=61.2
Q ss_pred CCCCCEEEEECCCcchHHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCCcEEEEEc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQ-----AGASRVIAVEASEKMAAVATQIAKDND--FWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~-----aGa~~V~aVD~S~~~~~~A~~~~~~ng--l~~~~~~~~~~~~~~~~I~vi~g 367 (633)
..+...|+|+|||.|.|++.++. ....+|+|||.++..++.|.++.+..+ +. .++.++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~ 89 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLE-------------KRLSFIQG 89 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhh-------------ccchhhcc
Confidence 35678999999999999999999 433499999999999999999988766 43 67788888
Q ss_pred cccccccccccCCCcccEEEE
Q 006731 368 MVEELGESMQIQPHSVDVLVS 388 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvs 388 (633)
++.+.. .....+++|.
T Consensus 90 ~~~~~~-----~~~~~~~~vg 105 (141)
T PF13679_consen 90 DIADES-----SSDPPDILVG 105 (141)
T ss_pred chhhhc-----ccCCCeEEEE
Confidence 776654 2467788886
No 232
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.77 E-value=0.00024 Score=69.65 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+|.+||.||-|-|+..-++.++...+=+.||..|..++..+ .+|+. ..++|.++.|..++....
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr----~~gw~-----------ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR----DWGWR-----------EKENVIILEGRWEDVLNT 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH----hcccc-----------cccceEEEecchHhhhcc
Confidence 689999999999999999999987777788999999885444 45553 237899999999987533
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++++.||-|+-... .-++| ++..+.+.+.|+|||+|++-
T Consensus 165 --L~d~~FDGI~yDTy--~e~yE-dl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 165 --LPDKHFDGIYYDTY--SELYE-DLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred --ccccCcceeEeech--hhHHH-HHHHHHHHHhhhcCCCceEE
Confidence 67788999996442 23333 56677888899999999875
No 233
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.73 E-value=2.6e-05 Score=85.42 Aligned_cols=120 Identities=18% Similarity=0.346 Sum_probs=74.7
Q ss_pred hhHHHHHHHHhCCCC--CCC--CEEEEECCCcchHHHHHHHcCCCeEEEE---eCCHHHHHHHHHHHHhCCCCCCCCCCC
Q 006731 281 RTDSYRQAILENPSL--MKG--AVVMDIGCGTGILSLFAAQAGASRVIAV---EASEKMAAVATQIAKDNDFWWDRPQSE 353 (633)
Q Consensus 281 R~~~y~~aI~~~~~~--~~~--~~VLDVGcGtG~lsl~~a~aGa~~V~aV---D~S~~~~~~A~~~~~~ngl~~~~~~~~ 353 (633)
....|.+.|.+.+.. ..| .++||||||+|.++.++...+.. +..+ |..+..++.| .+.|+.
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfa----leRGvp------- 164 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFA----LERGVP------- 164 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhh----hhcCcc-------
Confidence 345677777776554 223 47999999999999999887652 2221 3333334333 334553
Q ss_pred CCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeE
Q 006731 354 GNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 354 ~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
.-+.++ -...++ +|...||+|-|.- ....+...-..+|..++|+|+|||.++-+..-++
T Consensus 165 ------a~~~~~--~s~rLP----fp~~~fDmvHcsr--c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 165 ------AMIGVL--GSQRLP----FPSNAFDMVHCSR--CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ------hhhhhh--cccccc----CCccchhhhhccc--ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 222221 134566 8899999998742 1112222223478889999999999998876665
No 234
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.72 E-value=0.00042 Score=62.08 Aligned_cols=100 Identities=30% Similarity=0.386 Sum_probs=67.8
Q ss_pred EEEECCCcchHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc--ccccc
Q 006731 301 VMDIGCGTGILSLFAAQAGA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE--LGESM 376 (633)
Q Consensus 301 VLDVGcGtG~lsl~~a~aGa--~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~--l~~~~ 376 (633)
|||+|||+|... .+++... ..++++|.++.++..++..... ... ..+.++.++... ++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~--- 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-------------GLVDFVVADALGGVLP--- 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-------------CceEEEEeccccCCCC---
Confidence 999999999977 4444432 3899999999998775444332 110 116788888776 44
Q ss_pred ccCC-CcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 377 QIQP-HSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 377 ~l~~-~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
+.. ..+|++.+....+ +.. ...++..+.+.|+|+|.++....
T Consensus 114 -~~~~~~~d~~~~~~~~~---~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 114 -FEDSASFDLVISLLVLH---LLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred -CCCCCceeEEeeeeehh---cCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 544 4799994332211 111 67788999999999999886543
No 235
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.65 E-value=0.00018 Score=76.17 Aligned_cols=112 Identities=21% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc--------CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA--------GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a--------Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
...++.+|||..||+|.+...+.+. ....++|+|+++.++..|+.++.-++... ....+.
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~------------~~~~i~ 110 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN------------SNINII 110 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC------------BGCEEE
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc------------cccccc
Confidence 4567789999999999988777762 34589999999999999988877666541 334688
Q ss_pred EccccccccccccCCCcccEEEEec-cccc------cc----------Ch-hhHHHHHHHHhhcccCCcEEE
Q 006731 366 QGMVEELGESMQIQPHSVDVLVSEW-MGYC------LL----------YE-SMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 366 ~gd~e~l~~~~~l~~~~~DvIvse~-mg~~------L~----------~e-~~l~~vl~a~~r~LkpgG~li 419 (633)
.+|....+.. ....+||+||+++ ++.. .. .. ..--.++....+.|++||++.
T Consensus 111 ~~d~l~~~~~--~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 111 QGDSLENDKF--IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp ES-TTTSHSC--TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccc--ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 8887654410 1136899999985 2222 00 00 011236777889999999865
No 236
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.63 E-value=0.00025 Score=74.23 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=88.2
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...++..|||+.+|.|.=+..++.. + ...|+|+|+++.-+...+.++++.|. .++.++..|...
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--------------~~v~~~~~D~~~ 147 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--------------FNVIVINADARK 147 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---------------SSEEEEESHHHH
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--------------ceEEEEeecccc
Confidence 3578899999999999988887776 2 46999999999999999999999998 678888888877
Q ss_pred cccccccCCCcccEEEEecc----cccccCh--------hh-------HHHHHHHHhhcc----cCCcEEEeecceeE
Q 006731 372 LGESMQIQPHSVDVLVSEWM----GYCLLYE--------SM-------LSSVLFARDQWL----KPGGAILPDTATMF 426 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~m----g~~L~~e--------~~-------l~~vl~a~~r~L----kpgG~lip~~~t~~ 426 (633)
.... .+...||.|+...- |..--.. .. -..+|....+++ ||||+++-++|++.
T Consensus 148 ~~~~--~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 148 LDPK--KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHH--HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred cccc--ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 6311 22346999998632 2211111 11 135788889999 99999999999873
No 237
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.62 E-value=5.9e-05 Score=74.05 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=66.8
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
...+|+|.-||.|.-+...|..|+ .|++||++|.-++.|+.+++-.|.+ ++|+|++||+.++-...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~-------------~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVP-------------DRITFICGDFLDLASKL 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCC-------------ceeEEEechHHHHHHHH
Confidence 567899999999888777777777 8999999999999999999999998 99999999999876554
Q ss_pred ccCCCcccEEEEe
Q 006731 377 QIQPHSVDVLVSE 389 (633)
Q Consensus 377 ~l~~~~~DvIvse 389 (633)
++....+|+|.-.
T Consensus 160 q~~K~~~~~vf~s 172 (263)
T KOG2730|consen 160 KADKIKYDCVFLS 172 (263)
T ss_pred hhhhheeeeeecC
Confidence 4555567777743
No 238
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=5.5e-05 Score=70.88 Aligned_cols=121 Identities=21% Similarity=0.342 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~ 361 (633)
+..-.|++......|.+||++|.|- |+-++++|.. ..+.|...|-++..++-.+++...|... ...+
T Consensus 16 ala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s-----------~~ts 84 (201)
T KOG3201|consen 16 ALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS-----------SLTS 84 (201)
T ss_pred HHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc-----------ccce
Confidence 3444566666677889999999994 7778877765 4578999999999998888888777432 1133
Q ss_pred EEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 362 I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+.++.-....-. .+.....||+|++. -++++.....++.+.+.++|+|.|.-+.
T Consensus 85 c~vlrw~~~~aq--sq~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 85 CCVLRWLIWGAQ--SQQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ehhhHHHHhhhH--HHHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 333333322211 11234689999984 3455566678899999999999998653
No 239
>PRK10742 putative methyltransferase; Provisional
Probab=97.60 E-value=0.00023 Score=72.20 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=72.1
Q ss_pred hhhhHHHHHHHHhCCCCCCCC--EEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 006731 279 KVRTDSYRQAILENPSLMKGA--VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNI 356 (633)
Q Consensus 279 ~~R~~~y~~aI~~~~~~~~~~--~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~ 356 (633)
..+.+...+|+ .+.+|. +|||+-+|+|..++.++..|++ |++||.++.+....++.++..... .....
T Consensus 72 ~g~~~~l~kAv----glk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~-----~~~~~ 141 (250)
T PRK10742 72 GGRGEAVAKAV----GIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYAD-----AEIGG 141 (250)
T ss_pred CCCccHHHHHh----CCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhc-----cccch
Confidence 34445555544 455666 9999999999999999999995 999999999998888888763110 00000
Q ss_pred CCCCcEEEEEccccccccccccCCCcccEEEEecc
Q 006731 357 NNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM 391 (633)
Q Consensus 357 ~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~m 391 (633)
....++++++++..++-.. . ...||+|+..+|
T Consensus 142 ~~~~ri~l~~~da~~~L~~--~-~~~fDVVYlDPM 173 (250)
T PRK10742 142 WLQERLQLIHASSLTALTD--I-TPRPQVVYLDPM 173 (250)
T ss_pred hhhceEEEEeCcHHHHHhh--C-CCCCcEEEECCC
Confidence 0115799999999887532 2 247999999887
No 240
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.57 E-value=8.2e-05 Score=79.37 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=94.1
Q ss_pred HHHHhhcccCCcEEEeecceeEEEEecCC--CCCccccccccCccccccchhhhhh-------hCCCCeEEEcCCCCccC
Q 006731 405 LFARDQWLKPGGAILPDTATMFVAGFGRG--GTSLPFWENVYGFTMSCVGREVVQD-------AAGIPIVDVVDDHDLVT 475 (633)
Q Consensus 405 l~a~~r~LkpgG~lip~~~t~~~~~~~~~--~~~~~~w~~vyG~d~s~~~~~~~~e-------~~~~p~v~~~~~~~lls 475 (633)
..++...+-|+-++.|..+.+.+.|.... .....--.++.|||++.|....... ...+|++++ +..+++
T Consensus 455 ~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~ 532 (636)
T KOG1501|consen 455 VEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIASDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKG 532 (636)
T ss_pred HHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcccccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecC
Confidence 34556778899999999999988875422 2222223478999999988543321 122577777 788999
Q ss_pred CCeeEEEeeCCCCCCCCceeeEEEEEEeeeCCCCCCccccccCcceeEEEEEEEEeeeccccCCCCCEEEecCCCC----
Q 006731 476 DSVVLQTFDLATMKHDEVDFTTSVELEPKLGDSTSNSTELRSTSTWCYGIVLWFDAGFTSRFCKEKPVVLSTSPYT---- 551 (633)
Q Consensus 476 ~p~~i~~~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~g~~~wFd~~f~~~~~~~~~v~lST~P~~---- 551 (633)
+|..+.+|++......+ ...+.+.+. |.-|++++|+++.|++ +.||||-.+
T Consensus 533 d~~eIL~F~~~~~V~~Q-----k~~V~i~~~-------------~sS~A~~mWME~~~~~-------~nLSTGLL~~~~~ 587 (636)
T KOG1501|consen 533 DAVEILRFPIDGRVSSQ-----KCVVNIDNM-------------SSSNAIPMWMEWEFGG-------INLSTGLLSISSA 587 (636)
T ss_pred CceeEEEeccCCccccc-----eeEEEccCC-------------CccccceeeEEeeeCc-------eeecccceeecCC
Confidence 99999999998755433 344666666 8899999999999974 778887332
Q ss_pred -C---CCCccceEEec
Q 006731 552 -P---KTHWSQTIITF 563 (633)
Q Consensus 552 -~---~thW~Q~v~~l 563 (633)
- -.|.||+|++.
T Consensus 588 G~~~WN~~~KQ~VYF~ 603 (636)
T KOG1501|consen 588 GVPEWNKGYKQGVYFP 603 (636)
T ss_pred CCcccCccccceeEEE
Confidence 1 24669999886
No 241
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.56 E-value=5.4e-05 Score=66.80 Aligned_cols=101 Identities=24% Similarity=0.335 Sum_probs=44.7
Q ss_pred EEECCCcchHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 302 MDIGCGTGILSLFAAQA----GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 302 LDVGcGtG~lsl~~a~a----Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
|+||+..|..++.++++ +..++++||..+. .+.+++.++..++. +++++++++..+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-------------~~~~~~~g~s~~~l~~-- 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-------------DRVEFIQGDSPDFLPS-- 64 (106)
T ss_dssp --------------------------EEEESS-------------GGG--------------BTEEEEES-THHHHHH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-------------CeEEEEEcCcHHHHHH--
Confidence 68999999888877765 2248999999996 33455555555665 7899999999876422
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++.+++|+|+..... .+ ......+..+.+.|+|||+++.+.
T Consensus 65 ~~~~~~dli~iDg~H---~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 65 LPDGPIDLIFIDGDH---SY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp HHH--EEEEEEES------H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred cCCCCEEEEEECCCC---CH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 334789999965421 11 334556777888999999999754
No 242
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=97.56 E-value=5.1e-05 Score=78.11 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=61.3
Q ss_pred CCCceeecCCCCCC-CHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhcccccccccCCccCCHHHHHHHHH
Q 006731 44 ESGFLCLFCDAGYS-SCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLH 122 (633)
Q Consensus 44 ~~~~~CLFC~~~~~-~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~~~~~C~~C~~~~~~~~~~~~Hm~ 122 (633)
.-..+||||...+. +-.+.|.||...|+|++..- -+....=.|+.-|..+....+|++|.+.|..+..|+.||+
T Consensus 142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlp-----DniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMr 216 (423)
T KOG2482|consen 142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLP-----DNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMR 216 (423)
T ss_pred eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCC-----cceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHH
Confidence 46789999987766 88999999999999988542 1122223466677788888889999999999999999999
Q ss_pred Hhc
Q 006731 123 EAY 125 (633)
Q Consensus 123 ~~~ 125 (633)
++.
T Consensus 217 kK~ 219 (423)
T KOG2482|consen 217 KKR 219 (423)
T ss_pred hcc
Confidence 863
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.54 E-value=0.00069 Score=70.10 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=65.9
Q ss_pred CCCEEEEECCCcc-hHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHH-hCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 297 KGAVVMDIGCGTG-ILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAK-DNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 297 ~~~~VLDVGcGtG-~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~-~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..++|+=||+|+= +.++.+++. |. ..|+++|+++.+++.|++.++ ..++. .+++|+.+|+.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-------------KRMSFITADVLDV 186 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--------------SSEEEEES-GGGG
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-------------CCeEEEecchhcc
Confidence 3469999999984 455666654 43 379999999999999999988 56776 8999999999887
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
. ..-..||+|+...+ .......-..++..+.+.++||+.++..
T Consensus 187 ~----~dl~~~DvV~lAal--Vg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 T----YDLKEYDVVFLAAL--VGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -----GG----SEEEE-TT---S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred c----cccccCCEEEEhhh--cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6 33468999985432 0111224678999999999999998844
No 244
>PHA01634 hypothetical protein
Probab=97.51 E-value=0.00034 Score=63.07 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCC
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDF 345 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl 345 (633)
..++++|+|||++.|-.+++++-.||++|+|+|.++...+..+++.+.|..
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 367899999999999999999999999999999999999999998887655
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.50 E-value=0.00072 Score=71.02 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=89.5
Q ss_pred CCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.-.+||-+|.|.|+-...+.|. +..+|+-||.+|.|++.++...... ..|..++...+++++..|...+-+.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr-------~~N~~sf~dpRv~Vv~dDAf~wlr~ 361 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLR-------ALNQGSFSDPRVTVVNDDAFQWLRT 361 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhh-------hhccCCccCCeeEEEeccHHHHHHh
Confidence 3468999999999999999998 4789999999999999998433221 1234566778999999999987642
Q ss_pred cccCCCcccEEEEecccccccChhhH--HHHHHHHhhcccCCcEEEeecceeEEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESML--SSVLFARDQWLKPGGAILPDTATMFVAG 429 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l--~~vl~a~~r~LkpgG~lip~~~t~~~~~ 429 (633)
..+.||+||....+-.-...+.+ ..+..-..+.|+++|+++.+..+.|..|
T Consensus 362 ---a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 362 ---AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred ---hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 34689999986533211111111 2355666889999999998877666544
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.43 E-value=0.00065 Score=70.96 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=52.3
Q ss_pred CCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCcEEEEEccccc-cc
Q 006731 298 GAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQGMVEE-LG 373 (633)
Q Consensus 298 ~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~n-gl~~~~~~~~~~~~~~~~I~vi~gd~e~-l~ 373 (633)
..++||||+|. ++..+..++. |. +++|.|+++..++.|+++++.| ++. ++|++++..-.. +-
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~-------------~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLE-------------SRIELRKQKNPDNIF 168 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-T-------------TTEEEEE--ST-SST
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccc-------------cceEEEEcCCccccc
Confidence 56899999998 4777777776 66 9999999999999999999999 998 999998764322 21
Q ss_pred cccccCCCcccEEEEecccc
Q 006731 374 ESMQIQPHSVDVLVSEWMGY 393 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~ 393 (633)
.....+.+.||+.+|++..|
T Consensus 169 ~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp TTSTT--S-EEEEEE-----
T ss_pred hhhhcccceeeEEecCCccc
Confidence 11113347899999997534
No 247
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.42 E-value=0.0003 Score=72.13 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCC----------CCC--------
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS----------EGN-------- 355 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~----------~~~-------- 355 (633)
...+|.++||||||+-+.....|..-+++++..|.++.-.+..++-++..+- . .| .+.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a---~-DWs~~~~~v~~lEg~~~~~~e~e 128 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGA---F-DWSPFWKYVCELEGKREKWEEKE 128 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS------THHHHHHHHHHTTSSSGHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCC---C-CccHHHHHHHhccCCcchhhhHH
Confidence 3457889999999998887777766678999999999888777666554311 0 11 000
Q ss_pred CCCCCcEE-EEEccccccccccc---cCCCcccEEEEec-ccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 356 INNAGKME-VVQGMVEELGESMQ---IQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 356 ~~~~~~I~-vi~gd~e~l~~~~~---l~~~~~DvIvse~-mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
..-+..|+ ++.+|+...+.-.. +| .+||+|+|.. +.+.-.........+..+.++|||||.++.
T Consensus 129 ~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p-~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 129 EKLRRAVKQVVPCDVTQPNPLDPPVVLP-PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp HHHHHHEEEEEE--TTSSSTTTTS-SS--SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHhhceEEEeeccCCCCCCccccCc-cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 00122344 78899987552111 22 4699999853 223333455677888999999999999994
No 248
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.42 E-value=0.0015 Score=68.00 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=43.5
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhC
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDN 343 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~n 343 (633)
...|......+...+|||+|||+|.-...+... ...++++||.|+.|++.++.++...
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 334444445678899999999999755544443 3568999999999999999887643
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.35 E-value=0.0018 Score=64.12 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 006731 280 VRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (633)
Q Consensus 280 ~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~ 358 (633)
.|..+..+.+. .+..+.||||--|.|..++.+.+ +..++++|+++..++.|.++++++++.
T Consensus 5 ~RL~~va~~V~------~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~------------ 66 (226)
T COG2384 5 KRLTTVANLVK------QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS------------ 66 (226)
T ss_pred HHHHHHHHHHH------cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc------------
Confidence 35555555553 35569999999999999999986 579999999999999999999999998
Q ss_pred CCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhccc
Q 006731 359 AGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLK 413 (633)
Q Consensus 359 ~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~Lk 413 (633)
++|++..+|....- -+...+|+|+.-.||-- .+..++.+....|+
T Consensus 67 -~~i~vr~~dgl~~l----~~~d~~d~ivIAGMGG~-----lI~~ILee~~~~l~ 111 (226)
T COG2384 67 -ERIDVRLGDGLAVL----ELEDEIDVIVIAGMGGT-----LIREILEEGKEKLK 111 (226)
T ss_pred -ceEEEeccCCcccc----CccCCcCEEEEeCCcHH-----HHHHHHHHhhhhhc
Confidence 99999999985443 23458999998777643 34556666666655
No 250
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0027 Score=61.95 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=83.3
Q ss_pred HHHHHHh---CCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 006731 285 YRQAILE---NPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 285 y~~aI~~---~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~ 360 (633)
...+|+. +..+.+|.+||=+|+-+|...-..+.- |...|||||.|+.+.+..-..+++. .
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----------------~ 124 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----------------P 124 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----------------C
Confidence 4456654 345778999999999999887777775 6668999999998776655555542 6
Q ss_pred cEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 361 ~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+|-.+.+|+..-.....+ .+.+|+|+... .......-+..++..+||+||.++.
T Consensus 125 Ni~PIL~DA~~P~~Y~~~-Ve~VDviy~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 125 NIIPILEDARKPEKYRHL-VEKVDVIYQDV-----AQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred CceeeecccCCcHHhhhh-cccccEEEEec-----CCchHHHHHHHHHHHhcccCCeEEE
Confidence 777788888754432222 46799999764 2334566788889999999997774
No 251
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00086 Score=66.16 Aligned_cols=100 Identities=25% Similarity=0.310 Sum_probs=69.3
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
+.++.+|+|+|+-+|..+..+++. |+ .+|+|||+.|.-. . .+|.++++|+++-
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~--------------~~V~~iq~d~~~~ 97 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I--------------PGVIFLQGDITDE 97 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C--------------CCceEEeeeccCc
Confidence 456799999999999999999997 43 3599999988432 1 4599999999874
Q ss_pred ccc----cccCCCcccEEEEeccc----cccc-C---hhhHHHHHHHHhhcccCCcEEE
Q 006731 373 GES----MQIQPHSVDVLVSEWMG----YCLL-Y---ESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 373 ~~~----~~l~~~~~DvIvse~mg----~~L~-~---e~~l~~vl~a~~r~LkpgG~li 419 (633)
+.. ..++..++|+|+|.... .... + ......++.-...+|+|||.++
T Consensus 98 ~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 98 DTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred cHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 311 11344568999997532 1111 1 1112345566678999999988
No 252
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.20 E-value=0.0065 Score=64.50 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=76.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a----G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~ 358 (633)
.+...|... +.++.+++|+|||+|.-+..+.++ + ...+++||+|..+++.+.+.+....+
T Consensus 65 ~~~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------------- 129 (319)
T TIGR03439 65 KHSSDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------------- 129 (319)
T ss_pred HHHHHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-------------
Confidence 344555554 346779999999999654443332 2 24799999999999999888873344
Q ss_pred CCcEEE--EEcccccccccccc--CCCcccEEEEeccccccc--ChhhHHHHHHHHhh-cccCCcEEEe
Q 006731 359 AGKMEV--VQGMVEELGESMQI--QPHSVDVLVSEWMGYCLL--YESMLSSVLFARDQ-WLKPGGAILP 420 (633)
Q Consensus 359 ~~~I~v--i~gd~e~l~~~~~l--~~~~~DvIvse~mg~~L~--~e~~l~~vl~a~~r-~LkpgG~lip 420 (633)
..+++ +.|+..+......- ......+++. +|+.+. .......+|..+.+ .|+|||.++.
T Consensus 130 -p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 130 -SHVRCAGLLGTYDDGLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred -CCeEEEEEEecHHHHHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 34555 88888664211001 1234566665 443332 23345678889988 9999999884
No 253
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.14 E-value=0.0016 Score=74.03 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=54.4
Q ss_pred CCCEEEEECCCcchHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAG---------ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aG---------a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
.+.+|||.|||+|.+...+++.. ...++|+|+++.++..|+.++...+. ..+.++.+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--------------~~~~i~~~ 96 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--------------LEINVINF 96 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--------------CCceeeec
Confidence 45699999999999888777642 14789999999999999988876541 23445555
Q ss_pred ccccccccc-ccCCCcccEEEEec
Q 006731 368 MVEELGESM-QIQPHSVDVLVSEW 390 (633)
Q Consensus 368 d~e~l~~~~-~l~~~~~DvIvse~ 390 (633)
+........ .-..++||+||+++
T Consensus 97 d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 97 NSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred ccccccccccccccCcccEEEeCC
Confidence 433211000 01125899999996
No 254
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.09 E-value=0.001 Score=71.68 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=87.8
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
..+++..++|+|||-|..+...+..+...++|++.++.-+.++.......++. ++-.++.+++-..+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-------------~k~~~~~~~~~~~~ 173 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-------------NKCNFVVADFGKMP 173 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-------------hhcceehhhhhcCC
Confidence 35677799999999999999999987779999999998888887777766665 55566777887777
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+++..||.+.+.- ...|.+.+..++.++.|.++|||..+-
T Consensus 174 ----fedn~fd~v~~ld---~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 174 ----FEDNTFDGVRFLE---VVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ----CCccccCcEEEEe---ecccCCcHHHHHHHHhcccCCCceEEe
Confidence 7889999998732 244557788899999999999999883
No 255
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.07 E-value=0.0036 Score=67.28 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=88.5
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
.+...+|.+|||+.+-+|.=+.++|.. +-..|+|.|.+..-+...+.++.+.|+ .+..+...|.
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--------------~ntiv~n~D~ 301 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV--------------TNTIVSNYDG 301 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC--------------CceEEEccCc
Confidence 345678999999999999766666654 456899999999999999999999998 5566677777
Q ss_pred cccccccccCCCcccEEEEeccccc--cc-----------------ChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYC--LL-----------------YESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~--L~-----------------~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
.+++... +++ +||-|+.....++ +. +...-..++.....++++||+++-++|++-+
T Consensus 302 ~ef~~~~-~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 302 REFPEKE-FPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ccccccc-cCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 7664221 444 8999986532221 21 1122346777788899999999999999854
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.00 E-value=0.0039 Score=57.97 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=59.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhh-
Q 006731 322 RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESM- 400 (633)
Q Consensus 322 ~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~- 400 (633)
+|+|.|+-+.+++.++++++..++. +++++++..=+.+... ++.+++|+++.+ +||..-+...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-------------~~v~li~~sHe~l~~~--i~~~~v~~~iFN-LGYLPggDk~i 64 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-------------DRVTLILDSHENLDEY--IPEGPVDAAIFN-LGYLPGGDKSI 64 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-------------SGEEEEES-GGGGGGT----S--EEEEEEE-ESB-CTS-TTS
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-------------CcEEEEECCHHHHHhh--CccCCcCEEEEE-CCcCCCCCCCC
Confidence 6999999999999999999999987 8999999998888743 333589999987 4775433221
Q ss_pred ---H---HHHHHHHhhcccCCcEEEe
Q 006731 401 ---L---SSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 401 ---l---~~vl~a~~r~LkpgG~lip 420 (633)
. -..+.+..++|+|||+++.
T Consensus 65 ~T~~~TTl~Al~~al~lL~~gG~i~i 90 (140)
T PF06962_consen 65 TTKPETTLKALEAALELLKPGGIITI 90 (140)
T ss_dssp B--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CcCcHHHHHHHHHHHHhhccCCEEEE
Confidence 2 2456677889999999983
No 257
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.84 E-value=0.0033 Score=67.79 Aligned_cols=96 Identities=26% Similarity=0.387 Sum_probs=64.9
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc-c-c
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM-V-E 370 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd-~-e 370 (633)
..++.+|+-+|||+ |+++..+++. |+++|+++|.++.-++.|++.... +.+.....+ . .
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----------------~~~~~~~~~~~~~ 228 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-----------------DVVVNPSEDDAGA 228 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-----------------eEeecCccccHHH
Confidence 34455999999999 9998888887 899999999999999888874421 111111111 0 0
Q ss_pred ccccccccC-CCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 371 ELGESMQIQ-PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 371 ~l~~~~~l~-~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
... ... ...+|+++ |..| ....+....++++|||.++
T Consensus 229 ~~~---~~t~g~g~D~vi-e~~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 229 EIL---ELTGGRGADVVI-EAVG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred HHH---HHhCCCCCCEEE-ECCC--------CHHHHHHHHHHhcCCCEEE
Confidence 010 022 24799998 4444 2346677778999999988
No 258
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.012 Score=64.70 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=80.8
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
-++|-+|||.--++..+-+.|...|+-+|.|+..++.+...-+... .-+.+...++..+. +
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---------------~~~~~~~~d~~~l~----f 110 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---------------PEMQMVEMDMDQLV----F 110 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---------------cceEEEEecchhcc----C
Confidence 3999999999999999999999999999999988866554432111 56889999999998 9
Q ss_pred CCCcccEEEEec-ccccccChhh------HHHHHHHHhhcccCCcEEE
Q 006731 379 QPHSVDVLVSEW-MGYCLLYESM------LSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 379 ~~~~~DvIvse~-mg~~L~~e~~------l~~vl~a~~r~LkpgG~li 419 (633)
++++||+|+-.. ++..+..+.. ....+..+.|+|+|||+.+
T Consensus 111 edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 111 EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 999999999864 3443333332 3457888999999999976
No 259
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0082 Score=55.69 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+..+.+|+|.|.|.+.+.+++.|+..-+|+|.++-.+..++-..-+.|.. ....|...|+-.++
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-------------k~trf~RkdlwK~d-- 135 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-------------KSTRFRRKDLWKVD-- 135 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-------------cchhhhhhhhhhcc--
Confidence 455689999999999999999999889999999999998998888888887 88889999988877
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+.+ |.-++. ..-|++++.+-..+..-|..+..++
T Consensus 136 --l~d--y~~vvi------Fgaes~m~dLe~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 136 --LRD--YRNVVI------FGAESVMPDLEDKLRTELPANTRVV 169 (199)
T ss_pred --ccc--cceEEE------eehHHHHhhhHHHHHhhCcCCCeEE
Confidence 543 333332 1245566666666665666666666
No 260
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.61 E-value=0.0085 Score=61.59 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=68.8
Q ss_pred CEEEEECCCc--chHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 299 AVVMDIGCGT--GILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 299 ~~VLDVGcGt--G~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
...||||||- -...-..|+. ...+|+-||..|..+..++..+..+.- ++..++++|+.+...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--------------g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--------------GRTAYVQADLRDPEA 135 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--------------SEEEEEE--TT-HHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--------------ccEEEEeCCCCCHHH
Confidence 5799999994 2233344444 235999999999999999999876632 458999999987542
Q ss_pred c---------cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 375 S---------MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 375 ~---------~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
. .++ .+++=+++...+ +++..+.....++......|.||..++.+..+
T Consensus 136 iL~~p~~~~~lD~-~rPVavll~~vL-h~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 136 ILAHPEVRGLLDF-DRPVAVLLVAVL-HFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp HHCSHHHHCC--T-TS--EEEECT-G-GGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred HhcCHHHHhcCCC-CCCeeeeeeeee-ccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 1 112 355666665544 45666667899999999999999999987654
No 261
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.57 E-value=0.012 Score=62.03 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=67.3
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
+...+...+|.+++|.-+|.|..|..++++ +..+|+|+|.++.+++.|++.++.. . ++++++++
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~-------------~R~~~i~~ 76 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--E-------------GRVVLIHD 76 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--C-------------CcEEEEeC
Confidence 333445567889999999999999999886 4469999999999999999987643 3 78999999
Q ss_pred cccccccccc-cCCCcccEEEEe
Q 006731 368 MVEELGESMQ-IQPHSVDVLVSE 389 (633)
Q Consensus 368 d~e~l~~~~~-l~~~~~DvIvse 389 (633)
+..++..... .+..++|.|+..
T Consensus 77 nF~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 77 NFANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred CHHHHHHHHHhcCCCcccEEEEe
Confidence 9988753321 233579999975
No 262
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.56 E-value=0.0081 Score=65.31 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=78.4
Q ss_pred CCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-cEEEEEccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG-KMEVVQGMVEELG 373 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~-~I~vi~gd~e~l~ 373 (633)
++.+|||.=+|+|+=++..++- |+.+|++-|+|+.+++..+++++.|++. + ++++.+.|+..+-
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-------------~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-------------DERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-------------GCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-------------CceEEEehhhHHHHh
Confidence 3468999999999998888876 6789999999999999999999999997 5 7999999988764
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. .....||+|=..++|+ +.-++++..+.++.||.+..+.
T Consensus 116 ~---~~~~~fD~IDlDPfGS-------p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 116 Y---SRQERFDVIDLDPFGS-------PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp C---HSTT-EEEEEE--SS---------HHHHHHHHHHEEEEEEEEEEE
T ss_pred h---hccccCCEEEeCCCCC-------ccHhHHHHHHHhhcCCEEEEec
Confidence 1 1458899998777654 3558888888999999998543
No 263
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.55 E-value=0.014 Score=61.81 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=72.7
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
...+|+|.|.|.++..+.. -..+|-+|+.....+-.++.... . + |+.+-||+..-.
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~----------------g-V~~v~gdmfq~~----- 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-P----------------G-VEHVAGDMFQDT----- 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-C----------------C-cceecccccccC-----
Confidence 7899999999999888888 45589999999877645544432 2 2 666777775433
Q ss_pred CCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 379 ~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
| +-|+|+.-|+-+.+. ...+-.+|+.+.+-|+|||.++.-
T Consensus 235 P--~~daI~mkWiLhdwt-DedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 235 P--KGDAIWMKWILHDWT-DEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred C--CcCeEEEEeecccCC-hHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3 567999988766553 446788999999999999998843
No 264
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.54 E-value=0.0013 Score=67.68 Aligned_cols=96 Identities=23% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCCEEEEECCCcchHHH-HHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 297 KGAVVMDIGCGTGILSL-FAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl-~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+.+|.|+-+|-|.+++ ++.++||+.|+|+|.+|.+++..++.+..|+.. ++..++.||-+...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-------------~r~~i~~gd~R~~~-- 258 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-------------DRCRITEGDNRNPK-- 258 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-------------HHHHhhhccccccC--
Confidence 45899999999999999 999999999999999999999999999999887 88888888887765
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~ 417 (633)
+....|-|...++ ...+..++.. .+.|||.|-
T Consensus 259 ---~~~~AdrVnLGLl---PSse~~W~~A----~k~Lk~egg 290 (351)
T KOG1227|consen 259 ---PRLRADRVNLGLL---PSSEQGWPTA----IKALKPEGG 290 (351)
T ss_pred ---ccccchheeeccc---cccccchHHH----HHHhhhcCC
Confidence 5678888885332 3334444444 345676544
No 265
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.01 Score=61.57 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=73.0
Q ss_pred CCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCC------------CCC--------CC-----
Q 006731 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWW------------DRP--------QS----- 352 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~------------~~~--------~~----- 352 (633)
..+||--|||.|.|+.-+|..|. ++-|-|.|--|+ .+...+-.+.... .+. +.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Ml-i~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFML-ICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHH-HHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 46899999999999999999998 677889999888 6655543221100 000 00
Q ss_pred -CC-CCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 353 -EG-NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 353 -~~-~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.. -+...+....-.||..++-... -..+.+|+||.. +|.......-..++.+.+.|||||+.+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s-~~~~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTS-SGAGSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccccCCCCCCccccccceeEEecCc-CCCCccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEE
Confidence 00 1111222333345554443110 112469999975 446555666779999999999999988
No 266
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.52 E-value=0.0016 Score=66.76 Aligned_cols=112 Identities=22% Similarity=0.244 Sum_probs=82.2
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
.+.++... ..+..+||+|||.|-.... .....++|.|.+...+..|++. +...+
T Consensus 36 v~qfl~~~---~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~--------------------~~~~~ 89 (293)
T KOG1331|consen 36 VRQFLDSQ---PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS--------------------GGDNV 89 (293)
T ss_pred HHHHHhcc---CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC--------------------CCcee
Confidence 34445442 3489999999999854211 1223689999999888666531 22256
Q ss_pred EEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEEEEec
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFVAGFG 431 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~~~~~ 431 (633)
..+|+..++ .+...||.+++-.+-+.|........++....|.|+|||.++ +|+.+..
T Consensus 90 ~~ad~l~~p----~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~l-----vyvwa~~ 147 (293)
T KOG1331|consen 90 CRADALKLP----FREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNAL-----VYVWALE 147 (293)
T ss_pred ehhhhhcCC----CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE-----EEEehhh
Confidence 778998888 788999999998777778777778899999999999999987 4555544
No 267
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.50 E-value=0.013 Score=61.20 Aligned_cols=98 Identities=22% Similarity=0.280 Sum_probs=67.0
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc--c
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM--V 369 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd--~ 369 (633)
...+|.+||-+|+|+ |++++.+|++ ||++|+.+|.++..++.|++. |. ..+...... +
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga--------------~~~~~~~~~~~~ 227 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GA--------------TVTDPSSHKSSP 227 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CC--------------eEEeeccccccH
Confidence 567899999999998 9999999999 999999999999999999883 32 222222211 1
Q ss_pred ccc---ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EEL---GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l---~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.++ ... .+....+|+.+.-. -....+++....+++||.++
T Consensus 228 ~~~~~~v~~-~~g~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 228 QELAELVEK-ALGKKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred HHHHHHHHh-hccccCCCeEEEcc---------CchHHHHHHHHHhccCCEEE
Confidence 111 100 02234588888421 12445566677899999977
No 268
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.37 E-value=0.0093 Score=60.23 Aligned_cols=89 Identities=24% Similarity=0.228 Sum_probs=52.4
Q ss_pred CCCCC--CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKG--AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~--~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
.+.++ .+|||.-+|-|.-++.+|..|+ +|+++|.||.+....+.-++...-. .........+|+++++|..+
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~-----~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQD-----PELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHS-----TTTHHHHHHHEEEEES-CCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhC-----cHhHHHHHhCCEEEcCCHHH
Confidence 34444 4999999999999999998898 8999999998876665433321100 00001112589999999988
Q ss_pred cccccccCCCcccEEEEecc
Q 006731 372 LGESMQIQPHSVDVLVSEWM 391 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~m 391 (633)
+-. .+..+||||+..+|
T Consensus 144 ~L~---~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 144 YLR---QPDNSFDVVYFDPM 160 (234)
T ss_dssp HCC---CHSS--SEEEE--S
T ss_pred HHh---hcCCCCCEEEECCC
Confidence 642 44689999999988
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.022 Score=55.11 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc-cccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-G-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG-MVEE 371 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-G-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g-d~e~ 371 (633)
+.++.+|||+||.+|..+..+.+. + ...|.|||+-...- . ..++++++ |+.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-----------~--------------~Ga~~i~~~dvtd 121 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-----------P--------------EGATIIQGNDVTD 121 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-----------C--------------CCcccccccccCC
Confidence 567899999999999999999887 2 36899999854321 1 44666766 5554
Q ss_pred ccc----ccccCCCcccEEEEecc----ccc-ccChhh---HHHHHHHHhhcccCCcEEE
Q 006731 372 LGE----SMQIQPHSVDVLVSEWM----GYC-LLYESM---LSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 372 l~~----~~~l~~~~~DvIvse~m----g~~-L~~e~~---l~~vl~a~~r~LkpgG~li 419 (633)
-.. ...+|..++|+|+|.+. |.- +.+... ..+++.-....++|+|.++
T Consensus 122 p~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 122 PETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred HHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 220 01257789999999752 111 112221 2344555566788999988
No 270
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.09 E-value=0.0025 Score=62.23 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCC--CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 006731 283 DSYRQAILENPS--LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 283 ~~y~~aI~~~~~--~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~ 360 (633)
+.|++.+.-... ...+.++||+|+|.|-.+..++.. ..+|||.|.|..|....+ ..++ .
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~----kk~y--------------n 156 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLK----KKNY--------------N 156 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHh----hcCC--------------c
Confidence 346666554422 234589999999999999887765 458999999999875544 3343 3
Q ss_pred cEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccC-CcEEEee
Q 006731 361 KMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKP-GGAILPD 421 (633)
Q Consensus 361 ~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~Lkp-gG~lip~ 421 (633)
.++.+. -.. .+-++|+|.|-.+ |...-.+-.++..+...|+| +|++|.+
T Consensus 157 Vl~~~e----w~~-----t~~k~dli~clNl---LDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 VLTEIE----WLQ-----TDVKLDLILCLNL---LDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eeeehh----hhh-----cCceeehHHHHHH---HHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 333221 111 2357999987321 22223456788888899998 7887743
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.06 E-value=0.03 Score=59.61 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=63.1
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc-c
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM-V 369 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd-~ 369 (633)
....+|++|+-+|+|- |.++..+|++ |+ +|+|+|.|+.-.+.|++.-+ -.++.+. .
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGA--------------------d~~i~~~~~ 220 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGA--------------------DHVINSSDS 220 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCC--------------------cEEEEcCCc
Confidence 3568899999999992 4788888885 85 99999999998888887633 2334433 2
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..... . .+.+|+|+.-. . ...+....+.|++||.++
T Consensus 221 ~~~~~---~-~~~~d~ii~tv--------~--~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 221 DALEA---V-KEIADAIIDTV--------G--PATLEPSLKALRRGGTLV 256 (339)
T ss_pred hhhHH---h-HhhCcEEEECC--------C--hhhHHHHHHHHhcCCEEE
Confidence 22220 1 13499999632 1 234455567899999998
No 272
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.02 E-value=0.022 Score=60.87 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=60.2
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..++.+||-.|||. |.++..+|++ |+++|++++.++...+.|++ .|.. ..+..-..++.++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~-------------~vi~~~~~~~~~~ 229 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD-------------KLVNPQNDDLDHY 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc-------------EEecCCcccHHHH
Confidence 34789999999986 7787777877 88789999999988766654 2331 1111111122222
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
. ...+.+|+|+- ..|. +..+....+.|++||.++.
T Consensus 230 ~----~~~g~~D~vid-~~G~--------~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 230 K----AEKGYFDVSFE-VSGH--------PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred h----ccCCCCCEEEE-CCCC--------HHHHHHHHHHhhcCCEEEE
Confidence 2 11235999984 2331 2244556678999999883
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.021 Score=59.99 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=65.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCc
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGK 361 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~ 361 (633)
+-.+.+......+..+++||||.|+|.-...+-.. -.+.++.+|.|+..-++...+.. |-.. ..
T Consensus 100 asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~-nv~t-------------~~ 165 (484)
T COG5459 100 ASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAE-NVST-------------EK 165 (484)
T ss_pred HHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHh-hccc-------------cc
Confidence 33444445556778899999999998766555444 23678899999977665555443 3221 11
Q ss_pred EEEEEccccccccccccC-CCcccEEEEecccccccC---hhhHHHHHHHHhhcccCCcEEEe
Q 006731 362 MEVVQGMVEELGESMQIQ-PHSVDVLVSEWMGYCLLY---ESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 362 I~vi~gd~e~l~~~~~l~-~~~~DvIvse~mg~~L~~---e~~l~~vl~a~~r~LkpgG~lip 420 (633)
...-.+++..-- ..+| ...|++++. ..-|+. |..+...+...-.+++|||.++.
T Consensus 166 td~r~s~vt~dR--l~lp~ad~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 166 TDWRASDVTEDR--LSLPAADLYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred CCCCCCccchhc--cCCCccceeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 111112222111 0022 245666664 122222 22234466667778999999884
No 274
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.84 E-value=0.022 Score=56.54 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=60.7
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
.++|||||=+..... ...+.-.|++||+++. .-.+.+.|..+.+ +
T Consensus 53 lrlLEVGals~~N~~--s~~~~fdvt~IDLns~-----------------------------~~~I~qqDFm~rp----l 97 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ-----------------------------HPGILQQDFMERP----L 97 (219)
T ss_pred ceEEeecccCCCCcc--cccCceeeEEeecCCC-----------------------------CCCceeeccccCC----C
Confidence 699999987543222 2234446999999871 1123566776665 4
Q ss_pred C---CCcccEEEEecccccccChhhHHHHHHHHhhcccCCcE
Q 006731 379 Q---PHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGA 417 (633)
Q Consensus 379 ~---~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~ 417 (633)
| .++||+|++..+-.++......-.++....++|+|+|.
T Consensus 98 p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 3 57999999987766666666777899999999999999
No 275
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.82 E-value=0.011 Score=60.95 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHH-HHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVA-TQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A-~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
-.+.+++|||+|||+|+.++++.+.|+..|...|.|...++.- -.++..+... ....+.......++.....++
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~-----~~~~~e~~~~~~i~~s~l~dg 187 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHA-----GVEEKENHKVDEILNSLLSDG 187 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhh-----hhhhhhcccceeccccccccc
Confidence 3578999999999999999999999988999999998776211 0000000000 000011112222233311111
Q ss_pred ccccccCCC--cccEEEEecccccccChhhHHHH-HHHHhhcccCCcEEEee
Q 006731 373 GESMQIQPH--SVDVLVSEWMGYCLLYESMLSSV-LFARDQWLKPGGAILPD 421 (633)
Q Consensus 373 ~~~~~l~~~--~~DvIvse~mg~~L~~e~~l~~v-l~a~~r~LkpgG~lip~ 421 (633)
.- ...+ .||+|.+.-+.|.. ...+.+ ...+..+++++|+++..
T Consensus 188 ~~---~~t~~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 188 VF---NHTERTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hh---hhccccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhhh
Confidence 10 1113 78988875444433 233334 66677888999988743
No 276
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.76 E-value=0.038 Score=54.74 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=63.1
Q ss_pred hhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-----CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCC
Q 006731 275 MISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-----GASRVIAVEASEKMAAVATQIAKDNDFWWDR 349 (633)
Q Consensus 275 mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-----Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~ 349 (633)
+++.+.-+-+|.+.|.+ .++++|+++|.-.|.-+++.|.. +..+|+|||+..... .++....+.+.
T Consensus 14 i~q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~--- 84 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMS--- 84 (206)
T ss_dssp ESS-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG-------
T ss_pred hhcCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhcccc---
Confidence 34445555667777776 46789999999998777666542 346999999964332 23334445665
Q ss_pred CCCCCCCCCCCcEEEEEccccccccccc---c-CCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 350 PQSEGNINNAGKMEVVQGMVEELGESMQ---I-QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 350 ~~~~~~~~~~~~I~vi~gd~e~l~~~~~---l-~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.+|++++|+..+...-.. + ......+|+-.. .-.++.. -..|.+...++++|+.+|.
T Consensus 85 ----------~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs---~H~~~hv-l~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 85 ----------PRITFIQGDSIDPEIVDQVRELASPPHPVLVILDS---SHTHEHV-LAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ----------TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSH-HHHHHHHHHT--TT-EEEE
T ss_pred ----------CceEEEECCCCCHHHHHHHHHhhccCCceEEEECC---CccHHHH-HHHHHHhCccCCCCCEEEE
Confidence 899999999876542111 1 112344555322 1223333 3455668899999999873
No 277
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.69 E-value=0.21 Score=50.59 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=63.5
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
++........|++||-||-+- +.|+.+|.. ..++|+.+|+.+.+++..++.+++.|+ . |+.++
T Consensus 35 ~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--------------~-i~~~~ 98 (243)
T PF01861_consen 35 ALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--------------P-IEAVH 98 (243)
T ss_dssp HHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----------------EEEE-
T ss_pred HHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--------------c-eEEEE
Confidence 333334557899999999664 555555554 356999999999999999999999998 4 99999
Q ss_pred ccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCc
Q 006731 367 GMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGG 416 (633)
Q Consensus 367 gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG 416 (633)
.|+.+--.. .+ .++||++++.+. | ....+.-++......||..|
T Consensus 99 ~DlR~~LP~-~~-~~~fD~f~TDPP-y---T~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 99 YDLRDPLPE-EL-RGKFDVFFTDPP-Y---TPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --TTS---T-TT-SS-BSEEEE----S---SHHHHHHHHHHHHHTB-STT
T ss_pred ecccccCCH-HH-hcCCCEEEeCCC-C---CHHHHHHHHHHHHHHhCCCC
Confidence 998764210 01 379999999874 2 22455667777777887655
No 278
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.51 E-value=0.057 Score=54.93 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=58.7
Q ss_pred hHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 006731 282 TDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 282 ~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~ 360 (633)
.+.+.+.+... ..+..+|+|||||.=.|++...... ...++|+|++..+++.....+...+..
T Consensus 92 Ld~fY~~if~~--~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-------------- 155 (251)
T PF07091_consen 92 LDEFYDEIFGR--IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-------------- 155 (251)
T ss_dssp HHHHHHHHCCC--S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--------------
T ss_pred HHHHHHHHHhc--CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--------------
Confidence 34455556553 3447899999999999988777653 239999999999999999998877764
Q ss_pred cEEEEEccccccccccccCCCcccEEEE
Q 006731 361 KMEVVQGMVEELGESMQIQPHSVDVLVS 388 (633)
Q Consensus 361 ~I~vi~gd~e~l~~~~~l~~~~~DvIvs 388 (633)
.++...|+..-+ +....|+.+.
T Consensus 156 -~~~~v~Dl~~~~-----~~~~~DlaLl 177 (251)
T PF07091_consen 156 -HDARVRDLLSDP-----PKEPADLALL 177 (251)
T ss_dssp -EEEEEE-TTTSH-----TTSEESEEEE
T ss_pred -cceeEeeeeccC-----CCCCcchhhH
Confidence 555555665443 4678999985
No 279
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.49 E-value=0.017 Score=63.78 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=63.3
Q ss_pred CEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccccc
Q 006731 299 AVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQI 378 (633)
Q Consensus 299 ~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l 378 (633)
..|||+.+|.|.++..+.... |..+-..+..-.-...++-..|+ |-+.+-=.|.++ .
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGL----------------IG~yhDWCE~fs----T 423 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGL----------------IGVYHDWCEAFS----T 423 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhccc----------------chhccchhhccC----C
Confidence 579999999999998887654 44433333211112233334454 333333333343 3
Q ss_pred CCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 379 QPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 379 ~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
-+.+||+|-+..+......--.+..++-+++|+|+|||.+|...
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 35899999986543333333456788999999999999999643
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.42 E-value=0.078 Score=59.83 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=37.3
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
..++.+|+-+|||. |+.++.+|++ |+ +|+++|.++..++.|++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 45789999999998 8888888887 98 89999999988877765
No 281
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.34 E-value=0.048 Score=54.68 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
++.+.+|.+||=+|+++|...-..+.. |. .-|||||.|+..=+.....+++. .+|-.|.-|+
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR----------------tNiiPIiEDA 214 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR----------------TNIIPIIEDA 214 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----------------CCceeeeccC
Confidence 567789999999999999877666665 43 47999999986543322222211 4455555555
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
....... ....-+|+|++... .......+.-+...+||+||-++.+.
T Consensus 215 rhP~KYR-mlVgmVDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 215 RHPAKYR-MLVGMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred CCchhee-eeeeeEEEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 5322111 11347888887532 22333444455678999999998653
No 282
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.16 E-value=0.17 Score=54.08 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=78.5
Q ss_pred CCCCCCCEEEEECCCcchHHHHHHHcCC---C--eEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 293 PSLMKGAVVMDIGCGTGILSLFAAQAGA---S--RVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGtG~lsl~~a~aGa---~--~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
+.+.+|.+|||+.+-+|.=+..+.++.. . .|+|-|.++.-+...+..+..-.- .++.+...
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~--------------~~~~v~~~ 216 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS--------------PNLLVTNH 216 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC--------------cceeeecc
Confidence 3567899999999999988877777632 2 799999999877666666533221 45555555
Q ss_pred ccccccccc-----ccCCCcccEEEEecc--cccccC-------h-----------hhHHHHHHHHhhcccCCcEEEeec
Q 006731 368 MVEELGESM-----QIQPHSVDVLVSEWM--GYCLLY-------E-----------SMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 368 d~e~l~~~~-----~l~~~~~DvIvse~m--g~~L~~-------e-----------~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
++...+... +.....||-|++... +-+.+. + ..--.++..-.++||+||.++-++
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 217 DASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 555444221 123467999987632 111110 0 001246677789999999999999
Q ss_pred ceeE
Q 006731 423 ATMF 426 (633)
Q Consensus 423 ~t~~ 426 (633)
|++-
T Consensus 297 CSLn 300 (375)
T KOG2198|consen 297 CSLN 300 (375)
T ss_pred cCCC
Confidence 9874
No 283
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.01 E-value=0.013 Score=64.27 Aligned_cols=112 Identities=21% Similarity=0.153 Sum_probs=89.7
Q ss_pred CCCCEEEEECCCcchHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
.++-+|||.=|+||+-++..|+. |..+|+|-|.++.++...+.+++.|+.. +.++..++|+..+.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-------------~ive~~~~DA~~lM 174 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-------------DIVEPHHSDANVLM 174 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-------------hhcccccchHHHHH
Confidence 56788999999999999999987 7789999999999999999999999887 88888888887654
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
-........||+|=..+.|. ...+|+++.+.++.||++......+.+
T Consensus 175 ~~~~~~~~~FDvIDLDPyGs-------~s~FLDsAvqav~~gGLL~vT~TD~aV 221 (525)
T KOG1253|consen 175 YEHPMVAKFFDVIDLDPYGS-------PSPFLDSAVQAVRDGGLLCVTCTDMAV 221 (525)
T ss_pred HhccccccccceEecCCCCC-------ccHHHHHHHHHhhcCCEEEEEecchHh
Confidence 22112247899998766554 356888888889999999866554443
No 284
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.96 E-value=0.052 Score=52.87 Aligned_cols=111 Identities=25% Similarity=0.306 Sum_probs=70.1
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHc-CC-CeEEEEeCCHHHHH------HHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQA-GA-SRVIAVEASEKMAA------VATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga-~~V~aVD~S~~~~~------~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
...+.+|.+|+|+-.|.|.++..++.+ |+ ..||+.=..+...- ..+...++..+ .+++
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~--------------aN~e 108 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY--------------ANVE 108 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh--------------hhhh
Confidence 346788999999999999999999887 54 47888654433110 11111111222 4555
Q ss_pred EEEccccccccccccCCCcccEEEEec----ccccccChhhHHHHHHHHhhcccCCcEEEee
Q 006731 364 VVQGMVEELGESMQIQPHSVDVLVSEW----MGYCLLYESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~~~~~DvIvse~----mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
++-.....+. ++++.|++.... |..-..+......+..++.+.|||||+++.-
T Consensus 109 ~~~~~~~A~~-----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 109 VIGKPLVALG-----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred hhCCcccccC-----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 5655555554 346677776532 2222334455678889999999999998843
No 285
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.91 E-value=0.11 Score=52.97 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=64.0
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
+...||++|+|+|.-++.+|..+...|.--|....+. ....+...|+.. .+..+..+.+..-+........
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~-~L~~~~~~~~~~--------l~~~g~~v~v~~L~Wg~~~~~~ 156 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE-NLKFNRDKNNIA--------LNQLGGSVIVAILVWGNALDVS 156 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH-HHHHhhhhhhhh--------hhhcCCceeEEEEecCCcccHh
Confidence 4678999999999999999886544888877766544 444443333321 1111234544443333322111
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..++..+|+|++.-. ...++...-++..+..+|..+|+++
T Consensus 157 ~~~~~~~DlilasDv---vy~~~~~e~Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 157 FRLPNPFDLILASDV---VYEEESFEGLVKTLAFLLAKDGTIF 196 (248)
T ss_pred hccCCcccEEEEeee---eecCCcchhHHHHHHHHHhcCCeEE
Confidence 112122999997543 2334455566677777888888444
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.88 E-value=0.11 Score=56.66 Aligned_cols=46 Identities=30% Similarity=0.497 Sum_probs=38.0
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~ 339 (633)
.+.++.+||.+|||+ |.++..+|++ |+.+|++++.++...+.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 456789999999998 8888888887 776799999999888777654
No 287
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=0.11 Score=55.49 Aligned_cols=101 Identities=21% Similarity=0.195 Sum_probs=79.4
Q ss_pred CCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
..+|||.=+|||+=++.+|.. +..+|+.-|+||.+++.++++++.|.. ....++..|...+-..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--------------~~~~v~n~DAN~lm~~- 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--------------EDAEVINKDANALLHE- 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--------------ccceeecchHHHHHHh-
Confidence 789999999999998888876 555999999999999999999999843 4566777787766521
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
. ...||+|=..++|. +.-++++..+.++.||++..+.
T Consensus 118 -~-~~~fd~IDiDPFGS-------PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 118 -L-HRAFDVIDIDPFGS-------PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -c-CCCccEEecCCCCC-------CchHHHHHHHHhhcCCEEEEEe
Confidence 1 37899998777654 2347778888888899887543
No 288
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.75 E-value=0.074 Score=57.55 Aligned_cols=46 Identities=37% Similarity=0.539 Sum_probs=36.2
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
..+.++.+||-.|+|. |.++..+|++ |+++|++++.++...+.|++
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3466789999999886 7777777776 88789999999987766654
No 289
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.74 E-value=0.066 Score=55.82 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=52.8
Q ss_pred EEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccC
Q 006731 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~ 379 (633)
+|+|+-||.|.+++-+.++|+..|+++|+++.+++..+.+.. . .++.+|+.++.... +
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~------------------~--~~~~~Di~~~~~~~-~- 59 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP------------------N--KLIEGDITKIDEKD-F- 59 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC------------------C--CCccCccccCchhh-c-
Confidence 699999999999999999999889999999988866655431 1 15678888876211 1
Q ss_pred CCcccEEEEec
Q 006731 380 PHSVDVLVSEW 390 (633)
Q Consensus 380 ~~~~DvIvse~ 390 (633)
...+|+|+..+
T Consensus 60 ~~~~D~l~~gp 70 (275)
T cd00315 60 IPDIDLLTGGF 70 (275)
T ss_pred CCCCCEEEeCC
Confidence 35799999753
No 290
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.58 E-value=0.21 Score=54.99 Aligned_cols=95 Identities=24% Similarity=0.320 Sum_probs=59.6
Q ss_pred HHHHhCC-CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEE
Q 006731 287 QAILENP-SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKME 363 (633)
Q Consensus 287 ~aI~~~~-~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~ 363 (633)
+.|.+.. ...+|++|+-+|+|. |.....++++ |+ +|+++|.++.....|+. .|. +
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~-----------------~ 247 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY-----------------E 247 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC-----------------E
Confidence 3444432 246899999999998 7776666665 88 89999999876655543 333 1
Q ss_pred EEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 364 VVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 364 vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
++ +.++. + ..+|+||.- .| ....+-.+..+.+|+||+++-
T Consensus 248 ~~--~~~e~-----v--~~aDVVI~a-tG-------~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 248 VM--TMEEA-----V--KEGDIFVTT-TG-------NKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred Ec--cHHHH-----H--cCCCEEEEC-CC-------CHHHHHHHHHhcCCCCcEEEE
Confidence 11 12222 2 358999852 11 122233344788999999873
No 291
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.48 E-value=0.09 Score=56.55 Aligned_cols=45 Identities=33% Similarity=0.550 Sum_probs=36.0
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |.++..+|++ |+++|++++.++...+.+++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 457789999999876 7777777776 88779999999887766653
No 292
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.37 E-value=0.14 Score=53.19 Aligned_cols=44 Identities=36% Similarity=0.516 Sum_probs=34.6
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
..++.+||-+|+|+ |.++..+|++ |+++|++++.++.-.+.|++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 34789999999986 7777777776 88779999998877666654
No 293
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.22 E-value=0.16 Score=52.64 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=81.7
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHh--CCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKD--NDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~--ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
....++||-||-|.|......+++ -...+.-+|+....++..++.+.. .|+ ...+|.+.-||-..
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy------------~~~~v~l~iGDG~~ 186 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY------------EGKKVKLLIGDGFL 186 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc------------CCCceEEEeccHHH
Confidence 456799999999999887777777 346789999999999988887753 333 33789999998876
Q ss_pred cccccccCCCcccEEEEecccccccChhh-HHHHHHHHhhcccCCcEEEeec
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCLLYESM-LSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L~~e~~-l~~vl~a~~r~LkpgG~lip~~ 422 (633)
+-+. ...++||+|+.+.-.-....+.. ...+..-+.+.||+||.++...
T Consensus 187 fl~~--~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 187 FLED--LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred HHHH--hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 6432 33589999997642222222222 3456667788999999998543
No 294
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.82 E-value=0.2 Score=52.84 Aligned_cols=83 Identities=23% Similarity=0.172 Sum_probs=53.9
Q ss_pred CCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 297 ~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
++++||-+|||. |.++..+|++ |++.|+++|.++..++.|... .. + +..+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~-------------------i--~~~~~~- 197 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV-------------------L--DPEKDP- 197 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc-------------------c--Chhhcc-
Confidence 577899999986 8888887776 887788899887665544321 10 1 000001
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
...+|+|+- ..|. ...+....+.|+++|+++
T Consensus 198 -----~~g~Dvvid-~~G~--------~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 198 -----RRDYRAIYD-ASGD--------PSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred -----CCCCCEEEE-CCCC--------HHHHHHHHHhhhcCcEEE
Confidence 246899883 3332 224455667899999988
No 295
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.78 E-value=0.39 Score=50.15 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=68.3
Q ss_pred HHHhCCCCCCCCEEEEECCCcchHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGILSLFAAQAG--ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV 365 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG--a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi 365 (633)
.+...+...++...+|.--|.|..|..+.... .++++|+|.++.+++.|++++...+ ++++++
T Consensus 14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---------------~r~~~v 78 (314)
T COG0275 14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---------------GRVTLV 78 (314)
T ss_pred HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---------------CcEEEE
Confidence 34445567788999999999999888888774 3689999999999999999988654 789999
Q ss_pred Eccccccccccc-cCCCcccEEEEe
Q 006731 366 QGMVEELGESMQ-IQPHSVDVLVSE 389 (633)
Q Consensus 366 ~gd~e~l~~~~~-l~~~~~DvIvse 389 (633)
++...++..... ...+++|-|+..
T Consensus 79 ~~~F~~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 79 HGNFANLAEALKELGIGKVDGILLD 103 (314)
T ss_pred eCcHHHHHHHHHhcCCCceeEEEEe
Confidence 999887753211 224688888865
No 296
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.38 E-value=0.21 Score=53.06 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=34.5
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-+|+|. |.++..+|++ |+++|++++.++...+.+++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 456789999999875 6676667766 88669999999877766654
No 297
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.33 E-value=0.26 Score=52.87 Aligned_cols=92 Identities=16% Similarity=0.286 Sum_probs=55.5
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeC---CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEA---SEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~---S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
..++.+||-+|+|. |.++..+|++ |+ +|++++. ++.-.+.|+ +.|. +.+.....+.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga--------------~~v~~~~~~~ 230 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGA--------------TYVNSSKTPV 230 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCC--------------EEecCCccch
Confidence 35788999999986 7787777776 77 7999987 555554444 3333 1111101111
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.+.. . ...+|+|+- ..|. ...+....+.|++||.++
T Consensus 231 ~~~~----~-~~~~d~vid-~~g~--------~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 231 AEVK----L-VGEFDLIIE-ATGV--------PPLAFEALPALAPNGVVI 266 (355)
T ss_pred hhhh----h-cCCCCEEEE-CcCC--------HHHHHHHHHHccCCcEEE
Confidence 1111 1 246999984 2221 124556668899999887
No 298
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.14 E-value=0.58 Score=52.87 Aligned_cols=118 Identities=18% Similarity=0.084 Sum_probs=75.0
Q ss_pred HHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-C----CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 006731 286 RQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-G----ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 286 ~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-G----a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~ 360 (633)
.+.|.+.+.+.+..+|+|.-||+|.+-..+++. + ...++|.|+++..++.|+.++--+|.. .
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~-------------~ 241 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE-------------G 241 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC-------------c
Confidence 344444444456679999999999766655554 2 246899999999999999999888874 2
Q ss_pred cEEEEEcccccccccc-ccCCCcccEEEEecccccccC----------------------hhhHHHHHHHHhhcccCCc
Q 006731 361 KMEVVQGMVEELGESM-QIQPHSVDVLVSEWMGYCLLY----------------------ESMLSSVLFARDQWLKPGG 416 (633)
Q Consensus 361 ~I~vi~gd~e~l~~~~-~l~~~~~DvIvse~mg~~L~~----------------------e~~l~~vl~a~~r~LkpgG 416 (633)
.+...+++...-+... ....++||.|++++..+.-.+ ......++..+...|+|||
T Consensus 242 ~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g 320 (489)
T COG0286 242 DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGG 320 (489)
T ss_pred cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCc
Confidence 3455555544333110 012367999998753220000 1111456777788888876
No 299
>PLN02740 Alcohol dehydrogenase-like
Probab=93.10 E-value=0.66 Score=50.41 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=36.9
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
....+|.+||-+|+|. |.++..+|++ |+++|++++.++..++.|++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3567899999999986 7777777776 77789999999887766654
No 300
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.00 E-value=0.42 Score=51.14 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCCCCEEEEECCCc-chHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQ--AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~--aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
..+|.+||-+|||. |+++..+++ .|+.+|+++|.++.-++.|++ .+ ....+ .+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~----------------~~~~~----~~ 216 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD----------------ETYLI----DD 216 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC----------------ceeeh----hh
Confidence 45789999999987 777766665 366789999999877766653 11 11111 11
Q ss_pred cccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+. ....+|+|+- ..|. ...+..+....++|++||+++
T Consensus 217 ~~-----~~~g~d~viD-~~G~-----~~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 217 IP-----EDLAVDHAFE-CVGG-----RGSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred hh-----hccCCcEEEE-CCCC-----CccHHHHHHHHHhCcCCcEEE
Confidence 22 1124899983 3331 012334556667999999988
No 301
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.81 E-value=0.31 Score=54.96 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=34.7
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
..++.+||-+|+|. |+.+..+++. |+ .|+++|.++..++.++.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 34678999999998 7888777776 87 69999999987666554
No 302
>PLN02827 Alcohol dehydrogenase-like
Probab=92.78 E-value=0.51 Score=51.33 Aligned_cols=45 Identities=33% Similarity=0.460 Sum_probs=35.2
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...+|.+||-.|+|+ |.++..+|++ |++.|++++.++...+.|++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 457899999999886 7777777776 88789999988877655543
No 303
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.60 E-value=0.31 Score=52.02 Aligned_cols=45 Identities=36% Similarity=0.494 Sum_probs=34.5
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|+ |.++..+|++ |++.|++++.++...+.+++
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 203 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS 203 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 356789999999886 7777777776 88678999999877665543
No 304
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.20 E-value=0.43 Score=46.97 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCCEEEEECCCcchHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
+.-.+.|||||-|.|.+.++-... .-+.|+|+-....+..++++.+.+..+ -.....++.+++.+....
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~-------a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTS-------AEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccc-------cccccccceeeeccchhh
Confidence 445799999999999999988854 578899999988888888887654321 111135677777665543
No 305
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.13 E-value=0.28 Score=51.60 Aligned_cols=68 Identities=31% Similarity=0.311 Sum_probs=53.2
Q ss_pred EEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccC
Q 006731 300 VVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQ 379 (633)
Q Consensus 300 ~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~ 379 (633)
+|+|+-||.|.+++-+.++|...|.|+|+++.+.+.-+.+. . .+..+|+.++... .++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------------------~--~~~~~Di~~~~~~-~l~ 59 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------------------P--EVICGDITEIDPS-DLP 59 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------------------T--EEEESHGGGCHHH-HHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------------------c--ccccccccccccc-ccc
Confidence 69999999999999999999989999999999886666554 3 6788999988633 244
Q ss_pred CCcccEEEEec
Q 006731 380 PHSVDVLVSEW 390 (633)
Q Consensus 380 ~~~~DvIvse~ 390 (633)
. .+|+++..+
T Consensus 60 ~-~~D~l~ggp 69 (335)
T PF00145_consen 60 K-DVDLLIGGP 69 (335)
T ss_dssp H-T-SEEEEE-
T ss_pred c-cceEEEecc
Confidence 3 699999753
No 306
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.80 E-value=1.5 Score=43.66 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=67.6
Q ss_pred HHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHH-cC--CCeEEEEeCCHHHHHHHHHHHHhCC---CCC---------
Q 006731 283 DSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQ-AG--ASRVIAVEASEKMAAVATQIAKDND---FWW--------- 347 (633)
Q Consensus 283 ~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~-aG--a~~V~aVD~S~~~~~~A~~~~~~ng---l~~--------- 347 (633)
+.|.+++... .-..+-++.|-.||.|.|.-.+.- ++ .+.|+|-|+++.+++.|++++.--. +..
T Consensus 38 Ei~qR~l~~l-~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~ 116 (246)
T PF11599_consen 38 EIFQRALHYL-EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELY 116 (246)
T ss_dssp HHHHHHHCTS-SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHH
Confidence 3444544322 223457899999999975444433 33 3689999999999999999764221 100
Q ss_pred ---CCC-------CC-------CCCCCCCCcEEEEEcccccccccccc-CCCcccEEEEec-ccccccChh-----hHHH
Q 006731 348 ---DRP-------QS-------EGNINNAGKMEVVQGMVEELGESMQI-QPHSVDVLVSEW-MGYCLLYES-----MLSS 403 (633)
Q Consensus 348 ---~~~-------~~-------~~~~~~~~~I~vi~gd~e~l~~~~~l-~~~~~DvIvse~-mg~~L~~e~-----~l~~ 403 (633)
+.+ .+ ...+ ......+.+.|+.+......+ .....||||... -|....|++ -...
T Consensus 117 e~~~kps~~eAl~sA~RL~~~l~~~g-~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ 195 (246)
T PF11599_consen 117 EQYGKPSHAEALESADRLRERLAAEG-GDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQ 195 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHTT-SS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhcC-CCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHH
Confidence 000 00 0000 112366778888773211001 124579999873 233334443 3678
Q ss_pred HHHHHhhcccCCcEEE
Q 006731 404 VLFARDQWLKPGGAIL 419 (633)
Q Consensus 404 vl~a~~r~LkpgG~li 419 (633)
++..+...| |+..+|
T Consensus 196 ml~~l~~vL-p~~sVV 210 (246)
T PF11599_consen 196 MLNSLAPVL-PERSVV 210 (246)
T ss_dssp HHHHHHCCS--TT-EE
T ss_pred HHHHHHhhC-CCCcEE
Confidence 999999999 554444
No 307
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.78 E-value=0.22 Score=49.72 Aligned_cols=101 Identities=22% Similarity=0.327 Sum_probs=67.4
Q ss_pred CCCCC-CEEEEECCCcchHHHHHHHc--------CC--CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 294 SLMKG-AVVMDIGCGTGILSLFAAQA--------GA--SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 294 ~~~~~-~~VLDVGcGtG~lsl~~a~a--------Ga--~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
.+++| ++|.|+.+-+|..|..+++. +. ++++|||+-+.+ .+ ..|
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI--------------~GV 91 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI--------------EGV 91 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc--------------Cce
Confidence 44555 78999999999998888875 12 249999997632 22 557
Q ss_pred EEEEccccccccc----cccCCCcccEEEEec----ccccccChhh----HHHHHHHHhhcccCCcEEE
Q 006731 363 EVVQGMVEELGES----MQIQPHSVDVLVSEW----MGYCLLYESM----LSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 363 ~vi~gd~e~l~~~----~~l~~~~~DvIvse~----mg~~L~~e~~----l~~vl~a~~r~LkpgG~li 419 (633)
.-+++|+....-. ..+..++.|+|||.. .|-+-+.|-+ +-+.|.-..++|||||.++
T Consensus 92 ~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 92 IQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred EEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 7789999864311 114567999999973 1211112222 3345555688999999998
No 308
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.71 E-value=0.44 Score=50.56 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=41.7
Q ss_pred CCCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHH
Q 006731 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAK 341 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~ 341 (633)
.....+|.+|.-+|||. |+-++.-|+. ||.+++|||+++.-++.|++.-.
T Consensus 180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA 231 (366)
T COG1062 180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA 231 (366)
T ss_pred cccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC
Confidence 44678899999999996 7777777775 99999999999999988887543
No 309
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.69 E-value=0.3 Score=51.62 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=57.5
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
...++..++|.--|.|..|..+.+. +..+|+|+|.++.+++.|++++... . +++.+++++..++
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~-------------~r~~~~~~~F~~l 81 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--D-------------DRFIFIHGNFSNL 81 (310)
T ss_dssp T--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--C-------------TTEEEEES-GGGH
T ss_pred CcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--c-------------ceEEEEeccHHHH
Confidence 4677889999999999999988876 4479999999999998888776543 2 8999999999887
Q ss_pred ccccc-c-CCCcccEEEEe
Q 006731 373 GESMQ-I-QPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~~-l-~~~~~DvIvse 389 (633)
..... . ...++|.|+..
T Consensus 82 ~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFD 100 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE
T ss_pred HHHHHHccCCCccCEEEEc
Confidence 63321 1 23589999865
No 310
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.33 E-value=1.1 Score=43.54 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=64.6
Q ss_pred EEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCcEEEEEcccc
Q 006731 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (633)
Q Consensus 300 ~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~-------ngl~~~~~~~~~~~~~~~~I~vi~gd~e 370 (633)
+|.-||+|+ | .++..++.+|. +|+.+|.++..++.+++.++. .+.-. .......-.++++ ..+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~----~~~~~~~~~~i~~-~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLS----QEEADAALARISF-TTDLE 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTT----HHHHHHHHHTEEE-ESSGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccch----hhhhhhhhhhccc-ccCHH
Confidence 477899998 5 57888888898 999999999999888877654 11100 0000000134442 33443
Q ss_pred ccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 371 ~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
++ ...|+||=.. ......-..++..+.+++.|+.++.-++.++.+
T Consensus 75 ~~--------~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i 119 (180)
T PF02737_consen 75 EA--------VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSLSI 119 (180)
T ss_dssp GG--------CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H
T ss_pred HH--------hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCCCH
Confidence 32 2689988422 222344568999999999999888866555443
No 311
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.31 E-value=1.3 Score=48.81 Aligned_cols=38 Identities=37% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMA 333 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~ 333 (633)
...|++|+-+|+|. |......++. |+ +|+++|.++...
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~ 231 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRA 231 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhH
Confidence 46899999999998 7655555555 77 899999998643
No 312
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=91.17 E-value=0.11 Score=33.86 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=23.0
Q ss_pred CceeecCCCCCCCHHHHHHHhhhhcC
Q 006731 46 GFLCLFCDAGYSSCDTLFEHCRLSHC 71 (633)
Q Consensus 46 ~~~CLFC~~~~~~~~~~l~Hm~~~H~ 71 (633)
+..|..|+..|++...+.+||+..|+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 45899999999999999999987664
No 313
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.10 E-value=1.6 Score=47.19 Aligned_cols=45 Identities=29% Similarity=0.488 Sum_probs=35.4
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |.++..+|++ |+++|++++.++...+.+++
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 456789999999875 6777777776 88789999999987766653
No 314
>PRK11524 putative methyltransferase; Provisional
Probab=91.09 E-value=0.46 Score=49.71 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=43.1
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ 342 (633)
..+|.+|||-=||+|..++.|.+.|- +.+|+|+++..++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 46899999999999999999999986 999999999999999999863
No 315
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.07 E-value=0.73 Score=48.28 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=70.4
Q ss_pred CCCEEEEECCCc-chHHH-HHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 297 KGAVVMDIGCGT-GILSL-FAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 297 ~~~~VLDVGcGt-G~lsl-~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
++.+|.-||.|. |.-+. .+...|| .|+-+|.|..-++.....+. .++..+......+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~------------------~rv~~~~st~~~ie- 226 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFG------------------GRVHTLYSTPSNIE- 226 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhC------------------ceeEEEEcCHHHHH-
Confidence 446778888886 55443 3344477 99999999887765555432 67888888888877
Q ss_pred ccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 375 SMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..-.+.|+||.-.+ ......+.-+.+.+.+.+|||+.++
T Consensus 227 ---e~v~~aDlvIgaVL---IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 227 ---EAVKKADLVIGAVL---IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ---HHhhhccEEEEEEE---ecCCCCceehhHHHHHhcCCCcEEE
Confidence 34578999997543 3455566677888899999999987
No 316
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.04 E-value=1.2 Score=48.63 Aligned_cols=21 Identities=43% Similarity=0.501 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhcccCCcEEEe
Q 006731 400 MLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 400 ~l~~vl~a~~r~LkpgG~lip 420 (633)
++..+|.+|.+=|.|||.++.
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEE
Confidence 366789999999999999994
No 317
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.04 E-value=2.1 Score=43.89 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc----C--CCeEEEEeCCHH---------------------
Q 006731 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA----G--ASRVIAVEASEK--------------------- 331 (633)
Q Consensus 279 ~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a----G--a~~V~aVD~S~~--------------------- 331 (633)
..|...+..++.......-...|++.||-.|..+++++.. + .++|++.|.=..
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 5677778888877654444578999999999877665432 3 357888873221
Q ss_pred -----HHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHH
Q 006731 332 -----MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF 406 (633)
Q Consensus 332 -----~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~ 406 (633)
..+..++++...|+ ..+++.++.|.+.+.... .|.+++-++-.. . =++++ ...+|.
T Consensus 136 ~~~~~s~e~V~~n~~~~gl------------~~~~v~~vkG~F~dTLp~--~p~~~IAll~lD---~-DlYes-T~~aLe 196 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGL------------LDDNVRFVKGWFPDTLPD--APIERIALLHLD---C-DLYES-TKDALE 196 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTT------------SSTTEEEEES-HHHHCCC---TT--EEEEEE-------SHHH-HHHHHH
T ss_pred cccccCHHHHHHHHHHcCC------------CcccEEEECCcchhhhcc--CCCccEEEEEEe---c-cchHH-HHHHHH
Confidence 12222333333332 237899999999775311 233444333321 1 22333 356788
Q ss_pred HHhhcccCCcEEEeecc
Q 006731 407 ARDQWLKPGGAILPDTA 423 (633)
Q Consensus 407 a~~r~LkpgG~lip~~~ 423 (633)
.++..|.|||+|+++..
T Consensus 197 ~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 197 FLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp HHGGGEEEEEEEEESST
T ss_pred HHHhhcCCCeEEEEeCC
Confidence 88999999999997653
No 318
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.70 E-value=0.72 Score=41.53 Aligned_cols=84 Identities=27% Similarity=0.453 Sum_probs=52.3
Q ss_pred CcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc-c-cCCCcc
Q 006731 307 GTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM-Q-IQPHSV 383 (633)
Q Consensus 307 GtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~-~-l~~~~~ 383 (633)
|.|+++..+|++ | .+|++++.++.-.+.+++ .|. . .++..+-.++.... . .+...+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga--------------~--~~~~~~~~~~~~~i~~~~~~~~~ 59 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGA--------------D--HVIDYSDDDFVEQIRELTGGRGV 59 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTE--------------S--EEEETTTSSHHHHHHHHTTTSSE
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hcc--------------c--ccccccccccccccccccccccc
Confidence 468888888887 7 699999999987766664 332 1 22332222111000 0 123589
Q ss_pred cEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 384 DVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 384 DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
|+|+- ..|. ...+.....+|+|+|.++.
T Consensus 60 d~vid-~~g~--------~~~~~~~~~~l~~~G~~v~ 87 (130)
T PF00107_consen 60 DVVID-CVGS--------GDTLQEAIKLLRPGGRIVV 87 (130)
T ss_dssp EEEEE-SSSS--------HHHHHHHHHHEEEEEEEEE
T ss_pred eEEEE-ecCc--------HHHHHHHHHHhccCCEEEE
Confidence 99983 2221 3456666788999999984
No 319
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=90.41 E-value=0.43 Score=42.28 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.4
Q ss_pred CCCEEEEECCCcchHHHHHHHcCCCeEEEEeCC
Q 006731 297 KGAVVMDIGCGTGILSLFAAQAGASRVIAVEAS 329 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S 329 (633)
+.....|||||.|+|.-.+.+.|. +=+|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456799999999999999999988 67788863
No 320
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.38 E-value=0.71 Score=49.48 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=35.5
Q ss_pred CCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHH
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIA 340 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~ 340 (633)
.-..|.|+|+|.|.||.+++-. |. .|+|||-|....+.|++.-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHHHHHHHH
Confidence 3478999999999999999876 55 8999999988776666543
No 321
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.32 E-value=1.4 Score=47.54 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=28.2
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEK 331 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~ 331 (633)
..++.+||-.|+|. |.++..+|++ |+ +|++++.++.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~ 218 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSN 218 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 35788999999986 7777777776 77 7888887764
No 322
>PRK13699 putative methylase; Provisional
Probab=90.29 E-value=1.1 Score=45.40 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=42.0
Q ss_pred CCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKD 342 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ 342 (633)
.+|..|||-=||+|.....+.+.|. +++|+|+++...+.|.++++.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 5789999999999999999999886 899999999999999888865
No 323
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.23 E-value=1.6 Score=48.33 Aligned_cols=85 Identities=29% Similarity=0.372 Sum_probs=52.3
Q ss_pred CCCCCEEEEECCCc-chHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQ-AGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~-aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
...|++|+-+|+|. |......++ .|+ +|+.+|.++.....|.. .|. .+. ++++.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~-----------------~v~--~l~ea 264 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF-----------------RVM--TMEEA 264 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC-----------------Eec--CHHHH
Confidence 35899999999997 654444444 488 89999999865433321 232 111 23332
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHHH-HHhhcccCCcEEE
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLF-ARDQWLKPGGAIL 419 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~-a~~r~LkpgG~li 419 (633)
. ..+|+||.-. | . ..++. .....+|+|++++
T Consensus 265 l-------~~aDVVI~aT-G-------~-~~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 265 A-------ELGDIFVTAT-G-------N-KDVITAEHMEAMKDGAILA 296 (425)
T ss_pred H-------hCCCEEEECC-C-------C-HHHHHHHHHhcCCCCCEEE
Confidence 2 3689998632 1 1 22333 5667899999887
No 324
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.22 E-value=0.48 Score=46.83 Aligned_cols=43 Identities=28% Similarity=0.450 Sum_probs=35.7
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~ 338 (633)
..+|..|||.=||+|..+..+.+.|- +.+|+|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 35789999999999999999999986 89999999999988864
No 325
>PLN02494 adenosylhomocysteinase
Probab=90.15 E-value=1.1 Score=50.14 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=56.8
Q ss_pred HHHHHhCCC-CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcE
Q 006731 286 RQAILENPS-LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKM 362 (633)
Q Consensus 286 ~~aI~~~~~-~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I 362 (633)
.+.|.+... ...|++|+-+|+|. |......++. |+ +|+++|.++.....|. ..|+
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~----------------- 298 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGY----------------- 298 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCC-----------------
Confidence 444554433 36799999999997 6554444444 78 8999999986432332 2233
Q ss_pred EEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 363 EVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 363 ~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.++ ++++.. ...|+||.-. +. ...+.......+|+||+++
T Consensus 299 ~vv--~leEal-------~~ADVVI~tT-Gt-------~~vI~~e~L~~MK~GAiLi 338 (477)
T PLN02494 299 QVL--TLEDVV-------SEADIFVTTT-GN-------KDIIMVDHMRKMKNNAIVC 338 (477)
T ss_pred eec--cHHHHH-------hhCCEEEECC-CC-------ccchHHHHHhcCCCCCEEE
Confidence 122 233322 3689998621 11 1112345567899999998
No 326
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.91 E-value=0.49 Score=48.63 Aligned_cols=85 Identities=14% Similarity=0.283 Sum_probs=64.6
Q ss_pred HHhCCCCCCCCEEEEECCCcchHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 289 ILENPSLMKGAVVMDIGCGTGILSLFAAQAG-ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 289 I~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG-a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
+........|+.|+-+| -.-+.|+.+|-.| +++|..||+.+..+..-.+.+...|+ ++|+.+.-
T Consensus 144 lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~--------------~~ie~~~~ 208 (354)
T COG1568 144 LMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY--------------NNIEAFVF 208 (354)
T ss_pred eeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc--------------cchhheee
Confidence 33334567899999999 4467777777665 68999999999999999999999998 77888888
Q ss_pred cccccccccccCCCcccEEEEec
Q 006731 368 MVEELGESMQIQPHSVDVLVSEW 390 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~ 390 (633)
|+..--. ..+ .++||+++..+
T Consensus 209 Dlr~plp-e~~-~~kFDvfiTDP 229 (354)
T COG1568 209 DLRNPLP-EDL-KRKFDVFITDP 229 (354)
T ss_pred hhcccCh-HHH-HhhCCeeecCc
Confidence 8875320 001 37899999765
No 327
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=89.86 E-value=2.3 Score=44.56 Aligned_cols=99 Identities=25% Similarity=0.325 Sum_probs=59.3
Q ss_pred CCCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
...+.++.+||..|+|. |.++..+|+. |+ +|++++.++...+.+++ .|.. . ++...-
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~--------------~--~~~~~~ 218 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD--------------E--VLNSLD 218 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC--------------E--EEcCCC
Confidence 33466788999998874 7777777776 76 69999999987766644 2331 1 111111
Q ss_pred cccccc-cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 370 EELGES-MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 370 e~l~~~-~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
...... ...+...+|+++.. .+ . ...+....+.|+++|.++-
T Consensus 219 ~~~~~~~~~~~~~~~D~vid~-~g----~----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 219 DSPKDKKAAGLGGGFDVIFDF-VG----T----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred cCHHHHHHHhcCCCceEEEEC-CC----C----HHHHHHHHHHhhcCCEEEE
Confidence 011000 00234679998852 11 1 2345566789999999883
No 328
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.52 E-value=0.64 Score=50.97 Aligned_cols=104 Identities=24% Similarity=0.237 Sum_probs=61.0
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc---c
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG---M 368 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g---d 368 (633)
...++.+||-.|+|. |.++..+|++ |++.|+++|.++.-.+.|++. |. . .+... +
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga--------------~--~v~~~~~~~ 241 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GC--------------E--TVDLSKDAT 241 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CC--------------e--EEecCCccc
Confidence 456788998899986 7777777776 887788889888766666542 32 2 12211 1
Q ss_pred ccc-cccccccCCCcccEEEEecccccc------cChhhHHHHHHHHhhcccCCcEEEe
Q 006731 369 VEE-LGESMQIQPHSVDVLVSEWMGYCL------LYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 369 ~e~-l~~~~~l~~~~~DvIvse~mg~~L------~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
..+ +.. ......+|+++- ..|.-- ..+......+....+++++||.++.
T Consensus 242 ~~~~v~~--~~~~~g~Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 242 LPEQIEQ--ILGEPEVDCAVD-CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred HHHHHHH--HcCCCCCcEEEE-CCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 111 110 012346999984 333210 0011122456666789999999983
No 329
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.48 E-value=0.97 Score=48.76 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=82.0
Q ss_pred hhhcCCCCchhhHHhhcChhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 006731 261 SYFGSYSSFGIHREMISDKVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (633)
Q Consensus 261 ~yf~~Y~~~~~h~~mL~D~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~ 339 (633)
.||.+++..-+.+.+++ ...-|.+...+.++...+|+|.|.|.+..++|.. |+++-+|+++.......|...
T Consensus 163 ~hYk~~ss~~YGE~~~~-------ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~ 235 (419)
T KOG3924|consen 163 QHYKSFSSETYGETQLE-------QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELN 235 (419)
T ss_pred HhhccccccchhhhhHH-------HHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHH
Confidence 35556555555555433 2333444456788999999999999988887765 667888888876555444433
Q ss_pred HH-------hCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcc
Q 006731 340 AK-------DNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL 412 (633)
Q Consensus 340 ~~-------~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~L 412 (633)
.. ..|. ....+..++++..+-.....+ ....++|+++.+ ...+. +..=+..+..-+
T Consensus 236 ~~~~kk~~k~fGk------------~~~~~~~i~gsf~~~~~v~eI-~~eatvi~vNN~---~Fdp~-L~lr~~eil~~c 298 (419)
T KOG3924|consen 236 KEEFKKLMKHFGK------------KPNKIETIHGSFLDPKRVTEI-QTEATVIFVNNV---AFDPE-LKLRSKEILQKC 298 (419)
T ss_pred HHHHHHHHHHhCC------------CcCceeecccccCCHHHHHHH-hhcceEEEEecc---cCCHH-HHHhhHHHHhhC
Confidence 22 2222 126788888877653311112 357899997653 32322 222223566677
Q ss_pred cCCcEEE
Q 006731 413 KPGGAIL 419 (633)
Q Consensus 413 kpgG~li 419 (633)
++|.+++
T Consensus 299 k~gtrIi 305 (419)
T KOG3924|consen 299 KDGTRII 305 (419)
T ss_pred CCcceEe
Confidence 8888887
No 330
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=89.41 E-value=2.8 Score=45.05 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=57.2
Q ss_pred CCCCCEEEEECCCcchHHHHHHHc----------CC-------CeEEEEeCCH-HHHHHHHHHHHhC-CCCCCCCCCCCC
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQA----------GA-------SRVIAVEASE-KMAAVATQIAKDN-DFWWDRPQSEGN 355 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~a----------Ga-------~~V~aVD~S~-~~~~~A~~~~~~n-gl~~~~~~~~~~ 355 (633)
..+.-+|+|+||.+|.-++.+... .. -+|+--|.-. ..-...+..-... .+.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~--------- 84 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK--------- 84 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH---------
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC---------
Confidence 345579999999999888877653 00 1566666432 1111222111110 000
Q ss_pred CCCCCcEEEEEccccccccccccCCCcccEEEEe----ccccc---cc-----------------------------Chh
Q 006731 356 INNAGKMEVVQGMVEELGESMQIQPHSVDVLVSE----WMGYC---LL-----------------------------YES 399 (633)
Q Consensus 356 ~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse----~mg~~---L~-----------------------------~e~ 399 (633)
+...--+.-+.|....-- +|.+++|+++|. |+... +. +..
T Consensus 85 ~~~~~f~~gvpgSFy~rL----fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~ 160 (334)
T PF03492_consen 85 KFRNYFVSGVPGSFYGRL----FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQK 160 (334)
T ss_dssp HTTSEEEEEEES-TTS------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHH
T ss_pred CCceEEEEecCchhhhcc----CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHH
Confidence 000011333455555444 788999999985 32211 00 123
Q ss_pred hHHHHHHHHhhcccCCcEEEe
Q 006731 400 MLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 400 ~l~~vl~a~~r~LkpgG~lip 420 (633)
++..+|.+|.+=|+|||+++.
T Consensus 161 D~~~FL~~Ra~ELv~GG~mvl 181 (334)
T PF03492_consen 161 DFSSFLKARAEELVPGGRMVL 181 (334)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHhhheeccCcEEEE
Confidence 466799999999999999994
No 331
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.40 E-value=0.73 Score=48.36 Aligned_cols=48 Identities=29% Similarity=0.439 Sum_probs=40.5
Q ss_pred CCCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHH
Q 006731 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQI 339 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~ 339 (633)
.....+|.+|.-+|+|. |+...+-|++ ||++++|||+++.-.+.|++.
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 34678999999999997 7777777776 999999999999988787764
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.22 E-value=1.4 Score=44.20 Aligned_cols=44 Identities=34% Similarity=0.556 Sum_probs=32.8
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||..|+|+ |.....++++ | .+|++++.++...+.++.
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH
Confidence 346789999999996 6666666665 6 489999999876655543
No 333
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.22 E-value=0.63 Score=46.70 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=55.5
Q ss_pred CCCEEEEECCCcc-hHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhC-CCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 297 KGAVVMDIGCGTG-ILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDN-DFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 297 ~~~~VLDVGcGtG-~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~n-gl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
++.++||||.|.- +..+.=.+. |. +.+|.|+++..++.|+.++..| ++. ..|++....=.+-.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~-------------~~I~lr~qk~~~~i 143 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLE-------------RAIRLRRQKDSDAI 143 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchh-------------hheeEEeccCcccc
Confidence 5678999999963 443332332 56 7899999999999999999998 776 66776654322211
Q ss_pred -cccccCCCcccEEEEecc
Q 006731 374 -ESMQIQPHSVDVLVSEWM 391 (633)
Q Consensus 374 -~~~~l~~~~~DvIvse~m 391 (633)
....--.+.||+..|++.
T Consensus 144 f~giig~nE~yd~tlCNPP 162 (292)
T COG3129 144 FNGIIGKNERYDATLCNPP 162 (292)
T ss_pred ccccccccceeeeEecCCC
Confidence 111012478999999975
No 334
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=89.00 E-value=0.24 Score=30.71 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=19.7
Q ss_pred eeecCCCCCCCHHHHHHHhhhhc
Q 006731 48 LCLFCDAGYSSCDTLFEHCRLSH 70 (633)
Q Consensus 48 ~CLFC~~~~~~~~~~l~Hm~~~H 70 (633)
.|-+|+..|++...+..||+..|
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCcCCCCcCCcHHHHHHHHHhhC
Confidence 68999999999999999999877
No 335
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.90 E-value=2.5 Score=45.16 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |.++..+|++ |+ +|++++.++..++.|++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 456789999999976 7777777776 77 79999999987766654
No 336
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=88.78 E-value=0.6 Score=36.02 Aligned_cols=50 Identities=30% Similarity=0.554 Sum_probs=38.3
Q ss_pred CceeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhcccccccccCCccCCHHHHHHHHHH
Q 006731 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHE 123 (633)
Q Consensus 46 ~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~~~~~C~~C~~~~~~~~~~~~Hm~~ 123 (633)
...|.||.+ .-+...++.|+.+.|..+-.. ..|+.|...+. ..+..||.-
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~-------------------------v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKN-------------------------VVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCC-------------------------ccCCCchhhhh--hHHHHHHHH
Confidence 468999999 567899999999999874211 26999987644 478889864
No 337
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.69 E-value=2.8 Score=44.51 Aligned_cols=44 Identities=27% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...+|.+||-.|+|. |.++..+|++ |+ +|++++.++.-.+.|++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 466789999999875 6666666666 77 79999999877655554
No 338
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=88.61 E-value=0.31 Score=30.33 Aligned_cols=21 Identities=33% Similarity=0.811 Sum_probs=19.0
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 006731 103 RCWICGLTCQSNQDLQNHLHE 123 (633)
Q Consensus 103 ~C~~C~~~~~~~~~~~~Hm~~ 123 (633)
+|..|++.|.....++.||+.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHhH
Confidence 599999999999999999963
No 339
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.41 E-value=0.68 Score=49.22 Aligned_cols=66 Identities=24% Similarity=0.249 Sum_probs=49.8
Q ss_pred EEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccccCC
Q 006731 301 VMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQIQP 380 (633)
Q Consensus 301 VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~l~~ 380 (633)
|+|+-||.|.+++-+.++|..-|.++|+++.+++..+.+.. + .++.+|+.++... .+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------------------~--~~~~~Di~~~~~~-~~-- 57 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------------------N--KVPFGDITKISPS-DI-- 57 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------------------C--CCCccChhhhhhh-hC--
Confidence 68999999999999999999778899999988766555431 2 4466888887521 12
Q ss_pred CcccEEEEe
Q 006731 381 HSVDVLVSE 389 (633)
Q Consensus 381 ~~~DvIvse 389 (633)
..+|+++..
T Consensus 58 ~~~dvl~gg 66 (315)
T TIGR00675 58 PDFDILLGG 66 (315)
T ss_pred CCcCEEEec
Confidence 358999865
No 340
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.00 E-value=2.6 Score=46.31 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEC-CCc-chHHHHHHHc---CCCeEEEEeCCHHHHHHHHHH
Q 006731 294 SLMKGAVVMDIG-CGT-GILSLFAAQA---GASRVIAVEASEKMAAVATQI 339 (633)
Q Consensus 294 ~~~~~~~VLDVG-cGt-G~lsl~~a~a---Ga~~V~aVD~S~~~~~~A~~~ 339 (633)
...++.+||-+| +|. |.++..+|++ |+.+|+++|.++..++.|++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 456788999997 464 7888878886 456899999999988888764
No 341
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.99 E-value=0.33 Score=52.63 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 295 LMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
..+|.+|-|+-||.|.+++.+++.|. +|+|-|.++.+++..+.+++.|.+.. .+|+++..|..++-
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~------------~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDP------------SAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccch------------hheeeecccHHHHh
Confidence 45789999999999999999999995 99999999999999999999988861 33888887776654
No 342
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.98 E-value=3.4 Score=42.69 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=82.0
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 006731 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINN 358 (633)
Q Consensus 279 ~~R~~~y~~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~ 358 (633)
..|+..+-+++.+..... ...|+.+|||-=.....+....-.+++=||.-. +++.-++.+...+.. .
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~-----------~ 130 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAE-----------P 130 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCC-----------C
Confidence 467777777777654322 347999999965554444322113677777655 444556666654431 1
Q ss_pred CCcEEEEEccccc-cccc---cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecc
Q 006731 359 AGKMEVVQGMVEE-LGES---MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTA 423 (633)
Q Consensus 359 ~~~I~vi~gd~e~-l~~~---~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~ 423 (633)
..+.+++..|+.+ +... ..+.....-++++|.+-++| .+.....++..+.+...||+.++.+..
T Consensus 131 ~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 131 PAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 2678899999862 1111 11223455688888765544 556678899999888889999987653
No 343
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.85 E-value=2.9 Score=44.21 Aligned_cols=90 Identities=26% Similarity=0.369 Sum_probs=55.2
Q ss_pred CCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc---ccc
Q 006731 297 KGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM---VEE 371 (633)
Q Consensus 297 ~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd---~e~ 371 (633)
++.+||..|||. |..+..++++ |+.+|++++.++...+.+++ .+.. .++... ...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~----------------~vi~~~~~~~~~ 224 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD----------------ETVNLARDPLAA 224 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC----------------EEEcCCchhhhh
Confidence 789999999875 6666666665 77689999998877755443 2321 112111 111
Q ss_pred cccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+. ...+.+|+++.. .+ . ...+....+.|+++|+++
T Consensus 225 ~~----~~~~~vd~vld~-~g----~----~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 225 YA----ADKGDFDVVFEA-SG----A----PAALASALRVVRPGGTVV 259 (339)
T ss_pred hh----ccCCCccEEEEC-CC----C----HHHHHHHHHHHhcCCEEE
Confidence 11 112459999852 11 1 123455668889999988
No 344
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=0.18 Score=49.09 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=57.0
Q ss_pred CCceeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 006731 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (633)
Q Consensus 45 ~~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~~~~~C~~C~~~~~~~~~~~~Hm~~~ 124 (633)
....|-||.+.|++..-+=.|..+.|+--|...+.+ |-|.|+| ||. -|+.+|.+..+=..||..+
T Consensus 105 h~~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veR-G~dMy~C--lvE------------gCt~KFkT~r~RkdH~I~~ 169 (253)
T KOG4173|consen 105 HGNSCSFCKRAFPTGHLLDAHILEWHDSLFQALVER-GQDMYQC--LVE------------GCTEKFKTSRDRKDHMIRM 169 (253)
T ss_pred ccchhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHc-CccHHHH--HHH------------hhhhhhhhhhhhhhHHHHh
Confidence 346999999999999999999999999988776654 5788874 222 3899999888899999988
Q ss_pred ccccc
Q 006731 125 YNLKE 129 (633)
Q Consensus 125 ~~~~~ 129 (633)
+..+.
T Consensus 170 Hk~Pa 174 (253)
T KOG4173|consen 170 HKYPA 174 (253)
T ss_pred ccCCc
Confidence 77665
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.73 E-value=1.2 Score=47.54 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=34.6
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |.++..+|++ |+..|++++.++...+.+++
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 456789999999875 6677777776 88789999999876655553
No 346
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=87.72 E-value=0.23 Score=38.65 Aligned_cols=27 Identities=37% Similarity=0.891 Sum_probs=22.5
Q ss_pred eeehhhHhhcccccccccCCccCCHHHHH
Q 006731 90 KLINYIRSQVAENRCWICGLTCQSNQDLQ 118 (633)
Q Consensus 90 KlINyiR~~~~~~~C~~C~~~~~~~~~~~ 118 (633)
+||.|+|..- +-|+|||.++.+.+.+.
T Consensus 18 ~l~~YLR~~~--~YC~~Cg~~Y~d~~dL~ 44 (55)
T PF13821_consen 18 KLLSYLREEH--NYCFWCGTKYDDEEDLE 44 (55)
T ss_pred HHHHHHHhhC--ceeeeeCCccCCHHHHH
Confidence 3899999987 56999999998866663
No 347
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=87.65 E-value=0.46 Score=50.27 Aligned_cols=92 Identities=22% Similarity=0.174 Sum_probs=65.8
Q ss_pred HHHHHHHHhCC-CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHH-------HHHHHHhCCCCCCCCCCCC
Q 006731 283 DSYRQAILENP-SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAV-------ATQIAKDNDFWWDRPQSEG 354 (633)
Q Consensus 283 ~~y~~aI~~~~-~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~-------A~~~~~~ngl~~~~~~~~~ 354 (633)
++-...|..+. ...+|+.|+|-=.|||.+...+|+-|| .|+|.|++-.++.. .+.+++..|..
T Consensus 193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~-------- 263 (421)
T KOG2671|consen 193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-------- 263 (421)
T ss_pred chhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCc--------
Confidence 44445555543 367899999999999999999999999 99999999888741 23455555532
Q ss_pred CCCCCCcEEEEEccccccccccccCCCcccEEEEec
Q 006731 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEW 390 (633)
Q Consensus 355 ~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~ 390 (633)
..-+.++.+|...-+- -....||.|||.+
T Consensus 264 ----~~fldvl~~D~sn~~~---rsn~~fDaIvcDP 292 (421)
T KOG2671|consen 264 ----SQFLDVLTADFSNPPL---RSNLKFDAIVCDP 292 (421)
T ss_pred ----chhhheeeecccCcch---hhcceeeEEEeCC
Confidence 1446677777776541 1146899999986
No 348
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.16 E-value=4.6 Score=35.59 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=51.7
Q ss_pred EEEECCCcchHHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 301 VMDIGCGTGILSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 301 VLDVGcGtG~lsl~~a~a---Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
|+-+|+|. ++..+++. +..+|+.+|.++..++.++. ..+.++.||..+......
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~---------------------~~~~~i~gd~~~~~~l~~ 57 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRDPERVEELRE---------------------EGVEVIYGDATDPEVLER 57 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEEESSHHHHHHHHH---------------------TTSEEEES-TTSHHHHHH
T ss_pred eEEEcCCH--HHHHHHHHHHhCCCEEEEEECCcHHHHHHHh---------------------cccccccccchhhhHHhh
Confidence 45566664 44444433 44589999999988766553 336789999987642222
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..-.+++.|++-. ........+-...+-+.|...++
T Consensus 58 a~i~~a~~vv~~~------~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 58 AGIEKADAVVILT------DDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp TTGGCESEEEEES------SSHHHHHHHHHHHHHHTTTSEEE
T ss_pred cCccccCEEEEcc------CCHHHHHHHHHHHHHHCCCCeEE
Confidence 3446899888632 12222223333445566776665
No 349
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.94 E-value=3.6 Score=44.10 Aligned_cols=45 Identities=24% Similarity=0.199 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEEECC-C-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 292 NPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 292 ~~~~~~~~~VLDVGc-G-tG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
...+.+|.+||-.|+ | .|.++..+|++ |+ +|++++.++.-.+.++
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLK 200 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 345678999999998 4 47777777777 77 7999998887655544
No 350
>PHA00616 hypothetical protein
Probab=86.87 E-value=0.29 Score=36.15 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=26.2
Q ss_pred CceeecCCCCCCCHHHHHHHhhhhcCcch
Q 006731 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDF 74 (633)
Q Consensus 46 ~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~ 74 (633)
|-.|+.|...|.....+..|+++.||=+-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~ 29 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK 29 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence 35899999999999999999999999743
No 351
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=86.83 E-value=1.7 Score=46.26 Aligned_cols=45 Identities=33% Similarity=0.601 Sum_probs=33.4
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |.++..+|++ |+++|++++.++...+.+++
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~ 215 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE 215 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 456789999998764 5566666665 77789999998887766643
No 352
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=86.72 E-value=1.5 Score=47.25 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=34.8
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
.+.++++||-.|+|. |.++..+|++ |+.+|++++.++...+.+++
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 456789999999875 6777777776 88789999999877655543
No 353
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.66 E-value=4.1 Score=43.75 Aligned_cols=38 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMA 333 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~ 333 (633)
..++.+||-.|+|. |.++..+|++ |+ +|++++.++...
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~ 217 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKR 217 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHH
Confidence 35788999998875 7777777776 77 688888877544
No 354
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=86.38 E-value=5.4 Score=42.67 Aligned_cols=43 Identities=33% Similarity=0.502 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
..++.+||-.|+|. |..+..+|++ |+++|++++.++.....++
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 219 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR 219 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34788999998765 6666666666 7778999998887654443
No 355
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=85.86 E-value=5.9 Score=43.04 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHH
Q 006731 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEK 331 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~ 331 (633)
.++.+||-.|+|. |.++..+|++ |+ +|++++.++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~ 213 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSE 213 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChH
Confidence 4689999999986 7777777777 87 7999988754
No 356
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.47 E-value=2.5 Score=44.46 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=33.6
Q ss_pred CCCCCCCCEEEEECC-C-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 292 NPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 292 ~~~~~~~~~VLDVGc-G-tG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
.....+|.+||-.|+ | .|.++..+|++ |+ +|+++..++...+.++
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLK 180 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 345678999999995 3 47777777776 77 7999998887665554
No 357
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=85.39 E-value=3 Score=44.92 Aligned_cols=46 Identities=30% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
....++.+||-.|+|. |.++..+|++ |+..|++++.++...+.+++
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~ 226 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ 226 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3567789999998875 6666666666 88779999988877666643
No 358
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=85.27 E-value=7.9 Score=41.11 Aligned_cols=43 Identities=30% Similarity=0.484 Sum_probs=32.5
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
..++.+||-.|+|. |.++..+|++ |+++|++++.++...+.++
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 217 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAK 217 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34688999998875 6666666776 8878999998887765554
No 359
>PRK10083 putative oxidoreductase; Provisional
Probab=85.25 E-value=5.9 Score=41.77 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=34.7
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHH-c-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQ-A-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~-a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |.++..+|+ . |+..|++++.++...+.+++
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 467789999999875 667777777 3 98789999998877656554
No 360
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.24 E-value=1.2 Score=42.36 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEE-Eccc-cccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVV-QGMV-EELGES 375 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi-~gd~-e~l~~~ 375 (633)
|++++-+|...=..-..+.+.||++|..||.++--++ +.++ +++.-+ ..+. .++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~---~~~~------------------dr~ssi~p~df~~~~~-- 58 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQ---EEFR------------------DRLSSILPVDFAKNWQ-- 58 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccC---cccc------------------cccccccHHHHHHHHH--
Confidence 6889999999888888888999999999998763221 1110 222111 1111 1111
Q ss_pred cccCCCcccEEEEe-ccccccc---C-----hhhHHHHHHHHhhcccCCcEEEeecceeEEEEecCCCCCccc-cccccC
Q 006731 376 MQIQPHSVDVLVSE-WMGYCLL---Y-----ESMLSSVLFARDQWLKPGGAILPDTATMFVAGFGRGGTSLPF-WENVYG 445 (633)
Q Consensus 376 ~~l~~~~~DvIvse-~mg~~L~---~-----e~~l~~vl~a~~r~LkpgG~lip~~~t~~~~~~~~~~~~~~~-w~~vyG 445 (633)
.-.++||.+.|- .+.++.+ + .+++ ..+..+.++|||||.++. ..|++. ..+.| -..+||
T Consensus 59 --~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l------~vPvG~--d~i~fNahRiYg 127 (177)
T PF03269_consen 59 --KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL------GVPVGT--DAIQFNAHRIYG 127 (177)
T ss_pred --HhhccchhhheechhccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE------EeecCC--cceEEecceeec
Confidence 123679998873 2222211 1 1222 345667899999999984 457763 33333 234565
Q ss_pred c
Q 006731 446 F 446 (633)
Q Consensus 446 ~ 446 (633)
.
T Consensus 128 ~ 128 (177)
T PF03269_consen 128 P 128 (177)
T ss_pred H
Confidence 3
No 361
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.13 E-value=2.2 Score=46.06 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=36.9
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
....++.+||-.|+|. |.++..+|++ |+++|++++.++...+.|++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3467789999999986 7777777776 88789999999987766654
No 362
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.94 E-value=3.8 Score=39.41 Aligned_cols=108 Identities=20% Similarity=0.228 Sum_probs=62.6
Q ss_pred EEECCCcchHHHHHHHc-C-CCeEEEEeC--CHHHHHH---HHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 302 MDIGCGTGILSLFAAQA-G-ASRVIAVEA--SEKMAAV---ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 302 LDVGcGtG~lsl~~a~a-G-a~~V~aVD~--S~~~~~~---A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
|-||=|.=.+|+.++++ + +..++|.-. .....+. |..++..-.-. +.......|+..+..
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-------------g~~V~~~VDat~l~~ 67 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-------------GVTVLHGVDATKLHK 67 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-------------CCccccCCCCCcccc
Confidence 34666666677777776 5 567777544 3333222 22333222110 222234457777664
Q ss_pred ccccCCCcccEEEEeccccc----------ccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 375 SMQIQPHSVDVLVSEWMGYC----------LLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 375 ~~~l~~~~~DvIvse~mg~~----------L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
...+...+||.||-+....+ -.+...+..++..+.++|+++|.+..+.
T Consensus 68 ~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 68 HFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred cccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 43345688999998743222 0223456788999999999999998554
No 363
>PRK11524 putative methyltransferase; Provisional
Probab=84.79 E-value=1.2 Score=46.49 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=42.6
Q ss_pred CcEEEEEccccccccccccCCCcccEEEEeccccccc--------------ChhhHHHHHHHHhhcccCCcEEEee
Q 006731 360 GKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL--------------YESMLSSVLFARDQWLKPGGAILPD 421 (633)
Q Consensus 360 ~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~--------------~e~~l~~vl~a~~r~LkpgG~lip~ 421 (633)
...+++++|..++... ++.++||+||+.+. |.+. +...+..++.++.++|||||.++..
T Consensus 7 ~~~~i~~gD~~~~l~~--l~~~siDlIitDPP-Y~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKK--IPSESVDLIFADPP-YNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHh--cccCcccEEEECCC-cccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5567899999986422 56789999999853 2220 1123467889999999999998853
No 364
>PLN02702 L-idonate 5-dehydrogenase
Probab=84.64 E-value=4.9 Score=43.13 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=33.2
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-+|+|. |..+..+|++ |+..|++++.++...+.+++
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 224 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ 224 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 456788999998764 6666666665 88789999998766655443
No 365
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.40 E-value=4.8 Score=42.57 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=55.5
Q ss_pred CCCC--CEEEEECC-C-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 295 LMKG--AVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 295 ~~~~--~~VLDVGc-G-tG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
..++ .+||-.|+ | .|.++..+|++ |+++|++++.++...+.+++. .|.. . ++...-
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~--------------~--vi~~~~ 210 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD--------------A--AINYKT 210 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc--------------E--EEECCC
Confidence 4444 89999997 3 47777777776 876899999988765555432 2332 1 222211
Q ss_pred cccccc-cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EELGES-MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l~~~-~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.++... ..+....+|+|+. ..+. . .+....+.|+++|.++
T Consensus 211 ~~~~~~i~~~~~~gvd~vid-~~g~-----~----~~~~~~~~l~~~G~iv 251 (345)
T cd08293 211 DNVAERLRELCPEGVDVYFD-NVGG-----E----ISDTVISQMNENSHII 251 (345)
T ss_pred CCHHHHHHHHCCCCceEEEE-CCCc-----H----HHHHHHHHhccCCEEE
Confidence 111100 0012257999984 2221 1 1244567899999988
No 366
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=84.32 E-value=3.2 Score=42.86 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=49.8
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcC------CCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAG------ASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAG 360 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aG------a~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~ 360 (633)
..+.+.--+.++..++|+|||.|.||.+++++- ...++.||....-. .+...++..... .
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~-------------~ 73 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESE-------------P 73 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCC-------------C
Confidence 334443334577899999999999999999873 24899999865433 333444433211 3
Q ss_pred cEEEEEccccccc
Q 006731 361 KMEVVQGMVEELG 373 (633)
Q Consensus 361 ~I~vi~gd~e~l~ 373 (633)
.++-+..|+.++.
T Consensus 74 ~~~R~riDI~dl~ 86 (259)
T PF05206_consen 74 KFERLRIDIKDLD 86 (259)
T ss_pred ceEEEEEEeeccc
Confidence 5778888998876
No 367
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.18 E-value=2 Score=46.70 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHH
Q 006731 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVA 336 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A 336 (633)
.++.+|+-+|+|. |..+...++. |+ +|+++|.++..++.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQL 206 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 3567799999995 6666555554 88 799999998655433
No 368
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.71 E-value=2.4 Score=45.34 Aligned_cols=73 Identities=27% Similarity=0.270 Sum_probs=53.6
Q ss_pred CCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
..+|+|+=||.|.+++-+.++|..-+.|+|+++.+++.-+.+.. .-.++.+|+.++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~-------------------~~~~~~~di~~~~~~~- 62 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP-------------------HGDIILGDIKELDGEA- 62 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC-------------------CCceeechHhhcChhh-
Confidence 35899999999999999999999889999999988755554432 1456778887765211
Q ss_pred cCCCcccEEEEec
Q 006731 378 IQPHSVDVLVSEW 390 (633)
Q Consensus 378 l~~~~~DvIvse~ 390 (633)
++...+|+|+..+
T Consensus 63 ~~~~~~DvligGp 75 (328)
T COG0270 63 LRKSDVDVLIGGP 75 (328)
T ss_pred ccccCCCEEEeCC
Confidence 1112799999753
No 369
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=83.67 E-value=0.47 Score=29.49 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.4
Q ss_pred eeecCCCCCCCHHHHHHHhhhhc
Q 006731 48 LCLFCDAGYSSCDTLFEHCRLSH 70 (633)
Q Consensus 48 ~CLFC~~~~~~~~~~l~Hm~~~H 70 (633)
.|--|++.|++...+..||+. |
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCccCCHHHHHHHHhH-C
Confidence 688999999999999999987 5
No 370
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.56 E-value=7.1 Score=40.95 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=57.9
Q ss_pred CCCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 292 NPSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
.....++.+||.+|+|. |..+..+|++ |++.|++++.++...+.+++ .+. . .++..+-
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~--------------~--~~~~~~~ 213 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGA--------------T--ETVDPSR 213 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC--------------e--EEecCCC
Confidence 34567889999998763 5566666666 77559999999887655543 232 1 2222221
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.+.......+...+|+++.. .+. ...+....+.|+++|.++
T Consensus 214 ~~~~~~~~~~~~~vd~v~~~-~~~--------~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 214 EDPEAQKEDNPYGFDVVIEA-TGV--------PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred CCHHHHHHhcCCCCcEEEEC-CCC--------hHHHHHHHHHHhcCCEEE
Confidence 11100000234679999952 211 234455567889999887
No 371
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=83.53 E-value=1 Score=27.70 Aligned_cols=21 Identities=33% Similarity=0.819 Sum_probs=17.1
Q ss_pred cccccCCccCCHHHHHHHHHH
Q 006731 103 RCWICGLTCQSNQDLQNHLHE 123 (633)
Q Consensus 103 ~C~~C~~~~~~~~~~~~Hm~~ 123 (633)
.|..|+..|.+...++.||..
T Consensus 2 ~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 2 QCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp E-SSTS-EESSHHHHHHHHHH
T ss_pred CCcCCCCcCCcHHHHHHHHHh
Confidence 599999999999999999974
No 372
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=83.26 E-value=7.9 Score=42.00 Aligned_cols=45 Identities=40% Similarity=0.557 Sum_probs=32.6
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |..++.+|++ |+.+|++++.++...+.+++
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~ 246 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE 246 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 566788999988875 6666666666 77789999988875544443
No 373
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.08 E-value=7.2 Score=41.63 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=61.7
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~-------ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
++|--||+|+ | .++..++.+|. .|+..|.++..++.++..+.. .++. ......++++.. ++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~i~~~~-~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLA--------PGASPARLRFVA-TI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--------hhhHHhhceecC-CH
Confidence 6799999997 4 46777778898 999999999887766654431 2221 011113444332 22
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
++. -...|+|+-.. ......-..++..+.+.++|+.++-
T Consensus 78 ~~a-------v~~aDlViEav----pE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 78 EAC-------VADADFIQESA----PEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred HHH-------hcCCCEEEECC----cCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 221 14689998532 2223345567788889999987444
No 374
>PRK10458 DNA cytosine methylase; Provisional
Probab=82.89 E-value=5.1 Score=44.98 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=35.9
Q ss_pred CCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 006731 298 GAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~ 339 (633)
.-+++|+=||.|.+++-+-++|...|.++|+++.+.+.-+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHH
Confidence 468999999999999999999998899999999777555444
No 375
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=82.88 E-value=1.9 Score=47.86 Aligned_cols=94 Identities=26% Similarity=0.315 Sum_probs=53.7
Q ss_pred CCCCCEEEEECCCc-chH-HHHHHHcCCCeEE-----EEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc
Q 006731 295 LMKGAVVMDIGCGT-GIL-SLFAAQAGASRVI-----AVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~l-sl~~a~aGa~~V~-----aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g 367 (633)
..++++|+-||||+ |.. ++-+...|...++ +||......+.| ...|+. + +
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA----~~dGF~-----------------v--~ 89 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA----TENGFK-----------------V--G 89 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHH----HhcCCc-----------------c--C
Confidence 46789999999998 551 1111111442232 333334333333 333542 1 3
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
++.+.. ...|+|+.-. ..+ .-..+...+...||||..+.++..-
T Consensus 90 ~~~Ea~-------~~ADvVviLl-----PDt-~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 90 TYEELI-------PQADLVINLT-----PDK-QHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred CHHHHH-------HhCCEEEEcC-----ChH-HHHHHHHHHHhhCCCCCEEEecCCc
Confidence 444432 5799999632 222 3455668889999999999977643
No 376
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=82.72 E-value=2.8 Score=44.28 Aligned_cols=97 Identities=23% Similarity=0.424 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...++.+||..|+|. |..+..+|++ |+.+|++++.++...+.+++ .+. + .++...-.+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~--------------~--~vi~~~~~~ 223 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGA--------------T--DIINPKNGD 223 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCC--------------c--EEEcCCcch
Confidence 355788999988763 6666666666 75689999888766655443 232 1 122221111
Q ss_pred cccc--cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 372 LGES--MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 372 l~~~--~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+... ...+.+.+|+++.. .+. ...+....+.|+++|.++
T Consensus 224 ~~~~i~~~~~~~~~d~vld~-~g~--------~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 224 IVEQILELTGGRGVDCVIEA-VGF--------EETFEQAVKVVRPGGTIA 264 (347)
T ss_pred HHHHHHHHcCCCCCcEEEEc-cCC--------HHHHHHHHHHhhcCCEEE
Confidence 1100 00233579999852 211 124555567889999987
No 377
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.48 E-value=12 Score=37.11 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=47.8
Q ss_pred CCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 297 ~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
++++||-.|++.|+ ++..+++.|+ +|++++.++.....+.+..... .++.++.+|+.+..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY----------------GNIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----------------CCeEEEECCCCCHH
Confidence 57899999997543 4455556688 8999999886554443333221 35788888887643
Q ss_pred cccc------cCCCcccEEEEec
Q 006731 374 ESMQ------IQPHSVDVLVSEW 390 (633)
Q Consensus 374 ~~~~------l~~~~~DvIvse~ 390 (633)
.... ...+++|.|+...
T Consensus 67 ~~~~~~~~~~~~~~~id~ii~~a 89 (238)
T PRK05786 67 SARNVIEKAAKVLNAIDGLVVTV 89 (238)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcC
Confidence 1100 0013578888654
No 378
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.39 E-value=3.6 Score=44.96 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=49.9
Q ss_pred CEEEEECCCc-ch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 299 AVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 299 ~~VLDVGcGt-G~-lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
++||-||||. |. .+..+|+.|..+|+..|.|...++.+..... .+++.++.|+.+.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~------------------~~v~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG------------------GKVEALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc------------------ccceeEEecccChHHHH
Confidence 5799999985 43 4555677786799999999876655443321 46888888888764221
Q ss_pred ccCCCcccEEEEec
Q 006731 377 QIQPHSVDVLVSEW 390 (633)
Q Consensus 377 ~l~~~~~DvIvse~ 390 (633)
.+- ..+|+||+-.
T Consensus 64 ~li-~~~d~VIn~~ 76 (389)
T COG1748 64 ALI-KDFDLVINAA 76 (389)
T ss_pred HHH-hcCCEEEEeC
Confidence 122 4569999754
No 379
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.14 E-value=11 Score=39.82 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=33.9
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
..+.++.+||-.|+|. |.++..+|++ |++.|+++..++...+.+++
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3567889999988775 6666666766 77559999988876655544
No 380
>PRK06701 short chain dehydrogenase; Provisional
Probab=82.02 E-value=9.1 Score=39.84 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=48.1
Q ss_pred CCCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHH-HHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccc
Q 006731 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEK-MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~-~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e 370 (633)
..++++||-.|++.|+ ++..+++.|+ +|+.+..+.. ..+.....++..+ .++.++.+|+.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~ 106 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG---------------VKCLLIPGDVS 106 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC---------------CeEEEEEccCC
Confidence 4568899999988764 5556666787 7888877642 2223333333222 46888899887
Q ss_pred cccccccc------CCCcccEEEEe
Q 006731 371 ELGESMQI------QPHSVDVLVSE 389 (633)
Q Consensus 371 ~l~~~~~l------~~~~~DvIvse 389 (633)
+......+ ..+++|+||..
T Consensus 107 ~~~~~~~~~~~i~~~~~~iD~lI~~ 131 (290)
T PRK06701 107 DEAFCKDAVEETVRELGRLDILVNN 131 (290)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 64311000 01468999865
No 381
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.46 E-value=11 Score=39.77 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHhCCCCCCCCEEEEECCCc-chH-HHHHHHcCCCeEEEEeCCHHHHHHH
Q 006731 288 AILENPSLMKGAVVMDIGCGT-GIL-SLFAAQAGASRVIAVEASEKMAAVA 336 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGt-G~l-sl~~a~aGa~~V~aVD~S~~~~~~A 336 (633)
++........+++|+-+|+|. |.. ...+.+.|+ +|++++.++...+.+
T Consensus 142 a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 142 AIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARI 191 (296)
T ss_pred HHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 343333345689999999996 443 333344587 999999997654333
No 382
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.45 E-value=13 Score=38.61 Aligned_cols=108 Identities=14% Similarity=0.176 Sum_probs=61.7
Q ss_pred CEEEEECCCc--chHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-------HhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIA-------KDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 299 ~~VLDVGcGt--G~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~-------~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
++|--||+|. +.++..++++|. +|+++|.++..++.++..+ .+.+.-. ..... ....++++. .+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~---~~~~~-~~~~~l~~~-~~~ 77 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMT---EADKE-AALARITGT-TDL 77 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHH-HHHhCeEEe-CCH
Confidence 3688899997 467777888887 8999999999886655332 2222100 00000 000133322 222
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
.. -..+|+|+-... ........++..+.+.++|+.++..++..
T Consensus 78 ~~--------~~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 78 DD--------LKDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred HH--------hccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 21 246899984211 11122357888888999999877655444
No 383
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.44 E-value=1.5 Score=46.01 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=71.4
Q ss_pred CCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeee--hhhHhhc----------ccccccccCCccCCHHHHHHH
Q 006731 53 DAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLI--NYIRSQV----------AENRCWICGLTCQSNQDLQNH 120 (633)
Q Consensus 53 ~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlI--NyiR~~~----------~~~~C~~C~~~~~~~~~~~~H 120 (633)
+.+...+.++-.|.|.+|+|-|=.+.....-+|..-++|. |-+|... +.-.|.+|...|++.+.|..|
T Consensus 160 ~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~H 239 (493)
T COG5236 160 HRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRH 239 (493)
T ss_pred hhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccceecChHHHHHH
Confidence 4566679999999999999988777777778888888874 3445432 122499999999999999999
Q ss_pred HHHhcc--cccccCCCCCcCcccc------cccCcccccccC
Q 006731 121 LHEAYN--LKETKLRWDKEKYLKP------FMQDDKLLYSFG 154 (633)
Q Consensus 121 m~~~~~--~~~~~~~w~~d~yl~P------v~e~D~lL~~ld 154 (633)
|+..+. -+-++..--..+|++- -+++|...|.+.
T Consensus 240 cR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~q 281 (493)
T COG5236 240 CRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQ 281 (493)
T ss_pred HHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEE
Confidence 997531 1111222334555544 477888777664
No 384
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=81.40 E-value=9.8 Score=39.88 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=30.7
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCH
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASE 330 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~ 330 (633)
+..++.......++++||-+|+| |. .+..+++.|+++|+.++.++
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 44455443333568899999998 63 33334567998899999885
No 385
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.35 E-value=4.4 Score=40.10 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=28.4
Q ss_pred CCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCC
Q 006731 296 MKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEAS 329 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S 329 (633)
..+.+||-||||. | ..+..++++|.++++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4568999999995 4 46778888899999999977
No 386
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=81.20 E-value=1.4 Score=45.15 Aligned_cols=75 Identities=25% Similarity=0.416 Sum_probs=51.4
Q ss_pred CCCceeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCcee-eehhhHhhccccc--ccccCCccCCHHHHHHH
Q 006731 44 ESGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFK-LINYIRSQVAENR--CWICGLTCQSNQDLQNH 120 (633)
Q Consensus 44 ~~~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IK-lINyiR~~~~~~~--C~~C~~~~~~~~~~~~H 120 (633)
.....|-.|++++.++-++-.|.+ .|+.-+. ...-|-.|= +.= |=--||...++.= |..|+++|..+..|++|
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHir-TH~l~c~--C~iCGKaFS-RPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH 234 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIR-THTLPCE--CGICGKAFS-RPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH 234 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhh-ccCCCcc--ccccccccc-chHHhhcccccccCCCCccCCcccchhcchHHHHHH
Confidence 456789999999999999999988 5553111 011111111 111 3336788877655 99999999999999999
Q ss_pred HH
Q 006731 121 LH 122 (633)
Q Consensus 121 m~ 122 (633)
|.
T Consensus 235 mQ 236 (279)
T KOG2462|consen 235 MQ 236 (279)
T ss_pred HH
Confidence 96
No 387
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.07 E-value=12 Score=39.16 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=59.3
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhC--------CCCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN--------DFWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~n--------gl~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
++|.-||+|+ | .++..++++|. +|+.+|.++..++.+++.+... .+.. .........++++. .+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~-~d 77 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATK----EAPAEAALNRITLT-TD 77 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh----hhhHHHHHcCeEEe-CC
Confidence 4788999997 3 46677777787 8999999998887776653211 1100 00000000234322 23
Q ss_pred ccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
..+. ....|+||.... ........++..+...++++.++.
T Consensus 78 ~~~a-------~~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 78 LAEA-------VKDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred HHHH-------hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 3221 146899985321 112245667778888888777654
No 388
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=80.96 E-value=8.7 Score=40.57 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=56.4
Q ss_pred CEEEEECCCc--chHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 299 AVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 299 ~~VLDVGcGt--G~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
.+|+-+|+|. |.++..++++|. .|+.++.++..++..+ +.+|+.. .. . +....+...... .
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~---~~~Gl~i-------~~-~-g~~~~~~~~~~~-~--- 65 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQ---QAGGLTL-------VE-Q-GQASLYAIPAET-A--- 65 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHh---hcCCeEE-------ee-C-CcceeeccCCCC-c---
Confidence 4799999997 578888899887 8999998864442222 2233310 00 0 111111111110 1
Q ss_pred ccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 377 QIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 377 ~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
-+.+.+|+|+.-.=. .....++..+..++.++..+++
T Consensus 66 -~~~~~~D~viv~vK~------~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 66 -DAAEPIHRLLLACKA------YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred -ccccccCEEEEECCH------HhHHHHHHHHHhhCCCCCEEEE
Confidence 112579999853211 2356677888888998887774
No 389
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=80.82 E-value=1.1 Score=29.03 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.5
Q ss_pred cccccCCccCCHHHHHHHHH
Q 006731 103 RCWICGLTCQSNQDLQNHLH 122 (633)
Q Consensus 103 ~C~~C~~~~~~~~~~~~Hm~ 122 (633)
.|..||++|.+ +.+..|+.
T Consensus 4 ~C~~CgR~F~~-~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKFNP-DRLEKHEK 22 (25)
T ss_pred cCCCCCCEECH-HHHHHHHH
Confidence 49999999977 89999975
No 390
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=80.76 E-value=8.3 Score=40.31 Aligned_cols=97 Identities=20% Similarity=0.157 Sum_probs=57.2
Q ss_pred CCCCCCCCEEEEECCC--cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 292 NPSLMKGAVVMDIGCG--TGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcG--tG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
.....+|.+||-.|++ .|.++..+|++ |+ +|+++..++.-.+.+++ .|.. .++...
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~----------------~vi~~~ 196 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD----------------AVFNYK 196 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC----------------EEEeCC
Confidence 3446788999999853 36677777776 77 79999988876655544 3432 122222
Q ss_pred ccccccc-cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 369 VEELGES-MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 369 ~e~l~~~-~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
-+++... ..+....+|+|+- ..| . ..+....+.|+++|.++
T Consensus 197 ~~~~~~~v~~~~~~gvd~vld-~~g----~-----~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 197 TVSLEEALKEAAPDGIDCYFD-NVG----G-----EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred CccHHHHHHHHCCCCcEEEEE-CCC----H-----HHHHHHHHhhccCCEEE
Confidence 1111100 0012356999984 221 1 23355567889999987
No 391
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=80.63 E-value=5.9 Score=46.53 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=66.9
Q ss_pred CCCEEEEECCCcchHHHHHHHc-------CC------CeEEEEeCCHHHHHHH--------------HHHHHhCCCCCCC
Q 006731 297 KGAVVMDIGCGTGILSLFAAQA-------GA------SRVIAVEASEKMAAVA--------------TQIAKDNDFWWDR 349 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~a~a-------Ga------~~V~aVD~S~~~~~~A--------------~~~~~~ngl~~~~ 349 (633)
+.-+|||+|=|+|+-.+.+.+. +. -+++++|..|...+.. ++.... ++...
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 134 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQ--WPLLL 134 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHh--CCccC
Confidence 3468999999999754444421 11 2799999755222222 222211 10000
Q ss_pred CCCCCCCC--CCCcEEEEEccccccccccccCCCcccEEEEecccccccChhhH-HHHHHHHhhcccCCcEEEeec
Q 006731 350 PQSEGNIN--NAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLLYESML-SSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 350 ~~~~~~~~--~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l-~~vl~a~~r~LkpgG~lip~~ 422 (633)
+-.....+ ..-.++++.||+.+.... + ..++|+++...+.-. -+..|+ ..++..+.++++|||++.-.+
T Consensus 135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~--~-~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 135 PGCHRLLFDDGRVTLDLWFGDANELLPQ--L-DARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CCceEEEecCCcEEEEEEecCHHHHHHh--c-cccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 00000001 112566888999875421 2 256999997654322 233343 578999999999999998433
No 392
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.47 E-value=11 Score=39.90 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=34.2
Q ss_pred hCCCCCCCCEEEEECC-C-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 291 ENPSLMKGAVVMDIGC-G-TGILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 291 ~~~~~~~~~~VLDVGc-G-tG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
....+.+|.+||-.|+ | .|.++..+|++ |+ +|+++..++...+.+++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKN 194 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence 3345678999999997 3 36677777776 87 79999888876655544
No 393
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=80.22 E-value=0.91 Score=28.63 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.0
Q ss_pred eeecCCCCCCCHHHHHHHhhhhcC
Q 006731 48 LCLFCDAGYSSCDTLFEHCRLSHC 71 (633)
Q Consensus 48 ~CLFC~~~~~~~~~~l~Hm~~~H~ 71 (633)
.|-+|+.... ...+.+||+..|+
T Consensus 2 ~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 2 KCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp E-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCcCC-HHHHHHHHHhhCc
Confidence 6999999988 8899999999885
No 394
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.16 E-value=13 Score=34.41 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=33.1
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHH
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAV 335 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~ 335 (633)
+..++.+.....++++|+-+|+|. | .++..+++.|..+|+.++.++...+.
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKA 58 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH
Confidence 455666543336678999999974 2 33444445555689999998765533
No 395
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=79.90 E-value=9.9 Score=40.14 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=32.9
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...++.+||-.|+|. |..+..+|++ |+ +|++++.++.-.+.+++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARK 205 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 466789999999765 6666666766 77 79999998776655543
No 396
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.56 E-value=7.8 Score=40.43 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=60.4
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~-------ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
++|.-||+|. | .++..++++|. +|+.+|.++..++.+.+.+.. .+.-. .. .......++++. .+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~-~~~~~~~~i~~~-~~~ 75 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLT---EA-ARQAALARLSYS-LDL 75 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HH-HHHHHHhCeEEe-CcH
Confidence 4688999997 3 46777777887 899999999988777654321 11000 00 000000123322 222
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
.+. -...|+|+.-.. ........++..+.+.++|+.++.-++.+
T Consensus 76 ~~~-------~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 76 KAA-------VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred HHh-------hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 221 246899985321 11222445667777888888766544444
No 397
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.52 E-value=4.4 Score=44.25 Aligned_cols=47 Identities=21% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 006731 292 NPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~ 339 (633)
.+.+.++.+||-|..| |--++.++-+++++|+|||+||......+-.
T Consensus 30 aL~i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HhCCCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHH
Confidence 3457889999999777 6666666777888999999999877555433
No 398
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.50 E-value=4.9 Score=41.24 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=65.1
Q ss_pred CCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 294 SLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 294 ~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
.+.+|....|+|+-+|..+..+.+.+- .||+||.-+.+. .. ... +.|+-...|-..+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~----sL-~dt----------------g~v~h~r~DGfk~~ 265 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQ----SL-MDT----------------GQVTHLREDGFKFR 265 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhh----hh-hcc----------------cceeeeeccCcccc
Confidence 467899999999999999999999988 999999876332 22 122 56777777777765
Q ss_pred cccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCC
Q 006731 374 ESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPG 415 (633)
Q Consensus 374 ~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~Lkpg 415 (633)
-...++|-.||..+ ..+..+-..+..||..|
T Consensus 266 ----P~r~~idWmVCDmV-------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 266 ----PTRSNIDWMVCDMV-------EKPARVAALIAKWLVNG 296 (358)
T ss_pred ----cCCCCCceEEeehh-------cCcHHHHHHHHHHHHcc
Confidence 22478999998764 23455666667777765
No 399
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=79.42 E-value=19 Score=35.63 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=28.7
Q ss_pred CCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCC
Q 006731 296 MKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEAS 329 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S 329 (633)
.+.++|+-+|||. | ..+..++++|..+++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3568999999995 4 57888899999899999988
No 400
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=79.30 E-value=5.2 Score=43.02 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCH
Q 006731 296 MKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASE 330 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~ 330 (633)
..+++||-||||. | .++..++++|..+++.||.+.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4568999999995 3 578888999999999999863
No 401
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=79.30 E-value=6.2 Score=41.81 Aligned_cols=98 Identities=24% Similarity=0.392 Sum_probs=55.6
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc-c
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-E 370 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~-e 370 (633)
...++.+||-.|+|. |..+..+|++ |+.+|++++.++.....+++ .|.. ..+.....+. .
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-------------~~v~~~~~~~~~ 225 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT-------------HTVNSAKGDAIE 225 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-------------ceeccccccHHH
Confidence 456788888888764 5555556665 75689999998866655543 2321 1122111111 1
Q ss_pred ccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 371 ~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.+.. ..+...+|+|+.. ++ . ...+....+.|+++|.++
T Consensus 226 ~i~~--~~~~~~~d~vld~-~g----~----~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 226 QVLE--LTDGRGVDVVIEA-VG----I----PATFELCQELVAPGGHIA 263 (345)
T ss_pred HHHH--HhCCCCCCEEEEC-CC----C----HHHHHHHHHhccCCcEEE
Confidence 1110 0223569999842 21 1 123556668899999987
No 402
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=79.01 E-value=16 Score=39.25 Aligned_cols=97 Identities=26% Similarity=0.300 Sum_probs=55.1
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...++.+||-.|+|. |.++..+|++ |+..|++++.++...+.+++ .+.. .++..+...
T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~----------------~v~~~~~~~ 243 (367)
T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT----------------HTVNAAKED 243 (367)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----------------eEecCCccc
Confidence 346788888887763 5666666665 77569999988876655543 2321 222222111
Q ss_pred cccc--cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 372 LGES--MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 372 l~~~--~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+... ...+...+|+|+.. ++ .. ..+....+.|+++|.++
T Consensus 244 ~~~~l~~~~~~~~~d~vld~-vg----~~----~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 244 AVAAIREITGGRGVDVVVEA-LG----KP----ETFKLALDVVRDGGRAV 284 (367)
T ss_pred HHHHHHHHhCCCCCCEEEEe-CC----CH----HHHHHHHHHHhcCCEEE
Confidence 1000 00234569999852 21 11 13455567899999987
No 403
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.90 E-value=11 Score=39.79 Aligned_cols=88 Identities=20% Similarity=0.200 Sum_probs=52.5
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGA-SRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa-~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
.+|.-||+|. | .++..+.+.|. .+|+++|.++...+.+++ .|.. . . +..+..+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~-------------~--~-~~~~~~~~--- 63 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG-------------D--R-VTTSAAEA--- 63 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC-------------c--e-ecCCHHHH---
Confidence 5799999986 3 45566666674 489999999876654432 3321 1 1 11122211
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
....|+||.-. .......++..+..++++|+.++
T Consensus 64 ----~~~aDvViiav------p~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 64 ----VKGADLVILCV------PVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ----hcCCCEEEECC------CHHHHHHHHHHHHhhCCCCCEEE
Confidence 14689998632 12334556666777788887554
No 404
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.62 E-value=11 Score=39.25 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=53.3
Q ss_pred EEEEECCCc--chHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 300 VVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 300 ~VLDVGcGt--G~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
+|.-||+|. |.++..++++|. +|+++|.++..++.+.+ .|. +.....+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~----------------~~~~~~~~~------- 53 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL----------------VDEASTDLS------- 53 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC----------------cccccCCHh-------
Confidence 577889886 457777777776 89999999877655543 222 111111111
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecce
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTAT 424 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t 424 (633)
. ....|+||.- ........++..+...++|+. ++-+.++
T Consensus 54 ~-~~~aDlVila------vp~~~~~~~~~~l~~~l~~~~-ii~d~~S 92 (279)
T PRK07417 54 L-LKDCDLVILA------LPIGLLLPPSEQLIPALPPEA-IVTDVGS 92 (279)
T ss_pred H-hcCCCEEEEc------CCHHHHHHHHHHHHHhCCCCc-EEEeCcc
Confidence 1 2468999853 223445566777777777764 4444433
No 405
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.50 E-value=14 Score=41.57 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=52.0
Q ss_pred CCCCCEEEEECCCc-chH-HHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGT-GIL-SLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~l-sl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
...|++|+-+|+|. |.. +..+...|+ +|+++|.++.....|.. .|. ++. +++++
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~----~G~-----------------~~~--~leel 306 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAM----EGY-----------------QVV--TLEDV 306 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHh----cCc-----------------eec--cHHHH
Confidence 57899999999997 543 333333487 89999988764422221 232 111 33333
Q ss_pred ccccccCCCcccEEEEecccccccChhhHHHHH-HHHhhcccCCcEEE
Q 006731 373 GESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL-FARDQWLKPGGAIL 419 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl-~a~~r~LkpgG~li 419 (633)
. ...|+|+.-. +. ..++ ......+|||++++
T Consensus 307 l-------~~ADIVI~at-Gt--------~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 307 V-------ETADIFVTAT-GN--------KDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred H-------hcCCEEEECC-Cc--------ccccCHHHHhccCCCcEEE
Confidence 2 4699999642 11 1222 34567789999988
No 406
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.48 E-value=7.3 Score=41.28 Aligned_cols=43 Identities=33% Similarity=0.370 Sum_probs=33.9
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
..+|++|--+|.|- |.++...|+| |. +|++||-+..--+.|-+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIK 223 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHH
Confidence 45899999999874 7889999998 66 99999999754444433
No 407
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=78.33 E-value=4.9 Score=40.20 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=53.6
Q ss_pred HHHHhCCCCCCCCEEEEECCCcchHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEE
Q 006731 287 QAILENPSLMKGAVVMDIGCGTGILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQ 366 (633)
Q Consensus 287 ~aI~~~~~~~~~~~VLDVGcGtG~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~ 366 (633)
+.|.+........-|.+||.|.|.++..+..+|+.+...||..+..+.-.+- +++.. + .+..+.+
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~-L~EAa-~-------------~~~~IHh 104 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQM-LSEAA-P-------------GKLRIHH 104 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHH-HhhcC-C-------------cceEEec
Confidence 3455555667788999999999999999999999999999999887744443 33322 1 5677777
Q ss_pred ccccccc
Q 006731 367 GMVEELG 373 (633)
Q Consensus 367 gd~e~l~ 373 (633)
+|+....
T Consensus 105 ~D~LR~~ 111 (326)
T KOG0821|consen 105 GDVLRFK 111 (326)
T ss_pred cccceeh
Confidence 7776543
No 408
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=77.96 E-value=29 Score=34.82 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCCCCEEEEECCCcc----hHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 295 LMKGAVVMDIGCGTG----ILSLFAAQA--GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG----~lsl~~a~a--Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
-.+-+.++++.|+-| .+++.+|.. |. +++.|-..+......++.+...++. +.++|+.|+
T Consensus 39 G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgG-R~vCIvp~~~~~~~~~~~l~~~~~~-------------~~vEfvvg~ 104 (218)
T PF07279_consen 39 GWNAKLIVEAWSSGGAISTTIALAAAARQTGG-RHVCIVPDEQSLSEYKKALGEAGLS-------------DVVEFVVGE 104 (218)
T ss_pred cccceEEEEEecCCCchHhHHHHHHHHHhcCC-eEEEEcCChhhHHHHHHHHhhcccc-------------ccceEEecC
Confidence 455678888866533 233333322 44 7888888777666777888777776 778999888
Q ss_pred c-cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 369 V-EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 369 ~-e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
. +++. ..-..+|.++..+ - .+.....+|..+. +.|.|.++
T Consensus 105 ~~e~~~----~~~~~iDF~vVDc---~--~~d~~~~vl~~~~--~~~~GaVV 145 (218)
T PF07279_consen 105 APEEVM----PGLKGIDFVVVDC---K--REDFAARVLRAAK--LSPRGAVV 145 (218)
T ss_pred CHHHHH----hhccCCCEEEEeC---C--chhHHHHHHHHhc--cCCCceEE
Confidence 4 4443 1235799998543 1 1222225666543 55667666
No 409
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.96 E-value=21 Score=37.29 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=62.5
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhC-------CCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------DFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~n-------gl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
++|.-||+|+ | .++..++++|. .|+..|.++..++.+.+.+..+ +.-. ... ......++++. .+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~---~~~-~~~~~~~i~~~-~~~ 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKIS---EEA-RAAALARISTA-TDL 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC---HHH-HHHHHhCeEee-CCH
Confidence 5789999997 3 46777778887 8999999998887765543322 1100 000 00000123322 232
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeeccee
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~ 425 (633)
+. + ...|+||.-. .........++..+...++|+.+++-++.++
T Consensus 79 ~~------~--~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 79 ED------L--ADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred HH------h--cCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 21 1 4689998522 1122335567778888899988776444443
No 410
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.87 E-value=6.8 Score=40.99 Aligned_cols=80 Identities=25% Similarity=0.261 Sum_probs=55.3
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..+++||-=||-+|+ ++..++++|+ +++-+-....-++...+.+++.+-. .++.++++|+.+.
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~-------------~~v~~~~~Dvs~~ 75 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSL-------------EKVLVLQLDVSDE 75 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCc-------------CccEEEeCccCCH
Confidence 478999999999995 7888888898 5555555555555554444444432 3699999999987
Q ss_pred cccc------ccCCCcccEEEEe
Q 006731 373 GESM------QIQPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~------~l~~~~~DvIvse 389 (633)
..-. ...-+.+|++|.+
T Consensus 76 ~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 76 ESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred HHHHHHHHHHHHhcCCCCEEEec
Confidence 5321 0124789999987
No 411
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=77.48 E-value=8.9 Score=38.33 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=28.3
Q ss_pred CCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCC
Q 006731 297 KGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEAS 329 (633)
Q Consensus 297 ~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S 329 (633)
+..+|+-||||. | .++..++++|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999995 4 57888899999999999988
No 412
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=77.42 E-value=14 Score=37.62 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=34.3
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
....++.+||-.|+|. |..+..+|++ |+++|++++.++...+.+++
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 3467889999999876 6666666666 77559999998877655554
No 413
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.22 E-value=19 Score=37.72 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCc-ch-HHHHHHHcCCCeEEEEeCCHHHHH
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAA 334 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGt-G~-lsl~~a~aGa~~V~aVD~S~~~~~ 334 (633)
+..+|.......++++||-||||- |. ....+++.|+++|+.++.+..-.+
T Consensus 114 ~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~ 165 (284)
T PRK12549 114 FAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAA 165 (284)
T ss_pred HHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 444554433335678999999994 33 344445569889999999875443
No 414
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.19 E-value=8.7 Score=41.06 Aligned_cols=99 Identities=24% Similarity=0.287 Sum_probs=58.1
Q ss_pred CCCCCCCCEEEEECCCc--chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 292 NPSLMKGAVVMDIGCGT--GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 292 ~~~~~~~~~VLDVGcGt--G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
...+.+|.+||-.|+.. |.++..+|++ |+ .++++-.++.-.+.+ ++.|-+ ..|.+...+
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~----~~lGAd-------------~vi~y~~~~ 198 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELL----KELGAD-------------HVINYREED 198 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHH----HhcCCC-------------EEEcCCccc
Confidence 34566799999999654 5778888887 77 677766666444333 344543 334433333
Q ss_pred ccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+.+-.... .....+|+|+-. +| ...+....+.|+++|.++
T Consensus 199 ~~~~v~~~-t~g~gvDvv~D~-vG---------~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 199 FVEQVREL-TGGKGVDVVLDT-VG---------GDTFAASLAALAPGGRLV 238 (326)
T ss_pred HHHHHHHH-cCCCCceEEEEC-CC---------HHHHHHHHHHhccCCEEE
Confidence 32221000 123479999952 21 223444567889999988
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.12 E-value=17 Score=37.96 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=33.8
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAK 341 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~ 341 (633)
++|.-||+|+ | .++..++++|. +|+.+|.++..++.+++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 5789999997 4 57777788887 89999999998877766544
No 416
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=77.07 E-value=17 Score=37.88 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccc
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e 370 (633)
....++.+||-.|+|. |.+...++++ |+ +|+++..++...+.+++ .|.. .+... .
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~----~g~~--------------~~~~~----~ 207 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARR----LGVE--------------TVLPD----E 207 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----cCCc--------------EEeCc----c
Confidence 3466789999998764 5555555555 77 59999999877766654 3432 11111 1
Q ss_pred ccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 371 ~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.. .+...+|+++.- .| . ...+....+.|+++|.++
T Consensus 208 ~~-----~~~~~~d~vid~-~g----~----~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 208 AE-----SEGGGFDVVVEA-TG----S----PSGLELALRLVRPRGTVV 242 (319)
T ss_pred cc-----ccCCCCCEEEEC-CC----C----hHHHHHHHHHhhcCCEEE
Confidence 11 134579999852 11 1 123344556789999888
No 417
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.05 E-value=6.1 Score=41.77 Aligned_cols=95 Identities=23% Similarity=0.328 Sum_probs=55.9
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc--
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-- 369 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~-- 369 (633)
...++.+||-.|||. |.+...+|++ |++.|++++.++...+.+++ .|.. .++...-
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~----------------~v~~~~~~~ 224 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT----------------DIVAERGEE 224 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----------------eEecCCccc
Confidence 456788888888875 6666667776 87779999988755444443 2321 1122111
Q ss_pred --cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 370 --EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 370 --e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+.+... .+...+|+++.. .+. ...+....+.|+++|.++
T Consensus 225 ~~~~i~~~--~~~~~~d~il~~-~g~--------~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 225 AVARVREL--TGGVGADAVLEC-VGT--------QESMEQAIAIARPGGRVG 265 (345)
T ss_pred HHHHHHHh--cCCCCCCEEEEC-CCC--------HHHHHHHHHhhccCCEEE
Confidence 111100 123469999842 211 234556677889999987
No 418
>PHA00733 hypothetical protein
Probab=77.04 E-value=4.7 Score=37.05 Aligned_cols=53 Identities=25% Similarity=0.487 Sum_probs=38.5
Q ss_pred CCceeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhcccccccccCCccCCHHHHHHHHHHh
Q 006731 45 SGFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHLHEA 124 (633)
Q Consensus 45 ~~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~~~~~C~~C~~~~~~~~~~~~Hm~~~ 124 (633)
.+..|--|+..|++...+..|+.. | .....|..|++.|.....+..|+.++
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~-h----------------------------~~~~~C~~CgK~F~~~~sL~~H~~~~ 122 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRY-T----------------------------EHSKVCPVCGKEFRNTDSTLDHVCKK 122 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhc-C----------------------------CcCccCCCCCCccCCHHHHHHHHHHh
Confidence 356677777777777777677652 1 11247999999999989999999887
Q ss_pred cc
Q 006731 125 YN 126 (633)
Q Consensus 125 ~~ 126 (633)
++
T Consensus 123 h~ 124 (128)
T PHA00733 123 HN 124 (128)
T ss_pred cC
Confidence 64
No 419
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.90 E-value=3 Score=46.05 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred CCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHH-------------------HHHHHHHHHhCCCCCCCCCCCC
Q 006731 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKM-------------------AAVATQIAKDNDFWWDRPQSEG 354 (633)
Q Consensus 297 ~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~-------------------~~~A~~~~~~ngl~~~~~~~~~ 354 (633)
++.+||-|||| |+ |..-+|..|..+|..||....- +.+|++.++.-.-.
T Consensus 11 ~~~riLvVGaG-GIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn-------- 81 (603)
T KOG2013|consen 11 KSGRILVVGAG-GIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPN-------- 81 (603)
T ss_pred ccCeEEEEecC-cccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCC--------
Confidence 67899999999 54 5555666788888888764321 12444444433322
Q ss_pred CCCCCCcEEEEEccccccccccccCCCcccEEEE
Q 006731 355 NINNAGKMEVVQGMVEELGESMQIQPHSVDVLVS 388 (633)
Q Consensus 355 ~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvs 388 (633)
-++..+++++.+..-...+ -++||+|+.
T Consensus 82 -----~~l~~yhanI~e~~fnv~f-f~qfdiV~N 109 (603)
T KOG2013|consen 82 -----IKLVPYHANIKEPKFNVEF-FRQFDIVLN 109 (603)
T ss_pred -----CceEeccccccCcchHHHH-HHHHHHHHH
Confidence 5688889998876411112 256888874
No 420
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.72 E-value=13 Score=44.12 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=68.9
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhC-------C-CCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------D-FWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~n-------g-l~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
++|--||+|+ | .++..+|.+|. .|+.+|.++..++.+++.+..+ | +. + ........+|++. .+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~----~-~~~~~~~~~i~~~-~~ 386 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRIT----P-AKMAGVLNGITPT-LS 386 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----h-hhHHHHHhCeEEe-CC
Confidence 5799999998 3 57778888898 9999999999988877665421 1 10 0 0000001233332 11
Q ss_pred ccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
... -..+|+||= .+ ......-..++.++.++++|+.++.-++.++.+
T Consensus 387 ~~~--------~~~aDlViE-av---~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i 433 (714)
T TIGR02437 387 YAG--------FDNVDIVVE-AV---VENPKVKAAVLAEVEQHVREDAILASNTSTISI 433 (714)
T ss_pred HHH--------hcCCCEEEE-cC---cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 111 246999983 22 222344568999999999999888765555433
No 421
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=76.69 E-value=5.6 Score=41.98 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc-c
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV-E 370 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~-e 370 (633)
.+.++.+||..|+|. |..+..+|++ |+ +|+++..++...+.+++ .+.. ..+.....+. +
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~-------------~v~~~~~~~~~~ 217 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGAD-------------DTINVGDEDVAA 217 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCC-------------EEecCcccCHHH
Confidence 456788999998874 6666677776 76 79999888776655543 2221 1111111111 1
Q ss_pred ccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEE
Q 006731 371 ELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 371 ~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
.+.. ..+...+|+++... + . ...+....+.|+++|.++
T Consensus 218 ~l~~--~~~~~~vd~vld~~-g----~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 218 RLRE--LTDGEGADVVIDAT-G----N----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred HHHH--HhCCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEE
Confidence 1110 02335699998631 1 1 123455667889999887
No 422
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=76.61 E-value=6.4 Score=42.36 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=35.0
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
...+|.+||-.|+|. |.++..+|++ |+++|++++.++...+.|++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 457899999999875 6676667766 77789999999877766643
No 423
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=76.45 E-value=6.2 Score=41.99 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
...++.+||-.|+|. |..+..+|++ |+..|++++.++...+.+.
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 216 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR 216 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH
Confidence 456788888877764 6666666666 8878999999886654443
No 424
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.35 E-value=23 Score=35.29 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCH-HHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASE-KMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~-~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
.++++||-.|++.|+ ++..+++.|. +|+++..+. ...+.....++..+ .++.++.+|+.+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~---------------~~~~~~~~D~~~ 67 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG---------------GRASAVGADLTD 67 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC---------------CceEEEEcCCCC
Confidence 467899999986553 4444555687 788887653 22222222233222 457888888876
Q ss_pred ccccccc------CCCcccEEEEecccccc----------cChhhHHHHHHHHhhcccCCcEEE
Q 006731 372 LGESMQI------QPHSVDVLVSEWMGYCL----------LYESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 372 l~~~~~l------~~~~~DvIvse~mg~~L----------~~e~~l~~vl~a~~r~LkpgG~li 419 (633)
......+ ..+.+|+||...-.... .+-...-.++.++.+.++.+|.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv 131 (248)
T PRK07806 68 EESVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVV 131 (248)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEE
Confidence 5421000 01368988865311100 000112345666666666666555
No 425
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=76.27 E-value=16 Score=38.33 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEECCCc-ch-HHHHHHHcCCCeEEEEeCCHHH
Q 006731 284 SYRQAILENPSLMKGAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKM 332 (633)
Q Consensus 284 ~y~~aI~~~~~~~~~~~VLDVGcGt-G~-lsl~~a~aGa~~V~aVD~S~~~ 332 (633)
.|...+.......++++||-+|+|- |. ....+++.|+++|+.++.+..-
T Consensus 113 Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k 163 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR 163 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence 3455555433335678999999994 22 3334456799899999988653
No 426
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=76.25 E-value=13 Score=37.42 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.5
Q ss_pred CCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeC
Q 006731 296 MKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEA 328 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~ 328 (633)
....+|+-||||. | ..+..++++|.++++.+|.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3568999999994 3 5778888889999998854
No 427
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=76.17 E-value=4 Score=41.79 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=33.9
Q ss_pred CCEEEEECCCcchHHHHHHHc-C--------CCeEEEEeCCHHHHHHHHHHHHh
Q 006731 298 GAVVMDIGCGTGILSLFAAQA-G--------ASRVIAVEASEKMAAVATQIAKD 342 (633)
Q Consensus 298 ~~~VLDVGcGtG~lsl~~a~a-G--------a~~V~aVD~S~~~~~~A~~~~~~ 342 (633)
.-+|+++|+|+|.|+.-+.+. . ..+++.||.|+.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999998888775 1 23899999999998777766654
No 428
>PRK13699 putative methylase; Provisional
Probab=76.08 E-value=3.4 Score=41.83 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=39.3
Q ss_pred EEEEEccccccccccccCCCcccEEEEeccccccc-------------ChhhHHHHHHHHhhcccCCcEEE
Q 006731 362 MEVVQGMVEELGESMQIQPHSVDVLVSEWMGYCLL-------------YESMLSSVLFARDQWLKPGGAIL 419 (633)
Q Consensus 362 I~vi~gd~e~l~~~~~l~~~~~DvIvse~mg~~L~-------------~e~~l~~vl~a~~r~LkpgG~li 419 (633)
+++++||..++-.. +|++++|+||..+. |.+. +..-+..++.++.|+|||||.++
T Consensus 2 ~~l~~gD~le~l~~--lpd~SVDLIiTDPP-Y~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMAR--FPDNAVDFILTDPP-YLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHh--CCccccceEEeCCC-cccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 36788888776322 78899999999852 3321 11234678899999999999887
No 429
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.03 E-value=13 Score=37.53 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..++...+.+...+.. .++.++.+|+.+.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~ 70 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAG-------------ARVLAVPADVTDA 70 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCC-------------ceEEEEEccCCCH
Confidence 467899999998763 5566667788 7999999887665555554432222 5688899988764
Q ss_pred cccccc------CCCcccEEEEe
Q 006731 373 GESMQI------QPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~~l------~~~~~DvIvse 389 (633)
.....+ ..+++|++|..
T Consensus 71 ~~~~~~~~~~~~~~g~id~li~~ 93 (260)
T PRK07063 71 ASVAAAVAAAEEAFGPLDVLVNN 93 (260)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEC
Confidence 311000 12478999975
No 430
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.93 E-value=11 Score=37.93 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 298 GAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 298 ~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
+++||-.|++.|+ ++..+++.|+ +|+++..++......+......+ .++.++.+|+.+...
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~~~ 65 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG---------------LALRVEKLDLTDAID 65 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcceEEEeeCCCHHH
Confidence 4689999987553 3444556687 89998887765444444333332 357888888876432
Q ss_pred ccccCCCcccEEEEe
Q 006731 375 SMQIQPHSVDVLVSE 389 (633)
Q Consensus 375 ~~~l~~~~~DvIvse 389 (633)
.......++|+||..
T Consensus 66 ~~~~~~~~id~vi~~ 80 (257)
T PRK09291 66 RAQAAEWDVDVLLNN 80 (257)
T ss_pred HHHHhcCCCCEEEEC
Confidence 111112479999975
No 431
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=75.78 E-value=16 Score=38.46 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHHHHhCCCCCCCCEEEEECCCcchHH--HHHHHcCCCeEEEEeCCHHHHHHHHHHH
Q 006731 285 YRQAILENPSLMKGAVVMDIGCGTGILS--LFAAQAGASRVIAVEASEKMAAVATQIA 340 (633)
Q Consensus 285 y~~aI~~~~~~~~~~~VLDVGcGtG~ls--l~~a~aGa~~V~aVD~S~~~~~~A~~~~ 340 (633)
+..+|.......++++||-+|||--.-+ ..++..|+++|+.++.++...+.|++.+
T Consensus 111 f~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la 168 (288)
T PRK12749 111 HIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFA 168 (288)
T ss_pred HHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHH
Confidence 4455554333457789999999942222 3345569899999999854333444443
No 432
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.63 E-value=12 Score=37.37 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
..++++||-.|++.|+ ++..+++.|+ +|++++.++...+...+.++..+. .++.++.+|+..
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~--------------~~~~~~~~d~~~ 73 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGG--------------PQPAIIPLDLLT 73 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCC--------------CCceEEEecccC
Confidence 4578999999976542 3444556687 899999988665444444443332 456777777642
Q ss_pred ccc--------ccccCCCcccEEEEe
Q 006731 372 LGE--------SMQIQPHSVDVLVSE 389 (633)
Q Consensus 372 l~~--------~~~l~~~~~DvIvse 389 (633)
... ...-..+++|+||..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~id~vi~~ 99 (247)
T PRK08945 74 ATPQNYQQLADTIEEQFGRLDGVLHN 99 (247)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 110 000012468999875
No 433
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=75.61 E-value=7.4 Score=41.75 Aligned_cols=45 Identities=36% Similarity=0.575 Sum_probs=32.1
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
....++.+||-.|+|. |..+..++++ |+.+|++++.++...+.++
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~ 224 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR 224 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 3456788999998763 6666666665 7766999998887665543
No 434
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.46 E-value=13 Score=39.25 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
..++++||-.|++.|+ ++..+++.|+ +|+.+..+..-.+.+.+.+....-. .++.++..|+.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~-------------~~v~~~~~Dl~d 76 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPD-------------AKLSLRALDLSS 76 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCC-------------CceEEEEecCCC
Confidence 3568999999998774 5556667787 8999888876554444444332111 468889999877
Q ss_pred cccccc------cCCCcccEEEEe
Q 006731 372 LGESMQ------IQPHSVDVLVSE 389 (633)
Q Consensus 372 l~~~~~------l~~~~~DvIvse 389 (633)
...-.. -..+++|++|.+
T Consensus 77 ~~sv~~~~~~~~~~~~~iD~li~n 100 (313)
T PRK05854 77 LASVAALGEQLRAEGRPIHLLINN 100 (313)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEC
Confidence 542110 012578999976
No 435
>PHA00732 hypothetical protein
Probab=75.31 E-value=3.3 Score=34.78 Aligned_cols=44 Identities=25% Similarity=0.501 Sum_probs=35.0
Q ss_pred CceeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhcccccccccCCccCCHHHHHHHH
Q 006731 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQVAENRCWICGLTCQSNQDLQNHL 121 (633)
Q Consensus 46 ~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~~~~~C~~C~~~~~~~~~~~~Hm 121 (633)
|..|-.|++.|.+...+-.||+..|. . .+|..||+.|.. +..|+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---------------------~--------~~C~~CgKsF~~---l~~H~ 44 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---------------------L--------TKCPVCNKSYRR---LNQHF 44 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---------------------C--------CccCCCCCEeCC---hhhhh
Confidence 35699999999999999999986653 0 159999999874 66676
No 436
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.11 E-value=9.4 Score=36.88 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.6
Q ss_pred EEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCH
Q 006731 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASE 330 (633)
Q Consensus 300 ~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~ 330 (633)
+|+-||||. | ..+..++++|..+++.+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999995 4 477888899999999999874
No 437
>PRK08339 short chain dehydrogenase; Provisional
Probab=75.10 E-value=14 Score=37.77 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.+.... . .++.++.+|+.+.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~-------------~~~~~~~~Dv~~~ 70 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-N-------------VDVSYIVADLTKR 70 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-C-------------CceEEEEecCCCH
Confidence 468999999998774 5666777798 89999998766555544443221 1 4688889988765
Q ss_pred ccccc-----cCCCcccEEEEe
Q 006731 373 GESMQ-----IQPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~~-----l~~~~~DvIvse 389 (633)
..... ...+++|++|..
T Consensus 71 ~~i~~~~~~~~~~g~iD~lv~n 92 (263)
T PRK08339 71 EDLERTVKELKNIGEPDIFFFS 92 (263)
T ss_pred HHHHHHHHHHHhhCCCcEEEEC
Confidence 31100 012468999875
No 438
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=75.00 E-value=9.1 Score=40.43 Aligned_cols=43 Identities=42% Similarity=0.610 Sum_probs=31.3
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVA 336 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A 336 (633)
...++.+||..|+|. |.+...+|++ |+..|+++..++...+.+
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA 200 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 456788999998765 6666666665 775599999887665444
No 439
>PRK05867 short chain dehydrogenase; Provisional
Probab=74.85 E-value=13 Score=37.32 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=52.3
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..++...+.++..+ .++.++.+|+.+.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~D~~~~ 70 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG---------------GKVVPVCCDVSQH 70 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---------------CeEEEEEccCCCH
Confidence 468999999998764 5666677788 89999998776655544444332 4577888888764
Q ss_pred cccccc------CCCcccEEEEec
Q 006731 373 GESMQI------QPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~l------~~~~~DvIvse~ 390 (633)
.....+ ..+++|++|...
T Consensus 71 ~~~~~~~~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 71 QQVTSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 311000 114799999753
No 440
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=74.79 E-value=7.8 Score=41.70 Aligned_cols=46 Identities=30% Similarity=0.504 Sum_probs=35.3
Q ss_pred CCCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 293 PSLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 293 ~~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
..+.++.+||-.|+|. |.++..+|++ |+.+|++++.++...+.|++
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3467889999999875 6666666766 87789999999877766643
No 441
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.74 E-value=28 Score=36.35 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=32.8
Q ss_pred CCCCCCEEEEECCC-cchHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCG-TGILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 294 ~~~~~~~VLDVGcG-tG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
...++.+||-+|+| .|..+..++++ |+ +|+++..++...+.++
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 45778899999997 47666666776 76 8999999887765553
No 442
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=74.57 E-value=2 Score=36.66 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=25.6
Q ss_pred CceeecCCCCCCCHHHHHHHhhhhcCcchh
Q 006731 46 GFLCLFCDAGYSSCDTLFEHCRLSHCFDFH 75 (633)
Q Consensus 46 ~~~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~ 75 (633)
...|.+|...|.+...+..||+..|...+.
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~ 79 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN 79 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence 589999999999999999999999887664
No 443
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.51 E-value=15 Score=36.94 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|++++.++.-+..+.+.+...+ .++.++.+|+.+.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 68 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG---------------GEALFVACDVTRD 68 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEcCCCCH
Confidence 467899999987664 4555666787 79999998876555444444322 5688899988764
Q ss_pred cccccc------CCCcccEEEEec
Q 006731 373 GESMQI------QPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~l------~~~~~DvIvse~ 390 (633)
..-..+ ..+++|+||...
T Consensus 69 ~~i~~~~~~~~~~~g~id~li~~a 92 (253)
T PRK06172 69 AEVKALVEQTIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECC
Confidence 310000 014689999763
No 444
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=74.17 E-value=7.2 Score=41.28 Aligned_cols=43 Identities=28% Similarity=0.447 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Q 006731 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVATQ 338 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~ 338 (633)
.+|.+||-.|+|. |..+..+|++ |+++|++++.++...+.+++
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 206 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 4688888888765 6666666665 77678899878766655443
No 445
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.97 E-value=10 Score=40.46 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=52.9
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..++...+.++..+ ..+.++..|+.+.
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g---------------~~~~~~~~Dv~d~ 68 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG---------------AEVLVVPTDVTDA 68 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---------------CcEEEEEeeCCCH
Confidence 467899999998764 5556667788 79999998877665555555433 4577788888754
Q ss_pred cccccc------CCCcccEEEEec
Q 006731 373 GESMQI------QPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~l------~~~~~DvIvse~ 390 (633)
.....+ ..+++|++|.+.
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnA 92 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNV 92 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 311000 125799999763
No 446
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.96 E-value=13 Score=34.46 Aligned_cols=76 Identities=22% Similarity=0.241 Sum_probs=51.3
Q ss_pred CEEEEECCCcch---HHHHHHHcCCCeEEEEeCC--HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 299 AVVMDIGCGTGI---LSLFAAQAGASRVIAVEAS--EKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 299 ~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S--~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
|+||-.|+++|+ ++..+++.|+.+|+.+..+ ....+.....++..+ .++++++.|+.+..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---------------~~~~~~~~D~~~~~ 65 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---------------AKITFIECDLSDPE 65 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---------------SEEEEEESETTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---------------cccccccccccccc
Confidence 578999999774 6667777788899999998 444444444444333 67999999987643
Q ss_pred cc------cccCCCcccEEEEe
Q 006731 374 ES------MQIQPHSVDVLVSE 389 (633)
Q Consensus 374 ~~------~~l~~~~~DvIvse 389 (633)
.- .....+++|++|..
T Consensus 66 ~~~~~~~~~~~~~~~ld~li~~ 87 (167)
T PF00106_consen 66 SIRALIEEVIKRFGPLDILINN 87 (167)
T ss_dssp HHHHHHHHHHHHHSSESEEEEE
T ss_pred cccccccccccccccccccccc
Confidence 10 00123689999976
No 447
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=73.91 E-value=1.7 Score=38.79 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=27.8
Q ss_pred cccEEEEe----cccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 382 SVDVLVSE----WMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 382 ~~DvIvse----~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+||+|+|- |+ |.-.+..-+..++..+...|+|||.+|.
T Consensus 1 ~yDvilclSVtkWI-HLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWI-HLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHH-HHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEE-EecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 48999985 33 2122344578899999999999999993
No 448
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=73.89 E-value=3.2 Score=46.14 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCcchHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEc--ccccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA-GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQG--MVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~g--d~e~l 372 (633)
..+..+|-||-|.|.|..++... +..+++||++.|.|++.|++.+....- .+.+|++-.| .+...
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~------------~r~~V~i~dGl~~~~~~ 361 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS------------DRNKVHIADGLDFLQRT 361 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh------------hhhhhhHhhchHHHHHH
Confidence 34578999999999998888766 556999999999999999987632110 0122222211 01111
Q ss_pred ccccccCCCcccEEEEeccc---cccc---ChhhHHHHHHHHhhcccCCcEEEe
Q 006731 373 GESMQIQPHSVDVLVSEWMG---YCLL---YESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~mg---~~L~---~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
.... -....||++....=+ +.+. .+-.-..++..+...|.|.|.++.
T Consensus 362 ~k~~-~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 362 AKSQ-QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred hhcc-ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 1100 124679999864311 1111 011135678888999999999973
No 449
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.78 E-value=10 Score=40.21 Aligned_cols=42 Identities=36% Similarity=0.589 Sum_probs=29.2
Q ss_pred CCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 296 MKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
.++.+||-.|+|. |.++..++++ |..+|++++.++.-...++
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~ 205 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK 205 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 5678888888765 6666666666 7657888877775554444
No 450
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.74 E-value=11 Score=40.64 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=28.5
Q ss_pred CCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCC
Q 006731 296 MKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEAS 329 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S 329 (633)
...++||-||||. | .++..++++|..+++.||.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3568999999994 4 47788889999999999986
No 451
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.72 E-value=23 Score=37.08 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=62.2
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHh-------CCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKD-------NDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~-------ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
.+|--||+|+ | .++..++++|. .|+..|.++..++.+++.+.. .|.-. .. .....-.++++ ..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~---~~-~~~~~~~~l~~-~~~~ 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLT---ER-ERDAALARLRF-TTDL 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCC---hh-hHHHHHhCeEe-eCCH
Confidence 4788999997 3 57777888898 899999999998887766432 11100 00 00000022332 2233
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcc-cCCcEEEeecc
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWL-KPGGAILPDTA 423 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~L-kpgG~lip~~~ 423 (633)
+. -..+|+|+-.. ......-..++..+.+++ +|+.++.-++.
T Consensus 80 ~~--------~~~~d~ViEav----~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 80 GD--------FADRQLVIEAV----VEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred HH--------hCCCCEEEEec----ccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 22 14689998532 223334456677777888 67766654443
No 452
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=73.50 E-value=13 Score=39.17 Aligned_cols=43 Identities=35% Similarity=0.465 Sum_probs=30.5
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
..++.+||-.|+|. |.+...+|++ |+.+|+++..++...+.++
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~ 209 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE 209 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Confidence 45789999999775 5555556665 6458999998886654443
No 453
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.25 E-value=9.3 Score=41.36 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCH
Q 006731 296 MKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASE 330 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~ 330 (633)
.++.+||-||||. | ..+..++++|.++++.+|...
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3568999999994 3 467888889999999998763
No 454
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=73.11 E-value=1.9 Score=41.24 Aligned_cols=42 Identities=21% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
-.++.+|+-+|.|. |.-+..+++. |+ +|+..|..+...+...
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~ 60 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLE 60 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhh
Confidence 34568999999997 6666666655 88 8999999987664443
No 455
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.11 E-value=12 Score=43.05 Aligned_cols=94 Identities=17% Similarity=0.067 Sum_probs=52.6
Q ss_pred HHHhCCCCCCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEE
Q 006731 288 AILENPSLMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEV 364 (633)
Q Consensus 288 aI~~~~~~~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~v 364 (633)
++-.......|++||-.|++.|+ +...+++.|+ +|+++..+...+....+.+...++.. .......++.+
T Consensus 70 ~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~------~Ga~~~~~v~i 142 (576)
T PLN03209 70 AIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDV------EGTQPVEKLEI 142 (576)
T ss_pred ccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhcccc------ccccccCceEE
Confidence 33344456788999999985332 3334455577 89999888765543333222211100 00000146889
Q ss_pred EEccccccccccccCCCcccEEEEe
Q 006731 365 VQGMVEELGESMQIQPHSVDVLVSE 389 (633)
Q Consensus 365 i~gd~e~l~~~~~l~~~~~DvIvse 389 (633)
+.+|+.+...... .-+.+|+||+.
T Consensus 143 V~gDLtD~esI~~-aLggiDiVVn~ 166 (576)
T PLN03209 143 VECDLEKPDQIGP-ALGNASVVICC 166 (576)
T ss_pred EEecCCCHHHHHH-HhcCCCEEEEc
Confidence 9999987542111 12568999875
No 456
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.11 E-value=30 Score=38.28 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=47.2
Q ss_pred CCCCEEEEECCCc-ch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 296 MKGAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G~-lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
...++|+-+|+|. |. ++..+.+.|. .|+.+|.++..++.+++.. ..+.++.||..+..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~-------------------~~~~~i~gd~~~~~ 288 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL-------------------PNTLVLHGDGTDQE 288 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC-------------------CCCeEEECCCCCHH
Confidence 4568899999975 32 3344444466 8999999998775554421 24667888886543
Q ss_pred cccccCCCcccEEEE
Q 006731 374 ESMQIQPHSVDVLVS 388 (633)
Q Consensus 374 ~~~~l~~~~~DvIvs 388 (633)
.-......++|+|++
T Consensus 289 ~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 289 LLEEEGIDEADAFIA 303 (453)
T ss_pred HHHhcCCccCCEEEE
Confidence 111123467999886
No 457
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.00 E-value=15 Score=42.80 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCEEEEECCCc-ch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 298 GAVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 298 ~~~VLDVGcGt-G~-lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
..+|+-+|+|. |. ++..+.+.|. .|+++|.++..++.+++ ....++.||..+..--
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~---------------------~g~~v~~GDat~~~~L 457 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRK---------------------FGMKVFYGDATRMDLL 457 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHh---------------------cCCeEEEEeCCCHHHH
Confidence 46899999997 64 4455555566 89999999998876654 2246799999876421
Q ss_pred cccCCCcccEEEE
Q 006731 376 MQIQPHSVDVLVS 388 (633)
Q Consensus 376 ~~l~~~~~DvIvs 388 (633)
....-+++|++|+
T Consensus 458 ~~agi~~A~~vvv 470 (621)
T PRK03562 458 ESAGAAKAEVLIN 470 (621)
T ss_pred HhcCCCcCCEEEE
Confidence 1123467898886
No 458
>PLN02256 arogenate dehydrogenase
Probab=72.96 E-value=24 Score=37.32 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=26.5
Q ss_pred CCCCCCEEEEECCCc--chHHHHHHHcCCCeEEEEeCCH
Q 006731 294 SLMKGAVVMDIGCGT--GILSLFAAQAGASRVIAVEASE 330 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt--G~lsl~~a~aGa~~V~aVD~S~ 330 (633)
...++.+|.-||+|. |.++..+.+.|. +|+++|.++
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~ 69 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD 69 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence 334667899999985 346666666675 899999986
No 459
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.91 E-value=17 Score=37.20 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=49.7
Q ss_pred CCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccc
Q 006731 297 KGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELG 373 (633)
Q Consensus 297 ~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~ 373 (633)
.+++||-.|++.|+ ++..+++.|+ +|++++.++...+...+.....+.. .++.++.+|+.+..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~d~~ 67 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQ-------------QNIKVQQLDVTDQN 67 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCC-------------CceeEEecCCCCHH
Confidence 45789999987553 4455566687 8999998876554444444433333 57889999987743
Q ss_pred ccccc-----CCCcccEEEEe
Q 006731 374 ESMQI-----QPHSVDVLVSE 389 (633)
Q Consensus 374 ~~~~l-----~~~~~DvIvse 389 (633)
....+ .-+++|+||..
T Consensus 68 ~~~~~~~~~~~~~~id~vv~~ 88 (280)
T PRK06914 68 SIHNFQLVLKEIGRIDLLVNN 88 (280)
T ss_pred HHHHHHHHHHhcCCeeEEEEC
Confidence 11000 11467998875
No 460
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.88 E-value=17 Score=36.52 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..+....+.++..+ .++.++.+|+.+.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~~~ 72 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG---------------GAAEALAFDIADE 72 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC---------------CceEEEEccCCCH
Confidence 578999999987653 4455566688 89999998765544444444333 4578888888764
Q ss_pred cccc------ccCCCcccEEEEe
Q 006731 373 GESM------QIQPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~------~l~~~~~DvIvse 389 (633)
.... .-..+++|+||..
T Consensus 73 ~~~~~~~~~~~~~~~~id~vi~~ 95 (256)
T PRK06124 73 EAVAAAFARIDAEHGRLDILVNN 95 (256)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC
Confidence 3100 0012468999875
No 461
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.57 E-value=19 Score=42.73 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=68.7
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhC-------C-CCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------D-FWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~n-------g-l~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
++|.-||+|+ | .++..+|.+|. .|+.+|.++..++.+++.+... | +. + ......-.+|++. .+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~----~-~~~~~~~~~i~~~-~~ 386 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKID----G-AKMAGVLSSIRPT-LD 386 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----h-hhHHHHHhCeEEe-CC
Confidence 5799999999 4 57888888898 9999999999988776655321 1 10 0 0000001234432 22
Q ss_pred ccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeE
Q 006731 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
... -...|+||= .+ ......-..++..+.++++|+.++.-++.++.
T Consensus 387 ~~~--------~~~aDlViE-av---~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 387 YAG--------FERVDVVVE-AV---VENPKVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred HHH--------hcCCCEEEe-cc---cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 221 146999883 22 22234456899999999999988875555543
No 462
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=72.19 E-value=8.5 Score=35.75 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=27.1
Q ss_pred EECCCcc--hHHHHHH--HcC-CCeEEEEeCCHHHHHHHHHH--HHhCCC
Q 006731 303 DIGCGTG--ILSLFAA--QAG-ASRVIAVEASEKMAAVATQI--AKDNDF 345 (633)
Q Consensus 303 DVGcGtG--~lsl~~a--~aG-a~~V~aVD~S~~~~~~A~~~--~~~ngl 345 (633)
|||++.| .....++ +.+ ..+|+++|.++..++..+++ +..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 8999999 4444333 333 35899999999999888888 655543
No 463
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=72.17 E-value=19 Score=38.49 Aligned_cols=93 Identities=26% Similarity=0.283 Sum_probs=56.9
Q ss_pred CCCCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 294 SLMKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
...++++|.-||.|. | ..+..+...|. +|++.+......+. +...|+ ++ .++.+
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~----A~~~G~-----------------~v--~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEV----AKADGF-----------------EV--MSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHH----HHHcCC-----------------EE--CCHHH
Confidence 356889999999997 5 35666666688 78777644333222 222232 22 24554
Q ss_pred cccccccCCCcccEEEEecccccccChhhHHHHH-HHHhhcccCCcEEEeecc
Q 006731 372 LGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVL-FARDQWLKPGGAILPDTA 423 (633)
Q Consensus 372 l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl-~a~~r~LkpgG~lip~~~ 423 (633)
+. ...|+|+.... .+.. ..++ ..+...|+||..++++..
T Consensus 68 aa-------k~ADVV~llLP-----d~~t-~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 68 AV-------RTAQVVQMLLP-----DEQQ-AHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred HH-------hcCCEEEEeCC-----ChHH-HHHHHHHHHhcCCCCCEEEECCC
Confidence 43 56899986322 2223 3444 467888999999887653
No 464
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.17 E-value=8.4 Score=42.01 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=27.6
Q ss_pred CCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCC
Q 006731 297 KGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEAS 329 (633)
Q Consensus 297 ~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S 329 (633)
++++||-+|||. | ..+..++++|.++++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999994 4 46788888999999999987
No 465
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=72.07 E-value=26 Score=36.40 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=53.3
Q ss_pred EEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 300 ~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
+|+-||+|. | .++..++++|. +|+.++.++..++.. ..+|+.. . .........-..+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~----~~~g~~~--------~--~~~~~~~~~~~~~~~---- 62 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDAL----NENGLRL--------E--DGEITVPVLAADDPA---- 62 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHH----HHcCCcc--------c--CCceeecccCCCChh----
Confidence 688999997 3 56777777786 899999876554332 2334420 0 011110000011111
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
....+|+|+.-.-. ..+..++..+..++.++..+++
T Consensus 63 -~~~~~d~vila~k~------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 63 -ELGPQDLVILAVKA------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred -HcCCCCEEEEeccc------ccHHHHHHHHhhhcCCCCEEEE
Confidence 12579999863211 2356677777778877766663
No 466
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.01 E-value=9.9 Score=34.98 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=44.4
Q ss_pred CCCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..++++||-||+|- | .....++..|+++|+.+..+..-+ ++.+...+- ..+.++.. .++
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra---~~l~~~~~~--------------~~~~~~~~--~~~ 69 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERA---EALAEEFGG--------------VNIEAIPL--EDL 69 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHH---HHHHHHHTG--------------CSEEEEEG--GGH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHH---HHHHHHcCc--------------cccceeeH--HHH
Confidence 46789999999984 3 344455556998999999987543 333322211 34555543 333
Q ss_pred ccccccCCCcccEEEEe
Q 006731 373 GESMQIQPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse 389 (633)
.. -...+|+||+-
T Consensus 70 ~~----~~~~~DivI~a 82 (135)
T PF01488_consen 70 EE----ALQEADIVINA 82 (135)
T ss_dssp CH----HHHTESEEEE-
T ss_pred HH----HHhhCCeEEEe
Confidence 21 12579999985
No 467
>PRK07035 short chain dehydrogenase; Provisional
Probab=71.98 E-value=18 Score=36.20 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|++++.++...+...+.+...+ .++.+++.|+.+.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 69 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG---------------GKAEALACHIGEM 69 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CeEEEEEcCCCCH
Confidence 567899999999874 5556666788 89999998765555444444322 4567788888654
Q ss_pred cccccc------CCCcccEEEEec
Q 006731 373 GESMQI------QPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~l------~~~~~DvIvse~ 390 (633)
.....+ ..+++|+||...
T Consensus 70 ~~~~~~~~~~~~~~~~id~li~~a 93 (252)
T PRK07035 70 EQIDALFAHIRERHGRLDILVNNA 93 (252)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 311000 014689999653
No 468
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=71.84 E-value=26 Score=37.15 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=27.9
Q ss_pred CCCCEEEEECCCc-chHHHHHHH-cCCCeEEEEeCCHHH
Q 006731 296 MKGAVVMDIGCGT-GILSLFAAQ-AGASRVIAVEASEKM 332 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G~lsl~~a~-aGa~~V~aVD~S~~~ 332 (633)
.++++|+-||+|. |.+....++ .|+.+|+.++.++..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~r 214 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYER 214 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 5789999999986 655444443 477899999998753
No 469
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=71.66 E-value=2.2 Score=27.50 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=18.4
Q ss_pred cccccCCccCCHHHHHHHHH
Q 006731 103 RCWICGLTCQSNQDLQNHLH 122 (633)
Q Consensus 103 ~C~~C~~~~~~~~~~~~Hm~ 122 (633)
+|-.|++.|.+..++..||+
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~ 22 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKR 22 (27)
T ss_dssp EETTTTEEESSHHHHHHHHC
T ss_pred CCCccCCccCChhHHHHHhH
Confidence 59999999999999999995
No 470
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=71.42 E-value=2.2 Score=42.30 Aligned_cols=24 Identities=33% Similarity=0.995 Sum_probs=21.7
Q ss_pred CCCceeecCCCCCCCHHHHHHHhh
Q 006731 44 ESGFLCLFCDAGYSSCDTLFEHCR 67 (633)
Q Consensus 44 ~~~~~CLFC~~~~~~~~~~l~Hm~ 67 (633)
.....|+||...|.+.+++++||-
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehCP 260 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHCP 260 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhCC
Confidence 456899999999999999999995
No 471
>PRK08862 short chain dehydrogenase; Provisional
Probab=71.40 E-value=17 Score=36.35 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.+++++|-.|++.|+ ++..+++.|+ +|+.+..++..++.+.+.++..+ ..+..+..|+.+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~---------------~~~~~~~~D~~~~ 66 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT---------------DNVYSFQLKDFSQ 66 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---------------CCeEEEEccCCCH
Confidence 467899999999985 6777778898 79999988877665555554433 3455666666553
Q ss_pred cccccc------CCC-cccEEEEec
Q 006731 373 GESMQI------QPH-SVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~l------~~~-~~DvIvse~ 390 (633)
.....+ .-+ ++|++|.+.
T Consensus 67 ~~~~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 67 ESIRHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECC
Confidence 311000 013 799999875
No 472
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=71.34 E-value=37 Score=35.69 Aligned_cols=44 Identities=36% Similarity=0.603 Sum_probs=29.8
Q ss_pred CCCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 294 SLMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 294 ~~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
...++.+||-.|+|. |.+...+|++ |+.+|++++.++.-...++
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~ 209 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAA 209 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence 356788999988764 5555555555 7668999987775554444
No 473
>smart00355 ZnF_C2H2 zinc finger.
Probab=71.06 E-value=3.6 Score=25.41 Aligned_cols=20 Identities=35% Similarity=0.732 Sum_probs=0.0
Q ss_pred cccccCCccCCHHHHHHHHH
Q 006731 103 RCWICGLTCQSNQDLQNHLH 122 (633)
Q Consensus 103 ~C~~C~~~~~~~~~~~~Hm~ 122 (633)
.|..|+..|.....++.||.
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 2 RCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCcchhCCHHHHHHHHH
No 474
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=70.86 E-value=28 Score=36.47 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=43.5
Q ss_pred CCCEEEEECCCcchHHHHH----HHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 297 KGAVVMDIGCGTGILSLFA----AQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 297 ~~~~VLDVGcGtG~lsl~~----a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.+++||-.|+. |.++..+ ++.|. +|+++..++.............+.. .+++++.+|+.+.
T Consensus 4 ~~k~vlVtG~~-G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~d~ 68 (325)
T PLN02989 4 GGKVVCVTGAS-GYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAK-------------ERLKLFKADLLDE 68 (325)
T ss_pred CCCEEEEECCc-hHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCC-------------CceEEEeCCCCCc
Confidence 46899999954 5544444 44577 7877766554322222222212222 5688999999875
Q ss_pred ccccccCCCcccEEEEe
Q 006731 373 GESMQIQPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse 389 (633)
.....+ -..+|+||..
T Consensus 69 ~~~~~~-~~~~d~vih~ 84 (325)
T PLN02989 69 GSFELA-IDGCETVFHT 84 (325)
T ss_pred hHHHHH-HcCCCEEEEe
Confidence 421111 1358999875
No 475
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.61 E-value=28 Score=36.63 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=31.5
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQI 339 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~ 339 (633)
++|.-||+|. | .++..++++|. +|+++|.++..++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 5788899997 3 56677777787 899999999887777654
No 476
>PRK07062 short chain dehydrogenase; Provisional
Probab=70.60 E-value=20 Score=36.30 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.+++++|-.|++.|+ ++..+++.|+ +|++++.++..++.+.+.+....-. .++.++..|+.+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~ 71 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPG-------------ARLLAARCDVLDE 71 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCC-------------ceEEEEEecCCCH
Confidence 468999999998764 5556666788 7999999886655544444332111 3677888888765
Q ss_pred ccccc------cCCCcccEEEEe
Q 006731 373 GESMQ------IQPHSVDVLVSE 389 (633)
Q Consensus 373 ~~~~~------l~~~~~DvIvse 389 (633)
..... -..+++|++|..
T Consensus 72 ~~v~~~~~~~~~~~g~id~li~~ 94 (265)
T PRK07062 72 ADVAAFAAAVEARFGGVDMLVNN 94 (265)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC
Confidence 31100 012568999875
No 477
>PRK05876 short chain dehydrogenase; Provisional
Probab=70.26 E-value=20 Score=36.87 Aligned_cols=79 Identities=22% Similarity=0.150 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
+++++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.++..+ .++.++..|+.+.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~---------------~~~~~~~~Dv~d~ 67 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG---------------FDVHGVMCDVRHR 67 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CeEEEEeCCCCCH
Confidence 568899999998764 4555666788 79999988765554444444332 4578888888764
Q ss_pred cccccc------CCCcccEEEEec
Q 006731 373 GESMQI------QPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~l------~~~~~DvIvse~ 390 (633)
..-..+ ..+++|++|.+.
T Consensus 68 ~~v~~~~~~~~~~~g~id~li~nA 91 (275)
T PRK05876 68 EEVTHLADEAFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 311000 124689999753
No 478
>PRK07677 short chain dehydrogenase; Provisional
Probab=70.18 E-value=19 Score=36.11 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=49.6
Q ss_pred CCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccc
Q 006731 298 GAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGE 374 (633)
Q Consensus 298 ~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~ 374 (633)
++++|-.|++.|+ ++..+++.|+ +|++++.++...+.+.+.+...+ .++.++.+|+.+...
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~~~ 64 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP---------------GQVLTVQMDVRNPED 64 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEEecCCCHHH
Confidence 4789999998763 4555666788 89999988766555544443322 568888888865321
Q ss_pred ccc------cCCCcccEEEEec
Q 006731 375 SMQ------IQPHSVDVLVSEW 390 (633)
Q Consensus 375 ~~~------l~~~~~DvIvse~ 390 (633)
... -..+++|+||...
T Consensus 65 ~~~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 65 VQKMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHHHHhCCccEEEECC
Confidence 000 0114689999754
No 479
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=69.99 E-value=17 Score=43.40 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=69.4
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhC-------C-CCCCCCCCCCCCCCCCcEEEEEcc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDN-------D-FWWDRPQSEGNINNAGKMEVVQGM 368 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~n-------g-l~~~~~~~~~~~~~~~~I~vi~gd 368 (633)
++|--||+|+ | .++..++.+|. .|+.+|.++..++.+.+.+..+ | +.. ........+|++. .+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~-----~~~~~~~~~i~~~-~~ 408 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITS-----LERDSILSNLTPT-LD 408 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHhCeEEe-CC
Confidence 5799999998 3 57777888898 8999999999988877766432 1 100 0000001233322 12
Q ss_pred ccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeEE
Q 006731 369 VEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMFV 427 (633)
Q Consensus 369 ~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~~ 427 (633)
... + ...|+||= .+ ......-..++..+.++++|+.++.-++.++.+
T Consensus 409 ~~~------~--~~aDlViE-Av---~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 455 (737)
T TIGR02441 409 YSG------F--KNADMVIE-AV---FEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI 455 (737)
T ss_pred HHH------h--ccCCeehh-hc---cccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 211 2 46898883 22 223344568999999999999888766655433
No 480
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=69.87 E-value=2.6 Score=45.10 Aligned_cols=44 Identities=32% Similarity=0.621 Sum_probs=33.0
Q ss_pred CCCceeecCC---CCCCCHHHHHHHhhhhcCcchhhhhc-cccc-cccC
Q 006731 44 ESGFLCLFCD---AGYSSCDTLFEHCRLSHCFDFHSVKT-ELRL-DFYG 87 (633)
Q Consensus 44 ~~~~~CLFC~---~~~~~~~~~l~Hm~~~H~Fd~~~~~~-~~~l-d~Y~ 87 (633)
..-..||||+ +.|++.+.+-+||..+-+.-+..--. .+-| +||+
T Consensus 215 ~~~~~CL~CN~~~~~f~sleavr~HM~~K~HCkl~yd~ee~~El~efYD 263 (390)
T KOG2785|consen 215 GIGFICLFCNELGRPFSSLEAVRAHMRDKGHCKLPYDGEERLELAEFYD 263 (390)
T ss_pred ccCceEEEeccccCcccccHHHHHHHhhccCcccCCChHHHhhhhhhhc
Confidence 4457999999 99999999999999998886654111 1122 7777
No 481
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=69.86 E-value=21 Score=41.02 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=45.7
Q ss_pred CEEEEECCCc-ch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccccccc
Q 006731 299 AVVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESM 376 (633)
Q Consensus 299 ~~VLDVGcGt-G~-lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~ 376 (633)
.+|+-+|||. |. ++..+.+.|. .|+.||.++..++.+++ ....++.||..+..--.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~---------------------~g~~~i~GD~~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRE---------------------RGIRAVLGNAANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH---------------------CCCeEEEcCCCCHHHHH
Confidence 5788889986 53 4445555566 89999999987766653 23567899988753211
Q ss_pred ccCCCcccEEEE
Q 006731 377 QIQPHSVDVLVS 388 (633)
Q Consensus 377 ~l~~~~~DvIvs 388 (633)
...-+++|.++.
T Consensus 476 ~a~i~~a~~viv 487 (558)
T PRK10669 476 LAHLDCARWLLL 487 (558)
T ss_pred hcCccccCEEEE
Confidence 123468897764
No 482
>PRK06125 short chain dehydrogenase; Provisional
Probab=69.62 E-value=22 Score=35.89 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
..+++||-.|++.|+ ++..+++.|+ +|++++.++...+.+...+.... . .++.++..|+.+.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~-------------~~~~~~~~D~~~~ 69 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-G-------------VDVAVHALDLSSP 69 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-C-------------CceEEEEecCCCH
Confidence 467899999987653 4555667788 89999998876655544443321 1 4678888888754
Q ss_pred ccccc--cCCCcccEEEEec
Q 006731 373 GESMQ--IQPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~--l~~~~~DvIvse~ 390 (633)
..... -..+++|++|...
T Consensus 70 ~~~~~~~~~~g~id~lv~~a 89 (259)
T PRK06125 70 EAREQLAAEAGDIDILVNNA 89 (259)
T ss_pred HHHHHHHHHhCCCCEEEECC
Confidence 31000 0125799999753
No 483
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.40 E-value=24 Score=41.87 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=67.4
Q ss_pred CEEEEECCCc-c-hHHHHHH-HcCCCeEEEEeCCHHHHHHHHHHHHhC-------C-CCCCCCCCCCCCCCCCcEEEEEc
Q 006731 299 AVVMDIGCGT-G-ILSLFAA-QAGASRVIAVEASEKMAAVATQIAKDN-------D-FWWDRPQSEGNINNAGKMEVVQG 367 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a-~aGa~~V~aVD~S~~~~~~A~~~~~~n-------g-l~~~~~~~~~~~~~~~~I~vi~g 367 (633)
++|.-||+|+ | .++..++ .+|. .|+.+|.++..++.++.++... + +. .........+|++. .
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~i~~~-~ 382 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLK-----PSERDKQMALISGT-T 382 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHHHHhcEEEe-C
Confidence 6899999998 3 4566666 7787 9999999999888876655431 1 10 00000011244433 1
Q ss_pred cccccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeecceeE
Q 006731 368 MVEELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATMF 426 (633)
Q Consensus 368 d~e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~~ 426 (633)
+... + ...|+||= .+ ......-..++..+.++++|+.++.-++.++.
T Consensus 383 ~~~~------~--~~aDlViE-av---~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~ 429 (708)
T PRK11154 383 DYRG------F--KHADVVIE-AV---FEDLALKQQMVAEVEQNCAPHTIFASNTSSLP 429 (708)
T ss_pred ChHH------h--ccCCEEee-cc---cccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 2211 2 46999983 22 22334456899999999999988875555443
No 484
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.35 E-value=2.7 Score=48.60 Aligned_cols=103 Identities=20% Similarity=0.337 Sum_probs=69.5
Q ss_pred eeecCCCCCCCHHHHHHHhhhhcCcchhhhhccccccccCceeeehhhHhhc-------------ccc--cccccCCccC
Q 006731 48 LCLFCDAGYSSCDTLFEHCRLSHCFDFHSVKTELRLDFYGSFKLINYIRSQV-------------AEN--RCWICGLTCQ 112 (633)
Q Consensus 48 ~CLFC~~~~~~~~~~l~Hm~~~H~Fd~~~~~~~~~ld~Y~~IKlINyiR~~~-------------~~~--~C~~C~~~~~ 112 (633)
.|++| ..|.++..+-+||...|++..-.+.-.---.|--..|+ |-|.+. ..+ .|.+|.+.|.
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~--Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fl 193 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKL--YTRAELNLHLMFGDPDDESCRGHPLCKFCHERFL 193 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeeh--ehHHHHHHHHhcCCCccccccCCccchhhhhhhc
Confidence 68888 77889999999999999997743332211122222333 333322 223 3889999999
Q ss_pred CHHHHHHHHHHh-----cc--cccccCCCCCcCcccccccCccccccc
Q 006731 113 SNQDLQNHLHEA-----YN--LKETKLRWDKEKYLKPFMQDDKLLYSF 153 (633)
Q Consensus 113 ~~~~~~~Hm~~~-----~~--~~~~~~~w~~d~yl~Pv~e~D~lL~~l 153 (633)
....++.||+.- +. .........+-.+|.=-+-.+.+||.+
T Consensus 194 d~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~HflCE~ 241 (669)
T KOG2231|consen 194 DDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKGHFLCEE 241 (669)
T ss_pred cHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhcCccccc
Confidence 989999999842 11 233355677778888888899999943
No 485
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=69.22 E-value=51 Score=34.38 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=61.1
Q ss_pred CEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH-------hCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 299 AVVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAK-------DNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 299 ~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~-------~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
++|--||+|. | .++..++++|. +|+++|.++..++.+++.+. ..+.-.. .. ......++++ ..+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~-~~~~~~~~~~-~~~~ 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQ---EE-ADATLGRIRC-TTNL 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH---HH-HHHHHhceEe-eCCH
Confidence 5788999997 4 56777777786 89999999988776655432 1221000 00 0000011221 1222
Q ss_pred cccccccccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeeccee
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDTATM 425 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~~t~ 425 (633)
+. -...|+|+.-. .........++..+...++|+.+++-.+.++
T Consensus 79 ~~--------~~~aD~Vieav----~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 79 EE--------LRDADFIIEAI----VESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred HH--------hCCCCEEEEcC----ccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 21 14689998522 2223445667777888888887766444443
No 486
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.16 E-value=18 Score=38.27 Aligned_cols=98 Identities=15% Similarity=0.085 Sum_probs=53.7
Q ss_pred CCEEEEECCCc--chHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccc
Q 006731 298 GAVVMDIGCGT--GILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGES 375 (633)
Q Consensus 298 ~~~VLDVGcGt--G~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~ 375 (633)
..+|+-||+|. |.++..++++|. .|+.+..++. + .+..+|+.. .. ......+....+....
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~----~~~~~g~~~-------~~-~~~~~~~~~~~~~~~~-- 67 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--E----AVRENGLQV-------DS-VHGDFHLPPVQAYRSA-- 67 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--H----HHHhCCeEE-------Ee-CCCCeeecCceEEcch--
Confidence 36899999997 468888888886 7888877652 1 133344320 00 0011111111111111
Q ss_pred cccCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 376 MQIQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 376 ~~l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
-....+|+||.-.=.+ ....++..+..++++++.+++
T Consensus 68 --~~~~~~D~vilavK~~------~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 68 --EDMPPCDWVLVGLKTT------ANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred --hhcCCCCEEEEEecCC------ChHhHHHHHhhhcCCCCEEEE
Confidence 0125799998532211 235567777778888887773
No 487
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=69.09 E-value=27 Score=38.53 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCC-cch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 295 LMKGAVVMDIGCG-TGI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 295 ~~~~~~VLDVGcG-tG~-lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
...+++||-||+| .|- .+..+++.|..+|+-+--+. +.|++.++..+. . .....++
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~---erA~~La~~~~~-----------------~--~~~l~el 232 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL---ERAEELAKKLGA-----------------E--AVALEEL 232 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH---HHHHHHHHHhCC-----------------e--eecHHHH
Confidence 3578999999999 575 45666777888888876654 355666654432 1 1223333
Q ss_pred ccccccCCCcccEEEEec-ccccccChhhHHHHHHHHhh
Q 006731 373 GESMQIQPHSVDVLVSEW-MGYCLLYESMLSSVLFARDQ 410 (633)
Q Consensus 373 ~~~~~l~~~~~DvIvse~-mg~~L~~e~~l~~vl~a~~r 410 (633)
.. --..+|+|||.. -.+......++...+..+.+
T Consensus 233 ~~----~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 233 LE----ALAEADVVISSTSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred HH----hhhhCCEEEEecCCCccccCHHHHHHHHhcccC
Confidence 31 125799999863 22334566677777666554
No 488
>PRK07890 short chain dehydrogenase; Provisional
Probab=69.08 E-value=24 Score=35.43 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=51.4
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++.-.+.+...+...+ .++.++..|+.+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 66 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG---------------RRALAVPTDITDE 66 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC---------------CceEEEecCCCCH
Confidence 467899999988763 5566666788 89999998866544444443322 4578888888654
Q ss_pred ccccc------cCCCcccEEEEec
Q 006731 373 GESMQ------IQPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~------l~~~~~DvIvse~ 390 (633)
..... -.-+++|+||...
T Consensus 67 ~~~~~~~~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 67 DQCANLVALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 31000 0114689999754
No 489
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=69.08 E-value=9.1 Score=36.98 Aligned_cols=39 Identities=31% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCCCCEEEEECCCc-chH-HHHHHHcCCCeEEEEeCCHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GIL-SLFAAQAGASRVIAVEASEKMAA 334 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~l-sl~~a~aGa~~V~aVD~S~~~~~ 334 (633)
...|++|.-||+|. |.- +..+...|. +|+++|.+.....
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE 73 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh
Confidence 45789999999986 543 333333377 9999999987653
No 490
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=68.96 E-value=12 Score=39.70 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=29.3
Q ss_pred CCCCCEEEEECCCc-chHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Q 006731 295 LMKGAVVMDIGCGT-GILSLFAAQA-GASRVIAVEASEKMAAVAT 337 (633)
Q Consensus 295 ~~~~~~VLDVGcGt-G~lsl~~a~a-Ga~~V~aVD~S~~~~~~A~ 337 (633)
..++.+||-.|+|. |.++..+|++ |++.|++++.++...+.++
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~ 203 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK 203 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 35788888887763 5566666665 7756999988776654444
No 491
>PRK07478 short chain dehydrogenase; Provisional
Probab=68.81 E-value=24 Score=35.45 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEEL 372 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l 372 (633)
.++++||-.|++.|+ ++..+++.|+ +|+.++.++..++.+.+.++..+ .++.++.+|+.+.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~~~ 67 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG---------------GEAVALAGDVRDE 67 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---------------CcEEEEEcCCCCH
Confidence 457899999998763 5666677788 89999988776655554444332 4577888888764
Q ss_pred ccccc------cCCCcccEEEEec
Q 006731 373 GESMQ------IQPHSVDVLVSEW 390 (633)
Q Consensus 373 ~~~~~------l~~~~~DvIvse~ 390 (633)
..... -..+++|++|...
T Consensus 68 ~~~~~~~~~~~~~~~~id~li~~a 91 (254)
T PRK07478 68 AYAKALVALAVERFGGLDIAFNNA 91 (254)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECC
Confidence 31100 0114789999753
No 492
>PRK06128 oxidoreductase; Provisional
Probab=68.81 E-value=31 Score=35.87 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=46.3
Q ss_pred CCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHH--HHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEcccc
Q 006731 296 MKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEK--MAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVE 370 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~--~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e 370 (633)
.++++||-.|++.|+ ++..+++.|+ +|+.+..+.. ..+...+.+...+ .++.++.+|+.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~Dl~ 116 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG---------------RKAVALPGDLK 116 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC---------------CeEEEEecCCC
Confidence 467899999987663 5556666788 7777655432 1222222333222 45778889887
Q ss_pred cccccccc------CCCcccEEEEec
Q 006731 371 ELGESMQI------QPHSVDVLVSEW 390 (633)
Q Consensus 371 ~l~~~~~l------~~~~~DvIvse~ 390 (633)
+......+ .-+++|+||.+.
T Consensus 117 ~~~~v~~~~~~~~~~~g~iD~lV~nA 142 (300)
T PRK06128 117 DEAFCRQLVERAVKELGGLDILVNIA 142 (300)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 64311000 114689999764
No 493
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=68.60 E-value=19 Score=37.43 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=28.4
Q ss_pred CCCCEEEEECCCc-c-hHHHHHHHcCCCeEEEEeCC
Q 006731 296 MKGAVVMDIGCGT-G-ILSLFAAQAGASRVIAVEAS 329 (633)
Q Consensus 296 ~~~~~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S 329 (633)
..+.+|+-+|||. | ..+..++++|.++++.+|..
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678999999994 4 57888889999999999976
No 494
>PRK08324 short chain dehydrogenase; Validated
Probab=68.43 E-value=26 Score=41.36 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=49.1
Q ss_pred CCCCCEEEEECCCcch---HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccc
Q 006731 295 LMKGAVVMDIGCGTGI---LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEE 371 (633)
Q Consensus 295 ~~~~~~VLDVGcGtG~---lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~ 371 (633)
..++++||-.|++.|+ ++..+++.|+ +|++++.++..++.+...+... .++.++.+|+.+
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~----------------~~v~~v~~Dvtd 481 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP----------------DRALGVACDVTD 481 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc----------------CcEEEEEecCCC
Confidence 3467999999986553 4455556688 8999999987654444333211 357888888876
Q ss_pred cccccc-c-----CCCcccEEEEe
Q 006731 372 LGESMQ-I-----QPHSVDVLVSE 389 (633)
Q Consensus 372 l~~~~~-l-----~~~~~DvIvse 389 (633)
...... + ..+++|+||..
T Consensus 482 ~~~v~~~~~~~~~~~g~iDvvI~~ 505 (681)
T PRK08324 482 EAAVQAAFEEAALAFGGVDIVVSN 505 (681)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEC
Confidence 431100 0 12468999975
No 495
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=68.43 E-value=24 Score=36.36 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=53.0
Q ss_pred hhHHHHHHHHh-CCCCCCCCEEEEECCCc--ch--HHHHHHHc---CCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCC
Q 006731 281 RTDSYRQAILE-NPSLMKGAVVMDIGCGT--GI--LSLFAAQA---GASRVIAVEASEKMAAVATQIAKDNDFWWDRPQS 352 (633)
Q Consensus 281 R~~~y~~aI~~-~~~~~~~~~VLDVGcGt--G~--lsl~~a~a---Ga~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~ 352 (633)
.+...-+.|.. ........+||-+|+|+ |. -+.-+.|- |+ .++-.|+.+-.-
T Consensus 44 KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~a-ilvDnDi~d~vS------------------- 103 (299)
T PF06460_consen 44 KYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDA-ILVDNDIRDYVS------------------- 103 (299)
T ss_dssp HHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS--B--------------------
T ss_pred HHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCc-EEEecchhhhcc-------------------
Confidence 33444444433 23456679999999996 32 22223332 44 566666654321
Q ss_pred CCCCCCCCcEEEEEccccccccccccCCCcccEEEEecc--------cccccChhhHHHHHHHHhhcccCCcEEEe
Q 006731 353 EGNINNAGKMEVVQGMVEELGESMQIQPHSVDVLVSEWM--------GYCLLYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 353 ~~~~~~~~~I~vi~gd~e~l~~~~~l~~~~~DvIvse~m--------g~~L~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+.-..+.+|...+. ++.++|+|||..- +.....+.-..-+..-+..-|+-||.+..
T Consensus 104 -------Da~~~~~~Dc~t~~-----~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 104 -------DADQSIVGDCRTYM-----PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp -------SSSEEEES-GGGEE-----ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred -------ccCCceeccccccC-----CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 33345778888876 4589999999753 11122344455566667788999999874
No 496
>PRK07340 ornithine cyclodeaminase; Validated
Probab=68.34 E-value=28 Score=36.84 Aligned_cols=63 Identities=19% Similarity=0.053 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHhCCCCCCCCEEEEECCCc-chHHHHHHH--cCCCeEEEEeCCHHHHHHHHHHHH
Q 006731 279 KVRTDSYRQAILENPSLMKGAVVMDIGCGT-GILSLFAAQ--AGASRVIAVEASEKMAAVATQIAK 341 (633)
Q Consensus 279 ~~R~~~y~~aI~~~~~~~~~~~VLDVGcGt-G~lsl~~a~--aGa~~V~aVD~S~~~~~~A~~~~~ 341 (633)
..||.+.-....+.+.....++|+-||||. |..-+.+.. .+.++|+..+.++...+...+.+.
T Consensus 106 ~~RTaA~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~ 171 (304)
T PRK07340 106 GRRTAAVSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR 171 (304)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 356666655555555556678999999996 444333332 366789999999876554444444
No 497
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.20 E-value=32 Score=38.07 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=42.0
Q ss_pred EEEEECCCc-ch-HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 300 VVMDIGCGT-GI-LSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 300 ~VLDVGcGt-G~-lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
+|+-+|+|. |. ++..+.+.|. .|+++|.++..++.+++. ..+.++.||..+......
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~--------------------~~~~~~~gd~~~~~~l~~ 60 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDR--------------------LDVRTVVGNGSSPDVLRE 60 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------------------cCEEEEEeCCCCHHHHHH
Confidence 688888864 32 3333444466 899999999876544431 236778888765331111
Q ss_pred cCCCcccEEEE
Q 006731 378 IQPHSVDVLVS 388 (633)
Q Consensus 378 l~~~~~DvIvs 388 (633)
.....+|.|++
T Consensus 61 ~~~~~a~~vi~ 71 (453)
T PRK09496 61 AGAEDADLLIA 71 (453)
T ss_pred cCCCcCCEEEE
Confidence 22367998886
No 498
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.09 E-value=23 Score=33.52 Aligned_cols=85 Identities=26% Similarity=0.312 Sum_probs=52.9
Q ss_pred EEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 300 ~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
+|-=||+|. | .++..++++|. .|++.|.++...+.+.+ ..++ ...+..++.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~---------------------~g~~-~~~s~~e~~---- 55 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAE---------------------AGAE-VADSPAEAA---- 55 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHH---------------------TTEE-EESSHHHHH----
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHH---------------------hhhh-hhhhhhhHh----
Confidence 567788886 3 46666777788 89999999866533332 1222 334555543
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHH--HhhcccCCcEEE
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFA--RDQWLKPGGAIL 419 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a--~~r~LkpgG~li 419 (633)
...|+|++- +........++.. +...|++|.+++
T Consensus 56 ---~~~dvvi~~-----v~~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 56 ---EQADVVILC-----VPDDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp ---HHBSEEEE------SSSHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred ---hcccceEee-----cccchhhhhhhhhhHHhhccccceEEE
Confidence 467999962 4455567778777 777777776666
No 499
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=68.04 E-value=35 Score=35.84 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=55.9
Q ss_pred EEEEECCCc-c-hHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccccccccccc
Q 006731 300 VVMDIGCGT-G-ILSLFAAQAGASRVIAVEASEKMAAVATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMVEELGESMQ 377 (633)
Q Consensus 300 ~VLDVGcGt-G-~lsl~~a~aGa~~V~aVD~S~~~~~~A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~e~l~~~~~ 377 (633)
+|.-||+|. | .++..++++|. .|+.++.++..++..++. +... ..........++.+. .+..+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~-~~~~~~----- 68 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINAD----RENP---RYLPGIKLPDNLRAT-TDLAEA----- 68 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHc----Cccc---ccCCCCcCCCCeEEe-CCHHHH-----
Confidence 688899986 3 56777777777 799999998766444332 2100 000000000122221 222211
Q ss_pred cCCCcccEEEEecccccccChhhHHHHHHHHhhcccCCcEEEeec
Q 006731 378 IQPHSVDVLVSEWMGYCLLYESMLSSVLFARDQWLKPGGAILPDT 422 (633)
Q Consensus 378 l~~~~~DvIvse~mg~~L~~e~~l~~vl~a~~r~LkpgG~lip~~ 422 (633)
....|+|+.-.- ......++..+...++++..++...
T Consensus 69 --~~~~D~vi~~v~------~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 69 --LADADLILVAVP------SQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred --HhCCCEEEEeCC------HHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 146899986322 2356777777777888887776544
No 500
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=67.98 E-value=73 Score=32.78 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=65.9
Q ss_pred CCCCEEEEECCCcchHHHHHHHc----C-CCeEEEEeCCHHHHHH-HHHHHHhCCCCCCCCCCCCCCCCCCcEEEEEccc
Q 006731 296 MKGAVVMDIGCGTGILSLFAAQA----G-ASRVIAVEASEKMAAV-ATQIAKDNDFWWDRPQSEGNINNAGKMEVVQGMV 369 (633)
Q Consensus 296 ~~~~~VLDVGcGtG~lsl~~a~a----G-a~~V~aVD~S~~~~~~-A~~~~~~ngl~~~~~~~~~~~~~~~~I~vi~gd~ 369 (633)
..+...+|+|+|+..-+..+..+ | ..+++.||+|...++. |+.+.....- -.|.-+.++.
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~--------------l~v~~l~~~~ 142 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG--------------LEVNALCGDY 142 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC--------------CeEeehhhhH
Confidence 44789999999998655555444 3 3689999999987743 4444443321 2355566776
Q ss_pred cccccccccCCCcccEEEEecccccc--cChhhHHHHHHHHhhcccCCcEEEe
Q 006731 370 EELGESMQIQPHSVDVLVSEWMGYCL--LYESMLSSVLFARDQWLKPGGAILP 420 (633)
Q Consensus 370 e~l~~~~~l~~~~~DvIvse~mg~~L--~~e~~l~~vl~a~~r~LkpgG~lip 420 (633)
+.--. .+|...--+++- +|+.| +..+....++.++...|+||-.++.
T Consensus 143 ~~~La--~~~~~~~Rl~~f--lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 143 ELALA--ELPRGGRRLFVF--LGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred HHHHh--cccCCCeEEEEE--ecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 54221 133222223322 23322 3455567899999999999988774
Done!