Query 006736
Match_columns 633
No_of_seqs 275 out of 3538
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.9E-67 6.5E-72 602.3 49.5 526 31-623 1-545 (823)
2 3o21_A Glutamate receptor 3; p 100.0 4.7E-51 1.6E-55 424.1 40.5 373 30-428 3-380 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 1.5E-49 5.1E-54 414.4 40.5 377 29-430 2-380 (389)
4 3om0_A Glutamate receptor, ion 100.0 2.7E-49 9.1E-54 412.5 37.7 375 31-429 3-382 (393)
5 4f11_A Gamma-aminobutyric acid 100.0 1.5E-49 5.2E-54 420.1 35.1 386 28-457 10-422 (433)
6 3h6g_A Glutamate receptor, ion 100.0 9.9E-49 3.4E-53 408.6 39.3 375 30-429 2-384 (395)
7 3hsy_A Glutamate receptor 2; l 100.0 1.5E-48 5.1E-53 403.9 37.0 367 31-427 1-373 (376)
8 3saj_A Glutamate receptor 1; r 100.0 1.1E-47 3.6E-52 398.9 36.7 370 28-430 6-379 (384)
9 2e4u_A Metabotropic glutamate 100.0 5.4E-47 1.8E-51 411.8 43.7 393 28-464 10-485 (555)
10 3sm9_A Mglur3, metabotropic gl 100.0 3.2E-47 1.1E-51 404.7 40.0 388 27-456 8-478 (479)
11 1dp4_A Atrial natriuretic pept 100.0 2.8E-47 9.5E-52 403.2 39.1 379 31-456 1-415 (435)
12 1jdp_A NPR-C, atrial natriuret 100.0 7.4E-47 2.5E-51 400.3 41.3 366 29-424 6-397 (441)
13 3qek_A NMDA glutamate receptor 100.0 4.9E-47 1.7E-51 394.1 34.9 338 29-421 2-369 (384)
14 3ks9_A Mglur1, metabotropic gl 100.0 3.7E-46 1.3E-50 398.2 40.7 396 27-462 12-496 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 1.1E-46 3.7E-51 401.8 29.2 374 27-420 11-467 (481)
16 3i45_A Twin-arginine transloca 100.0 1.5E-39 5.3E-44 338.2 34.8 357 30-430 3-368 (387)
17 3qel_B Glutamate [NMDA] recept 100.0 5.2E-40 1.8E-44 336.5 29.6 335 30-421 2-351 (364)
18 3h5l_A Putative branched-chain 100.0 1E-39 3.4E-44 343.3 29.5 345 29-413 11-388 (419)
19 4f06_A Extracellular ligand-bi 100.0 5E-39 1.7E-43 332.0 32.4 336 30-409 3-346 (371)
20 3ipc_A ABC transporter, substr 100.0 3.8E-39 1.3E-43 331.4 31.0 345 31-423 1-353 (356)
21 3td9_A Branched chain amino ac 100.0 2.3E-38 7.8E-43 326.9 32.2 342 28-422 12-363 (366)
22 3hut_A Putative branched-chain 100.0 6.5E-38 2.2E-42 322.5 32.3 345 30-422 2-354 (358)
23 4gnr_A ABC transporter substra 100.0 1.2E-37 4.2E-42 319.7 34.1 338 28-418 3-350 (353)
24 1usg_A Leucine-specific bindin 100.0 1E-37 3.5E-42 319.4 31.5 339 31-416 1-345 (346)
25 3i09_A Periplasmic branched-ch 100.0 2.3E-37 7.9E-42 320.4 33.4 334 30-412 2-342 (375)
26 3lkb_A Probable branched-chain 100.0 4.5E-38 1.6E-42 327.8 28.0 355 30-425 5-378 (392)
27 4evq_A Putative ABC transporte 100.0 5E-37 1.7E-41 318.0 33.3 345 28-421 12-363 (375)
28 3n0w_A ABC branched chain amin 100.0 3.8E-37 1.3E-41 319.2 30.9 336 30-413 4-347 (379)
29 3eaf_A ABC transporter, substr 100.0 5.9E-37 2E-41 319.1 32.1 351 30-423 2-373 (391)
30 4eyg_A Twin-arginine transloca 100.0 1.5E-36 5E-41 313.6 31.8 346 29-421 3-359 (368)
31 3lop_A Substrate binding perip 100.0 1E-36 3.4E-41 314.2 30.1 338 30-413 3-353 (364)
32 3n0x_A Possible substrate bind 100.0 6E-37 2.1E-41 316.9 26.9 332 30-411 2-347 (374)
33 3sg0_A Extracellular ligand-bi 100.0 5.5E-36 1.9E-40 311.5 22.6 343 29-416 24-385 (386)
34 1pea_A Amidase operon; gene re 100.0 2E-33 7E-38 291.7 33.3 346 30-419 5-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 5E-34 1.7E-38 293.9 26.4 341 29-416 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 1.3E-27 4.6E-32 238.9 21.4 307 34-416 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 1.2E-27 4.1E-32 242.0 20.4 312 33-418 3-321 (327)
38 1yae_A Glutamate receptor, ion 99.5 1.9E-14 6.7E-19 144.0 6.7 121 468-591 11-142 (312)
39 4gvo_A LMO2349 protein; struct 99.5 1.1E-13 3.7E-18 133.2 8.6 112 468-591 7-120 (243)
40 4h5g_A Amino acid ABC superfam 99.4 2.3E-13 7.8E-18 130.8 6.9 99 469-578 11-111 (243)
41 3g3k_A Glutamate receptor, ion 99.4 2.4E-13 8.1E-18 132.1 6.9 107 469-578 3-119 (259)
42 1pb7_A N-methyl-D-aspartate re 99.4 2.2E-13 7.5E-18 134.8 6.6 104 470-578 41-154 (292)
43 3i6v_A Periplasmic His/Glu/Gln 99.3 2.1E-12 7.1E-17 123.1 8.1 98 469-578 4-101 (232)
44 2rc8_A Glutamate [NMDA] recept 99.3 1.5E-12 5.3E-17 128.8 7.1 92 494-587 67-162 (294)
45 1mqi_A Glutamate receptor 2; G 99.3 2.2E-12 7.5E-17 125.5 7.8 105 469-578 3-119 (263)
46 2v3u_A Glutamate receptor delt 99.3 1.7E-12 5.9E-17 126.3 6.9 104 469-578 2-115 (265)
47 2a5s_A N-methyl-D-aspartate re 99.3 2.9E-12 9.9E-17 126.2 7.3 111 466-578 25-142 (284)
48 3kzg_A Arginine 3RD transport 99.3 6.5E-12 2.2E-16 120.0 9.3 107 470-589 3-110 (237)
49 3tql_A Arginine-binding protei 99.2 2E-11 6.9E-16 115.4 10.8 109 470-590 2-110 (227)
50 3k4u_A Binding component of AB 99.2 1.2E-11 4.1E-16 118.8 8.4 108 469-588 4-112 (245)
51 4f3p_A Glutamine-binding perip 99.2 2.1E-11 7.3E-16 117.4 10.1 111 468-591 22-132 (249)
52 3kbr_A Cyclohexadienyl dehydra 99.2 1E-11 3.6E-16 118.6 7.7 108 469-588 14-122 (239)
53 4dz1_A DALS D-alanine transpor 99.2 4.4E-11 1.5E-15 116.0 11.8 111 468-590 27-138 (259)
54 3mpk_A Virulence sensor protei 99.2 4.4E-11 1.5E-15 116.5 10.8 108 469-588 31-138 (267)
55 3hv1_A Polar amino acid ABC up 99.2 2.8E-11 9.4E-16 118.0 9.2 110 469-591 20-129 (268)
56 1lst_A Lysine, arginine, ornit 99.2 2.5E-11 8.4E-16 116.0 8.3 99 469-579 3-101 (239)
57 3h7m_A Sensor protein; histidi 99.2 6.1E-11 2.1E-15 112.7 10.6 111 469-592 10-120 (234)
58 2iee_A ORF2, probable ABC tran 99.2 2.4E-11 8.1E-16 118.7 7.9 111 469-591 20-134 (271)
59 1ii5_A SLR1257 protein; membra 99.2 8.1E-11 2.8E-15 111.8 10.6 110 469-590 3-117 (233)
60 4eq9_A ABC transporter substra 99.2 5.2E-11 1.8E-15 114.2 8.6 110 469-591 7-117 (246)
61 1wdn_A GLNBP, glutamine bindin 99.2 7.8E-11 2.7E-15 111.2 9.6 108 470-590 3-110 (226)
62 3del_B Arginine binding protei 99.2 9.1E-11 3.1E-15 112.3 10.0 109 469-591 10-120 (242)
63 2y7i_A STM4351; arginine-bindi 99.1 1.3E-10 4.5E-15 110.0 10.2 98 469-578 5-103 (229)
64 2q88_A EHUB, putative ABC tran 99.1 8.1E-11 2.8E-15 113.8 8.2 108 469-588 12-120 (257)
65 2pvu_A ARTJ; basic amino acid 99.0 6.4E-10 2.2E-14 108.5 9.2 110 468-591 40-149 (272)
66 2pyy_A Ionotropic glutamate re 99.0 5.8E-10 2E-14 105.3 7.6 96 470-578 3-98 (228)
67 2vha_A Periplasmic binding tra 99.0 9.3E-10 3.2E-14 108.3 9.2 111 469-590 16-131 (287)
68 3qax_A Probable ABC transporte 98.9 2.9E-09 1E-13 103.3 9.6 110 469-591 30-141 (268)
69 1xt8_A Putative amino-acid tra 98.9 2.1E-09 7E-14 106.1 8.1 109 469-590 43-154 (292)
70 4i62_A Amino acid ABC transpor 98.9 2.8E-09 9.5E-14 103.6 8.8 110 469-590 38-151 (269)
71 2yln_A Putative ABC transporte 98.9 2.9E-09 9.9E-14 104.5 8.6 98 469-578 56-154 (283)
72 2yjp_A Putative ABC transporte 98.9 3.4E-09 1.2E-13 104.5 9.0 108 470-590 55-165 (291)
73 2v25_A Major cell-binding fact 98.8 6.8E-09 2.3E-13 100.1 7.9 99 469-578 37-138 (259)
74 3ksm_A ABC-type sugar transpor 98.6 3.3E-06 1.1E-10 82.0 20.2 209 33-258 1-221 (276)
75 2h3h_A Sugar ABC transporter, 98.6 5.5E-06 1.9E-10 82.2 21.6 208 33-258 2-216 (313)
76 3brq_A HTH-type transcriptiona 98.5 3.8E-06 1.3E-10 82.5 18.7 212 30-259 17-237 (296)
77 3brs_A Periplasmic binding pro 98.5 1.2E-05 4E-10 78.7 20.9 211 31-258 4-224 (289)
78 1dbq_A Purine repressor; trans 98.5 1.1E-05 3.9E-10 78.8 19.9 212 30-258 5-223 (289)
79 3gbv_A Putative LACI-family tr 98.4 1.3E-05 4.3E-10 79.1 20.1 214 30-259 6-233 (304)
80 2qu7_A Putative transcriptiona 98.4 2.7E-06 9.2E-11 83.3 14.9 209 30-258 6-223 (288)
81 3d02_A Putative LACI-type tran 98.4 2.8E-05 9.7E-10 76.5 22.4 211 31-258 3-223 (303)
82 2rjo_A Twin-arginine transloca 98.4 2.5E-05 8.5E-10 78.2 22.2 205 31-248 4-222 (332)
83 3l49_A ABC sugar (ribose) tran 98.4 1.4E-05 4.6E-10 78.3 19.4 208 31-258 4-224 (291)
84 3rot_A ABC sugar transporter, 98.4 1.2E-05 4.2E-10 79.0 18.6 205 32-250 3-215 (297)
85 2qh8_A Uncharacterized protein 98.4 1.8E-05 6.3E-10 78.0 19.6 190 29-232 5-203 (302)
86 2fvy_A D-galactose-binding per 98.4 3.9E-05 1.3E-09 75.7 21.4 204 33-246 3-226 (309)
87 3c3k_A Alanine racemase; struc 98.3 5.3E-05 1.8E-09 73.9 21.6 199 30-251 6-212 (285)
88 1tjy_A Sugar transport protein 98.3 5.8E-05 2E-09 74.9 22.1 206 34-258 5-222 (316)
89 3g1w_A Sugar ABC transporter; 98.3 7.3E-05 2.5E-09 73.6 22.5 212 32-259 4-222 (305)
90 2fn9_A Ribose ABC transporter, 98.3 4E-05 1.4E-09 75.0 20.2 197 33-247 3-215 (290)
91 3l6u_A ABC-type sugar transpor 98.3 4E-05 1.4E-09 75.0 20.3 209 30-258 6-228 (293)
92 3lkv_A Uncharacterized conserv 98.3 3.9E-05 1.3E-09 75.5 20.0 205 28-246 4-220 (302)
93 2fep_A Catabolite control prot 98.3 2.7E-05 9.1E-10 76.2 18.7 212 29-258 13-231 (289)
94 2x7x_A Sensor protein; transfe 98.3 9.7E-05 3.3E-09 73.6 22.7 210 31-258 5-222 (325)
95 2vk2_A YTFQ, ABC transporter p 98.3 5.4E-05 1.9E-09 74.7 20.5 212 32-258 2-227 (306)
96 2ioy_A Periplasmic sugar-bindi 98.3 0.00014 4.8E-09 70.7 23.2 206 33-258 2-216 (283)
97 2iks_A DNA-binding transcripti 98.3 5.9E-05 2E-09 73.8 20.5 211 30-259 18-234 (293)
98 3o74_A Fructose transport syst 98.3 6.8E-05 2.3E-09 72.4 20.4 208 33-259 3-216 (272)
99 2h0a_A TTHA0807, transcription 98.3 8.8E-06 3E-10 79.0 13.7 205 34-258 1-216 (276)
100 3lft_A Uncharacterized protein 98.3 9.8E-05 3.3E-09 72.4 21.3 199 32-247 2-210 (295)
101 3h75_A Periplasmic sugar-bindi 98.3 0.00012 4.3E-09 73.6 22.4 216 32-258 3-241 (350)
102 3o1i_D Periplasmic protein TOR 98.3 3E-05 1E-09 76.3 17.5 206 30-248 3-218 (304)
103 3d8u_A PURR transcriptional re 98.2 6.8E-05 2.3E-09 72.6 19.6 209 32-258 3-217 (275)
104 2rgy_A Transcriptional regulat 98.2 2.1E-05 7.2E-10 77.0 16.0 211 30-258 6-225 (290)
105 2o20_A Catabolite control prot 98.2 3.6E-05 1.2E-09 77.0 18.0 210 31-258 62-275 (332)
106 3dbi_A Sugar-binding transcrip 98.2 4.5E-05 1.5E-09 76.5 18.7 211 31-258 60-278 (338)
107 3k4h_A Putative transcriptiona 98.2 4.5E-05 1.5E-09 74.6 18.3 212 30-258 6-228 (292)
108 1jx6_A LUXP protein; protein-l 98.2 8.5E-05 2.9E-09 74.6 20.0 208 29-247 40-258 (342)
109 3clk_A Transcription regulator 98.2 2.2E-05 7.5E-10 76.8 15.2 211 30-258 6-221 (290)
110 3bbl_A Regulatory protein of L 98.2 3.8E-05 1.3E-09 75.0 16.8 210 32-259 4-225 (287)
111 1qpz_A PURA, protein (purine n 98.2 0.00011 3.8E-09 73.6 20.5 211 31-258 57-274 (340)
112 8abp_A L-arabinose-binding pro 98.2 0.00012 4.2E-09 72.0 20.4 215 32-259 2-233 (306)
113 3gv0_A Transcriptional regulat 98.1 0.00021 7.2E-09 69.7 20.9 211 30-258 6-224 (288)
114 3hcw_A Maltose operon transcri 98.1 0.0003 1E-08 68.9 21.7 210 30-258 5-228 (295)
115 3ctp_A Periplasmic binding pro 98.1 4.2E-05 1.5E-09 76.4 15.4 199 30-252 58-260 (330)
116 2hsg_A Glucose-resistance amyl 98.1 3.9E-05 1.3E-09 76.7 15.0 211 30-258 58-275 (332)
117 3egc_A Putative ribose operon 98.1 4E-05 1.4E-09 75.0 14.8 211 30-258 6-222 (291)
118 3gyb_A Transcriptional regulat 98.1 2.2E-05 7.5E-10 76.4 12.5 205 31-258 4-212 (280)
119 3m9w_A D-xylose-binding peripl 98.1 0.00022 7.6E-09 70.5 19.9 206 32-256 2-220 (313)
120 3jy6_A Transcriptional regulat 98.1 0.00025 8.4E-09 68.7 19.5 207 30-258 5-217 (276)
121 3kjx_A Transcriptional regulat 98.1 0.00013 4.6E-09 73.2 18.0 206 30-253 66-277 (344)
122 3g85_A Transcriptional regulat 98.0 8.3E-05 2.8E-09 72.6 15.5 210 29-258 8-224 (289)
123 3k9c_A Transcriptional regulat 98.0 0.00038 1.3E-08 67.8 20.2 208 30-258 10-221 (289)
124 3tb6_A Arabinose metabolism tr 98.0 0.00018 6.1E-09 70.5 17.3 204 33-253 16-231 (298)
125 3qk7_A Transcriptional regulat 98.0 0.00019 6.4E-09 70.3 16.9 209 31-258 5-223 (294)
126 3kke_A LACI family transcripti 98.0 0.00025 8.6E-09 69.7 17.4 209 30-258 13-233 (303)
127 2dri_A D-ribose-binding protei 97.9 0.0016 5.5E-08 62.7 22.1 205 34-258 3-215 (271)
128 3cs3_A Sugar-binding transcrip 97.9 0.00081 2.8E-08 65.0 19.8 199 30-256 6-210 (277)
129 3bil_A Probable LACI-family tr 97.9 0.00059 2E-08 68.5 19.2 208 31-258 65-277 (348)
130 3e3m_A Transcriptional regulat 97.9 0.0011 3.6E-08 66.9 20.8 205 31-253 69-280 (355)
131 1byk_A Protein (trehalose oper 97.9 0.0012 4E-08 62.9 19.9 199 33-258 3-205 (255)
132 3e61_A Putative transcriptiona 97.8 0.00036 1.2E-08 67.4 15.8 199 30-255 6-209 (277)
133 1gud_A ALBP, D-allose-binding 97.8 0.0036 1.2E-07 60.7 23.1 212 34-259 3-228 (288)
134 3h5o_A Transcriptional regulat 97.8 0.0008 2.7E-08 67.3 18.5 204 31-253 61-269 (339)
135 3huu_A Transcription regulator 97.8 0.00081 2.8E-08 66.1 18.0 207 30-258 20-238 (305)
136 3uug_A Multiple sugar-binding 97.8 0.00055 1.9E-08 68.1 16.8 205 32-251 3-232 (330)
137 3hs3_A Ribose operon repressor 97.8 0.00065 2.2E-08 65.7 16.8 195 30-253 8-208 (277)
138 2fqx_A Membrane lipoprotein TM 97.7 0.0039 1.3E-07 61.5 21.6 208 31-258 3-223 (318)
139 4fe7_A Xylose operon regulator 97.7 0.0015 5.1E-08 67.3 19.2 211 28-258 21-239 (412)
140 1jye_A Lactose operon represso 97.7 0.0031 1E-07 63.3 20.3 201 31-253 60-268 (349)
141 3jvd_A Transcriptional regulat 97.7 0.0024 8.3E-08 63.6 19.2 200 31-258 63-267 (333)
142 3miz_A Putative transcriptiona 97.6 0.00015 5.1E-09 71.3 8.9 200 30-250 11-224 (301)
143 3s99_A Basic membrane lipoprot 97.5 0.011 3.6E-07 59.1 21.0 202 27-247 21-230 (356)
144 2hqb_A Transcriptional activat 97.5 0.016 5.5E-07 56.4 21.9 195 31-246 4-204 (296)
145 2ozz_A Hypothetical protein YH 97.3 0.00013 4.5E-09 67.3 4.3 76 492-578 27-108 (231)
146 3qi7_A Putative transcriptiona 97.1 0.044 1.5E-06 54.1 20.0 217 30-250 10-252 (371)
147 3h5t_A Transcriptional regulat 97.0 0.023 7.7E-07 57.2 17.8 212 30-258 66-304 (366)
148 3ixl_A Amdase, arylmalonate de 96.9 0.019 6.5E-07 53.7 14.5 129 87-243 56-201 (240)
149 2xed_A Putative maleate isomer 95.1 0.33 1.1E-05 46.2 13.8 124 89-240 82-226 (273)
150 3n5l_A Binding protein compone 94.9 0.021 7.3E-07 55.9 4.8 100 469-587 3-110 (310)
151 3p7i_A PHND, subunit of alkylp 94.2 0.036 1.2E-06 54.5 4.7 93 468-578 12-112 (321)
152 2dgd_A 223AA long hypothetical 92.3 1.6 5.4E-05 40.0 12.4 79 153-234 96-183 (223)
153 1jfl_A Aspartate racemase; alp 91.5 1.2 3.9E-05 41.1 10.5 80 88-196 65-144 (228)
154 2eq5_A 228AA long hypothetical 91.0 1.9 6.4E-05 39.7 11.4 163 32-234 6-186 (228)
155 2fqx_A Membrane lipoprotein TM 90.3 6.3 0.00021 38.2 15.1 126 34-166 131-264 (318)
156 3bfj_A 1,3-propanediol oxidore 89.4 2.3 8E-05 42.7 11.4 88 155-242 23-114 (387)
157 3s99_A Basic membrane lipoprot 89.3 4.5 0.00015 40.0 13.2 90 33-131 150-239 (356)
158 3ix1_A N-formyl-4-amino-5-amin 89.0 0.48 1.6E-05 45.8 5.8 79 492-578 14-96 (302)
159 3ox4_A Alcohol dehydrogenase 2 88.6 1.9 6.6E-05 43.2 10.0 90 154-243 20-111 (383)
160 2hqb_A Transcriptional activat 86.3 10 0.00035 36.1 13.6 122 33-167 127-248 (296)
161 2q5c_A NTRC family transcripti 85.6 19 0.00064 31.9 17.3 159 32-248 4-162 (196)
162 1rrm_A Lactaldehyde reductase; 84.6 2.3 8E-05 42.6 8.2 101 140-243 9-111 (386)
163 2zsk_A PH1733, 226AA long hypo 83.9 5.7 0.0002 36.3 9.9 77 92-197 68-144 (226)
164 1vlj_A NADH-dependent butanol 83.8 4.7 0.00016 40.7 10.0 88 155-242 33-123 (407)
165 1o2d_A Alcohol dehydrogenase, 83.4 9.1 0.00031 38.0 11.9 100 140-243 19-121 (371)
166 3qsl_A Putative exported prote 83.0 3.1 0.0001 40.7 8.3 75 506-588 58-137 (346)
167 2l82_A Designed protein OR32; 82.9 14 0.00048 28.3 12.6 97 142-247 4-104 (162)
168 4ddd_A Immunogenic protein; ss 82.7 3.6 0.00012 40.1 8.5 100 469-589 31-146 (327)
169 2x26_A Periplasmic aliphatic s 82.7 1.4 4.9E-05 42.4 5.6 65 505-578 24-95 (308)
170 2gzm_A Glutamate racemase; enz 81.7 7.1 0.00024 36.7 9.8 39 88-126 56-94 (267)
171 2oho_A Glutamate racemase; iso 81.6 7.1 0.00024 36.9 9.8 38 89-126 66-103 (273)
172 3uif_A Sulfonate ABC transport 80.1 1.2 4.1E-05 44.0 4.0 79 502-589 35-119 (348)
173 3s81_A Putative aspartate race 80.0 4.7 0.00016 38.0 7.8 40 87-127 89-128 (268)
174 3uhj_A Probable glycerol dehyd 79.9 2.5 8.5E-05 42.3 6.2 82 155-240 43-126 (387)
175 3dbi_A Sugar-binding transcrip 77.3 7.4 0.00025 37.9 8.8 88 157-247 53-144 (338)
176 3ce9_A Glycerol dehydrogenase; 77.1 8.9 0.0003 37.8 9.3 96 140-241 12-109 (354)
177 3ist_A Glutamate racemase; str 76.7 14 0.00049 34.6 10.1 39 88-126 58-96 (269)
178 3ksx_A Nitrate transport prote 76.6 3.6 0.00012 40.0 6.2 98 468-588 27-130 (324)
179 3m9w_A D-xylose-binding peripl 76.6 8.3 0.00028 37.0 8.8 79 166-247 3-84 (313)
180 4dik_A Flavoprotein; TM0755, e 76.2 16 0.00055 36.8 10.9 93 165-262 265-365 (410)
181 3un6_A Hypothetical protein sa 75.6 2.1 7.2E-05 42.0 4.3 63 508-578 78-143 (341)
182 2jfq_A Glutamate racemase; cel 75.2 19 0.00066 34.1 10.7 41 87-127 74-114 (286)
183 2dwu_A Glutamate racemase; iso 74.4 21 0.00071 33.6 10.7 40 87-126 59-98 (276)
184 3jy6_A Transcriptional regulat 74.3 8.9 0.00031 35.9 8.2 79 164-247 6-86 (276)
185 3l49_A ABC sugar (ribose) tran 74.1 9.3 0.00032 36.1 8.4 80 165-247 5-87 (291)
186 3g1w_A Sugar ABC transporter; 74.1 6.9 0.00023 37.3 7.5 80 166-247 5-87 (305)
187 2vvt_A Glutamate racemase; iso 73.6 16 0.00055 34.7 9.7 40 87-126 76-115 (290)
188 3tb6_A Arabinose metabolism tr 73.3 12 0.0004 35.4 8.9 79 166-247 16-100 (298)
189 1ccw_A Protein (glutamate muta 73.0 29 0.00098 28.6 10.0 85 167-258 5-93 (137)
190 1jq5_A Glycerol dehydrogenase; 72.7 9.4 0.00032 37.9 8.2 96 140-241 10-107 (370)
191 1b73_A Glutamate racemase; iso 72.1 21 0.00072 33.1 10.0 118 87-232 52-180 (254)
192 1zuw_A Glutamate racemase 1; ( 72.1 25 0.00086 33.0 10.6 41 86-126 54-95 (272)
193 3l6u_A ABC-type sugar transpor 71.6 10 0.00036 35.7 8.1 81 164-247 7-90 (293)
194 3h75_A Periplasmic sugar-bindi 71.6 9.3 0.00032 37.4 7.9 80 165-247 3-87 (350)
195 2yxb_A Coenzyme B12-dependent 71.0 43 0.0015 28.4 11.0 86 165-257 18-107 (161)
196 3h5o_A Transcriptional regulat 70.9 12 0.00041 36.3 8.5 84 160-247 57-142 (339)
197 1i6a_A OXYR, hydrogen peroxide 70.5 15 0.0005 32.7 8.5 84 469-578 4-87 (219)
198 3uug_A Multiple sugar-binding 70.2 12 0.0004 36.2 8.2 79 166-247 4-85 (330)
199 3gbv_A Putative LACI-family tr 70.1 12 0.00042 35.4 8.3 85 163-247 6-95 (304)
200 3o74_A Fructose transport syst 70.1 5.7 0.00019 37.1 5.7 79 166-247 3-83 (272)
201 8abp_A L-arabinose-binding pro 69.3 14 0.00049 35.0 8.5 78 166-247 3-83 (306)
202 1mkz_A Molybdenum cofactor bio 69.1 21 0.00072 30.8 8.6 65 165-231 10-78 (172)
203 2pju_A Propionate catabolism o 68.8 43 0.0015 30.3 10.9 162 32-248 12-174 (225)
204 3k9c_A Transcriptional regulat 67.6 49 0.0017 30.9 11.9 118 33-161 127-252 (289)
205 2l69_A Rossmann 2X3 fold prote 67.2 36 0.0012 25.2 8.4 68 143-219 54-121 (134)
206 3kke_A LACI family transcripti 67.1 12 0.0004 35.7 7.3 86 158-247 8-95 (303)
207 2jfn_A Glutamate racemase; cel 66.7 30 0.001 32.7 10.0 36 91-126 77-113 (285)
208 3e3m_A Transcriptional regulat 65.8 15 0.00051 36.0 8.0 84 160-247 65-150 (355)
209 3jv9_A OXYR, transcriptional r 65.7 16 0.00056 32.1 7.7 82 470-578 4-86 (219)
210 3uhf_A Glutamate racemase; str 65.5 46 0.0016 31.2 10.7 59 67-126 47-115 (274)
211 2ql3_A Probable transcriptiona 64.3 22 0.00077 31.0 8.3 84 469-578 4-87 (209)
212 2fvy_A D-galactose-binding per 64.3 19 0.00066 34.1 8.4 79 166-247 3-85 (309)
213 3qvl_A Putative hydantoin race 63.1 92 0.0031 28.5 13.8 169 33-241 2-194 (245)
214 3ojc_A Putative aspartate/glut 63.1 5.1 0.00017 36.8 3.6 80 89-197 68-148 (231)
215 3ho7_A OXYR; beta-alpha-barrel 62.7 20 0.00067 32.0 7.7 84 469-578 10-93 (232)
216 2fn9_A Ribose ABC transporter, 62.7 19 0.00064 33.9 7.8 79 166-247 3-84 (290)
217 2x7q_A Ca3427, possible thiami 62.6 8.7 0.0003 37.1 5.5 67 504-578 36-109 (321)
218 3brq_A HTH-type transcriptiona 62.2 26 0.00087 32.9 8.7 84 160-247 14-102 (296)
219 4ab5_A Transcriptional regulat 61.5 14 0.00048 32.7 6.4 84 469-578 7-90 (222)
220 3d02_A Putative LACI-type tran 61.5 22 0.00074 33.6 8.1 80 166-247 5-87 (303)
221 3bil_A Probable LACI-family tr 61.3 15 0.0005 35.9 6.9 79 165-247 66-146 (348)
222 3k4h_A Putative transcriptiona 60.8 14 0.00047 34.9 6.4 81 163-247 6-93 (292)
223 1tjy_A Sugar transport protein 60.8 11 0.00039 36.1 5.9 80 166-247 4-86 (316)
224 3egc_A Putative ribose operon 60.6 10 0.00035 35.8 5.5 81 163-247 6-88 (291)
225 3lr1_A Tungstate ABC transport 60.4 11 0.00038 34.6 5.3 74 496-578 18-94 (236)
226 3oxn_A Putative transcriptiona 60.0 31 0.0011 31.0 8.6 83 469-578 18-101 (241)
227 1atg_A MODA, periplasmic molyb 59.7 10 0.00036 33.9 5.2 72 499-579 14-91 (231)
228 2iks_A DNA-binding transcripti 59.7 11 0.00037 35.7 5.5 85 160-247 15-101 (293)
229 3gyb_A Transcriptional regulat 59.5 26 0.0009 32.6 8.2 117 33-161 119-243 (280)
230 2o20_A Catabolite control prot 59.5 20 0.00069 34.6 7.5 83 161-247 59-143 (332)
231 3ksm_A ABC-type sugar transpor 59.4 15 0.00051 34.1 6.4 80 167-247 2-85 (276)
232 1ta9_A Glycerol dehydrogenase; 59.3 21 0.00072 36.4 7.7 83 155-240 81-165 (450)
233 3kjx_A Transcriptional regulat 59.1 32 0.0011 33.3 9.0 78 166-247 69-148 (344)
234 2ioy_A Periplasmic sugar-bindi 59.1 21 0.00072 33.4 7.4 79 166-247 2-83 (283)
235 3out_A Glutamate racemase; str 58.9 31 0.0011 32.2 8.3 38 89-126 61-99 (268)
236 2fep_A Catabolite control prot 58.8 23 0.00077 33.3 7.6 79 165-247 16-96 (289)
237 3rot_A ABC sugar transporter, 58.5 14 0.00049 34.9 6.2 81 166-247 4-87 (297)
238 2y7p_A LYSR-type regulatory pr 58.4 20 0.0007 31.8 6.9 84 469-578 7-90 (218)
239 3jzd_A Iron-containing alcohol 58.4 17 0.00058 35.8 6.7 84 154-241 25-110 (358)
240 1jye_A Lactose operon represso 57.9 26 0.00088 34.1 8.1 66 163-230 59-126 (349)
241 3hl0_A Maleylacetate reductase 57.9 23 0.00079 34.7 7.5 84 154-241 23-108 (353)
242 1y80_A Predicted cobalamin bin 57.7 70 0.0024 28.4 10.3 86 166-257 89-178 (210)
243 2dri_A D-ribose-binding protei 57.6 24 0.00083 32.7 7.5 79 166-247 2-83 (271)
244 3huu_A Transcription regulator 57.5 12 0.00042 35.6 5.4 86 158-247 15-107 (305)
245 3e61_A Putative transcriptiona 57.1 21 0.0007 33.3 6.9 78 164-247 7-87 (277)
246 1twy_A ABC transporter, peripl 56.9 22 0.00076 33.1 7.2 71 498-578 41-113 (290)
247 2jfz_A Glutamate racemase; cel 56.4 53 0.0018 30.3 9.5 37 90-126 55-91 (255)
248 1y5e_A Molybdenum cofactor bio 56.1 50 0.0017 28.3 8.6 67 163-231 11-81 (169)
249 2pjk_A 178AA long hypothetical 55.7 45 0.0015 28.9 8.3 67 163-231 13-90 (178)
250 1oj7_A Hypothetical oxidoreduc 55.7 24 0.00081 35.5 7.4 83 156-242 43-128 (408)
251 3muq_A Uncharacterized conserv 55.0 14 0.00047 33.9 5.0 74 496-578 18-94 (237)
252 3ezx_A MMCP 1, monomethylamine 54.6 77 0.0026 28.4 9.9 87 166-258 93-185 (215)
253 2x7x_A Sensor protein; transfe 54.5 41 0.0014 32.1 8.8 81 164-247 5-88 (325)
254 2h3h_A Sugar ABC transporter, 54.3 26 0.00089 33.3 7.3 79 167-247 3-83 (313)
255 2rgy_A Transcriptional regulat 54.2 20 0.00069 33.7 6.4 80 164-247 7-91 (290)
256 3hcw_A Maltose operon transcri 53.8 1.4E+02 0.0047 27.8 12.3 116 33-161 132-259 (295)
257 1jx6_A LUXP protein; protein-l 53.6 29 0.001 33.5 7.6 82 166-247 44-129 (342)
258 3gv0_A Transcriptional regulat 53.0 24 0.00082 33.1 6.7 81 163-247 6-90 (288)
259 2rjo_A Twin-arginine transloca 52.7 27 0.00094 33.6 7.2 79 166-247 6-89 (332)
260 1zbm_A Hypothetical protein AF 52.1 23 0.00077 33.2 6.3 51 528-578 45-98 (280)
261 3c3k_A Alanine racemase; struc 51.5 48 0.0016 30.9 8.6 79 164-247 7-87 (285)
262 2vk2_A YTFQ, ABC transporter p 50.7 24 0.00082 33.5 6.3 79 166-247 3-84 (306)
263 3rfq_A Pterin-4-alpha-carbinol 50.6 36 0.0012 29.7 6.8 65 164-230 29-97 (185)
264 3d8u_A PURR transcriptional re 50.5 24 0.00082 32.7 6.2 78 166-247 4-83 (275)
265 3miz_A Putative transcriptiona 50.4 50 0.0017 31.0 8.6 72 158-232 6-80 (301)
266 2hsg_A Glucose-resistance amyl 49.5 32 0.0011 33.1 7.1 80 164-247 59-140 (332)
267 2is8_A Molybdopterin biosynthe 49.4 44 0.0015 28.4 7.1 63 167-231 3-71 (164)
268 3hs3_A Ribose operon repressor 49.0 31 0.0011 32.1 6.7 69 159-230 4-75 (277)
269 3p6l_A Sugar phosphate isomera 48.6 96 0.0033 28.4 10.1 93 154-247 25-129 (262)
270 2fp4_A Succinyl-COA ligase [GD 48.5 1.8E+02 0.0063 27.5 14.5 144 82-244 80-234 (305)
271 3tpf_A Otcase, ornithine carba 48.3 1.9E+02 0.0063 27.5 13.1 133 33-199 37-176 (307)
272 1p99_A Hypothetical protein PG 47.9 17 0.00058 34.7 4.6 54 30-102 38-91 (295)
273 2q9u_A A-type flavoprotein; fl 47.8 1.4E+02 0.0049 29.5 11.9 88 164-258 255-350 (414)
274 3clk_A Transcription regulator 47.7 23 0.00077 33.3 5.5 80 164-247 7-89 (290)
275 3fni_A Putative diflavin flavo 47.6 68 0.0023 27.0 8.0 77 166-249 5-87 (159)
276 3qk7_A Transcriptional regulat 47.3 33 0.0011 32.3 6.6 79 164-247 5-89 (294)
277 3onm_A Transcriptional regulat 47.2 62 0.0021 28.9 8.4 82 469-578 26-107 (238)
278 3okf_A 3-dehydroquinate syntha 46.3 76 0.0026 31.5 9.1 95 159-258 56-158 (390)
279 1ixc_A CBNR, LYSR-type regulat 46.2 56 0.0019 30.3 8.1 84 469-578 90-173 (294)
280 3jvd_A Transcriptional regulat 46.1 2E+02 0.0069 27.3 13.3 117 32-161 174-298 (333)
281 3iwt_A 178AA long hypothetical 46.0 70 0.0024 27.5 8.0 63 167-231 17-90 (178)
282 3cs3_A Sugar-binding transcrip 45.7 1.6E+02 0.0055 26.9 11.3 116 33-161 119-244 (277)
283 4es6_A Uroporphyrinogen-III sy 44.5 17 0.00059 33.7 4.0 86 153-244 116-206 (254)
284 3pzy_A MOG; ssgcid, seattle st 43.7 43 0.0015 28.5 6.1 62 166-230 8-74 (164)
285 3lte_A Response regulator; str 43.7 94 0.0032 24.3 8.2 68 166-246 7-76 (132)
286 3lmz_A Putative sugar isomeras 43.5 86 0.0029 28.6 8.8 93 154-247 33-127 (257)
287 1gud_A ALBP, D-allose-binding 43.4 40 0.0014 31.5 6.6 81 166-247 2-85 (288)
288 3cvg_A Putative metal binding 43.1 25 0.00087 33.3 5.1 74 497-579 33-116 (294)
289 3bbl_A Regulatory protein of L 43.1 33 0.0011 32.1 5.9 78 166-247 5-88 (287)
290 1dbq_A Purine repressor; trans 43.0 57 0.002 30.3 7.6 64 165-231 7-72 (289)
291 2hxr_A HTH-type transcriptiona 42.7 77 0.0026 28.1 8.3 84 469-578 29-112 (238)
292 4edp_A ABC transporter, substr 42.3 11 0.00039 36.5 2.5 64 1-76 4-69 (351)
293 2qh8_A Uncharacterized protein 42.0 1.5E+02 0.0051 27.7 10.5 113 32-161 140-255 (302)
294 3dmy_A Protein FDRA; predicted 41.8 3E+02 0.01 28.0 14.0 143 82-246 45-198 (480)
295 3fzv_A Probable transcriptiona 41.7 52 0.0018 30.7 7.2 84 469-578 94-178 (306)
296 3g85_A Transcriptional regulat 41.4 68 0.0023 29.8 7.9 121 33-161 128-257 (289)
297 1e5d_A Rubredoxin\:oxygen oxid 41.0 2.7E+02 0.0091 27.2 12.8 90 159-256 246-343 (402)
298 2g2c_A Putative molybdenum cof 40.6 70 0.0024 27.2 7.0 63 167-231 7-78 (167)
299 3rf7_A Iron-containing alcohol 40.2 81 0.0028 31.1 8.3 97 140-243 28-132 (375)
300 3brs_A Periplasmic binding pro 39.9 2.2E+02 0.0076 26.0 12.6 120 32-161 131-258 (289)
301 2fyi_A HTH-type transcriptiona 39.8 84 0.0029 27.7 7.9 85 469-578 13-97 (228)
302 3l4e_A Uncharacterized peptida 39.3 61 0.0021 28.8 6.6 97 153-258 15-120 (206)
303 3i42_A Response regulator rece 39.2 1.3E+02 0.0045 23.2 9.3 57 180-245 14-72 (127)
304 2g29_A Nitrate transport prote 38.9 26 0.0009 35.2 4.6 89 469-578 32-134 (417)
305 1xah_A Sadhqs, 3-dehydroquinat 38.7 60 0.0021 31.7 7.1 109 140-258 11-125 (354)
306 3tmg_A Glycine betaine, L-prol 38.7 1.6E+02 0.0056 27.4 9.9 81 500-590 32-119 (280)
307 1sg6_A Pentafunctional AROM po 38.6 1.1E+02 0.0038 30.3 9.1 94 160-258 31-140 (393)
308 1us5_A Putative GLUR0 ligand b 38.3 77 0.0026 29.9 7.8 70 501-578 38-121 (314)
309 2qip_A Protein of unknown func 38.2 1.4E+02 0.0047 25.2 8.5 92 155-247 37-134 (165)
310 3o1i_D Periplasmic protein TOR 37.3 29 0.001 32.7 4.5 80 166-247 6-88 (304)
311 4ecf_A ABC-type phosphate tran 37.2 78 0.0027 29.3 7.4 71 498-578 17-91 (264)
312 3lft_A Uncharacterized protein 37.1 2.5E+02 0.0087 25.9 11.8 112 32-160 133-247 (295)
313 3kbq_A Protein TA0487; structu 36.9 77 0.0026 27.2 6.5 61 167-230 5-70 (172)
314 3hly_A Flavodoxin-like domain; 36.6 90 0.0031 26.2 7.1 75 167-249 2-82 (161)
315 3zy2_A Putative GDP-fucose pro 36.4 1.5E+02 0.0053 28.5 9.0 88 146-246 261-348 (362)
316 3grc_A Sensor protein, kinase; 36.3 1E+02 0.0036 24.4 7.4 66 166-244 7-74 (140)
317 1byk_A Protein (trehalose oper 36.2 68 0.0023 29.1 6.8 63 166-231 3-67 (255)
318 3tsm_A IGPS, indole-3-glycerol 36.2 2.6E+02 0.0088 26.0 10.5 87 154-248 82-171 (272)
319 3gt7_A Sensor protein; structu 36.1 1.7E+02 0.0059 23.7 9.5 68 166-246 8-77 (154)
320 3l6g_A Betaine ABC transporter 35.9 1.8E+02 0.0062 26.6 9.6 81 498-588 16-103 (256)
321 4a8t_A Putrescine carbamoyltra 35.7 3.1E+02 0.01 26.4 13.1 133 33-199 64-205 (339)
322 2f5x_A BUGD; periplasmic bindi 35.7 47 0.0016 31.8 5.6 84 495-586 31-129 (312)
323 4a8p_A Putrescine carbamoyltra 35.3 3.2E+02 0.011 26.5 14.2 133 33-199 42-183 (355)
324 2zzv_A ABC transporter, solute 35.1 28 0.00097 34.2 4.1 63 501-566 54-118 (361)
325 1qpz_A PURA, protein (purine n 34.9 1E+02 0.0035 29.5 8.2 67 162-231 55-123 (340)
326 3iv7_A Alcohol dehydrogenase I 34.5 27 0.00094 34.4 3.8 82 154-241 26-109 (364)
327 3gd5_A Otcase, ornithine carba 34.4 3.1E+02 0.011 26.1 14.2 133 33-199 49-187 (323)
328 4dz1_A DALS D-alanine transpor 34.3 95 0.0032 28.1 7.5 55 162-230 134-192 (259)
329 3dnf_A ISPH, LYTB, 4-hydroxy-3 34.1 80 0.0027 29.8 6.6 54 73-126 185-240 (297)
330 2i2x_B MTAC, methyltransferase 33.7 2.8E+02 0.0096 25.4 10.6 84 165-257 123-211 (258)
331 4gd5_A Phosphate ABC transport 33.6 61 0.0021 30.2 6.0 48 17-76 22-71 (279)
332 4f2g_A Otcase 1, ornithine car 33.0 2.8E+02 0.0094 26.3 10.3 133 33-199 46-184 (309)
333 2dvz_A BUGE, putative exported 33.0 37 0.0013 32.6 4.4 82 497-586 35-133 (314)
334 4esw_A Pyrimidine biosynthesis 32.8 81 0.0028 30.4 7.0 90 495-592 21-114 (342)
335 2bon_A Lipid kinase; DAG kinas 32.6 1.5E+02 0.0051 28.5 8.8 76 166-245 30-105 (332)
336 3r7f_A Aspartate carbamoyltran 32.5 3.3E+02 0.011 25.8 12.1 135 33-199 37-179 (304)
337 3ctp_A Periplasmic binding pro 32.3 79 0.0027 30.2 6.8 65 163-231 58-124 (330)
338 3gl9_A Response regulator; bet 32.1 1.7E+02 0.0059 22.4 8.7 57 181-246 14-72 (122)
339 4f2d_A L-arabinose isomerase; 32.0 3.3E+02 0.011 27.9 11.5 77 49-129 27-105 (500)
340 1jlj_A Gephyrin; globular alph 31.8 1.4E+02 0.0049 25.9 7.6 68 162-231 11-87 (189)
341 2ef0_A Ornithine carbamoyltran 31.3 3.4E+02 0.012 25.6 11.6 133 33-199 46-184 (301)
342 2ohh_A Type A flavoprotein FPR 31.3 3.1E+02 0.011 26.7 11.3 75 164-245 255-336 (404)
343 2qu7_A Putative transcriptiona 31.1 79 0.0027 29.3 6.4 65 164-231 7-72 (288)
344 3t6k_A Response regulator rece 31.1 1.9E+02 0.0066 22.7 8.5 56 181-245 16-73 (136)
345 4ep1_A Otcase, ornithine carba 31.0 3.7E+02 0.012 25.9 12.4 133 33-199 71-209 (340)
346 2csu_A 457AA long hypothetical 30.7 1.7E+02 0.0058 29.7 9.1 144 82-246 73-227 (457)
347 2h0a_A TTHA0807, transcription 30.6 2.4E+02 0.0082 25.5 9.8 116 33-160 115-244 (276)
348 1uuy_A CNX1, molybdopterin bio 29.9 1.8E+02 0.006 24.6 7.8 64 166-231 6-80 (167)
349 1nrz_A PTS system, sorbose-spe 29.5 1.2E+02 0.0041 25.7 6.5 81 152-240 14-94 (164)
350 4exl_A PBP 1, phosphate-bindin 29.2 1.3E+02 0.0043 27.8 7.3 71 499-578 18-91 (265)
351 3kn3_A Putative periplasmic pr 29.2 54 0.0018 30.0 4.5 73 497-578 19-94 (242)
352 3to5_A CHEY homolog; alpha(5)b 29.1 1.2E+02 0.0041 24.6 6.3 59 180-246 23-83 (134)
353 3lua_A Response regulator rece 28.8 2.1E+02 0.0072 22.5 8.9 65 167-244 6-75 (140)
354 2h9b_A HTH-type transcriptiona 28.5 1.4E+02 0.0049 27.8 7.9 82 471-578 91-172 (312)
355 3guv_A Site-specific recombina 28.5 2.6E+02 0.0089 23.4 8.8 40 208-247 59-106 (167)
356 3re1_A Uroporphyrinogen-III sy 28.4 16 0.00055 34.2 0.8 114 122-244 95-214 (269)
357 1xrs_B D-lysine 5,6-aminomutas 28.3 3.5E+02 0.012 24.9 12.2 87 166-258 121-223 (262)
358 3qbe_A 3-dehydroquinate syntha 28.3 2.8E+02 0.0096 27.1 9.8 109 139-258 22-138 (368)
359 1ycg_A Nitric oxide reductase; 28.2 3.3E+02 0.011 26.5 10.8 83 159-248 245-334 (398)
360 3f6p_A Transcriptional regulat 28.2 1.6E+02 0.0054 22.6 6.9 57 180-245 13-71 (120)
361 2qv7_A Diacylglycerol kinase D 28.1 2.9E+02 0.0099 26.4 10.0 75 165-244 24-102 (337)
362 2lnd_A De novo designed protei 28.0 1.5E+02 0.005 21.3 5.5 42 206-247 35-78 (112)
363 2lpm_A Two-component response 28.0 60 0.002 26.0 4.2 66 171-247 13-80 (123)
364 1i4n_A Indole-3-glycerol phosp 27.5 3.1E+02 0.011 25.1 9.4 86 154-248 64-152 (251)
365 1kq3_A Glycerol dehydrogenase; 27.5 25 0.00085 34.9 2.1 93 140-240 20-114 (376)
366 2pbq_A Molybdenum cofactor bio 27.2 1.6E+02 0.0056 25.2 7.1 63 166-231 6-77 (178)
367 1ixh_A Phosphate-binding prote 27.0 69 0.0024 30.7 5.2 70 500-578 17-87 (321)
368 1oth_A Protein (ornithine tran 26.9 4.2E+02 0.014 25.2 12.5 133 33-199 47-185 (321)
369 2qpq_A Protein BUG27; alpha/be 26.8 71 0.0024 30.3 5.2 86 493-586 20-120 (301)
370 3fxq_A LYSR type regulator of 26.6 1.5E+02 0.0053 27.4 7.7 85 470-578 92-176 (305)
371 2pln_A HP1043, response regula 26.5 2.2E+02 0.0074 22.3 7.7 54 181-245 30-83 (137)
372 2j48_A Two-component sensor ki 26.5 2E+02 0.0068 21.4 7.5 58 180-246 12-71 (119)
373 3kto_A Response regulator rece 26.3 2.2E+02 0.0075 22.3 7.6 68 166-246 7-78 (136)
374 1vsq_C Mannose-specific phosph 26.3 1.3E+02 0.0045 25.5 6.1 81 152-240 17-97 (165)
375 3eod_A Protein HNR; response r 26.1 2.3E+02 0.0077 21.9 8.2 69 165-246 7-77 (130)
376 2h98_A HTH-type transcriptiona 26.0 1.8E+02 0.0062 27.2 8.1 81 471-578 91-172 (313)
377 1usg_A Leucine-specific bindin 25.9 2E+02 0.0068 27.2 8.5 80 167-247 4-94 (346)
378 3sr0_A Adenylate kinase; phosp 25.8 33 0.0011 30.6 2.4 30 98-127 2-31 (206)
379 4gd5_A Phosphate ABC transport 25.8 1.3E+02 0.0043 28.0 6.7 51 528-578 72-122 (279)
380 2zay_A Response regulator rece 25.4 2E+02 0.0067 22.9 7.3 55 181-244 20-76 (147)
381 3umf_A Adenylate kinase; rossm 25.2 27 0.00092 31.5 1.7 31 97-127 30-60 (217)
382 3r26_A Molybdate-binding perip 25.2 56 0.0019 29.6 4.0 70 500-578 22-97 (237)
383 2kv5_A FST, putative uncharact 25.0 98 0.0034 18.2 3.3 22 599-620 8-29 (33)
384 1di6_A MOGA, molybdenum cofact 24.9 1.6E+02 0.0056 25.7 6.8 64 166-231 4-75 (195)
385 1twy_A ABC transporter, peripl 24.9 77 0.0026 29.1 5.1 59 28-104 25-83 (290)
386 3sds_A Ornithine carbamoyltran 24.9 4.8E+02 0.016 25.2 11.8 133 33-199 67-218 (353)
387 3gbc_A Pyrazinamidase/nicotina 24.6 2.9E+02 0.01 23.7 8.4 69 154-225 114-182 (186)
388 2zzv_A ABC transporter, solute 24.6 84 0.0029 30.7 5.4 44 29-80 32-75 (361)
389 3gzg_A Molybdate-binding perip 24.2 60 0.002 29.9 4.0 70 500-578 38-113 (253)
390 3eye_A PTS system N-acetylgala 24.2 1.4E+02 0.0049 25.4 6.0 81 152-241 19-100 (168)
391 3lkv_A Uncharacterized conserv 24.2 3.1E+02 0.01 25.6 9.3 113 32-161 140-255 (302)
392 2q5c_A NTRC family transcripti 23.9 2.4E+02 0.0082 24.6 7.7 50 69-127 117-166 (196)
393 2qr3_A Two-component system re 23.8 2.6E+02 0.0089 21.8 8.0 58 180-246 14-78 (140)
394 1y81_A Conserved hypothetical 23.8 91 0.0031 25.5 4.6 34 222-258 69-102 (138)
395 2lci_A Protein OR36; structura 23.5 2.3E+02 0.0077 21.0 8.2 46 149-197 60-105 (134)
396 1pvv_A Otcase, ornithine carba 23.5 4.8E+02 0.016 24.7 15.3 134 33-200 47-186 (315)
397 2b4l_A Glycine betaine-binding 23.1 2.7E+02 0.0093 25.7 8.4 78 501-587 182-266 (268)
398 2xij_A Methylmalonyl-COA mutas 23.0 7E+02 0.024 27.0 12.3 77 166-248 605-685 (762)
399 3hv2_A Response regulator/HD d 22.9 2.9E+02 0.01 22.1 8.5 68 166-246 15-84 (153)
400 3lvu_A ABC transporter, peripl 22.8 1.2E+02 0.004 27.7 5.8 41 500-549 145-185 (258)
401 1vlv_A Otcase, ornithine carba 22.7 5E+02 0.017 24.7 12.8 134 33-199 59-198 (325)
402 3hdv_A Response regulator; PSI 22.7 2.7E+02 0.0093 21.6 8.2 57 181-246 19-78 (136)
403 1uth_A LYSR-type regulatory pr 22.6 1.4E+02 0.0049 27.9 6.6 84 469-578 104-187 (315)
404 1js1_X Transcarbamylase; alpha 22.5 5.1E+02 0.017 24.7 11.3 137 33-200 37-203 (324)
405 3o6p_A Peptide ABC transporter 22.4 1.4E+02 0.005 26.4 6.3 54 167-228 100-155 (229)
406 1o1x_A Ribose-5-phosphate isom 22.1 3E+02 0.01 23.0 7.3 61 173-235 18-83 (155)
407 4evq_A Putative ABC transporte 22.0 2.2E+02 0.0076 27.3 8.1 81 164-247 15-107 (375)
408 3hzh_A Chemotaxis response reg 21.9 3E+02 0.01 22.2 7.8 58 181-246 48-109 (157)
409 3h5t_A Transcriptional regulat 21.8 1E+02 0.0036 29.8 5.5 78 165-247 68-152 (366)
410 3mw8_A Uroporphyrinogen-III sy 21.6 1.2E+02 0.004 27.4 5.5 86 153-244 106-193 (240)
411 3qja_A IGPS, indole-3-glycerol 21.6 3.4E+02 0.012 25.1 8.6 87 154-248 75-164 (272)
412 3he8_A Ribose-5-phosphate isom 21.5 3.1E+02 0.011 22.8 7.2 62 174-235 7-71 (149)
413 4h31_A Otcase, ornithine carba 21.5 5.6E+02 0.019 24.8 13.2 134 33-199 71-212 (358)
414 2gkg_A Response regulator homo 21.5 2.6E+02 0.009 21.1 7.1 57 180-245 16-75 (127)
415 3hut_A Putative branched-chain 21.4 2.2E+02 0.0074 27.2 7.8 79 166-247 5-97 (358)
416 3f2i_A ALR0221 protein; alpha- 21.4 2.4E+02 0.0083 23.9 7.1 92 147-245 27-124 (172)
417 2rbg_A Putative uncharacterize 21.3 3E+02 0.01 21.5 11.3 79 160-243 28-107 (126)
418 3s40_A Diacylglycerol kinase; 21.3 4E+02 0.014 24.9 9.4 76 164-244 7-85 (304)
419 2vvr_A Ribose-5-phosphate isom 21.2 3.5E+02 0.012 22.4 8.0 61 174-234 8-71 (149)
420 1mb3_A Cell division response 21.1 2.1E+02 0.0072 21.7 6.4 57 180-245 12-70 (124)
421 3lhk_A Putative DNA binding pr 21.0 1.2E+02 0.0042 25.2 5.0 73 500-576 24-101 (154)
422 3apt_A Methylenetetrahydrofola 21.0 5.3E+02 0.018 24.3 15.2 97 153-250 88-203 (310)
423 1q9u_A Uncharacterized protein 20.9 3.2E+02 0.011 21.7 7.9 66 179-253 16-83 (130)
424 3cfz_A UPF0100 protein MJ1186; 20.9 1.4E+02 0.0047 27.9 5.9 71 499-578 19-95 (292)
425 3g23_A Peptidase U61, LD-carbo 20.8 1.9E+02 0.0064 27.0 6.6 78 166-243 4-89 (274)
426 2i6u_A Otcase, ornithine carba 20.7 5.4E+02 0.018 24.3 13.7 135 33-200 40-180 (307)
427 4a29_A Engineered retro-aldol 20.7 3.6E+02 0.012 24.7 8.2 85 156-249 69-156 (258)
428 3cfx_A UPF0100 protein MA_0280 20.6 1.6E+02 0.0055 27.4 6.4 70 500-578 20-95 (296)
429 3bul_A Methionine synthase; tr 20.4 5.5E+02 0.019 26.8 10.6 86 165-258 98-187 (579)
430 3p9x_A Phosphoribosylglycinami 20.4 2.9E+02 0.01 24.4 7.5 77 153-235 16-94 (211)
431 1pc3_A Phosphate-binding prote 20.4 1.1E+02 0.0039 29.6 5.3 70 500-578 42-114 (350)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-67 Score=602.30 Aligned_cols=526 Identities=17% Similarity=0.296 Sum_probs=439.5
Q ss_pred CeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
++|+||+++|++.. ....|+++|+|+||+++ ++|+++++|+++ ++..+.+++|++++++|.+||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999854 78999999999999985 899999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~ 189 (633)
+.++++++..+++|+|++. .+.. ..++|+||+.|+ ++.+++++++++||++|++|| |++||....+.+++.+
T Consensus 73 ~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 9999999999999999973 3322 357899999999 789999999999999999999 7789999999999999
Q ss_pred hhcCcEEEEEeecCCC--CChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCC
Q 006736 190 AEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (633)
Q Consensus 190 ~~~g~~v~~~~~~~~~--~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 267 (633)
++.|++|+..+.++.. .+..+++.++++++++++|+|++++...++..++++|+++|++.++|+|+.++......+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999998877643 2368899999999999999999999999999999999999999999999999854332222
Q ss_pred ccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccC-CCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCccc
Q 006736 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (633)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~~ 346 (633)
.+......|++++.+..++.+.+++|.++|+++++.. +......++.+++++|||++++++|+++++.++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 2233455678899988999999999999999888642 33333456788999999999999999999876554321
Q ss_pred ccCcccccccCCCcccccc--cccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeecCCCC
Q 006736 347 SEDSKLSELSRGDMRFSSV--SIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (633)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~~ 424 (633)
+ ....+|... ..|.++..+.++|++++|+|++|++.||++|++....|+|++++++++.+||.|++..|
T Consensus 300 ~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g 370 (823)
T 3kg2_A 300 R---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDK 370 (823)
T ss_dssp S---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTE
T ss_pred C---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCC
Confidence 1 123345543 56778999999999999999999999999999999999999999999999999998876
Q ss_pred CcccCCccccCCCCCCCCCccccceeeeCCCCCCCCCcccccCCCceEEEEecCCCCCcCcEEec------CCCCceeee
Q 006736 425 LSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQG------KGTDKFSGY 498 (633)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~~~p~~~~~~~~~~~l~v~~~~~~~~~p~~~~~------~~~~~~~G~ 498 (633)
+....+ .. ...++++|+|++. .++||.+.. .+++++.||
T Consensus 371 ~~~~~~----------------------------~~----~~~~~~~l~v~~~---~~~P~~~~~~~~~~~~~~~~~~G~ 415 (823)
T 3kg2_A 371 MVLTED----------------------------DT----SGLEQKTVVVTTI---LESPYVMMKANHAALAGNERYEGY 415 (823)
T ss_dssp EEECCC----------------------------CC----SSCCCCCEEEEEC---CCTTTSEECTTGGGCCGGGGEESH
T ss_pred ceeccC----------------------------cc----cccCCCEEEEEEe---cCCCcEEEecCccccCCCCceEEE
Confidence 543210 00 1235789999997 567887763 246789999
Q ss_pred eHHHHHHHHHHCCCccceEEEeCCCCC------CCCCHHhHHHHHHcCcccEEEeeeEeeccccceeeeccceeecceEE
Q 006736 499 CIDVFTAVLELLPYAVPYKLVPFGDGH------NSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVV 572 (633)
Q Consensus 499 ~vdl~~~ia~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~ 572 (633)
|+||++++++++|++ ++++...+++ .|++|++++++|.+|++|++++++++|++|.+.+|||.||+..++++
T Consensus 416 ~~dl~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~ 493 (823)
T 3kg2_A 416 CVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISI 493 (823)
T ss_dssp HHHHHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEE
T ss_pred HHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEE
Confidence 999999999999988 5555444322 56789999999999999999999999999999999999999999999
Q ss_pred EEecCC-CCcCccccccCCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCC
Q 006736 573 VAPIKK-LNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGP 623 (633)
Q Consensus 573 lv~~~~-~~~~~~~~l~pf~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (633)
+++++. ...+++.|++||+..+|++++++++++++++|+++|++|.+|+.+
T Consensus 494 ~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~ 545 (823)
T 3kg2_A 494 MIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTE 545 (823)
T ss_dssp EEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC----------
T ss_pred EEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCc
Confidence 999887 457789999999999999999999999999999999988877643
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=4.7e-51 Score=424.06 Aligned_cols=373 Identities=16% Similarity=0.229 Sum_probs=317.8
Q ss_pred CCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCC-CCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAI-LGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~i-l~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
+++|+||+++|++.. ....|+++|+|+||+++++ |+|++|+++++|++| ++.+++.+++++++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 578999999999854 7899999999999999999 699999999999987 99999999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~ 187 (633)
..+.++++++..++||+|+++. +.++ ..+|.||+.|+ ++.++++++++++|++|++|| |++||....+.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998743 3333 34677888887 789999999999999999999 88999999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCC
Q 006736 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 267 (633)
.+++.|++|+..+.++. .+..|++.++++|+++++|+||+.+....+..++++++++|++.+.|+||+++.+....+.
T Consensus 152 ~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 229 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL- 229 (389)
T ss_dssp HHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-
T ss_pred HhhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccH-
Confidence 99999999998876653 2446899999999999999999999999999999999999999999999998865443332
Q ss_pred ccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccC-CCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCccc
Q 006736 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (633)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~~ 346 (633)
.+......|++++....++.+.+++|+++|+++++.+ ++.+...++.+++++|||++++++|++++..++..+++
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~ 305 (389)
T 3o21_A 230 ----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSR 305 (389)
T ss_dssp ----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred ----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 1233455678888888889999999999999988643 22222346788999999999999999999875543321
Q ss_pred ccCcccccccCCCccc--ccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeecCCCC
Q 006736 347 SEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (633)
Q Consensus 347 ~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~~ 424 (633)
+ +...+| ....+|.+|..|.++|++++|+|++|++.||++|+|.+..|+|++++++++++||+|++..|
T Consensus 306 ~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 306 R---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp -------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred C---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCC
Confidence 1 112345 33457888999999999999999999999999999988999999999999999999999988
Q ss_pred Cccc
Q 006736 425 LSVV 428 (633)
Q Consensus 425 l~~~ 428 (633)
++..
T Consensus 377 ~~~~ 380 (389)
T 3o21_A 377 FVPF 380 (389)
T ss_dssp EECC
T ss_pred cccc
Confidence 7643
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-49 Score=414.35 Aligned_cols=377 Identities=17% Similarity=0.229 Sum_probs=316.6
Q ss_pred CCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCC-CCcEEEEEEecC-CCChHHHHHHHHHHHhcCceEEEcCCc
Q 006736 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAIL-GGTKLKLTVHDT-NYSRFLGMVEALTLLENETVAIIGPQF 106 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il-~g~~l~~~~~D~-~~~~~~a~~~~~~li~~~v~aviG~~~ 106 (633)
.+++|+||++||.+ +.....|+++|+|+||++++++ ++.+|.+...++ ++++..+.+.+|++++++|.+||||.+
T Consensus 2 ~P~~I~IG~lf~~~---~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRN---TDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTT---CHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCC---ChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 46899999999987 4677899999999999999998 345555555544 357889999999999999999999999
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
|..+.++++++..++||+|+++++.+.. ..|++++| |.. +.++++++++++|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~--~~~---~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLR--PSL---RGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECS--CCC---HHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCcccc--CCH---HHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999986655432 23454444 442 46899999999999999999776665 4567788
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 266 (633)
+.+.+.|+++.....++ ....+++.++++++..++++||+.+...++..++++|+++|++.++++|+.++.+......
T Consensus 151 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 228 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL 228 (389)
T ss_dssp HHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC
T ss_pred HHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhh
Confidence 88999999999887766 6788999999999999999999999999999999999999999999999999876654433
Q ss_pred CccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCccc
Q 006736 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (633)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~~ 346 (633)
.+......|+.++....++.+.+++|.++|++.+..........++.+++++||||+++++||++++++......
T Consensus 229 -----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~ 303 (389)
T 4gpa_A 229 -----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISR 303 (389)
T ss_dssp -----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred -----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 344456678889999999999999999999988765444445667889999999999999999999887654321
Q ss_pred ccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeecCCCCCc
Q 006736 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLS 426 (633)
Q Consensus 347 ~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~~l~ 426 (633)
. ....++.|.....|++|..|.++|++++|+|++|+|.||++|+|.+..|+|+|++++++++||+|++.+||.
T Consensus 304 ~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~ 376 (389)
T 4gpa_A 304 R-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLV 376 (389)
T ss_dssp T-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred c-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeE
Confidence 1 123455677778899999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCC
Q 006736 427 VVPP 430 (633)
Q Consensus 427 ~~~~ 430 (633)
+..+
T Consensus 377 ~~~~ 380 (389)
T 4gpa_A 377 LIQD 380 (389)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7544
No 4
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=2.7e-49 Score=412.53 Aligned_cols=375 Identities=19% Similarity=0.266 Sum_probs=310.4
Q ss_pred CeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCCh-HHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSR-FLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~-~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
++||||+++|+++..|.....|+++|+|+||+++++|+|++|+++++|+++++ ..+..++|++++++|.+||||.+|..
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 47999999999999999999999999999999999999999999999999975 45667889999889999999999954
Q ss_pred -HHHHHHhhccCCccEEeeccCCCCCccCCCCce--EEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHH
Q 006736 110 -AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFF--VRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 110 -~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~--~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+.++++++..+++|+|+++++.. ....+|++ ||+.|++..++.++++++++++|++|++|++|++||....+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~- 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV- 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-
T ss_pred HHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-
Confidence 57999999999999999877641 12467888 9999999999999999999999999999999999998776655
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 266 (633)
+.+.+.|++|.... ++ +..|++.++++|++.++|+|++.+...++..++++++++|++.+.|+|+.+++.....+.
T Consensus 160 ~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l 235 (393)
T 3om0_A 160 RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHL 235 (393)
T ss_dssp HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCC
T ss_pred HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccch
Confidence 45677899987654 43 456899999999999999999999999999999999999999889999998865443332
Q ss_pred CccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccCCCC-CCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCcc
Q 006736 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN-GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (633)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~ 345 (633)
. .......|+.++....++.+.+++|.++|+++|+..... +...++.+++++|||++++++|++++.+...
T Consensus 236 ~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~--- 307 (393)
T 3om0_A 236 D-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE--- 307 (393)
T ss_dssp T-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC---
T ss_pred h-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc---
Confidence 1 122455688888888888899999999999988732111 1124677899999999999999999864321
Q ss_pred cccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeecCCCCC
Q 006736 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGL 425 (633)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~~l 425 (633)
.......|.....|.++..+.++|++++|+|++|++.||++|++.+..|+|++++++++++||.|++..|+
T Consensus 308 ---------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl 378 (393)
T 3om0_A 308 ---------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTL 378 (393)
T ss_dssp ---------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC---
T ss_pred ---------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCc
Confidence 12234567777788889999999999999999999999999999889999999999999999999999887
Q ss_pred cccC
Q 006736 426 SVVP 429 (633)
Q Consensus 426 ~~~~ 429 (633)
++..
T Consensus 379 ~~~~ 382 (393)
T 3om0_A 379 AMNA 382 (393)
T ss_dssp ----
T ss_pred cccc
Confidence 6653
No 5
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.5e-49 Score=420.08 Aligned_cols=386 Identities=20% Similarity=0.324 Sum_probs=323.2
Q ss_pred CCCCeEEEEEEeecCC-----ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CceE
Q 006736 28 TIPPVLNIGAVFALNS-----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVA 100 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~-----~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~a 100 (633)
...++|+||+++|++. ..|.....|+++|+|+||++ |+++|++|+++++|+++++..++..+++++.+ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 3467899999999985 45778999999999999999 77789999999999999999999999999985 8999
Q ss_pred EEcCCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcc
Q 006736 101 IIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGR 179 (633)
Q Consensus 101 viG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~ 179 (633)
||||.+|..+.++++++..+++|+|+++++++.+++ ..|||+||+.|++..++.++++++++++|++|++|++|++||.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999988 5799999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 259 (633)
...+.+++.+++.|++|+....++ .++..++++++++++|+|++++...++..++++++++|++..+|+||++++
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 243 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGW 243 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESC
T ss_pred HHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCc
Confidence 999999999999999999888776 367889999999999999999999999999999999999988899999987
Q ss_pred cccccC--------CCccccccccccccceEEEeeecCCC--------hHHHHHHHHHHHh-hccCCCCCCCCCCchhHH
Q 006736 260 LSSILD--------TDSQLHSEKMDDIQGVLTLRMYTQSS--------EEKRKFVTRWRHL-TRRNTLNGPIGLNSFGLY 322 (633)
Q Consensus 260 ~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~ 322 (633)
...... ..........++.+|++++.++.+.. +..++|.++|+++ ++ ..++.++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~-------~~~~~~a~~ 316 (433)
T 4f11_A 244 YEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG-------VGPSKFHGY 316 (433)
T ss_dssp SCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT-------SCCCTTHHH
T ss_pred chHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC-------CCcccchhh
Confidence 332211 00111133457789999998866532 3478899999987 43 456788999
Q ss_pred HhhHHHHHHHHHHHhhhcCCCcccccCcccccccCCCcccc--cccccCchHHHHHHHHhccccccccceEEccCCCCCC
Q 006736 323 AYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFS--SVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLIN 400 (633)
Q Consensus 323 ~yDav~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~ 400 (633)
+|||++++++|+++++.+.... ..+.+|. +...|.++..|.++|++++|+|++|+|.| ++|+|.
T Consensus 317 ~YDAv~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~- 382 (433)
T 4f11_A 317 AYDGIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM- 382 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-
Confidence 9999999999999986531100 0000111 11234468999999999999999999999 899986
Q ss_pred CcEEEEEeecCCeeEEeeecCCCCCcccCCccccCCCCCCCCCccccceeeeCCCCC
Q 006736 401 PAYEVINVIGTGSRRIGYWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTT 457 (633)
Q Consensus 401 ~~~~I~~~~~~~~~~vg~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~ 457 (633)
..|.|++++++.+++||.|++..+ . ...+...|.|||+.+
T Consensus 383 ~~~~I~~~~~g~~~~VG~~~~~~~-~----------------l~~~~~~i~W~~~~~ 422 (433)
T 4f11_A 383 GTIKFTQFQDSREVKVGEYNAVAD-T----------------LEIINDTIRFQGSEP 422 (433)
T ss_dssp CEEEEEEEETTEEEEEEEEETTTT-E----------------EEECTTTCCCSSSSC
T ss_pred eeEEEEEEECCceEEEEEEECCCC-e----------------EEEeCCceECCCCCC
Confidence 899999999999999999986432 0 112234789999884
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=9.9e-49 Score=408.64 Aligned_cols=375 Identities=21% Similarity=0.272 Sum_probs=320.1
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~-~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
+++|+||+++|++ ...|.....|+++|+|+||+++++|+|++|++++.|.. .|+..+...+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 4689999999997 45688899999999999999999998899999998877 588889999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~ 187 (633)
..+.++++++..+++|+|+++++++.+++. .+|+||+.|++..++.++++++++++|++|++|+ |++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999999888763 5789999999999999999999999999999998 67899999999999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCC
Q 006736 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 267 (633)
.+++.|+++.... ++ .+..+++.++++++++++|+|++++...++..++++++++|++.+.|+|++++......+..
T Consensus 160 ~~~~~g~~v~~~~-~~--~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~ 236 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LP--ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVE 236 (395)
T ss_dssp GGGTSSCEEEEEE-CC--SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCT
T ss_pred hhhcCCceEEEEE-eC--CCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechH
Confidence 9999999998875 76 45789999999999999999999999999999999999999999999999986433222221
Q ss_pred ccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccC-CC----CCCCCCCchhHHHhhHHHHHHHHHHHhhhcCC
Q 006736 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TL----NGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (633)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~----~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~ 342 (633)
.......++.++....++++..++|.++|++++... +. .....++.+++++|||++++++|++++...
T Consensus 237 -----~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~-- 309 (395)
T 3h6g_A 237 -----PYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM-- 309 (395)
T ss_dssp -----TTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC--
T ss_pred -----HhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC--
Confidence 111111235677777888999999999999866321 11 111235679999999999999999987432
Q ss_pred CcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEcc-CCCCCCCcEEEEEeecCCeeEEeeecC
Q 006736 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTS-DRDLINPAYEVINVIGTGSRRIGYWSN 421 (633)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~-~g~r~~~~~~I~~~~~~~~~~vg~w~~ 421 (633)
......|.....|.++..+.++|++++|+|++|+++||+ +|+|.+..|.|++++++++++||.|++
T Consensus 310 -------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~ 376 (395)
T 3h6g_A 310 -------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDP 376 (395)
T ss_dssp -------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEET
T ss_pred -------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcC
Confidence 223456877778999999999999999999999999999 999998999999999999999999999
Q ss_pred CCCCcccC
Q 006736 422 HSGLSVVP 429 (633)
Q Consensus 422 ~~~l~~~~ 429 (633)
..|+++..
T Consensus 377 ~~g~~~~~ 384 (395)
T 3h6g_A 377 ASGLNMTE 384 (395)
T ss_dssp TTEECCCC
T ss_pred CCCccccC
Confidence 98876543
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.5e-48 Score=403.87 Aligned_cols=367 Identities=17% Similarity=0.248 Sum_probs=294.2
Q ss_pred CeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~-~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
.+|+||+++|++. ...+.|+++|+|+||++ |++|++++.|++ +|+.++++++|++++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence 3699999999984 46799999999999997 689999999965 59999999999999999999999999999
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~ 189 (633)
+.++++++..++||+|++++. . ...++|+||+.|+ ++.+++++++++||++|++|+ |++||....+.+++.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHh
Confidence 999999999999999998663 2 2346889999887 789999999999999999999 8899999999999999
Q ss_pred hhcCcEEEEEeecCCC--CChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCC
Q 006736 190 AEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (633)
Q Consensus 190 ~~~g~~v~~~~~~~~~--~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 267 (633)
++.|++|.....++.. .+..+++.++++|++.++|+|++.+....+..++++++++||+.+.|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred hhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-
Confidence 9999999987765432 2367899999999999999999999999999999999999999889999998743222221
Q ss_pred ccccccccccccceEEEeeecCCChHHHHHHHHHHHhhcc-CCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCccc
Q 006736 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (633)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~~ 346 (633)
.+......+++++....++.+..++|+++|+++++. +++.+...++.+++++|||++++++|++++.+++...+.
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 122233345788888888899999999999998863 222222357889999999999999999999876443221
Q ss_pred ccCcccccccCCCccc--ccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeecCCCC
Q 006736 347 SEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (633)
Q Consensus 347 ~~~~~~~~~~~~~~~c--~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~~ 424 (633)
.+....| ....+|.++..|+++|++++|+|++|++.||++|+|.+..|+|++++++++++||+|++..|
T Consensus 300 ---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 370 (376)
T 3hsy_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDK 370 (376)
T ss_dssp ---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTE
T ss_pred ---------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCC
Confidence 1123346 55567888999999999999999999999999999999999999999999999999999888
Q ss_pred Ccc
Q 006736 425 LSV 427 (633)
Q Consensus 425 l~~ 427 (633)
++.
T Consensus 371 ~~~ 373 (376)
T 3hsy_A 371 MVV 373 (376)
T ss_dssp EEE
T ss_pred cee
Confidence 653
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-47 Score=398.85 Aligned_cols=370 Identities=18% Similarity=0.247 Sum_probs=313.2
Q ss_pred CCCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCceEEEcCCc
Q 006736 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQF 106 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aviG~~~ 106 (633)
..+++||||+++|++.. ....|+++|+|+||+++ +|++++.|+++ ++.++++++|++++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45789999999999854 78999999999999874 99999999886 9999999999999999999999999
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
|..+.++++++..+++|+|++. ++.++ ..+|.||+.|+ ++.+++++++++||++|++|+ |++||....+.++
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999974 34443 45778888887 789999999999999999999 6789999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 266 (633)
+.+++.|++|+....++ .+..++..++.+|+++++|+|++++...++..++++++++|++.+.|+||+++.+....+.
T Consensus 149 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 226 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL 226 (384)
T ss_dssp HHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH
T ss_pred HHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH
Confidence 99999999999887554 4678999999999999999999999999999999999999999889999998854322221
Q ss_pred CccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccC-CCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCcc
Q 006736 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (633)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~ 345 (633)
........|++++.++.++.+..++|.++|+++++.. ++.+...++.+++++|||++++++|++++...+.+++
T Consensus 227 -----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~ 301 (384)
T 3saj_A 227 -----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDIS 301 (384)
T ss_dssp -----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 1233445678889888899999999999999998642 2222234567899999999999999999987654432
Q ss_pred cccCcccccccCCCcccccc--cccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeecCCC
Q 006736 346 FSEDSKLSELSRGDMRFSSV--SIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHS 423 (633)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~--~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~~~ 423 (633)
.+ +....|... ..|.++..|.++|++++|+|++|++.||++|++.+..|+|++++++++.+||.|++..
T Consensus 302 ~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~ 372 (384)
T 3saj_A 302 RR---------GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDD 372 (384)
T ss_dssp CC---------CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred cC---------CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCC
Confidence 11 123356543 4678899999999999999999999999999999999999999999999999999998
Q ss_pred CCcccCC
Q 006736 424 GLSVVPP 430 (633)
Q Consensus 424 ~l~~~~~ 430 (633)
|+++..+
T Consensus 373 gl~~~~~ 379 (384)
T 3saj_A 373 KFVPAAL 379 (384)
T ss_dssp EEEECCC
T ss_pred CccccCc
Confidence 8766544
No 9
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=5.4e-47 Score=411.76 Aligned_cols=393 Identities=21% Similarity=0.355 Sum_probs=321.3
Q ss_pred CCCCeEEEEEEeecCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 006736 28 TIPPVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLL 94 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~-------------~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li 94 (633)
..+++|+||+++|++. ..|.....|+++|+|+||+++++|||++|+++++|+++++..+++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 3567899999999973 356788899999999999999999999999999999999999999988877
Q ss_pred h-------------------------cCceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCC
Q 006736 95 E-------------------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQS 148 (633)
Q Consensus 95 ~-------------------------~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~ 148 (633)
+ ++|.+|||+.+|..+.++++++..+++|+|+++++++.|++ .+||++||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 48999999999999999999999999999999999999998 579999999999
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEE
Q 006736 149 DLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILI 227 (633)
Q Consensus 149 ~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIv 227 (633)
+..++.+++++++++||++|++|++|++||....+.|++.+++.|++|+..+.++...+..++..+++++++ +++++||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi 249 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 249 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEE
Confidence 999999999999999999999999999999999999999999999999998888753467889999999964 7999999
Q ss_pred EeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCCccccccccccccceEEEeeecCCChHHHHH----------
Q 006736 228 LHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKF---------- 297 (633)
Q Consensus 228 l~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f---------- 297 (633)
+++...++..++++++++|+ +++||+++.|....... ....+..+|++++.++..+.+.+++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p 322 (555)
T 2e4u_A 250 LFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNH 322 (555)
T ss_dssp EECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCC
Confidence 99999999999999999887 68999999876532221 11235678999988776555555444
Q ss_pred -----HHHHHHhhcc-----------CCCCCCC-----CCCchhHHHhhHHHHHHHHHHHhhhcCCCcccccCccccccc
Q 006736 298 -----VTRWRHLTRR-----------NTLNGPI-----GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELS 356 (633)
Q Consensus 298 -----~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~~~~~~~~~~~~ 356 (633)
.+.|+.+|+. |++.+.. .+..++..+||||+++++||++++.+...
T Consensus 323 ~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~------------- 389 (555)
T 2e4u_A 323 RNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP------------- 389 (555)
T ss_dssp TCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCT-------------
T ss_pred CCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcC-------------
Confidence 4456666653 2222221 14467889999999999999998753111
Q ss_pred CCCcccccccccCchHHHHH-HHHhcccc------ccccc-eEEccCCCCCCCcEEEEEee--cC--CeeEEeeecCCCC
Q 006736 357 RGDMRFSSVSIFNGGKMLLD-NILQVNMT------GVTGP-IKFTSDRDLINPAYEVINVI--GT--GSRRIGYWSNHSG 424 (633)
Q Consensus 357 ~~~~~c~~~~~~~~~~~l~~-~l~~~~f~------g~~G~-v~Fd~~g~r~~~~~~I~~~~--~~--~~~~vg~w~~~~~ 424 (633)
.....|...... ++++|.+ +|++++|+ |++|. |.||++|++. ..|+|++++ ++ .+++||.|++ +
T Consensus 390 ~~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~ 465 (555)
T 2e4u_A 390 QTTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--T 465 (555)
T ss_dssp TCSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--S
T ss_pred CCCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--e
Confidence 001124332222 4889999 99999999 99998 9999999975 889999996 23 4799999984 3
Q ss_pred CcccCCccccCCCCCCCCCccccceeeeCCCCCCCCCccc
Q 006736 425 LSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWV 464 (633)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~~~p~~~~ 464 (633)
|. .+...|.|++ .++|.|.|
T Consensus 466 l~------------------i~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 466 LS------------------LDVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp EE------------------CCGGGCCCTT--SSCCCCCS
T ss_pred EE------------------EeccccccCC--CCCcceee
Confidence 32 2345799987 57888887
No 10
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=3.2e-47 Score=404.68 Aligned_cols=388 Identities=22% Similarity=0.357 Sum_probs=316.6
Q ss_pred CCCCCeEEEEEEeecC------------C-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHH
Q 006736 27 STIPPVLNIGAVFALN------------S-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTL 93 (633)
Q Consensus 27 ~~~~~~i~IG~l~p~~------------~-~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~l 93 (633)
...+++|.||++||++ . ..|.+...|+++|+|+||+++++|||++|+++++|+++++..+++.+.++
T Consensus 8 ~~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~l 87 (479)
T 3sm9_A 8 IKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEF 87 (479)
T ss_dssp EEECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHH
Confidence 3457899999999996 1 15678899999999999999999999999999999999999999999999
Q ss_pred Hhc-------------------------CceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecC
Q 006736 94 LEN-------------------------ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQ 147 (633)
Q Consensus 94 i~~-------------------------~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p 147 (633)
+.+ +|.+||||.+|..+.++++++..+++|+|+++++++.+++ .+||++||+.|
T Consensus 88 l~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p 167 (479)
T 3sm9_A 88 VRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP 167 (479)
T ss_dssp HHTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSC
T ss_pred HhCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCC
Confidence 874 5999999999999999999999999999999999999998 57999999999
Q ss_pred ChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHH-HHhhcCCCeEE
Q 006736 148 SDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRIL 226 (633)
Q Consensus 148 ~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l-~~i~~~~~~vI 226 (633)
++..++.+++++++++||++|++|++|++||....+.+++.+++.|+||+..+.++...+..++...+ +.++++++++|
T Consensus 168 sd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vI 247 (479)
T 3sm9_A 168 PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVV 247 (479)
T ss_dssp CTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEE
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999998887554567899988 66888999999
Q ss_pred EEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCCccccccccccccceEEEeeecCCChHHHHHHHH------
Q 006736 227 ILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTR------ 300 (633)
Q Consensus 227 vl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------ 300 (633)
|+++...++..++++++++|++ ++||+++.|....... .......+|++++.++..+.+.+++|+..
T Consensus 248 i~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 248 VLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESII----KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp EEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH----TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCcccc----ccccccCceEEEEEeccCCCcchhhHhhccCcCcC
Confidence 9999999999999999999986 7999999886532111 11225678999999999888888888643
Q ss_pred ---------HHHhhcc-----------CCCCCCC-----CCCchhHHHhhHHHHHHHHHHHhhhcCCCcccccCcccccc
Q 006736 301 ---------WRHLTRR-----------NTLNGPI-----GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSEL 355 (633)
Q Consensus 301 ---------~~~~~~~-----------~~~~~~~-----~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~~~~~~~~~~~ 355 (633)
|+..|++ |++.+.. ........+||||+++|+||++++.+.+.
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~------------ 388 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP------------ 388 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST------------
T ss_pred CCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcC------------
Confidence 4545542 3332222 11233468999999999999999764221
Q ss_pred cCCCcccccccccCchHHHH-HHHHhcccccc------cc-ceEEccCCCCCCCcEEEEEeec--C--CeeEEeeecCCC
Q 006736 356 SRGDMRFSSVSIFNGGKMLL-DNILQVNMTGV------TG-PIKFTSDRDLINPAYEVINVIG--T--GSRRIGYWSNHS 423 (633)
Q Consensus 356 ~~~~~~c~~~~~~~~~~~l~-~~l~~~~f~g~------~G-~v~Fd~~g~r~~~~~~I~~~~~--~--~~~~vg~w~~~~ 423 (633)
.....|.....+ ++++|. ++|++++|.+. +| .|.||++|++ ...|+|+|++. + .+++||.|+ .
T Consensus 389 -~~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~--~ 463 (479)
T 3sm9_A 389 -NTTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA--E 463 (479)
T ss_dssp -TCSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES--S
T ss_pred -CCCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe--c
Confidence 111235443333 488999 99999999998 45 6999999997 58999999973 2 468999997 3
Q ss_pred CCcccCCccccCCCCCCCCCccccceeeeCCCC
Q 006736 424 GLSVVPPEALYKEPSNRSASSQHLYSAVWPGQT 456 (633)
Q Consensus 424 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~ 456 (633)
.|. .+...|.|+++.
T Consensus 464 ~l~------------------i~~~~I~W~~~~ 478 (479)
T 3sm9_A 464 TLS------------------LDVNSIHWSRNS 478 (479)
T ss_dssp SEE------------------ECGGGCCCC---
T ss_pred eEE------------------EecceeEeCCCC
Confidence 332 344578998764
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=2.8e-47 Score=403.17 Aligned_cols=379 Identities=17% Similarity=0.202 Sum_probs=312.2
Q ss_pred CeEEEEEEeecC---CccchhHHH-HHHHHHHHHhcCCCCCCCcEEEEEEecC-----CCChHHHHHHHHHHHh-cCceE
Q 006736 31 PVLNIGAVFALN---STIGKVAKV-AIEAAVEDVNSNPAILGGTKLKLTVHDT-----NYSRFLGMVEALTLLE-NETVA 100 (633)
Q Consensus 31 ~~i~IG~l~p~~---~~~g~~~~~-a~~~Ave~iN~~~~il~g~~l~~~~~D~-----~~~~~~a~~~~~~li~-~~v~a 100 (633)
++|+||+++|++ +..|..... |+++|+|+||+++++|+|++|+++++|+ +|++..++..+.+++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999998 356667777 9999999999999999999999999999 4556678778877774 59999
Q ss_pred EEcCCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEE------Ee
Q 006736 101 IIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIAL------YV 173 (633)
Q Consensus 101 viG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii------~~ 173 (633)
||||.+|..+.++++++..+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++| +.
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 999999999999999999999999999999999988 45999999999999999999999999999999999 66
Q ss_pred cCCCcchhHHHHHHHHhh-cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCe
Q 006736 174 DDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (633)
Q Consensus 174 d~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~ 252 (633)
+++|| ...+.+.+.+.+ .|++|.....++ .+..++..++++|++ ++|+|++++...++..++++++++|+..+++
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCE
Confidence 66777 555777788888 999999887664 467889999999998 9999999999999999999999999987779
Q ss_pred EEEEeCccccccCC-------Ccc-----ccccccccccceEEEeeecCCChHHHHHHHHHHHhhcc---CCCCCCCCCC
Q 006736 253 VWIVTDWLSSILDT-------DSQ-----LHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR---NTLNGPIGLN 317 (633)
Q Consensus 253 ~~i~~~~~~~~~~~-------~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~ 317 (633)
+||+++.+...... ... ..+.+.++.+|++.+.+..|+.+.+++|.++|+++++. |+.. ...++
T Consensus 237 ~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~ 315 (435)
T 1dp4_A 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVE-DGLKN 315 (435)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCC-CSGGG
T ss_pred EEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccc-cchhh
Confidence 99999876543210 000 01223456789888888778888999999999887753 2211 11356
Q ss_pred chhHHHhhHHHHHHHHHHHhhhcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCC
Q 006736 318 SFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRD 397 (633)
Q Consensus 318 ~~~~~~yDav~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~ 397 (633)
.++.++|||++++++|+++++.++.. +.+++.|.++|++++|+|++|++.||++|+
T Consensus 316 ~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~ 371 (435)
T 1dp4_A 316 IIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGD 371 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCCC
Confidence 68899999999999999998654321 124889999999999999999999999999
Q ss_pred CCCCcEEEEEe--ecCCeeEEeeecCCCC-CcccCCccccCCCCCCCCCccccceeeeCCCC
Q 006736 398 LINPAYEVINV--IGTGSRRIGYWSNHSG-LSVVPPEALYKEPSNRSASSQHLYSAVWPGQT 456 (633)
Q Consensus 398 r~~~~~~I~~~--~~~~~~~vg~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~ 456 (633)
+. ..|.|+++ .++.+++||.|++..+ +.+ .+...|.||++.
T Consensus 372 ~~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~-----------------~~~~~i~W~~~~ 415 (435)
T 1dp4_A 372 RD-TDFSLWDMDPETGAFRVVLNYNGTSQELMA-----------------VSEHKLYWPLGY 415 (435)
T ss_dssp BC-CCEEEEEECTTTCCEEEEEEECTTTCCEEE-----------------STTCCCCCTTSS
T ss_pred cc-ceeEEEEecCCCCcEEEEEEecCCCceEEE-----------------cCCceeeCCCCC
Confidence 86 79999999 4567999999987653 111 133579999884
No 12
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=7.4e-47 Score=400.32 Aligned_cols=366 Identities=16% Similarity=0.214 Sum_probs=298.6
Q ss_pred CCCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCC----CCCCcEEEEEEecCCCChHHHHHHHHHHH----hcC
Q 006736 29 IPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPA----ILGGTKLKLTVHDTNYSRFLGMVEALTLL----ENE 97 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~----il~g~~l~~~~~D~~~~~~~a~~~~~~li----~~~ 97 (633)
.+++|+||+++|++. ..|.....|+++|+|+||++++ +|+|++|+++++|++|++. ++..+.+++ .++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 357899999999983 3456778999999999999998 8899999999999999988 766555543 338
Q ss_pred ceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCccC--CCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC
Q 006736 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSL--QYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD 175 (633)
Q Consensus 98 v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~--~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~ 175 (633)
|.+||||.+|..+.++++++..+++|+|+++++++.++++ .|||+||+.|++..++.++++++++++|++|++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999884 79999999999999999999999999999999999999
Q ss_pred CCcch---hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCe
Q 006736 176 DHGRN---GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (633)
Q Consensus 176 ~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~ 252 (633)
+||+. ..+.+++.+++.|+||.....++ .+..++..++++|+ +++|+|++++...++..++++++++|+..+.+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~ 241 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDE--TKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 241 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECT--TSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTC
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecC--CcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCE
Confidence 99999 99999999999999999877665 34457999999999 89999999999999999999999999988889
Q ss_pred EEEEeCcccc------ccCCCccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccC-CCCCCCCCCchhHHHhh
Q 006736 253 VWIVTDWLSS------ILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNGPIGLNSFGLYAYD 325 (633)
Q Consensus 253 ~~i~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~yD 325 (633)
+||+++.... .................++.++....++.+.+++|.++|++++... .+ ....++.++.++||
T Consensus 242 v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~-~~~~~~~~~~~~Yd 320 (441)
T 1jdp_A 242 AFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLN-MEDYVNMFVEGFHD 320 (441)
T ss_dssp EEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCC-CCSSCCHHHHHHHH
T ss_pred EEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCC-ccchhhhHHHHHHH
Confidence 9999883211 0000000001011234556667777778899999999999874321 01 11134568899999
Q ss_pred HHHHHHHHHHHhhhcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEE
Q 006736 326 TLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEV 405 (633)
Q Consensus 326 av~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I 405 (633)
||+++++|+++++.++.. +.++..|.++|++++|+|++|+|.||++|++. ..|+|
T Consensus 321 Av~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I 375 (441)
T 1jdp_A 321 AILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSV 375 (441)
T ss_dssp HHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEE
T ss_pred HHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEE
Confidence 999999999998654210 23588999999999999999999999999975 88999
Q ss_pred EEee---cCCeeEEeeecCCCC
Q 006736 406 INVI---GTGSRRIGYWSNHSG 424 (633)
Q Consensus 406 ~~~~---~~~~~~vg~w~~~~~ 424 (633)
++++ ++.+++||.|++..+
T Consensus 376 ~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 376 IAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEETTTTEEEEEEEEETTTT
T ss_pred EecccCCCCceEEEEEEcCCCC
Confidence 9996 356899999998654
No 13
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=4.9e-47 Score=394.14 Aligned_cols=338 Identities=21% Similarity=0.300 Sum_probs=283.0
Q ss_pred CCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHH-HHhcCceEEEc----
Q 006736 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALT-LLENETVAIIG---- 103 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~-li~~~v~aviG---- 103 (633)
.+++|+||+++|++ ....|+++|+++||++++. .+++++++..|+++|+.++...+++ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 35789999999998 5799999999999999865 5799999999999999999977666 78889999999
Q ss_pred -CCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchh
Q 006736 104 -PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNG 181 (633)
Q Consensus 104 -~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~ 181 (633)
|.++..+.++++++..+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++|++|++||...
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567778889999999999999999999999987 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcEE-----------EE----------EeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHH
Q 006736 182 IAALGDKLAEKRCRL-----------SH----------KVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (633)
Q Consensus 182 ~~~~~~~~~~~g~~v-----------~~----------~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 240 (633)
.+.|++.+++.|+++ .+ ...+. .+..++..++++++++++|+||+++...++..+++
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~--~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~ 233 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFE--PGTKNLTALLLEAKELEARVIILSASEDDATAVYK 233 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEEC--TTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccC--CchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 999999999998753 21 11222 34578999999999999999999999999999999
Q ss_pred HHHHcCCCCCCeEEEEeCccccccCCCccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccCCCCCCCCCCchh
Q 006736 241 AAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFG 320 (633)
Q Consensus 241 ~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 320 (633)
+++++|+++++|+||+++.+... ....+...|+++++++.++. .+
T Consensus 234 ~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~---------------------------~~ 278 (384)
T 3qek_A 234 SAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN---------------------------ES 278 (384)
T ss_dssp HHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC---------------------------HH
T ss_pred HHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc---------------------------hh
Confidence 99999999888999999976532 12336778999999875532 26
Q ss_pred HHHhhHHHHHHHHHHHhhhcCCCcccccCcccccccCCCccc-ccccccCchHHHHHHHHhccc-cccccceEEccCCCC
Q 006736 321 LYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRF-SSVSIFNGGKMLLDNILQVNM-TGVTGPIKFTSDRDL 398 (633)
Q Consensus 321 ~~~yDav~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c-~~~~~~~~~~~l~~~l~~~~f-~g~~G~v~Fd~~g~r 398 (633)
+++||||+++++|+++++.+... ......| .....|+.+..|.+++++++| +|++|++.||++|++
T Consensus 279 ~~~YdAV~~~a~Al~~~~~~~~~------------~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~ 346 (384)
T 3qek_A 279 AHISDAVAVVAQAIHELFEMENI------------TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDR 346 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSC------------CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCB
T ss_pred HHHHHHHHHHHHHHHHHHhccCC------------CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCC
Confidence 78999999999999999765421 1112234 345578889999999999998 999999999999998
Q ss_pred CCCcEEEEEeecCCeeEEeeecC
Q 006736 399 INPAYEVINVIGTGSRRIGYWSN 421 (633)
Q Consensus 399 ~~~~~~I~~~~~~~~~~vg~w~~ 421 (633)
.+..|+|+|++++++++||.|++
T Consensus 347 ~~~~~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 347 KFAQYSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp CSCCEEEEEEETTEEEEEEEECS
T ss_pred CcccEEEEEEcCCceEEEEEEeC
Confidence 78999999999999999999984
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=3.7e-46 Score=398.22 Aligned_cols=396 Identities=19% Similarity=0.331 Sum_probs=314.6
Q ss_pred CCCCCeEEEEEEeecCC-----------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHH
Q 006736 27 STIPPVLNIGAVFALNS-----------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVE 89 (633)
Q Consensus 27 ~~~~~~i~IG~l~p~~~-----------------~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~ 89 (633)
...+++|.||++||.+. ..|.+...|+.+|+|+||+++++|||++|+++++|+++++..+++.
T Consensus 12 ~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~ 91 (496)
T 3ks9_A 12 ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQ 91 (496)
T ss_dssp EEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHH
T ss_pred eecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHH
Confidence 45688999999999872 1245778999999999999999999999999999999999999999
Q ss_pred HHHHH-----------------------------hcCceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCC
Q 006736 90 ALTLL-----------------------------ENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQY 139 (633)
Q Consensus 90 ~~~li-----------------------------~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~ 139 (633)
+.+++ +++|.+|||+.+|..+.++++++..+++|+|+++++++.+++ .+|
T Consensus 92 a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~ 171 (496)
T 3ks9_A 92 SIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLY 171 (496)
T ss_dssp HHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTC
T ss_pred HHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCC
Confidence 99987 348999999999999999999999999999999999999998 569
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~ 219 (633)
|++||+.|++..++.+++++++++||++|++|++|++||....+.+++.+++.|+||+..+.++...+..++..++++|+
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~ 251 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLR 251 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888865567789999999999
Q ss_pred cC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCCccccccccccccceEEEeeecCCChHHHHH
Q 006736 220 SM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKF 297 (633)
Q Consensus 220 ~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f 297 (633)
+. ++++|++++...++..++++++++|++. .+.||++++|....... ........|++++.++.++.+.+++|
T Consensus 252 ~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f 326 (496)
T 3ks9_A 252 ERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDDY 326 (496)
T ss_dssp TTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHHH
T ss_pred hccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHhH
Confidence 84 8999999999999999999999999874 46899999886432211 12335678999999999999999888
Q ss_pred HHH---------------HHHhhcc---------------CCCCCCCC----CCchhHHHhhHHHHHHHHHHHhhhcCCC
Q 006736 298 VTR---------------WRHLTRR---------------NTLNGPIG----LNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (633)
Q Consensus 298 ~~~---------------~~~~~~~---------------~~~~~~~~----~~~~~~~~yDav~~~~~Al~~~~~~~~~ 343 (633)
+.. |...|++ |++.+... .......+|+||+++|+|||+++.+.+.
T Consensus 327 l~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~ 406 (496)
T 3ks9_A 327 FLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCP 406 (496)
T ss_dssp HTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 743 4444432 22222211 1122356999999999999999754221
Q ss_pred cccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccc-eEEccCCCCCCCcEEEEEeec---C--CeeEEe
Q 006736 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGP-IKFTSDRDLINPAYEVINVIG---T--GSRRIG 417 (633)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~-v~Fd~~g~r~~~~~~I~~~~~---~--~~~~vg 417 (633)
.....|.....+ ++++|.++|++++|.+.+|+ |.||++|+. ...|+|+|++. + .+++||
T Consensus 407 -------------~~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG 471 (496)
T 3ks9_A 407 -------------GHVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVG 471 (496)
T ss_dssp -------------TCSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEE
T ss_pred -------------CCCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEE
Confidence 112245544445 48899999999999999995 999999996 47999999973 2 468999
Q ss_pred eecCCCCCcccCCccccCCCCCCCCCccccceeeeCCCCCCCCCc
Q 006736 418 YWSNHSGLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRG 462 (633)
Q Consensus 418 ~w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~~~p~~ 462 (633)
.|+. ..|.+ +...| |.++..++|++
T Consensus 472 ~~~~-~~l~i------------------~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 472 TWHE-GVLNI------------------DDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EEET-TEEEE------------------CTTTC------------
T ss_pred EEeC-CeEEE------------------ehhhc-ccCCCCCCCCC
Confidence 9973 22322 23456 87776667653
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.1e-46 Score=401.79 Aligned_cols=374 Identities=24% Similarity=0.379 Sum_probs=282.5
Q ss_pred CCCCCeEEEEEEeecCC-------------ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHH
Q 006736 27 STIPPVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTL 93 (633)
Q Consensus 27 ~~~~~~i~IG~l~p~~~-------------~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~l 93 (633)
...+++|+||+++|++. ..|.+...|+++|+|+||+++++|||++|+++++|+++++..+++.+.++
T Consensus 11 ~~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~l 90 (481)
T 3mq4_A 11 IRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTF 90 (481)
T ss_dssp EEECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGG
T ss_pred cccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHH
Confidence 34578999999999983 35778899999999999999999999999999999999999999999988
Q ss_pred Hh-----------------------cCceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCCh
Q 006736 94 LE-----------------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSD 149 (633)
Q Consensus 94 i~-----------------------~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~ 149 (633)
++ ++|.+|||+.+|..+.++++++..+++|+|+++++++.|++ .+||++||+.|++
T Consensus 91 l~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd 170 (481)
T 3mq4_A 91 VQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPD 170 (481)
T ss_dssp GGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCT
T ss_pred HhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCch
Confidence 76 46999999999999999999999999999999999999998 6799999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhh-cCcEEEEEeecCCCCChh--hHHHHHHHhh-cCCCeE
Q 006736 150 LYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRN--QIIDTLLTVS-SMMSRI 225 (633)
Q Consensus 150 ~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~--~~~~~l~~i~-~~~~~v 225 (633)
..++.+++++++++||++|++|++|++||....+.+++.+++ .|+||+..+.++...... ++..++.+++ .+++++
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~v 250 (481)
T 3mq4_A 171 SFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRA 250 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----C
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999998875 799999888876433333 7888999998 579999
Q ss_pred EEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCCccccccccccccceEEEeeecCCChHHHHHHHH-----
Q 006736 226 LILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTR----- 300 (633)
Q Consensus 226 Ivl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~----- 300 (633)
||+++...++..++++++++|+++ +++||+++.|....... .......+|.+++.++..+.+.+++|+..
T Consensus 251 Ii~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~ 325 (481)
T 3mq4_A 251 VVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLEN 325 (481)
T ss_dssp EEECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTT
T ss_pred EEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCc
Confidence 999999999999999999999864 48999999886533221 12246788999999998889988888643
Q ss_pred ----------HHHhhcc---------------CCCCCCCC------CCchhHHHhhHHHHHHHHHHHhhhcCCCcccccC
Q 006736 301 ----------WRHLTRR---------------NTLNGPIG------LNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSED 349 (633)
Q Consensus 301 ----------~~~~~~~---------------~~~~~~~~------~~~~~~~~yDav~~~~~Al~~~~~~~~~~~~~~~ 349 (633)
|+..|++ |++.+... .......+||||+++|+|||+++.+.+..
T Consensus 326 ~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~----- 400 (481)
T 3mq4_A 326 NRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD----- 400 (481)
T ss_dssp CTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC-----
Confidence 4444432 33322221 11345679999999999999997642211
Q ss_pred cccccccCCCcccccccccCchHHHHHHHHhcccccccc-ceEEccCCCCCCCcEEEEEeec---C--CeeEEeeec
Q 006736 350 SKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTG-PIKFTSDRDLINPAYEVINVIG---T--GSRRIGYWS 420 (633)
Q Consensus 350 ~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G-~v~Fd~~g~r~~~~~~I~~~~~---~--~~~~vg~w~ 420 (633)
....|.....+ ++++|.++|++++|.+.+| .|.||++|++ ...|+|+|++. + .+++||.|+
T Consensus 401 --------~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 --------YRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp -----------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred --------CCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 11245444345 4889999999999999999 6999999996 48999999972 2 568999997
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.5e-39 Score=338.21 Aligned_cols=357 Identities=16% Similarity=0.143 Sum_probs=299.7
Q ss_pred CCeEEEEEEeecCC--ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcCCc
Q 006736 30 PPVLNIGAVFALNS--TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQF 106 (633)
Q Consensus 30 ~~~i~IG~l~p~~~--~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~~~ 106 (633)
.++|+||+++|++. ..|.....|+++|+++||++||+++|++++++++|+++++..+.+.+++|+.+ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 46899999999985 34667899999999999999999855999999999999999999999999985 9999999999
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~ 185 (633)
+..+.++++++..++||+|++.++++.++. ..+|++||+.|++..++.++++++.+++|++|++|+.+++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999888887764 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 006736 186 GDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (633)
Q Consensus 186 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 263 (633)
++.+++. |++++....++ .+..++...++++++.++|+|++.+...++..++++++++|+... +++.+......
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~~~ 238 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPA--LYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGEP 238 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCC--TTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEESH
T ss_pred HHHHHHhCCCcEEEeeecCC--CCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCCCh
Confidence 9999998 89998877776 456789999999999999999999999999999999999998543 33333221111
Q ss_pred cCCCccccccccccccceEEEee-e-cCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcC
Q 006736 264 LDTDSQLHSEKMDDIQGVLTLRM-Y-TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (633)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~ 341 (633)
... ..-.....+|++.... + .++.+..++|.++|+++++ ..++.++..+|||++++++|++++..
T Consensus 239 ~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~Yda~~~~a~Al~~ag~-- 305 (387)
T 3i45_A 239 EYL----NPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK-------EDPFVGSLVGYNTLTAMAVAFEKAGG-- 305 (387)
T ss_dssp HHH----GGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHH----HHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC-------CCCCcHHHHHHHHHHHHHHHHHHhCC--
Confidence 000 0111234677766532 2 3578899999999999986 34578899999999999999999731
Q ss_pred CCcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEee-cCCeeEEeeec
Q 006736 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSRRIGYWS 420 (633)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~-~~~~~~vg~w~ 420 (633)
.++..+.++|++++|+|++|+++|++++++......|.+++ .++...++.|.
T Consensus 306 ---------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~ 358 (387)
T 3i45_A 306 ---------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWR 358 (387)
T ss_dssp ---------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeE
Confidence 14899999999999999999999998665567788888876 56779999998
Q ss_pred CCCCCcccCC
Q 006736 421 NHSGLSVVPP 430 (633)
Q Consensus 421 ~~~~l~~~~~ 430 (633)
...+....++
T Consensus 359 ~~~~~~~~p~ 368 (387)
T 3i45_A 359 YVDGGSVLPP 368 (387)
T ss_dssp EECGGGGSCC
T ss_pred EeCchhcCCC
Confidence 8777655544
No 17
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=5.2e-40 Score=336.46 Aligned_cols=335 Identities=15% Similarity=0.201 Sum_probs=257.5
Q ss_pred CCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhc-CceEEEc-CCc
Q 006736 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVH-DTNYSRFLGMVEALTLLEN-ETVAIIG-PQF 106 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~-D~~~~~~~a~~~~~~li~~-~v~aviG-~~~ 106 (633)
+..+.||++|..+.. +.+++-|++..|.-. +..++..+.. ...+||.++...+|+++.. +|.+||| +.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 457999999976642 888888999988543 1356666543 4667999999999999976 7988886 444
Q ss_pred hhhHHH--HHHhhccCCccEEeeccCCC-CCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhH
Q 006736 107 SVIAHL--VSHIANEFQVPLLSFAATDP-SLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (633)
Q Consensus 107 s~~~~~--va~~~~~~~iP~Is~~a~~~-~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~ 182 (633)
+..+.+ ++.++..+++|+|+++++++ .|++ .+||++||+.|++..++.++++++++|||++|++||+|+ . ..
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~---g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-P---GY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-T---TH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-c---cH
Confidence 444545 89999999999999999988 8988 579999999999999999999999999999999999874 3 34
Q ss_pred HHHHHHHhhc--C--cEEEEEeecCCCCChhhHHHHH-HHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 006736 183 AALGDKLAEK--R--CRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (633)
Q Consensus 183 ~~~~~~~~~~--g--~~v~~~~~~~~~~~~~~~~~~l-~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 257 (633)
+.+.+.+++. | +|+.....++...+..+++..+ +++++.++++||++++...+..++++|.++||++++|+||++
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t 229 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVP 229 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEEC
T ss_pred HHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Confidence 5555555554 4 4766655444333445677788 689999999999999999999999999999999999999999
Q ss_pred CccccccCCCccccccccccccceEEEeeecCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHh
Q 006736 258 DWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAF 337 (633)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~ 337 (633)
+.+....+... .+...|++++++.. |+ ..+.+++||||+++++|++++
T Consensus 230 ~~~~~~~~~~~------~~~~~g~~~~~~~~------------W~--------------~~~~~~~yDaV~~~A~A~~~~ 277 (364)
T 3qel_B 230 SLVAGDTDTVP------SEFPTGLISVSYDE------------WD--------------YGLPARVRDGIAIITTAASDM 277 (364)
T ss_dssp HHHHCSTTCCC------TTSCTTCEECCBCT------------TT--------------SCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccc------ccCCCceEEEeecc------------ch--------------hhHHHHHHHHHHHHHHHHHHH
Confidence 87543332211 23557888877643 21 134678999999999999998
Q ss_pred hhcCCCcccccCcccccccCCCccccccc--ccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEee-cCCee
Q 006736 338 FDQGGNISFSEDSKLSELSRGDMRFSSVS--IFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSR 414 (633)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~-~~~~~ 414 (633)
.++.... .....+|.... .|.+|..|.++|++++|+|+ ++.||++|+|.++.|+|+|++ +.+++
T Consensus 278 ~~~~~~i-----------~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~ 344 (364)
T 3qel_B 278 LSEHSFI-----------PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWE 344 (364)
T ss_dssp HTTTSCC-----------CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEE
T ss_pred HhccCCC-----------CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcE
Confidence 7654322 22344676543 57889999999999999998 999999999999999999998 57899
Q ss_pred EEeeecC
Q 006736 415 RIGYWSN 421 (633)
Q Consensus 415 ~vg~w~~ 421 (633)
+||+|++
T Consensus 345 ~VG~W~~ 351 (364)
T 3qel_B 345 RVGKWKD 351 (364)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 9999984
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1e-39 Score=343.28 Aligned_cols=345 Identities=14% Similarity=0.066 Sum_probs=281.5
Q ss_pred CCCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHh-cCceEEEc
Q 006736 29 IPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLE-NETVAIIG 103 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~-~~~~~a~~~~~~li~-~~v~aviG 103 (633)
..++|+||+++|++. ..|.....|+++|+++||++||++ |++|+++++|++ +++..++..+++|+. ++|.+|||
T Consensus 11 ~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG 89 (419)
T 3h5l_A 11 SSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIA 89 (419)
T ss_dssp --CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEC
T ss_pred cCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEc
Confidence 457899999999985 347888999999999999999996 899999999987 699999999999999 69999999
Q ss_pred CCchhhHHHHHHhhccCCccEEeeccCCCCCc-----c-CCCCceEEecCChHHHHHHHHHHHHHc--------CCcEEE
Q 006736 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLS-----S-LQYPFFVRTTQSDLYQMAAIADIVDYF--------GWRNVI 169 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls-----~-~~~~~~~r~~p~~~~~~~al~~ll~~~--------~w~~v~ 169 (633)
|.+|..+.++++++..++||+|+++ +.+.+. + ..|+++||+.|++..++.+++++++++ +|++|+
T Consensus 90 ~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 168 (419)
T 3h5l_A 90 GYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIA 168 (419)
T ss_dssp SCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEE
T ss_pred cccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEE
Confidence 9999999999999999999999964 333222 2 468999999999999999999999876 899999
Q ss_pred EEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHHHHHHcCCC
Q 006736 170 ALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 170 ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a~~~g~~ 248 (633)
+|+.+++||....+.+++.+++.|++++..+.++ .+..|+..++++|++.++|+|++.+. +.++..++++++++|+.
T Consensus 169 il~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~ 246 (419)
T 3h5l_A 169 IITGPGIYSVNIANAIRDGAGEYGYDVSLFETVA--IPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPTN 246 (419)
T ss_dssp EEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECC--SSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCCS
T ss_pred EEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999888887 45689999999999999999999865 57899999999999983
Q ss_pred CCCeEEEEeCccccccCCCccccccccccccceEEEeee-cCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHH
Q 006736 249 ESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMY-TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTL 327 (633)
Q Consensus 249 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav 327 (633)
..|++++++.... .. ....+..+|++....+ .+..+..++|.++|+++|+. ...+.++..+|||+
T Consensus 247 ---~~~~~~~~~~~~~-~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~------~p~~~~a~~~Yda~ 312 (419)
T 3h5l_A 247 ---SLVYLQYGASLAA-FR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD------LSSTASGCQTYSAL 312 (419)
T ss_dssp ---CEEEECSGGGSHH-HH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT------TSCHHHHHHHHHHH
T ss_pred ---ceEEecCCCCcHH-HH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC------CCCcchhHHHHHHH
Confidence 4577776554221 10 1223456787766543 34678899999999999962 12235899999999
Q ss_pred HHHHHHHHHhhhcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCC--------
Q 006736 328 WLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLI-------- 399 (633)
Q Consensus 328 ~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~-------- 399 (633)
+++++|++++..... .+.+.++..++++|++++|+|++|.++||++|++.
T Consensus 313 ~~~~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~ 370 (419)
T 3h5l_A 313 YAYSIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETN 370 (419)
T ss_dssp HHHHHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCS
T ss_pred HHHHHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccC
Confidence 999999998643211 11122588999999999999999999999999843
Q ss_pred ----CCcEEEEEeecCCe
Q 006736 400 ----NPAYEVINVIGTGS 413 (633)
Q Consensus 400 ----~~~~~I~~~~~~~~ 413 (633)
...+.|+|++++.+
T Consensus 371 ~~~~~~~~~i~q~q~g~~ 388 (419)
T 3h5l_A 371 DPSLGMPHIFSQIFDKAE 388 (419)
T ss_dssp CTTSSEECEEEECCCTTS
T ss_pred CccccCCceEEEeeCCce
Confidence 22345677776666
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=5e-39 Score=331.97 Aligned_cols=336 Identities=16% Similarity=0.169 Sum_probs=285.8
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhc-CceEEEcC
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLEN-ETVAIIGP 104 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~-~v~aviG~ 104 (633)
.++||||+++|++. ..|.....|+++|++++| +++ .|++|+++++|+.+ +|..++..+.+|+.+ +|.+||||
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 57899999999983 457888999999999998 666 59999999999976 899999999999976 99999999
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHH
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAA 184 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~ 184 (633)
.+|..+.++++++..+++|+|++.++++.++.. .||+||+.|++..++.++++++++.+|+++++|+.|++||....+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999998888888654 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 263 (633)
+++.+++.|++++....++ .+.+|++.++.++++.++|+|++... ......+++++++.|+....+.++........
T Consensus 159 ~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMP--LSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTE 236 (371)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCG
T ss_pred HHHHHHhcCCceEEEEecC--cccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCH
Confidence 9999999999999999888 56789999999999999999988764 57888899999999998766677766543322
Q ss_pred cCCCccccccccccccceEEEeeecC--CChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcC
Q 006736 264 LDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (633)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~ 341 (633)
... ........|++...++.+ +++..++|.++|+++++. ...++.++..+||+++++++|+++..
T Consensus 237 ~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~-----~~~~~~~a~~~Yda~~~l~~Ai~~~a--- 303 (371)
T 4f06_A 237 PDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAK-----LDEVTMTSVAAYDGARLIYKMIEATS--- 303 (371)
T ss_dssp GGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCC-----GGGCCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCC-----CCCccchHHHHHHHHHHHHHHHHHhc---
Confidence 111 223356678877776554 468899999999998862 23467789999999999999998631
Q ss_pred CCcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEee
Q 006736 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI 409 (633)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~ 409 (633)
++ . +++.++++|++++|+|++|+++||++++.....+.|.+++
T Consensus 304 g~------------------------~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 304 GK------------------------S-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp TS------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred CC------------------------C-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 11 1 4889999999999999999999998887666677788876
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=3.8e-39 Score=331.45 Aligned_cols=345 Identities=16% Similarity=0.109 Sum_probs=295.3
Q ss_pred CeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 31 PVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 31 ~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
++|+||+++|++. ..|.....|+++|++++|++||+ +|+++++++.|+++++..+.+.+++++.++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 4799999999984 35778899999999999999998 6999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH-HHcCCcEEEEEEecCCCcchhHHHHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll-~~~~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
..+.++++++..+++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++.+|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999888888887778999999999999999999965 55699999999999999999999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 266 (633)
+.+++.|+++.....++ .+..++...++++++.++++|++++....+..+++++++.|+..+ |++++++......
T Consensus 160 ~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNELA 234 (356)
T ss_dssp HHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHHHH
T ss_pred HHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHHHH
Confidence 99999999987777776 456788899999999999999999999999999999999998754 7776654321110
Q ss_pred CccccccccccccceEEEeeecC-CChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCcc
Q 006736 267 DSQLHSEKMDDIQGVLTLRMYTQ-SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (633)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~ 345 (633)
.......+|++....+.+ ..+..++|.++|+++ + ..++.++..+||+++++++|++++..
T Consensus 235 -----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~-------~~p~~~~~~~yda~~~~~~al~~ag~------ 295 (356)
T 3ipc_A 235 -----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G-------FNPEAYTLYSYAAMQAIAGAAKAAGS------ 295 (356)
T ss_dssp -----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T-------CCCCTTHHHHHHHHHHHHHHHHHHTC------
T ss_pred -----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C-------CCcchhHHHHHHHHHHHHHHHHHhCC------
Confidence 122345778777766554 467889999999987 4 34567899999999999999998632
Q ss_pred cccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeec---CCeeEEeeecCC
Q 006736 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIG---TGSRRIGYWSNH 422 (633)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~---~~~~~vg~w~~~ 422 (633)
.++..+.++|++.+|+|++|+++||++|++....+.|+++++ +.|+.+..|...
T Consensus 296 -----------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -----------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -----------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -----------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 148999999999999999999999999999888999999995 899999999764
Q ss_pred C
Q 006736 423 S 423 (633)
Q Consensus 423 ~ 423 (633)
.
T Consensus 353 ~ 353 (356)
T 3ipc_A 353 H 353 (356)
T ss_dssp -
T ss_pred c
Confidence 3
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-38 Score=326.87 Aligned_cols=342 Identities=18% Similarity=0.204 Sum_probs=293.1
Q ss_pred CCCCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEc
Q 006736 28 TIPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIG 103 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG 103 (633)
..+.+++||+++|+++ ..|.....|+++|++++|+ + .|+++++++.|+++++..+.+.+++++.+ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 3466899999999994 4577889999999999999 5 58999999999999999999999999988 5999999
Q ss_pred CCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH-HHcCCcEEEEEEe-cCCCcchh
Q 006736 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYV-DDDHGRNG 181 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll-~~~~w~~v~ii~~-d~~~g~~~ 181 (633)
+.++..+.++++++..+++|+|++.++++.++. .+|++||+.|++..++.++++++ +++||+++++||. +++|+...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999888777754 56999999999999999999998 5679999999986 67899999
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccc
Q 006736 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS 261 (633)
Q Consensus 182 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 261 (633)
.+.+++.+++.|+++.... ++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ |++.+.+.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~ 240 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FR--SGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGY---ILAGDGAD 240 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC--TTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCSE---EEECGGGC
T ss_pred HHHHHHHHHHCCCEEEEEE-eC--CCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCce---EEeeCCcC
Confidence 9999999999999998877 76 356788999999999999999999999999999999999998653 77766543
Q ss_pred cccCCCccccccccccccceEEEeeecCC---ChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhh
Q 006736 262 SILDTDSQLHSEKMDDIQGVLTLRMYTQS---SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (633)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~ 338 (633)
... . ........+|++....+.|. .+..++|.++|+++|+ ..++.++..+||+++++++|++++.
T Consensus 241 ~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~yda~~~~~~al~~ag 308 (366)
T 3td9_A 241 APE-L----IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG-------KEPAALNALGYDAYMVLLDAIERAG 308 (366)
T ss_dssp STH-H----HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHH-H----HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC-------CCCchhHHHHHHHHHHHHHHHHHhC
Confidence 211 1 02233567888888766554 6789999999999987 3467899999999999999999973
Q ss_pred hcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhcc-ccccccceEEccCCCCCCCcEEEEEeecCCeeEEe
Q 006736 339 DQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN-MTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIG 417 (633)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~-f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg 417 (633)
. .++..+.++|++++ |+|++|+++||++|++. ..+.|++++++.++.|+
T Consensus 309 ~-----------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~ 358 (366)
T 3td9_A 309 S-----------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEA 358 (366)
T ss_dssp S-----------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEE
T ss_pred C-----------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEE
Confidence 2 14899999999998 99999999999999976 45999999999999999
Q ss_pred eecCC
Q 006736 418 YWSNH 422 (633)
Q Consensus 418 ~w~~~ 422 (633)
.|++.
T Consensus 359 ~~~~~ 363 (366)
T 3td9_A 359 VINPD 363 (366)
T ss_dssp EECGG
T ss_pred ecChh
Confidence 99764
No 22
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=6.5e-38 Score=322.48 Aligned_cols=345 Identities=16% Similarity=0.145 Sum_probs=293.9
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH-hcCceEEEcCC
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLL-ENETVAIIGPQ 105 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li-~~~v~aviG~~ 105 (633)
.++|+||+++|++. ..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+++ .++|.+|||+.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 36899999999974 357788999999999999999996 99999999999999999999999999 67999999999
Q ss_pred chhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHH
Q 006736 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (633)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~ 185 (633)
++..+.++++++...++|+|++.++++.++... |++||+.|++..++.++++++.+.||++|++|+.++.++....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999988887776644 9999999999999999999988889999999999999999999999
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 265 (633)
++.+++.|+++.....++ .+..++...++++++.++++|++.++...+..+++++++.|+..+ |++.+.+.....
T Consensus 160 ~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~~~ 234 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVP--PGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSPKF 234 (358)
T ss_dssp HHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSHHH
T ss_pred HHHHHHcCCEEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCHHH
Confidence 999999999998777676 355688889999998899999999999999999999999998655 777765432211
Q ss_pred CCccccccccccccceEEEeeecC--CChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCC
Q 006736 266 TDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (633)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~ 343 (633)
. .......+|++...++.+ ..+..++|.++|+++++ ..++.++..+|||++++++|++++...
T Consensus 235 ~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~ag~~--- 299 (358)
T 3hut_A 235 I-----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG-------AIPTLFAAHGYDAVGIMLAAVGRAGPE--- 299 (358)
T ss_dssp H-----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred H-----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 0 122356788888877655 46889999999999987 356789999999999999999996321
Q ss_pred cccccCcccccccCCCcccccccccCchHH-HHHHHHhc-cccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeecC
Q 006736 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKM-LLDNILQV-NMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSN 421 (633)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-l~~~l~~~-~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~~ 421 (633)
++.. +.++|+++ +|+|++|+++|+++|++....+.|++++++.|+.+..+.+
T Consensus 300 --------------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 300 --------------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp --------------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred --------------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 3677 99999999 8999999999999999756788999999998988876654
Q ss_pred C
Q 006736 422 H 422 (633)
Q Consensus 422 ~ 422 (633)
.
T Consensus 354 ~ 354 (358)
T 3hut_A 354 H 354 (358)
T ss_dssp -
T ss_pred c
Confidence 3
No 23
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.2e-37 Score=319.67 Aligned_cols=338 Identities=16% Similarity=0.208 Sum_probs=277.9
Q ss_pred CCCCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEc
Q 006736 28 TIPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIG 103 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG 103 (633)
..+++||||+++|+|. ..|.....|+++|+++||++||++ |++|+++++|+++++..+++++.+|+.+ ++.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 4567999999999983 457889999999999999999995 9999999999999999999999999987 7899999
Q ss_pred CCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc-CCcEEEEEEec-CCCcchh
Q 006736 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-GWRNVIALYVD-DDHGRNG 181 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~-~w~~v~ii~~d-~~~g~~~ 181 (633)
+.+|..+.++++++..+++|+|++.++++.++. .++|+||+.|++..++.++++++.+. +++++++++.+ ++||...
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999988888865 45899999999999999999998665 45566655554 4577776
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccc
Q 006736 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS 261 (633)
Q Consensus 182 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 261 (633)
.+.+++ +.|.+++....++ .+..|++.++.++++.++|+|++.+...++..++++++++|+..+ +++.+++.
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~ 232 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFV--AGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGFN 232 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEEC--TTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGGC
T ss_pred HHHHHH---HcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecccc
Confidence 666643 4588998888888 566799999999999999999999999999999999999998765 66665443
Q ss_pred cccCCCccccccccccccceEEEeeecC---CChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhh
Q 006736 262 SILDTDSQLHSEKMDDIQGVLTLRMYTQ---SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (633)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~ 338 (633)
..... .....+...|.+....+.+ ..+..++|.++|+++|+ ..++.++.++||+++++++|+++..
T Consensus 233 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~la~Ai~~a~ 301 (353)
T 4gnr_A 233 GEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN-------EEPSTFAALAYDSVHLVANAAKGAK 301 (353)
T ss_dssp SHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC-------CCCChhHHHHHHHHHHHHHHHhcCC
Confidence 22111 0112245667776665433 46788999999999997 4567899999999999999997531
Q ss_pred hcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhc-cccccccceEEccCCCCCCCcEEEEEeecCCeeEEe
Q 006736 339 DQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIG 417 (633)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg 417 (633)
++..+.++|+++ .|+|++|+++||++|++. ..+.|++++++.++.+.
T Consensus 302 -------------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~ 349 (353)
T 4gnr_A 302 -------------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAE 349 (353)
T ss_dssp -------------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEE
T ss_pred -------------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEE
Confidence 377899999988 599999999999999875 56789999988887665
Q ss_pred e
Q 006736 418 Y 418 (633)
Q Consensus 418 ~ 418 (633)
.
T Consensus 350 ~ 350 (353)
T 4gnr_A 350 V 350 (353)
T ss_dssp E
T ss_pred E
Confidence 4
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1e-37 Score=319.41 Aligned_cols=339 Identities=15% Similarity=0.145 Sum_probs=286.5
Q ss_pred CeEEEEEEeecCCc---cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 31 PVLNIGAVFALNST---IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 31 ~~i~IG~l~p~~~~---~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
++|+||+++|++.. +|.....|+++|+++||++||+ +|+++++++.|+++++..+.+.+.++++++|.+|||+.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 37999999999743 4677899999999999999998 6999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH-HHcCCcEEEEEEecCCCcchhHHHHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DYFGWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll-~~~~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
..+.++.+++...++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||+++++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 88888899999999999998887777766457999999999999999999997 45799999999998889988999999
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 266 (633)
+.+++.|+++.....++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ |++++.+... ..
T Consensus 160 ~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 233 (346)
T 1usg_A 160 DGLKAANANVVFFDGIT--AGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA-SL 233 (346)
T ss_dssp HHHHHTTCCEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-TH
T ss_pred HHHHHcCCEEEEEeccC--CCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-HH
Confidence 99999999998766665 344577888999998899999999988889999999999998654 8887655321 11
Q ss_pred CccccccccccccceEEEeeec-CCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCcc
Q 006736 267 DSQLHSEKMDDIQGVLTLRMYT-QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (633)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~ 345 (633)
. .......+|++...++. ++.+..++|.++|+++++ ..++.++..+|||++++++|++++..
T Consensus 234 ~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~~~~~~~~~yda~~~~~~al~~~g~------ 296 (346)
T 1usg_A 234 S----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK-------DPSGPYVWITYAAVQSLATALERTGS------ 296 (346)
T ss_dssp H----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC-------CCCCHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred H----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHHHHHHHHhCC------
Confidence 0 11224567888776543 356778999999998875 34567899999999999999998631
Q ss_pred cccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEee-cCCeeEE
Q 006736 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVI-GTGSRRI 416 (633)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~-~~~~~~v 416 (633)
. ++..+.++|++.+|+|++|+++|+++|++....|.|++++ ++.++.+
T Consensus 297 ----------------------~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 ----------------------D-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp ----------------------C-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred ----------------------C-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 1 4889999999999999999999999999877789999998 7777654
No 25
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=2.3e-37 Score=320.40 Aligned_cols=334 Identities=15% Similarity=0.143 Sum_probs=287.1
Q ss_pred CCeEEEEEEeecCCc---c-chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCceEEEcC
Q 006736 30 PPVLNIGAVFALNST---I-GKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGP 104 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~---~-g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aviG~ 104 (633)
.++|+||+++|++.. . |.....|+++|++++ ++|+ .|++++++++|+++++..+.+.+++|+. ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 468999999999833 3 778999999999999 4666 5899999999999999999999999998 699999999
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHH
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~ 183 (633)
.++..+.++++++..+++|+|++.++++.++. ..+|++||+.|++..++.++++++.+++|++|++|+.++.+|....+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888888876 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 263 (633)
.+++.+++.|++++....++ .+..++...++++++.++|+|++.+...++..++++++++|+..+. .+++.+.+...
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~ 235 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHP--LSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFIND 235 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHH
T ss_pred HHHHHHHHcCCEEeeeeeCC--CCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhh
Confidence 99999999999998887777 4567899999999999999999999999999999999999998765 44544433221
Q ss_pred cCCCccccccccccccceEEEeeecCC-ChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCC
Q 006736 264 LDTDSQLHSEKMDDIQGVLTLRMYTQS-SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (633)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~ 342 (633)
.. ....+..+|++...++.++ .+..++|.++|+++|+ ..++.++..+|||++++++|++++..
T Consensus 236 ~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~a~~~Yda~~~~~~Al~~ag~--- 299 (375)
T 3i09_A 236 VH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK-------KMPSSLQAADYSSVTTYLKAVQAAGS--- 299 (375)
T ss_dssp HH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred Hh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhCC---
Confidence 10 1112456788777665543 6789999999999996 45678899999999999999999732
Q ss_pred CcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCC
Q 006736 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTG 412 (633)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~ 412 (633)
.++..+.++|++++|+|++|.+.|+++|++. ..+.|.+++++.
T Consensus 300 --------------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 --------------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp --------------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred --------------------------CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 1489999999999999999999999999876 578899988654
No 26
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=4.5e-38 Score=327.77 Aligned_cols=355 Identities=11% Similarity=0.011 Sum_probs=294.8
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcCC
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQ 105 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~~ 105 (633)
.++|+||+++|++. ..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++++.+ +|.+||| .
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~ 82 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-Y 82 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-C
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-C
Confidence 57899999999984 456788999999999999999996 8999999999999999999999999997 9999999 6
Q ss_pred chhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHH-cCCcEEEEEEecCCCcchhHH
Q 006736 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYVDDDHGRNGIA 183 (633)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~-~~w~~v~ii~~d~~~g~~~~~ 183 (633)
++..+.++++++...+||+|++.++.+ +.+ ..+|++||+.|++..++.++++++.+ +||++|++|+.+++||....+
T Consensus 83 ~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~ 161 (392)
T 3lkb_A 83 ATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVE 161 (392)
T ss_dssp CHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHH
T ss_pred CcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHH
Confidence 888888899999999999999765443 444 56799999999999999999998866 699999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 263 (633)
.+++.+++.|++++....++ .+..++...++++++.++|+|++.+....+..++++++++|+..+ |++++++...
T Consensus 162 ~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~ 236 (392)
T 3lkb_A 162 DARKAARELGLQIVDVQEVG--SGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYTGGP 236 (392)
T ss_dssp HHHHHHHHHTCEEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCSH
T ss_pred HHHHHHHHcCCeEEEEEeeC--CCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCcccH
Confidence 99999999999998887777 456788999999999999999999999999999999999998653 7776543321
Q ss_pred cCCCccccccccccccceEEEeeecC--CChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcC
Q 006736 264 LDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQG 341 (633)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~ 341 (633)
... .......+|++....+.+ ..+..++|.++|+++|+..+. ...+.++..+||+++++++|++++...+
T Consensus 237 -~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~---~~~~~~~~~~yda~~~~~~al~~ag~~~ 308 (392)
T 3lkb_A 237 -DLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPEN---FIESVNYTNGMLAAAIAVEAIRRAQERF 308 (392)
T ss_dssp -HHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCHH---HHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCcc---cccchhHHHHHHHHHHHHHHHHHhhccC
Confidence 110 122345788888776543 245688999999999862100 0012347899999999999999986422
Q ss_pred CCcccccCcccccccCCCcccccccccCchHHHHHHHHhcc----cc-------ccccceEEccCCCCCCCcEEEEEeec
Q 006736 342 GNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVN----MT-------GVTGPIKFTSDRDLINPAYEVINVIG 410 (633)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~----f~-------g~~G~v~Fd~~g~r~~~~~~I~~~~~ 410 (633)
+ +.++..+.++|++++ |+ |++|+++|+++|++....+.|.++++
T Consensus 309 ~-------------------------~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~ 363 (392)
T 3lkb_A 309 K-------------------------RITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKG 363 (392)
T ss_dssp S-------------------------SCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEET
T ss_pred C-------------------------CCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeC
Confidence 1 114899999999997 98 99999999999887677899999999
Q ss_pred CCeeEEeeecCCCCC
Q 006736 411 TGSRRIGYWSNHSGL 425 (633)
Q Consensus 411 ~~~~~vg~w~~~~~l 425 (633)
+.++.|+.|....++
T Consensus 364 g~~~~v~~w~~~~~~ 378 (392)
T 3lkb_A 364 GRFVPVTEPFTSALF 378 (392)
T ss_dssp TEEEECSCCBCCHHH
T ss_pred CEEEEeccccchhHH
Confidence 999999999876543
No 27
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=5e-37 Score=318.01 Aligned_cols=345 Identities=14% Similarity=0.180 Sum_probs=294.3
Q ss_pred CCCCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEc
Q 006736 28 TIPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIG 103 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG 103 (633)
+..++|+||+++|++. ..|.....|+++|++++| +++ +|+++++++.|+++++..+.+.+.+++.+ +|.+|||
T Consensus 12 a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 12 AQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp ---CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred hhCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 3457899999999974 456788999999999998 554 79999999999999999999999999986 9999999
Q ss_pred CCchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhH
Q 006736 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~ 182 (633)
+.++..+.++++++..+++|+|++.++++.+++ ..+|++||+.|++..++.++++++.++||++|++|+.++.+|....
T Consensus 89 ~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 168 (375)
T 4evq_A 89 TVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMV 168 (375)
T ss_dssp CSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHH
Confidence 999999999999999999999999888887776 3489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCcccc
Q 006736 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262 (633)
Q Consensus 183 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 262 (633)
+.+++.+++.|+++.....++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ |++++ +..
T Consensus 169 ~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~~~ 242 (375)
T 4evq_A 169 SGFKKSFTAGKGEVVKDITIA--FPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-FLT 242 (375)
T ss_dssp HHHHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-GGT
T ss_pred HHHHHHHHHcCCeEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-cCC
Confidence 999999999999998777776 345688899999998899999998999999999999999998754 66654 321
Q ss_pred ccCCCccccccccccccceEEEeeecC--CChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhc
Q 006736 263 ILDTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQ 340 (633)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~ 340 (633)
. ... .......+|++...++.+ +.+..++|.++|+++|+ ..++.++..+||+++++++|++++...
T Consensus 243 ~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~~p~~~~~~~yda~~~~~~al~~~g~~ 310 (375)
T 4evq_A 243 D-GVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK-------IPPDVFAVQGWDAGQLLDAGVKAVGGD 310 (375)
T ss_dssp T-TTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred H-HHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC-------CCCcHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 111 122356788888876654 46889999999999987 356788999999999999999986321
Q ss_pred CCCcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEeeec
Q 006736 341 GGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWS 420 (633)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~w~ 420 (633)
+.++..+.++|++++|+|++|+++|+++|++. ..+.|.+++++.++.|+.+-
T Consensus 311 ---------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~ 362 (375)
T 4evq_A 311 ---------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAA 362 (375)
T ss_dssp ---------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEE
T ss_pred ---------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehh
Confidence 12489999999999999999999999999875 68999999999999999875
Q ss_pred C
Q 006736 421 N 421 (633)
Q Consensus 421 ~ 421 (633)
+
T Consensus 363 ~ 363 (375)
T 4evq_A 363 P 363 (375)
T ss_dssp C
T ss_pred h
Confidence 4
No 28
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=3.8e-37 Score=319.23 Aligned_cols=336 Identities=12% Similarity=0.088 Sum_probs=285.1
Q ss_pred CCeEEEEEEeecCC---cc-chhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCceEEEcC
Q 006736 30 PPVLNIGAVFALNS---TI-GKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGP 104 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~-g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aviG~ 104 (633)
.++|+||+++|++. .. |.....|+++|++++ +||+ .|++++++++|+++++..+.+.+++++. ++|.+||||
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 80 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDV 80 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 46899999999983 34 778999999999999 4666 5899999999999999999999999998 699999999
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHH
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~ 183 (633)
.++..+.++++++..+++|+|++.++++.++. ..+|++||+.|++..++.++++++.++||+++++|+.++.+|....+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 160 (379)
T 3n0w_A 81 VNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNA 160 (379)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHH
Confidence 99999999999999999999999888888876 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 263 (633)
.+++.+++.|++++....++ .+..++...++++++.++|+|++.+...++..++++++++|+..+.+ ++.+..+...
T Consensus 161 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 237 (379)
T 3n0w_A 161 AIRRELTAGGGQIVGSVRFP--FETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMIDILT 237 (379)
T ss_dssp HHHHHHHHHTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBCCHH
T ss_pred HHHHHHHHcCCEEEEEEeCC--CCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEecccchH
Confidence 99999999999999887777 35678999999999999999999999999999999999999976543 4444332211
Q ss_pred cCCCccccccccccccceEEEeeecCC-ChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCC
Q 006736 264 LDTDSQLHSEKMDDIQGVLTLRMYTQS-SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (633)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~ 342 (633)
+.. ....+..+|++...++.++ .+..++|.++|+++|+ ..++.++..+||+++++++|++++..
T Consensus 238 -~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g-------~~p~~~~~~~Yda~~~~~~Al~~ag~--- 302 (379)
T 3n0w_A 238 -DVK----SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG-------KMPTNNQAGGYSAALQYLKAVNAIGS--- 302 (379)
T ss_dssp -HHH----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred -HHH----hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC-------CCCChHHHHHHHHHHHHHHHHHHhCC---
Confidence 110 1112457788777665543 6789999999999996 35678999999999999999999732
Q ss_pred CcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccc-eEEccCCCCCCCcEEEEEeecCCe
Q 006736 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGP-IKFTSDRDLINPAYEVINVIGTGS 413 (633)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~-v~Fd~~g~r~~~~~~I~~~~~~~~ 413 (633)
.++..+.++|++++|+|+.|. +.|+++|++. ..+.|++++++..
T Consensus 303 --------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~~ 347 (379)
T 3n0w_A 303 --------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPED 347 (379)
T ss_dssp --------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGGG
T ss_pred --------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchhh
Confidence 148999999999999999886 9999999865 6788999886543
No 29
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=5.9e-37 Score=319.08 Aligned_cols=351 Identities=14% Similarity=0.106 Sum_probs=289.8
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCC-CCc--EEEEEEecCCCChHHHHHHHHHHH-hcCceEEE
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAIL-GGT--KLKLTVHDTNYSRFLGMVEALTLL-ENETVAII 102 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il-~g~--~l~~~~~D~~~~~~~a~~~~~~li-~~~v~avi 102 (633)
.++|+||+++|++. ..|.....|+++|+++||++||++ +|+ ++++++.|+++++..+.+.+.+++ .++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 35899999999984 456788999999999999999985 699 999999999999999999999999 66999999
Q ss_pred cCCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHH-cCCcEEEEEEe-cCCCcch
Q 006736 103 GPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWRNVIALYV-DDDHGRN 180 (633)
Q Consensus 103 G~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~-~~w~~v~ii~~-d~~~g~~ 180 (633)
| .++..+.++++++..+++|+|++.+..+ +. .+|++||+.|++..++.++++++.+ +||++|++|+. +++||..
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888899999999999999999766544 33 5799999999999999999999866 69999999999 8999999
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH--hhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT--VSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~--i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
..+.+++.+++.|++++....++ .+..++...+.+ +++.++++|++.++...+..++++++++|+..+ +++.+
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 232 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLP--LRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLTNV 232 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECC--TTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEECG
T ss_pred HHHHHHHHHHHcCCceeeeeccC--CCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEEec
Confidence 99999999999999999888887 456789999999 999999999999999999999999999998654 56554
Q ss_pred ccccccCCCccccccccccccc-eEEEeeec-----CCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHH
Q 006736 259 WLSSILDTDSQLHSEKMDDIQG-VLTLRMYT-----QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAH 332 (633)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~ 332 (633)
+.... ... .......+| ++...++. ++.+. .+|.++|+++|+.. ....+.++..+||+++++++
T Consensus 233 ~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~----~p~~~~~~~~~yda~~~l~~ 302 (391)
T 3eaf_A 233 WGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVS----EDQINLRVVQGFVNVWLLIK 302 (391)
T ss_dssp GGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCC----GGGCCHHHHHHHHHHHHHHH
T ss_pred cCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCC----CcccccHHHHHHHHHHHHHH
Confidence 32211 110 122355788 77766554 23444 68999999988610 01134789999999999999
Q ss_pred HHHHhhhcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhcccc--cccc-ceEEccCCCCCCCcEEEEEe-
Q 006736 333 AIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMT--GVTG-PIKFTSDRDLINPAYEVINV- 408 (633)
Q Consensus 333 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~--g~~G-~v~Fd~~g~r~~~~~~I~~~- 408 (633)
|++++.+.+. ...++..+.++|++..|+ |++| +++|++++++....+.|.++
T Consensus 303 Al~~a~~~g~------------------------~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~ 358 (391)
T 3eaf_A 303 AIESVTSQDL------------------------QERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLG 358 (391)
T ss_dssp HHTTSCHHHH------------------------HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEEC
T ss_pred HHHHHHhcCC------------------------CCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEe
Confidence 9998622110 001488999999998898 9999 99999877667788999999
Q ss_pred ecCCeeEEeeecCCC
Q 006736 409 IGTGSRRIGYWSNHS 423 (633)
Q Consensus 409 ~~~~~~~vg~w~~~~ 423 (633)
+++.++.++.|....
T Consensus 359 ~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 359 ENGELQLMGKFEAPS 373 (391)
T ss_dssp TTSSEEEEEEECCCT
T ss_pred cCCEEEEeeeecCcc
Confidence 889999999997543
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.5e-36 Score=313.61 Aligned_cols=346 Identities=16% Similarity=0.183 Sum_probs=290.6
Q ss_pred CCCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCceEEEcC
Q 006736 29 IPPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGP 104 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aviG~ 104 (633)
+.++|+||+++|++. ..|.....|+++|++++|. ++ +|+++++++.|+++++..+.+.+.+++. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 357899999999984 3467889999999999974 34 6999999999999999999999999998 699999999
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHH
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAA 184 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~ 184 (633)
.++..+.++++++..+++|+|++.++++.+++. +|++||+.|++..++.++++++.++||+++++|+.++.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998887777665 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCcccccc
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 264 (633)
+++.+++.|+++.....++ .+..++...++++++.++++|++.+....+..+++++++.|+..+++.|++++++....
T Consensus 159 ~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVP--LANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp HHHHHHHTTCEEEEEEEEC--SSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHH
T ss_pred HHHHHHHcCCEEEEEEeCC--CCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHH
Confidence 9999999999998887776 35578899999999999999999888889999999999999986657788887433211
Q ss_pred CCCccccccccccccceEEEeeecC--CChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCC
Q 006736 265 DTDSQLHSEKMDDIQGVLTLRMYTQ--SSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (633)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~ 342 (633)
.. .......+|++...++.+ ..+..++|.++| ++|+. ..++.++..+|||++++++|++++..+
T Consensus 237 ~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~------~~p~~~~~~~yda~~~~~~al~~~g~~-- 302 (368)
T 4eyg_A 237 LL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG------QRPGFMAVGGYDGIHLVFEALKKTGGK-- 302 (368)
T ss_dssp HH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS------SCCCHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC------CCCChHHHHHHHHHHHHHHHHHHhCCC--
Confidence 11 112245678887776654 468899999999 88831 356789999999999999999986311
Q ss_pred CcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEc-cCCCCCCCcEEEEEee--cCCee--EEe
Q 006736 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFT-SDRDLINPAYEVINVI--GTGSR--RIG 417 (633)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd-~~g~r~~~~~~I~~~~--~~~~~--~vg 417 (633)
. ++..+.++|++++|+|++|+++|| ++|++ ...+.|.+++ ++.++ .++
T Consensus 303 -------------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~ 355 (368)
T 4eyg_A 303 -------------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFA 355 (368)
T ss_dssp -------------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEE
T ss_pred -------------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEee
Confidence 1 488999999999999999999999 67764 5678898888 67664 455
Q ss_pred eecC
Q 006736 418 YWSN 421 (633)
Q Consensus 418 ~w~~ 421 (633)
.|..
T Consensus 356 ~~~~ 359 (368)
T 4eyg_A 356 KFDA 359 (368)
T ss_dssp EEEE
T ss_pred cccc
Confidence 5543
No 31
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=1e-36 Score=314.25 Aligned_cols=338 Identities=12% Similarity=0.080 Sum_probs=286.6
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcCC
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQ 105 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~~ 105 (633)
+++|+||+++|++. ..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+++++.+ +|.+|||+.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 46899999999973 456778999999999999999985 8999999999999999999999999996 999999999
Q ss_pred chhhHHHHHH--hhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHH
Q 006736 106 FSVIAHLVSH--IANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (633)
Q Consensus 106 ~s~~~~~va~--~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~ 183 (633)
++..+.++++ ++...++|+|++.++.+.+++ +|++||+.|++..++.++++++.++||++|++|+.++++|....+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999998888777765 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccc
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSI 263 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 263 (633)
.+++.+++.|+++.....++ .+..++...++++++.++++|++++....+..++++++++|+..+ |++.+.+...
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~ 234 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYP--RNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPG 234 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEEC--TTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHH
T ss_pred HHHHHHHHcCCcEEEEEEec--CCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChH
Confidence 99999999999988777776 456788999999999999999999999999999999999998764 7776654322
Q ss_pred cCCCcccccccc-ccccceEEEee----ecCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhh
Q 006736 264 LDTDSQLHSEKM-DDIQGVLTLRM----YTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFF 338 (633)
Q Consensus 264 ~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~ 338 (633)
... .... +..+|++.... ..+..+..++|.++|+++++. ...++.++..+||+++++++|++++.
T Consensus 235 ~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~p~~~a~~~yda~~~~~~al~~ag 304 (364)
T 3lop_A 235 ILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAK-----DVDLSFRAVEGFVAAKVLAEAIRRAG 304 (364)
T ss_dssp HHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCT-----TCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCC-----CCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 111 1222 45678776652 225678899999999998862 12567899999999999999999973
Q ss_pred hcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhc-cccc-cccceEEccCCCCCCCcEEEEEeecCCe
Q 006736 339 DQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTG-VTGPIKFTSDRDLINPAYEVINVIGTGS 413 (633)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g-~~G~v~Fd~~g~r~~~~~~I~~~~~~~~ 413 (633)
.+ .++..+.++|+++ .|+| .+|+++|++++++......|.+++++++
T Consensus 305 ~~----------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~ 353 (364)
T 3lop_A 305 PK----------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGL 353 (364)
T ss_dssp SS----------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSC
T ss_pred CC----------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCc
Confidence 11 1489999999999 6999 9999999998877667778888876554
No 32
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=6e-37 Score=316.94 Aligned_cols=332 Identities=13% Similarity=0.117 Sum_probs=269.7
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcC
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNS-NPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGP 104 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~-~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~ 104 (633)
.++|+||+++|++. ..|.....|+++|++++|+ .||+ +|++|+++++|+++++..++..+++|+.+ +|.+||||
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~ 80 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGT 80 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence 35899999999984 4577889999999999998 6777 59999999999999999999999999985 99999999
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHH
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIA 183 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~ 183 (633)
.+|..+.++++++..+++|+|++.++++.++. ..+||+||+.|++..++.+++.++++++| ++++|+.|++||....+
T Consensus 81 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~ 159 (374)
T 3n0x_A 81 SSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVA 159 (374)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHH
Confidence 99999999999999999999998777777776 35899999999999999999988888888 89999999999999999
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-----CeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-----SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~-----~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
.+++.+++.|++++....++ .+..|++.+++++++.+ +|+|++....... .++++.+.++...++.++..+
T Consensus 160 ~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~ 235 (374)
T 3n0x_A 160 AFKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGG 235 (374)
T ss_dssp HHHHHHTTTTCEEEEEEEEC--TTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECC
T ss_pred HHHHHHHHcCCEEeeeecCC--CCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeecc
Confidence 99999999999999888887 45678999999999888 9999987433211 234555555544445555433
Q ss_pred ccccccCCCccccccccccccceEEEeee---cCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHH
Q 006736 259 WLSSILDTDSQLHSEKMDDIQGVLTLRMY---TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIG 335 (633)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~ 335 (633)
...... . ......|+.+...+ .++.+..++|.++|+++|+ ..++.++..+||+++++++|++
T Consensus 236 ~~~~~~-------~-~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g-------~~p~~~a~~~Yda~~~l~~Al~ 300 (374)
T 3n0x_A 236 NILPAL-------A-AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN-------APPDFFTAGGFSAAMAVVTAVQ 300 (374)
T ss_dssp CCTTGG-------G-GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS-------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhh-------h-hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC-------CCCChhHHHHHHHHHHHHHHHH
Confidence 211110 1 11334566555433 3457889999999999997 4567899999999999999999
Q ss_pred HhhhcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecC
Q 006736 336 AFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGT 411 (633)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~ 411 (633)
++.. .++..+.++|++++|+|++|+++|++++++....+.|++++..
T Consensus 301 ~ag~-----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 301 KAKS-----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp HHTS-----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred HhCC-----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 8732 1489999999999999999999999654445678899998853
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=5.5e-36 Score=311.46 Aligned_cols=343 Identities=15% Similarity=0.159 Sum_probs=281.3
Q ss_pred CCCeEEEEEEeecCCc---cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcC
Q 006736 29 IPPVLNIGAVFALNST---IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGP 104 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~~---~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~ 104 (633)
..++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+++++.+ +|.+||||
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 96 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGS 96 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECC
Confidence 3578999999999843 46678899999999873 7999999999999999999999999998 89999999
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCc--cCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhH
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLS--SLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGI 182 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls--~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~ 182 (633)
.++..+.++.+++..+++|+|++.++++.++ ...+|++||+.|++..++.++++++.++||++|++|+.++.+|....
T Consensus 97 ~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 176 (386)
T 3sg0_A 97 SLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176 (386)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHH
Confidence 9999999999999999999999988777666 35679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCcccc
Q 006736 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSS 262 (633)
Q Consensus 183 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 262 (633)
+.+++.+++.|+++.....++ .+..++...++++++.++++|++.++...+..+++++++.|+..+ +++.+++..
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~ 251 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYA--RSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGVAT 251 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGGCS
T ss_pred HHHHHHHHHcCCEEEEEEeeC--CCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccccCC
Confidence 999999999999988666666 345688899999999999999999998899999999999998753 566554332
Q ss_pred ccCCCccccccccccccceEEEeee------cC-C---ChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHH
Q 006736 263 ILDTDSQLHSEKMDDIQGVLTLRMY------TQ-S---SEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAH 332 (633)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~ 332 (633)
. ... .......+|++....+ .| . .+..++|.++|+++|+. ..++.++..+||+++++++
T Consensus 252 ~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~ 320 (386)
T 3sg0_A 252 E-EFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG------AAPTIFGVHLWDSMTLVEN 320 (386)
T ss_dssp H-HHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT------CCCCHHHHHHHHHHHHHHH
T ss_pred H-HHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC------CCCChhHHHHHHHHHHHHH
Confidence 1 110 1223567788776532 12 2 24589999999999862 2457899999999999999
Q ss_pred HHHHhhhcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhc-cccccccceEEccCCCC--CCCcEEEEEee
Q 006736 333 AIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVTGPIKFTSDRDL--INPAYEVINVI 409 (633)
Q Consensus 333 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~~G~v~Fd~~g~r--~~~~~~I~~~~ 409 (633)
|++++.+.... +.+.++..+.++|+++ .|+|++|+++|++++++ ....+.|++++
T Consensus 321 al~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~ 378 (386)
T 3sg0_A 321 AIPAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIR 378 (386)
T ss_dssp HHHHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEE
T ss_pred HHHHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEE
Confidence 99998654210 0122478999999999 89999999999987554 23568899999
Q ss_pred cCCeeEE
Q 006736 410 GTGSRRI 416 (633)
Q Consensus 410 ~~~~~~v 416 (633)
++.++.+
T Consensus 379 ~G~~~~~ 385 (386)
T 3sg0_A 379 DGAFRLK 385 (386)
T ss_dssp TTEEEEC
T ss_pred CCEEEec
Confidence 8877654
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=2e-33 Score=291.73 Aligned_cols=346 Identities=12% Similarity=0.037 Sum_probs=279.1
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCceEEEcCC
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE-NETVAIIGPQ 105 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~-~~v~aviG~~ 105 (633)
+++++||+++|++. .++.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+++. ++|.+|||+.
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 46899999999974 356788999999999999999985 899999999999999999999999997 7999999999
Q ss_pred chhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHH
Q 006736 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (633)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~ 185 (633)
++..+.++.+++...++|+|++.+... ...++++||+.+++..++..+++++.+.+|++|++|+.++.++....+.+
T Consensus 84 ~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 160 (385)
T 1pea_A 84 MSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVM 160 (385)
T ss_dssp SHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHH
Confidence 888888888999999999999765421 12357899999999999999999998889999999999888898899999
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 265 (633)
++.+++.|+++.....++...+..++...++++++.++++|++.+....+..++++++++|+....+.++..+ +... .
T Consensus 161 ~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~-~~~~-~ 238 (385)
T 1pea_A 161 RHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLT-TSEA-E 238 (385)
T ss_dssp HHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESS-CCHH-H
T ss_pred HHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecc-cchH-H
Confidence 9999999999886655552236678899999998888999999888889999999999999875444455443 3211 1
Q ss_pred CCccccccccccccceEEEeeec--CCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCC
Q 006736 266 TDSQLHSEKMDDIQGVLTLRMYT--QSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGN 343 (633)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~ 343 (633)
.. ....+..+|+++..++. .+.+..++|.++|+++|+. ...++.++..+|||++++++|++++...
T Consensus 239 ~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-----~~~~~~~~~~~yda~~~~~~Al~~ag~~--- 306 (385)
T 1pea_A 239 VA----KMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPE-----NATITAWAEAAYWQTLLLGRAAQAAGNW--- 306 (385)
T ss_dssp HT----TSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCT-----TCCCCHHHHHHHHHHHHHHHHHHHHTSC---
T ss_pred HH----hcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCC-----CCCCChHHHHHHHHHHHHHHHHHHhCCC---
Confidence 10 11113567888776554 3467899999999998862 1245678999999999999999987311
Q ss_pred cccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEe-ecCCeeEEeee
Q 006736 344 ISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINV-IGTGSRRIGYW 419 (633)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~-~~~~~~~vg~w 419 (633)
++..+.++|++++|+|++|+++||+++++....+.|.++ +++.++.|...
T Consensus 307 --------------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 307 --------------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp --------------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred --------------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 488999999999999999999999966545567788888 67778777654
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=5e-34 Score=293.89 Aligned_cols=341 Identities=13% Similarity=0.107 Sum_probs=280.1
Q ss_pred CCCeEEEEEEeecCCc---cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcC
Q 006736 29 IPPVLNIGAVFALNST---IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGP 104 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~~---~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~ 104 (633)
..++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+.+++.+ +|.+|||+
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 4578999999999843 46678899999999883 7999999999999999999999999998 89999999
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHH
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAA 184 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~ 184 (633)
.++..+.++.+++..+++|+|++.+. + +....++++||+.|++..++.++++++.++||++|++|+.++.+|....+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998766 3 334567999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCcccccc
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSIL 264 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 264 (633)
+++.+++.|+++.....++ .+..++...++++++.++++|++.+....+..+++++++.|+..+ ++...++....
T Consensus 155 ~~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~~ 229 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFA--RPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASMD 229 (362)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSHH
T ss_pred HHHHHHHcCCEEEEEeecC--CCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcHH
Confidence 9999999999988777776 345678888999998899999999989999999999999998764 56655443211
Q ss_pred CCCccccccccccccceEEEeee----------cCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHH
Q 006736 265 DTDSQLHSEKMDDIQGVLTLRMY----------TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAI 334 (633)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al 334 (633)
.. .......+|++....+ .|..+..++|.++|+++|+. ..++.++..+||+++++++|+
T Consensus 230 ~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~al 298 (362)
T 3snr_A 230 FI-----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP------SSRSQFAGHSYDAFKVLERVV 298 (362)
T ss_dssp HH-----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT------TCCCHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC------CCCCchhHhHHHHHHHHHHHH
Confidence 10 1223567788776532 12345689999999999862 246789999999999999999
Q ss_pred HHhhhcCCCcccccCcccccccCCCcccccccccCchHHHHHHHHhc-cccccccceEEccCCCC--CCCcEEEEEeecC
Q 006736 335 GAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQV-NMTGVTGPIKFTSDRDL--INPAYEVINVIGT 411 (633)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~-~f~g~~G~v~Fd~~g~r--~~~~~~I~~~~~~ 411 (633)
+++.+.... +.+.++..+.++|+++ .|+|++|+++|++++++ .+..+.|++++++
T Consensus 299 ~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G 356 (362)
T 3snr_A 299 PVALKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNG 356 (362)
T ss_dssp HHHHHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETT
T ss_pred HHhhccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECC
Confidence 998654210 0122478999999999 89999999999987543 3456899999988
Q ss_pred CeeEE
Q 006736 412 GSRRI 416 (633)
Q Consensus 412 ~~~~v 416 (633)
.++.|
T Consensus 357 ~~~~v 361 (362)
T 3snr_A 357 KYVIV 361 (362)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77654
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.95 E-value=1.3e-27 Score=238.94 Aligned_cols=307 Identities=12% Similarity=0.082 Sum_probs=239.7
Q ss_pred EEEEEeecC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhH
Q 006736 34 NIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (633)
Q Consensus 34 ~IG~l~p~~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~ 110 (633)
|||+++|++ +..|...+.|+++|. .|.+++++++|+.+++ +...+.++++++|.+||||.++..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 799999999 456788899999986 2789999999999987 5667788888899999999999999
Q ss_pred HHHHHhh-ccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHH
Q 006736 111 HLVSHIA-NEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (633)
Q Consensus 111 ~~va~~~-~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~ 189 (633)
.++++.+ ...++|+|++.+++. .....+.|+||+ +..+++.++++++.+.|.+++++|+.+++||+...+.|++.+
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~--~~~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGL--SPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCC--CHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEEC--CHHHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 789999999766542 222233455665 455578999999888899999999999999999999999999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccc--cccCCC
Q 006736 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLS--SILDTD 267 (633)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~--~~~~~~ 267 (633)
++.|.+++..+.+.. . .|+..+++++ ..++|+|++.+...++..+.++++..+... ..+.++.+. +. ..
T Consensus 147 ~~~Gg~vv~~~~y~~--~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~~---pl~~~~~~~~~s~-~~- 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYNL--P-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPNL---AIYASSRASASAT-NT- 217 (325)
T ss_dssp HHHHSSCCEEEEESS--T-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHH-HT-
T ss_pred HHcCCCcceeEecCC--H-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCCC---CEEEeccccccCC-CC-
Confidence 999999988888873 3 6999999998 478999999999999988888888765443 467776655 22 11
Q ss_pred ccccccccccccceEEEee-e--cCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCc
Q 006736 268 SQLHSEKMDDIQGVLTLRM-Y--TQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNI 344 (633)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~ 344 (633)
........+|++.... + .++.+.+++|.++|+..+ .+....+++|||+.++.+. .++.
T Consensus 218 ---~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~---------~~~rl~AlgyDA~~l~~~l-~~l~------ 278 (325)
T 2h4a_A 218 ---NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY---------QLMRLYAMGADAWLLINQF-NELR------ 278 (325)
T ss_dssp ---CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHHHHTH-HHHH------
T ss_pred ---CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc---------chHHHHHHHHHHHHHHHHH-HHHh------
Confidence 1233467889887763 3 345667888887765433 1345679999999986654 2221
Q ss_pred ccccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEE
Q 006736 345 SFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRI 416 (633)
Q Consensus 345 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~v 416 (633)
.+.+..|+|++|.++||++|+. ...+.+.+++++.++.|
T Consensus 279 --------------------------------~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 279 --------------------------------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp --------------------------------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEEC
T ss_pred --------------------------------hCCCCeeccCceeEEECCCCeE-EEeechhhccCCeEEEe
Confidence 1233579999999999999984 57789999998887766
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.95 E-value=1.2e-27 Score=242.01 Aligned_cols=312 Identities=12% Similarity=0.062 Sum_probs=238.5
Q ss_pred EEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 33 LNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 33 i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
+|||+++|+|. ..|...+.|+++|++ |++++++++|+.+++..++ ...+..++|.+||||.+|+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 78999999984 457788899988852 5778999999999987654 44556679999999999988
Q ss_pred HHHHHHh-hccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHH
Q 006736 110 AHLVSHI-ANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDK 188 (633)
Q Consensus 110 ~~~va~~-~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~ 188 (633)
+.++++. .....+|+++..+++... ..+++||+.+++..++.++++++.+.+++++++++.+++||+...+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPNSR---AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTTCC---CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCcccc---cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 7776655 455667777644333322 348899999999999999999998899999999999999999999999999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCccccccCCCc
Q 006736 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDS 268 (633)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~ 268 (633)
+++.|++|+....++. . +....+..++..++|+|++.+...++..+++++++.|+..+ ++.++.+.......
T Consensus 148 ~~~~Gg~vv~~~~~~~--~--~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~~~~~~~~- 219 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNL--P--ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATNT- 219 (327)
T ss_dssp HHHHHSSCCEEEEESS--T--THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHT-
T ss_pred HHHCCCeEEEEEECCC--C--chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeeeccccccchh-
Confidence 9999999998888863 2 33456777888999999999999999999999999887553 67766543221110
Q ss_pred cccccccccccceEEEee---ecCCChHHHHHHHHHHHhhccCCCCCCCCCCchhHHHhhHHHHHHHHHHHhhhcCCCcc
Q 006736 269 QLHSEKMDDIQGVLTLRM---YTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (633)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~~~Al~~~~~~~~~~~ 345 (633)
.........|+.+... ..++.+..++|.++|++.++. ..+.+++|||+.++.++.+..
T Consensus 220 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---------~~~~AlgyDA~~l~~~l~~~~-------- 280 (327)
T 3ckm_A 220 --NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL---------MRLYAMGADAWLLINQFNELR-------- 280 (327)
T ss_dssp --CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH---------HHHHHHHHHHHHHHHTHHHHH--------
T ss_pred --cchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC---------CchHHHHHHHHHHHHHHHHhc--------
Confidence 0112234567666543 235677889999888877642 246788999998876544321
Q ss_pred cccCcccccccCCCcccccccccCchHHHHHHHHhccccccccceEEccCCCCCCCcEEEEEeecCCeeEEee
Q 006736 346 FSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGY 418 (633)
Q Consensus 346 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~l~~~l~~~~f~g~~G~v~Fd~~g~r~~~~~~I~~~~~~~~~~vg~ 418 (633)
.+....|+|++|.++||++|+ ....+.+.++++|.+++|..
T Consensus 281 -------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 281 -------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp -------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC-
T ss_pred -------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEccc
Confidence 122346999999999999997 45778899999999988864
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.49 E-value=1.9e-14 Score=143.97 Aligned_cols=121 Identities=28% Similarity=0.476 Sum_probs=88.6
Q ss_pred CCceEEEEecCCCCCcCcEEecC------CCCceeeeeHHHHHHHHHHCCCccceEEEeCC-CCC---CCCCHHhHHHHH
Q 006736 468 NGRHLRIGVPSQVIYPEFVAQGK------GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFG-DGH---NSPKRFDLLRLV 537 (633)
Q Consensus 468 ~~~~l~v~~~~~~~~~p~~~~~~------~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~-~~~---~~~~~~~~~~~l 537 (633)
.+++|+|++.. ++||.+.+. +++++.|+++||+++|++++|+++++..++.+ .|. .+.+|++++.+|
T Consensus 11 ~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 87 (312)
T 1yae_A 11 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 87 (312)
T ss_dssp CSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHH
T ss_pred cCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHH
Confidence 46789999984 589988762 36889999999999999999977444433221 121 147899999999
Q ss_pred HcCcccEEEeeeEeeccccceeeeccceeecceEEEEecCC-CCcCccccccCCc
Q 006736 538 SEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPFT 591 (633)
Q Consensus 538 ~~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~-~~~~~~~~l~pf~ 591 (633)
.+|++|++++++++|++|.+.++||.||+..+.+++++++. ...+++.|+.||+
T Consensus 88 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~ 142 (312)
T 1yae_A 88 IDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGS 142 (312)
T ss_dssp HTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------
T ss_pred hCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccc
Confidence 99999999988999999999999999999999999999876 4577888888886
No 39
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.45 E-value=1.1e-13 Score=133.16 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEE
Q 006736 468 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 546 (633)
Q Consensus 468 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 546 (633)
+.++|+||+.. +|+||.+.++ +|++.||++||+++|+++| |++ +++++ .+|.+++..|.+|++|+++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYK--FKFKT-------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEE--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCe--EEEEE-------CCHHHHHHHHHCCCCCEec
Confidence 46899999986 8999999886 8999999999999999998 855 66666 5699999999999999999
Q ss_pred eeeEeeccccceeeeccceeecc-eEEEEecCCCCcCccccccCCc
Q 006736 547 GDFAITTERTKMVDFTQPYIESG-LVVVAPIKKLNSNAWAFLNPFT 591 (633)
Q Consensus 547 ~~~~~~~~r~~~~~fs~p~~~~~-~~~lv~~~~~~~~~~~~l~pf~ 591 (633)
+++++|++|.+.++||.||+... ..+++++..........|....
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dL~g~~ 120 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKR 120 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCSSGGGGTTCE
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEeccccccCchHHhcCCe
Confidence 99999999999999999977655 4455555544455555555443
No 40
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.40 E-value=2.3e-13 Score=130.85 Aligned_cols=99 Identities=22% Similarity=0.315 Sum_probs=88.4
Q ss_pred CceEEEEecCCCCCcCcEEec--CCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEE
Q 006736 469 GRHLRIGVPSQVIYPEFVAQG--KGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 546 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~--~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 546 (633)
.++|+||+.. +|+||.+.. ++++++.||++||+++|++++|++ +++++ ..|.+++..|.+|++|+++
T Consensus 11 ~g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~-------~~~~~~~~~l~~g~~d~~~ 79 (243)
T 4h5g_A 11 KGKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILS-------MSFDNVLTSLQTGKADLAV 79 (243)
T ss_dssp HTEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CCEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEec-------ccHHHHHHHHHcCCCCccc
Confidence 3689999986 899998853 347899999999999999999966 66666 5699999999999999999
Q ss_pred eeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 547 GDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 547 ~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
+++++|++|.+.++||.||+..+.++++++..
T Consensus 80 ~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~ 111 (243)
T 4h5g_A 80 AGISATDERKEVFDFSIPYYENKISFLVHKAD 111 (243)
T ss_dssp SSCBCCHHHHTTEEECSCSBCCCEEEEEEGGG
T ss_pred ccccCChhHccEEEccCccccCcccccccccc
Confidence 99999999999999999999999999998765
No 41
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.40 E-value=2.4e-13 Score=132.08 Aligned_cols=107 Identities=26% Similarity=0.452 Sum_probs=90.9
Q ss_pred CceEEEEecCCCCCcCcEEecCC------CCceeeeeHHHHHHHHHHCCCccceEEEeCC-CCC---CCCCHHhHHHHHH
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKG------TDKFSGYCIDVFTAVLELLPYAVPYKLVPFG-DGH---NSPKRFDLLRLVS 538 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~------~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~ 538 (633)
+++|+|++. .++||.+.+.. ++++.||++||+++|++++|++++++.++.+ .|. .+.+|.+++.+|.
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTI---LEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEEC---CBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEe---cCCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 578999998 55899888753 4899999999999999999988555554421 111 1468999999999
Q ss_pred cCcccEEEeeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 539 EEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 539 ~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~ 119 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT 119 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999876
No 42
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.39 E-value=2.2e-13 Score=134.78 Aligned_cols=104 Identities=17% Similarity=0.357 Sum_probs=83.9
Q ss_pred ceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCC------CC----CCHHhHHHHHHc
Q 006736 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH------NS----PKRFDLLRLVSE 539 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~------~~----~~~~~~~~~l~~ 539 (633)
++++|++.. .|+||.+.+. ++++.||++||+++|++++|++ |+++.+.+++ .| .+|++++++|.+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~ 115 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLS 115 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHH
T ss_pred ceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHc
Confidence 689999986 8999988765 7899999999999999999977 5555544333 12 479999999999
Q ss_pred CcccEEEeeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 540 EVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 540 ~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
|++|++++++++|++|++.++||.||+..+++++++++.
T Consensus 116 g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~ 154 (292)
T 1pb7_A 116 GQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT 154 (292)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC
T ss_pred CCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc
Confidence 999999999999999999999999999999999999876
No 43
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.32 E-value=2.1e-12 Score=123.13 Aligned_cols=98 Identities=18% Similarity=0.317 Sum_probs=88.0
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++.. +|+||.+.++ ++++.|+++|+++++++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLT--CEWVK-------NDWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCC--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEE-------CCHHHHHHHHHCCCCCEEEeC
Confidence 4689999985 8999999875 7899999999999999999966 66666 469999999999999999899
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
++.|++|.+.++||.||+....+++++++.
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC
Confidence 999999999999999999999999998765
No 44
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.31 E-value=1.5e-12 Score=128.83 Aligned_cols=92 Identities=24% Similarity=0.430 Sum_probs=76.6
Q ss_pred ceeeeeHHHHHHHHHHCCCccceEEEeCCCCC----CCCCHHhHHHHHHcCcccEEEeeeEeeccccceeeeccceeecc
Q 006736 494 KFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH----NSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESG 569 (633)
Q Consensus 494 ~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~ 569 (633)
++.||++||+++|++++|++ ++++++++++ .+.+|++++.+|.+|++|++++++++|++|++.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 58999999999999999976 6665544433 45689999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCcCccccc
Q 006736 570 LVVVAPIKKLNSNAWAFL 587 (633)
Q Consensus 570 ~~~lv~~~~~~~~~~~~l 587 (633)
.+++++++.........|
T Consensus 145 ~~i~~~~~~~~i~~~~dL 162 (294)
T 2rc8_A 145 LGILVRTRGTELSGIHDP 162 (294)
T ss_dssp EEEEEETTSCCCCSTTCH
T ss_pred eEEEEECCCCCcCChhhh
Confidence 999999876333333333
No 45
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.31 E-value=2.2e-12 Score=125.49 Aligned_cols=105 Identities=20% Similarity=0.443 Sum_probs=88.8
Q ss_pred CceEEEEecCCCCCcCcEEecCC------CCceeeeeHHHHHHHHHHCCCccceEEEeCCC---C--CCC-CCHHhHHHH
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKG------TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGD---G--HNS-PKRFDLLRL 536 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~------~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~---~--~~~-~~~~~~~~~ 536 (633)
+++|+|++. +|+||.+.+.. ++++.||++||+++|++++|++ +++++... | ..+ .+|.+++.+
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGE 77 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHHH
Confidence 468999998 68999998752 3889999999999999999977 55555321 1 112 279999999
Q ss_pred HHcCcccEEEeeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 537 VSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 537 l~~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 78 l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 119 (263)
T 1mqi_A 78 LVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119 (263)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred HHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc
Confidence 999999999988999999999999999999999999999876
No 46
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.31 E-value=1.7e-12 Score=126.32 Aligned_cols=104 Identities=24% Similarity=0.376 Sum_probs=89.1
Q ss_pred CceEEEEecCCCCCcCcEEecCCC-----CceeeeeHHHHHHHHHHCCCccceEEEeCCCCC-----CCCCHHhHHHHHH
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGT-----DKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH-----NSPKRFDLLRLVS 538 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~-----~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ 538 (633)
+++|+|++. .++||.+.+. + +++.|+++||+++|++++|++ +++++..+++ .+.+|.+++.+|.
T Consensus 2 ~~~l~v~~~---~~pP~~~~~~-~~~g~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 75 (265)
T 2v3u_A 2 GVVLRVVTV---LEEPFVMVSE-NVLGKPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELV 75 (265)
T ss_dssp CCEEEEEEC---CBTTTBEEEC-CSTTCCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHH
T ss_pred CeEEEEEEe---ccCCeEEEec-CCCCCcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHHH
Confidence 678999998 4599998765 3 789999999999999999977 5555432211 2468999999999
Q ss_pred cCcccEEEeeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 539 EEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 539 ~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 76 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 115 (265)
T 2v3u_A 76 FKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT 115 (265)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred cCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC
Confidence 9999999988999999999999999999999999999876
No 47
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.29 E-value=2.9e-12 Score=126.17 Aligned_cols=111 Identities=23% Similarity=0.391 Sum_probs=87.6
Q ss_pred cCCCceEEEEecCCCCCcCcEEecC---CCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCC----CCCCHHhHHHHHH
Q 006736 466 PNNGRHLRIGVPSQVIYPEFVAQGK---GTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGH----NSPKRFDLLRLVS 538 (633)
Q Consensus 466 ~~~~~~l~v~~~~~~~~~p~~~~~~---~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ 538 (633)
|.++++||||+...+.+++|..... +.+++.|+++|+++++++++|++ |+++.+.+++ .+.+|++++.+|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHH
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHh
Confidence 3467888888876544544422111 02378999999999999999977 5555443332 3568999999999
Q ss_pred cCcccEEEeeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 539 EEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 539 ~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
+|++|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 142 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT 142 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc
Confidence 9999999999999999999999999999999999999876
No 48
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.28 E-value=6.5e-12 Score=119.98 Aligned_cols=107 Identities=22% Similarity=0.328 Sum_probs=92.1
Q ss_pred ceEEEEecCCCCCcCcEEe-cCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 470 RHLRIGVPSQVIYPEFVAQ-GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~-~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
++|+||+.. +|+||.+. +. ++++.|+++|+++++++++|++ +++++ .+|.+++.++.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHAT--CTFEA-------YIFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCE--EEEEE-------ECGGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCc--eEEEE-------cCHHHHHHHHhCCCCCEEEEc
Confidence 679999985 79999998 64 8899999999999999999976 55554 349999999999999999889
Q ss_pred eEeeccccceeeeccceeecceEEEEecCCCCcCccccccC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNP 589 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~p 589 (633)
++.+++|.+.++||.||+....+++++++.. ......|+.
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~dL~g 110 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDSK-ISTFDDLHG 110 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTCS-CCSGGGGTT
T ss_pred cccChhHhccceeeeeeeecceEEEEECCCC-CCCHHHhCC
Confidence 9999999999999999999999999998764 333444443
No 49
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.25 E-value=2e-11 Score=115.42 Aligned_cols=109 Identities=23% Similarity=0.338 Sum_probs=91.8
Q ss_pred ceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeee
Q 006736 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 549 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 549 (633)
++|+||+.. +|+||.+.++ ++++.|+++|+++++++++|++ +++++ .+|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAV--CTISN-------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCE--EEEEE-------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCe--EEEEe-------CCHHHHHHHHhCCCCCEEEecC
Confidence 579999985 7999999875 7899999999999999999966 66666 4699999999999999998889
Q ss_pred EeeccccceeeeccceeecceEEEEecCCCCcCccccccCC
Q 006736 550 AITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPF 590 (633)
Q Consensus 550 ~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf 590 (633)
+.+++|.+.+.||.||+.....++++++.........|+..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~~dL~g~ 110 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNTPLTLSKQGLKGK 110 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTSCCCCSTTTTTTC
T ss_pred cCCHhHHhheecccceeccceEEEEeCCCCCCCCHHHhCCC
Confidence 99999999999999999999999999887442334444433
No 50
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.23 E-value=1.2e-11 Score=118.78 Aligned_cols=108 Identities=23% Similarity=0.376 Sum_probs=93.3
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++.. +|+||.+.+. ++++.|+++|+++++++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVK--LKLVP-------TSWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCe--EEEEE-------ccHHHHHHHHhCCCcCEEEec
Confidence 4789999985 8999999875 8899999999999999999966 66666 469999999999999999888
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC-CCcCcccccc
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLN 588 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~-~~~~~~~~l~ 588 (633)
++.+++|.+.+.||.||+....+++++++. ........|+
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTTTTTCCSGGGGC
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCcccccCCHHHhc
Confidence 999999999999999999999999999884 2333444444
No 51
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.23 E-value=2.1e-11 Score=117.38 Aligned_cols=111 Identities=23% Similarity=0.432 Sum_probs=93.6
Q ss_pred CCceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEe
Q 006736 468 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 547 (633)
Q Consensus 468 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 547 (633)
..++|+|++.. +|+||.+. + ++++.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|++++
T Consensus 22 ~~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 22 MAKELVVGTDT--SFMPFEFK-Q-GDKYVGFDLDLWAEIAKGAGWT--YKIQP-------MDFAGLIPALQTQNIDVALS 88 (249)
T ss_dssp --CCEEEEEES--CBTTTBEE-E-TTEEESHHHHHHHHHHHHHTCC--EEEEE-------ECGGGHHHHHHTTSCSEEEE
T ss_pred cCceEEEEeCC--CCCCeEEe-c-CCeEEEEhHHHHHHHHHHcCCc--eEEEe-------cCHHHHHHHHHCCCCCEEEe
Confidence 45789999985 89999987 3 7899999999999999999977 55554 34999999999999999988
Q ss_pred eeEeeccccceeeeccceeecceEEEEecCCCCcCccccccCCc
Q 006736 548 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFT 591 (633)
Q Consensus 548 ~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf~ 591 (633)
+++.+++|.+.++||.||+....+++++++.........|+...
T Consensus 89 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~dL~g~~ 132 (249)
T 4f3p_A 89 GMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKV 132 (249)
T ss_dssp EEECCHHHHTTEEECSCCEEEEEEEEEETTCCSCCSSGGGTTSE
T ss_pred ccccCHHHHcCcceecceeeccEEEEEECCCCCcCChHHhCCCE
Confidence 99999999999999999999999999998874445455555443
No 52
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.23 E-value=1e-11 Score=118.65 Aligned_cols=108 Identities=19% Similarity=0.360 Sum_probs=92.9
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. +|+||.+.++ ++++.|+++|+++++++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 14 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAK--LVVVP-------TSWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEE-------CCTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCc--eEEEE-------eCHHHHHHHHHCCCcCEEEeC
Confidence 4789999975 7999999876 8899999999999999999966 66666 469999999999999999889
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC-CCcCcccccc
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLN 588 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~-~~~~~~~~l~ 588 (633)
++.+++|.+.++||.||+..+.++++++++ ........|+
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGGGGGGSSHHHHS
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCcccccCCHHHhc
Confidence 999999999999999999999999998865 2333344444
No 53
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.22 E-value=4.4e-11 Score=115.98 Aligned_cols=111 Identities=22% Similarity=0.357 Sum_probs=94.9
Q ss_pred CCceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEe
Q 006736 468 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 547 (633)
Q Consensus 468 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 547 (633)
..++|+|++.. .|+||.+.++ ++++.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCK--LNITE-------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCe--EEEEE-------cCHHHHHHHHhCCCCCEEEE
Confidence 35789999985 8999999875 7899999999999999999966 66666 56999999999999999989
Q ss_pred eeEeeccccceeeeccceeecceEEEEecCCC-CcCccccccCC
Q 006736 548 DFAITTERTKMVDFTQPYIESGLVVVAPIKKL-NSNAWAFLNPF 590 (633)
Q Consensus 548 ~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~-~~~~~~~l~pf 590 (633)
+++.+++|.+.++||.||+..+..++++++.. .......|+..
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~g~ 138 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNELNKY 138 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSCCCCCSGGGGGGS
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCCCCCCCHHHhCCC
Confidence 99999999999999999999999999987653 44444555443
No 54
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.20 E-value=4.4e-11 Score=116.50 Aligned_cols=108 Identities=15% Similarity=0.295 Sum_probs=92.0
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. +|+||.+.++ ++++.|+++|+++++++++|++ +++++. .+|.+++.++.+|++|+++ +
T Consensus 31 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~--~~~~~~------~~~~~~~~~l~~G~~D~~~-~ 98 (267)
T 3mpk_A 31 HPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLD--FEIIGV------DTVEELIAKLRSGEADMAG-A 98 (267)
T ss_dssp CSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCE--EEEEEE------SSHHHHHHHHHHTSCSEEE-E
T ss_pred CCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCe--EEEEec------CCHHHHHHHHHCCCccEEe-c
Confidence 4789999975 7999999875 7899999999999999999966 666642 4699999999999999975 8
Q ss_pred eEeeccccceeeeccceeecceEEEEecCCCCcCcccccc
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLN 588 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~ 588 (633)
++.+++|.+.+.||.||+....+++++++.........|+
T Consensus 99 ~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~~~~dL~ 138 (267)
T 3mpk_A 99 LFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLD 138 (267)
T ss_dssp EECCGGGTTTEEECSCSEEECEEEEEESSTTSCSSGGGCT
T ss_pred ccCChhhhcceEechhhccCceEEEEECCCCCCCCHHHHC
Confidence 8999999999999999999999999998854444444444
No 55
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.20 E-value=2.8e-11 Score=118.02 Aligned_cols=110 Identities=20% Similarity=0.267 Sum_probs=94.9
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. +|+||.+.++ ++++.|+++|+++.+++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 20 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 87 (268)
T 3hv1_A 20 EKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGID--VEWQA-------IDWDMKETELKNGTIDLIWNG 87 (268)
T ss_dssp HTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCE--EEEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCc--EEEEE-------CCHHHHHHHHHCCCCCEEEec
Confidence 4789999986 8999999875 7899999999999999999966 66666 459999999999999999888
Q ss_pred eEeeccccceeeeccceeecceEEEEecCCCCcCccccccCCc
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFT 591 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf~ 591 (633)
++.+++|.+.++||.||+....+++++++. .......|+...
T Consensus 88 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~i~~~~dL~g~~ 129 (268)
T 3hv1_A 88 YSVTDERKQSADFTEPYMVNEQVLVTKKSS-GIDSVAGMAGKT 129 (268)
T ss_dssp CBCCHHHHTTCEECCCCEEECEEEEEEGGG-CCCSSGGGTTCC
T ss_pred CccCHHHHhcCcCcHHHeeCceEEEEECCC-CCCCHHHhCCCE
Confidence 999999999999999999999999999876 444444455443
No 56
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.19 E-value=2.5e-11 Score=115.99 Aligned_cols=99 Identities=18% Similarity=0.302 Sum_probs=88.7
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++.. +|+||.+.++ ++++.|+++|+++++++++|++ ++++. .+|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVK--CTWVA-------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCe--EEEEe-------CCHHHHHHHHhCCCCCEEEEC
Confidence 4689999965 8999999875 7899999999999999999966 66666 469999999999999999888
Q ss_pred eEeeccccceeeeccceeecceEEEEecCCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKKL 579 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~ 579 (633)
++.+++|.+.++||.||+....+++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~ 101 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGSP 101 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTCC
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCCC
Confidence 8999999999999999999999999998763
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.19 E-value=6.1e-11 Score=112.74 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=94.1
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++.. +|+||.+.+. ++++.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|++ ++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 10 HRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMT--VEFRL-------GAWSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCC--EEEEE-------ECGGGHHHHHHTTSSSEE-EE
T ss_pred CCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCc--eEEEe-------CCHHHHHHHHhCCCeeEE-Ee
Confidence 4789999975 8999999875 7899999999999999999977 44544 459999999999999996 77
Q ss_pred eEeeccccceeeeccceeecceEEEEecCCCCcCccccccCCch
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFTP 592 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf~~ 592 (633)
++.+++|.+.+.||.|++....+++++++.........|+....
T Consensus 77 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~i 120 (234)
T 3h7m_A 77 ISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKV 120 (234)
T ss_dssp EECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCSSGGGGTTSCE
T ss_pred ccCCHhHHhhcCCCccccccceEEEEECCCCCCCCHHHhCCCEE
Confidence 89999999999999999999999999988753445555555444
No 58
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.19 E-value=2.4e-11 Score=118.74 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=93.8
Q ss_pred CceEEEEecCCCCCcCcEEecCCC---CceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEE
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGT---DKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAA 545 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~---~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 545 (633)
.++|+|++.. +|+||.+.+. + +++.|+++|+++++++++|++ ++++. .+|.+++.++.+|++|++
T Consensus 20 ~~~l~v~~~~--~~pP~~~~~~-~~~~g~~~G~~~dl~~~i~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 20 KGKIVVATSG--TLYPTSYHDT-DSGSDKLTGYEVEVVREAAKRLGLK--VEFKE-------MGIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp HTEEEEEECS--CBTTTBEEET-TTTCCEEECHHHHHHHHHHHHTTCE--EEEEE-------CCSTTHHHHHHHTSSSEE
T ss_pred CCeEEEEECC--CCCCeeEeCC-CCCCCCceeeHHHHHHHHHHHcCCe--EEEEE-------CCHHHHHHHHHCCCcCEE
Confidence 4689999985 8999999865 5 899999999999999999966 56665 459999999999999999
Q ss_pred EeeeEeeccccceeeeccceeecceEEEEecCCC-CcCccccccCCc
Q 006736 546 VGDFAITTERTKMVDFTQPYIESGLVVVAPIKKL-NSNAWAFLNPFT 591 (633)
Q Consensus 546 ~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~-~~~~~~~l~pf~ 591 (633)
+++++.+++|.+.++||.||+....+++++++.. .......|+...
T Consensus 88 ~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~i~~~~dL~g~~ 134 (271)
T 2iee_A 88 ANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKK 134 (271)
T ss_dssp CSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGGCSSGGGGTTCE
T ss_pred EeCCcCChhhccceEEeecceeCCeEEEEECCCCCCCCCHHHhCCCE
Confidence 8888899999999999999999999999998763 344445555443
No 59
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.17 E-value=8.1e-11 Score=111.76 Aligned_cols=110 Identities=29% Similarity=0.381 Sum_probs=89.6
Q ss_pred CceEEEEecCCCCCcCcEEe--cCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEE
Q 006736 469 GRHLRIGVPSQVIYPEFVAQ--GKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 546 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~--~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 546 (633)
.++|+||+. +|+||.+. +. ++++.|+++|+++.+++++|++ ++++.. .+|.+++.++.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEE
Confidence 467999997 58999997 44 7899999999999999999966 666662 2699999999999999999
Q ss_pred eeeEeecccc--ceeeeccceeecceEEEEecCCC-CcCccccccCC
Q 006736 547 GDFAITTERT--KMVDFTQPYIESGLVVVAPIKKL-NSNAWAFLNPF 590 (633)
Q Consensus 547 ~~~~~~~~r~--~~~~fs~p~~~~~~~~lv~~~~~-~~~~~~~l~pf 590 (633)
++++.+.+|. +.++||.||+....+++++++.. .......|+..
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~g~ 117 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNK 117 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTTCSSGGGGTTC
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCCCCCCCHHHhCCC
Confidence 8889999999 99999999999999999998763 33444444443
No 60
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.16 E-value=5.2e-11 Score=114.21 Aligned_cols=110 Identities=15% Similarity=0.252 Sum_probs=93.2
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCC-CccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEe
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLP-YAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 547 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 547 (633)
.++|+|++.. +|+||.+. . ++++.|+++||++.+++++| ++ +++++ .+|.+++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYD--VKFEK-------TEWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEE--EEEEE-------CCHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCce--EEEEe-------CCHHHHHHHHhCCCcCEEec
Confidence 4789999986 89999995 3 78999999999999999999 88 55555 45999999999999999998
Q ss_pred eeEeeccccceeeeccceeecceEEEEecCCCCcCccccccCCc
Q 006736 548 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFT 591 (633)
Q Consensus 548 ~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf~ 591 (633)
+++.+++|.+.+.||.||+....+++++++.........|+...
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~dL~g~~ 117 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIKSLDDIGGKS 117 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCSSGGGCTTCE
T ss_pred ccccChhhhhceeeccceecCceEEEEECCCCCCCCHHHhCCCE
Confidence 88999999999999999999999999998443444445554443
No 61
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.16 E-value=7.8e-11 Score=111.25 Aligned_cols=108 Identities=23% Similarity=0.396 Sum_probs=90.6
Q ss_pred ceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeee
Q 006736 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 549 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 549 (633)
++|+|++.. +|+||.+.+ ++++.|+++|+++.+++++|++ ++++. .+|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLD--YELKP-------MDFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEE-------ECGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEec--CCcEEEeeHHHHHHHHHHhCCE--EEEEE-------CCHHHHHHHHhCCCCCEEEEcC
Confidence 579999985 899999987 4799999999999999999976 55554 3599999999999999999888
Q ss_pred EeeccccceeeeccceeecceEEEEecCCCCcCccccccCC
Q 006736 550 AITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPF 590 (633)
Q Consensus 550 ~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf 590 (633)
+.+++|.+.+.|+.||+.....+++++++........|+..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 110 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGK 110 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTCCSCSSSTTTTTC
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCCCCCCCHHHhCCC
Confidence 89999999999999999999999999876433334444443
No 62
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.15 E-value=9.1e-11 Score=112.29 Aligned_cols=109 Identities=19% Similarity=0.237 Sum_probs=92.8
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++.. +|+||.+.+. ++++.|+++|+++.+++++|++ +++++ .+|.+++..|.+|++|+++++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKT--LDVRE-------FSFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCc--eEEEE-------cCHHHHHHHHhCCCcCEEEec
Confidence 4789999975 8999999876 8899999999999999999966 66666 469999999999999999888
Q ss_pred eEeeccccceeeecccee--ecceEEEEecCCCCcCccccccCCc
Q 006736 549 FAITTERTKMVDFTQPYI--ESGLVVVAPIKKLNSNAWAFLNPFT 591 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~--~~~~~~lv~~~~~~~~~~~~l~pf~ 591 (633)
++.+++|.+.++| .||+ ..+.+++++++. .......|+...
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~-~i~~~~dL~g~~ 120 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKGE-NKHPLPLTQYRS 120 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEESC-CSCCCCGGGSSC
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCCC-CCCCHHHhCCCE
Confidence 9999999999999 9999 899999998874 444455555443
No 63
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.14 E-value=1.3e-10 Score=110.01 Aligned_cols=98 Identities=26% Similarity=0.390 Sum_probs=88.0
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++.. +|+||.+.++ ++++.|+.+|+++.+++++|++ +++++ .+|.+++.++.+|++|+++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAE--CSFTN-------QSFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCe--EEEEE-------cCHHHHHHHHhCCCceEEEec
Confidence 5789999975 8999999875 7899999999999999999966 66665 469999999999999999878
Q ss_pred eEeeccccceeeeccceeec-ceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIES-GLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~-~~~~lv~~~~ 578 (633)
++.+++|.+.+.|+.|++.. ..+++++++.
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~ 103 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA 103 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC
Confidence 88999999999999999999 9999999876
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.12 E-value=8.1e-11 Score=113.82 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=90.9
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++. +|+||.+.++ ++++.|+++|+++++++++|++ +++++. ..|.+++.++.+|++|+++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~-~~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 79 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVA-DVVASI-------SEYGAMIPGLQAGRHDAITAG 79 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCC-EEEEEE-------CCGGGHHHHHHTTSCSEECSC
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCC-eeeEEe-------CCHHHHHHHHHCCCcCEEEec
Confidence 468999996 7999999875 7899999999999999999965 155555 459999999999999999888
Q ss_pred eEeeccccceeeeccceeecceEEEEecCCC-CcCcccccc
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKKL-NSNAWAFLN 588 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~-~~~~~~~l~ 588 (633)
++.+++|.+.++||.||+.....++++++.. .......|.
T Consensus 80 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 120 (257)
T 2q88_A 80 LFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIA 120 (257)
T ss_dssp CBCCHHHHTTSEECSCCCEECEEEEEETTCTTCCCBHHHHH
T ss_pred ccCCHHHHhccccccchhcCceEEEEECCCccCCCCHHHHh
Confidence 8999999999999999999999999998763 233334444
No 65
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.01 E-value=6.4e-10 Score=108.51 Aligned_cols=110 Identities=21% Similarity=0.309 Sum_probs=92.5
Q ss_pred CCceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEe
Q 006736 468 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 547 (633)
Q Consensus 468 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 547 (633)
+.++|+|++.. .|+||.+.+ ++++.|+.+|+++.+++++|++ +++++ ..|.+++.++.+|++|++++
T Consensus 40 ~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLD--YELKN-------IGWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCC--EEEEE-------CCHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCc--eEEEE-------CCHHHHHHHHhCCCCCEEEe
Confidence 35789999985 899999874 6899999999999999999966 66666 45999999999999999988
Q ss_pred eeEeeccccceeeeccceeecceEEEEecCCCCcCccccccCCc
Q 006736 548 DFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPFT 591 (633)
Q Consensus 548 ~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf~ 591 (633)
+++.+++|.+.+.|+.||+.....++++++.. ......|+...
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~-i~~~~dL~g~~ 149 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGSP-VKNALDLKGKT 149 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTCC-CCSGGGGTTSC
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCCC-CCCHHHhCCCe
Confidence 88889999999999999999999999998774 33344444433
No 66
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.98 E-value=5.8e-10 Score=105.34 Aligned_cols=96 Identities=22% Similarity=0.453 Sum_probs=80.7
Q ss_pred ceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeee
Q 006736 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 549 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 549 (633)
++|+||+. +++||.+. + ++++.|+++|+++.+++++|++ ++++.. .+|.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIE--SKLIEY------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCC--EEEEEC------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCc--EEEEEc------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999997 68999887 4 7889999999999999999966 666652 2699999999999999998888
Q ss_pred EeeccccceeeeccceeecceEEEEecCC
Q 006736 550 AITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 550 ~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
+.+.+|.+.+.|+.||+.....+++++++
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~ 98 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLE 98 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC--
T ss_pred ccCHHHHccceecccchhcceEEEEECCc
Confidence 89999999999999999999999998875
No 67
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=98.98 E-value=9.3e-10 Score=108.28 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=91.6
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHH----CCC-ccceEEEeCCCCCCCCCHHhHHHHHHcCccc
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLEL----LPY-AVPYKLVPFGDGHNSPKRFDLLRLVSEEVYD 543 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~----l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 543 (633)
.++|+||+.. +|+||.+.+. ++++.|+++|+++.|++. +|. .+++++++ ..|.+++..+.+|++|
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~-------~~~~~~~~~l~~g~~D 85 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIP-------ITSQNRIPLLQNGTFD 85 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEE-------CCTTTHHHHHHTTSCS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEE-------CCHHHHHHHHHCCCee
Confidence 4689999975 7999999875 789999999999999976 562 13467776 5699999999999999
Q ss_pred EEEeeeEeeccccceeeeccceeecceEEEEecCCCCcCccccccCC
Q 006736 544 AAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPF 590 (633)
Q Consensus 544 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf 590 (633)
+++++++.+++|.+.++||.||+..+..+++++++. ......|...
T Consensus 86 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~-i~sl~dL~g~ 131 (287)
T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGD-IKDFADLKGK 131 (287)
T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSS-CCSGGGGTTC
T ss_pred EEeccccCCcchhhcccccceeeecceEEEEECCCC-CCCHHHcCCC
Confidence 998888899999999999999999999999998763 3334444443
No 68
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.91 E-value=2.9e-09 Score=103.32 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=92.9
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++++|++.. +++||.+.+. ++++.|+++|+++.+++++|++ +++++ .+|.+++..+.+|++|+++++
T Consensus 30 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQ--LEVRE-------FAFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCe--EEEEe-------cCHHHHHHHHhCCCccEEeec
Confidence 4689999986 7899999876 8899999999999999999966 66666 469999999999999999888
Q ss_pred eEeeccccceeeecccee--ecceEEEEecCCCCcCccccccCCc
Q 006736 549 FAITTERTKMVDFTQPYI--ESGLVVVAPIKKLNSNAWAFLNPFT 591 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~--~~~~~~lv~~~~~~~~~~~~l~pf~ 591 (633)
++.+++|.+.++| .||+ ..+..++++++.........|+...
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~~~~dL~g~~ 141 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETPVLPLTQYSS 141 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSCCCCGGGSSC
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCCCCCCCHHHhCCCE
Confidence 9999999999999 9999 8999999998743444455555443
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=98.90 E-value=2.1e-09 Score=106.12 Aligned_cols=109 Identities=23% Similarity=0.306 Sum_probs=91.8
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC---CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEE
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAA 545 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 545 (633)
.++|+|++.. +|+||.+.+. ++...|+.+|+++.+++++ |++ +++++ ..|.+++..+.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~-------~~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENK--VQFVL-------VEAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTC--EEEEE-------CCGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCce--EEEEE-------cCHHHHHHHHhCCCeeEE
Confidence 3579999975 7999999875 7899999999999999999 966 66666 459999999999999999
Q ss_pred EeeeEeeccccceeeeccceeecceEEEEecCCCCcCccccccCC
Q 006736 546 VGDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPF 590 (633)
Q Consensus 546 ~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf 590 (633)
+++++.+.+|.+.++|+.||+..+..+++++++ .......|+..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-~i~~~~dL~g~ 154 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS-NITSVEDLKDK 154 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-CCCSSGGGTTS
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-CCCCHHHhCCC
Confidence 888889999999999999999999999999876 33334444433
No 70
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=98.89 E-value=2.8e-09 Score=103.57 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=92.3
Q ss_pred CceEEEEecCCCCCcCcEE---ecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEE
Q 006736 469 GRHLRIGVPSQVIYPEFVA---QGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAA 545 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~---~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 545 (633)
.++++|++.. .|+||.+ .+. ++++.|+++|+++.+++++|++ +++++ .+|.+++..+.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~~-~g~~~G~~~dl~~~~~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVDG-KNQIVGSDIELAKAIATELGVE--LELSP-------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEETT-EEEEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccCC-CCcEeeecHHHHHHHHHHHCCc--eEEEE-------cCHHHHHHHHhCCCccEE
Confidence 3589999985 8999998 664 7899999999999999999966 66666 469999999999999999
Q ss_pred EeeeEeeccccceeeeccceeecceEEEEecCC-CCcCccccccCC
Q 006736 546 VGDFAITTERTKMVDFTQPYIESGLVVVAPIKK-LNSNAWAFLNPF 590 (633)
Q Consensus 546 ~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~-~~~~~~~~l~pf 590 (633)
+++++.+++|.+.+.|+.|++.....++++++. ........|+..
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~g~ 151 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLAQK 151 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTTTCSSGGGGC-C
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCccccccCHHHhCCC
Confidence 888999999999999999999999999999874 234444444443
No 71
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=98.88 E-value=2.9e-09 Score=104.51 Aligned_cols=98 Identities=23% Similarity=0.360 Sum_probs=87.7
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+|++.. +|+||.+.++ ++.+.|+.+|+++.+++++|++ +++++ ..|.+++..|.+|++|++++.
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~--v~~~~-------~~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVK--VEFKE-------TQWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEE-------CCHHHHHHHHHCCCcCEEEec
Confidence 4689999985 6999999875 7899999999999999999966 66666 349999999999999999888
Q ss_pred eEe-eccccceeeeccceeecceEEEEecCC
Q 006736 549 FAI-TTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~-~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
++. +.+|.+.++|+.||+..+..++++++.
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~ 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC
Confidence 888 999999999999999999999999876
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=98.88 E-value=3.4e-09 Score=104.47 Aligned_cols=108 Identities=27% Similarity=0.364 Sum_probs=92.0
Q ss_pred ceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC---CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEE
Q 006736 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 546 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 546 (633)
++|+|++.. .|+||.+.++ ++++.|+.+|+++.+++++ |++ +++++ ..|.+++..|.+|++|+++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVL-------TEAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGG--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCce--EEEEE-------ccHHHHHHHHhCCCeeEEE
Confidence 579999975 7999999875 7899999999999999999 955 66666 4599999999999999998
Q ss_pred eeeEeeccccceeeeccceeecceEEEEecCCCCcCccccccCC
Q 006736 547 GDFAITTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNPF 590 (633)
Q Consensus 547 ~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~pf 590 (633)
++++.+.+|.+.++|+.||...+..++++++. .......|+..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~-~i~sl~dL~gk 165 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK-PITDMAQLKDQ 165 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS-CCCSGGGGTTS
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC-CCCCHHHhCCC
Confidence 88889999999999999999999999999876 33344445443
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.80 E-value=6.8e-09 Score=100.09 Aligned_cols=99 Identities=23% Similarity=0.388 Sum_probs=87.2
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC---CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEE
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAA 545 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 545 (633)
.++|+||+.. +++||.+.+..++++.|+.+|+++.+++++ |.+ +++++ .+|.+++..+.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~-------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVA-------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEE-------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEE-------cCHHHHHHHHhCCCCCEE
Confidence 3579999975 789999886447899999999999999999 965 66666 469999999999999999
Q ss_pred EeeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 546 VGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 546 ~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
+++++.+.+|.+.++|+.||+.....+++++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC
Confidence 887888999999999999999999999999876
No 74
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.60 E-value=3.3e-06 Score=81.99 Aligned_cols=209 Identities=11% Similarity=-0.004 Sum_probs=139.3
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-ceEEEcCC-chhh
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENE-TVAIIGPQ-FSVI 109 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~-v~aviG~~-~s~~ 109 (633)
++||++.|.. ..+......+++.+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 5899999864 444456677777777663 56666655556678887777888888888 99888644 3334
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc----CCcEEEEEEecC--CCcchhHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF----GWRNVIALYVDD--DHGRNGIA 183 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~----~w~~v~ii~~d~--~~g~~~~~ 183 (633)
.......+...++|+|......+. .+....+.++....+..++++|.+. |.++++++.... .......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 444556677889999987544321 1223456678888888899988777 899999998542 34456678
Q ss_pred HHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 184 ALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 184 ~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
.+++.+++. |+.+.....- ..+..+....+.++.+. ++++|+ +.+...+..+++++++.|+ ..+...++.+
T Consensus 148 gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAPYA--GDDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEECCBC--CSSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEEecC--CCcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 899999888 8877632211 12334444555555443 455443 4456677789999999997 3444555554
No 75
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.58 E-value=5.5e-06 Score=82.20 Aligned_cols=208 Identities=12% Similarity=0.052 Sum_probs=134.0
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchhhHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~~~ 111 (633)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++.+||. +..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 6899999875334445667777777663 45554432 23567777777778888889998775 44443323
Q ss_pred HHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc--CCcEEEEEEec--CCCcchhHHHHHH
Q 006736 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVD--DDHGRNGIAALGD 187 (633)
Q Consensus 112 ~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~d--~~~g~~~~~~~~~ 187 (633)
.....+...++|+|......+. .+.+..+.+++...+..++++|.+. |.+++++|... ........+.|++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3344556789999987554321 1233456677888888888887776 89999999864 2344566788999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
.+++.|+++....... .+..+....++++.+. ++++|+.. ....+..+++++++.|.. .+...++.+
T Consensus 148 ~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~p-~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE--EDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGKV-GKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECS--SCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTCT-TTSEEEEEC
T ss_pred HhcCCCCEEEEeecCC--CCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCCC-CCeEEEEeC
Confidence 9999998876433222 2334444555555443 45766654 445677789999999842 344455544
No 76
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.53 E-value=3.8e-06 Score=82.50 Aligned_cols=212 Identities=12% Similarity=-0.020 Sum_probs=133.9
Q ss_pred CCeEEEEEEeec---CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc
Q 006736 30 PPVLNIGAVFAL---NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (633)
Q Consensus 30 ~~~i~IG~l~p~---~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~ 106 (633)
..+.+||++.|. +..+......+++.+.++. |+++ .+.++..++....+....++..++.+||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEE--EEECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEE--EEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 356899999996 3455556777777777652 5554 45566667777666777788888998886433
Q ss_pred hhhHHHHHHhhcc-CCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC--CCcchhHH
Q 006736 107 SVIAHLVSHIANE-FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIA 183 (633)
Q Consensus 107 s~~~~~va~~~~~-~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~--~~g~~~~~ 183 (633)
......+ ..+.. .++|+|......+. +.+..+..+....+..++++|.+.|.+++++|..+. ..+....+
T Consensus 87 ~~~~~~~-~~l~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDEI-DDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHHH-HHHHHTCSSCEEEESCCCSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHHH-HHHHhcCCCCEEEEccccCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 2222233 34455 79999987543221 233455677777778888888778999999998653 24456678
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCC-CeEEEEeCc
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMES-GYVWIVTDW 259 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~~ 259 (633)
.|++.+++.|+.+.....+....+..+....++++.+ .++++|+. .....+..+++++++.|+..+ +...++.+.
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 237 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFDD 237 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEESC
T ss_pred HHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEeecC
Confidence 8999999998765422112211233333455555544 35676654 456667788999999998754 344555443
No 77
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.49 E-value=1.2e-05 Score=78.75 Aligned_cols=211 Identities=7% Similarity=-0.008 Sum_probs=133.2
Q ss_pred CeEEEEEEeecC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc-
Q 006736 31 PVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF- 106 (633)
Q Consensus 31 ~~i~IG~l~p~~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~- 106 (633)
.+.+||++.|.. ..+......+++.+.++. |+++.+...|+..++....+....++.+++.+||....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 356899999863 334445566777666653 56665544443567777666777788889998876433
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc-C-CcEEEEEEecC--CCcchhH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-G-WRNVIALYVDD--DHGRNGI 182 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~-~-w~~v~ii~~d~--~~g~~~~ 182 (633)
..........+...++|+|......+. .+.+..+.++....+..++++|.+. | .++++++.... .......
T Consensus 76 ~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~ 150 (289)
T 3brs_A 76 YEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDRE 150 (289)
T ss_dssp TTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHH
T ss_pred hHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHH
Confidence 332223344556689999987543321 1234567788888888888887664 6 99999998643 2345667
Q ss_pred HHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 183 AALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 183 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
+.|++.+++.|..+....... .+..+....+.++.+. .+++|+ +.....+..+++++++.|+. .+...++.+
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 151 EGLKIGLSDDSNKIEAIYYCD--SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHHGGGGGGEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHHhCCCcEEeeecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 889999998887643322111 2333444455555433 355544 45566778889999999986 444555544
No 78
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.46 E-value=1.1e-05 Score=78.84 Aligned_cols=212 Identities=11% Similarity=0.013 Sum_probs=131.0
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
....+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++.+||......
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 74 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY 74 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 3467899999864 334445667777777663 455544 56666777766667777888898887533222
Q ss_pred hHHHHHHhhcc-CCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEec--CCCcchhHHHH
Q 006736 109 IAHLVSHIANE-FQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD--DDHGRNGIAAL 185 (633)
Q Consensus 109 ~~~~va~~~~~-~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d--~~~g~~~~~~~ 185 (633)
.. .+.+.+.. .++|+|......+. . ++...+.++....+..++++|.+.|.++++++..+ ........+.+
T Consensus 75 ~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~ 148 (289)
T 1dbq_A 75 PE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 148 (289)
T ss_dssp CH-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred CH-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHH
Confidence 11 22333333 79999987553321 1 22345667778788888898888899999999754 33556778899
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
++.+++.|+.+.....+....+..+....++++.+ .++++|+. .....+..+++++++.|+..++ ...++.+
T Consensus 149 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vvg~d 223 (289)
T 1dbq_A 149 MKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYD 223 (289)
T ss_dssp HHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 99999998765322112111123334445555544 35676654 4566777899999999987543 4444444
No 79
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.44 E-value=1.3e-05 Score=79.06 Aligned_cols=214 Identities=9% Similarity=-0.007 Sum_probs=134.1
Q ss_pred CCeEEEEEEeecC--CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCceEEEcC-C
Q 006736 30 PPVLNIGAVFALN--STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVH-DTNYSRFLGMVEALTLLENETVAIIGP-Q 105 (633)
Q Consensus 30 ~~~i~IG~l~p~~--~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~v~aviG~-~ 105 (633)
..+.+||+++|.. ..+-.....+++.+.++. +|+.+.+... +...++..-.+....++.+++.+||-. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY-------SDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT-------GGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHH-------HhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4678999999984 344445566666666653 1566666554 344567666666777788899987753 3
Q ss_pred chhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCC--cEEEEEEec------CCC
Q 006736 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGW--RNVIALYVD------DDH 177 (633)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w--~~v~ii~~d------~~~ 177 (633)
...........+...++|+|......+.. +.+..+.++....+..++++|.+.|. ++++++... ...
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 33333444556667799999875443311 12455667888888888998888887 999999843 123
Q ss_pred cchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEE
Q 006736 178 GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (633)
Q Consensus 178 g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 255 (633)
.....+.|++.+++.|+.+..........+.......+.++.+ .++++|+...+. +..+++++++.|+ .+...+
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~di~vi 229 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SDFSLI 229 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CCcEEE
Confidence 4566788999999887643222111101122223333444332 357777766655 7779999999998 455555
Q ss_pred EeCc
Q 006736 256 VTDW 259 (633)
Q Consensus 256 ~~~~ 259 (633)
+.+.
T Consensus 230 g~d~ 233 (304)
T 3gbv_A 230 GYDL 233 (304)
T ss_dssp EESC
T ss_pred EeCC
Confidence 5553
No 80
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.44 E-value=2.7e-06 Score=83.34 Aligned_cols=209 Identities=11% Similarity=-0.026 Sum_probs=127.7
Q ss_pred CCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
..+.+||++.|.+..+......+++.+.++ .|+++. +.++..++....+....++.+++.+||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQK--------HHLHVA--VASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGG--------GTCEEE--EEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 457899999997222223444555544443 155554 4566667776666677778889998887443322
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC--CCcchhHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALGD 187 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~--~~g~~~~~~~~~ 187 (633)
...+..+ .++|+|......+. +.+..+..++...+..++++|.+.|.++++++.... .......+.|++
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1222222 78999987543321 234456677788888888988878999999998643 244566788999
Q ss_pred HHhhcCcEEEEEeec--CCCC----ChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 188 KLAEKRCRLSHKVPL--SPKG----SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~--~~~~----~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.+++.|+.+.....+ .... +..+....++++.+.++++|+. .....+..+++++++.|+..++ ...++.+
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 223 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVIIVGFD 223 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEEEEES
T ss_pred HHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEEEEeC
Confidence 999998765321111 1111 1222233444443337887664 4556677889999999986543 3444444
No 81
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.44 E-value=2.8e-05 Score=76.54 Aligned_cols=211 Identities=9% Similarity=-0.069 Sum_probs=130.9
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSV 108 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~ 108 (633)
++.+||++.|.. ..+......+++.+.++. |+++.+ +.++..++....+....++.+++.+||. +..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468999999874 344455677777777663 444432 2345667777777777888889998764 44444
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHH-cCCc-EEEEEEecC--CCcchhHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-FGWR-NVIALYVDD--DHGRNGIAA 184 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~-~~w~-~v~ii~~d~--~~g~~~~~~ 184 (633)
........+...++|+|...... .. .+.+..+..++...+..++++|.+ .|.+ +++++.... .......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 33344456667899999875431 11 134556677778888888888766 8887 999887542 233456778
Q ss_pred HHHHHhhcC--cEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 185 LGDKLAEKR--CRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 185 ~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~l~~i~~~~--~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
|++.+++.+ +++... .+....+..+....++++.... +++|+. .....+..+++++++.|+. .+...++.+
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~d 223 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGMM 223 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEECC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEeC
Confidence 888888765 443321 1111123344455566554433 455444 4445677789999999986 344445543
No 82
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.44 E-value=2.5e-05 Score=78.16 Aligned_cols=205 Identities=11% Similarity=0.001 Sum_probs=131.2
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC--ceEEEcCCch
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENE--TVAIIGPQFS 107 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~--v~aviG~~~s 107 (633)
.+.+||++.|.. ..+-.....+++.+.++. |+++ .+.++..++....+....++.++ +.+||.....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l--~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPY--VPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCE--EEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEE--EEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 457899999853 333335566666666553 4444 44566667776666777788888 9988864433
Q ss_pred h-hHHHHHHhhccCCccEEeeccCCCCCccCCC--CceEEecCChHHHHHHHHHHHHH--cCCcEEEEEEecC--CCcch
Q 006736 108 V-IAHLVSHIANEFQVPLLSFAATDPSLSSLQY--PFFVRTTQSDLYQMAAIADIVDY--FGWRNVIALYVDD--DHGRN 180 (633)
Q Consensus 108 ~-~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~--~~~~r~~p~~~~~~~al~~ll~~--~~w~~v~ii~~d~--~~g~~ 180 (633)
. ........+...++|+|......+......+ +.+..+..+....+..++++|.+ .|.++|++|.... .....
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 3 2223345556679999987554332111111 35667778888888888888766 6999999998642 23456
Q ss_pred hHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEeeChHHHHHHHHHHHHcCCC
Q 006736 181 GIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 181 ~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~---~~~vIvl~~~~~~~~~il~~a~~~g~~ 248 (633)
..+.|++.+++. |+.+.....-. .+..+....++++.+. ++++|+ +.....+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD--WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC--CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 678899999998 98875432211 2333444455554433 456554 45556778899999999976
No 83
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.42 E-value=1.4e-05 Score=78.34 Aligned_cols=208 Identities=13% Similarity=0.004 Sum_probs=134.7
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSV 108 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~ 108 (633)
.+.+||++.|.. ..+......+++.+.++. |+++ .+.++..++....+....++.+++.+||- |..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTA--IALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 457899999964 333334566666666652 4544 44566677777777777888889998774 55545
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHH--cCCcEEEEEEecCC--CcchhHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY--FGWRNVIALYVDDD--HGRNGIAA 184 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~--~~w~~v~ii~~d~~--~g~~~~~~ 184 (633)
........+...++|+|......+ +.+..+..+....+..++++|.+ .|-++++++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 555556677788999998754332 12345667778888888888877 79999999975432 33345778
Q ss_pred HHHHHhhc-CcEEEEEeecCCC-CChhhHHHHHHHhhcC-----CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEe
Q 006736 185 LGDKLAEK-RCRLSHKVPLSPK-GSRNQIIDTLLTVSSM-----MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVT 257 (633)
Q Consensus 185 ~~~~~~~~-g~~v~~~~~~~~~-~~~~~~~~~l~~i~~~-----~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 257 (633)
+++.+++. |+++.....+... .+.......+.++.+. ++++| ++.....+..+++++++.|+. +...++.
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vvg~ 223 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT--DIRTYGV 223 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC--SCEEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC--CeEEEEe
Confidence 89999888 6775433222211 1223333445554433 46666 455677888899999999986 4445554
Q ss_pred C
Q 006736 258 D 258 (633)
Q Consensus 258 ~ 258 (633)
+
T Consensus 224 d 224 (291)
T 3l49_A 224 D 224 (291)
T ss_dssp E
T ss_pred c
Confidence 4
No 84
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.40 E-value=1.2e-05 Score=79.01 Aligned_cols=205 Identities=9% Similarity=-0.021 Sum_probs=136.3
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchhh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~ 109 (633)
.++||++.|.. ..+......+++.+.++. |+++.+...++..++....+....++.+++.+||- +.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999885 444456677777777763 45555433222257777777788888889987774 454444
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcC--CcEEEEEEecC--CCcchhHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG--WRNVIALYVDD--DHGRNGIAAL 185 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~--w~~v~ii~~d~--~~g~~~~~~~ 185 (633)
.......+...++|+|......+... ..+.+..+..+....+..++++|.+.+ -++++++..+. .......+.|
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 34455667778999998765443211 123455667788888888999887777 89999997543 2344567889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMES 250 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~ 250 (633)
++.+++.|+++.... .. .........++++... ++++|+ +.....+..+++++++.|+..+
T Consensus 153 ~~~l~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 153 KTILQDKGIFFEELD-VG--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHTTCEEEEEE-CC--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHhcCCeEEEee-cC--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccC
Confidence 999999999887544 21 2334445555554433 456544 4556677888999999887543
No 85
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.39 E-value=1.8e-05 Score=77.96 Aligned_cols=190 Identities=8% Similarity=0.108 Sum_probs=122.4
Q ss_pred CCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
...+.+||++.+.+..+-.....|++ +.+++.|.+ .|.++.+.+.|+..++....+.+..+.+++|++||.....
T Consensus 5 ~~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~- 79 (302)
T 2qh8_A 5 MAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP- 79 (302)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH-
T ss_pred ccCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH-
Confidence 34689999984333333233444444 445556544 4779999999999999988888888888899998875432
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCc----c--CCCCceEEecCChHHHHHHHHHHHHHc--CCcEEEEEEecCC-Ccc
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLS----S--LQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGR 179 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls----~--~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~d~~-~g~ 179 (633)
....+.. ...++|+|......+... . ...+++..+.-. ......++++.+. |.+++++|+.... .+.
T Consensus 80 ~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~--~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~ 155 (302)
T 2qh8_A 80 TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDL--SPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECC--CCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECC--cCHHHHHHHHHHhCCCCcEEEEEecCCCcchH
Confidence 2223333 267999998765443211 0 112344444311 1244556777776 9999999996543 355
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 232 (633)
...+.+++.+++.|+.+...... +..+....++++.. ++++|+...+.
T Consensus 156 ~r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~D~ 203 (302)
T 2qh8_A 156 SLMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIAE-KSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHGG-GCSEEEECSCH
T ss_pred HHHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHhc-cCCEEEECCcH
Confidence 66788999999999987654322 34567777888764 68888876554
No 86
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.36 E-value=3.9e-05 Score=75.71 Aligned_cols=204 Identities=15% Similarity=0.050 Sum_probs=127.1
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCC-chhhH
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQ-FSVIA 110 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~-~s~~~ 110 (633)
-+||++.|.. ..+......+++.+.++ . |+ +++.+.++..++....+....++.+++.+||... .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKA---A-----PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHT---C-----TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHh---c-----CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 5799999863 33333445555544443 2 44 2455566777777766677778888999887643 33333
Q ss_pred HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHH------------cCCcEEEEEEecC--C
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY------------FGWRNVIALYVDD--D 176 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~------------~~w~~v~ii~~d~--~ 176 (633)
......+...++|+|......+......++.+..+..+....+..++++|.. .|-++|++|.... .
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3444556678999998754322110012345667788888888888887765 6778999998542 3
Q ss_pred CcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC----CCeEEEEeeChHHHHHHHHHHHHcC
Q 006736 177 HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM----MSRILILHTYDIWGLEVLNAAKHLR 246 (633)
Q Consensus 177 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~----~~~vIvl~~~~~~~~~il~~a~~~g 246 (633)
......+.|++.+++.|+.+.....+....+..+....++++... ++++|+. .+...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 345667889999999998654332222112333344455555443 4666554 55667778999999988
No 87
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.35 E-value=5.3e-05 Score=73.89 Aligned_cols=199 Identities=11% Similarity=0.006 Sum_probs=125.4
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
..+.+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALS 75 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGG
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3467899999863 33334556666665554 2566544 45556666655566677777999888643332
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~ 186 (633)
....+. .+. .++|+|......+ . +.+..+..+....+..++++|.+.|-+++++|..... ......+.|+
T Consensus 76 ~~~~~~-~l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 147 (285)
T 3c3k_A 76 ELPELQ-NII-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYL 147 (285)
T ss_dssp GHHHHH-HHH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ChHHHH-HHh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHH
Confidence 223333 345 8999998754322 1 1233456777777788888887789999999986532 3455677889
Q ss_pred HHHhhcCcEEE-EEeecCCCCChhhHHHHHHH--hhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC
Q 006736 187 DKLAEKRCRLS-HKVPLSPKGSRNQIIDTLLT--VSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG 251 (633)
Q Consensus 187 ~~~~~~g~~v~-~~~~~~~~~~~~~~~~~l~~--i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~ 251 (633)
+.+++.|+.+. ....+ +..+....+++ +.+. ++++|+. .....+..+++++++.|+..++
T Consensus 148 ~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~ 212 (285)
T 3c3k_A 148 NRLKFHGLDYSRISYAE----NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQ 212 (285)
T ss_dssp HHHHHHTCCCCEEEECS----SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHcCCCceEeecCC----ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 99999887653 11111 22233445555 5443 4676554 4566777889999999987554
No 88
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.34 E-value=5.8e-05 Score=74.85 Aligned_cols=206 Identities=10% Similarity=-0.026 Sum_probs=127.1
Q ss_pred EEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCceEEE-cCCchhhH
Q 006736 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVH-DTNYSRFLGMVEALTLLENETVAII-GPQFSVIA 110 (633)
Q Consensus 34 ~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~v~avi-G~~~s~~~ 110 (633)
+||++.|.. ..+......+++.+.++. |++ +.+. ++..++....+....++.+++.+|| .+..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~--~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GID--VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCE--EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCE--EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 333445667777776664 344 4454 4667888777788888988998766 45554433
Q ss_pred HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHH---cCCcEEEEEEecC--CCcchhHHHH
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY---FGWRNVIALYVDD--DHGRNGIAAL 185 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~---~~w~~v~ii~~d~--~~g~~~~~~~ 185 (633)
..+...+...+||+|.+....+. .. ...+....+....+...+++|.+ .|-+++++|.... .......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~~--~~--~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTKP--EC--RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCG--GG--CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCCC--CC--ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 44445667789999987543211 11 12232256777777888887655 5789999998542 2345566788
Q ss_pred HHHHhhc--CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 186 GDKLAEK--RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 186 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
++.+++. ++++.....-. .+..+....++++... ++++|+. .....+..+++++++.| . .+...++.+
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY--NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEeccCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 8888765 56655432212 2333444555555433 4555554 44556777899999988 5 444445544
No 89
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.34 E-value=7.3e-05 Score=73.62 Aligned_cols=212 Identities=10% Similarity=-0.022 Sum_probs=135.2
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchhh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~ 109 (633)
.-+||++.|.. ..+-.....+++.+.++. |+++.+. .++..++....+....++..++.+||- +.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 35799998875 333345667777777663 5565442 366677777777778888889998775 333333
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc--CCcEEEEEEecCC-CcchhHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRNGIAALG 186 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~d~~-~g~~~~~~~~ 186 (633)
.......+...++|+|......+.. +.+..+.++....+..++++|.+. |-++++++..... ......+.|+
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPDS-----HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTTS-----CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCC-----ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 3334456667899999875543311 123455678888888889888777 8999999985432 3334567888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 259 (633)
+.+++.|..+.....+....+..+....+.++.+. ++++| ++.....+..+++++++.|+. .+...++.+.
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~-~di~vig~d~ 222 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGI-FATEANGGVGVGDAVRLESRA-GEIQIISFDT 222 (305)
T ss_dssp HHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred HHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEE-EECCCcchhhHHHHHHhcCCC-CCeEEEEeCC
Confidence 88988876544332222122334444455554443 34543 345666788899999999987 4555666553
No 90
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.33 E-value=4e-05 Score=74.95 Aligned_cols=197 Identities=10% Similarity=0.003 Sum_probs=124.1
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc-hhhH
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF-SVIA 110 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~-s~~~ 110 (633)
.+||++.|.. ..+......+++.++++. |+++ .+.++..++....+....++.+++.+||.... ....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEA--TIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 5799999864 344445667777666652 4554 45566677777777777788889998886433 3322
Q ss_pred HHHHHhhccCCccEEeeccCCCCCccCCCCceEE-ecCChHHHHHHHHHHHHHc------CCcE--EEEEEecC--CCcc
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVR-TTQSDLYQMAAIADIVDYF------GWRN--VIALYVDD--DHGR 179 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r-~~p~~~~~~~al~~ll~~~------~w~~--v~ii~~d~--~~g~ 179 (633)
......+...++|+|......+. . +.... +..++...+..++++|.+. |.++ ++++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23334556689999987543321 1 12223 6677777788888887666 7888 66676432 2345
Q ss_pred hhHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCC
Q 006736 180 NGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 180 ~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~ 247 (633)
...+.|++.+++. |+++.....-. .+..+....++++.+ .++++|+. .....+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 6678899999998 88765322111 223333344555433 35776664 456677889999999987
No 91
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.33 E-value=4e-05 Score=75.00 Aligned_cols=209 Identities=12% Similarity=0.044 Sum_probs=133.1
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCch
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFS 107 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s 107 (633)
....+||++.|.. ..+-.....+++.+.++. |+++. +.++..++....+....++.+++.+||- +...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 4567899999874 333334556666555552 45544 4566677777777777888888887775 3333
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHH-c-CCc-----EEEEEEecC--CCc
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-F-GWR-----NVIALYVDD--DHG 178 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~-~-~w~-----~v~ii~~d~--~~g 178 (633)
.........+...++|+|......+. .+.+..+..+....+..++++|.+ + |-+ +++++.... ...
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33334445667789999987554332 123456677888888888887766 5 766 999998543 334
Q ss_pred chhHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEE
Q 006736 179 RNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (633)
Q Consensus 179 ~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 255 (633)
....+.|++.+++. |+.+.....-. .+..+....++++... ++++| ++.....+..+++++++.|+. +...+
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~--di~vi 225 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN--YDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS--GKIVV 225 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC--CCEEE
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC--CCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC--CeEEE
Confidence 45678899999998 98876543222 2334444555555443 45554 445666778899999999975 44444
Q ss_pred EeC
Q 006736 256 VTD 258 (633)
Q Consensus 256 ~~~ 258 (633)
+.+
T Consensus 226 g~d 228 (293)
T 3l6u_A 226 GID 228 (293)
T ss_dssp EEE
T ss_pred Eec
Confidence 443
No 92
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.32 E-value=3.9e-05 Score=75.53 Aligned_cols=205 Identities=8% Similarity=0.090 Sum_probs=130.2
Q ss_pred CCCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
...+++|||++--.+...-+....|+ .+.+++.|.. .|.++++.+.|..+|.......+.+++.+++++|++.. +
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~---~~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~-t 78 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGL---LDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA-T 78 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHH---HHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEES-H
T ss_pred hhcCCceEEEEEeecChhHHHHHHHH---HHHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcC-C
Confidence 34578999998544322223455666 4556667655 58899999999999999999999999999999998743 3
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCc---c---CCCCceEEecCChHHHHHHHHHHHHHc--CCcEEEEEEecCC-Cc
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLS---S---LQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HG 178 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls---~---~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~d~~-~g 178 (633)
..+.+++. ...++|+|..+.+++.-. . ..-+++..+.-.. -....+++++++ +.++++++|+..+ .+
T Consensus 79 ~aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~--~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 79 PTAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLS--PVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCC--CHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCc--CHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 33444433 345899998766665322 1 1123454433111 123345666554 6899999996543 23
Q ss_pred chhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChH---HHHHHHHHHHHcC
Q 006736 179 RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI---WGLEVLNAAKHLR 246 (633)
Q Consensus 179 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~---~~~~il~~a~~~g 246 (633)
....+.+++.+++.|+++.... . .+..++...++.+. .+.+++++..+.. ....+...+.+.+
T Consensus 155 ~~~~~~~~~~~~~~g~~~v~~~-~---~~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~~~~~ 220 (302)
T 3lkv_A 155 VSLMELLKLSAAKHGIKLVEAT-A---LKSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAANQAK 220 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-C---SSGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEe-c---CChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHHhhcC
Confidence 4556788888999999987543 2 24567777777765 4588888776653 2233344444444
No 93
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.32 E-value=2.7e-05 Score=76.21 Aligned_cols=212 Identities=11% Similarity=0.030 Sum_probs=130.8
Q ss_pred CCCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 29 IPPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 29 ~~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
...+.+||+++|.. ..+......+++.+.++ .|+.+.+ .++..++....+....++.+++.+||.....
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 82 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGN 82 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34567899999863 33333455666665554 2566544 4566677666666777777889988763322
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC-C--CcchhHHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-D--HGRNGIAA 184 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~-~--~g~~~~~~ 184 (633)
.....+ ..+...++|+|......+ . +.+..+..++...+..++++|.+.|.+++++|.... . ......+.
T Consensus 83 ~~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~G 155 (289)
T 2fep_A 83 ITDEHV-AEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQG 155 (289)
T ss_dssp CCHHHH-HHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHH
T ss_pred CCHHHH-HHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHH
Confidence 222223 334568999998754322 1 123345677777888888988888999999998653 2 34566788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCC-CeEEEEeC
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMES-GYVWIVTD 258 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~ 258 (633)
|++.+++.|+.+.....+....+..+-...++++.+. .+++|+ +.+...+..+++++++.|+..+ +...++.+
T Consensus 156 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 156 YKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 9999999987643211111112333344555665543 466655 4456678889999999998654 34445544
No 94
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=9.7e-05 Score=73.56 Aligned_cols=210 Identities=10% Similarity=0.031 Sum_probs=127.2
Q ss_pred CeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh-
Q 006736 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI- 109 (633)
Q Consensus 31 ~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~- 109 (633)
.+.+||++.|.+..+-.....+++.+.+ +. .|+++ .+.++..++....+....++.+++.+||.......
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~---~~----~g~~l--~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAM---FY----NGVSV--EIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHT---TS----SSCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHH---Hc----CCcEE--EEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 4678999998732222233444443332 22 14554 45566677777777777788889998887444332
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc--CCcEEEEEEecCC--CcchhHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAAL 185 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~d~~--~g~~~~~~~ 185 (633)
.......+...++|+|......+. .+.+..+.+++...+..++++|... |.++++++..... ......+.|
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 223344556689999987543221 1234456677777888888877664 8999999986432 345567888
Q ss_pred HHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 186 GDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 186 ~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
++.+++. |+.+.....-. .+..+....+.++.. ..+++|+. .....+..+++++++.|+ ..+...++.+
T Consensus 151 ~~al~~~pg~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gi-p~dv~vig~D 222 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKADAA--WERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGR-EKEMIFVGID 222 (325)
T ss_dssp HHHHHTCTEEEEEEEEECT--TSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTC-TTSSEEEEEE
T ss_pred HHHHHhCCCCEEEeeecCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCC-CCCeEEEEEC
Confidence 9999888 88765322111 223333344455433 35776664 445567778899999996 2344455544
No 95
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.30 E-value=5.4e-05 Score=74.66 Aligned_cols=212 Identities=11% Similarity=0.034 Sum_probs=129.0
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch-hh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS-VI 109 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s-~~ 109 (633)
+++||++.|.. ..+......+++.+.++. |+.+. +.++..++....+....++.+++.+||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 57999999974 334445566666666653 45544 45666677766666777777899988764333 22
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcC---CcEEEEEEecC--CCcchhHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG---WRNVIALYVDD--DHGRNGIAA 184 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~---w~~v~ii~~d~--~~g~~~~~~ 184 (633)
.......+...++|+|......+... ..+.+..+..+....+..+++.|.+.| -++++++.... .......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 12233445668999998754332111 001345566777777888888876665 78999998643 234456778
Q ss_pred HHHHHhhcCc-EEEEEeecCCCCChhhHHHHHHHhhc-----CCCeEEEEeeChHHHHHHHHHHHHcCCCCC-CeEEEEe
Q 006736 185 LGDKLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSS-----MMSRILILHTYDIWGLEVLNAAKHLRMMES-GYVWIVT 257 (633)
Q Consensus 185 ~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~l~~i~~-----~~~~vIvl~~~~~~~~~il~~a~~~g~~~~-~~~~i~~ 257 (633)
|++.+++.|. ++.....-. .+..+....++++.+ .++++|+. .+...+..+++++++.|+..+ +...++.
T Consensus 150 f~~al~~~g~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~ 226 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQSGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTGSI 226 (306)
T ss_dssp HHHHTTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHhhCCCeEEEEeccCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEEee
Confidence 9999988885 333211111 222333344444433 34676654 456667789999999998654 3344444
Q ss_pred C
Q 006736 258 D 258 (633)
Q Consensus 258 ~ 258 (633)
+
T Consensus 227 D 227 (306)
T 2vk2_A 227 D 227 (306)
T ss_dssp E
T ss_pred c
Confidence 3
No 96
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.29 E-value=0.00014 Score=70.74 Aligned_cols=206 Identities=14% Similarity=0.123 Sum_probs=125.8
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchhhH
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIA 110 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~~ 110 (633)
.+||++.|.. ..+......+++.+.++. |+.+ .+.++..++....+....++.++|++||- +......
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 71 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKI--IVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAV 71 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEE--EEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTT
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhh
Confidence 3689998864 333345566666666653 4554 44566667776666777788888988775 4333322
Q ss_pred HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc-C-CcEEEEEEecCC--CcchhHHHHH
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-G-WRNVIALYVDDD--HGRNGIAALG 186 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~-~-w~~v~ii~~d~~--~g~~~~~~~~ 186 (633)
......+...++|+|......+ .. +....+..++...++.++++|.+. | -++++++..... ......+.++
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~ 146 (283)
T 2ioy_A 72 VTAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFD 146 (283)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHH
Confidence 2233445678999998754321 11 123345566777778888877665 5 899999985432 2345677888
Q ss_pred HHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 187 DKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 187 ~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
+.+++. |+.+.....-. .+..+-...++++.+. .+++| ++.+...+..+++++++.|+ .+...++.+
T Consensus 147 ~al~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 147 EAIAKYPDIKIVAKQAAD--FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHHhCCCCEEEeeccCC--CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 999888 88764332211 2333333445554432 45554 44556678888999999997 444455544
No 97
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.29 E-value=5.9e-05 Score=73.84 Aligned_cols=211 Identities=13% Similarity=-0.021 Sum_probs=131.1
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
....+||++.|.. ..+-.....+++.+.++ .|+++. +.++..++....+....++.+++.+||......
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQ--------RGYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHH--------CCCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3567899999853 33333455666555554 255554 445556776666666777778899887643322
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~ 186 (633)
....+...+...++|+|......+. +.+..+..++...+..++++|...|.+++++|..... ......+.|+
T Consensus 88 ~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 161 (293)
T 2iks_A 88 PEHPFYQRWANDPFPIVALDRALDR------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFR 161 (293)
T ss_dssp TTCHHHHTTTTSSSCEEEEESCCCT------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCEEEECCccCc------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHH
Confidence 2222334556789999987543221 2234566777777888888887789999999986532 3456678899
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeCc
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTDW 259 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~~ 259 (633)
+.+++.|+.......-. .+..+-...++++.+. .+++|+ +.....+..+++++++.|+..++ ...++.+.
T Consensus 162 ~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 234 (293)
T 2iks_A 162 TAWKDDPREVHFLYANS--YEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAIATFGD 234 (293)
T ss_dssp HHHTTCCCCEEEEEESS--SCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEEEEESC
T ss_pred HHHHHcCCCccEEEcCC--CChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 99999987433221111 2333344555555443 466655 44556677889999999887543 44555543
No 98
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.28 E-value=6.8e-05 Score=72.43 Aligned_cols=208 Identities=8% Similarity=-0.049 Sum_probs=132.6
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHH
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~ 111 (633)
-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++....+....++.+++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 4799999874 333344556666555552 565544 45556777666667777788888777533321122
Q ss_pred HHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHHHHH
Q 006736 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKL 189 (633)
Q Consensus 112 ~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~~ 189 (633)
.....+...++|+|......+. +.+..+..+....+..+++.|.+.|.++++++..... ......+.|++.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLDP------AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCCT------TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCCc------cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 3345566789999986543321 1234456777888888889888889999999986533 3446678899999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhc--C-CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 006736 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--M-MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (633)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~-~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 259 (633)
++.|+.+.....-. .+..+....++++.+ . .+++|+ +.....+..+++++++.|+...+...++.+.
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 147 QGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALV-TTSYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp TTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEE-ESSHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred HHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEE-EeCchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 99998765433222 233344444444433 2 467654 4566778889999999998323455555553
No 99
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.26 E-value=8.8e-06 Score=79.01 Aligned_cols=205 Identities=13% Similarity=0.027 Sum_probs=116.6
Q ss_pred EEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 34 ~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
+||++.|.- ..+-.....+++.+.++ . |+++ .+.++..++....+....++.+++.+||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~-----g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLE---Q-----RYDL--ALFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGG---G-----TCEE--EECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH---C-----CCEE--EEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 489998853 32223344555444443 2 4544 345555554444445566677788887753332222 2
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC-C-----Ccc-hhHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-D-----HGR-NGIAAL 185 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~-~-----~g~-~~~~~~ 185 (633)
....+...++|+|......+ + +..+..+....+..++++|.+.|.++++++.... . ... ...+.|
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 33455668999998754322 1 3456677788888888988888999999998653 2 445 667889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE-EEEeC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYV-WIVTD 258 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~-~i~~~ 258 (633)
++.+++.|+.+.....+....+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+ .++.+
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 216 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVLGFD 216 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEEEES
T ss_pred HHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 999999987643111111011233344455555443 467666 6667778889999999998755433 34433
No 100
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.26 E-value=9.8e-05 Score=72.40 Aligned_cols=199 Identities=11% Similarity=0.089 Sum_probs=125.1
Q ss_pred eEEEEEEeec-CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhH
Q 006736 32 VLNIGAVFAL-NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (633)
Q Consensus 32 ~i~IG~l~p~-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~ 110 (633)
..+||++ |. +..+-.....|++.+ +++.|- .|.++.+.+.|+..++....+....+.++++++||..... ..
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~~---l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~-~~ 74 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQDG---LAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIATP-AA 74 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHHH---HHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESHH-HH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHHH---HHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCcH-HH
Confidence 4689988 53 332222344555444 344432 3568889899999999888878888888899988875432 22
Q ss_pred HHHHHhhccCCccEEeeccCCCCCc---c---CCCCceEEecCChHHHHHHHHHHHHHc--CCcEEEEEEecCC-Ccchh
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLS---S---LQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD-HGRNG 181 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls---~---~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~d~~-~g~~~ 181 (633)
..+.. ...++|+|..+...+... . ....++..+. +..-+...++++.+. |.+++++|+.... .+...
T Consensus 75 ~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r 150 (295)
T 3lft_A 75 QGLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQ 150 (295)
T ss_dssp HHHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHH
T ss_pred HHHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHH
Confidence 22222 247999998655443211 1 0112343333 222245566777776 8999999997643 24566
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCC
Q 006736 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 182 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~ 247 (633)
.+.+++.+++.|+.+...... +..+....++++.. ++++|+...+. .+...++++.+.+.
T Consensus 151 ~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~~-~~dai~~~~D~-~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 151 VEEFKAYAEKAGLTVETFAVP----STNEIASTVTVMTS-KVDAIWVPIDN-TIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHTT-TCSEEEECSCH-HHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHHh-cCCEEEECCch-hHHHHHHHHHHHHH
Confidence 788999999999987654332 24567777887764 78888776553 34445666776664
No 101
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.25 E-value=0.00012 Score=73.60 Aligned_cols=216 Identities=12% Similarity=0.032 Sum_probs=136.5
Q ss_pred eEEEEEEeecCC--ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh--cCceEEEcCCch
Q 006736 32 VLNIGAVFALNS--TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLE--NETVAIIGPQFS 107 (633)
Q Consensus 32 ~i~IG~l~p~~~--~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~--~~v~aviG~~~s 107 (633)
..+||++.|... .+-..+..+++.+.++. |+++.+ .++..++....+.+..++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 468999999752 34456677777777664 455544 4667788777778888888 588877764433
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCcc-------CCCC-ceEEecCChHHHHHHHHHHHHHcC------C-cEEEEEE
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSS-------LQYP-FFVRTTQSDLYQMAAIADIVDYFG------W-RNVIALY 172 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~-------~~~~-~~~r~~p~~~~~~~al~~ll~~~~------w-~~v~ii~ 172 (633)
.....+...+...+||+|......+.... ..++ ++..+.++....+..++++|.+.+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44455566778899999987665443211 1111 266677888888888888876655 4 7999988
Q ss_pred ecC--CCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEE-EEeeChHHHHHHHHHHHHcCCCC
Q 006736 173 VDD--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRIL-ILHTYDIWGLEVLNAAKHLRMME 249 (633)
Q Consensus 173 ~d~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vI-vl~~~~~~~~~il~~a~~~g~~~ 249 (633)
... .......+.|++.+++.|. +.....+....+.......++++....+++- |+++....+..+++++++.|+..
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~v 231 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKP 231 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCC
Confidence 543 2344567889999999886 2222122211233444445555544333332 34456677788999999999875
Q ss_pred CC-eEEEEeC
Q 006736 250 SG-YVWIVTD 258 (633)
Q Consensus 250 ~~-~~~i~~~ 258 (633)
++ ...++.+
T Consensus 232 P~di~vvg~d 241 (350)
T 3h75_A 232 GTDLLFSGVN 241 (350)
T ss_dssp TTTBEEEEES
T ss_pred CCCeEEEecC
Confidence 43 4444444
No 102
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.25 E-value=3e-05 Score=76.32 Aligned_cols=206 Identities=6% Similarity=-0.113 Sum_probs=130.0
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCch
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFS 107 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s 107 (633)
..+.+||+++|.. ..+-.....+++.+.++. |+++.+...+...++....+....++.+++.+||- +...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 3467999999964 333345566666666553 45555444333237777777788888889987774 4433
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcC-----CcEEEEEEecC--CCcch
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFG-----WRNVIALYVDD--DHGRN 180 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~-----w~~v~ii~~d~--~~g~~ 180 (633)
.........+. .++|+|......+.......+.+..+.++....+..++++|.+.+ -++++++.... .....
T Consensus 75 ~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~ 153 (304)
T 3o1i_D 75 HAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKP 153 (304)
T ss_dssp TSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CH
T ss_pred hHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHH
Confidence 32222234455 899999874433211111224566777888888888899888888 88999997542 34556
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh-cCCCeEEEEeeChHHHHHHHHHHHHcCCC
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS-SMMSRILILHTYDIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~-~~~~~vIvl~~~~~~~~~il~~a~~~g~~ 248 (633)
..+.|++.+++.|+.+.... ....+.......+.++. ..++++ | ++....+..+++++++.|+.
T Consensus 154 R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 154 VTTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 78899999999998876543 21123333333344333 346777 4 55778888899999998875
No 103
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.25 E-value=6.8e-05 Score=72.59 Aligned_cols=209 Identities=11% Similarity=0.043 Sum_probs=127.6
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhH
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA 110 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~ 110 (633)
+-+||++.|.. ..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.++|-.......
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNK--------AGYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQ 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHH--------TSCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCCH
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCH
Confidence 45799999863 33333455666655554 2455443 4555666666666677777788866642222112
Q ss_pred HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHHHH
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDK 188 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~ 188 (633)
.....+...++|+|......+ . +.+..+..+....+..++++|.+.|.++++++..... ......+.|++.
T Consensus 73 -~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 145 (275)
T 3d8u_A 73 -RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSA 145 (275)
T ss_dssp -HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHH
Confidence 223345567999998654322 1 2345567777778888888887789999999986532 345667889999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
+++.|+.+.....+....+..+....++++.+. .+++|+ +.....+..+++++++.|+..++ ...++.+
T Consensus 146 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 217 (275)
T 3d8u_A 146 MIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAIICLE 217 (275)
T ss_dssp HHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred HHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 999987643222222112333444455555443 467655 44566788899999999987554 3444443
No 104
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=98.25 E-value=2.1e-05 Score=77.00 Aligned_cols=211 Identities=8% Similarity=-0.070 Sum_probs=126.4
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHH---HHHHHHhcCceEEEcCC
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMV---EALTLLENETVAIIGPQ 105 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~---~~~~li~~~v~aviG~~ 105 (633)
..+.+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+ ....++..++.+||...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRA--------VHRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVIS 75 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEec
Confidence 3467899999864 33334455666655554 2566544 444445544444 55667777898887633
Q ss_pred chhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHH
Q 006736 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIA 183 (633)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~ 183 (633)
.......+ ..+...++|+|......+. +.+..+..+....+..++++|.+.|.+++++|..... ......+
T Consensus 76 ~~~~~~~~-~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 148 (290)
T 2rgy_A 76 HDLHDEDL-DELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLD 148 (290)
T ss_dssp SSSCHHHH-HHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHH
T ss_pred CCCCHHHH-HHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHH
Confidence 32222223 3445579999987543321 1233456777777888888888889999999986532 3445677
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.+++.+++.|+.+.....+....+..+-...++++.+ ..+++|+ +.....+..+++++++.|+..++ ...++.+
T Consensus 149 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 225 (290)
T 2rgy_A 149 GFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSVIGYD 225 (290)
T ss_dssp HHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 8999999988754211111111122333334444433 3577766 45666788899999999987543 4445544
No 105
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=98.24 E-value=3.6e-05 Score=76.99 Aligned_cols=210 Identities=9% Similarity=-0.004 Sum_probs=129.1
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
...+||++.|.. ..+......+++.+.++ .|+.+.+ .++..++....+....++.+++++||.......
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 467899999863 33334556666655554 2566544 455666666666666777788998876332222
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~ 187 (633)
...+ ..+...++|+|......+ . +.+..+..++...+..++++|...|.+++++|..... ......+.|++
T Consensus 132 ~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 132 EKIR-TSLKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHHH-HHHHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHH-HHHHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 2223 334467999998754322 1 1233456777777788888888889999999986532 34556788999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.+++.|+.+.....+....+..+-...++++.+..+++|+. .....+..+++++++.|+..++ ...++.+
T Consensus 205 al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig~D 275 (332)
T 2o20_A 205 ALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIISGA 275 (332)
T ss_dssp HHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred HHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEEeC
Confidence 99999976532111111112223333444443337887665 4566777899999999987554 3444444
No 106
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.24 E-value=4.5e-05 Score=76.47 Aligned_cols=211 Identities=13% Similarity=0.007 Sum_probs=134.9
Q ss_pred CeEEEEEEeec---CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 31 PVLNIGAVFAL---NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 31 ~~i~IG~l~p~---~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
..-+||+++|. +..+-.....+++.+.++. |+.+ .+.++..++....+....++..++++||-....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQL--LLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEE--EEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEE--EEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45789999997 2333344556665555552 5554 445566677766666777788899988864433
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC--CCcchhHHHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAAL 185 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~--~~g~~~~~~~ 185 (633)
.....+...+...++|+|......+. +.+..+..++...+..+++.|...|.+++++|.... .......+.|
T Consensus 130 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp SCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 33345667788889999986544322 122345677777788888888888999999997542 2344567889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
++.+++.|+.+.....+....+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 204 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 204 KDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 99999998765322112211233333444555543 3566655 45566777899999999987554 4455554
No 107
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=98.24 E-value=4.5e-05 Score=74.62 Aligned_cols=212 Identities=13% Similarity=0.051 Sum_probs=131.4
Q ss_pred CCeEEEEEEeec-----C-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc
Q 006736 30 PPVLNIGAVFAL-----N-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG 103 (633)
Q Consensus 30 ~~~i~IG~l~p~-----~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG 103 (633)
..+-+||+++|. . ..+-..+..+++.+.++. |+++ .+.++..+.....+....+...++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYAL--YMSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEE--EECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEE--EEEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 456789999997 2 333345566666555552 4554 44555555554444555566678998775
Q ss_pred CCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--Ccchh
Q 006736 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNG 181 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~ 181 (633)
....... .....+...++|+|......+.. +.+..+..+....+..++++|.+.|-++++++..... .....
T Consensus 76 ~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 3322222 34456677899999875443221 1234466777888888889888889999999986533 34456
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 182 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.+.|++.+++.|+.+.....+....+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 7889999999987643211111112334444555555544 566655 55666777899999999987543 3444444
No 108
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=98.21 E-value=8.5e-05 Score=74.55 Aligned_cols=208 Identities=10% Similarity=-0.028 Sum_probs=126.4
Q ss_pred CCCeEEEEEEeec--CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CChHHHHHHHHHHHhcCceEEEcC
Q 006736 29 IPPVLNIGAVFAL--NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN--YSRFLGMVEALTLLENETVAIIGP 104 (633)
Q Consensus 29 ~~~~i~IG~l~p~--~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~--~~~~~a~~~~~~li~~~v~aviG~ 104 (633)
...+.+||++.|. +..+-.....+++.+.++ .|+++.+...++. .++....+....++.+++.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYK--------LNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHH--------TTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHH--------cCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567899999996 334334556666655554 2566666655555 566666666777788889988875
Q ss_pred CchhhHHHHHHhhccCCccEEeeccCCCCCcc-CCCCceEEecCChHHHHHHHHHHHHH-cC-CcEEEEEEecCC-Ccch
Q 006736 105 QFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDY-FG-WRNVIALYVDDD-HGRN 180 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~~~~~r~~p~~~~~~~al~~ll~~-~~-w~~v~ii~~d~~-~g~~ 180 (633)
............+...++|+|........... ...+.+..+.++....+..++++|.. +| .+++++|..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 44432222233455678999876222211110 11233455677888888888888766 47 999999975432 3345
Q ss_pred hHHHHHHHHhhcCc-EEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCC
Q 006736 181 GIAALGDKLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 181 ~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~ 247 (633)
..+.|++.+++.|+ ..... +....+..+....++++.+ .++++|+ +.+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 56788888888876 33222 2211223333344444433 3466655 4456677888999999987
No 109
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=98.21 E-value=2.2e-05 Score=76.84 Aligned_cols=211 Identities=13% Similarity=0.051 Sum_probs=118.6
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
..+.+||++.|.. ..+......+++.+.++ .|+++.+. +++..++....+....++.+++.+||......
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 76 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIAL 76 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC-
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccC
Confidence 3467899999853 33333445555555443 25555443 15545555444556667777898877533322
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEec--CCCcchhHHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD--DDHGRNGIAALG 186 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d--~~~g~~~~~~~~ 186 (633)
.. .....+...++|+|......+. + +..+..+....+..++++|.+.|.+++++|... ........+.|+
T Consensus 77 ~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (290)
T 3clk_A 77 TD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYK 148 (290)
T ss_dssp ----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHH
Confidence 22 2234456689999987543221 2 345567777788888898887899999999854 334566788899
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
+.+++.|+.+.....+....+..+....++++.+ .++++|+. .....+..+++++++.|+..++ ...++.+
T Consensus 149 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 221 (290)
T 3clk_A 149 KALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPKDLSIVSID 221 (290)
T ss_dssp HHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 9999998765311111111223333445555543 45676554 4566777889999999987543 3444443
No 110
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=98.20 E-value=3.8e-05 Score=75.00 Aligned_cols=210 Identities=10% Similarity=0.017 Sum_probs=127.9
Q ss_pred eEEEEEEeec-----CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc
Q 006736 32 VLNIGAVFAL-----NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (633)
Q Consensus 32 ~i~IG~l~p~-----~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~ 106 (633)
+-+||++.|. +..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.+||....
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA--------VNYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH--------TTCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH--------cCCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4589999986 444444566777666665 2555543 444444444444556677778998876332
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAA 184 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~ 184 (633)
.... .....+...++|+|......+ . +.+..+..++...+..++++|.+.|.+++++|..... ......+.
T Consensus 74 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYND-PRVQFLLKQKFPFVAFGRSNP---D---WDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCST---T---CCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCc-HHHHHHHhcCCCEEEECCcCC---C---CCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2212 223445568999998754322 1 1233455677777888888887789999999986532 34566788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-C---CCeEEEEeeChHHHHHHHHHHHHcCCCCC-CeEEEEeCc
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-M---MSRILILHTYDIWGLEVLNAAKHLRMMES-GYVWIVTDW 259 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~---~~~vIvl~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~~ 259 (633)
|++.+++.|+.+.....+....+..+-...++++.+ . ++++|+. .....+..+++++++.|+..+ +...++.+.
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~d~ 225 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGFDD 225 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred HHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 999999988764321111111223333445555544 3 4666554 456677888999999998754 344555543
No 111
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=98.19 E-value=0.00011 Score=73.61 Aligned_cols=211 Identities=10% Similarity=0.001 Sum_probs=128.7
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
...+||++.|.. ..+...+..+++.+.++ .|+++.+ .++..++....+....++..++.+||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 457899999864 33333455666655554 2566544 556667766666667777778998875322211
Q ss_pred HHHHHHhhc-cCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHH
Q 006736 110 AHLVSHIAN-EFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (633)
Q Consensus 110 ~~~va~~~~-~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~ 186 (633)
. .....+. ..++|+|......+. . +....+..++...+..++++|.+.|.+++++|..... ......+.|+
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 1223333 369999987553321 1 1223566777777788888887789999999975432 3456678899
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
+.+++.|+.+.....+....+..+-...++++.+ ..+++|+. .+...+..+++++++.|+..++ ...++.+
T Consensus 201 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig~D 274 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYD 274 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEeEC
Confidence 9999998765322112111122333344555544 35676654 4566777889999999987543 4445544
No 112
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.19 E-value=0.00012 Score=72.03 Aligned_cols=215 Identities=9% Similarity=-0.028 Sum_probs=131.5
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchhh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~ 109 (633)
+++||++.|.. ..+-.....+++.+.++. |+++ .+.++ .++....+....++.+++.+||- |.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 68999999874 333445667777776664 4554 45555 47777777788888889987775 444444
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH-HcCCc-----EEEEEE-ecC--CCcch
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD-YFGWR-----NVIALY-VDD--DHGRN 180 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~-~~~w~-----~v~ii~-~d~--~~g~~ 180 (633)
.......+...++|+|......+.......+.+..+..+....+...+++|. +++-+ +++++. ... .....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 4444556777899999876432221111111334455667766776666653 43433 888886 332 23445
Q ss_pred hHHHHHHHHhhcCc---EEEEEeecCCCCChhhHHHHHHHhhcC--CCeE-EEEeeChHHHHHHHHHHHHcCCCCCCeEE
Q 006736 181 GIAALGDKLAEKRC---RLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRI-LILHTYDIWGLEVLNAAKHLRMMESGYVW 254 (633)
Q Consensus 181 ~~~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~v-Ivl~~~~~~~~~il~~a~~~g~~~~~~~~ 254 (633)
..+.|++.+++.|. ++.....- ..+.......++++... +++. +|++.....+..+++++++.|+...+...
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~v 228 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPTK--SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 228 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECS--SSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEeeccC--CCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEE
Confidence 67888999988775 23322211 12334445555555544 4555 45566777888899999999986423444
Q ss_pred EEeCc
Q 006736 255 IVTDW 259 (633)
Q Consensus 255 i~~~~ 259 (633)
++.+.
T Consensus 229 vG~D~ 233 (306)
T 8abp_A 229 IGING 233 (306)
T ss_dssp EEESS
T ss_pred EEeCc
Confidence 55543
No 113
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=98.15 E-value=0.00021 Score=69.68 Aligned_cols=211 Identities=6% Similarity=-0.040 Sum_probs=125.3
Q ss_pred CCeEEEEEEeecCC---ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc
Q 006736 30 PPVLNIGAVFALNS---TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (633)
Q Consensus 30 ~~~i~IG~l~p~~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~ 106 (633)
..+-+||+++|... .+-.....+++.+.++ .|+.+.+. +...+..........+..+++.+||-...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVVT--PHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEEC--CBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEEe--cCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 45678999999753 2223334444433322 25665544 33333322222222344567887764222
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAA 184 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~ 184 (633)
.... .....+...++|+|......+. +.+-.+..+....+..++++|.+.|-++++++..... ......+.
T Consensus 76 ~~~~-~~~~~l~~~~iPvV~i~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 76 EPND-PRVRFMTERNMPFVTHGRSDMG------IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCCSS------CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred CCCc-HHHHHHhhCCCCEEEECCcCCC------CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 2121 2345566789999986543321 1234456777888888889988889999999986533 34556788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
+++.+++.|+.+.....+....+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~d 224 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDIVSKQ 224 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEEEEEE
T ss_pred HHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 9999999998765432222223334445566666554 466655 55667778899999999987553 3344433
No 114
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=98.13 E-value=0.0003 Score=68.88 Aligned_cols=210 Identities=10% Similarity=0.066 Sum_probs=126.8
Q ss_pred CCeEEEEEEeecC------CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc
Q 006736 30 PPVLNIGAVFALN------STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG 103 (633)
Q Consensus 30 ~~~i~IG~l~p~~------~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG 103 (633)
..+-+||+++|.. ..+-..+..+++.+.++ .|+.+ .+.++..+.....+....+..+++.+||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~--------~g~~~--~~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ--------HGYGT--QTTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT--------TTCEE--EECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH--------CCCEE--EEEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 4567899999642 22222334444444333 25554 44555555555454555666778988775
Q ss_pred CCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--Ccchh
Q 006736 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNG 181 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~ 181 (633)
....... .....+...++|+|......+... . .+..+..+....+..+++.|.+.|.++++++..... .....
T Consensus 75 ~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~-~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEND-PIKQMLIDESMPFIVIGKPTSDID-H---QFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTTC-HHHHHHHHTTCCEEEESCCCSSGG-G---GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccCh-HHHHHHHhCCCCEEEECCCCcccc-C---CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 3322222 334556678999998754332210 0 233455667777888888887789999999986533 34456
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-----CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEE
Q 006736 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-----MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWI 255 (633)
Q Consensus 182 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-----~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i 255 (633)
.+.|++.+++.|+.+.... .. .+..+....++++.+ ..+++|+ +.+...+..+++++++.|+..++ ...+
T Consensus 150 ~~Gf~~al~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 225 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQIIE-TS--NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMTA 225 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC--SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEEE
T ss_pred HHHHHHHHHHcCCCeeEEe-cc--CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 7889999999998765221 11 233333334444432 2567654 56667788899999999987654 4445
Q ss_pred EeC
Q 006736 256 VTD 258 (633)
Q Consensus 256 ~~~ 258 (633)
+.+
T Consensus 226 g~D 228 (295)
T 3hcw_A 226 TFN 228 (295)
T ss_dssp EEC
T ss_pred EeC
Confidence 544
No 115
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=98.11 E-value=4.2e-05 Score=76.38 Aligned_cols=199 Identities=12% Similarity=0.059 Sum_probs=123.4
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
....+||++.|.. ..+......+++.+.++ .|+.+.+ .++..++....+....++.+++++|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 3467899999864 33334456666665554 2565544 45666776666667777778899888 43322
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~ 186 (633)
.. +.+...++|+|......+. . +..+..++...+..++++|...|.+++++|..... ......+.|+
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----N---IITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----T---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----C---CCEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 21 3355789999987543321 1 22445667777788888887789999999986532 3456678899
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCe
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~ 252 (633)
+.+++.|+.+. ...+....+..+-...++++.+ .++++|+. .....+..+++++++.|+..++-
T Consensus 196 ~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~d 260 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQE 260 (330)
T ss_dssp HHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCC
Confidence 99999998665 3222211121111222333333 35777664 45566778899999999875543
No 116
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=98.11 E-value=3.9e-05 Score=76.70 Aligned_cols=211 Identities=11% Similarity=0.014 Sum_probs=127.9
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
....+||++.|.. ..+......+++.+.++. |+.+.+ .++..++....+....++.+++++||......
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3467899999863 444445667777666652 565544 45555555555555666667888777533322
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC-C--CcchhHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-D--HGRNGIAAL 185 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~-~--~g~~~~~~~ 185 (633)
.... ...+...++|+|......+. +.+..+..++...+..++++|...|.+++++|.... . ......+.|
T Consensus 128 ~~~~-~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TEEH-VEELKKSPVPVVLAASIEST------NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CHHH-HHHHTTSSSCEEEESCCCSC------TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHH-HHHHHhCCCCEEEEccccCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 2222 33455689999987543321 123345567777778888888778999999998653 2 345667889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
++.+++.|+.+.....+....+..+-...++++.+. .+++|+ +.....+..+++++++.|+..++ ...++.+
T Consensus 201 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999987643111111111223333445555443 567666 45666778899999999986433 3445544
No 117
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=98.11 E-value=4e-05 Score=74.98 Aligned_cols=211 Identities=9% Similarity=-0.017 Sum_probs=131.3
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
....+||+++|.. ..+-..+..+++.+.++ .|+.+. +.++..++....+....++.+++.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARH--------KGYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4567899999874 33333455666655555 245544 455666777666667777778899887533332
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC--CCcchhHHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAALG 186 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~--~~g~~~~~~~~ 186 (633)
.......+...++|+|......+. +.+..+..+....+..++++|.+.|-++++++.... .......+.|+
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 223445667789999987554331 234556678888888888988888999999998653 23445678899
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
+.+++.|+.+..........+..+....+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 149 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 9999988764311111101111122233444432 3567655 46667788899999999987543 4445544
No 118
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=98.10 E-value=2.2e-05 Score=76.37 Aligned_cols=205 Identities=11% Similarity=0.030 Sum_probs=125.6
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
..-+||+++|.. ..+-.....+++.+.++. |+.+.+...+ ++....+....++.+++.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 457899999874 344455666666555542 5665554444 333333345566777899888 333222
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~ 189 (633)
...+.. .++|+|......+ .. +.+..+..+....+..++++|.+.|.++++++...........+.|++.+
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QA---STHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SS---CSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CC---CCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998755441 11 12233566778888888898888899999999865444566778899999
Q ss_pred hhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 190 AEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 190 ~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
++.|+.+.... .....+..+....++++.+. .+++|+ +.....+..+++++++.|+..++ ...++.+
T Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 99998765433 22222333444445554433 466654 45667788899999999987543 4445544
No 119
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=98.09 E-value=0.00022 Score=70.45 Aligned_cols=206 Identities=8% Similarity=-0.060 Sum_probs=131.4
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcC-Cchhh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGP-QFSVI 109 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~-~~s~~ 109 (633)
..+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....++.+++.+||-. .....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 35899999963 444456777877777763 55544 45666777777777778888888877753 33333
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCce-EEecCChHHHHHHHHHHHH-HcCCcEEEEEEecCC--CcchhHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFF-VRTTQSDLYQMAAIADIVD-YFGWRNVIALYVDDD--HGRNGIAAL 185 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~-~r~~p~~~~~~~al~~ll~-~~~w~~v~ii~~d~~--~g~~~~~~~ 185 (633)
.......+...++|+|......+. +.+ ..+..+....+..++++|. ..|-+++++|..... ......+.|
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf 145 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND------ADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQ 145 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT------SCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC------CCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHH
Confidence 234455667789999987554332 122 4456677878888888876 889999999985432 334456788
Q ss_pred HHHHhhc----CcEEEEEeecCCCCChhhHHHHHHHhhc---CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEE
Q 006736 186 GDKLAEK----RCRLSHKVPLSPKGSRNQIIDTLLTVSS---MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (633)
Q Consensus 186 ~~~~~~~----g~~v~~~~~~~~~~~~~~~~~~l~~i~~---~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 256 (633)
++.+++. ++.+....... ..+..+....++++.+ .++++|+ +.....+..+++++++.|+. .+...++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vig 220 (313)
T 3m9w_A 146 MKVLKPYVDSGKIKVVGDQWVD-GWLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS-GKVAISG 220 (313)
T ss_dssp HHHHHHHHHTTSEEEEEEEECG-GGCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT-TTSEECC
T ss_pred HHHHHhhccCCCEEEEeeccCC-CcCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC-CCcEEEe
Confidence 8888877 56665433211 1123333344444433 3566544 44566777899999999986 3333333
No 120
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=98.07 E-value=0.00025 Score=68.67 Aligned_cols=207 Identities=11% Similarity=0.016 Sum_probs=126.7
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
...-+||+++|.. ..+-.....+++.+.++ .|+.+. +.++..+.....+....++.+++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES--------RGYIGV--LFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT--------TTCEEE--EEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4567899999874 22223444555444443 245544 455566666666666777777888877543333
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC-C--cchhHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-H--GRNGIAAL 185 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~-~--g~~~~~~~ 185 (633)
......+...++|+|......+. . .+-.+..+....+..++++|.+.|-++++++..... . .....+.|
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~~---~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMDA---C---PWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCTT---C---SSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccCC---C---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 34455667789999987543321 1 123456777888888889888889999999987543 2 24556677
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE-EEEeC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV-WIVTD 258 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~-~i~~~ 258 (633)
++.+++.+. +... -........+....+.+.. .++++|+ +.+...+..+++++++.|+..++-+ .++.+
T Consensus 147 ~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~d 217 (276)
T 3jy6_A 147 LAAAQDVDV-LEVS--ESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATGFA 217 (276)
T ss_dssp HTTCSEEEE-EEEC--SSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEEBC
T ss_pred HHHHHhCCc-EEEe--ccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEEEC
Confidence 777777653 2111 1000122244444444543 3566554 4667778889999999998765444 44443
No 121
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=98.06 E-value=0.00013 Score=73.16 Aligned_cols=206 Identities=11% Similarity=0.027 Sum_probs=128.7
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
...-+||++.|.. ..+-.....+++.+.++ .|+.+. +.++..++....+....++.+++++||-.....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~ 135 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH 135 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3467899999874 33333445555444333 256654 455666777666667777888888777533222
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC---CCcchhHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD---DHGRNGIAAL 185 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~---~~g~~~~~~~ 185 (633)
.. .....+...++|+|....... .+....+..++...+..++++|...|.+++++|.... .......+.|
T Consensus 136 ~~-~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 208 (344)
T 3kjx_A 136 SE-AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGF 208 (344)
T ss_dssp CH-HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHH
Confidence 22 334556778999998742211 1223456677777888888888888999999998653 2344567889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 253 (633)
++.+++.|+.+.....+....+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+
T Consensus 209 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di 277 (344)
T 3kjx_A 209 TEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQI 277 (344)
T ss_dssp HHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCce
Confidence 99999999865433333211222333344444432 3577665 5566778889999999998765433
No 122
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=98.04 E-value=8.3e-05 Score=72.60 Aligned_cols=210 Identities=9% Similarity=0.048 Sum_probs=126.5
Q ss_pred CCCeEEEEEEeec--CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc
Q 006736 29 IPPVLNIGAVFAL--NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (633)
Q Consensus 29 ~~~~i~IG~l~p~--~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~ 106 (633)
.....+||+++|. +..+-.....+++.+.++. |+.+.+...+...+.. .+....+..+++.+||-...
T Consensus 8 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 8 SQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp ---CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESSC
T ss_pred cCCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEecC
Confidence 3456899999993 3334445666766666552 4554444333222211 12234455568888886444
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAA 184 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~ 184 (633)
......+.. ....++|+|......+ .+..+..+....+..++++|.+.|-++++++..+.. ......+.
T Consensus 78 ~~~~~~~~~-~~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g 148 (289)
T 3g85_A 78 SNYDLEYLN-KASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKG 148 (289)
T ss_dssp CHHHHHHHH-HCCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHH
T ss_pred CcccHHHHH-hccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHH
Confidence 433333333 3467999998755322 234566778888888899888889999999986533 34456788
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
|++.+++.|+.+.....+....+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 149 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 149 FIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 9999999987643211111112334444556665543 466654 55667788899999999987553 3344433
No 123
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=98.04 E-value=0.00038 Score=67.84 Aligned_cols=208 Identities=16% Similarity=0.107 Sum_probs=127.0
Q ss_pred CCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
...-+||++++.+..+-.....+++.+.++ .|+.+.+...+...+ ..+....++.+++++||-......
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATR--------RGYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHH--------TTCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHH--------CCCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCCC
Confidence 456789999944444434556666655555 256666555443322 334556677778998775333222
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC-CcchhHHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALGDK 188 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~-~g~~~~~~~~~~ 188 (633)
...+ ..+.. ++|+|......+ . +.+..+..+....+...+++|.+.|-++++++..... ......+.|++.
T Consensus 79 ~~~~-~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TDEL-GALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HHHH-HHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HHHH-HHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 2333 33445 999998754332 1 2334566777888888889888889999999986533 344667889999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
+++.|+.+.... +....+..+....++++.+. .+++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 151 l~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 151 MDRHGLSASATV-VTGGTTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp HHHTTCGGGEEE-ECCCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHCCCCCCccE-EECCCCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 999987632221 22122334444555555443 466554 45667778899999999987554 4445544
No 124
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=98.01 E-value=0.00018 Score=70.45 Aligned_cols=204 Identities=13% Similarity=0.098 Sum_probs=127.3
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc-hh--
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF-SV-- 108 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~-s~-- 108 (633)
-+||+++|.. ..+-..+..+++.+.++ .|+.+. +.++..++....+....++.+++.+||-... +.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE--------QGYSML--LTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 6899999974 33444566676666655 255554 4455667777677777788889988775332 21
Q ss_pred -hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC-CcchhHHHHH
Q 006736 109 -IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD-HGRNGIAALG 186 (633)
Q Consensus 109 -~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~-~g~~~~~~~~ 186 (633)
........+...++|+|......+.. .+..+..+....+..++++|.+.|-++++++..... ......+.|+
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~~------~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAEL------AAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTTC------SSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCCC------CCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 23344456677899999875543221 123356677778888889888889999999986433 3345677889
Q ss_pred HHHhhcCcEEEEEee--cCCCCChhhHHHHHHHhhcC--C--CeEEEEeeChHHHHHHHHHHHHcCCCCCCeE
Q 006736 187 DKLAEKRCRLSHKVP--LSPKGSRNQIIDTLLTVSSM--M--SRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~--~~~~~~~~~~~~~l~~i~~~--~--~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 253 (633)
+.+++.|+.+..... .............+.++.+. + +++|+ +.....+..+++++++.|+..++-+
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 231 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDM 231 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCce
Confidence 999998876431111 11000001112333333322 2 56554 4566778889999999998755433
No 125
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.99 E-value=0.00019 Score=70.30 Aligned_cols=209 Identities=10% Similarity=-0.001 Sum_probs=125.2
Q ss_pred CeEEEEEEeec-----CCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCC
Q 006736 31 PVLNIGAVFAL-----NSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQ 105 (633)
Q Consensus 31 ~~i~IG~l~p~-----~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~ 105 (633)
.+-+||+++|. +..+-.....+++.+.++ .|+.+.+...+. .+ ...+....+...++.+||-..
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~-~~--~~~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEP-GE--KYQSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECT-TC--CCHHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCC-hh--hHHHHHHHHHcCCCCEEEEeC
Confidence 45789999994 222223445555555544 267776665543 21 112223344455888777533
Q ss_pred chhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHH
Q 006736 106 FSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIA 183 (633)
Q Consensus 106 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~ 183 (633)
..... .....+...++|+|......+ . +.+-.+..+....+..++++|.+.|-++++++..... ......+
T Consensus 74 ~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 146 (294)
T 3qk7_A 74 TQPED-FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQ 146 (294)
T ss_dssp CCSSC-HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred CCCCh-HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHH
Confidence 22222 334556778999998755322 1 2234566777888888888888889999999986543 3345678
Q ss_pred HHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 184 ALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.|++.+++.|+.+.....+....+..+....++++.+. .+++|+ +++...+..+++++++.|+..++ ...++.+
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 89999999987642111111012233333445554433 566654 45667788899999999987653 4455554
No 126
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.96 E-value=0.00025 Score=69.70 Aligned_cols=209 Identities=9% Similarity=-0.007 Sum_probs=127.8
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
...-+||+++|.. ..+-.....+++.+.++. |+.+. +.++..++....+....++.+++.+||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3467899999964 334445667776666652 45554 445555666555566667777899877643333
Q ss_pred hHH-HHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHH
Q 006736 109 IAH-LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAAL 185 (633)
Q Consensus 109 ~~~-~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~ 185 (633)
... .+..+ .. ++|+|......+. . +-.+..+....+..+++.|.+.|-++++++..... ......+.|
T Consensus 83 ~~~~~~~~l-~~-~iPvV~i~~~~~~----~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAAV-LE-GVPAVTINSRVPG----R---VGSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHHH-HT-TSCEEEESCCCTT----C---CCEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHHH-hC-CCCEEEECCcCCC----C---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 222 34444 44 9999987554432 2 22345677777888888888889999999985432 344567889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-----hcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCC-CeEEEEe
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-----SSM--MSRILILHTYDIWGLEVLNAAKHLRMMES-GYVWIVT 257 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-----~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~-~~~~i~~ 257 (633)
++.+++.|+.+..........+..+....++++ .+. .+++|+ +.+...+..+++++++.|+..+ +...++.
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~ 232 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDLSIVGI 232 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 999999987643111111112333444455555 443 466554 4556677889999999998754 3444554
Q ss_pred C
Q 006736 258 D 258 (633)
Q Consensus 258 ~ 258 (633)
+
T Consensus 233 D 233 (303)
T 3kke_A 233 N 233 (303)
T ss_dssp S
T ss_pred c
Confidence 4
No 127
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.92 E-value=0.0016 Score=62.66 Aligned_cols=205 Identities=14% Similarity=0.093 Sum_probs=120.7
Q ss_pred EEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchhhHH
Q 006736 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVIAH 111 (633)
Q Consensus 34 ~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~~~ 111 (633)
+||++.|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....++.++++++|- +.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLV--VLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 689998863 333334556666555543 45544 3455566665555666777778998774 33333222
Q ss_pred HHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc--CCcEEEEEEecCC--CcchhHHHHHH
Q 006736 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF--GWRNVIALYVDDD--HGRNGIAALGD 187 (633)
Q Consensus 112 ~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~d~~--~g~~~~~~~~~ 187 (633)
.....+...++|+|......+. . +....+..+...-+...+++|.+. +-++++++..... ......+.|++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQATK---G--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCSS---S--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCCC---C--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 2334456679999987543221 1 112235566777777778877655 5689999985432 23456778999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
.+++.|+.+.....-. .+..+-...++++.. ..+++ |++.+...+..+++++++.|+ .+...++.+
T Consensus 148 al~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~a-i~~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 148 AVAAHKFNVLASQPAD--FDRIKGLNVMQNLLTAHPDVQA-VFAQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHTCEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCE-EEESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHhcCCCEEEEecCCC--CCHHHHHHHHHHHHHhCCCccE-EEECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 9999998765332111 222333334444433 24565 445566678889999999997 344455544
No 128
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.91 E-value=0.00081 Score=65.01 Aligned_cols=199 Identities=9% Similarity=-0.049 Sum_probs=118.6
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
..+.+||++.|.. ..+-.....+++.+.++ .|+.+.+.. +..++.... ++ ++.+||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~----~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCS--GKKSHLFIP----EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEE--STTTTTCCC----TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEe--CCCCHHHHh----hc---cccEEEEecCCC
Confidence 4567899999863 33333455565555543 256665543 332222111 11 677666432222
Q ss_pred hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALG 186 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~ 186 (633)
....+ ..+...++|+|......+ . +.+..+..++...+..+++.|.+.|.++++++..+.. ......+.|+
T Consensus 69 ~~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 22233 344568999998644322 1 2345666777777888888887889999999986532 3445677888
Q ss_pred HHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC---CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEE
Q 006736 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM---MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIV 256 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~---~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~ 256 (633)
+.+++.|+.+. ...-. .+..+....++++.+. ++++|+ +.....+..+++++++.|+..++-+.+.
T Consensus 142 ~~l~~~g~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 142 RELTRFGIPYE-IIQGD--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHTTCCEE-EEECC--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHcCCCee-EEeCC--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999998765 21111 2333444555555543 466654 4556677889999999998755444433
No 129
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.90 E-value=0.00059 Score=68.53 Aligned_cols=208 Identities=11% Similarity=-0.004 Sum_probs=122.3
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
...+||++.|.. ..+...+..+++.+.++ .|+.+.+ .++..++....+....++..++++||.......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999863 33333455666555554 2555544 455556665555666677778887775433322
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~ 187 (633)
. .....+...++|+|......+. .. .+..+..++...+..++++|...|.+++++|..... ......+.|++
T Consensus 135 ~-~~~~~l~~~~iPvV~i~~~~~~--~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 A-NQLEDLQKQGMPVVLVDRELPG--DS---TIPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp H-HHHHHHHHC-CCEEEESSCCSC--C----CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhCCCCEEEEcccCCC--CC---CCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2 2234455689999987543221 01 122345666767788888887789999999985432 34456788999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~-~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.+++.|+..... +....+..+-...++++.+.. + .|++.....+..+++++++.|+..++ ...++.+
T Consensus 209 al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D 277 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFD 277 (348)
T ss_dssp HHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 999988732111 111122233334455554433 4 44456677788899999999987543 4445544
No 130
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.88 E-value=0.0011 Score=66.87 Aligned_cols=205 Identities=14% Similarity=0.101 Sum_probs=125.9
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
..-+||+++|.. ..+-.....+++.+.++ .|+.+. +.++..++....+....++..++.++|-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLL--LGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356899999874 22223445555555444 256654 4455566666666666777778887775332222
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--C-cchhHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--H-GRNGIAALG 186 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~-g~~~~~~~~ 186 (633)
. .....+...++|+|....... .+....+..+....+..+++.|...|.+++++|..... . .....+.|+
T Consensus 139 ~-~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 E-QTIRLLQRASIPIVEIWEKPA------HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp H-HHHHHHHHCCSCEEEESSCCS------SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEECCccC------CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 2 334556678999998632211 12234566777878888888888889999999987533 2 456788999
Q ss_pred HHHhhcCcEEEEEeec-CCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE
Q 006736 187 DKLAEKRCRLSHKVPL-SPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (633)
Q Consensus 187 ~~~~~~g~~v~~~~~~-~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 253 (633)
+.+++.|+.+.....+ ....+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+
T Consensus 212 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~di 280 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQV 280 (355)
T ss_dssp HHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCce
Confidence 9999999864421111 111222333344444433 3566655 4566777889999999998765433
No 131
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.87 E-value=0.0012 Score=62.93 Aligned_cols=199 Identities=15% Similarity=0.077 Sum_probs=123.8
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHH
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~ 111 (633)
-+||++.|.. ..+-.....+++.+.++. |+.+.+ .++..++..-.+....+..+++.++|-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH
Confidence 3689999863 333334556666655553 455444 45555666555556667777888777533221111
Q ss_pred HHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEec--C-CCcchhHHHHHHH
Q 006736 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD--D-DHGRNGIAALGDK 188 (633)
Q Consensus 112 ~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d--~-~~g~~~~~~~~~~ 188 (633)
+.+...++|+|...... +.+..+..++...+..+++.|.+.|.++++++... + .......+.|++.
T Consensus 73 ---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp ---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred ---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 23455689999864321 12345667777778888888888899999999854 2 3456678889999
Q ss_pred HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 189 LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 189 ~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
+++.|+.+.. +....+..+-...++++...++++|+ +.+...+..+++++++.|+ .+...++.+
T Consensus 142 l~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 142 CKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 9999876431 11112333333445555445677655 4566678889999999997 444555544
No 132
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.84 E-value=0.00036 Score=67.45 Aligned_cols=199 Identities=10% Similarity=0.102 Sum_probs=116.0
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
...-+||+++|.. ..+-.....+++.+.++. |+.+. +.++..+.....+....++..++.+||-...+
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~- 74 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN- 74 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG-
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC-
Confidence 3467899999874 333334555555555542 45544 45566677666666677777889887764322
Q ss_pred hHHHHHH-hhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC--CCcchhHHHH
Q 006736 109 IAHLVSH-IANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAAL 185 (633)
Q Consensus 109 ~~~~va~-~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~--~~g~~~~~~~ 185 (633)
.. ... .+...++|+|......+.. . .+..+....+..++++|.+.|.++++++.... .......+.|
T Consensus 75 -~~-~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 75 -EN-IIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp -HH-HHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred -hH-HHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 22 234 5667899999876543211 1 56677777888888888888999999998543 2344567889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEE
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWI 255 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i 255 (633)
++.+++.|+.+.. .... ..+..+.... +.. .++++|+ +.....+..+++++++.|+..++-+-|
T Consensus 145 ~~~l~~~~~~~~~-~~~~-~~~~~~~~~~---l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 209 (277)
T 3e61_A 145 KYILDQQRIDYKM-LEAT-LLDNDKKFID---LIKELSIDSII-CSNDLLAINVLGIVQRYHFKVPAEIQI 209 (277)
T ss_dssp HHHHHC---CEEE-EEGG-GGGSHHHHHH---HHHHHTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCccc-eecC-CCCHHHHHHH---hhcCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999999887654 2221 1111121222 332 3567655 446677888999999999875543333
No 133
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.83 E-value=0.0036 Score=60.73 Aligned_cols=212 Identities=13% Similarity=0.012 Sum_probs=122.9
Q ss_pred EEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEec--CCCChHHHHHHHHHHHhcCceEEEc-CCchhh
Q 006736 34 NIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHD--TNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (633)
Q Consensus 34 ~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D--~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~ 109 (633)
+||++.|.. ..+-.....+++.+.++. |+.+.+ .+ +..++..-.+....++.++++++|- +.....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 72 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDI--FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVN 72 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEE--EECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSST
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHH
Confidence 689998863 333234455665555553 444443 44 5556666555666777788998774 333222
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCC-Cce-EEecCChHHHHHHHHHHHHHc-C--CcEEEEEEecCCC--cchhH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQY-PFF-VRTTQSDLYQMAAIADIVDYF-G--WRNVIALYVDDDH--GRNGI 182 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~-~~~-~r~~p~~~~~~~al~~ll~~~-~--w~~v~ii~~d~~~--g~~~~ 182 (633)
.......+...++|+|......+.....++ ..+ -.+..+....+...+++|.+. | -+++++|...... .....
T Consensus 73 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~ 152 (288)
T 1gud_A 73 LVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARR 152 (288)
T ss_dssp THHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHH
Confidence 112223445689999986543211000000 012 345677777778788877665 8 8999999864332 34567
Q ss_pred HHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeCc
Q 006736 183 AALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDW 259 (633)
Q Consensus 183 ~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 259 (633)
+.|++.+++. |+.+.....-. .+..+-...++++.+ ..+++|+ +.+...+..+++++++.|+. .+...++.+.
T Consensus 153 ~Gf~~al~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~vvGfD~ 228 (288)
T 1gud_A 153 NGATEAFKKASQIKLVASQPAD--WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLVVGTDG 228 (288)
T ss_dssp HHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred HHHHHHHHhCCCcEEEEeecCC--ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEEEEeCC
Confidence 7888999888 88765432111 223333344444433 2456544 45566778899999999985 4455666553
No 134
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.82 E-value=0.0008 Score=67.26 Aligned_cols=204 Identities=13% Similarity=0.047 Sum_probs=126.9
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
..-+||++.|.. ..+-.....+++.+.++. |+.+. +.++..++....+....++.+++.+||-......
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356899999874 334446677777666662 55554 4566667776666677778888887764222221
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC-CCcchhHHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD-DHGRNGIAALGDK 188 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~-~~g~~~~~~~~~~ 188 (633)
. .....+...++|+|....... . +.. .+..++...+..+++.|...|.++++++.... .......+.+++.
T Consensus 131 ~-~~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 202 (339)
T 3h5o_A 131 E-PFERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAA 202 (339)
T ss_dssp T-THHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHH
Confidence 1 334556678999998643221 1 122 56677888888888888888999999998653 2334566788899
Q ss_pred HhhcCcEEEE-EeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE
Q 006736 189 LAEKRCRLSH-KVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (633)
Q Consensus 189 ~~~~g~~v~~-~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 253 (633)
+++.|+.... ........+...-...++++.+ ..+++|+ ++....+..+++++++.|+..++-+
T Consensus 203 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~di 269 (339)
T 3h5o_A 203 LDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERL 269 (339)
T ss_dssp HHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCE
Confidence 9988872110 0011111222333344444433 3567665 4566778889999999998765433
No 135
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.81 E-value=0.00081 Score=66.07 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=126.2
Q ss_pred CCeEEEEEEeecC------CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc
Q 006736 30 PPVLNIGAVFALN------STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG 103 (633)
Q Consensus 30 ~~~i~IG~l~p~~------~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG 103 (633)
...-+||+++|.+ ..+-..+..+++.+.++. |+.+. +.++..+.....+....+...++.+||-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 3467899999972 223334556666555553 45544 4555555555455555666778988775
Q ss_pred CCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--Ccchh
Q 006736 104 PQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNG 181 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~ 181 (633)
....... .....+...++|+|...... .. +.+..+..+....+..+++.|.+.|-++++++..... .....
T Consensus 90 ~~~~~~~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 90 LYSLKDD-PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp SSCBTTC-HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred eCCcCCc-HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 3222222 33455667899999865433 11 2234456777778888888888889999999986543 33456
Q ss_pred HHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh-hc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEe
Q 006736 182 IAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV-SS--MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVT 257 (633)
Q Consensus 182 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i-~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~ 257 (633)
.+.|++.+++.|+.+.. . +. .+.+.....+.++ .+ ..+++|+ +.+...+..+++++++.|+..++ ...++.
T Consensus 163 ~~Gf~~~l~~~g~~~~~-~-~~--~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~vig~ 237 (305)
T 3huu_A 163 SVGFKQYCDDVKISNDC-V-VI--KSMNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQTATF 237 (305)
T ss_dssp HHHHHHHHHHTTCCCCE-E-EE--CSHHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHHHHHcCCCccc-E-Ee--cCcHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceEEEEE
Confidence 78899999999986543 1 11 1111133344444 33 3566655 45667788899999999987543 445554
Q ss_pred C
Q 006736 258 D 258 (633)
Q Consensus 258 ~ 258 (633)
+
T Consensus 238 D 238 (305)
T 3huu_A 238 N 238 (305)
T ss_dssp S
T ss_pred C
Confidence 4
No 136
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.80 E-value=0.00055 Score=68.09 Aligned_cols=205 Identities=9% Similarity=-0.051 Sum_probs=126.9
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc-CCchhh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG-PQFSVI 109 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG-~~~s~~ 109 (633)
..+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....++.+++.+||- |..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 46899999975 333345566666666652 55544 4456778877777888888889998775 444434
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHH-------cCCcEEEEEEecCC--Ccch
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDY-------FGWRNVIALYVDDD--HGRN 180 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~-------~~w~~v~ii~~d~~--~g~~ 180 (633)
.......+...++|+|......+.. . +....+..+....+..++++|.+ .|-++++++..... ....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4445566778899999875543321 1 12234556777778888887766 68889999975432 3345
Q ss_pred hHHHHHHHHhhc---C-cEEEEEee-----cCCCCChhhHHHHHHHhhc-----CCCeEEEEeeChHHHHHHHHHHHHcC
Q 006736 181 GIAALGDKLAEK---R-CRLSHKVP-----LSPKGSRNQIIDTLLTVSS-----MMSRILILHTYDIWGLEVLNAAKHLR 246 (633)
Q Consensus 181 ~~~~~~~~~~~~---g-~~v~~~~~-----~~~~~~~~~~~~~l~~i~~-----~~~~vIvl~~~~~~~~~il~~a~~~g 246 (633)
..+.|++.+++. | +.+..... .....+...-...++++.. .++++| ++.....+..+++++++.|
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~nd~~A~g~~~al~~~g 227 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAV-LSPYDGLSIGIISSLKGVG 227 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEE-ECSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEE-EECCCchHHHHHHHHHHcC
Confidence 567888888876 4 54431110 0001122223333444333 456654 4456677888999999999
Q ss_pred CCCCC
Q 006736 247 MMESG 251 (633)
Q Consensus 247 ~~~~~ 251 (633)
+..++
T Consensus 228 ~~vP~ 232 (330)
T 3uug_A 228 YGTKD 232 (330)
T ss_dssp CSSSS
T ss_pred CCCCC
Confidence 87653
No 137
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.79 E-value=0.00065 Score=65.71 Aligned_cols=195 Identities=12% Similarity=0.061 Sum_probs=127.1
Q ss_pred CCeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchh
Q 006736 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSV 108 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~ 108 (633)
..+-+||+++|.. ..+-.....+++.+.++. |+.+ +.+.++..+.....+....++.+++.+||-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA--- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---
Confidence 4567999999974 333334556665555542 4550 34456666777666667777788888877533
Q ss_pred hHHHHHHhhccCCccEEeeccC-CCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecC--CCcchhHHHH
Q 006736 109 IAHLVSHIANEFQVPLLSFAAT-DPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDD--DHGRNGIAAL 185 (633)
Q Consensus 109 ~~~~va~~~~~~~iP~Is~~a~-~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~--~~g~~~~~~~ 185 (633)
.....+...++|+|..... .+ . +.+ .+..+....+..+++.|. .|.++++++.... .......+.|
T Consensus 76 ---~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf 144 (277)
T 3hs3_A 76 ---FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAM 144 (277)
T ss_dssp ---CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHH
T ss_pred ---hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHH
Confidence 1123456779999987544 22 1 234 677788888888888877 9999999998643 2344567889
Q ss_pred HHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE
Q 006736 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 253 (633)
++.+++.|+.+... .... + .+ ...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+
T Consensus 145 ~~~l~~~g~~~~~~-~~~~--~-~~-~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 208 (277)
T 3hs3_A 145 TAEASKLKIDYLLE-ETPE--N-NP-YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDF 208 (277)
T ss_dssp HHHHHHTTCEEEEE-ECCS--S-CH-HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHCCCCCCCC-CccC--C-ch-HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCce
Confidence 99999999987654 3331 1 12 344444433 3466554 4566778889999999998755433
No 138
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.73 E-value=0.0039 Score=61.54 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=113.9
Q ss_pred CeEEEEEEeec---CC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCc
Q 006736 31 PVLNIGAVFAL---NS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQF 106 (633)
Q Consensus 31 ~~i~IG~l~p~---~~-~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~ 106 (633)
++.+||+++|. +. .+-.....+++.+.++. |+++.+. ++..+ ....+....++.+++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~-~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTD-AEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSG-GGHHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCH-HHHHHHHHHHHHcCCCEEEECCh
Confidence 45799999972 22 33334455555555542 4555443 33222 22334566677778888886432
Q ss_pred hhhHHHHHHhhccC-CccEEeeccCCCCCccCCCCceEEecCChHHHHHHH----HHHHHHcCC-cEEEEEEecC-CCcc
Q 006736 107 SVIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAI----ADIVDYFGW-RNVIALYVDD-DHGR 179 (633)
Q Consensus 107 s~~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al----~~ll~~~~w-~~v~ii~~d~-~~g~ 179 (633)
... ..+..++..+ ++|++......+ . .+++-..... ..++..+ +..+.+.|. ++|++|.... ....
T Consensus 72 ~~~-~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~d-~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FLV-EAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVFG-QNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TTH-HHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hHH-HHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEec-hHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 221 1244444443 899987643221 0 1333333333 3344443 456666676 8999998542 3344
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCC-ChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEE-EEe
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVW-IVT 257 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~-i~~ 257 (633)
...+.|++.+++.|..+.....+.... +...-....+++.+.++++|+.. ....+..+++++++.|+. +.-++ |+.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~viG~ 222 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVIGV 222 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEEEE
Confidence 567888888988876443222222111 22233344555555678876544 445566778888888776 44344 444
Q ss_pred C
Q 006736 258 D 258 (633)
Q Consensus 258 ~ 258 (633)
+
T Consensus 223 D 223 (318)
T 2fqx_A 223 D 223 (318)
T ss_dssp E
T ss_pred e
Confidence 4
No 139
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.73 E-value=0.0015 Score=67.30 Aligned_cols=211 Identities=10% Similarity=0.060 Sum_probs=126.1
Q ss_pred CCCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
....+.+||+++|.+..+......+++.+.++. |+.+.+...+... +....+...++++||-...
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~- 85 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD- 85 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT-
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC-
Confidence 445678999999866555455667777666664 4555554432211 1234556668888876322
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCC----cchhHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDH----GRNGIA 183 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~----g~~~~~ 183 (633)
...+...+...++|+|......+... ..+.+-.+..+....+..+++.|.+.|-+++++|...... .....+
T Consensus 86 --~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 86 --DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp --CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred --ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 22344566778999998765433211 1133455677788888888898888899999999865432 456778
Q ss_pred HHHHHHhhcCcEEEEEeecCC-CCChhhHHHHHHHhh-c-CCCeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 184 ALGDKLAEKRCRLSHKVPLSP-KGSRNQIIDTLLTVS-S-MMSRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~~l~~i~-~-~~~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.+++.+++.|+.......... ..+..+....+.++. . ..+++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 899999999876432211110 112222333343332 2 3566654 55667788899999999987554 4455544
No 140
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.68 E-value=0.0031 Score=63.27 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=114.9
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCceEEEc--CCc
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIG--PQF 106 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~v~aviG--~~~ 106 (633)
...+||++.|.- ..+-.....+++.+.++ .|+.+.+. ++.. ++....+....++.+++++||- +..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 457899999863 22223445555555444 25666553 3333 2343344555667777876664 433
Q ss_pred hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHH
Q 006736 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAA 184 (633)
Q Consensus 107 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~ 184 (633)
... .+...+...++|+|...... ....+ .+..++..-+...+++|...|.+++++|..... ......+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22233455799999864321 11122 344566666777778777779999999986532 23456778
Q ss_pred HHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE
Q 006736 185 LGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 253 (633)
|++.+++.|+.+.....-. .+..+-...+.++... .+++|+ +.....+..+++++++.|+..++-+
T Consensus 201 f~~al~~~gi~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~di 268 (349)
T 1jye_A 201 WHKYLTRNQIQPIAEREGD--WSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADI 268 (349)
T ss_dssp HHHHHHHTTCCCSEEEECC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHHHcCCCccccccCC--CChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcE
Confidence 9999999987543221111 1222223334444332 466655 4456678889999999998755433
No 141
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.67 E-value=0.0024 Score=63.56 Aligned_cols=200 Identities=13% Similarity=0.041 Sum_probs=124.9
Q ss_pred CeEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh
Q 006736 31 PVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI 109 (633)
Q Consensus 31 ~~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~ 109 (633)
..-+||++.|.. ..+-..+..+++.+.++. |+.+.+. ++.. +....+....++.+++++||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~--- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV--- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC---
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch---
Confidence 457899999874 333345566666666653 5555544 4444 555455556667778998886433
Q ss_pred HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHHH
Q 006736 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGD 187 (633)
Q Consensus 110 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~ 187 (633)
...+...++|+|......+. +.+..+..++...+..++++|...|-++++++..... ......+.|++
T Consensus 129 ----~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ----VGSIAPEGIPMVQLTRGELG------PGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ----TTCCC-CCSCEEEECC----------CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEECccCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 34566789999987544321 1223455677777888888888889999999986533 34456788999
Q ss_pred HHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEeeChHHHHHHHHHHHHcCCCCCC-eEEEEeC
Q 006736 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTYDIWGLEVLNAAKHLRMMESG-YVWIVTD 258 (633)
Q Consensus 188 ~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~-~~vIvl~~~~~~~~~il~~a~~~g~~~~~-~~~i~~~ 258 (633)
.+++.|+.... ... ..+..+....+.++.+.. +++|+ +.+...+..+++++++.|+..++ ...++.+
T Consensus 199 al~~~g~~~~~--~~~-~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 199 AASIYGAEVTF--HFG-HYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHTTCEEEE--EEC-CSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHCCCCEEE--ecC-CCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 99999987221 111 123334444555554433 66655 45667777899999999987553 4445544
No 142
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.60 E-value=0.00015 Score=71.28 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=125.4
Q ss_pred CCeEEEEEEeecC-Cccch-hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 30 PPVLNIGAVFALN-STIGK-VAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 30 ~~~i~IG~l~p~~-~~~g~-~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
...-+||+++|.. ..+-. .+..+++.+.++. |+.+. +.++..++....+....++..++.+||-....
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTIL--IANTGGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4567899999975 23333 6777777777662 55554 44556666666666677777788877743222
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHH
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD--HGRNGIAAL 185 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~ 185 (633)
... ....+...++|+|......+.. +.+..+..+....+..++++|.+.|.++++++..... ......+.+
T Consensus 81 ~~~--~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 81 RRI--VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp EEE--CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred ccH--HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 211 3345667799999875543211 0233456677778888888888889999999986543 334567889
Q ss_pred HHHHhhcCcEEE----EEe---ecCCCCChhhH-HHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHHHcCCCCC
Q 006736 186 GDKLAEKRCRLS----HKV---PLSPKGSRNQI-IDTLLTVSS--MMSRILILHTYDIWGLEVLNAAKHLRMMES 250 (633)
Q Consensus 186 ~~~~~~~g~~v~----~~~---~~~~~~~~~~~-~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~~~g~~~~ 250 (633)
++.+++.|+.+. ... .+. ....+ ...+.++.+ ..+++|+ +.....+..+++++++.|+..+
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 224 (301)
T 3miz_A 154 RRTTSEFGLTENDLSISLGMDGPVG---AENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIP 224 (301)
T ss_dssp HHHHHHHTCCGGGEEEEECEESSTT---SCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHcCCCCCcceEEEcCCCCcC---ccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCC
Confidence 999999887532 111 121 11111 133444433 2566654 4456678889999999998644
No 143
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.51 E-value=0.011 Score=59.13 Aligned_cols=202 Identities=12% Similarity=0.021 Sum_probs=115.3
Q ss_pred CCCCCeEEEEEEeecC---CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEc
Q 006736 27 STIPPVLNIGAVFALN---STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIG 103 (633)
Q Consensus 27 ~~~~~~i~IG~l~p~~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG 103 (633)
....++.+||+++|-. ..+-.....|++.+.++. |.++++.+.++..+.....+....++++++.+||+
T Consensus 21 ~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~--------G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~ 92 (356)
T 3s99_A 21 SMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEAL--------GDKVETTFLENVAEGADAERSIKRIARAGNKLIFT 92 (356)
T ss_dssp -----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHH--------TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE
T ss_pred cccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHh--------CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3456789999999742 233344566666666554 22356666666555545566778888889999998
Q ss_pred CCchhhHHHHHHhhccC-CccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH-HH-cCCcEEEEEEecC-CCcc
Q 006736 104 PQFSVIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV-DY-FGWRNVIALYVDD-DHGR 179 (633)
Q Consensus 104 ~~~s~~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll-~~-~~w~~v~ii~~d~-~~g~ 179 (633)
.... ...++..++..+ ++|++...... . .+++...... ..++..++-.+ .. -+-++|++|.... ....
T Consensus 93 ~g~~-~~~~~~~vA~~~Pdv~fv~id~~~---~---~~Nv~sv~~~-~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~ 164 (356)
T 3s99_A 93 TSFG-YMDPTVKVAKKFPDVKFEHATGYK---T---ADNMSAYNAR-FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVV 164 (356)
T ss_dssp CSGG-GHHHHHHHHTTCTTSEEEEESCCC---C---BTTEEEEEEC-HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHH
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEEEeccc---c---CCcEEEEEec-hhHHHHHHHHHHHHhcCCCEEEEECCCccHHHH
Confidence 6433 334456666665 78888653321 1 1343333332 33444444432 11 1357999998543 2223
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCC
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~ 247 (633)
.+...|+..++..+..+.....+.-. .+...-....+.+.+.++|+|+...... .++++|++.|.
T Consensus 165 ~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 165 QGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 45677888887766544333223211 1223334556666667899888776654 57899998773
No 144
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.49 E-value=0.016 Score=56.39 Aligned_cols=195 Identities=10% Similarity=0.008 Sum_probs=108.7
Q ss_pred CeEEEEEEeec--CC-ccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 31 PVLNIGAVFAL--NS-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 31 ~~i~IG~l~p~--~~-~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
.+.+||+++|. +. .+-.....+++.+.++. |+++. +.++..+.....+....++.+++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 45789999973 22 44445566666665552 45543 34444444444455667777899999975433
Q ss_pred hhHHHHHHhhccC-CccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHc-CCcEEEEEEecCCCcchhHHHH
Q 006736 108 VIAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYF-GWRNVIALYVDDDHGRNGIAAL 185 (633)
Q Consensus 108 ~~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~-~w~~v~ii~~d~~~g~~~~~~~ 185 (633)
. ...+..++..+ ++|++......+ .+++-........-+.....++.++ +-++|++|...... . ..+.|
T Consensus 74 ~-~~~~~~~~~~~p~~p~v~id~~~~------~~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~Gf 144 (296)
T 2hqb_A 74 F-AEYFSTIHNQYPDVHFVSFNGEVK------GENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEGF 144 (296)
T ss_dssp H-HHHHHTTTTSCTTSEEEEESCCCC------SSSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHHH
T ss_pred H-HHHHHHHHHHCCCCEEEEEecCcC------CCCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHHH
Confidence 2 22344555544 889987643211 1233333344443333333334342 56899999854322 2 78889
Q ss_pred HHHHhhcCcEEEEEeecCCCC-ChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcC
Q 006736 186 GDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLR 246 (633)
Q Consensus 186 ~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g 246 (633)
++.+++.|.. .....+.... +...-....+++.+.++++|+. .....+..+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 9999988875 3222222111 2223334455565567887654 44445666788888877
No 145
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.34 E-value=0.00013 Score=67.27 Aligned_cols=76 Identities=9% Similarity=0.008 Sum_probs=64.5
Q ss_pred CCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecc------ccceeeeccce
Q 006736 492 TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTE------RTKMVDFTQPY 565 (633)
Q Consensus 492 ~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~------r~~~~~fs~p~ 565 (633)
+.+++|++--|.+.+. |++ +++..- .+|.+++..|++|++|+++++++.+++ |...++|+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~m------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHM------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEEC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEc------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4578899888877773 755 666662 279999999999999999999999999 99999999999
Q ss_pred eecceEEEEecCC
Q 006736 566 IESGLVVVAPIKK 578 (633)
Q Consensus 566 ~~~~~~~lv~~~~ 578 (633)
+.....++++++.
T Consensus 96 Yv~~h~li~~~~~ 108 (231)
T 2ozz_A 96 YVGEHQLICRKGE 108 (231)
T ss_dssp SSCCEEEEEETTC
T ss_pred cccCeEEEEeCCC
Confidence 9877788888776
No 146
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=97.13 E-value=0.044 Score=54.11 Aligned_cols=217 Identities=12% Similarity=0.035 Sum_probs=124.7
Q ss_pred CCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCC---CC--cEEEEEEecCCCCh-----HHHHHHHHHHHhc-Cc
Q 006736 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAIL---GG--TKLKLTVHDTNYSR-----FLGMVEALTLLEN-ET 98 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il---~g--~~l~~~~~D~~~~~-----~~a~~~~~~li~~-~v 98 (633)
..+.+||++.+..+. .....++++..+++.|..++.. .| ..+.+++..+-.++ ..+++...++... ++
T Consensus 10 ~~~~~igi~t~t~s~-se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLSE-NKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTTT-CHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcCC-CHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 457999999776432 3567888899999988744321 01 22334444422222 2345555566555 77
Q ss_pred eEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCcc--CCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCC
Q 006736 99 VAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS--LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDD 176 (633)
Q Consensus 99 ~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~--~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~ 176 (633)
.+||..............+.+.+++.|-..+....... ..+..+ .+......-+...++.|.+.|-+++++|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di-~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVDV-NLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSE-EEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCce-EEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 77776433322233345566556655443332111000 001122 455566666666778899999999999986542
Q ss_pred --C--cchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHH-hh--------cCCCeEEEEeeChHHHHHHHHHHH
Q 006736 177 --H--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLT-VS--------SMMSRILILHTYDIWGLEVLNAAK 243 (633)
Q Consensus 177 --~--g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~-i~--------~~~~~vIvl~~~~~~~~~il~~a~ 243 (633)
+ .....+.+++.++++|+.+.......+ .....+.. .++ +. +.+...-|.+++...+..++++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~~~-a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ikal~ 245 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDKNK-VKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTKAL 245 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHHHH-HHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHHHH-HHHHHhccccchhhccCCCcEEEECCHHHHHHHHHHHH
Confidence 2 233677899999999998765432221 12222222 222 21 223323566777888899999999
Q ss_pred HcCCCCC
Q 006736 244 HLRMMES 250 (633)
Q Consensus 244 ~~g~~~~ 250 (633)
+.|+..|
T Consensus 246 e~Gi~VP 252 (371)
T 3qi7_A 246 ELKYIVA 252 (371)
T ss_dssp HHCCBBC
T ss_pred HcCCccC
Confidence 9997544
No 147
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=97.03 E-value=0.023 Score=57.23 Aligned_cols=212 Identities=12% Similarity=0.018 Sum_probs=119.2
Q ss_pred CCeEEEEEEeecCCc--cchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCch
Q 006736 30 PPVLNIGAVFALNST--IGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFS 107 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~--~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s 107 (633)
...-+||+++|.... ....+...+..++++.=+ |+.+.+...+...+. .-.+....+...++.+||-....
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCC
Confidence 345789999997421 112233333334444322 566666655433221 12233455566677766642222
Q ss_pred hhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEec-------------
Q 006736 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVD------------- 174 (633)
Q Consensus 108 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d------------- 174 (633)
... .....+...++|+|......+ . +.+-.+..+....+..+++.|.+.|-+++++|...
T Consensus 139 ~~~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 139 KGD-PHIDAIRARGLPAVIADQPAR---E---EGMPFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp TTC-HHHHHHHHHTCCEEEESSCCS---C---TTCCEEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred CCh-HHHHHHHHCCCCEEEECCccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 222 223445667999998654221 1 12233566777778888888888999999999832
Q ss_pred ------CCCcchhHHHHHHHHhhcCcEEEE---EeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHHHHHH
Q 006736 175 ------DDHGRNGIAALGDKLAEKRCRLSH---KVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVLNAAK 243 (633)
Q Consensus 175 ------~~~g~~~~~~~~~~~~~~g~~v~~---~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il~~a~ 243 (633)
........+.|++.+++.|+.+.. ...-. .+..+-...++++.+ ..+++|+. .+...+..++++++
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~ 288 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWI--NNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLK 288 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESS--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHH
Confidence 223345678899999999875321 11111 122333334444433 35666554 45667778999999
Q ss_pred HcCCCCCC-eEEEEeC
Q 006736 244 HLRMMESG-YVWIVTD 258 (633)
Q Consensus 244 ~~g~~~~~-~~~i~~~ 258 (633)
+.|+..++ ...++.+
T Consensus 289 ~~G~~vP~disvigfD 304 (366)
T 3h5t_A 289 SVGKSAPADLSLTGFD 304 (366)
T ss_dssp HTTCCTTTTCEEEEEE
T ss_pred HcCCCCCCceEEEEEC
Confidence 99987553 3344433
No 148
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.90 E-value=0.019 Score=53.68 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCceEEEcCCchhhH--------HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHH
Q 006736 87 MVEALTLLENETVAIIGPQFSVIA--------HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIAD 158 (633)
Q Consensus 87 ~~~~~~li~~~v~aviG~~~s~~~--------~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ 158 (633)
.+++..|...++.+|+-+-++.+. .....+.+..++|+++. +.++++
T Consensus 56 ~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~ 110 (240)
T 3ixl_A 56 VDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLN 110 (240)
T ss_dssp HHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHH
T ss_pred HHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHH
Confidence 344555555689988875444343 23345555678999862 577888
Q ss_pred HHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHH-h-hcCCCeEEEEe
Q 006736 159 IVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLT-V-SSMMSRILILH 229 (633)
Q Consensus 159 ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~-i-~~~~~~vIvl~ 229 (633)
.++..|-+||+++.+ |.....+.+++.+++.|+++......... .+...+.+.+++ + ...++|.||+.
T Consensus 111 al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~ 187 (240)
T 3ixl_A 111 GLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLS 187 (240)
T ss_dssp HHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEE
T ss_pred HHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 888899999999974 77777888999999999998765543311 234567777777 7 66789999998
Q ss_pred eChHHHHHHHHHHH
Q 006736 230 TYDIWGLEVLNAAK 243 (633)
Q Consensus 230 ~~~~~~~~il~~a~ 243 (633)
|..-....++.+++
T Consensus 188 CT~l~~l~~i~~le 201 (240)
T 3ixl_A 188 SGGLLTLDAIPEVE 201 (240)
T ss_dssp CTTSCCTTHHHHHH
T ss_pred CCCCchhhhHHHHH
Confidence 87644443444433
No 149
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=95.12 E-value=0.33 Score=46.17 Aligned_cols=124 Identities=12% Similarity=0.069 Sum_probs=79.4
Q ss_pred HHHHHHhcCceEEEcCCchhhHH--------HHHHhhccC-----CccEEeeccCCCCCccCCCCceEEecCChHHHHHH
Q 006736 89 EALTLLENETVAIIGPQFSVIAH--------LVSHIANEF-----QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAA 155 (633)
Q Consensus 89 ~~~~li~~~v~aviG~~~s~~~~--------~va~~~~~~-----~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~a 155 (633)
++..+...++.+|+-+.++.... ....+.+.. ++|+++. ..+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 44455555888888755554321 123344444 7888862 355
Q ss_pred HHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCC-------CCChhhHHHHHHHhhcCCCeEEEE
Q 006736 156 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSP-------KGSRNQIIDTLLTVSSMMSRILIL 228 (633)
Q Consensus 156 l~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-------~~~~~~~~~~l~~i~~~~~~vIvl 228 (633)
+++.++..|-+||+++. .|.......+++.+++.|+++........ ..+...+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 66666777889999996 45555666888999999998865544332 123345677777776678999999
Q ss_pred e-eChHHHHHHHH
Q 006736 229 H-TYDIWGLEVLN 240 (633)
Q Consensus 229 ~-~~~~~~~~il~ 240 (633)
. |..-....+..
T Consensus 214 g~CT~l~~~~~~~ 226 (273)
T 2xed_A 214 SCAVQMPSLPLVE 226 (273)
T ss_dssp ESSSSSCCTTHHH
T ss_pred cCCCCcchHHhHH
Confidence 8 87644333333
No 150
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=94.89 E-value=0.021 Score=55.89 Aligned_cols=100 Identities=12% Similarity=0.009 Sum_probs=65.1
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .+.|+.+... -.++++.|++++|.+ ++++.. .+|.+++..|.+|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~~~--------~~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLKSI--------WEPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHHHH--------HHHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHHHH--------HHHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3689999986 6666654331 248999999999965 666643 579999999999999999755
Q ss_pred -eEeecc--ccceeeecccee-----ecceEEEEecCCCCcCccccc
Q 006736 549 -FAITTE--RTKMVDFTQPYI-----ESGLVVVAPIKKLNSNAWAFL 587 (633)
Q Consensus 549 -~~~~~~--r~~~~~fs~p~~-----~~~~~~lv~~~~~~~~~~~~l 587 (633)
.++... |.....|+.++. .....++|++++ +......|
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds-~i~sl~DL 110 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDS-KIDSLEDM 110 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTC-SCCSHHHH
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCC-CCCCHHHH
Confidence 333333 333445544321 112477888776 33333344
No 151
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=94.22 E-value=0.036 Score=54.53 Aligned_cols=93 Identities=11% Similarity=-0.000 Sum_probs=61.2
Q ss_pred CCceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEe
Q 006736 468 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 547 (633)
Q Consensus 468 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 547 (633)
+.++|++|+.+ .+.|..+.. .--+|++.|++++|.+ ++++.. .+|.+++..|.+|++|+++.
T Consensus 12 ~~~~l~~Gv~p--~~~~~~~~~--------~~~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQNLKP--------QWTPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEECC--SSCHHHHHH--------HHHHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEec--CCCHHHHHH--------HHHHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEE
Confidence 45789999985 554443322 2237899999999965 777653 57999999999999999975
Q ss_pred e-eEeeccc--cceeeecccee-----ecceEEEEecCC
Q 006736 548 D-FAITTER--TKMVDFTQPYI-----ESGLVVVAPIKK 578 (633)
Q Consensus 548 ~-~~~~~~r--~~~~~fs~p~~-----~~~~~~lv~~~~ 578 (633)
+ .++...| .....|..|+. .....++|++++
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds 112 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDS 112 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTC
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCC
Confidence 3 4555443 33444554321 112477888776
No 152
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=92.31 E-value=1.6 Score=40.00 Aligned_cols=79 Identities=5% Similarity=-0.100 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCC-------CChhhHHHHHHHhhcC--CC
Q 006736 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-------GSRNQIIDTLLTVSSM--MS 223 (633)
Q Consensus 153 ~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-------~~~~~~~~~l~~i~~~--~~ 223 (633)
..++++.++..|-+||+++. .|+......+++.+++.|+++......... .+...+...++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 35566666777889999996 455566668888999999987655443321 1234466666666666 78
Q ss_pred eEEEEeeChHH
Q 006736 224 RILILHTYDIW 234 (633)
Q Consensus 224 ~vIvl~~~~~~ 234 (633)
|+||+.|..-.
T Consensus 173 daIvLgCT~l~ 183 (223)
T 2dgd_A 173 DAVYIACTALS 183 (223)
T ss_dssp SEEEECCTTSC
T ss_pred CEEEEeCCccc
Confidence 88888776543
No 153
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=91.53 E-value=1.2 Score=41.11 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=47.4
Q ss_pred HHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcE
Q 006736 88 VEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRN 167 (633)
Q Consensus 88 ~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~ 167 (633)
+.+..+...++.+|+-+-++.+ ..+..+-+..++|+|+. ..+.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 4455565569999888766665 45555666778888852 122333333336778
Q ss_pred EEEEEecCCCcchhHHHHHHHHhhcCcEE
Q 006736 168 VIALYVDDDHGRNGIAALGDKLAEKRCRL 196 (633)
Q Consensus 168 v~ii~~d~~~g~~~~~~~~~~~~~~g~~v 196 (633)
|+++.+..-. ....+++.+++.|+++
T Consensus 119 igvlaT~~T~---~~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 119 AGLLATTGTI---VSGVYEKEFSKYGVEI 144 (228)
T ss_dssp EEEECCHHHH---HHTHHHHHHHHTTCEE
T ss_pred EEEEecHHHh---hhhHHHHHHHHCCCeE
Confidence 8888644211 1134556666777765
No 154
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=90.99 E-value=1.9 Score=39.65 Aligned_cols=163 Identities=12% Similarity=0.085 Sum_probs=84.0
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC----Ch---H----HHHHHHHHHHhcCce
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY----SR---F----LGMVEALTLLENETV 99 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~----~~---~----~a~~~~~~li~~~v~ 99 (633)
..+||++.|.+ ... ... ++...++.+. +|+..+.+.....+. +. . ...+.+..+...++.
T Consensus 6 ~~~ig~i~p~~~~~~---~e~--~~~~~~~~~~---~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d 77 (228)
T 2eq5_A 6 KYTIGLIRVITLEDK---EIL--NLHGRIIESA---FPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVD 77 (228)
T ss_dssp CEEEEEEESSCCCCH---HHH--THHHHHHHHH---CTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ceEEEEEeccCccCH---HHH--HHHHHHHHhh---CCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCC
Confidence 57899999987 322 111 1112222222 266666664332221 11 1 112234445556888
Q ss_pred EEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcc
Q 006736 100 AIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGR 179 (633)
Q Consensus 100 aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~ 179 (633)
+|+-+-++. ..+..+-+..++|+++.. .+.++.....+ ++|+++.+.....
T Consensus 78 ~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rigVlat~~t~~- 128 (228)
T 2eq5_A 78 AIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVGVLNLTEETP- 128 (228)
T ss_dssp EEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEEEECSSSCCC-
T ss_pred EEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEEEEecCcccH-
Confidence 888755544 444455566789988631 11122222356 8899888653321
Q ss_pred hhHHHHHHHH-hhcCcEEEEEe-----ecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHH
Q 006736 180 NGIAALGDKL-AEKRCRLSHKV-----PLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW 234 (633)
Q Consensus 180 ~~~~~~~~~~-~~~g~~v~~~~-----~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~ 234 (633)
..+++.+ ++.|..+.... .+........+...++.+.+.++|+||+.|..-.
T Consensus 129 ---~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 129 ---KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp ---HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred ---HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 3467777 77776642110 0000001223455566666668999999887644
No 155
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=90.26 E-value=6.3 Score=38.18 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=79.0
Q ss_pred EEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHHH
Q 006736 34 NIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLV 113 (633)
Q Consensus 34 ~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~v 113 (633)
+||++.............|++.++++.|- ..++.++...+-.++..+.+.+.+++++++.+|+.... ..+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d-~~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAG-GTGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECG-GGHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCC-CCchHH
Confidence 78888765433345568899999988752 34555544333346788888899999989999887443 334444
Q ss_pred HHhhcc-----CCccEEeeccCCCCCccC---CCCceEEecCChHHHHHHHHHHHHHcCCc
Q 006736 114 SHIANE-----FQVPLLSFAATDPSLSSL---QYPFFVRTTQSDLYQMAAIADIVDYFGWR 166 (633)
Q Consensus 114 a~~~~~-----~~iP~Is~~a~~~~ls~~---~~~~~~r~~p~~~~~~~al~~ll~~~~w~ 166 (633)
...+.+ .++.+|.+.........- ..|.+-.+..+-...+...++.+..=.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 445555 678888876533222100 23556666666666677777766554553
No 156
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=89.37 E-value=2.3 Score=42.66 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCcc--hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-
Q 006736 155 AIADIVDYFGWRNVIALYVDDDHGR--NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY- 231 (633)
Q Consensus 155 al~~ll~~~~w~~v~ii~~d~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~- 231 (633)
.+.++++.++.+++.||++...... ...+.+.+.+++.|+++.....+..+.+.+.+...++.+++.++|+||-.+.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3667777888899998886655544 4788999999999988754444555566778888888899899999997755
Q ss_pred -hHHHHHHHHHH
Q 006736 232 -DIWGLEVLNAA 242 (633)
Q Consensus 232 -~~~~~~il~~a 242 (633)
.-++..++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 46777777665
No 157
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=89.34 E-value=4.5 Score=39.99 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=67.0
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
=+||++.......-.....|+..++++.| |..++.+.+..+-.|+..+.+.+..|+++++.+|+...... .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 47899987653333345788999998876 45677777666557999999999999999999998765543 4
Q ss_pred HHHhhccCCccEEeeccCC
Q 006736 113 VSHIANEFQVPLLSFAATD 131 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~ 131 (633)
+...+.+.++.+|.+....
T Consensus 221 v~~aa~e~Gv~vIG~D~dq 239 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASDM 239 (356)
T ss_dssp HHHHHHHTTCEEEEEESCC
T ss_pred HHHHHHHcCCEEEEEcCch
Confidence 4566778899888875553
No 158
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=88.99 E-value=0.48 Score=45.82 Aligned_cols=79 Identities=9% Similarity=-0.022 Sum_probs=58.0
Q ss_pred CCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee-eEeecccc---ceeeeccceee
Q 006736 492 TDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD-FAITTERT---KMVDFTQPYIE 567 (633)
Q Consensus 492 ~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~-~~~~~~r~---~~~~fs~p~~~ 567 (633)
+..+.|+.+.+-+-+.++.|++ +++++. .....++..|.+|++|+++++ ......|. ....++.++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 3457799999999999999955 677652 334589999999999999877 23333343 35666667777
Q ss_pred cceEEEEecCC
Q 006736 568 SGLVVVAPIKK 578 (633)
Q Consensus 568 ~~~~~lv~~~~ 578 (633)
.+..+++++++
T Consensus 86 ~~~~l~~~~~s 96 (302)
T 3ix1_A 86 PLNHVMFLAEQ 96 (302)
T ss_dssp CCEEEEEEGGG
T ss_pred CCEEEEEECCC
Confidence 78889998765
No 159
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=88.55 E-value=1.9 Score=43.16 Aligned_cols=90 Identities=9% Similarity=0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 232 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~- 232 (633)
..+.++++++|.+|+.||++.........+.+.+.+++.|+.+.....+.++.+...+.+.++.+++.++|+||-.+.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 4567778888999999998764333335788999999999987654455555677888888888888899999987655
Q ss_pred -HHHHHHHHHHH
Q 006736 233 -IWGLEVLNAAK 243 (633)
Q Consensus 233 -~~~~~il~~a~ 243 (633)
-++.+++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 57777776555
No 160
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=86.35 E-value=10 Score=36.12 Aligned_cols=122 Identities=7% Similarity=-0.093 Sum_probs=75.9
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
=+||++....... ...|++.++++.| +. ++.++...+-.++..+.+++.+++++++.+|+.. +...+..
T Consensus 127 ~~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~D~~a~G 195 (296)
T 2hqb_A 127 HKVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPA-GDGYHVP 195 (296)
T ss_dssp SEEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECC-CTTTHHH
T ss_pred CeEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEEC-CCCCCHH
Confidence 3788887654221 5788888888865 23 4444443333467788888899998899999974 3444455
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcE
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRN 167 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~ 167 (633)
+...+.+.++.+|.+......+ ...|.+-.+..+-...+...++.+..-.|+.
T Consensus 196 v~~a~~e~Gv~viG~D~~~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 196 VVEAIKDQGDFAIGYVGDQADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHHTCEEEEEESCCSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHHcCCEEEEEecchhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 5566777788888876522111 1124565555555556666666554445653
No 161
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=85.59 E-value=19 Score=31.92 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=99.7
Q ss_pred eEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHH
Q 006736 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAH 111 (633)
Q Consensus 32 ~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~ 111 (633)
..+|.++.|.+ .+..-++-...+.+ ..+.+.. .+-.+++..+.++ .+++.+||. ...++.
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIIS--RGgta~ 63 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIIS--RGATSD 63 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEE--EHHHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEE--CChHHH
Confidence 35788888874 34444444444432 2444433 3467788888888 889999996 333333
Q ss_pred HHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhh
Q 006736 112 LVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAE 191 (633)
Q Consensus 112 ~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~ 191 (633)
.+. +..++|+|.. ..+..+..+++...-+ ++ ++++++...+.. ...+.+.+.+
T Consensus 64 ~lr---~~~~iPVV~I------------------~~s~~Dil~al~~a~~-~~-~kIavvg~~~~~--~~~~~~~~ll-- 116 (196)
T 2q5c_A 64 YIK---KSVSIPSISI------------------KVTRFDTMRAVYNAKR-FG-NELALIAYKHSI--VDKHEIEAML-- 116 (196)
T ss_dssp HHH---TTCSSCEEEE------------------CCCHHHHHHHHHHHGG-GC-SEEEEEEESSCS--SCHHHHHHHH--
T ss_pred HHH---HhCCCCEEEE------------------cCCHhHHHHHHHHHHh-hC-CcEEEEeCcchh--hHHHHHHHHh--
Confidence 333 3467999973 1334555666666644 33 489998865432 1245555555
Q ss_pred cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCC
Q 006736 192 KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 192 ~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~ 248 (633)
|+++... .+. +..+....++++++.+.++||-.+.. .+.|++.|+.
T Consensus 117 -~~~i~~~-~~~---~~~e~~~~i~~l~~~G~~vvVG~~~~------~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 -GVKIKEF-LFS---SEDEITTLISKVKTENIKIVVSGKTV------TDEAIKQGLY 162 (196)
T ss_dssp -TCEEEEE-EEC---SGGGHHHHHHHHHHTTCCEEEECHHH------HHHHHHTTCE
T ss_pred -CCceEEE-EeC---CHHHHHHHHHHHHHCCCeEEECCHHH------HHHHHHcCCc
Confidence 5666543 232 56789999999999999998765332 5667888874
No 162
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=84.65 E-value=2.3 Score=42.64 Aligned_cols=101 Identities=11% Similarity=0.003 Sum_probs=69.9
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~ 219 (633)
|+-+...+... ..+.+++++++.+++.+|++.........+.+.+.+++.|+++.....+.++.+.+.+...++.++
T Consensus 9 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~ 85 (386)
T 1rrm_A 9 NETAWFGRGAV---GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQ 85 (386)
T ss_dssp CSEEEESTTGG---GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH
Confidence 34344444432 335667777888999888855433334678888999889988764444555567778888888888
Q ss_pred cCCCeEEEEeeC--hHHHHHHHHHHH
Q 006736 220 SMMSRILILHTY--DIWGLEVLNAAK 243 (633)
Q Consensus 220 ~~~~~vIvl~~~--~~~~~~il~~a~ 243 (633)
+.++|+||-.+. .-++..++....
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 86 NSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp HHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred hcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 889999997755 467777776655
No 163
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=83.87 E-value=5.7 Score=36.26 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHhcCceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEE
Q 006736 92 TLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIAL 171 (633)
Q Consensus 92 ~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii 171 (633)
.+...|+.+|+-+-++.+.. +..+-+..++|+|+. ..+.++-+...+-++|+++
T Consensus 68 ~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvl 121 (226)
T 2zsk_A 68 ALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLL 121 (226)
T ss_dssp HHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEE
Confidence 34445899888766665433 445556668888852 2334444444578899999
Q ss_pred EecCCCcchhHHHHHHHHhhcCcEEE
Q 006736 172 YVDDDHGRNGIAALGDKLAEKRCRLS 197 (633)
Q Consensus 172 ~~d~~~g~~~~~~~~~~~~~~g~~v~ 197 (633)
.+. +... ...+++.+++.|+++.
T Consensus 122 aT~--~T~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 122 GTK--TTMT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp SST--TTTS-CHHHHHHHHTTTCEEE
T ss_pred eCH--HHHh-hhHHHHHHHHCCCEEE
Confidence 743 2222 1346777777888764
No 164
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=83.78 E-value=4.7 Score=40.71 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCcc-hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--
Q 006736 155 AIADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-- 231 (633)
Q Consensus 155 al~~ll~~~~w~~v~ii~~d~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-- 231 (633)
.+.++++.++.+++.||+++..... ...+.+.+.+++.|+++.......++.+...+...++.+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 3566777788899998885333222 2578888899888988754333444456677888888888899999997755
Q ss_pred hHHHHHHHHHH
Q 006736 232 DIWGLEVLNAA 242 (633)
Q Consensus 232 ~~~~~~il~~a 242 (633)
.-++.+++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45777766654
No 165
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=83.42 E-value=9.1 Score=37.99 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=68.8
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcc-hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHh
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTV 218 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i 218 (633)
|+-+...+... ..+.++++.++ +++.+|++...... ...+.+.+.+++.|+++.....+..+.+.+.+.+.++.+
T Consensus 19 p~~i~~G~g~~---~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~ 94 (371)
T 1o2d_A 19 PTDVFFGEKIL---EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY 94 (371)
T ss_dssp CCEEEESTTHH---HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH
Confidence 44444444432 33556677778 89999986644332 357888899998898865444455556777888888889
Q ss_pred hcCCCeEEEEeeCh--HHHHHHHHHHH
Q 006736 219 SSMMSRILILHTYD--IWGLEVLNAAK 243 (633)
Q Consensus 219 ~~~~~~vIvl~~~~--~~~~~il~~a~ 243 (633)
++.++|+||-.+.+ -++..++....
T Consensus 95 ~~~~~d~IIavGGGsv~D~AK~iA~~~ 121 (371)
T 1o2d_A 95 RNDSFDFVVGLGGGSPMDFAKAVAVLL 121 (371)
T ss_dssp TTSCCSEEEEEESHHHHHHHHHHHHHT
T ss_pred HhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence 88899999977554 57777766553
No 166
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=83.02 E-value=3.1 Score=40.69 Aligned_cols=75 Identities=16% Similarity=0.026 Sum_probs=53.2
Q ss_pred HHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEee----ccccceeeeccceeecceEEEEecCC-CC
Q 006736 506 VLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAIT----TERTKMVDFTQPYIESGLVVVAPIKK-LN 580 (633)
Q Consensus 506 ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~----~~r~~~~~fs~p~~~~~~~~lv~~~~-~~ 580 (633)
+.++.|++ +++++. .+|..++..|.+|++|+++++.... .++.....++.++...+..+++++++ ..
T Consensus 58 ~~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (346)
T 3qsl_A 58 FFKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPG 129 (346)
T ss_dssp HHHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTT
T ss_pred chHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccC
Confidence 34677855 666653 5799999999999999998775543 45666777777777778888898765 23
Q ss_pred cCcccccc
Q 006736 581 SNAWAFLN 588 (633)
Q Consensus 581 ~~~~~~l~ 588 (633)
.+....|+
T Consensus 130 i~s~~DL~ 137 (346)
T 3qsl_A 130 YKGPADLK 137 (346)
T ss_dssp CCSGGGGT
T ss_pred CCChHHcC
Confidence 34444444
No 167
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=82.86 E-value=14 Score=28.29 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=64.8
Q ss_pred eEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-
Q 006736 142 FVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS- 220 (633)
Q Consensus 142 ~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~- 220 (633)
+|-+..++.....-++.-+++.|. ++.++|+|.+. .....-.+.+++.|+.+-.. .+..+++..+++|-+
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde--krrrerleefekqgvdvrtv------edkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KRRRERLEEFEKQGVDVRTV------EDKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HHHHHHHHHHHTTTCEEEEC------CSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HHHHHHHHHHHHcCCceeee------ccHHHHHHHHHHHHHh
Confidence 344555666666777777777665 67789977542 22223335677889887633 256788888877754
Q ss_pred -CCCeEEEEee--ChHHHHHHHHHHHHcCC
Q 006736 221 -MMSRILILHT--YDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 221 -~~~~vIvl~~--~~~~~~~il~~a~~~g~ 247 (633)
..-|++++.. +.+-...++.+|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 4667776654 34678899999999885
No 168
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=82.72 E-value=3.6 Score=40.12 Aligned_cols=100 Identities=10% Similarity=-0.009 Sum_probs=66.6
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHH----CCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccE
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLEL----LPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDA 544 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 544 (633)
.++|++++.. . .+.+..+...|.+.+.+. .|.+ ++..+. +...+.+..+.+|++|+
T Consensus 31 ~~~i~i~~g~-----------~-gG~~~~~~~~la~~l~~~~~~~~g~~--v~v~~~------~g~~~~i~~l~~g~~D~ 90 (327)
T 4ddd_A 31 REYILIGTGS-----------M-TGVYYPIGGSICRFIASDYGKDNKII--CSISST------TGSVYNLNSIRYSNMDI 90 (327)
T ss_dssp CEEEEEECCC-----------T-TSSHHHHHHHHHHHHHHHHGGGTSEE--EEEECC------CCHHHHHHHHHTTSCSE
T ss_pred CeEEEEEeCC-----------C-CCHHHHHHHHHHHHHHhccCCCCCeE--EEEEec------CcHHHHHHHHHcCCCcE
Confidence 3678888752 1 355667777888888887 6744 666552 45788899999999999
Q ss_pred EEeeeEeec---------c---ccceeeeccceeecceEEEEecCCCCcCccccccC
Q 006736 545 AVGDFAITT---------E---RTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLNP 589 (633)
Q Consensus 545 ~~~~~~~~~---------~---r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~p 589 (633)
++....... + ..+.+.+..+++.....+++++++ ..+....|++
T Consensus 91 ~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~~~~~lvv~~ds-~i~sl~DL~g 146 (327)
T 4ddd_A 91 SIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHKEYLTIVVKKSS-NISVIDDIKG 146 (327)
T ss_dssp EEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEEEEEEEEEETTS-SCCSGGGGTT
T ss_pred EEECcHHHHHHHhCcCcccccCCCcchhehhccCCccEEEEEECCC-CCCCHHHhCC
Confidence 987654321 1 123455556777888899998876 3344445554
No 169
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=82.72 E-value=1.4 Score=42.41 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=44.8
Q ss_pred HHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeeccccc------eeeeccceeecceEEEEecC
Q 006736 505 AVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTK------MVDFTQPYIESGLVVVAPIK 577 (633)
Q Consensus 505 ~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~------~~~fs~p~~~~~~~~lv~~~ 577 (633)
.+.+++ |.+ ++++.. .++..++..|.+|++|+++.+.... .|.+ .+.++.++...+..++++++
T Consensus 24 ~~~~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 94 (308)
T 2x26_A 24 LLEKRYPESK--ISWVEF------PAGPQMLEALNVGSIDLGSTGDIPP-IFAQAAGADLVYVGVEPPKPKAEVILVAEN 94 (308)
T ss_dssp HHHHHCTTSE--EEEEEC------SSHHHHHHHHHHTSCSEEEECSHHH-HHHHHTTCCEEEEEEECCCGGGEEEEEETT
T ss_pred hHhHhcCCCc--eEEEEC------CCcHHHHHHHHCCCCCEEcccCcHH-HHHHhcCCCeEEEEEecCCCCceEEEEeCC
Confidence 356676 754 666653 3458999999999999997654322 2221 45667777777889999876
Q ss_pred C
Q 006736 578 K 578 (633)
Q Consensus 578 ~ 578 (633)
+
T Consensus 95 ~ 95 (308)
T 2x26_A 95 S 95 (308)
T ss_dssp C
T ss_pred C
Confidence 5
No 170
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=81.66 E-value=7.1 Score=36.72 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 88 VEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 88 ~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
+.+..+.+.++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 56 ~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 56 EMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 334445556999888866666655666677778999997
No 171
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=81.57 E-value=7.1 Score=36.86 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 89 EALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 89 ~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
.+..+.+.++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 33445555999888866666655566676778999997
No 172
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=80.08 E-value=1.2 Score=44.00 Aligned_cols=79 Identities=6% Similarity=-0.099 Sum_probs=52.0
Q ss_pred HHHHHHHHCCCccceEE--EeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEee----ccccceeeeccceeecceEEEEe
Q 006736 502 VFTAVLELLPYAVPYKL--VPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAIT----TERTKMVDFTQPYIESGLVVVAP 575 (633)
Q Consensus 502 l~~~ia~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~----~~r~~~~~fs~p~~~~~~~~lv~ 575 (633)
+.+.+++. |++ +++ ... .+++..++..|.+|++|+++.+.... .++.....++.++...+..++++
T Consensus 35 l~~~~~~~-G~~--v~~~~~~~-----~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~ 106 (348)
T 3uif_A 35 FPEELRKQ-GIK--VEWVPAAM-----ASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVP 106 (348)
T ss_dssp HHHHHHHT-TEE--EEEEEECT-----TCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEE
T ss_pred HHHHHHhc-CCe--EEEEeccc-----CCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEE
Confidence 44566665 844 666 432 13467799999999999998655433 45556666777777888899998
Q ss_pred cCCCCcCccccccC
Q 006736 576 IKKLNSNAWAFLNP 589 (633)
Q Consensus 576 ~~~~~~~~~~~l~p 589 (633)
+++ .......|+.
T Consensus 107 ~~s-~i~s~~DLkG 119 (348)
T 3uif_A 107 KNS-TAKSIKDLKG 119 (348)
T ss_dssp TTC-CCCSGGGGTT
T ss_pred CCC-CCCCHHHcCC
Confidence 865 3333444443
No 173
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=79.97 E-value=4.7 Score=37.96 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEee
Q 006736 87 MVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (633)
Q Consensus 87 ~~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 127 (633)
.+.+..|...|+.+|+-+-++... .+..+-+..++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 445556666799999987776554 4556667779999973
No 174
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=79.85 E-value=2.5 Score=42.33 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh--
Q 006736 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-- 232 (633)
Q Consensus 155 al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-- 232 (633)
.+.++++.+| +|+.||++...+. ...+.+.+.+++ |+.+. ...+..+.+.+.+...++.+++.++|+||-.+.+
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~-~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 118 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIR-FERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKT 118 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEE-EEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeE-EEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 3567788888 9999888665543 366778888888 98873 3445555667788888888888899999987655
Q ss_pred HHHHHHHH
Q 006736 233 IWGLEVLN 240 (633)
Q Consensus 233 ~~~~~il~ 240 (633)
-++.+++.
T Consensus 119 ~D~AK~iA 126 (387)
T 3uhj_A 119 ADTAKIVA 126 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555554
No 175
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=77.28 E-value=7.4 Score=37.89 Aligned_cols=88 Identities=7% Similarity=-0.133 Sum_probs=55.9
Q ss_pred HHHHHHcCCcEEEEEEec----CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh
Q 006736 157 ADIVDYFGWRNVIALYVD----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (633)
Q Consensus 157 ~~ll~~~~w~~v~ii~~d----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 232 (633)
++-++.-.-++|+++..+ +.|.......+.+.+++.|..+.....- .+.......++.+...+.|.||+....
T Consensus 53 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 53 ARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK---HSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECT---TSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred HHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 333444456789998865 3455667788888999999988754421 233444567778888899999997654
Q ss_pred HHHHHHHHHHHHcCC
Q 006736 233 IWGLEVLNAAKHLRM 247 (633)
Q Consensus 233 ~~~~~il~~a~~~g~ 247 (633)
.....+.+.+.+.++
T Consensus 130 ~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SCHHHHHHHHHHCSS
T ss_pred CChHHHHHHHHcCCC
Confidence 344456666666554
No 176
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=77.11 E-value=8.9 Score=37.78 Aligned_cols=96 Identities=8% Similarity=0.008 Sum_probs=64.1
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~ 219 (633)
|+-+...+... ..+.+++++++.+++.+|++...+. ...+.+.+.+++.|+++...... ++.+.+.+... +.++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHH-HHhh
Confidence 44455554432 2356777888889999998655433 45678888898889877543322 33456667777 7777
Q ss_pred cCCCeEEEEeeCh--HHHHHHHHH
Q 006736 220 SMMSRILILHTYD--IWGLEVLNA 241 (633)
Q Consensus 220 ~~~~~vIvl~~~~--~~~~~il~~ 241 (633)
+.+.|+||-.+.+ -++..++..
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA~ 109 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMAF 109 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHH
T ss_pred hcCCCEEEEECChHHHHHHHHHHh
Confidence 7889999977554 566666653
No 177
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=76.72 E-value=14 Score=34.58 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=28.2
Q ss_pred HHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 88 VEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 88 ~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
+.+..|.+.++.+|+-+-++.++.++..+-+..++|+|.
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 334455566999999876666665666777788999996
No 178
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=76.60 E-value=3.6 Score=39.98 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEE
Q 006736 468 NGRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAV 546 (633)
Q Consensus 468 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 546 (633)
...+||||... ...|+.... -...+.+++ |.+ +++++. .++..++..|.+|++|+++
T Consensus 27 ~~~~lrig~~~--~~~p~~~a~------------~~g~~~~~~~g~~--v~~~~~------~~~~~~~~al~~G~~D~~~ 84 (324)
T 3ksx_A 27 EPAQLRIGYQK--AVSSLVLAK------------QHRLLEQRFPRTK--ITWVEF------PAGPQLLEALNVGSIDLGG 84 (324)
T ss_dssp CCSEEEEEEET--TCHHHHHHH------------HHTHHHHHCTTSE--EEEEEE------SSHHHHHHHHHTTSCSEEE
T ss_pred CCCeEEEEecC--CchhHHHHH------------hhCHHHHhcCCCc--eEEEEC------CCHHHHHHHHHCCCCCEEe
Confidence 45789999875 333332211 112345555 755 566553 4689999999999999986
Q ss_pred eeeEe-----eccccceeeeccceeecceEEEEecCCCCcCcccccc
Q 006736 547 GDFAI-----TTERTKMVDFTQPYIESGLVVVAPIKKLNSNAWAFLN 588 (633)
Q Consensus 547 ~~~~~-----~~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~l~ 588 (633)
.+... ...+.-.+..+.++...+..+++++++ .......|+
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s-~I~s~~DLk 130 (324)
T 3ksx_A 85 AGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKS-ALRTVADLK 130 (324)
T ss_dssp EESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC-SCCSGGGGT
T ss_pred ecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCC-CCCCHHHhC
Confidence 65321 111111222233444456888998865 333344444
No 179
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=76.58 E-value=8.3 Score=36.97 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=58.5
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...++|.||+.... ......++.+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N--GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 678888899999999999998875533 1 344455677888888899999987654 3445678888
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 87664
No 180
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=76.20 E-value=16 Score=36.76 Aligned_cols=93 Identities=17% Similarity=-0.017 Sum_probs=63.7
Q ss_pred CcEEEEEEecCCCcc--hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh------HHHH
Q 006736 165 WRNVIALYVDDDHGR--NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD------IWGL 236 (633)
Q Consensus 165 w~~v~ii~~d~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~------~~~~ 236 (633)
-++|.|+|. ..||. ..++.+.+.+.+.|+++....... ....+...++..+. +++.|++.+.. ....
T Consensus 265 ~~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d--~~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 265 KGKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYKFSD--EERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp TTEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHH
T ss_pred ccceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEEecc--CCCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHH
Confidence 358999994 45554 457889999999999876544444 34457777777775 56777776553 4666
Q ss_pred HHHHHHHHcCCCCCCeEEEEeCcccc
Q 006736 237 EVLNAAKHLRMMESGYVWIVTDWLSS 262 (633)
Q Consensus 237 ~il~~a~~~g~~~~~~~~i~~~~~~~ 262 (633)
.++..+......+.....+++-+|..
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHhcccCCCEEEEEECCCCCc
Confidence 77877777666555555677777753
No 181
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=75.63 E-value=2.1 Score=42.04 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=41.8
Q ss_pred HHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeec-cccceeeeccce--eecceEEEEecCC
Q 006736 508 ELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT-ERTKMVDFTQPY--IESGLVVVAPIKK 578 (633)
Q Consensus 508 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~r~~~~~fs~p~--~~~~~~~lv~~~~ 578 (633)
++.|++ +++.+. .+|..++..|.+|++|+++.+.+... .|.+..++.... ...+..+++++++
T Consensus 78 ~~~G~~--Ve~~~~------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s 143 (341)
T 3un6_A 78 NHPKYK--LELVKF------NNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGM 143 (341)
T ss_dssp SSCSSE--EEEEEC------SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTC
T ss_pred HHcCCc--EEEEEc------CCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCC
Confidence 556744 677664 46999999999999999987765433 244443432211 2457788888765
No 182
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=75.23 E-value=19 Score=34.06 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEee
Q 006736 87 MVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (633)
Q Consensus 87 ~~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 127 (633)
.+.+..+.+.++.+|+-+-++.++..+..+-+..++|+|..
T Consensus 74 ~~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 74 VEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 33444455559998888666666555666667789999973
No 183
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=74.45 E-value=21 Score=33.64 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 87 MVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 87 ~~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
.+.+..|.++++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 3344445556999999866666655666676778999996
No 184
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=74.32 E-value=8.9 Score=35.91 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=57.2
Q ss_pred CCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHH
Q 006736 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (633)
Q Consensus 164 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 241 (633)
+-++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+..... ...++.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN---ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT---TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 44688988865 4566777888999999999988754322 2344456778888888999999986555 667777
Q ss_pred HHHcCC
Q 006736 242 AKHLRM 247 (633)
Q Consensus 242 a~~~g~ 247 (633)
+.+.|+
T Consensus 81 l~~~~i 86 (276)
T 3jy6_A 81 ILHQQM 86 (276)
T ss_dssp HHTTSS
T ss_pred HHHCCC
Confidence 777664
No 185
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=74.11 E-value=9.3 Score=36.05 Aligned_cols=80 Identities=6% Similarity=-0.125 Sum_probs=57.9
Q ss_pred CcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHHH
Q 006736 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNA 241 (633)
Q Consensus 165 w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~ 241 (633)
-++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...++|.||+... .......++.
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG---RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 3678988864 4466677888999999999988755321 24445567777887788999998754 4566677888
Q ss_pred HHHcCC
Q 006736 242 AKHLRM 247 (633)
Q Consensus 242 a~~~g~ 247 (633)
+.+.|+
T Consensus 82 ~~~~~i 87 (291)
T 3l49_A 82 INDAGI 87 (291)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 888775
No 186
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=74.09 E-value=6.9 Score=37.34 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=56.9
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a 242 (633)
++++++..+ +.|.....+.+++.+++.|..+.....- ..+.......++.+...++|.||+... .......++.+
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAA--QYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECS--SSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCC--cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 678888854 5677777889999999999988753211 134455567777777788999998754 34456678888
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88765
No 187
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=73.58 E-value=16 Score=34.71 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 87 MVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 87 ~~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
.+.+..|.++++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 76 ~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 76 WEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 3444455566999998866666655666677778999997
No 188
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=73.27 E-value=12 Score=35.41 Aligned_cols=79 Identities=11% Similarity=-0.041 Sum_probs=57.5
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChH----HHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI----WGLEVL 239 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~----~~~~il 239 (633)
++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN---NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 799999865 5677788899999999999988754322 2444556777888888999999875432 344667
Q ss_pred HHHHHcCC
Q 006736 240 NAAKHLRM 247 (633)
Q Consensus 240 ~~a~~~g~ 247 (633)
+.+.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 77777665
No 189
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=73.04 E-value=29 Score=28.57 Aligned_cols=85 Identities=6% Similarity=0.003 Sum_probs=56.1
Q ss_pred EEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh----HHHHHHHHHH
Q 006736 167 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNAA 242 (633)
Q Consensus 167 ~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il~~a 242 (633)
+|.+.....+.-.-...-+...++..|+++.+.... ......++.+++.++++|.+++.. ..+..+++++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~------~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL------SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE------ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 555554444444455677888899999999865432 223566667777789999998654 3466778888
Q ss_pred HHcCCCCCCeEEEEeC
Q 006736 243 KHLRMMESGYVWIVTD 258 (633)
Q Consensus 243 ~~~g~~~~~~~~i~~~ 258 (633)
++.|.. .-.+|++..
T Consensus 79 ~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHTTCT-TCEEEEEES
T ss_pred HhcCCC-CCEEEEECC
Confidence 887764 234566654
No 190
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=72.68 E-value=9.4 Score=37.87 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=63.9
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~ 219 (633)
|+-+...+... ..+.++++.++ +++.+|++...+. ...+.+.+.+++.|+.+.. ..+..+.+.+.+...++.++
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~ 83 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIAR 83 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHH
Confidence 44444454432 23566777778 9999888654332 4578888899888988753 33443344557777788888
Q ss_pred cCCCeEEEEeeCh--HHHHHHHHH
Q 006736 220 SMMSRILILHTYD--IWGLEVLNA 241 (633)
Q Consensus 220 ~~~~~vIvl~~~~--~~~~~il~~ 241 (633)
+.++|+||-.+.+ -++..++..
T Consensus 84 ~~~~d~IIavGGGsv~D~aK~iA~ 107 (370)
T 1jq5_A 84 KAEAAIVIGVGGGKTLDTAKAVAD 107 (370)
T ss_dssp HTTCSEEEEEESHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCChHHHHHHHHHHH
Confidence 8899999977554 566666653
No 191
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=72.14 E-value=21 Score=33.10 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCc
Q 006736 87 MVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWR 166 (633)
Q Consensus 87 ~~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~ 166 (633)
.+.+..+.+.++.+|+-+-++.++..+..+-+..++|+|... -.++...++..+-+
T Consensus 52 ~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~------------------------e~~~~~A~~~~~~~ 107 (254)
T 1b73_A 52 LECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI------------------------EPGVKEALKKSRNK 107 (254)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH------------------------HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee------------------------HHHHHHHHHccCCC
Confidence 344445556699988876665553445566667789999730 01122223345678
Q ss_pred EEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEee--cCCC--C---Chh----hHHHHHHHhhcCCCeEEEEeeCh
Q 006736 167 NVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVP--LSPK--G---SRN----QIIDTLLTVSSMMSRILILHTYD 232 (633)
Q Consensus 167 ~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~--~~~~--~---~~~----~~~~~l~~i~~~~~~vIvl~~~~ 232 (633)
+|+++.+....- ...+++.+++.|+++..... +-.. . +.. .+...++.+.+. +|+||+.|..
T Consensus 108 rigVlaT~~T~~---~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 108 KIGVIGTPATVK---SGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp EEEEEECHHHHH---HCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred EEEEEEChHHhh---hHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 999998653211 12345566677887752211 1100 1 112 233344444445 9999997764
No 192
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=72.09 E-value=25 Score=33.00 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=29.5
Q ss_pred HHHHHHHHHh-cCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 86 GMVEALTLLE-NETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 86 a~~~~~~li~-~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
..+.+..+.+ .++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 54 ~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVig 95 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVG 95 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEc
Confidence 3445556667 7999888866666655666666778999997
No 193
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=71.62 E-value=10 Score=35.71 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=56.6
Q ss_pred CCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHH
Q 006736 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLN 240 (633)
Q Consensus 164 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~ 240 (633)
+-++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...++|.||+... .......++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ---NSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS---SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC---CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 44689988864 4566677888999999999988754322 24445567778888889999998754 344456778
Q ss_pred HHHHcCC
Q 006736 241 AAKHLRM 247 (633)
Q Consensus 241 ~a~~~g~ 247 (633)
.+.+.|+
T Consensus 84 ~~~~~~i 90 (293)
T 3l6u_A 84 EAKKAGI 90 (293)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8877664
No 194
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=71.62 E-value=9.3 Score=37.37 Aligned_cols=80 Identities=8% Similarity=-0.031 Sum_probs=56.8
Q ss_pred CcEEEEEEec--C-CCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc--CCCeEEEEeeChHHHHHHH
Q 006736 165 WRNVIALYVD--D-DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS--MMSRILILHTYDIWGLEVL 239 (633)
Q Consensus 165 w~~v~ii~~d--~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~--~~~~vIvl~~~~~~~~~il 239 (633)
-.+|+++..+ + .|.....+.+++.+++.|+.+..... . .+.......++.+.. .++|.||+.........++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 4689999865 2 56777888999999999998875532 1 233444556666666 5899999986555667778
Q ss_pred HHHHHcCC
Q 006736 240 NAAKHLRM 247 (633)
Q Consensus 240 ~~a~~~g~ 247 (633)
+.+.+.|+
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 88887664
No 195
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=71.00 E-value=43 Score=28.41 Aligned_cols=86 Identities=8% Similarity=-0.019 Sum_probs=58.2
Q ss_pred CcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh----HHHHHHHH
Q 006736 165 WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLN 240 (633)
Q Consensus 165 w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il~ 240 (633)
-.+|.+.....+.-.-+...+...++..|+++.+... .......+..+++.++++|.+.+.. ..+..+++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~------~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~ 91 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL------RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMA 91 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS------BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHH
Confidence 3466655545444455677788889999999874321 1234566777788899999998653 67788888
Q ss_pred HHHHcCCCCCCeEEEEe
Q 006736 241 AAKHLRMMESGYVWIVT 257 (633)
Q Consensus 241 ~a~~~g~~~~~~~~i~~ 257 (633)
++++.|.. .-.+|++.
T Consensus 92 ~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 92 KLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHTTCT-TSCEEEEE
T ss_pred HHHhcCCC-CCEEEEeC
Confidence 88887752 23456664
No 196
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=70.92 E-value=12 Score=36.34 Aligned_cols=84 Identities=7% Similarity=-0.047 Sum_probs=54.8
Q ss_pred HHHcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHH
Q 006736 160 VDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLE 237 (633)
Q Consensus 160 l~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 237 (633)
++...-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+....... .
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~ 132 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSH---YDAGQELQLLRAYLQHRPDGVLITGLSHAE-P 132 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEEECSCCCT-T
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHcCCCCEEEEeCCCCCH-H
Confidence 333445689998864 5677788899999999999987654321 234455677788888899999987543222 4
Q ss_pred HHHHHHHcCC
Q 006736 238 VLNAAKHLRM 247 (633)
Q Consensus 238 il~~a~~~g~ 247 (633)
.++.+.+.++
T Consensus 133 ~~~~l~~~~i 142 (339)
T 3h5o_A 133 FERILSQHAL 142 (339)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhcCCC
Confidence 5566666664
No 197
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=70.53 E-value=15 Score=32.69 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=56.7
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. .....++..|.+|++|+++..
T Consensus 4 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 4 SGPLHIGLIP--TV------------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp CEEEEEEECT--TT------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEEEEecc--ch------------hhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEec
Confidence 4679999863 11 12456678888888773 25577776 678999999999999999754
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. .....+. +.|+....+.++++++.
T Consensus 62 ~~---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 62 LV---KESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp CC---GGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCCCcc-eeeeecccEEEEEcCCC
Confidence 22 1122232 35777777888887654
No 198
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=70.25 E-value=12 Score=36.17 Aligned_cols=79 Identities=10% Similarity=0.037 Sum_probs=57.2
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...++|.||+.... ......++.+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYAD---DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCC---CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888865 5677778889999999999987755421 244445566777777789999987544 4556778888
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88664
No 199
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=70.12 E-value=12 Score=35.37 Aligned_cols=85 Identities=8% Similarity=-0.006 Sum_probs=57.9
Q ss_pred cCCcEEEEEEec---CCCcchhHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHH
Q 006736 163 FGWRNVIALYVD---DDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLE 237 (633)
Q Consensus 163 ~~w~~v~ii~~d---~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~ 237 (633)
-+-++|+++..+ +.|.....+.+++.+++. |..+..........+.......++.+...+.|.||+.... .....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 85 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKG 85 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHH
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHH
Confidence 345688888754 456667788888899888 7776654432212344556677888888899999998654 34566
Q ss_pred HHHHHHHcCC
Q 006736 238 VLNAAKHLRM 247 (633)
Q Consensus 238 il~~a~~~g~ 247 (633)
.++.+.+.|+
T Consensus 86 ~~~~~~~~~i 95 (304)
T 3gbv_A 86 FTDALNELGI 95 (304)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHCCC
Confidence 7777777664
No 200
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=70.06 E-value=5.7 Score=37.11 Aligned_cols=79 Identities=6% Similarity=-0.094 Sum_probs=55.1
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~ 243 (633)
++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+..........++.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSD---DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 578888865 4566777888999999999988754321 24445567778888889999998754422345667777
Q ss_pred HcCC
Q 006736 244 HLRM 247 (633)
Q Consensus 244 ~~g~ 247 (633)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7664
No 201
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=69.28 E-value=14 Score=34.99 Aligned_cols=78 Identities=6% Similarity=0.009 Sum_probs=56.2
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a 242 (633)
.+|+++..+ +.|.....+.+++.+++.|..+..... .+.......++.+...++|.||+... .......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 368888764 456677788899999999998864432 24455567788888888999998754 44556678888
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88664
No 202
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=69.14 E-value=21 Score=30.79 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCCcc---hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEeeC
Q 006736 165 WRNVIALYVDDDHGR---NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 231 (633)
Q Consensus 165 w~~v~ii~~d~~~g~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~ 231 (633)
--+++||...++-|+ .....+.+.+++.|+++.....++ .+..++...+++..+. +.|+||..+.
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK--ENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 358899887666553 234678888889999988777776 4566788888877665 6899988743
No 203
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=68.81 E-value=43 Score=30.33 Aligned_cols=162 Identities=9% Similarity=0.047 Sum_probs=95.5
Q ss_pred eEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcCCchhhH
Q 006736 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQFSVIA 110 (633)
Q Consensus 32 ~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~~~s~~~ 110 (633)
-.+|.++.|.+ .+..-++-.+.+.+ ...++.+.+ ++-.+++..+.+++.. ++.+||. ...++
T Consensus 12 m~~ii~i~~~~-----~L~~~~~~i~~e~~--------~~~~I~vi~--~~le~av~~a~~~~~~~~~dVIIS--RGgta 74 (225)
T 2pju_A 12 DKPVIWTVSVT-----RLFELFRDISLEFD--------HLANITPIQ--LGFEKAVTYIRKKLANERCDAIIA--AGSNG 74 (225)
T ss_dssp -CCEEEEECCH-----HHHHHHHHHHTTTT--------TTCEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEE--EHHHH
T ss_pred CCCEEEEEchH-----HHHHHHHHHHHhhC--------CCceEEEec--CcHHHHHHHHHHHHhcCCCeEEEe--CChHH
Confidence 34778888864 23333332222221 123444444 3456778888887775 6999996 33333
Q ss_pred HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHh
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLA 190 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~ 190 (633)
..+. +..++|+|.. ..+..+..+++...-+ ++ ++++++...+.. ...+.+.+.+
T Consensus 75 ~~Lr---~~~~iPVV~I------------------~vs~~Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll- 128 (225)
T 2pju_A 75 AYLK---SRLSVPVILI------------------KPSGYDVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF- 128 (225)
T ss_dssp HHHH---TTCSSCEEEE------------------CCCHHHHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH-
T ss_pred HHHH---hhCCCCEEEe------------------cCCHHHHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh-
Confidence 3333 3468999973 1234445555555533 33 589998865431 2344454444
Q ss_pred hcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHcCCC
Q 006736 191 EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 191 ~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~g~~ 248 (633)
|+++... .+ .+..+....++++++.+.++||-.+. ..+.|++.|+.
T Consensus 129 --~~~i~~~-~~---~~~ee~~~~i~~l~~~G~~vVVG~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 129 --NLRLDQR-SY---ITEEDARGQINELKANGTEAVVGAGL------ITDLAEEAGMT 174 (225)
T ss_dssp --TCCEEEE-EE---SSHHHHHHHHHHHHHTTCCEEEESHH------HHHHHHHTTSE
T ss_pred --CCceEEE-Ee---CCHHHHHHHHHHHHHCCCCEEECCHH------HHHHHHHcCCc
Confidence 5555543 23 26679999999999999999776533 25567888864
No 204
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=67.59 E-value=49 Score=30.89 Aligned_cols=118 Identities=15% Similarity=0.090 Sum_probs=71.0
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CceEEEcCCchhhH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aviG~~~s~~~ 110 (633)
-+||++..........-..|++.++++.+ + ..... +.....+...+.+.+.+++.. .+.+|+.. +...+
T Consensus 127 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g----~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~A 197 (289)
T 3k9c_A 127 RNIAHIDGADAPGGADRRAGFLAAMDRHG----L--SASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAF-NDRCA 197 (289)
T ss_dssp CSEEEECCTTSTTHHHHHHHHHHHHHHTT----C--GGGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEES-SHHHH
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHHHHCC----C--CCCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEEC-ChHHH
Confidence 36787765543344455778877777632 1 11122 233455677778888888875 68899974 44444
Q ss_pred HHHHHhhccCC------ccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 111 HLVSHIANEFQ------VPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 111 ~~va~~~~~~~------iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
..+...+...+ +.+|++.... +.....|-+-.+..+...++...+++|.
T Consensus 198 ~g~~~al~~~g~~vP~di~vig~D~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 198 TGVLDLLVRSGRDVPADISVVGYDDSR--LARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECCT--TTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCHH--HHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 45555555554 3467664432 3332335566677777888888888653
No 205
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=67.20 E-value=36 Score=25.23 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=46.5
Q ss_pred EEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 006736 143 VRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (633)
Q Consensus 143 ~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~ 219 (633)
.-+.-.+...+.....+++.+|.+-..|||+.+ +...+.|....++.|.++... .+..|+...+.++.
T Consensus 54 vvvvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtv------tspddfkkslerli 121 (134)
T 2l69_A 54 VVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTV------TSPDDFKKSLERLI 121 (134)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEE------SSHHHHHHHHHHHH
T ss_pred EEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEe------cChHHHHHHHHHHH
Confidence 334456677788888888888888888888544 356777888888888876532 24456666665543
No 206
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=67.07 E-value=12 Score=35.72 Aligned_cols=86 Identities=7% Similarity=-0.098 Sum_probs=53.8
Q ss_pred HHHHHcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHH
Q 006736 158 DIVDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWG 235 (633)
Q Consensus 158 ~ll~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 235 (633)
+-|+.-+-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+.......
T Consensus 8 r~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 8 RALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID---APPRGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp ---------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC---STTHHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred HHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 33444445679988864 5577788889999999999987754322 233445677888888899999997644332
Q ss_pred HHHHHHHHHcCC
Q 006736 236 LEVLNAAKHLRM 247 (633)
Q Consensus 236 ~~il~~a~~~g~ 247 (633)
...++.+.+ ++
T Consensus 85 ~~~~~~l~~-~i 95 (303)
T 3kke_A 85 DDMLAAVLE-GV 95 (303)
T ss_dssp HHHHHHHHT-TS
T ss_pred HHHHHHHhC-CC
Confidence 225666666 54
No 207
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=66.75 E-value=30 Score=32.69 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=25.6
Q ss_pred HHHHh-cCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 91 LTLLE-NETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 91 ~~li~-~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
..++. .++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 77 ~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 77 TAVQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 33444 4899888866666655666676778999996
No 208
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=65.81 E-value=15 Score=35.95 Aligned_cols=84 Identities=12% Similarity=-0.051 Sum_probs=53.5
Q ss_pred HHHcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHH
Q 006736 160 VDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLE 237 (633)
Q Consensus 160 l~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 237 (633)
++.-.-+.|+++..+ +.|.....+.+.+.+++.|..+.....- .+.......++.+...+.|.||+...... ..
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 140 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA---YSPEREEQLVETMLRRRPEAMVLSYDGHT-EQ 140 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEEECSCCC-HH
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HH
Confidence 333345689988864 4555667788889999999988654321 23444556777787889999998754332 24
Q ss_pred HHHHHHHcCC
Q 006736 238 VLNAAKHLRM 247 (633)
Q Consensus 238 il~~a~~~g~ 247 (633)
.++.+.+.++
T Consensus 141 ~~~~l~~~~i 150 (355)
T 3e3m_A 141 TIRLLQRASI 150 (355)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 5666777664
No 209
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=65.73 E-value=16 Score=32.08 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=57.0
Q ss_pred ceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
++|+||+.. .. ...+-.+++..+.++. + +++++.. .....+...|.+|++|+++..
T Consensus 4 g~l~Ig~~~--~~------------~~~~l~~~l~~~~~~~P~--i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~ 60 (219)
T 3jv9_A 4 GAFKLGLIF--TV------------APYLLPKLIVSLRRTAPK--MPLMLEE-------NYTHTLTESLKRGDVDAIIVA 60 (219)
T ss_dssp CCEEEEEET--TT------------HHHHHHHHHHHHHHHSTT--CCEEEEE-------ECHHHHHHHHHHTSSSEEEEE
T ss_pred CcEEEEEcc--hh------------hHHHHHHHHHHHHHHCCC--cEEEEEe-------CCcHHHHHHHHcCCCCEEEEc
Confidence 578888873 21 1235567788887776 5 4477766 568899999999999999865
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
... ....+. +.++....+.++++++.
T Consensus 61 ~~~---~~~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 61 EPF---QEPGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp SSC---CCTTEE-EEEEEEEEEEEEEETTC
T ss_pred CCC---CCCCee-EEEeeeceEEEEEeCCC
Confidence 422 222232 46788888999998764
No 210
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=65.46 E-value=46 Score=31.18 Aligned_cols=59 Identities=8% Similarity=-0.119 Sum_probs=36.6
Q ss_pred CCCcEEEEEEecCC------CChHHHHHHH----HHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 67 LGGTKLKLTVHDTN------YSRFLGMVEA----LTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 67 l~g~~l~~~~~D~~------~~~~~a~~~~----~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
||+..+.+.- |+. .+..+..+.+ ..|.+.++.+|+-+-++.++.++..+-+..++|+|.
T Consensus 47 lP~e~~iy~~-D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 47 RLFDEIIYYG-DTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp TCCSEEEEEE-CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCCEEEEe-cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 3666665443 432 2444433333 334445999999876666665566777788999996
No 211
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=64.32 E-value=22 Score=30.99 Aligned_cols=84 Identities=12% Similarity=0.043 Sum_probs=57.1
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. .+...+..+|.+|++|+++..
T Consensus 4 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYP--AL------------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECG--GG------------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeech--hh------------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEe
Confidence 3679999863 11 11345678888888873 25577776 678899999999999999754
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. .....+. +.++....+.++++++.
T Consensus 62 ~~---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 62 DL---DLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp SS---SCCTTEE-EEEEEEECCEEEEETTC
T ss_pred cC---CCCCCce-EEEeecCceEEEEeCCC
Confidence 21 1122232 36788888888887664
No 212
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=64.27 E-value=19 Score=34.05 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=53.3
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCc-EEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRC-RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNA 241 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~ 241 (633)
++|+++..+ +.|.....+.+++.+++.|. .+..... ..+.......++.+...++|.||+.... ......++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 478888753 45666778888899999997 7764422 1233445566777777889999887543 334566777
Q ss_pred HHHcCC
Q 006736 242 AKHLRM 247 (633)
Q Consensus 242 a~~~g~ 247 (633)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 777664
No 213
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=63.12 E-value=92 Score=28.52 Aligned_cols=169 Identities=10% Similarity=0.023 Sum_probs=85.0
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-------ChHHHH----HHHHHHHhcCceEE
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-------SRFLGM----VEALTLLENETVAI 101 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~-------~~~~a~----~~~~~li~~~v~av 101 (633)
.+|.++-|-+. ..+-..+..+++.+.. ||.++.....+.+. +...+. +.+.++..+++.+|
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~~-----p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVAA-----PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHCC-----TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhcC-----CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 57888888764 2344566656665531 57777766554332 222222 22333344588888
Q ss_pred EcCCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchh
Q 006736 102 IGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNG 181 (633)
Q Consensus 102 iG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~ 181 (633)
+-.-++.... ..+-+..++|+|.. .++.++.....+ ++|+||.+....
T Consensus 74 viaCnt~~~l--~~lr~~~~iPvigi-------------------------~e~~~~~a~~~~-~rigVlaT~~t~---- 121 (245)
T 3qvl_A 74 VIASFGDPGL--LAARELAQGPVIGI-------------------------AEAAMHMATMVA-TRFSIVTTLPRT---- 121 (245)
T ss_dssp EEC-CCCTTH--HHHHHHCSSCEEEH-------------------------HHHHHHHHHHHC-SCEEEEESCGGG----
T ss_pred EEeCCChhHH--HHHHHHcCCCEECc-------------------------cHHHHHHHHHcC-CEEEEEEcchhH----
Confidence 7655555433 34445678998863 111111111123 789988865431
Q ss_pred HHHHHHHHhhcCcE--EEEEeecCC-----CCCh----hhHHHHHHH-hhcCCCeEEEEeeCh-HHHHHHHHH
Q 006736 182 IAALGDKLAEKRCR--LSHKVPLSP-----KGSR----NQIIDTLLT-VSSMMSRILILHTYD-IWGLEVLNA 241 (633)
Q Consensus 182 ~~~~~~~~~~~g~~--v~~~~~~~~-----~~~~----~~~~~~l~~-i~~~~~~vIvl~~~~-~~~~~il~~ 241 (633)
...+++.+++.|.. +........ ..+. ..+.....+ +++.+.|+||+.|.. ......+++
T Consensus 122 ~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~ 194 (245)
T 3qvl_A 122 LIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTR 194 (245)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHH
Confidence 35566666665543 221111110 0111 122222333 334689999997654 444444443
No 214
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=63.06 E-value=5.1 Score=36.79 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=44.9
Q ss_pred HHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHHHcCCcEE
Q 006736 89 EALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNV 168 (633)
Q Consensus 89 ~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v 168 (633)
.+..|...|+.+|+-+-++.+. .+..+-+..++|+|+. ..+.++-+...+-++|
T Consensus 68 ~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rV 121 (231)
T 3ojc_A 68 AAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKI 121 (231)
T ss_dssp HHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEE
T ss_pred HHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEE
Confidence 3344445599988876665443 2344555668888852 2334444444577899
Q ss_pred EEEEecCCCcchhHHHHHHHHhhc-CcEEE
Q 006736 169 IALYVDDDHGRNGIAALGDKLAEK-RCRLS 197 (633)
Q Consensus 169 ~ii~~d~~~g~~~~~~~~~~~~~~-g~~v~ 197 (633)
+++.+..--- ...+++.+++. |+++.
T Consensus 122 gvLaT~~T~~---s~~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 122 GLLGTRYTME---QGFYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEESCHHHHH---STTTHHHHHHTTCCEEE
T ss_pred EEEcCHHHhh---chHHHHHHHhcCCCEEE
Confidence 9997652110 11234455555 87764
No 215
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=62.71 E-value=20 Score=31.97 Aligned_cols=84 Identities=12% Similarity=-0.018 Sum_probs=59.0
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. .+...+...|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~--~~------------~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLP--TI------------APYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECT--TT------------HHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEecc--cc------------chhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 4679999873 21 12355677888887773 25577776 678999999999999999865
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.... ...+. +.++....+.++++++.
T Consensus 68 ~~~~---~~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 68 SKAE---TEGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp SCCC---CTTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCC---CCCeE-EEEecccCEEEEEcCCC
Confidence 4322 22233 47788888999998775
No 216
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=62.70 E-value=19 Score=33.86 Aligned_cols=79 Identities=5% Similarity=-0.070 Sum_probs=53.1
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...++|.||+.... ......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS-Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 478888754 556667788888999999998765432 1 233444566777777889999987543 3334566777
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.++
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76654
No 217
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=62.64 E-value=8.7 Score=37.11 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=40.9
Q ss_pred HHHHHHCCCccceEEEeCCCCCCCCCH-HhHHHHHHcCcccEEEeeeE-eeccccceee-e--ccceeecc--eEEEEec
Q 006736 504 TAVLELLPYAVPYKLVPFGDGHNSPKR-FDLLRLVSEEVYDAAVGDFA-ITTERTKMVD-F--TQPYIESG--LVVVAPI 576 (633)
Q Consensus 504 ~~ia~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~~~~~~-~~~~r~~~~~-f--s~p~~~~~--~~~lv~~ 576 (633)
+-+.++.|.+ +++++. ... ..++..|.+|++|+++++.+ ....|.+..+ | ..++.... ..+++++
T Consensus 36 ~G~~~~~Gl~--V~~~~~------~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ 107 (321)
T 2x7q_A 36 QGYYKAHDLS--IEFVKV------PEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGS 107 (321)
T ss_dssp TTHHHHTTCC--EEEEEC------TTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEES
T ss_pred CCcHHHCCce--EEEEEC------CCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECC
Confidence 3355677855 666652 223 34899999999999987653 3334544433 3 24455444 3678877
Q ss_pred CC
Q 006736 577 KK 578 (633)
Q Consensus 577 ~~ 578 (633)
++
T Consensus 108 ds 109 (321)
T 2x7q_A 108 NR 109 (321)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 218
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=62.25 E-value=26 Score=32.89 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=51.6
Q ss_pred HHHcCCcEEEEEEec----CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHH
Q 006736 160 VDYFGWRNVIALYVD----DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWG 235 (633)
Q Consensus 160 l~~~~w~~v~ii~~d----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 235 (633)
|+.-.-.+|+++..+ +.|.....+.+++.+++.|..+.... ...+.......++.+...+.|.||+.......
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 90 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV 90 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh
Confidence 333345689998854 45667778889999999999876432 11233445566777777889999887543221
Q ss_pred HHHHHHHHH-cCC
Q 006736 236 LEVLNAAKH-LRM 247 (633)
Q Consensus 236 ~~il~~a~~-~g~ 247 (633)
..++.+.+ .++
T Consensus 91 -~~~~~l~~~~~i 102 (296)
T 3brq_A 91 -DEIDDIIDAHSQ 102 (296)
T ss_dssp -HHHHHHHHTCSS
T ss_pred -HHHHHHHhcCCC
Confidence 34566666 554
No 219
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=61.54 E-value=14 Score=32.68 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=57.7
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.. .+++++.. ++...+...|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVEC--HT------------CFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCC--TT------------THHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEeh--HH------------HHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 4679999873 21 12455677888888773 25577665 567889999999999999864
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
... ....+. ..++....+.++++++.
T Consensus 65 ~~~---~~~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 65 EAE---KQNGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCC---CCTTEE-EEEEEEEEEEEEECTTS
T ss_pred CCC---CcCCeE-EEEeecCcEEEEecCCC
Confidence 322 222233 46788888899988775
No 220
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=61.48 E-value=22 Score=33.62 Aligned_cols=80 Identities=9% Similarity=-0.067 Sum_probs=52.9
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
.+|+++..+ +.|.....+.+++.+++.|+.+.... ....+.......++.+...+.|.||+.... ......++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 578887743 45666777888889999998875321 111233445566777777889998887543 4445667777
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.++
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77654
No 221
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=61.27 E-value=15 Score=35.92 Aligned_cols=79 Identities=6% Similarity=-0.051 Sum_probs=51.0
Q ss_pred CcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHH
Q 006736 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (633)
Q Consensus 165 w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a 242 (633)
-++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.+
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 3578888854 456667778888899999988765432 1 23344456677777788999988765433 2456666
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 142 ~~~~i 146 (348)
T 3bil_A 142 QKQGM 146 (348)
T ss_dssp HHC-C
T ss_pred HhCCC
Confidence 66554
No 222
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=60.77 E-value=14 Score=34.85 Aligned_cols=81 Identities=6% Similarity=-0.095 Sum_probs=54.2
Q ss_pred cCCcEEEEEEec-------CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHH
Q 006736 163 FGWRNVIALYVD-------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWG 235 (633)
Q Consensus 163 ~~w~~v~ii~~d-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 235 (633)
-+-++|+++..+ +.|.....+.+++.+++.|..+... ....+.......++.+...+.|.||+......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~- 81 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN- 81 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-
Confidence 345688988765 4566677888889999999987643 21123334456677777889999998754422
Q ss_pred HHHHHHHHHcCC
Q 006736 236 LEVLNAAKHLRM 247 (633)
Q Consensus 236 ~~il~~a~~~g~ 247 (633)
...++.+.+.|+
T Consensus 82 ~~~~~~l~~~~i 93 (292)
T 3k4h_A 82 DRIIQYLHEQNF 93 (292)
T ss_dssp CHHHHHHHHTTC
T ss_pred hHHHHHHHHCCC
Confidence 246677777664
No 223
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=60.76 E-value=11 Score=36.12 Aligned_cols=80 Identities=6% Similarity=-0.120 Sum_probs=53.5
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
++|+++..+ +.|.....+.+++.+++.|+++.... +...+......+++.+...+.|.||+.... ......++.+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 578888753 45666677888888888998876421 111234445567777777899998886543 3345677888
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
++.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 87664
No 224
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=60.61 E-value=10 Score=35.83 Aligned_cols=81 Identities=9% Similarity=-0.119 Sum_probs=54.8
Q ss_pred cCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHH
Q 006736 163 FGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (633)
Q Consensus 163 ~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 240 (633)
-+-++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+..... ....++
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~ 81 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTA---EDIVREREAVGQFFERRVDGLILAPSEG-EHDYLR 81 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHH
Confidence 345688988864 4556677888989999999988754322 2444556677888888999999876543 334556
Q ss_pred HHHHcCC
Q 006736 241 AAKHLRM 247 (633)
Q Consensus 241 ~a~~~g~ 247 (633)
.+.+.|+
T Consensus 82 ~~~~~~i 88 (291)
T 3egc_A 82 TELPKTF 88 (291)
T ss_dssp HSSCTTS
T ss_pred HhhccCC
Confidence 6655553
No 225
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=60.42 E-value=11 Score=34.57 Aligned_cols=74 Identities=11% Similarity=0.029 Sum_probs=52.3
Q ss_pred eeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecccc---ceeeeccceeecceEE
Q 006736 496 SGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT---KMVDFTQPYIESGLVV 572 (633)
Q Consensus 496 ~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~---~~~~fs~p~~~~~~~~ 572 (633)
.|+--+|+..+.++.|.+ +++.. +....++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~--V~~~~-------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVK--VDVIA-------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCE--EEEEE-------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCe--EEEEE-------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 366778888898888855 55555 45788999999999999976543222211 1122346899999999
Q ss_pred EEecCC
Q 006736 573 VAPIKK 578 (633)
Q Consensus 573 lv~~~~ 578 (633)
++++++
T Consensus 89 V~P~~~ 94 (236)
T 3lr1_A 89 VGPKND 94 (236)
T ss_dssp EECTTC
T ss_pred EEECCC
Confidence 998876
No 226
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=60.03 E-value=31 Score=30.99 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=59.2
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEe
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVG 547 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 547 (633)
.++|+||+.. .. ...+-.+++..+.++. + +++++.. .+...+...|.+|++|+++.
T Consensus 18 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P~--i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~ 74 (241)
T 3oxn_A 18 DQTFTIATTD--YA------------MQTILPFALPRIYQEAPN--VSFNFLP-------LQHDRLSDQLTYEGADLAIC 74 (241)
T ss_dssp CCEEEEEECS--HH------------HHHTHHHHHHHHHHHCTT--CEEEEEE-------CCGGGHHHHHHTSCCSEEEE
T ss_pred CceEEEEech--HH------------HHHHHHHHHHHHHHHCCC--CEEEEEE-------CCcccHHHHHHcCCCCEEEe
Confidence 4689999873 11 1245567888888876 5 4577776 67889999999999999986
Q ss_pred eeEeeccccceeeeccceeecceEEEEecCC
Q 006736 548 DFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 548 ~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. ......+. +.++....+.++++++.
T Consensus 75 ~~---~~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 75 RP---TGPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CC---SSCCTTEE-EEEEECCCEEEEEETTS
T ss_pred cC---CCCCccce-eEEeecccEEEEEeCCC
Confidence 43 22223333 47788899999998776
No 227
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=59.71 E-value=10 Score=33.90 Aligned_cols=72 Identities=10% Similarity=-0.024 Sum_probs=47.2
Q ss_pred eHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCc-ccEEEeeeEeecc---ccceee--eccceeecceEE
Q 006736 499 CIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEV-YDAAVGDFAITTE---RTKMVD--FTQPYIESGLVV 572 (633)
Q Consensus 499 ~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~~~~~~~~~~---r~~~~~--fs~p~~~~~~~~ 572 (633)
--+++..+.++.|.+ +++.. ++...++..|.+|+ +|+++..-....+ +...+. -..|+....+++
T Consensus 14 l~~~~~~F~~~p~i~--v~~~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 84 (231)
T 1atg_A 14 LEQLAGQFAKQTGHA--VVISS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVL 84 (231)
T ss_dssp HHHHHHHHHHHHCCC--EEEEE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEE
T ss_pred HHHHHHHHHhccCCe--EEEEE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEE
Confidence 346777777777755 55554 55788999999998 9998753211111 112221 246888899999
Q ss_pred EEecCCC
Q 006736 573 VAPIKKL 579 (633)
Q Consensus 573 lv~~~~~ 579 (633)
+++++++
T Consensus 85 v~~~~~~ 91 (231)
T 1atg_A 85 WSAKPGL 91 (231)
T ss_dssp EESSTTT
T ss_pred EEcCCCC
Confidence 9987763
No 228
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=59.70 E-value=11 Score=35.71 Aligned_cols=85 Identities=7% Similarity=-0.083 Sum_probs=53.0
Q ss_pred HHHcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHH
Q 006736 160 VDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLE 237 (633)
Q Consensus 160 l~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 237 (633)
|+.-.-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+.........
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~ 91 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-E--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHP 91 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSCTTCH
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHH
Confidence 344455689998854 456667778888889999998765431 1 23344456677777788999998754322223
Q ss_pred HHHHHHHcCC
Q 006736 238 VLNAAKHLRM 247 (633)
Q Consensus 238 il~~a~~~g~ 247 (633)
+++.+.+.++
T Consensus 92 ~~~~~~~~~i 101 (293)
T 2iks_A 92 FYQRWANDPF 101 (293)
T ss_dssp HHHTTTTSSS
T ss_pred HHHHHHhCCC
Confidence 4555555443
No 229
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=59.54 E-value=26 Score=32.56 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=68.7
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CceEEEcCCchhhH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVIA 110 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aviG~~~s~~~ 110 (633)
-+|+++...... ...-..|++.++++. |.++.........+...+.+.+.+++.. .+.+|+.. +...+
T Consensus 119 ~~i~~i~~~~~~-~~~R~~gf~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a 188 (280)
T 3gyb_A 119 THIAHLRVGSGA-GLRRFESFEATMRAH--------GLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS-NDITA 188 (280)
T ss_dssp CSEEEECCSSHH-HHHHHHHHHHHHHHT--------TCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES-SHHHH
T ss_pred CeEEEEeCCCch-HHHHHHHHHHHHHHc--------CcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEEC-ChHHH
Confidence 367777765533 445567777777763 2222222244455677777888888876 58899974 34444
Q ss_pred HHHHHhhccCC------ccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 111 HLVSHIANEFQ------VPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 111 ~~va~~~~~~~------iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
..+...+...+ +.+|++.... +.....|.+..+..+...++...++++.
T Consensus 189 ~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 189 IGALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 44555555444 4467654332 2222235555666677778887777653
No 230
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=59.50 E-value=20 Score=34.59 Aligned_cols=83 Identities=8% Similarity=-0.096 Sum_probs=52.1
Q ss_pred HHcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHH
Q 006736 161 DYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEV 238 (633)
Q Consensus 161 ~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~i 238 (633)
+.-.-.+|+++..+ +.|.......+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...
T Consensus 59 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~ 134 (332)
T 2o20_A 59 ASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKI 134 (332)
T ss_dssp ---CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHH
T ss_pred hcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHH
Confidence 33345689998864 456667778888899999998765422 1 23344456677777788999998753211 134
Q ss_pred HHHHHHcCC
Q 006736 239 LNAAKHLRM 247 (633)
Q Consensus 239 l~~a~~~g~ 247 (633)
++.+.+.++
T Consensus 135 ~~~l~~~~i 143 (332)
T 2o20_A 135 RTSLKNSRT 143 (332)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 555555554
No 231
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=59.35 E-value=15 Score=34.13 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=54.7
Q ss_pred EEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEeeC-hHHHHHHHHHH
Q 006736 167 NVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTY-DIWGLEVLNAA 242 (633)
Q Consensus 167 ~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~-~~vIvl~~~-~~~~~~il~~a 242 (633)
+|+++..+ +.|.....+.+++.+++.|..+.....-. ..+.......++.+...+ +|.||+... .......++.+
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 57777754 55777778899999999999887542111 123344456677777777 999998763 34556677888
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 87765
No 232
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=59.29 E-value=21 Score=36.38 Aligned_cols=83 Identities=7% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh--
Q 006736 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-- 232 (633)
Q Consensus 155 al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-- 232 (633)
.+.++++.+|.+++.||++..... ...+.+.+.+++.|+.+.. ..+..+.....+....+.+++ +.|+||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 356677777866999888654333 4678888889888988743 234433445567777777777 89999977554
Q ss_pred HHHHHHHH
Q 006736 233 IWGLEVLN 240 (633)
Q Consensus 233 ~~~~~il~ 240 (633)
-++..++.
T Consensus 158 iD~AK~iA 165 (450)
T 1ta9_A 158 MDSAKYIA 165 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666665
No 233
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=59.15 E-value=32 Score=33.27 Aligned_cols=78 Identities=8% Similarity=-0.066 Sum_probs=54.1
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~ 243 (633)
+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTD---YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 478888754 5677778889999999999988654321 234455667778888899999987543222 4566677
Q ss_pred HcCC
Q 006736 244 HLRM 247 (633)
Q Consensus 244 ~~g~ 247 (633)
+.++
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7664
No 234
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=59.11 E-value=21 Score=33.43 Aligned_cols=79 Identities=6% Similarity=0.027 Sum_probs=51.7
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
++|+++..+ +.|.....+.+++.+++.|..+.....- .+...-...++.+...++|.||+.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQ---NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 467888754 4566677788888898999987654321 233334556777777889998886433 3334566777
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 235
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=58.95 E-value=31 Score=32.23 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=27.6
Q ss_pred HHHHHHhcCceEEEcCCchhhHHHHHHhhccC-CccEEe
Q 006736 89 EALTLLENETVAIIGPQFSVIAHLVSHIANEF-QVPLLS 126 (633)
Q Consensus 89 ~~~~li~~~v~aviG~~~s~~~~~va~~~~~~-~iP~Is 126 (633)
.+..|.+.|+.+|+-+-++.++.++..+-+.. ++|+|.
T Consensus 61 ~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 61 TAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 34445556999999876666665666666777 899997
No 236
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=58.76 E-value=23 Score=33.33 Aligned_cols=79 Identities=10% Similarity=-0.050 Sum_probs=52.5
Q ss_pred CcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHH
Q 006736 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAA 242 (633)
Q Consensus 165 w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a 242 (633)
-++|+++..+ +.|.......+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.+
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l 91 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-D--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEF 91 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHH
Confidence 4688988864 456667778888899999998765421 1 23344556777777788999998753221 2345666
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.++
T Consensus 92 ~~~~i 96 (289)
T 2fep_A 92 KRSPV 96 (289)
T ss_dssp HHSSS
T ss_pred HhcCC
Confidence 66554
No 237
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=58.55 E-value=14 Score=34.89 Aligned_cols=81 Identities=10% Similarity=-0.005 Sum_probs=55.9
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a 242 (633)
.+|+++..+ +.|.....+.+++.+++.|+.+.....-.. .+.......++.+...++|.||+... .......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 468888754 567777788899999999998875432110 13445567778888889999998643 34446677788
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 77665
No 238
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=58.44 E-value=20 Score=31.82 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=58.1
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. . ....+-..++..+.++.- .+++++.. .+...++..|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~------------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD--I------------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH--H------------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH--H------------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4678988862 1 112456678888888772 24577766 568899999999999999853
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
. +.....+.+ .|+....+.++++++.
T Consensus 65 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 L---PELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp C---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred C---CCCCcceeE-EEeeeccEEEEEcCCC
Confidence 2 222233443 6888899999998876
No 239
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=58.41 E-value=17 Score=35.77 Aligned_cols=84 Identities=8% Similarity=-0.004 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 232 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~- 232 (633)
..+.++++++|.+|+.||++.... ...+.+.+.+++.++.+ .....++.+.+.....++.+++.++|+||-.+.+
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~--f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 100 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV--YAGAVMHVPIESARDATARAREAGADCAVAVGGGS 100 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE--ECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE--ecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcH
Confidence 346778888999999999865443 34677888887765432 2223333455677777888888899999987655
Q ss_pred -HHHHHHHHH
Q 006736 233 -IWGLEVLNA 241 (633)
Q Consensus 233 -~~~~~il~~ 241 (633)
-++.+++..
T Consensus 101 viD~aK~iA~ 110 (358)
T 3jzd_A 101 TTGLGKAIAL 110 (358)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 466666654
No 240
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=57.92 E-value=26 Score=34.11 Aligned_cols=66 Identities=6% Similarity=-0.125 Sum_probs=42.9
Q ss_pred cCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 163 FGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 163 ~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
-.-..|+++..+ +.|.......+++.+++.|..+.....-. .+.......++.+...+.|.||+..
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVER--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCS--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCC--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 345688988864 34555677888888999999876543211 1223345667777778899988863
No 241
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=57.91 E-value=23 Score=34.72 Aligned_cols=84 Identities=8% Similarity=0.021 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 232 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~- 232 (633)
..+.++++++|.+|+.||++.... ...+.+.+.+++.++.+ ...+.++.+.+.+...++.+++.++|+||-.+.+
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v--~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 98 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV--FSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGS 98 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE--ECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE--ecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcH
Confidence 346778888999999988865432 35677888888765433 2223333455677888888888899999987655
Q ss_pred -HHHHHHHHH
Q 006736 233 -IWGLEVLNA 241 (633)
Q Consensus 233 -~~~~~il~~ 241 (633)
-++.+++..
T Consensus 99 ~iD~aK~iA~ 108 (353)
T 3hl0_A 99 TTGLGKAIAL 108 (353)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 466666554
No 242
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=57.74 E-value=70 Score=28.39 Aligned_cols=86 Identities=9% Similarity=-0.066 Sum_probs=57.2
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh----HHHHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNA 241 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il~~ 241 (633)
.+|.+.....+.-.-+...+...++.+|+++.+-.. .......+..+++.++++|.+.+.. ..+..+++.
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~------~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV------DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS------SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 467666655555556677888889999999874321 1234555666666789999997642 567888888
Q ss_pred HHHcCCCCCCeEEEEe
Q 006736 242 AKHLRMMESGYVWIVT 257 (633)
Q Consensus 242 a~~~g~~~~~~~~i~~ 257 (633)
+++.++...-.++++.
T Consensus 163 l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHTTCGGGCEEEEES
T ss_pred HHhcCCCCCCeEEEEC
Confidence 8887754323455553
No 243
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=57.65 E-value=24 Score=32.70 Aligned_cols=79 Identities=6% Similarity=-0.017 Sum_probs=51.9
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
++|+++..+ +.|.....+.+++.+++.|..+.....- .+...-...++.+...+.|.||+.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQ---NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 468888754 4566677788888999999887654321 233334556777777889999986433 3333456777
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 244
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=57.46 E-value=12 Score=35.60 Aligned_cols=86 Identities=6% Similarity=-0.075 Sum_probs=54.1
Q ss_pred HHHHHcCCcEEEEEEec-------CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 158 DIVDYFGWRNVIALYVD-------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 158 ~ll~~~~w~~v~ii~~d-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
+-++.-.-++|+++..+ +.|.....+.+++.+++.|..+.... ...+.......++.+...+.|.||+..
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~ 91 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTV---SENSGDLYHEVKTMIQSKSVDGFILLY 91 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECC---CSSHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEe---CCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 33444456789998865 34666777888889999999876432 112233345677778888999999875
Q ss_pred ChHHHHHHHHHHHHcCC
Q 006736 231 YDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 231 ~~~~~~~il~~a~~~g~ 247 (633)
.... ...++.+.+.|+
T Consensus 92 ~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 92 SLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp CBTT-CHHHHHHHHTTC
T ss_pred CcCC-cHHHHHHHHcCC
Confidence 4322 245667777664
No 245
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=57.09 E-value=21 Score=33.27 Aligned_cols=78 Identities=9% Similarity=-0.027 Sum_probs=52.0
Q ss_pred CCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHH-
Q 006736 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN- 240 (633)
Q Consensus 164 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~- 240 (633)
+-++|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+.... ...++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~ 80 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSD---NDIKKAQGYLATFVSHNCTGMISTAFN---ENIIEN 80 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHH
Confidence 34678888864 4566677888999999999987754322 244455677788888899999998633 23466
Q ss_pred HHHHcCC
Q 006736 241 AAKHLRM 247 (633)
Q Consensus 241 ~a~~~g~ 247 (633)
.+.+.|+
T Consensus 81 ~l~~~~i 87 (277)
T 3e61_A 81 TLTDHHI 87 (277)
T ss_dssp HHHHC-C
T ss_pred HHHcCCC
Confidence 6777664
No 246
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=56.86 E-value=22 Score=33.08 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=48.5
Q ss_pred eeHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecccc-ceeeeccceeecceEEEEe
Q 006736 498 YCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT-KMVDFTQPYIESGLVVVAP 575 (633)
Q Consensus 498 ~~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~-~~~~fs~p~~~~~~~~lv~ 575 (633)
+-.+++..+.++. + +++++.. ++...++..|.+|++|+++.......++. ..+. ..|+....+.++++
T Consensus 41 ~l~~~l~~f~~~~P~--i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~ 110 (290)
T 1twy_A 41 IMDVLAEKYNQQHPE--TYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVN 110 (290)
T ss_dssp HHHHHHHHHHHHCTT--CEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhhCCC--ceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEEC
Confidence 3456778888777 6 4467666 66889999999999999986433222110 2232 36788888889988
Q ss_pred cCC
Q 006736 576 IKK 578 (633)
Q Consensus 576 ~~~ 578 (633)
++.
T Consensus 111 ~~~ 113 (290)
T 1twy_A 111 QAN 113 (290)
T ss_dssp TTC
T ss_pred CCC
Confidence 765
No 247
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=56.36 E-value=53 Score=30.32 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 90 ALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 90 ~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
+..+.+.++.+|+-+-++.++..+..+-+..++|+|.
T Consensus 55 ~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 55 LDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 3344455899888766666544566666778999997
No 248
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=56.11 E-value=50 Score=28.28 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=47.6
Q ss_pred cCCcEEEEEEecCCCcc---hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeC
Q 006736 163 FGWRNVIALYVDDDHGR---NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (633)
Q Consensus 163 ~~w~~v~ii~~d~~~g~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~ 231 (633)
+.--+++||...++-|+ .....+.+.+++.|.++.....++ .+...+...+++..+ .+.|+||..+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK--DDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC--SSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34468999887655442 335678888889999988777776 456677888887765 37899988753
No 249
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=55.73 E-value=45 Score=28.86 Aligned_cols=67 Identities=9% Similarity=0.028 Sum_probs=47.2
Q ss_pred cCCcEEEEEEecCC----------CcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEeeC
Q 006736 163 FGWRNVIALYVDDD----------HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 231 (633)
Q Consensus 163 ~~w~~v~ii~~d~~----------~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~ 231 (633)
+.--+++||...|+ .-......+...+++.|.++.....++ .+...+...+++..+. +.|+||..+.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34568888886542 123445678888999999988777676 4566788888776654 5899998743
No 250
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=55.71 E-value=24 Score=35.49 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=55.0
Q ss_pred HHHHHHHcCCcEEEEEEecCCCcc-hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh--
Q 006736 156 IADIVDYFGWRNVIALYVDDDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-- 232 (633)
Q Consensus 156 l~~ll~~~~w~~v~ii~~d~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-- 232 (633)
+.++++ +| +|+.||+++..... ...+.+.+.++ |+++.......++.+.+.+...++.+++.++|+||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455566 67 89998885442322 25677777775 7775433334444566777888888888899999977554
Q ss_pred HHHHHHHHHH
Q 006736 233 IWGLEVLNAA 242 (633)
Q Consensus 233 ~~~~~il~~a 242 (633)
-++..++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5777776654
No 251
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=55.03 E-value=14 Score=33.94 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=51.3
Q ss_pred eeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecccc---ceeeeccceeecceEE
Q 006736 496 SGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT---KMVDFTQPYIESGLVV 572 (633)
Q Consensus 496 ~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~---~~~~fs~p~~~~~~~~ 572 (633)
.|+.-+|+..+.++.|.+ +++.. +....++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~--V~~~~-------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYK--VDVIA-------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCE--EEEEE-------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCce--EEEEE-------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 366677888898888855 55554 45778899999999999976533222111 1112347898999999
Q ss_pred EEecCC
Q 006736 573 VAPIKK 578 (633)
Q Consensus 573 lv~~~~ 578 (633)
++++++
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 998776
No 252
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=54.65 E-value=77 Score=28.37 Aligned_cols=87 Identities=7% Similarity=0.001 Sum_probs=57.8
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEE--eeCh----HHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILIL--HTYD----IWGLEVL 239 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl--~~~~----~~~~~il 239 (633)
.++.+.....+.-.-+...+...++.+|+++.+-.. .......++.+++.++|+|.+ .+.. .....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~------~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV------DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS------SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC------CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 466555545454455677788889999999874321 123466677888889999999 5443 3577788
Q ss_pred HHHHHcCCCCCCeEEEEeC
Q 006736 240 NAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 240 ~~a~~~g~~~~~~~~i~~~ 258 (633)
+++++.|+...-.+|++..
T Consensus 167 ~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHTTCGGGSEEEEESS
T ss_pred HHHHHcCCCCCCEEEEECC
Confidence 8888888642334565543
No 253
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=54.48 E-value=41 Score=32.15 Aligned_cols=81 Identities=5% Similarity=-0.054 Sum_probs=52.0
Q ss_pred CCcEEEEEEec-CCCcchhHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChH-HHHHHHH
Q 006736 164 GWRNVIALYVD-DDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDI-WGLEVLN 240 (633)
Q Consensus 164 ~w~~v~ii~~d-~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~-~~~~il~ 240 (633)
.-.+|+++..+ +.|.......+++.+++. |+.+..... . .+.......++.+...++|.||+..... .....++
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 81 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G--DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVE 81 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 34678888754 334445667788888888 988765432 1 2334445667777778899999875443 3345677
Q ss_pred HHHHcCC
Q 006736 241 AAKHLRM 247 (633)
Q Consensus 241 ~a~~~g~ 247 (633)
.+.+.++
T Consensus 82 ~~~~~~i 88 (325)
T 2x7x_A 82 EAYQKGI 88 (325)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 254
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=54.34 E-value=26 Score=33.34 Aligned_cols=79 Identities=6% Similarity=-0.103 Sum_probs=51.3
Q ss_pred EEEEEEecCC-CcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-hHHHHHHHHHHHH
Q 006736 167 NVIALYVDDD-HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-DIWGLEVLNAAKH 244 (633)
Q Consensus 167 ~v~ii~~d~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-~~~~~~il~~a~~ 244 (633)
+|+++..+.. |.....+.+++.+++.|..+.... ....+.......++.+...++|.||+... .......++.+.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777765322 666677888888888998876532 11123344556677777788999988644 3334456777777
Q ss_pred cCC
Q 006736 245 LRM 247 (633)
Q Consensus 245 ~g~ 247 (633)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 664
No 255
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=54.17 E-value=20 Score=33.70 Aligned_cols=80 Identities=6% Similarity=-0.071 Sum_probs=51.2
Q ss_pred CCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHH---HHHHhhcCCCeEEEEeeChHHHHHH
Q 006736 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIID---TLLTVSSMMSRILILHTYDIWGLEV 238 (633)
Q Consensus 164 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---~l~~i~~~~~~vIvl~~~~~~~~~i 238 (633)
.-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+...... .++.+...+.|.||+...... ...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 34678888754 456667778888899999998764321 1 12233345 677777788999998754322 345
Q ss_pred HHHHHHcCC
Q 006736 239 LNAAKHLRM 247 (633)
Q Consensus 239 l~~a~~~g~ 247 (633)
++.+.+.|+
T Consensus 83 ~~~l~~~~i 91 (290)
T 2rgy_A 83 LDELHRMHP 91 (290)
T ss_dssp HHHHHHHCS
T ss_pred HHHHhhcCC
Confidence 566666554
No 256
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=53.82 E-value=1.4e+02 Score=27.79 Aligned_cols=116 Identities=11% Similarity=0.052 Sum_probs=68.2
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-----CceEEEcCCc
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-----ETVAIIGPQF 106 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-----~v~aviG~~~ 106 (633)
=+||++.... ......-..|++.|+++. |.++.+ .....+...+.+.+.+++.. .+.+|+. .+
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~~ 200 (295)
T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQF--------NLDYQI--IETSNEREVILNYMQNLHTRLKDPNIKQAIIS-LD 200 (295)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHT--------TCEEEE--EEECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-SS
T ss_pred ccEEEEcCCccchhHHHHHHHHHHHHHHc--------CCCeeE--EeccCCHHHHHHHHHHHHhhcccCCCCcEEEE-CC
Confidence 4788876543 222344567777777663 344442 23344566666677777653 5889997 34
Q ss_pred hhhHHHHHHhhccCCc--c----EEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 107 SVIAHLVSHIANEFQV--P----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 107 s~~~~~va~~~~~~~i--P----~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
...+..+...+...++ | +|++... .+.....|-+-.+..+...+++..+++|.
T Consensus 201 d~~A~g~~~al~~~g~~vP~di~vig~D~~--~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 259 (295)
T 3hcw_A 201 AMLHLAILSVLYELNIEIPKDVMTATFNDS--YLTEIASPPQTCIDIKPRMLGQQAGSAIL 259 (295)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTEEEEEECCS--HHHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCh--hHHhhCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4455556666666553 3 5554322 12222335566677777888888888653
No 257
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=53.62 E-value=29 Score=33.46 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=51.4
Q ss_pred cEEEEEEec---CCCcchhHHHHHHHHhhcCcEEEEEeecCC-CCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHH
Q 006736 166 RNVIALYVD---DDHGRNGIAALGDKLAEKRCRLSHKVPLSP-KGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (633)
Q Consensus 166 ~~v~ii~~d---~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 241 (633)
.+|+++..+ +.|.......+++.+++.|..+........ ..+.......++.+...+.|.||+..........++.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 478888764 456667778888889999987654321111 0133344566777777889999985443333455666
Q ss_pred HHHcCC
Q 006736 242 AKHLRM 247 (633)
Q Consensus 242 a~~~g~ 247 (633)
+.+.+.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 666553
No 258
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=53.02 E-value=24 Score=33.12 Aligned_cols=81 Identities=5% Similarity=-0.003 Sum_probs=51.7
Q ss_pred cCCcEEEEEEec--C--CCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHH
Q 006736 163 FGWRNVIALYVD--D--DHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEV 238 (633)
Q Consensus 163 ~~w~~v~ii~~d--~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~i 238 (633)
-+-+.|+++..+ + .|.....+.+++.+++.|..+.....- .+..........+...+.|.||+...... ...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 81 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI---HAKDSMVPIRYILETGSADGVIISKIEPN-DPR 81 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS---SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHH
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC---cchhHHHHHHHHHHcCCccEEEEecCCCC-cHH
Confidence 345788988864 2 566777888999999999987754322 12223344555566678999988754322 245
Q ss_pred HHHHHHcCC
Q 006736 239 LNAAKHLRM 247 (633)
Q Consensus 239 l~~a~~~g~ 247 (633)
++.+.+.|+
T Consensus 82 ~~~l~~~~i 90 (288)
T 3gv0_A 82 VRFMTERNM 90 (288)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhCCC
Confidence 666776664
No 259
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=52.73 E-value=27 Score=33.55 Aligned_cols=79 Identities=8% Similarity=-0.045 Sum_probs=52.7
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC--CeEEEEeeChH-HHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM--SRILILHTYDI-WGLEVLN 240 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~--~~vIvl~~~~~-~~~~il~ 240 (633)
++|+++..+ +.|.......+++.+++.|+.+..... . .+.......++.+...+ .|.||+..... .....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT-E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC-T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC-C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 578888854 456666778888889999988765432 1 23344456677777777 99999875443 3446677
Q ss_pred HHHHcCC
Q 006736 241 AAKHLRM 247 (633)
Q Consensus 241 ~a~~~g~ 247 (633)
.+.+.++
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7776554
No 260
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=52.14 E-value=23 Score=33.19 Aligned_cols=51 Identities=10% Similarity=-0.099 Sum_probs=31.6
Q ss_pred CCHHhHHHHHHcCcccEEEeeeEeeccccceeeec--cceee-cceEEEEecCC
Q 006736 528 PKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFT--QPYIE-SGLVVVAPIKK 578 (633)
Q Consensus 528 ~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~~~~fs--~p~~~-~~~~~lv~~~~ 578 (633)
.++..+...|.+|++|+++.+......+.+.+++. .++.. ....+++++++
T Consensus 45 ~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~ 98 (280)
T 1zbm_A 45 EDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKSE 98 (280)
T ss_dssp CCHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESSC
T ss_pred CCHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcCc
Confidence 57999999999999999976433333333444443 23333 33445666553
No 261
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=51.53 E-value=48 Score=30.89 Aligned_cols=79 Identities=9% Similarity=-0.047 Sum_probs=51.5
Q ss_pred CCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHH
Q 006736 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (633)
Q Consensus 164 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 241 (633)
.-++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-E--SDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 44689988864 456667778888899999998765431 1 23334456677777788999998754322 134555
Q ss_pred HHHcCC
Q 006736 242 AKHLRM 247 (633)
Q Consensus 242 a~~~g~ 247 (633)
+. .++
T Consensus 83 l~-~~i 87 (285)
T 3c3k_A 83 II-GAF 87 (285)
T ss_dssp HH-TTS
T ss_pred Hh-cCC
Confidence 55 553
No 262
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=50.72 E-value=24 Score=33.46 Aligned_cols=79 Identities=10% Similarity=-0.022 Sum_probs=51.7
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHH-HHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIW-GLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~-~~~il~~a 242 (633)
.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...++|.||+...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 478888754 445666678888889999998765432 1 23344456677777778999988754322 24566667
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 263
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=50.60 E-value=36 Score=29.69 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=46.0
Q ss_pred CCcEEEEEEecCC--C--cchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 164 GWRNVIALYVDDD--H--GRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 164 ~w~~v~ii~~d~~--~--g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
.--+++||...|+ . -......+...+++.|.++.....++ .+...+...+++..+.+.|+||..+
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVE--ADEVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEEC--SCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECC
Confidence 3457888876432 1 23455678888999999988777776 4566777778776556789999874
No 264
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=50.52 E-value=24 Score=32.69 Aligned_cols=78 Identities=9% Similarity=-0.040 Sum_probs=50.5
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAK 243 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~ 243 (633)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS-D--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC-T--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC-C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 478888754 456667778888899999988764321 1 23344456677787788998888754322 24556666
Q ss_pred HcCC
Q 006736 244 HLRM 247 (633)
Q Consensus 244 ~~g~ 247 (633)
+.++
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6554
No 265
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=50.37 E-value=50 Score=30.99 Aligned_cols=72 Identities=7% Similarity=-0.101 Sum_probs=48.6
Q ss_pred HHHHHcCCcEEEEEEec--CCCcc-hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh
Q 006736 158 DIVDYFGWRNVIALYVD--DDHGR-NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD 232 (633)
Q Consensus 158 ~ll~~~~w~~v~ii~~d--~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~ 232 (633)
+-|+.-+-++|+++..+ +.|.. ...+.+++.+++.|..+.....- .+.......++.+...+.|.||+....
T Consensus 6 r~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 6 RLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG---GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp ------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 33444456789999865 35666 88899999999999988754321 234445677788888899999987543
No 266
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=49.52 E-value=32 Score=33.08 Aligned_cols=80 Identities=9% Similarity=-0.005 Sum_probs=51.2
Q ss_pred CCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHH
Q 006736 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNA 241 (633)
Q Consensus 164 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~ 241 (633)
.-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+....... ..++.
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 134 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEE 134 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-C--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHH
Confidence 34689988854 567777788899999999998765421 1 122334566777777889998887543222 44555
Q ss_pred HHHcCC
Q 006736 242 AKHLRM 247 (633)
Q Consensus 242 a~~~g~ 247 (633)
+.+.++
T Consensus 135 l~~~~i 140 (332)
T 2hsg_A 135 LKKSPV 140 (332)
T ss_dssp HTTSSS
T ss_pred HHhCCC
Confidence 555443
No 267
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=49.40 E-value=44 Score=28.42 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=44.2
Q ss_pred EEEEEEecCC-----CcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEeeC
Q 006736 167 NVIALYVDDD-----HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 231 (633)
Q Consensus 167 ~v~ii~~d~~-----~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~ 231 (633)
+++||...++ .-......+.+.+++.|.++.....++ .+...+...+++..+. +.|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVP--DEPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 6777765432 112345678888999999988777776 4566788888877664 6899998743
No 268
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=49.02 E-value=31 Score=32.09 Aligned_cols=69 Identities=6% Similarity=-0.002 Sum_probs=47.6
Q ss_pred HHHHcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcE-EEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 159 IVDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCR-LSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 159 ll~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
-|+.-+-++|+++..+ +.|.....+.+++.+++.|.. +..... . .+.......++.+...+.|.||+..
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFST-N--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECS-S--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeC-C--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 3444456789999865 456667788899999999998 654321 1 2444556677888888999999887
No 269
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=48.62 E-value=96 Score=28.35 Aligned_cols=93 Identities=8% Similarity=-0.074 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCcEEEEEEec------------CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC
Q 006736 154 AAIADIVDYFGWRNVIALYVD------------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM 221 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d------------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~ 221 (633)
...++.+++.|.+.|=+...+ ........+.+++.+++.|+.+........ .....+...+...+.-
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA-EKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC-SSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC-ccHHHHHHHHHHHHHc
Confidence 446677788899988875422 122344578899999999999875544321 3445677888888888
Q ss_pred CCeEEEEeeChHHHHHHHHHHHHcCC
Q 006736 222 MSRILILHTYDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 222 ~~~vIvl~~~~~~~~~il~~a~~~g~ 247 (633)
+++.|++.........+.+.|++.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 88888887666667777777777664
No 270
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=48.48 E-value=1.8e+02 Score=27.51 Aligned_cols=144 Identities=9% Similarity=-0.067 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHhcCceEE--EcCCchh-hHHHHHHhhccC-CccEEeeccCCCCCccCCCCceEEecCChHHHHHHHH
Q 006736 82 SRFLGMVEALTLLENETVAI--IGPQFSV-IAHLVSHIANEF-QVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIA 157 (633)
Q Consensus 82 ~~~~a~~~~~~li~~~v~av--iG~~~s~-~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~ 157 (633)
.+..+.+.+.++++.++.++ +.+..+. ....+...+..+ ++.+|.|.+.. +-... ....-..|..
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~G--ii~p~-~~~~~~~~~~-------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPG--VINPG-ECKIGIMPGH-------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCE--EEETT-TEEEESSCGG--------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCe--Eeccc-ccceeecccc--------
Confidence 45556666777777776653 3333332 234677888888 99999765531 11110 1111122211
Q ss_pred HHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCC-ChhhHHHHHHHhhc-CCCeEEEEeeCh---
Q 006736 158 DIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-SRNQIIDTLLTVSS-MMSRILILHTYD--- 232 (633)
Q Consensus 158 ~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~l~~i~~-~~~~vIvl~~~~--- 232 (633)
...--+|++|..... ....+.+.+.+.|+-+.....+--.. ...++.+.|+.+.+ .+.++|+++...
T Consensus 149 ----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~ 220 (305)
T 2fp4_A 149 ----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGN 220 (305)
T ss_dssp ----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSS
T ss_pred ----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCc
Confidence 134467998875543 44556677778887776665554222 14678888888765 589999999775
Q ss_pred --HHHHHHHHHHHH
Q 006736 233 --IWGLEVLNAAKH 244 (633)
Q Consensus 233 --~~~~~il~~a~~ 244 (633)
.+++++++++++
T Consensus 221 ~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 221 AEENAAEFLKQHNS 234 (305)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHH
Confidence 568999998765
No 271
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=48.32 E-value=1.9e+02 Score=27.52 Aligned_cols=133 Identities=16% Similarity=0.143 Sum_probs=76.8
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|...+ -+.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~--~~ 104 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKH--ET 104 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCH--HH
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCh--HH
Confidence 45788887654 35788999999985 56666665444433333333333444444345444322222 23
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC----CcEEEEEEecCCCcchhHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG----WRNVIALYVDDDHGRNGIAAL 185 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~----w~~v~ii~~d~~~g~~~~~~~ 185 (633)
+..++...++|+|.-+. + ..+ | .+++++++ +++| -.+|+++.+ +......+
T Consensus 105 ~~~lA~~~~vPVINag~-~-----~~H-------P-----tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~~va~Sl 162 (307)
T 3tpf_A 105 LLEFARYSKAPVINALS-E-----LYH-------P-----TQVLGDLFTIKEWNKMQNGIAKVAFIGD----SNNMCNSW 162 (307)
T ss_dssp HHHHHHHCSSCEEEEEC-S-----SCC-------H-----HHHHHHHHHHHHTTCCGGGCCEEEEESC----SSHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CcC-------c-----HHHHHHHHHHHHHhCCCCCCCEEEEEcC----CCccHHHH
Confidence 44566677899998432 1 112 1 35677764 3443 447887763 23466667
Q ss_pred HHHHhhcCcEEEEE
Q 006736 186 GDKLAEKRCRLSHK 199 (633)
Q Consensus 186 ~~~~~~~g~~v~~~ 199 (633)
...+...|.++...
T Consensus 163 ~~~~~~~G~~v~~~ 176 (307)
T 3tpf_A 163 LITAAILGFEISIA 176 (307)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 77777889887654
No 272
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=47.88 E-value=17 Score=34.66 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=29.8
Q ss_pred CCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEE
Q 006736 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAII 102 (633)
Q Consensus 30 ~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~avi 102 (633)
..+|+||+. ..+. .....++ +.+-+. |++++++.+++...+.++ +....+++-.
T Consensus 38 ~~~i~IG~~-~~~~----~~~~~~~---~~~~~~-----G~~Ve~~~f~~~~~~~~A------L~~G~iD~~~ 91 (295)
T 1p99_A 38 DKKVTIGVA-SNDT----KAWEKVK---ELAKKD-----DIDVEIKHFSDYNLPNKA------LNDGDIDMNA 91 (295)
T ss_dssp --CEEEEES-SSCC----HHHHHHH---HHHGGG-----TCCEEEEECSSTTSHHHH------HHTTSSSEEE
T ss_pred CCeEEEEEe-CCcH----HHHHHHH---HHHHHc-----CCeEEEEEeCChHHHHHH------HHcCCCCEEc
Confidence 457999998 3321 2222222 233332 688999998887666543 3444666543
No 273
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=47.83 E-value=1.4e+02 Score=29.50 Aligned_cols=88 Identities=13% Similarity=-0.027 Sum_probs=51.9
Q ss_pred CCcEEEEEEec-CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC------hHHHH
Q 006736 164 GWRNVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY------DIWGL 236 (633)
Q Consensus 164 ~w~~v~ii~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~------~~~~~ 236 (633)
..+++.++|.. .......++.+.+.+.+.|.++.... + ...+......++. +.|.||+.+. +..+.
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~-l----~~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k 327 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLE-M----TSSDITKVALHTY--DSGAVAFASPTLNNTMMPSVA 327 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-G----GGCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEE-c----CcCCHHHHHHHHH--hCCEEEEEcCccCcCchHHHH
Confidence 36799998854 33334556778888877787665332 2 1223444445554 5677887654 36788
Q ss_pred HHHHHHHHcCC-CCCCeEEEEeC
Q 006736 237 EVLNAAKHLRM-MESGYVWIVTD 258 (633)
Q Consensus 237 ~il~~a~~~g~-~~~~~~~i~~~ 258 (633)
.+++.+....+ .+.....+.+.
T Consensus 328 ~fld~l~~~~~~~~K~~~~~~t~ 350 (414)
T 2q9u_A 328 AALNYVRGLTLIKGKPAFAFGAF 350 (414)
T ss_dssp HHHHHHHHHTTTTTSBEEEEEEE
T ss_pred HHHHHHHhhcccCCCEEEEEEec
Confidence 88888776444 33333444443
No 274
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=47.70 E-value=23 Score=33.30 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=46.3
Q ss_pred CCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEE-eecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHH
Q 006736 164 GWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHK-VPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (633)
Q Consensus 164 ~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 240 (633)
.-++|+++..+ +.|.....+.+++.+++.|..+... ..- .+.......++.+...+.|.||+...... ...++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGS---ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 34678888753 5676777888899999999887653 211 12223345667777788999998754432 24456
Q ss_pred HHHHcCC
Q 006736 241 AAKHLRM 247 (633)
Q Consensus 241 ~a~~~g~ 247 (633)
.+.+.++
T Consensus 83 ~l~~~~i 89 (290)
T 3clk_A 83 LLQSSDV 89 (290)
T ss_dssp HHHCC--
T ss_pred HHHhCCC
Confidence 6665553
No 275
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=47.58 E-value=68 Score=26.97 Aligned_cols=77 Identities=9% Similarity=-0.038 Sum_probs=46.1
Q ss_pred cEEEEEEec-CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChh-hHHHHHHHhhcCCCeEEEEeeCh--HH--HHHHH
Q 006736 166 RNVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRN-QIIDTLLTVSSMMSRILILHTYD--IW--GLEVL 239 (633)
Q Consensus 166 ~~v~ii~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~l~~i~~~~~~vIvl~~~~--~~--~~~il 239 (633)
+++.|+|.. .......++.+.+.+++.|+.+... .+. .. +....+..+. +.|.||+.+.. .. ...++
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~-~~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~l 77 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVV-DLG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQGAL 77 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEE-ESS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEE-ECc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHHH
Confidence 588899854 3334456788888888888876533 222 23 4555555554 46778876543 11 24666
Q ss_pred HHHHHcCCCC
Q 006736 240 NAAKHLRMME 249 (633)
Q Consensus 240 ~~a~~~g~~~ 249 (633)
..+....+.+
T Consensus 78 ~~l~~~~~~~ 87 (159)
T 3fni_A 78 STILGSVNEK 87 (159)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHhhcccC
Confidence 6666555443
No 276
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=47.29 E-value=33 Score=32.28 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=52.9
Q ss_pred CCcEEEEEEe----c--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHH
Q 006736 164 GWRNVIALYV----D--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLE 237 (633)
Q Consensus 164 ~w~~v~ii~~----d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 237 (633)
+-++|+++.. + +.|.....+.+++.+++.|..+.....-. .......++.+...+.|.||+....... .
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~ 79 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-F 79 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-H
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-H
Confidence 4467898886 2 45666778888889999999877654322 2233556677777789999987543222 5
Q ss_pred HHHHHHHcCC
Q 006736 238 VLNAAKHLRM 247 (633)
Q Consensus 238 il~~a~~~g~ 247 (633)
.++.+.+.|+
T Consensus 80 ~~~~l~~~~i 89 (294)
T 3qk7_A 80 RLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 5666777664
No 277
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=47.16 E-value=62 Score=28.85 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=57.3
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. .+..++...|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASD--DT------------ADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECH--HH------------HTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccc--hh------------hHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 3679998863 11 12455678888887772 24577776 678999999999999999864
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
... .. --+.++....+.++++++.
T Consensus 84 ~~~-----~~-~~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AKV-----DS-HPHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SCC------C-CCEEEEEEECEEEEEETTC
T ss_pred cCC-----CC-cceEEeecCCEEEEEcCCC
Confidence 321 11 2257888889999998776
No 278
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=46.32 E-value=76 Score=31.45 Aligned_cols=95 Identities=9% Similarity=-0.056 Sum_probs=60.7
Q ss_pred HHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCC---CCChhhHHHHHHHhhcCCC---eEEEEeeCh
Q 006736 159 IVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSP---KGSRNQIIDTLLTVSSMMS---RILILHTYD 232 (633)
Q Consensus 159 ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~~l~~i~~~~~---~vIvl~~~~ 232 (633)
+++.++.+++.||++...+. ...+.+.+.+++.|+.+.... ++. +.+...+...++.+++.+. ++||..+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 44555779999998766543 367888899999998765322 221 1345567777777777665 688877554
Q ss_pred --HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 233 --IWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 233 --~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
.++..++.+....| ..++-|.|.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 56676665555444 334445554
No 279
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=46.24 E-value=56 Score=30.32 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=56.9
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. .+...++..|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFG--TP------------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECS--GG------------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEcc--ch------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 4679999873 11 12455677888888763 25577776 567889999999999999864
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
... ....+. +.|.....+.++++++.
T Consensus 148 ~~~---~~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 148 FFP---RHPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCC---CCTTEE-EEEEEEEEEEEEEEGGG
T ss_pred cCC---CCCCce-EEEEeeccEEEEEeCCC
Confidence 322 122222 36777888888887654
No 280
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=46.12 E-value=2e+02 Score=27.29 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=69.9
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-ceEEEcCCchhh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENE-TVAIIGPQFSVI 109 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~-v~aviG~~~s~~ 109 (633)
-=+||++.... ......-..|+..++++. |.+ .+......+...+.+.+.+++..+ +.+|+. .+...
T Consensus 174 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~ 242 (333)
T 3jvd_A 174 GMNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIV-ASPRL 242 (333)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEE-CCHHH
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHH
Confidence 34688876553 223344567777777663 233 222214456777777888888764 788887 34445
Q ss_pred HHHHHHhhccCCc------cEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 110 AHLVSHIANEFQV------PLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 110 ~~~va~~~~~~~i------P~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
+..+...+...++ .++++.... +.....|-+-.+..+...++...+++|.
T Consensus 243 A~g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 243 MAGVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 5555566655543 366653322 3333346666677778888888888754
No 281
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=46.00 E-value=70 Score=27.52 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=42.9
Q ss_pred EEEEEEecCC-------Cc---chhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeC
Q 006736 167 NVIALYVDDD-------HG---RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (633)
Q Consensus 167 ~v~ii~~d~~-------~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~ 231 (633)
+++||...|. .| ......+.+.+++.|+++.....++ .+...+...+..... .+.|+|+..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~--Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 7888875431 01 1334678888999999998887777 455566776766543 56899998753
No 282
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=45.70 E-value=1.6e+02 Score=26.91 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=63.6
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc---CceEEEcCCchh
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN---ETVAIIGPQFSV 108 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~---~v~aviG~~~s~ 108 (633)
=+|+++.... ......-..|++.++++. |.++. +.....+...+.+.+.+++.. .+.+|+.. +..
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~ 187 (277)
T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-NDE 187 (277)
T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-SHH
T ss_pred ceEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-ChH
Confidence 3577776543 222334467777777662 23333 233344666677777888765 68899973 444
Q ss_pred hHHHHHHhhccCCc--c----EEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 109 IAHLVSHIANEFQV--P----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 109 ~~~~va~~~~~~~i--P----~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
.+..+...+...++ | ++++.... +.....|.+-.+..+...++...++++.
T Consensus 188 ~a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 244 (277)
T 3cs3_A 188 MAIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKII 244 (277)
T ss_dssp HHHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHHH
Confidence 45555666666653 4 44432211 1111124444555666677777777643
No 283
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=44.49 E-value=17 Score=33.65 Aligned_cols=86 Identities=10% Similarity=0.000 Sum_probs=51.0
Q ss_pred HHHHHHHHH-----HcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEE
Q 006736 153 MAAIADIVD-----YFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILI 227 (633)
Q Consensus 153 ~~al~~ll~-----~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIv 227 (633)
+..+++++. ...-++|.++..+. ....+.+.|++.|..+.....|.......+.......+...+.|+|
T Consensus 116 ~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v- 189 (254)
T 4es6_A 116 SEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGL- 189 (254)
T ss_dssp HHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEE-
T ss_pred HHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEE-
Confidence 566777654 34567888776543 2345778888899987655444321111111223334444567754
Q ss_pred EeeChHHHHHHHHHHHH
Q 006736 228 LHTYDIWGLEVLNAAKH 244 (633)
Q Consensus 228 l~~~~~~~~~il~~a~~ 244 (633)
++.++..+..+++.+.+
T Consensus 190 ~ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 190 VVSSGQGLQNLYQLAAA 206 (254)
T ss_dssp ECCSHHHHHHHHHHHGG
T ss_pred EEcCHHHHHHHHHHhhH
Confidence 47788888888877653
No 284
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=43.75 E-value=43 Score=28.53 Aligned_cols=62 Identities=6% Similarity=0.033 Sum_probs=43.2
Q ss_pred cEEEEEEecCC-----CcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 166 RNVIALYVDDD-----HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 166 ~~v~ii~~d~~-----~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
.+++||...|+ .-......+.+.+++.|.++.....++ .+ ..+...+++..+.+.|+||..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECC
Confidence 47888776432 112345678888889999987666666 45 6788888777655799999874
No 285
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=43.66 E-value=94 Score=24.32 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=43.7
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAK 243 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~ 243 (633)
.+|.++ +++. .....++..+++.|..+... . +....+..+.+..+|+|++... ..+...++++++
T Consensus 7 ~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 73 (132)
T 3lte_A 7 KRILVV-DDDQ---AMAAAIERVLKRDHWQVEIA---H------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLR 73 (132)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHHHTTCEEEEE---S------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHH
T ss_pred ccEEEE-ECCH---HHHHHHHHHHHHCCcEEEEe---C------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 455544 3433 34667778888888876522 1 3345566666778999999754 345677888888
Q ss_pred HcC
Q 006736 244 HLR 246 (633)
Q Consensus 244 ~~g 246 (633)
+..
T Consensus 74 ~~~ 76 (132)
T 3lte_A 74 QNK 76 (132)
T ss_dssp TTT
T ss_pred hcC
Confidence 755
No 286
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=43.51 E-value=86 Score=28.65 Aligned_cols=93 Identities=11% Similarity=-0.013 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 154 AAIADIVDYFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
...++.+++.|.+.|=+.... ........+.+++.+++.|+.+........ .....+...+...+.-+++.|++...
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p~ 111 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVPN 111 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecCC
Confidence 456777888999988865431 123345568899999999998765433221 24456677777777778888887666
Q ss_pred hHHHHHHHHHHHHcCC
Q 006736 232 DIWGLEVLNAAKHLRM 247 (633)
Q Consensus 232 ~~~~~~il~~a~~~g~ 247 (633)
......+.+.|++.|+
T Consensus 112 ~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 112 YELLPYVDKKVKEYDF 127 (257)
T ss_dssp GGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6777777788877665
No 287
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=43.39 E-value=40 Score=31.49 Aligned_cols=81 Identities=6% Similarity=-0.035 Sum_probs=50.5
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
++|+++..+ +.|.....+.+++.+++.|..+....... ..+...-...++.+...+.|.||+.... ......++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-EGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467887754 45666677788888888998776543101 1233344556777777789999886443 2223456677
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
.+.++
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 66554
No 288
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=43.14 E-value=25 Score=33.29 Aligned_cols=74 Identities=7% Similarity=0.110 Sum_probs=50.1
Q ss_pred eeeHHHHHHHHHH---C---CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeeccc--cceeee-cc-cee
Q 006736 497 GYCIDVFTAVLEL---L---PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTER--TKMVDF-TQ-PYI 566 (633)
Q Consensus 497 G~~vdl~~~ia~~---l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r--~~~~~f-s~-p~~ 566 (633)
.+-.+++..+.++ . + +++++.. ++...++..|.+|++|+++..-....+. .+.+.+ .. ++.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~--v~v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAP--FKVAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC-----CEEEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCC--eEEEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4566788888888 6 6 4477776 6799999999999999997532111111 011222 25 888
Q ss_pred ecceEEEEecCCC
Q 006736 567 ESGLVVVAPIKKL 579 (633)
Q Consensus 567 ~~~~~~lv~~~~~ 579 (633)
...++++++++.+
T Consensus 104 ~d~lvlv~~~~hp 116 (294)
T 3cvg_A 104 RDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEECTTCT
T ss_pred eccEEEEecCCCh
Confidence 8899999887653
No 289
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=43.10 E-value=33 Score=32.08 Aligned_cols=78 Identities=6% Similarity=-0.132 Sum_probs=49.7
Q ss_pred cEEEEEEec------CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHH
Q 006736 166 RNVIALYVD------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVL 239 (633)
Q Consensus 166 ~~v~ii~~d------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il 239 (633)
++|+++..+ +.|.....+.+++.+++.|..+..... ..+.......++.+...+.|.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF---SEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC---CSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC---CCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 467777644 356667788888999999988764321 1122333556777777889999987543221 455
Q ss_pred HHHHHcCC
Q 006736 240 NAAKHLRM 247 (633)
Q Consensus 240 ~~a~~~g~ 247 (633)
+.+.+.++
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66666554
No 290
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=43.01 E-value=57 Score=30.27 Aligned_cols=64 Identities=11% Similarity=-0.076 Sum_probs=44.3
Q ss_pred CcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 165 WRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 165 w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
-++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA-W--NNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC-C--CChHHHHHHHHHHHhCCCCEEEEEec
Confidence 4578888854 456666778888899999988765321 1 23444556677777788999988654
No 291
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=42.73 E-value=77 Score=28.06 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=56.1
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-..++..+.++.- .+++++.. .+...+...|.+|++|+++..
T Consensus 29 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 86 (238)
T 2hxr_A 29 RGSLRIAVTP--TF------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAF 86 (238)
T ss_dssp --CEEEEECH--HH------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEeech--hh------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEc
Confidence 3679999863 11 12455677888888773 25577776 568899999999999999864
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. .....+. +.++....+.++++++.
T Consensus 87 ~~---~~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 87 AP---VHSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp SS---CCCTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCcccce-eeeeccCcEEEEEcCCC
Confidence 22 1122233 36788888888888765
No 292
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=42.33 E-value=11 Score=36.52 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=19.1
Q ss_pred CchhhhHHHHHhh-hhhhccccccCCC-CCCCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEE
Q 006736 1 MTKIYLLALVVVY-NFCFSAGISMNGV-STIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTV 76 (633)
Q Consensus 1 Mk~~~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~ 76 (633)
|||+.++++++++ ++++++| |++.. ....++|+|..-. .......+-.++++++.. |++|+++.
T Consensus 4 Mkk~~~~~~~~~~~~~~~lag-C~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~f~~~~----gi~V~~~~ 69 (351)
T 4edp_A 4 MKKKILATLLTGLVLGTSLVG-CGKTEGAEAGKKLVVSTWG-------LNEDVLKETVFEPFAKEH----GVEIVLDI 69 (351)
T ss_dssp ---------------------------------CEEEEECC-------TTHHHHHHHTHHHHHHHH----TCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhe-eCCCCccCCCCeEEEEEcc-------CcHHHHHHHHHHHHHHHH----CCEEEEEe
Confidence 7776543333322 2223445 54432 2334577774331 112344455667777663 56777765
No 293
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=41.96 E-value=1.5e+02 Score=27.72 Aligned_cols=113 Identities=13% Similarity=0.028 Sum_probs=64.0
Q ss_pred eEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhh--
Q 006736 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVI-- 109 (633)
Q Consensus 32 ~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~-- 109 (633)
-=+||++...+...+.....+++.|+++. |.++......+ .....+++.++. .++.+|+.+.+...
T Consensus 140 ~~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g 207 (302)
T 2qh8_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVAS 207 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHHT
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHHH
Confidence 34788887554322344566777776652 45554433222 234445555665 47888887554422
Q ss_pred -HHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 110 -AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 110 -~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
..++.......++|++++... .+. .|-+.....+...+++..++++.
T Consensus 208 ~~~~l~~~~~~~~i~vig~d~~--~~~---~~~Lttv~~~~~~~G~~Aa~~l~ 255 (302)
T 2qh8_A 208 AIEGMIVAANQAKTPVFGAATS--YVE---RGAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp THHHHHHHHHHTTCCEEESSHH--HHH---TTCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEECCHH--HHh---CCcEEEEeCCHHHHHHHHHHHHH
Confidence 222344444579999986322 122 14556666777888888887653
No 294
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=41.75 E-value=3e+02 Score=28.03 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHhcCceEEEc-CCc-hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHH
Q 006736 82 SRFLGMVEALTLLENETVAIIG-PQF-SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADI 159 (633)
Q Consensus 82 ~~~~a~~~~~~li~~~v~aviG-~~~-s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~l 159 (633)
.+..+...+.+..+.|+.+||- ... -.....+..++..+++.+|.|.+ ..+.... +...+..
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc--G~~~~~~----~~~~f~~---------- 108 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC--GTSMIAG----TPLAFAN---------- 108 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC--CEEEETT----EEEESCC----------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc--cccccCC----ccccccC----------
Confidence 3445555666777776664442 222 22334567788889999998876 2111111 1111111
Q ss_pred HHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCC-----ChhhHHHHHHHhhc-CCCeEEEEeeCh-
Q 006736 160 VDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKG-----SRNQIIDTLLTVSS-MMSRILILHTYD- 232 (633)
Q Consensus 160 l~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~l~~i~~-~~~~vIvl~~~~- 232 (633)
.+.--+|++|..... ....+.+.+.+.|+-+.....+--.. ...++.+.+..+.+ .+.++|+++...
T Consensus 109 --~~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 109 --VMPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp --CCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred --CCCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 012358998875443 45556677778888777666554221 44568888888775 578999998853
Q ss_pred --HHHHHHHHHHHHcC
Q 006736 233 --IWGLEVLNAAKHLR 246 (633)
Q Consensus 233 --~~~~~il~~a~~~g 246 (633)
...+++++++++.+
T Consensus 183 ~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 183 AEAVRLKIVNAMKATG 198 (480)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhCC
Confidence 34478998887643
No 295
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=41.67 E-value=52 Score=30.74 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=55.5
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. .+...++..|.+|++|+++..
T Consensus 94 ~g~l~i~~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFE--TV------------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEG--GG------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEech--hh------------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 4689999873 11 12455677888888772 24566666 568999999999999999754
Q ss_pred eEeeccccceeeecccee-ecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYI-ESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~-~~~~~~lv~~~~ 578 (633)
.. .....+. ..++. ...+.++++++.
T Consensus 152 ~~---~~~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 152 EH---DLDSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp SS---SCCTTEE-EEESSCCBCCEEEEETTC
T ss_pred cc---ccccccc-eeeeeeccccEEEecCCC
Confidence 22 2222222 35555 667777777665
No 296
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=41.42 E-value=68 Score=29.76 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=67.1
Q ss_pred EEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CceEEEcCCchhh
Q 006736 33 LNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSVI 109 (633)
Q Consensus 33 i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aviG~~~s~~ 109 (633)
-+||++.... ......-..|++.++++.+-. .....+ .....+...+.+.+.+++.. .+.+|+.. +...
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~ 199 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKNGIK------ISENHI-IAAENSIHGGVDAAKKLMKLKNTPKALFCN-SDSI 199 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHTTCB------CCGGGE-EECCSSHHHHHHHHHHHTTSSSCCSEEEES-SHHH
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHcCCC------CChhhe-eccCCCHHHHHHHHHHHHcCCCCCcEEEEc-CCHH
Confidence 3567666543 222334467777777663211 110111 13344667777778888875 68899974 4445
Q ss_pred HHHHHHhhccCCc--c----EEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 110 AHLVSHIANEFQV--P----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 110 ~~~va~~~~~~~i--P----~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
+..+...+...++ | ++++...+..+.....|.+-.+..+...++...++++.
T Consensus 200 a~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 200 ALGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 5555556655543 3 77665212222222335556666777888888888754
No 297
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=40.97 E-value=2.7e+02 Score=27.25 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=50.7
Q ss_pred HHHHcCCcEEEEEEecCCCc--chhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-----
Q 006736 159 IVDYFGWRNVIALYVDDDHG--RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY----- 231 (633)
Q Consensus 159 ll~~~~w~~v~ii~~d~~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~----- 231 (633)
++....-+++.++|... +| ...++.+.+.+.+.|..+.... +. ..+.......+. +.|.|++.+.
T Consensus 246 ~~~~~~~~kv~i~y~S~-~Gnt~~lA~~i~~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~--~~d~ii~gsp~~~~~ 317 (402)
T 1e5d_A 246 YAEQKPTNKVVIFYDSM-WHSTEKMARVLAESFRDEGCTVKLMW-CK----ACHHSQIMSEIS--DAGAVIVGSPTHNNG 317 (402)
T ss_dssp HHHCCCCSEEEEEECCS-SSHHHHHHHHHHHHHHHTTCEEEEEE-TT----TSCHHHHHHHHH--TCSEEEEECCCBTTB
T ss_pred HhcCCCCCcEEEEEECC-ChhHHHHHHHHHHHHHhCCCeEEEEE-CC----CCCHHHHHHHHH--HCCEEEEECCccCCC
Confidence 33333357898888542 33 3446777777777787665332 22 234445555554 4677777653
Q ss_pred -hHHHHHHHHHHHHcCCCCCCeEEEE
Q 006736 232 -DIWGLEVLNAAKHLRMMESGYVWIV 256 (633)
Q Consensus 232 -~~~~~~il~~a~~~g~~~~~~~~i~ 256 (633)
...+..+++.+....+.+.....++
T Consensus 318 ~~~~~~~~l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 318 ILPYVAGTLQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp CCHHHHHHHHHHHHTCCCSCEEEEEE
T ss_pred chHHHHHHHHHhhhcccCCCEEEEEE
Confidence 2467778877776554443333343
No 298
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=40.62 E-value=70 Score=27.24 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=40.2
Q ss_pred EEEEEEecCC-----CcchhHHHHHHH----HhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 167 NVIALYVDDD-----HGRNGIAALGDK----LAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 167 ~v~ii~~d~~-----~g~~~~~~~~~~----~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
+++||...++ .-......+.+. +++.|+++.....++ .+...+...+++..+.+.|+||..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVP--EGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEEC--SSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 6777765432 112344567777 888899887776676 45667788888776656899988743
No 299
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=40.23 E-value=81 Score=31.07 Aligned_cols=97 Identities=9% Similarity=-0.021 Sum_probs=60.9
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCC---cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHH
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGW---RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLL 216 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w---~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~ 216 (633)
|.-+...+... ..+.++++.++. +++.+|++..... ..+.+.+++.|+.+.....+.++.+...+.+.++
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~ 100 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTA 100 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHH
Confidence 33344444432 336677777753 7787887543322 1366777777877654445555566677778888
Q ss_pred HhhcCC---CeEEEEeeCh--HHHHHHHHHHH
Q 006736 217 TVSSMM---SRILILHTYD--IWGLEVLNAAK 243 (633)
Q Consensus 217 ~i~~~~---~~vIvl~~~~--~~~~~il~~a~ 243 (633)
.+++.+ +|+||-.+.+ -++.+++....
T Consensus 101 ~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~ 132 (375)
T 3rf7_A 101 QVKAFNTKLPVSVVGLGGGSTMDLAKAVSLML 132 (375)
T ss_dssp HHHHHCSSCCSEEEEEESHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 787766 9999987655 46666665443
No 300
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=39.86 E-value=2.2e+02 Score=26.00 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=64.7
Q ss_pred eEEEEEEeecC-CccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CceEEEcCCchh
Q 006736 32 VLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGPQFSV 108 (633)
Q Consensus 32 ~i~IG~l~p~~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aviG~~~s~ 108 (633)
.=+|+++.... ......-..|++.++++. + ..+.-. .....+...+.+.+.+++.. .+.+|+.. +..
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~---g-----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~ 200 (289)
T 3brs_A 131 SGKIGVISFVKNSKTAMDREEGLKIGLSDD---S-----NKIEAI-YYCDSNYDKAYDGTVELLTKYPDISVMVGL-NQY 200 (289)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHGGG---G-----GGEEEE-EECTTCHHHHHHHHHHHHHHCTTEEEEEES-SHH
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhC---C-----CcEEee-ecCCCCHHHHHHHHHHHHHhCCCceEEEEC-CCc
Confidence 34777776542 222334466777666652 1 112111 22334666677777777765 58899974 334
Q ss_pred hHHHHHHhhccCC----ccEEeeccCCCCCccCCCCce-EEecCChHHHHHHHHHHHH
Q 006736 109 IAHLVSHIANEFQ----VPLLSFAATDPSLSSLQYPFF-VRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 109 ~~~~va~~~~~~~----iP~Is~~a~~~~ls~~~~~~~-~r~~p~~~~~~~al~~ll~ 161 (633)
.+..+...+...+ +.++++.........-..|.+ ..+..+...++...++++.
T Consensus 201 ~a~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~ 258 (289)
T 3brs_A 201 SATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKAL 258 (289)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHHH
Confidence 4445555555554 667876554321111111344 5555666777777777643
No 301
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=39.79 E-value=84 Score=27.70 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=57.4
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. .+...+...|.+|++|+++..
T Consensus 13 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTH--TQ------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeecc--ch------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 4679999863 11 12455678888888873 25577776 678999999999999999753
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. ......+. ..++....+.++++++.
T Consensus 71 ~~--~~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 71 ER--LSNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp SS--STTCTTEE-EEEEEEECEEEEEETTC
T ss_pred cc--cCCCCCce-EEEeeecceEEEecCCC
Confidence 21 11112233 36778888888887765
No 302
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=39.34 E-value=61 Score=28.79 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCC--CcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 153 MAAIADIVDYFGWRNVIALYVDDD--HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 153 ~~al~~ll~~~~w~~v~ii~~d~~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
...+.+++.+++-+++++|-.-.. ......+.+++.+++.|.++.... +.. .+..++ ...+. ++|.|++.+
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~-~~~~~~---~~~l~--~ad~I~l~G 87 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT-ESLGEI---TTKLR--KNDFIYVTG 87 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT-SCHHHH---HHHHH--HSSEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC-CChHHH---HHHHH--hCCEEEECC
Confidence 344555665566689998863211 123467888899999999866432 211 122333 33443 367788865
Q ss_pred ChHHHHHHHHHHHHcCCCC-------CCeEEEEeC
Q 006736 231 YDIWGLEVLNAAKHLRMME-------SGYVWIVTD 258 (633)
Q Consensus 231 ~~~~~~~il~~a~~~g~~~-------~~~~~i~~~ 258 (633)
. +...+++.+++.|+.. .+..+++++
T Consensus 88 G--~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 88 G--NTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp S--CHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred C--CHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 2 2223444444433321 234577766
No 303
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=39.15 E-value=1.3e+02 Score=23.20 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHHc
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHL 245 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 245 (633)
...+.+++.+++.|..+... . +....+..+.+..+|+|++... ..+...+++++++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE---C------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 35677888888888865532 1 3445666667778999999743 45677888888886
No 304
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=38.87 E-value=26 Score=35.24 Aligned_cols=89 Identities=8% Similarity=-0.123 Sum_probs=53.9
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCC-ccceEEEeCCCCCCCCCHHhHHHHHHcCc----cc
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPY-AVPYKLVPFGDGHNSPKRFDLLRLVSEEV----YD 543 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d 543 (633)
..+||||......+.|+..... +-+.++.|. + ++++.. .+|..++..|..|+ +|
T Consensus 32 ~~~l~ig~~~~~~~~p~~vA~~-------------~G~~~~~Gl~~--Ve~~~~------~~~~~~~~al~~G~~~~giD 90 (417)
T 2g29_A 32 VTTAKLGFIALTDAAPLIIAKE-------------KGFYAKYGMPD--VEVLKQ------ASWGTTRDNLVLGSASGGID 90 (417)
T ss_dssp CSCCEEEECSSGGGHHHHHHHH-------------TTHHHHTTCTT--CEEEEC------SCHHHHHHHHHHCGGGTSCS
T ss_pred CceEEEEeeccHhHHHHHHHHH-------------CCchHHcCCCe--eEEEec------CCHHHHHHHHHCCCCcCCcC
Confidence 3578999864333444432211 124566685 5 666663 47999999999999 99
Q ss_pred EEEeeeE----eecc---ccceeeeccce--eecceEEEEecCC
Q 006736 544 AAVGDFA----ITTE---RTKMVDFTQPY--IESGLVVVAPIKK 578 (633)
Q Consensus 544 ~~~~~~~----~~~~---r~~~~~fs~p~--~~~~~~~lv~~~~ 578 (633)
++..... .+.. |.+..++..+. ...+..++++++.
T Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~ 134 (417)
T 2g29_A 91 GAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNY 134 (417)
T ss_dssp EEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGG
T ss_pred eEeecchHHHHHHhCcccCCCCCCEEEEEEeccCCeEEEEecch
Confidence 9976322 2222 23344544332 3456788887765
No 305
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=38.74 E-value=60 Score=31.71 Aligned_cols=109 Identities=11% Similarity=-0.040 Sum_probs=58.6
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcC-cEEEEEeecCCCCChhhHHHHHHHh
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKR-CRLSHKVPLSPKGSRNQIIDTLLTV 218 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~~l~~i 218 (633)
|+-+...+... ..+.++++.+ +++.+|++...+.. ..+.+.+.+ +.| +.+........+.+...+...++.+
T Consensus 11 ~~~i~~G~g~l---~~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~ 83 (354)
T 1xah_A 11 NYPIYVEHGAI---KYIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYI 83 (354)
T ss_dssp CCEEEEETTGG---GHHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHH
T ss_pred CccEEEcCChH---HHHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHH
Confidence 55555555432 2244555555 88988886543322 566677777 667 3322111122224556777888888
Q ss_pred hcCCC---eEEEEeeCh--HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 219 SSMMS---RILILHTYD--IWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 219 ~~~~~---~vIvl~~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
++.+. |.||..+.+ .++..++......| ..++-|.|.
T Consensus 84 ~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rg---ip~i~IPTT 125 (354)
T 1xah_A 84 LSHHVTRNTAIIAVGGGATGDFAGFVAATLLRG---VHFIQVPTT 125 (354)
T ss_dssp HTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHcCCCCCceEEEECChHHHHHHHHHHHHhccC---CCEEEECCc
Confidence 88777 888877554 67777776655444 234445554
No 306
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=38.69 E-value=1.6e+02 Score=27.35 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=50.4
Q ss_pred HHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEee-c------cccceeeeccceeecceEE
Q 006736 500 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAIT-T------ERTKMVDFTQPYIESGLVV 572 (633)
Q Consensus 500 vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~-~------~r~~~~~fs~p~~~~~~~~ 572 (633)
..++..+.+++|++ ++..+ ++-.-++..|.+|++|+........ . .+.+......-+....+.+
T Consensus 32 ~~i~~~~Le~~G~~--Ve~~~-------~~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 102 (280)
T 3tmg_A 32 TNVLKVVFEKMGYN--AEIFS-------VTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGTIQGF 102 (280)
T ss_dssp HHHHHHHHHHTTEE--EEEEE-------CCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCc--eEEEE-------CCcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCceEEE
Confidence 45666777779955 66666 4457788999999999987643322 1 1122333333243456899
Q ss_pred EEecCCCCcCccccccCC
Q 006736 573 VAPIKKLNSNAWAFLNPF 590 (633)
Q Consensus 573 lv~~~~~~~~~~~~l~pf 590 (633)
+|++.. ..+..+.|+..
T Consensus 103 ~V~~~~-~i~sisDL~~~ 119 (280)
T 3tmg_A 103 VVPSYV-PISSISELKGK 119 (280)
T ss_dssp EEETTS-CCCBGGGGTTC
T ss_pred EECCCC-CCCCHHHHHhh
Confidence 999876 45555666553
No 307
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=38.62 E-value=1.1e+02 Score=30.29 Aligned_cols=94 Identities=12% Similarity=-0.030 Sum_probs=60.1
Q ss_pred HHHcCCcEEEEEEecCCCcchhHHHHHHHHhhc------CcEEEEEeecCC---CCChhhHHHHHHHhhcCC--C---eE
Q 006736 160 VDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK------RCRLSHKVPLSP---KGSRNQIIDTLLTVSSMM--S---RI 225 (633)
Q Consensus 160 l~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~------g~~v~~~~~~~~---~~~~~~~~~~l~~i~~~~--~---~v 225 (633)
++.++.+++.+|++...... ..+.+.+.+++. |+.+.. ..++. +.+...+....+.+++.+ . +.
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678889999986543322 566777777766 777643 23332 234456777777777777 6 88
Q ss_pred EEEeeCh--HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 226 LILHTYD--IWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 226 Ivl~~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
||..+.+ .++..++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 8877554 677777776665553 44555554
No 308
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=38.34 E-value=77 Score=29.87 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHHHHH-CCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeec-c------------ccceeeecccee
Q 006736 501 DVFTAVLEL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT-E------------RTKMVDFTQPYI 566 (633)
Q Consensus 501 dl~~~ia~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~------------r~~~~~fs~p~~ 566 (633)
.+.+.+.++ .| +++++.+. +....++..+.+|++|+++....... . +.+.+.+..++.
T Consensus 38 ~la~~~~~~~~g--~~v~v~~~------~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 109 (314)
T 1us5_A 38 GIAKLVNDANVG--IRANARST------GGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALY 109 (314)
T ss_dssp HHHHHHHHHTSS--EEEEEECC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEE
T ss_pred HHHHHHHhcCCC--ceEEEEec------CcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcC
Confidence 345555554 57 44666642 45788999999999999876432211 0 112344434677
Q ss_pred ecceEEEEecCC
Q 006736 567 ESGLVVVAPIKK 578 (633)
Q Consensus 567 ~~~~~~lv~~~~ 578 (633)
.....+++++++
T Consensus 110 ~~~~~lvv~~~~ 121 (314)
T 1us5_A 110 PEVVHVVARKDA 121 (314)
T ss_dssp EEEEEEEEETTS
T ss_pred cceEEEEEECCC
Confidence 778888888765
No 309
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.24 E-value=1.4e+02 Score=25.24 Aligned_cols=92 Identities=9% Similarity=-0.171 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEee--cCC--CCChhhHHHHHHHhh-cCCCeEEEEe
Q 006736 155 AIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVP--LSP--KGSRNQIIDTLLTVS-SMMSRILILH 229 (633)
Q Consensus 155 al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~--~~~--~~~~~~~~~~l~~i~-~~~~~vIvl~ 229 (633)
.+.+.+...+--..+..|.+ ..+......+++.+...|+++..... +.. ..+..|..-.+..+. ....|.+|+.
T Consensus 37 ~l~~~~~~~g~l~~~~~Y~~-~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLv 115 (165)
T 2qip_A 37 QFWYVATQEKEVVSAKAYAI-ASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILV 115 (165)
T ss_dssp HHHHHHTTTEEEEEEEEEEC-CCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEE
T ss_pred HHHHHHhcCCEEEEEEEEEc-cCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEE
Confidence 44455544443333445532 22224567788899999998764321 111 123445444433332 2468899999
Q ss_pred eChHHHHHHHHHHHHc-CC
Q 006736 230 TYDIWGLEVLNAAKHL-RM 247 (633)
Q Consensus 230 ~~~~~~~~il~~a~~~-g~ 247 (633)
+...+...+++.+++. |.
T Consensus 116 SgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 116 SGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp CCCGGGHHHHHHHHHHHCC
T ss_pred ECChhHHHHHHHHHHHcCc
Confidence 8888999999999994 73
No 310
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=37.35 E-value=29 Score=32.67 Aligned_cols=80 Identities=13% Similarity=-0.015 Sum_probs=52.4
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-HHHHHHHHHH
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-IWGLEVLNAA 242 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-~~~~~il~~a 242 (633)
.+|+++..+ +.|.....+.+++.+++.|..+.....-. ..+.......++.+...++|.||+.... ......++.+
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 578888864 45666777888899999999877543221 0133455667777777789999987543 3223456666
Q ss_pred HHcCC
Q 006736 243 KHLRM 247 (633)
Q Consensus 243 ~~~g~ 247 (633)
. .|+
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 5 554
No 311
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=37.20 E-value=78 Score=29.27 Aligned_cols=71 Identities=7% Similarity=-0.072 Sum_probs=48.2
Q ss_pred eeHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecc---ccceeeeccceeecceEEE
Q 006736 498 YCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTE---RTKMVDFTQPYIESGLVVV 573 (633)
Q Consensus 498 ~~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~---r~~~~~fs~p~~~~~~~~l 573 (633)
+.-+++..+.++. + +++.+.. +.....+.+|.+|++|+++....++.+ +...+ ...|+....++++
T Consensus 17 ~l~~~~~~f~~~~P~--v~i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLG--TFINVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTT--EEEEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCC--ceEEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 3445677777766 5 3455554 457889999999999999765433321 01122 2588999999999
Q ss_pred EecCC
Q 006736 574 APIKK 578 (633)
Q Consensus 574 v~~~~ 578 (633)
++.+.
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98765
No 312
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=37.06 E-value=2.5e+02 Score=25.88 Aligned_cols=112 Identities=15% Similarity=0.080 Sum_probs=61.7
Q ss_pred eEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhH-
Q 006736 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA- 110 (633)
Q Consensus 32 ~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~- 110 (633)
-=+||++...+...+.....+++.|+++. |.++......+ .....+++.++. .++.+|+.+.+....
T Consensus 133 ~~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g 200 (295)
T 3lft_A 133 VKTIGALYSSSEDNSKTQVEEFKAYAEKA--------GLTVETFAVPS---TNEIASTVTVMT-SKVDAIWVPIDNTIAS 200 (295)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEESS---GGGHHHHHHHHT-TTCSEEEECSCHHHHH
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---HHHHHHHHHHHH-hcCCEEEECCchhHHH
Confidence 35778876654322334456777776652 44544333222 223444555555 478888875543322
Q ss_pred --HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH
Q 006736 111 --HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (633)
Q Consensus 111 --~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll 160 (633)
.++.......++|++++... .+. .+-+.....+...+++..++++
T Consensus 201 ~~~~l~~~~~~~~i~vig~d~~--~~~---~~~Lttv~~~~~~~G~~Aa~~l 247 (295)
T 3lft_A 201 GFPTVVSSNQSSKKPIYPSATA--MVE---VGGLASVVIDQHDLGVATGKMI 247 (295)
T ss_dssp THHHHHHHTTTTCCCEEESSHH--HHT---TTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEeCCHH--HHh---cCcEEEEecCHHHHHHHHHHHH
Confidence 22334445678999986432 111 1345556677778888888765
No 313
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=36.85 E-value=77 Score=27.22 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=36.0
Q ss_pred EEEEEEecCC-----CcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 167 NVIALYVDDD-----HGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 167 ~v~ii~~d~~-----~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
+++||...++ .-......+.+.+++.|+.+.....++ .+...+...+++..+. .|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVM--DDLDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHH-CSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhc-CCEEEEcC
Confidence 5666664332 112345567777777888777666665 3455666666655432 67777654
No 314
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=36.59 E-value=90 Score=26.22 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=42.9
Q ss_pred EEEEEEec-CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-----HHHHHHHH
Q 006736 167 NVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD-----IWGLEVLN 240 (633)
Q Consensus 167 ~v~ii~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~-----~~~~~il~ 240 (633)
++.|+|.. .......++.+.+.+++.|+++... .+ ...+....+..+.+ .|.||+.+.. .. ..++.
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~-~~----~~~~~~~~~~~~~~--~d~ii~Gspty~g~~p~-~~fl~ 73 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMV-DL----RAVDPQELIEAVSS--ARGIVLGTPPSQPSEAV-ATALS 73 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEE-ET----TTCCHHHHHHHHHH--CSEEEEECCBSSCCHHH-HHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE-EC----CCCCHHHHHHHHHh--CCEEEEEcCCcCCchhH-HHHHH
Confidence 56788844 3334456788888888888875432 22 22344555555543 5667765432 22 56777
Q ss_pred HHHHcCCCC
Q 006736 241 AAKHLRMME 249 (633)
Q Consensus 241 ~a~~~g~~~ 249 (633)
......+.+
T Consensus 74 ~l~~~~l~g 82 (161)
T 3hly_A 74 TIFAAAHNK 82 (161)
T ss_dssp HHHHHCCTT
T ss_pred HHHhhhhCC
Confidence 766544443
No 315
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=36.41 E-value=1.5e+02 Score=28.53 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=63.4
Q ss_pred cCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE
Q 006736 146 TQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI 225 (633)
Q Consensus 146 ~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~v 225 (633)
.|+....++.+.++++..+.++|.|.+ |.+. ..+.+++.+...++.++ .+.+ + ..++....-..++.
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIAT-Da~~---~~~ELk~~L~~~~v~vv---~~~p--e----~a~ID~~I~~~A~~ 327 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVAS-DKDH---MIDEINEALKPYEIEAH---RQEP--D----DMYTSLAIMGRADL 327 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEE-SSCC---CHHHHHHHHGGGTCCEE---CCSS--C----CHHHHHHHHHHSSE
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEec-CCHH---HHHHHHHHhhccCceEE---EeCC--c----hhHHHHHHHHhCCE
Confidence 488898999999999999999998766 4332 47888888887777765 2332 1 34444444456888
Q ss_pred EEEeeChHHHHHHHHHHHHcC
Q 006736 226 LILHTYDIWGLEVLNAAKHLR 246 (633)
Q Consensus 226 Ivl~~~~~~~~~il~~a~~~g 246 (633)
.|--+.+.-...+.++=...|
T Consensus 328 FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 328 FVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp EEECTTCHHHHHHHHHHHHSS
T ss_pred eecCccccccHHHHHHHHhcC
Confidence 888888888887777766666
No 316
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=36.30 E-value=1e+02 Score=24.39 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=42.9
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAK 243 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~ 243 (633)
.+|.++ +++. .....++..+++.|..+... .+....+..+....+|+|++... ..+...+++.++
T Consensus 7 ~~iLiv-dd~~---~~~~~l~~~l~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~ 73 (140)
T 3grc_A 7 PRILIC-EDDP---DIARLLNLMLEKGGFDSDMV---------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALR 73 (140)
T ss_dssp SEEEEE-CSCH---HHHHHHHHHHHHTTCEEEEE---------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCEEEE-cCCH---HHHHHHHHHHHHCCCeEEEE---------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 456544 3433 35667778888888875422 13455666677778999999744 356677788777
Q ss_pred H
Q 006736 244 H 244 (633)
Q Consensus 244 ~ 244 (633)
+
T Consensus 74 ~ 74 (140)
T 3grc_A 74 R 74 (140)
T ss_dssp T
T ss_pred h
Confidence 6
No 317
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=36.23 E-value=68 Score=29.11 Aligned_cols=63 Identities=8% Similarity=-0.017 Sum_probs=43.5
Q ss_pred cEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 166 RNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 166 ~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-Q--FSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-C--CcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 468888754 456566778888889899988765432 1 23344456677787788999888754
No 318
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=36.22 E-value=2.6e+02 Score=25.97 Aligned_cols=87 Identities=15% Similarity=-0.013 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee---
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT--- 230 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~--- 230 (633)
..+++-....|-.-+.++.+...| ....+.++..-+.-++.|.....+. + .+ ++.+.+..++|.|++..
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f-~Gs~~~L~~ir~~v~lPVl~Kdfi~---d--~~--qi~ea~~~GAD~VlLi~a~L 153 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSF-QGAPEFLTAARQACSLPALRKDFLF---D--PY--QVYEARSWGADCILIIMASV 153 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTT-CCCHHHHHHHHHTSSSCEEEESCCC---S--TH--HHHHHHHTTCSEEEEETTTS
T ss_pred HHHHHHHHHCCCCEEEEecccccc-CCCHHHHHHHHHhcCCCEEECCccC---C--HH--HHHHHHHcCCCEEEEccccc
Confidence 446677777899999988754444 3455666555555566665433222 1 12 46677788999999975
Q ss_pred ChHHHHHHHHHHHHcCCC
Q 006736 231 YDIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 231 ~~~~~~~il~~a~~~g~~ 248 (633)
+..+...+++.++++||.
T Consensus 154 ~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 154 DDDLAKELEDTAFALGMD 171 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 346788999999999874
No 319
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.12 E-value=1.7e+02 Score=23.67 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=45.0
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAK 243 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~ 243 (633)
.+|.++ +|+. .....+++.+++.|..+... .+....+..+....+|+|++... ..+...+++.++
T Consensus 8 ~~ILiv-dd~~---~~~~~l~~~L~~~g~~v~~~---------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr 74 (154)
T 3gt7_A 8 GEILIV-EDSP---TQAEHLKHILEETGYQTEHV---------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLK 74 (154)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHHTTTCEEEEE---------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CcEEEE-eCCH---HHHHHHHHHHHHCCCEEEEe---------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 355444 3433 35677888888888776422 23456677777788999999754 346677788887
Q ss_pred HcC
Q 006736 244 HLR 246 (633)
Q Consensus 244 ~~g 246 (633)
+..
T Consensus 75 ~~~ 77 (154)
T 3gt7_A 75 GQP 77 (154)
T ss_dssp HST
T ss_pred hCC
Confidence 754
No 320
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=35.93 E-value=1.8e+02 Score=26.62 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=50.7
Q ss_pred eeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEee---c----cccceeeeccceeecce
Q 006736 498 YCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAIT---T----ERTKMVDFTQPYIESGL 570 (633)
Q Consensus 498 ~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~---~----~r~~~~~fs~p~~~~~~ 570 (633)
+...++..+.+..|++ ++..+ ++-.-++..|.+|++|+.......+ . ...+......-+....+
T Consensus 16 i~~~i~~~~Le~~G~~--Ve~~~-------~~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 86 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFD--VKTTA-------LDNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKV 86 (256)
T ss_dssp HHHHHHHHHHHHTTEE--EEEEE-------CCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCc--eEEEE-------CChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCCCceE
Confidence 3456778888888955 66666 4567889999999999987643322 0 01222333332344579
Q ss_pred EEEEecCCCCcCcccccc
Q 006736 571 VVVAPIKKLNSNAWAFLN 588 (633)
Q Consensus 571 ~~lv~~~~~~~~~~~~l~ 588 (633)
.++|++.. ..+..+.|+
T Consensus 87 ~l~Vp~~~-~i~si~DL~ 103 (256)
T 3l6g_A 87 GFVVPSYM-NVNSIEDLT 103 (256)
T ss_dssp EEEEETTS-CCCBGGGCS
T ss_pred EEEECCcc-CCCCHHHHH
Confidence 99999876 444444443
No 321
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=35.73 E-value=3.1e+02 Score=26.42 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=76.2
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|...+. +.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--... ...
T Consensus 64 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~--~~~ 131 (339)
T 4a8t_A 64 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER--HHS 131 (339)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSS--HHH
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc--HHH
Confidence 567888876543 5788999999985 5666666544443333333433344444434444432222 223
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHc--C----CcEEEEEEecCCCcchhHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF--G----WRNVIALYVDDDHGRNGIA 183 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~--~----w~~v~ii~~d~~~g~~~~~ 183 (633)
+..++...++|+|.-+ + +..+ | .+++++++ +++ | ..+|+++. |. .....
T Consensus 132 ~~~lA~~~~vPVINag--~----~~~H-------P-----tQaLaDl~Ti~e~~~~G~~l~glkva~vG-D~---~rva~ 189 (339)
T 4a8t_A 132 IVDLANCATIPVINGM--S----DYNH-------P-----TQELGDLCTMVEHLPEGKKLEDCKVVFVG-DA---TQVCF 189 (339)
T ss_dssp HHHHHHHCSSCEEECC--C----SSCC-------H-----HHHHHHHHHHHHTCCTTCCGGGCEEEEES-SC---CHHHH
T ss_pred HHHHHHhCCCCEEECC--C----CCcC-------c-----HHHHHHHHHHHHHhhcCCCCCCCEEEEEC-CC---chhHH
Confidence 3455667789999732 2 1122 2 35677764 455 4 25787765 32 34566
Q ss_pred HHHHHHhhcCcEEEEE
Q 006736 184 ALGDKLAEKRCRLSHK 199 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~ 199 (633)
.+...+...|.++...
T Consensus 190 Sl~~~~~~~G~~v~~~ 205 (339)
T 4a8t_A 190 SLGLITTKMGMNFVHF 205 (339)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 6667777889887654
No 322
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=35.69 E-value=47 Score=31.81 Aligned_cols=84 Identities=7% Similarity=-0.073 Sum_probs=48.1
Q ss_pred eeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHH--HHHHcCccc---EEEeee--Eeeccccceeee------
Q 006736 495 FSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEVYD---AAVGDF--AITTERTKMVDF------ 561 (633)
Q Consensus 495 ~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d---~~~~~~--~~~~~r~~~~~f------ 561 (633)
..-+.=.+.+.+.+.+|.+ +..... ....|.+ ..+.+++.| +.++.. .+++.+...+.|
T Consensus 31 ~D~~aR~la~~l~~~lg~~--vvV~N~------pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~df 102 (312)
T 2f5x_A 31 TDNVARSLAESMRPTLGET--VVVENK------GGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSF 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHSSC--EEEEEC------CCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSE
T ss_pred HHHHHHHHHHHHHHHhCCC--EEEEec------CChHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHHcCCCCCCccccc
Confidence 3344446778888889977 444431 2467777 457788888 765443 234444333333
Q ss_pred c--cceeecceEEEEecCCCCcCcccc
Q 006736 562 T--QPYIESGLVVVAPIKKLNSNAWAF 586 (633)
Q Consensus 562 s--~p~~~~~~~~lv~~~~~~~~~~~~ 586 (633)
+ -.+......++|+++++-.++..+
T Consensus 103 ~pv~~~~~~~~~lvv~~ds~~~sl~dL 129 (312)
T 2f5x_A 103 EPIGLVVDVPMTIIARGDFPPNNIKEL 129 (312)
T ss_dssp EEEEEEEEEEEEEEECTTCSCCSHHHH
T ss_pred ceeeecccCcEEEEEeCCCCCCCHHHH
Confidence 1 124556778888877643344333
No 323
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=35.32 E-value=3.2e+02 Score=26.49 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=81.3
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|...+. +.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~--~~ 109 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERH--HS 109 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSH--HH
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcH--HH
Confidence 567888876543 5788999999985 56777665545444444555555566666566665422222 23
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHc--C----CcEEEEEEecCCCcchhHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF--G----WRNVIALYVDDDHGRNGIA 183 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~--~----w~~v~ii~~d~~~g~~~~~ 183 (633)
+..++...++|+|.-+ + +..+ | .+++++++ +++ | ..+|+++. |. .....
T Consensus 110 ~~~lA~~~~vPVINag--~----~~~H-------P-----tQaLaDl~TI~E~~~~G~~l~glkva~vG-D~---~rva~ 167 (355)
T 4a8p_A 110 IVDLANCATIPVINGM--S----DYNH-------P-----TQELGDLCTMVEHLPEGKKLEDCKVVFVG-DA---TQVCF 167 (355)
T ss_dssp HHHHHHHCSSCEEECC--C----SSCC-------H-----HHHHHHHHHHHHTCCTTCCGGGCEEEEES-CC---CHHHH
T ss_pred HHHHHHhCCCCEEeCC--C----CCCC-------c-----HHHHHHHHHHHHHhhcCCCCCCCEEEEEC-CC---chhHH
Confidence 3455667789999732 2 1122 2 35677764 455 4 35787765 32 34556
Q ss_pred HHHHHHhhcCcEEEEE
Q 006736 184 ALGDKLAEKRCRLSHK 199 (633)
Q Consensus 184 ~~~~~~~~~g~~v~~~ 199 (633)
.+...+...|.++...
T Consensus 168 Sl~~~~~~~G~~v~~~ 183 (355)
T 4a8p_A 168 SLGLITTKMGMNFVHF 183 (355)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 6667777889887654
No 324
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=35.14 E-value=28 Score=34.17 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=42.9
Q ss_pred HHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeeccccceee-ec-ccee
Q 006736 501 DVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVD-FT-QPYI 566 (633)
Q Consensus 501 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~~~~-fs-~p~~ 566 (633)
.+.+.+.++.|-+++++..+.+ .-+++.+++..+..|.+|++.........+...+. |+ .||.
T Consensus 54 ~fa~~v~e~t~G~v~i~v~~~g---~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 54 KFTERVKELTDGQLEVQPFPAG---AVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHTTTSEEEEEECTT---SSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHhcCCeEEEEEeCCC---cccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 4678888888866667777621 11368999999999999999877655555544433 22 5553
No 325
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=34.91 E-value=1e+02 Score=29.49 Aligned_cols=67 Identities=10% Similarity=-0.100 Sum_probs=46.4
Q ss_pred HcCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 162 YFGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 162 ~~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
.-.-++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...
T Consensus 55 ~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 55 VNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA-W--NNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp HTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred cCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 3345689998854 456667778888899999998765321 1 23344456677777788999998653
No 326
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=34.48 E-value=27 Score=34.36 Aligned_cols=82 Identities=9% Similarity=-0.004 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 232 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~- 232 (633)
..+.++++++|.+|+.+|++....+ ..+.+.+.++ .. +.+. .+.++.+.+.+...++.+++.++|+||-.+.+
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~~-~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--VA-IWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--CS-EEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--CC-EEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 4567888889999999888654322 2344444443 11 2222 23334556778888888888999999987655
Q ss_pred -HHHHHHHHH
Q 006736 233 -IWGLEVLNA 241 (633)
Q Consensus 233 -~~~~~il~~ 241 (633)
-++.+++..
T Consensus 100 ~iD~aK~iA~ 109 (364)
T 3iv7_A 100 TIGLAKAIAM 109 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 466666544
No 327
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=34.35 E-value=3.1e+02 Score=26.14 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=74.8
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|...+ -+.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 49 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~--~~ 116 (323)
T 3gd5_A 49 KVLGLVFLKAS---TRTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQ--TE 116 (323)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSH--HH
T ss_pred CEEEEEecCCC---cchHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCh--hH
Confidence 46788887654 36788999999985 56666665544443334445555556666566666422222 23
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHc---CCcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF---GWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~---~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|.-+. + ..+ | .+++++++ +++ ...+|+++. |. ......+.
T Consensus 117 ~~~lA~~~~vPVINag~-~-----~~H-------P-----tQaLaDl~Ti~e~~g~l~glkva~vG-D~---~rva~Sl~ 174 (323)
T 3gd5_A 117 LEEYAHYAGIPVINALT-D-----HEH-------P-----CQVVADLLTIRENFGRLAGLKLAYVG-DG---NNVAHSLL 174 (323)
T ss_dssp HHHHHHHHCSCEEEEEC-S-----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEES-CC---CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CCC-------c-----HHHHHHHHHHHHHhCCCCCCEEEEEC-CC---CcHHHHHH
Confidence 34555667899998432 1 112 1 35677763 343 457888775 32 34455566
Q ss_pred HHHhhcCcEEEEE
Q 006736 187 DKLAEKRCRLSHK 199 (633)
Q Consensus 187 ~~~~~~g~~v~~~ 199 (633)
..+...|.++...
T Consensus 175 ~~~~~~G~~v~~~ 187 (323)
T 3gd5_A 175 LGCAKVGMSIAVA 187 (323)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 6777788887654
No 328
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=34.27 E-value=95 Score=28.14 Aligned_cols=55 Identities=5% Similarity=-0.047 Sum_probs=33.1
Q ss_pred HcCCcEEEEEEecCCCcchhHHHHHHHHhhcCc----EEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 162 YFGWRNVIALYVDDDHGRNGIAALGDKLAEKRC----RLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 162 ~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
.+.-++|+++. .. .....+++.+...|+ .+. .+ .+....++.+...+.|+++...
T Consensus 134 dL~g~~v~v~~-g~----~~~~~l~~~~~~~g~~~~~~~~---~~------~~~~~~~~~l~~G~vDa~~~~~ 192 (259)
T 4dz1_A 134 ELNKYSIGYPR-GM----AYSDLIKNDLEPKGYYSLSKVK---LY------PTYNETMADLKNGNLDLAFIEE 192 (259)
T ss_dssp GGGGSCEEEET-TS----THHHHHHHHTGGGTSCCGGGCE---EE------SSHHHHHHHHHHTSCSEEEEEH
T ss_pred HhCCCEEEEeC-Cc----HHHHHHHHhcccccccccceeE---ec------CCHHHHHHHHHcCCCCEEEecH
Confidence 34457888653 22 234556666666563 222 12 2456778888888899988874
No 329
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=34.13 E-value=80 Score=29.75 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=40.7
Q ss_pred EEEEecCCCChHHHHHH-HHHHHhc-CceEEEcCCchhhHHHHHHhhccCCccEEe
Q 006736 73 KLTVHDTNYSRFLGMVE-ALTLLEN-ETVAIIGPQFSVIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 73 ~~~~~D~~~~~~~a~~~-~~~li~~-~v~aviG~~~s~~~~~va~~~~~~~iP~Is 126 (633)
++.+.|+=|+....-+. +.++..+ .+..|||+..|+.+..+.++|...+.|..-
T Consensus 185 ~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~ 240 (297)
T 3dnf_A 185 EVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYH 240 (297)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEE
Confidence 34467877777665444 4555554 788899999999999999999999887643
No 330
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=33.70 E-value=2.8e+02 Score=25.37 Aligned_cols=84 Identities=11% Similarity=-0.100 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEee-cCCCCChhhHHHHHHHhhcCCCeEEEEeeC----hHHHHHHH
Q 006736 165 WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVP-LSPKGSRNQIIDTLLTVSSMMSRILILHTY----DIWGLEVL 239 (633)
Q Consensus 165 w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~----~~~~~~il 239 (633)
-.+|.+.....+.-.-+...+...++.+|+++.+-.. .+ ....+..+++.++++|.+.+. ...+..++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp-------~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP-------AEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC-------SHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC-------HHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHH
Confidence 3466666655555555677788889999999865432 22 234555666668999998763 35778888
Q ss_pred HHHHHcCCCCCCeEEEEe
Q 006736 240 NAAKHLRMMESGYVWIVT 257 (633)
Q Consensus 240 ~~a~~~g~~~~~~~~i~~ 257 (633)
+++++.+.. -.++++.
T Consensus 196 ~~l~~~~~~--~~v~vGG 211 (258)
T 2i2x_B 196 DMLLENGIK--IPFACGG 211 (258)
T ss_dssp HHHHTTTCC--CCEEEES
T ss_pred HHHHhcCCC--CcEEEEC
Confidence 888887754 2345554
No 331
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=33.62 E-value=61 Score=30.23 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=20.2
Q ss_pred hccccccCC--CCCCCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEE
Q 006736 17 FSAGISMNG--VSTIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTV 76 (633)
Q Consensus 17 ~~~~~~~~~--~~~~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~ 76 (633)
+++| |.+. .....++|+|.+-..+ ...++...+++.+.. ||.++++..
T Consensus 22 ~l~g-c~~~~~~~~~~~~i~i~GSss~--------~p~~~~~a~~f~~~~---p~v~v~~~~ 71 (279)
T 4gd5_A 22 AMVG-CNSGGSEAKSTNSVSISGSTSV--------GPVMEAEAEAFKTKK---PDVSIEINQ 71 (279)
T ss_dssp ----------------CEEEEEECTTT--------HHHHHHHHHHHHHHS---TTCEEEEEE
T ss_pred HHHH-ccCCCCcccCCCeEEEEEeCcH--------HHHHHHHHHHHHHHC---CCceEEEee
Confidence 3445 5443 2334567887653222 334444555555543 678888765
No 332
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=32.99 E-value=2.8e+02 Score=26.34 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=77.1
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|...+ -+.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~--~~ 113 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQ--DI 113 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCH--HH
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCH--HH
Confidence 46888887654 36789999999985 56666555444332223333333344444345555322222 23
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHc---CCcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF---GWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~---~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|.-+ ++ ..+| .+++++++ +++ ...+|+++.+ +......+.
T Consensus 114 ~~~lA~~~~vPVINag-~~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~~~va~Sl~ 171 (309)
T 4f2g_A 114 IQRFAENSRVPVINGL-TN-----EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----ANNMLYTWI 171 (309)
T ss_dssp HHHHHHTCSSCEEEEE-CS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----CCHHHHHHH
T ss_pred HHHHHHhCCCCEEECC-CC-----ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----CcchHHHHH
Confidence 4456667789999854 21 1221 35677763 344 4578888763 134666777
Q ss_pred HHHhhcCcEEEEE
Q 006736 187 DKLAEKRCRLSHK 199 (633)
Q Consensus 187 ~~~~~~g~~v~~~ 199 (633)
..+...|.++...
T Consensus 172 ~~~~~~G~~v~~~ 184 (309)
T 4f2g_A 172 QAARILDFKLQLS 184 (309)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 7777888877654
No 333
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=32.98 E-value=37 Score=32.56 Aligned_cols=82 Identities=11% Similarity=-0.002 Sum_probs=46.1
Q ss_pred eeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHH--HHHHcCccc---EEEee---eEeecccc-ceeee------
Q 006736 497 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEVYD---AAVGD---FAITTERT-KMVDF------ 561 (633)
Q Consensus 497 G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d---~~~~~---~~~~~~r~-~~~~f------ 561 (633)
-+.=-+.+.+.+.+|.++.++-.+ ...|.+ ..+.+++.| +.++. +.+++.+. ..+.|
T Consensus 35 ~~aR~la~~l~~~lg~~vvV~N~p--------Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~~~yd~~~df 106 (314)
T 2dvz_A 35 IIARLVTQRMSQELGQPMVVENKG--------GAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDF 106 (314)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECC--------CGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECC--------CchHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhCCCCCCCchhcc
Confidence 344456777788889774333332 356777 457888887 65543 23343333 33333
Q ss_pred c--cceeecceEEEEecCCCCcCcccc
Q 006736 562 T--QPYIESGLVVVAPIKKLNSNAWAF 586 (633)
Q Consensus 562 s--~p~~~~~~~~lv~~~~~~~~~~~~ 586 (633)
. ..+......++|+++++-.++..+
T Consensus 107 ~pv~~~~~~~~~lvv~~ds~~~tl~dL 133 (314)
T 2dvz_A 107 QPVTNFANTANVVAVNPKFPAKDFKGF 133 (314)
T ss_dssp EEEEEEEEECEEEEECTTSSCSSHHHH
T ss_pred ceeeEcccCCEEEEEeCCCCCCCHHHH
Confidence 1 125567788888877643333333
No 334
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=32.77 E-value=81 Score=30.40 Aligned_cols=90 Identities=8% Similarity=-0.059 Sum_probs=51.3
Q ss_pred eeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeE-eeccccceeeec---cceeecce
Q 006736 495 FSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFA-ITTERTKMVDFT---QPYIESGL 570 (633)
Q Consensus 495 ~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~-~~~~r~~~~~fs---~p~~~~~~ 570 (633)
+.|+-+-.-+-+.++-|.+ ++++.. .++..++..|.+|++|+++++.. ....|.+..+.. .-+.....
T Consensus 21 ~ap~~vA~~kG~f~e~GLd--Vei~~~------~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~ 92 (342)
T 4esw_A 21 HIPVYLANIKGYFKDENLD--IAILEP------SNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFT 92 (342)
T ss_dssp GHHHHHHHHTTHHHHTTCE--EEEEEE------SSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCE
T ss_pred hHHHHHHHHCCchHHcCCe--EEEEeC------CChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCcc
Confidence 4455443334445666755 666653 56889999999999999987643 233444433322 22223445
Q ss_pred EEEEecCCCCcCccccccCCch
Q 006736 571 VVVAPIKKLNSNAWAFLNPFTP 592 (633)
Q Consensus 571 ~~lv~~~~~~~~~~~~l~pf~~ 592 (633)
.+++++++...+....|+--..
T Consensus 93 ~~~~~~~~~~~~~~~dLkGK~i 114 (342)
T 4esw_A 93 GICYLEGSGITSDFQSLKGKRI 114 (342)
T ss_dssp EEEEETTSSCCSSGGGGTTCEE
T ss_pred cccccccccccCCHHHhCCCEE
Confidence 6666665544444555554444
No 335
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=32.61 E-value=1.5e+02 Score=28.47 Aligned_cols=76 Identities=11% Similarity=-0.055 Sum_probs=49.2
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHc
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~ 245 (633)
+++.+|+.-..-.....+.+.+.+++.|+.+.....-. ..+.....++....+.|.||.++.......+++.+.+.
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~----~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWE----KGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCS----TTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecC----cchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhhc
Confidence 67888873222111455678888888998776543321 22344445555455689999998888888888888753
No 336
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=32.46 E-value=3.3e+02 Score=25.76 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=78.6
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CceEEEcCCc-hhhH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN-ETVAIIGPQF-SVIA 110 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~v~aviG~~~-s~~~ 110 (633)
-.|+.+|...+. +.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++. ++++|+--.. ....
T Consensus 37 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~ 106 (304)
T 3r7f_A 37 KFAANLFFEPST---RTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYY 106 (304)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCH
T ss_pred CEEEEEecCCCh---hHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHH
Confidence 468888876543 5788999999985 67777775544443333444444455555 5666664222 2333
Q ss_pred HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHc---CCcEEEEEEecCCCcchhHHH
Q 006736 111 HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF---GWRNVIALYVDDDHGRNGIAA 184 (633)
Q Consensus 111 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~---~w~~v~ii~~d~~~g~~~~~~ 184 (633)
..+++..++|+|.-+.++ ..+ -.+++++++ +++ ...+|+++. |..++ .....
T Consensus 107 ---~~la~~~~vPVINagdg~-----~~H------------PtQaLaDl~Ti~e~~g~l~glkva~vG-D~~~~-rva~S 164 (304)
T 3r7f_A 107 ---EELVSQVNIPILNAGDGC-----GQH------------PTQSLLDLMTIYEEFNTFKGLTVSIHG-DIKHS-RVARS 164 (304)
T ss_dssp ---HHHHHHCSSCEEESCCTT-----SCC------------HHHHHHHHHHHHHHHSCCTTCEEEEES-CCTTC-HHHHH
T ss_pred ---HHHHHhCCCCEEeCCCCC-----CcC------------cHHHHHHHHHHHHHhCCCCCCEEEEEc-CCCCc-chHHH
Confidence 334556789999732111 112 135677763 343 456888776 32222 34555
Q ss_pred HHHHHhhcCcEEEEE
Q 006736 185 LGDKLAEKRCRLSHK 199 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~ 199 (633)
+...+...|.++...
T Consensus 165 l~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 165 NAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 667777889877654
No 337
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=32.30 E-value=79 Score=30.15 Aligned_cols=65 Identities=8% Similarity=-0.049 Sum_probs=43.8
Q ss_pred cCCcEEEEEEec--CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 163 FGWRNVIALYVD--DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 163 ~~w~~v~ii~~d--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
-.-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.|| ...
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI-~~~ 124 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT-D--DDKEKEKTYLEVLQSHRVAGII-ASR 124 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEE-EET
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC-C--CChHHHHHHHHHHHhCCCCEEE-ECC
Confidence 345689998864 445666778888889999998765432 1 2334445667777778899988 653
No 338
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=32.08 E-value=1.7e+02 Score=22.44 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHHcC
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHLR 246 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 246 (633)
....++..+++.|..+... .+....+..+....+|+|++... ..+...+++.+++..
T Consensus 14 ~~~~l~~~l~~~g~~v~~~---------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 14 LRKIVSFNLKKEGYEVIEA---------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHTTCEEEEE---------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHCCcEEEEe---------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 4566777788888776521 13345666777778999999744 345667777777643
No 339
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=32.02 E-value=3.3e+02 Score=27.88 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHH-HhcCceEEEcCCch-hhHHHHHHhhccCCccEEe
Q 006736 49 AKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTL-LENETVAIIGPQFS-VIAHLVSHIANEFQVPLLS 126 (633)
Q Consensus 49 ~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~l-i~~~v~aviG~~~s-~~~~~va~~~~~~~iP~Is 126 (633)
...-.+..++.+|+.+.+ +.+++..-.-.++..+.+.+.++ ..+++++||-...+ +.+..+...+...++|++-
T Consensus 27 v~~~~~~~~~~l~~~~~l----~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~~l~~l~~PvL~ 102 (500)
T 4f2d_A 27 VTQHAEHVVNALNTEAKL----PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ 102 (500)
T ss_dssp HHHHHHHHHHHHHHHTCC----SSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHHhccccCC----CeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHHHHHhcCCCEEE
Confidence 344446667888988533 34555555555677666666666 45688888875444 2334566788889999998
Q ss_pred ecc
Q 006736 127 FAA 129 (633)
Q Consensus 127 ~~a 129 (633)
+..
T Consensus 103 ~~~ 105 (500)
T 4f2d_A 103 FHT 105 (500)
T ss_dssp EEC
T ss_pred EeC
Confidence 643
No 340
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=31.78 E-value=1.4e+02 Score=25.91 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=45.1
Q ss_pred HcCCcEEEEEEecCC-----CcchhHHHHHHHHhh---cCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeC
Q 006736 162 YFGWRNVIALYVDDD-----HGRNGIAALGDKLAE---KRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (633)
Q Consensus 162 ~~~w~~v~ii~~d~~-----~g~~~~~~~~~~~~~---~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~ 231 (633)
-+.--+++||...++ .-......+.+.+++ .|.++.....++ .+...+...+++..+ .+.|+||..+.
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP--DEIEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeC--CCHHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 344457888876432 122345567788887 788888776676 456677788877654 37899988753
No 341
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=31.35 E-value=3.4e+02 Score=25.60 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=81.3
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~--~~ 113 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHL-------GGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRH--ET 113 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSH--HH
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCCh--HH
Confidence 56788886653 36789999999985 67777776655544444455555566666456555422222 23
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC---CcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|.-+ + +..+| .+++++++ +++| -.+|+++.+- ......+.
T Consensus 114 ~~~la~~~~vPVINa~-~-----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~ia~vGD~----~rva~Sl~ 171 (301)
T 2ef0_A 114 VEALARHAKVPVVNAL-S-----DRAHP------------LQALADLLTLKEVFGGLAGLEVAWVGDG----NNVLNSLL 171 (301)
T ss_dssp HHHHHHHCSSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC----CHHHHHHH
T ss_pred HHHHHHHCCCCEEeCC-C-----CccCc------------hHHHHHHHHHHHHhCCcCCcEEEEECCC----chhHHHHH
Confidence 3455566789999832 2 11222 35677764 3443 4678877632 34566666
Q ss_pred HHHhhcCcEEEEE
Q 006736 187 DKLAEKRCRLSHK 199 (633)
Q Consensus 187 ~~~~~~g~~v~~~ 199 (633)
..+...|.++...
T Consensus 172 ~~~~~~g~~v~~~ 184 (301)
T 2ef0_A 172 EVAPLAGLKVRVA 184 (301)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 7777889887654
No 342
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=31.28 E-value=3.1e+02 Score=26.75 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=44.8
Q ss_pred CCcEEEEEEec-CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC------hHHHH
Q 006736 164 GWRNVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY------DIWGL 236 (633)
Q Consensus 164 ~w~~v~ii~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~------~~~~~ 236 (633)
.-+++.++|.. .......++.+.+.+.+.|.++.... +. ..+.......+. +.|.||+.+. +..+.
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~-~~----~~~~~~~~~~l~--~~d~iiigsP~y~~~~~~~~k 327 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYC-LH----EDDRSEIVKDIL--ESGAIALGAPTIYDEPYPSVG 327 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEE-TT----TSCHHHHHHHHH--TCSEEEEECCEETTEECTHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEE-CC----CCCHHHHHHHHH--HCCEEEEECccccccchHHHH
Confidence 44688888844 23334556777778877787765332 22 223444445554 4677777654 25678
Q ss_pred HHHHHHHHc
Q 006736 237 EVLNAAKHL 245 (633)
Q Consensus 237 ~il~~a~~~ 245 (633)
.+++.+...
T Consensus 328 ~~ld~l~~~ 336 (404)
T 2ohh_A 328 DLLMYLRGL 336 (404)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 888777653
No 343
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=31.10 E-value=79 Score=29.32 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=44.5
Q ss_pred CCcEEEEEEec-CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 164 GWRNVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 164 ~w~~v~ii~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
.-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 72 (288)
T 2qu7_A 7 RSNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASS-E--ENEDKQQDLIETFVSQNVSAIILVPV 72 (288)
T ss_dssp CEEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEEC-T--TCHHHHHHHHHHHHHTTEEEEEECCS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCccEEEEecC
Confidence 34578888864 445566777888888899998765421 1 23344456677777788999988754
No 344
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.08 E-value=1.9e+02 Score=22.70 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=37.2
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHHc
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHL 245 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 245 (633)
....++..+++.|..+.. .. +....+..+....+|+|++... ..+...+++.+++.
T Consensus 16 ~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~ 73 (136)
T 3t6k_A 16 VAEMLELVLRGAGYEVRR---AA------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQH 73 (136)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEE---eC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 456777788888877652 21 3345566666678999999754 34566777777764
No 345
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=31.04 E-value=3.7e+02 Score=25.89 Aligned_cols=133 Identities=18% Similarity=0.154 Sum_probs=73.8
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|...+ -+.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~--~~ 138 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSH--AD 138 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCH--HH
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCh--hH
Confidence 46788886654 35788999999985 56666665444333222333333334443344444322222 23
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHc---CCcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYF---GWRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~---~w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|.-+ +. ..+ | .+++++++ +++ ...+|+++.+ . ......+.
T Consensus 139 ~~~lA~~~~vPVINag--~~----~~H-------P-----tQaLaDl~TI~E~~G~l~glkva~vGD-~---~nva~Sl~ 196 (340)
T 4ep1_A 139 VEELAKESSIPVINGL--TD----DHH-------P-----CQALADLMTIYEETNTFKGIKLAYVGD-G---NNVCHSLL 196 (340)
T ss_dssp HHHHHHHCSSCEEEEE--CS----SCC-------H-----HHHHHHHHHHHHHHSCCTTCEEEEESC-C---CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCC--CC----CCC-------c-----HHHHHHHHHHHHHhCCCCCCEEEEECC-C---chhHHHHH
Confidence 4456667789999842 21 112 2 35677763 344 3568887752 2 34566676
Q ss_pred HHHhhcCcEEEEE
Q 006736 187 DKLAEKRCRLSHK 199 (633)
Q Consensus 187 ~~~~~~g~~v~~~ 199 (633)
..+...|.++...
T Consensus 197 ~~~~~~G~~v~~~ 209 (340)
T 4ep1_A 197 LASAKVGMHMTVA 209 (340)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 7777788887654
No 346
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=30.75 E-value=1.7e+02 Score=29.68 Aligned_cols=144 Identities=9% Similarity=0.041 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHhcCceEEE--cCCch---h----hHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHH
Q 006736 82 SRFLGMVEALTLLENETVAII--GPQFS---V----IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQ 152 (633)
Q Consensus 82 ~~~~a~~~~~~li~~~v~avi--G~~~s---~----~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~ 152 (633)
.+......+.++++.++.+++ ....+ . ....+...+..+++.+|.+.+.. +-......-....|..
T Consensus 73 p~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G--v~~~~~~~~~~~~~~~--- 147 (457)
T 2csu_A 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG--IMNTHVDLNATFITVA--- 147 (457)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE--EEEGGGTEEEESSCCC---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce--EEccCCCceeeecCCC---
Confidence 455666667777777766443 22221 1 25567788899999999876542 2110001112222321
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeC
Q 006736 153 MAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (633)
Q Consensus 153 ~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~ 231 (633)
.. -+|++|.... .....+.+.+.+.|+-+.....+--. ...++.+.+..+.+ .+.++|+++..
T Consensus 148 ---------~~--G~v~~vsqSG----~~~~~~~~~~~~~g~G~s~~vs~G~~-~~~~~~d~l~~~~~D~~t~~I~l~~E 211 (457)
T 2csu_A 148 ---------KK--GNVAFISQSG----ALGAGIVYKTIKEDIGFSKFISVGNM-ADVDFAELMEYLADTEEDKAIALYIE 211 (457)
T ss_dssp ---------EE--CSEEEEESCH----HHHHHHHHHHHHTTCEESEEEECTTC-CSSCHHHHHHHHTTCSSCCEEEEEES
T ss_pred ---------CC--CCEEEEeCCH----HHHHHHHHHHHhcCCCeeEEEECCCc-CCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 11 5688887443 24555667778888877766666532 34578888888765 58999999998
Q ss_pred h-HHHHHHHHHHHHcC
Q 006736 232 D-IWGLEVLNAAKHLR 246 (633)
Q Consensus 232 ~-~~~~~il~~a~~~g 246 (633)
. .+.+.++++++...
T Consensus 212 ~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 212 GVRNGKKFMEVAKRVT 227 (457)
T ss_dssp CCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhc
Confidence 7 67888888888754
No 347
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.62 E-value=2.4e+02 Score=25.51 Aligned_cols=116 Identities=12% Similarity=-0.013 Sum_probs=62.7
Q ss_pred EEEEEEeecC-----Cccch-hHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CceEEEcC
Q 006736 33 LNIGAVFALN-----STIGK-VAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETVAIIGP 104 (633)
Q Consensus 33 i~IG~l~p~~-----~~~g~-~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~v~aviG~ 104 (633)
=+||++.... ..... .-..|++.++++.+ + + .....+. ....+...+.+.+.+++.. .+.+|+.
T Consensus 115 ~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g----~-~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~- 186 (276)
T 2h0a_A 115 PIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAG----R-P-FSPDRLY-ITRHSQEGGRLALRHFLEKASPPLNVFA- 186 (276)
T ss_dssp CEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTT----C-C-CCGGGEE-EECSSHHHHHHHHHHHHTTCCSSEEEEC-
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHHHHHcC----C-C-CChHHee-ecCCChHHHHHHHHHHHhCCCCCCEEEE-
Confidence 3888887654 23444 56778888877642 1 1 1101111 2233566666777778775 5899996
Q ss_pred CchhhHHHHHHhhccCC--cc----EEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH
Q 006736 105 QFSVIAHLVSHIANEFQ--VP----LLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV 160 (633)
Q Consensus 105 ~~s~~~~~va~~~~~~~--iP----~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll 160 (633)
.+...+..+...+...+ +| ++++.... .... .. +..+..+...++...++++
T Consensus 187 ~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~-~~-lttv~~~~~~~g~~a~~~l 244 (276)
T 2h0a_A 187 GADQVALGVLEEAVRLGLTPGRDVRVLGFDGHP--FAEE-AG-LSTIAQPVEAMGARAAQLL 244 (276)
T ss_dssp SSHHHHHHHHHHHHTTSCTTTTSEEEEEESCCT--HHHH-HT-CEEEECCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc--hhhh-cc-eeEecCCHHHHHHHHHHHH
Confidence 34445555556666554 34 56543322 2211 11 4445556666777766654
No 348
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=29.94 E-value=1.8e+02 Score=24.62 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=41.1
Q ss_pred cEEEEEEecCCC--c---chhHHHHHHHHhhc-----CcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeC
Q 006736 166 RNVIALYVDDDH--G---RNGIAALGDKLAEK-----RCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (633)
Q Consensus 166 ~~v~ii~~d~~~--g---~~~~~~~~~~~~~~-----g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~ 231 (633)
-+++||...++- | ......+.+.+++. |.++.....++ .+...+...+++..+ .+.|+||..+.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVP--DEVERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 477887754321 1 11223455666666 88887766666 456678888887764 47899988753
No 349
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=29.54 E-value=1.2e+02 Score=25.73 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 152 ~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
+++....|.++++.+++.++- |..-.....+.+...+.-.|+++... +-++....+.+-+..+.++++++-+
T Consensus 14 HGQV~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~ 85 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNVV-------SLEKAVAVYHNPQYQDETVFYLFTN 85 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhcccCCCceEEEEECC
Confidence 577888999999999997664 43322234444545444457776532 2234444454444467889999999
Q ss_pred hHHHHHHHH
Q 006736 232 DIWGLEVLN 240 (633)
Q Consensus 232 ~~~~~~il~ 240 (633)
+.++..+++
T Consensus 86 p~d~~~lve 94 (164)
T 1nrz_A 86 PHDVLTMVR 94 (164)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999887754
No 350
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=29.16 E-value=1.3e+02 Score=27.84 Aligned_cols=71 Identities=8% Similarity=-0.046 Sum_probs=46.4
Q ss_pred eHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeec-cccceee-eccceeecceEEEEe
Q 006736 499 CIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITT-ERTKMVD-FTQPYIESGLVVVAP 575 (633)
Q Consensus 499 ~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~r~~~~~-fs~p~~~~~~~~lv~ 575 (633)
.-.++..+.++. +.+ +.+.. +.....+.+|.+|++|+++....... +..+.-+ ...|+...+++++++
T Consensus 18 ~~~~~~~F~~~~P~v~--i~v~~-------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv~ 88 (265)
T 4exl_A 18 VEVAADEFGTIHVGKT--VNVQG-------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIVN 88 (265)
T ss_dssp HHHHHHHHHHHSTTCE--EEEEE-------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCce--EEEee-------CCcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEEC
Confidence 345666777766 644 55554 45889999999999999976432221 0111111 257899999999998
Q ss_pred cCC
Q 006736 576 IKK 578 (633)
Q Consensus 576 ~~~ 578 (633)
.+.
T Consensus 89 ~~~ 91 (265)
T 4exl_A 89 KEV 91 (265)
T ss_dssp TTC
T ss_pred CCC
Confidence 765
No 351
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=29.16 E-value=54 Score=30.02 Aligned_cols=73 Identities=12% Similarity=-0.063 Sum_probs=49.4
Q ss_pred eeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecccc---ceeeeccceeecceEEE
Q 006736 497 GYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERT---KMVDFTQPYIESGLVVV 573 (633)
Q Consensus 497 G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~---~~~~fs~p~~~~~~~~l 573 (633)
|+--+|...+.++.|.+ +++.. +.-..++.++.+|.+|+.+..-....+.. ....-..+|....++++
T Consensus 19 ~ll~eL~~~Fek~~gv~--V~~~~-------~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVLV 89 (242)
T 3kn3_A 19 GLLDVLAPAYKKDTGVD--LKWVA-------VGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVII 89 (242)
T ss_dssp THHHHHHHHHHHHHSCE--EEEEE-------ECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEEE
T ss_pred hHHHHHHHHHHHHhCCe--EEEEE-------cCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEEE
Confidence 55667888888888855 55554 45788999999999999976432211110 01122468889999999
Q ss_pred EecCC
Q 006736 574 APIKK 578 (633)
Q Consensus 574 v~~~~ 578 (633)
+++++
T Consensus 90 ~P~~~ 94 (242)
T 3kn3_A 90 GNPSF 94 (242)
T ss_dssp ECTHH
T ss_pred EeCCC
Confidence 98754
No 352
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=29.13 E-value=1.2e+02 Score=24.58 Aligned_cols=59 Identities=7% Similarity=0.053 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHHcC
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHLR 246 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g 246 (633)
.....++..+++.|..++..- .+-...+..+++..+|+|++... .-+...++++.++..
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~a--------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQEA--------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCcEEEEE--------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 345667777888887533211 12334555666667999998744 456667777777643
No 353
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.84 E-value=2.1e+02 Score=22.45 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=44.4
Q ss_pred EEEEEEecCCCcchhHHHHHHHHhh-cCcEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeC---hHHHHHHHHH
Q 006736 167 NVIALYVDDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY---DIWGLEVLNA 241 (633)
Q Consensus 167 ~v~ii~~d~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~---~~~~~~il~~ 241 (633)
+|.++ +|+. .....++..+++ .|..+... .+....+..+.+ ..+|+|++... ..+...+++.
T Consensus 6 ~iliv-dd~~---~~~~~l~~~L~~~~~~~v~~~---------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3lua_A 6 TVLLI-DYFE---YEREKTKIIFDNIGEYDFIEV---------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSA 72 (140)
T ss_dssp EEEEE-CSCH---HHHHHHHHHHHHHCCCEEEEE---------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHH
T ss_pred eEEEE-eCCH---HHHHHHHHHHHhccCccEEEE---------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHH
Confidence 55444 3443 356677788888 78876622 234566777877 88999999754 4577788888
Q ss_pred HHH
Q 006736 242 AKH 244 (633)
Q Consensus 242 a~~ 244 (633)
+++
T Consensus 73 l~~ 75 (140)
T 3lua_A 73 IRN 75 (140)
T ss_dssp HHH
T ss_pred HHh
Confidence 887
No 354
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=28.53 E-value=1.4e+02 Score=27.82 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=55.3
Q ss_pred eEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeE
Q 006736 471 HLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFA 550 (633)
Q Consensus 471 ~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 550 (633)
+|+||+.. .. ...+-.+++..+.+..- .+++++.. .+...++..|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (312)
T 2h9b_A 91 TIRIGFVG--SL------------LFGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLK 148 (312)
T ss_dssp EEEEEECG--GG------------GGTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSC
T ss_pred eEEEEech--hh------------hHhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCC
Confidence 68888863 11 12455677888887762 24577776 66889999999999999986432
Q ss_pred eeccccceeeeccceeecceEEEEecCC
Q 006736 551 ITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 551 ~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. ...+. +.++....+.++++++.
T Consensus 149 ~~---~~~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 149 IS---DPAIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCce-EEEeecceEEEEEcCCC
Confidence 21 12222 36778888888887754
No 355
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=28.50 E-value=2.6e+02 Score=23.37 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=25.3
Q ss_pred hhhHHHHHHHhhcCC--CeEEEEeeC------hHHHHHHHHHHHHcCC
Q 006736 208 RNQIIDTLLTVSSMM--SRILILHTY------DIWGLEVLNAAKHLRM 247 (633)
Q Consensus 208 ~~~~~~~l~~i~~~~--~~vIvl~~~------~~~~~~il~~a~~~g~ 247 (633)
...+..++..++... .|+||+.-- ..+...+++.+.+.|.
T Consensus 59 Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~gv 106 (167)
T 3guv_A 59 RIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYGV 106 (167)
T ss_dssp CHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCCC
Confidence 456777777777655 677776532 3566666777777553
No 356
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=28.36 E-value=16 Score=34.25 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=57.5
Q ss_pred ccEEeeccC-CCCCccCCCCceEEecCChHHHHHHHHHHHH-----HcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcE
Q 006736 122 VPLLSFAAT-DPSLSSLQYPFFVRTTQSDLYQMAAIADIVD-----YFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCR 195 (633)
Q Consensus 122 iP~Is~~a~-~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~-----~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~ 195 (633)
++++..+.. ...+...++.- ..++....+..+++++. ...-++|.++..+. ....+.+.|++.|..
T Consensus 95 ~~i~aVG~~Ta~aL~~~G~~~---~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~-----~r~~L~~~L~~~G~~ 166 (269)
T 3re1_A 95 QPWFSVGSATGQILLDYGLDA---SWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNE-----GRELLAEQLRERGVG 166 (269)
T ss_dssp SCEEESSHHHHHHHHHTTCCE---ECC-------CGGGCHHHHHHHCSSSCEEEEEECSS-----CCCHHHHHHHHTTCE
T ss_pred CEEEEECHHHHHHHHHcCCCc---ccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCc-----cHHHHHHHHHHCCCE
Confidence 566655432 33343333221 12333334667777654 34568888776543 234577888889988
Q ss_pred EEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHH
Q 006736 196 LSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKH 244 (633)
Q Consensus 196 v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~ 244 (633)
+.....|.......+.......+...+.|+ |++.++..+..+++.+.+
T Consensus 167 v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~-v~ftS~s~v~~~~~~~~~ 214 (269)
T 3re1_A 167 VDYLPLYRRYLPQHAPGTLLQRVEVERLNG-LVVSSGQGFEHLLQLAGD 214 (269)
T ss_dssp EEEEECEEEECCCCCTTTTHHHHHHTTCCE-EECSSHHHHTTTHHHHGG
T ss_pred EEEEeEEEEECCCCCHHHHHHHHHcCCCCE-EEEcCHHHHHHHHHHhhH
Confidence 765544432111111122223344456675 457778788777776543
No 357
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=28.28 E-value=3.5e+02 Score=24.86 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=53.8
Q ss_pred cEEEEEEecCCCcchhHHHHHHH--------Hhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh----
Q 006736 166 RNVIALYVDDDHGRNGIAALGDK--------LAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD---- 232 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~--------~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~---- 232 (633)
.+|.+-....+.-.-....+... ++.+ |+++.+--. .......+..+++.++|+|.+.+..
T Consensus 121 ~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~------~vp~e~iv~aa~e~~~d~VglS~l~t~~~ 194 (262)
T 1xrs_B 121 IVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS------QVANEDFIKKAVELEADVLLVSQTVTQKN 194 (262)
T ss_dssp EEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS------SBCHHHHHHHHHHTTCSEEEEECCCCTTS
T ss_pred CEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC------CCCHHHHHHHHHHcCCCEEEEEeecCCcc
Confidence 34433333333333445556656 8889 999874322 2334667777778899999997632
Q ss_pred ---HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 233 ---IWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 233 ---~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
.....+++++++.|+...-.++++..
T Consensus 195 ~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 195 VHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred chHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 45667788888888653334555543
No 358
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=28.27 E-value=2.8e+02 Score=27.08 Aligned_cols=109 Identities=11% Similarity=-0.033 Sum_probs=65.8
Q ss_pred CCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCC---CChhhHHHHH
Q 006736 139 YPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK---GSRNQIIDTL 215 (633)
Q Consensus 139 ~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~---~~~~~~~~~l 215 (633)
.||-+...+.... .+.++++.. +++.||++...+. ..+.+.+.+++.|+.+... .++.. .+...+...+
T Consensus 22 ~~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~ 93 (368)
T 3qbe_A 22 PPYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIW 93 (368)
T ss_dssp SCEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHH
T ss_pred CCceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHH
Confidence 3666666665432 345555543 8999898665443 3678889999999876533 23321 2334556666
Q ss_pred HHhhcC---CCeEEEEeeCh--HHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 216 LTVSSM---MSRILILHTYD--IWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 216 ~~i~~~---~~~vIvl~~~~--~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
+.+++. +.|.||..+.+ .++..++......|+ .++-|-|.
T Consensus 94 ~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 138 (368)
T 3qbe_A 94 EVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGV---SIVHLPTT 138 (368)
T ss_dssp HHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCC---cEEEECCC
Confidence 666543 46888887655 577777766555553 34444444
No 359
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=28.25 E-value=3.3e+02 Score=26.50 Aligned_cols=83 Identities=17% Similarity=0.045 Sum_probs=40.8
Q ss_pred HHHHcCCcEEEEEEec-CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC------
Q 006736 159 IVDYFGWRNVIALYVD-DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY------ 231 (633)
Q Consensus 159 ll~~~~w~~v~ii~~d-~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~------ 231 (633)
+.+...-.++.++|.. .......++.+.+.+.+.|.++.... + ...+.......+. +.|.|++.+.
T Consensus 245 ~~~~~~~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~-~----~~~~~~~~~~~~~--~~d~ii~g~p~y~~~~ 317 (398)
T 1ycg_A 245 WAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFK-L----SVSDRNDVIKEIL--DARAVLVGSPTINNDI 317 (398)
T ss_dssp HHHTCCCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE-G----GGSCHHHHHHHHH--HCSEEEEECCCBTTBC
T ss_pred HhccCCcCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEE-C----CCCCHHHHHHHHH--HCCEEEEECCccCccc
Confidence 3333334677777743 22223445666666666676554322 1 1223444444444 3455555542
Q ss_pred hHHHHHHHHHHHHcCCC
Q 006736 232 DIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 232 ~~~~~~il~~a~~~g~~ 248 (633)
+..+..+++.+....+.
T Consensus 318 ~~~~~~~l~~l~~~~~~ 334 (398)
T 1ycg_A 318 LPVVSPLLDDLVGLRPK 334 (398)
T ss_dssp CGGGHHHHHHHHHHCCS
T ss_pred hHHHHHHHHHHhccccC
Confidence 24566677766554333
No 360
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=28.21 E-value=1.6e+02 Score=22.58 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=38.4
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHHc
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHL 245 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 245 (633)
.....++..+++.|..+.. .. +....+..+....+|+|++... ..+...+++.+++.
T Consensus 13 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 13 PIADILEFNLRKEGYEVHC---AH------DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCEEEEE---eC------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3466777888888887652 21 3345566677778999999754 34667777777763
No 361
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=28.09 E-value=2.9e+02 Score=26.41 Aligned_cols=75 Identities=15% Similarity=-0.009 Sum_probs=50.3
Q ss_pred CcEEEEEEecCCCc----chhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHH
Q 006736 165 WRNVIALYVDDDHG----RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (633)
Q Consensus 165 w~~v~ii~~d~~~g----~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 240 (633)
-+++.+|+.- ..| ....+.++..+++.|+.+.....-. ..+.....+++...+.|.||.++.......+++
T Consensus 24 m~~i~vI~NP-~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~----~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~ 98 (337)
T 2qv7_A 24 RKRARIIYNP-TSGKEQFKRELPDALIKLEKAGYETSAYATEK----IGDATLEAERAMHENYDVLIAAGGDGTLNEVVN 98 (337)
T ss_dssp CEEEEEEECT-TSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS----TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHH
T ss_pred cceEEEEECC-CCCCCchHHHHHHHHHHHHHcCCeEEEEEecC----cchHHHHHHHHhhcCCCEEEEEcCchHHHHHHH
Confidence 3678888732 222 2345678888989998776543222 124455566666677899999988888888888
Q ss_pred HHHH
Q 006736 241 AAKH 244 (633)
Q Consensus 241 ~a~~ 244 (633)
.+.+
T Consensus 99 ~l~~ 102 (337)
T 2qv7_A 99 GIAE 102 (337)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7744
No 362
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.05 E-value=1.5e+02 Score=21.28 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHhhcCCCeE-EEEe-eChHHHHHHHHHHHHcCC
Q 006736 206 GSRNQIIDTLLTVSSMMSRI-LILH-TYDIWGLEVLNAAKHLRM 247 (633)
Q Consensus 206 ~~~~~~~~~l~~i~~~~~~v-Ivl~-~~~~~~~~il~~a~~~g~ 247 (633)
.+..|++++++.+++.+.-. +++- .+-.+...+-.+|++.|.
T Consensus 35 tssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegv 78 (112)
T 2lnd_A 35 TSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGV 78 (112)
T ss_dssp CSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTC
T ss_pred cchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCc
Confidence 35689999999999875444 4443 455788888888888774
No 363
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=27.99 E-value=60 Score=26.02 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=41.1
Q ss_pred EEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHHcCC
Q 006736 171 LYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHLRM 247 (633)
Q Consensus 171 i~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~g~ 247 (633)
|.+|+.. ....++..+++.|.++.. ...+-...+..+++..+|+|++... ..+...++++.++.+.
T Consensus 13 iVdD~~~---~~~~l~~~L~~~G~~v~~--------~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 13 VVEDESM---IAMLIEDTLCELGHEVAA--------TASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNV 80 (123)
T ss_dssp EESSSTT---TSHHHHHHHHHHCCCCCB--------CSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCC
T ss_pred EEeCCHH---HHHHHHHHHHHCCCEEEE--------EECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 4455543 455667778888876531 1224456677777789999999743 3455566677776553
No 364
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=27.50 E-value=3.1e+02 Score=25.06 Aligned_cols=86 Identities=13% Similarity=-0.004 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh-
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD- 232 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~- 232 (633)
..+++-.... -.=+.+++ |..|.....+.++..-+.-++.|.....+- ..+ ++.+.+..++|+|++.+..
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~-----~~~--qi~ea~~~GAD~ilLi~a~l 134 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYI-----DTV--QVKLASSVGADAILIIARIL 134 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCC-----STH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCC-----CHH--HHHHHHHcCCCEEEEecccC
Confidence 3455544444 56666665 555666666777665555566666443221 233 4566888999999998654
Q ss_pred --HHHHHHHHHHHHcCCC
Q 006736 233 --IWGLEVLNAAKHLRMM 248 (633)
Q Consensus 233 --~~~~~il~~a~~~g~~ 248 (633)
.+...+++.++++||.
T Consensus 135 ~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 135 TAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp CHHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHHHcCCe
Confidence 6889999999999874
No 365
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=27.45 E-value=25 Score=34.87 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=53.7
Q ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhh
Q 006736 140 PFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVS 219 (633)
Q Consensus 140 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~ 219 (633)
|+-+...+... ..+.++++.++ +++.||++...+.....+.+.+.+++.|+.+. .+..+.....+....+.++
T Consensus 20 p~~i~~G~g~l---~~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~---~~~ge~~~~~v~~~~~~~~ 92 (376)
T 1kq3_A 20 PGRYVQGAGAI---NILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQ---IFGGECSDEEIERLSGLVE 92 (376)
T ss_dssp CSEEEEETTGG---GGHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEE---ECCSSCBHHHHHHHHTTCC
T ss_pred CceEEECCCHH---HHHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEE---EeCCCCCHHHHHHHHHHHh
Confidence 44344444332 33566777778 99999985532221124455566666664332 2332334456677666777
Q ss_pred cCCCeEEEEeeCh--HHHHHHHH
Q 006736 220 SMMSRILILHTYD--IWGLEVLN 240 (633)
Q Consensus 220 ~~~~~vIvl~~~~--~~~~~il~ 240 (633)
+ ++|+||-.+.+ -++..++.
T Consensus 93 ~-~~d~IIavGGGsv~D~aK~iA 114 (376)
T 1kq3_A 93 E-ETDVVVGIGGGKTLDTAKAVA 114 (376)
T ss_dssp T-TCCEEEEEESHHHHHHHHHHH
T ss_pred c-CCCEEEEeCCcHHHHHHHHHH
Confidence 7 89999977554 56666665
No 366
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=27.20 E-value=1.6e+02 Score=25.22 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=41.1
Q ss_pred cEEEEEEecCC-----CcchhHHHHHHHHh---hcCcEEEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEeeC
Q 006736 166 RNVIALYVDDD-----HGRNGIAALGDKLA---EKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 231 (633)
Q Consensus 166 ~~v~ii~~d~~-----~g~~~~~~~~~~~~---~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~ 231 (633)
-+++||...++ .-......+.+.++ +.|.++ ....++ .+...+...+++..+. +.|+||..+.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~--Dd~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIP--DERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 37788775432 11223456777666 889988 555565 4566778888877653 7899998753
No 367
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=27.04 E-value=69 Score=30.68 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecccccee-eeccceeecceEEEEecCC
Q 006736 500 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMV-DFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 500 vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~~~-~fs~p~~~~~~~~lv~~~~ 578 (633)
-++++.+.+.-+.+ +.+.. +.....+.++.+|++|+++..-.++.+..+.. -...|+....++++++.+.
T Consensus 17 ~~~~~~f~~~p~v~--i~v~~-------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~~ 87 (321)
T 1ixh_A 17 AKWADTYQKETGNK--VNYQG-------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPG 87 (321)
T ss_dssp HHHHHHHHHHHCCE--EEEEE-------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCTT
T ss_pred HHHHHHHHhcCCce--EEEec-------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCCC
Confidence 34555665533544 56555 56889999999999999987765554432100 1247899999999998765
No 368
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=26.87 E-value=4.2e+02 Score=25.23 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=77.0
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 47 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~--~~ 114 (321)
T 1oth_A 47 KSLGMIFEKRS---TRTRLSTETGFALL-------GGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQ--SD 114 (321)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCH--HH
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCCh--hH
Confidence 56788886654 35789999999985 56777766555443333334444444444344444322222 22
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC---CcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|.-+ + +..+| .++|++++ +++| -.+|+++.+- ......+.
T Consensus 115 ~~~lA~~~~vPVINa~--~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD~----~~va~Sl~ 172 (321)
T 1oth_A 115 LDTLAKEASIPIINGL--S----DLYHP------------IQILADYLTLQEHYSSLKGLTLSWIGDG----NNILHSIM 172 (321)
T ss_dssp HHHHHHHCSSCEEESC--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCS----SHHHHHHH
T ss_pred HHHHHHhCCCCEEcCC--C----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECCc----hhhHHHHH
Confidence 3455666789999832 1 22222 35677764 3443 4588877632 24566666
Q ss_pred HHHhhcCcEEEEE
Q 006736 187 DKLAEKRCRLSHK 199 (633)
Q Consensus 187 ~~~~~~g~~v~~~ 199 (633)
..+...|.++...
T Consensus 173 ~~~~~~G~~v~~~ 185 (321)
T 1oth_A 173 MSAAKFGMHLQAA 185 (321)
T ss_dssp TTTGGGTCEEEEE
T ss_pred HHHHHcCCeEEEE
Confidence 7777788887654
No 369
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=26.81 E-value=71 Score=30.33 Aligned_cols=86 Identities=13% Similarity=-0.020 Sum_probs=47.8
Q ss_pred CceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHH--HHHHcCccc---EEEeeeE-e-eccccceeee----
Q 006736 493 DKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLL--RLVSEEVYD---AAVGDFA-I-TTERTKMVDF---- 561 (633)
Q Consensus 493 ~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d---~~~~~~~-~-~~~r~~~~~f---- 561 (633)
|...-+.--+.+.+.+++|.+ +..... ....|.+ ..+.+++.| +.++... + ++.+.....|
T Consensus 20 G~~D~~aR~la~~l~~~lg~~--vvV~n~------~Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~ 91 (301)
T 2qpq_A 20 GGTDMLARLIGNYLTESLGQT--AVVENR------PGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKK 91 (301)
T ss_dssp SHHHHHHHHHHHHHHHGGGSC--EEEEEC------CTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCTTT
T ss_pred cHHHHHHHHHHHHHHHHhCCC--EEEEEC------CChhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccCCCCCchh
Confidence 334445556778888888876 444431 2466777 458888888 6554321 1 3333222323
Q ss_pred --c--cceeecceEEEEecCCCCcCcccc
Q 006736 562 --T--QPYIESGLVVVAPIKKLNSNAWAF 586 (633)
Q Consensus 562 --s--~p~~~~~~~~lv~~~~~~~~~~~~ 586 (633)
. -.+......++++++++-.++..+
T Consensus 92 d~~pv~~~~~~~~~lvv~~~s~~~sl~dL 120 (301)
T 2qpq_A 92 DFAAVINVAYVPSVFVVPAGSKYKTLGEL 120 (301)
T ss_dssp TEEEEEEEEEEEEEEEEETTCSCCSHHHH
T ss_pred cchhhhehhcCCeEEEEeCCCCCCCHHHH
Confidence 1 124556788888877643333333
No 370
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=26.55 E-value=1.5e+02 Score=27.42 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=57.0
Q ss_pred ceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeee
Q 006736 470 RHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 549 (633)
Q Consensus 470 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 549 (633)
++|+|++.. .. ...+-..++..+.++.- .+++++.. +....+...|.+|++|+++...
T Consensus 92 g~l~I~~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASP--AI------------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECH--HH------------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEech--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 579999863 11 12355677888888773 24577776 5678899999999999998643
Q ss_pred EeeccccceeeeccceeecceEEEEecCC
Q 006736 550 AITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 550 ~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.... ....+. +.|+....++++++++.
T Consensus 150 ~~~~-~~~~l~-~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHD-IDTDLE-AQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGG-SCTTEE-EEEEEECCEEEEEETTC
T ss_pred CCCC-CccCee-EEEeecCcEEEEEcCCC
Confidence 2111 012222 47788889999998776
No 371
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=26.53 E-value=2.2e+02 Score=22.29 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHHHHHHc
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHL 245 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~~a~~~ 245 (633)
....++..+++.|..+.. .. +....+..+....+|+|+ ....+...+++.+++.
T Consensus 30 ~~~~l~~~L~~~g~~v~~---~~------~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 30 LGGEIEKGLNVKGFMADV---TE------SLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES------CHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEE---eC------CHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 456677777777776542 11 233445555556788888 4444556677777664
No 372
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.49 E-value=2e+02 Score=21.38 Aligned_cols=58 Identities=7% Similarity=0.022 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh--HHHHHHHHHHHHcC
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--IWGLEVLNAAKHLR 246 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~--~~~~~il~~a~~~g 246 (633)
...+.+...+++.|..+... . +....+..+....+++|++.... .+...+++.+++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~---~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL---V------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe---c------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 34667778888888876532 1 23344555555679999987543 35667788887754
No 373
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=26.30 E-value=2.2e+02 Score=22.27 Aligned_cols=68 Identities=13% Similarity=0.007 Sum_probs=45.4
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh----HHHHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLNA 241 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il~~ 241 (633)
.+|.++ +|+. .....++..+++.|..+... .+....+..+.+..+|+|++.... .+...+++.
T Consensus 7 ~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~ 73 (136)
T 3kto_A 7 PIIYLV-DHQK---DARAALSKLLSPLDVTIQCF---------ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLET 73 (136)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHTTSSSEEEEE---------SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHH
T ss_pred CeEEEE-cCCH---HHHHHHHHHHHHCCcEEEEe---------CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHH
Confidence 355444 3433 35677888888888876522 134566667777789999998553 456778888
Q ss_pred HHHcC
Q 006736 242 AKHLR 246 (633)
Q Consensus 242 a~~~g 246 (633)
+++.+
T Consensus 74 l~~~~ 78 (136)
T 3kto_A 74 LVKRG 78 (136)
T ss_dssp HHHTT
T ss_pred HHhCC
Confidence 88865
No 374
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=26.26 E-value=1.3e+02 Score=25.51 Aligned_cols=81 Identities=10% Similarity=-0.001 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC
Q 006736 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY 231 (633)
Q Consensus 152 ~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~ 231 (633)
+++....|.++++.+++.++- |..-.....+.+...+.-.|+++... +-++....+.+-+..+.++++++-+
T Consensus 17 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~ 88 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHVV-------DVAKMIRVYNNPKYAGERVMLLFTN 88 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chheeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhccccCCcEEEEEECC
Confidence 467788899999999997664 43322234444545444457776532 2234444444444467889999999
Q ss_pred hHHHHHHHH
Q 006736 232 DIWGLEVLN 240 (633)
Q Consensus 232 ~~~~~~il~ 240 (633)
+.++..+++
T Consensus 89 p~d~~~lve 97 (165)
T 1vsq_C 89 PTDVERLVE 97 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 375
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.10 E-value=2.3e+02 Score=21.86 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=43.5
Q ss_pred CcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh--HHHHHHHHHH
Q 006736 165 WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD--IWGLEVLNAA 242 (633)
Q Consensus 165 w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~--~~~~~il~~a 242 (633)
-.++.++ +++. .....+++.+++.|..+.. . .+....+..+....+|+|++.... .+...+++++
T Consensus 7 ~~~iliv-dd~~---~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 73 (130)
T 3eod_A 7 GKQILIV-EDEQ---VFRSLLDSWFSSLGATTVL---A------ADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHI 73 (130)
T ss_dssp TCEEEEE-CSCH---HHHHHHHHHHHHTTCEEEE---E------SCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHH
T ss_pred CCeEEEE-eCCH---HHHHHHHHHHHhCCceEEE---e------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 3566555 3433 3466777888888887653 1 134566677777789999997543 4566777887
Q ss_pred HHcC
Q 006736 243 KHLR 246 (633)
Q Consensus 243 ~~~g 246 (633)
++.+
T Consensus 74 ~~~~ 77 (130)
T 3eod_A 74 RNRG 77 (130)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 7754
No 376
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=25.96 E-value=1.8e+02 Score=27.20 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=55.5
Q ss_pred eEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeee
Q 006736 471 HLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 549 (633)
Q Consensus 471 ~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 549 (633)
+|+||+.. .. ...+-.+++..+.++. + +++++.. .+...+...|.+|++|+++...
T Consensus 91 ~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P~--v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 147 (313)
T 2h98_A 91 TLRIGYVS--SL------------LYGLLPEIIYLFRQQNPE--IHIELIE-------CGTKDQINALKQGKIDLGFGRL 147 (313)
T ss_dssp EEEEEECG--GG------------GGTTHHHHHHHHHHHCTT--SEEEEEE-------CCHHHHHHHHHHTSCSEEEESS
T ss_pred EEEEEech--Hh------------HHhHHHHHHHHHHHHCCC--eEEEEEe-------CChHHHHHHHHcCCCCEEEEeC
Confidence 78998863 11 1245567888888877 4 4577766 6688999999999999998643
Q ss_pred EeeccccceeeeccceeecceEEEEecCC
Q 006736 550 AITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 550 ~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. ....+. ..++....+.++++++.
T Consensus 148 ~~---~~~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 148 KI---TDPAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp CC---CCTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCCee-EEEeeeCcEEEEEcCCC
Confidence 22 112222 36778888888887654
No 377
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=25.86 E-value=2e+02 Score=27.17 Aligned_cols=80 Identities=9% Similarity=-0.040 Sum_probs=46.9
Q ss_pred EEEEEEecCC----CcchhHHHHHHHHhh-------cCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHH
Q 006736 167 NVIALYVDDD----HGRNGIAALGDKLAE-------KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWG 235 (633)
Q Consensus 167 ~v~ii~~d~~----~g~~~~~~~~~~~~~-------~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~ 235 (633)
+|+++..... ++....+.++..+++ .|..+.....-. ..+.......++++.+.+.+.||........
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~-~~~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 82 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDD-ACDPKQAVAVANKIVNDGIKYVIGHLCSSST 82 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEEC-TTCHHHHHHHHHHHHHTTCCEEECCSSHHHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCC-CCCHHHHHHHHHHHHhCCCCEEEcCCCcHHH
Confidence 6788876532 455566677777766 455443322111 1233444556666666788888766556666
Q ss_pred HHHHHHHHHcCC
Q 006736 236 LEVLNAAKHLRM 247 (633)
Q Consensus 236 ~~il~~a~~~g~ 247 (633)
..+...+.+.++
T Consensus 83 ~~~~~~~~~~~i 94 (346)
T 1usg_A 83 QPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 666677766554
No 378
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=25.84 E-value=33 Score=30.59 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred ceEEEcCCchhhHHHHHHhhccCCccEEee
Q 006736 98 TVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (633)
Q Consensus 98 v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 127 (633)
+.+++||..+.=......+++.+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 357889998887778888999999999985
No 379
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=25.80 E-value=1.3e+02 Score=27.97 Aligned_cols=51 Identities=8% Similarity=-0.002 Sum_probs=36.4
Q ss_pred CCHHhHHHHHHcCcccEEEeeeEeeccccceeeeccceeecceEEEEecCC
Q 006736 528 PKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 528 ~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
+...+.+.++.+|.+|++.+.-.+..+..+.-.-..|+...+++++++++.
T Consensus 72 ~GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n 122 (279)
T 4gd5_A 72 IGSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNN 122 (279)
T ss_dssp CCHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTC
T ss_pred CCcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCC
Confidence 457788899999999999776555433332222246788889999998765
No 380
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=25.36 E-value=2e+02 Score=22.89 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=35.5
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHH
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKH 244 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~ 244 (633)
....++..+++.|..+.. .. +....+..+....+|+||+... ..+...+++.+++
T Consensus 20 ~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 20 ALAASISALSQEGFDIIQ---CG------NAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGHHHHHHHHHHTEEEEE---ES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEE---eC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 456677777777876652 21 2344455555567999999754 3456677888776
No 381
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=25.21 E-value=27 Score=31.47 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=27.4
Q ss_pred CceEEEcCCchhhHHHHHHhhccCCccEEee
Q 006736 97 ETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (633)
Q Consensus 97 ~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 127 (633)
+|..|+||..+.=......+++.+++++||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999988778888999999999974
No 382
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=25.19 E-value=56 Score=29.63 Aligned_cols=70 Identities=20% Similarity=0.105 Sum_probs=45.7
Q ss_pred HHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCc-ccEEEeeeEeeccc---cceee--eccceeecceEEE
Q 006736 500 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEV-YDAAVGDFAITTER---TKMVD--FTQPYIESGLVVV 573 (633)
Q Consensus 500 vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~~~~~~~~~~r---~~~~~--fs~p~~~~~~~~l 573 (633)
-++++.+.++.|.+ +++.. ++-..++..+.+|. +|+.++.-.-..++ ...+. -..+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~--V~~~~-------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVD--VVSSF-------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCE--EEEEE-------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCe--EEEEE-------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 46777887888866 44443 45778888888887 99998642111111 12232 1357888899999
Q ss_pred EecCC
Q 006736 574 APIKK 578 (633)
Q Consensus 574 v~~~~ 578 (633)
++++.
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98865
No 383
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=25.01 E-value=98 Score=18.16 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhhhcccCCCC
Q 006736 599 GIFFLVVGVVVWILEHRLNDDF 620 (633)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~ 620 (633)
++.=++|++++.+++|+.+..-
T Consensus 8 IIaPivVGvvl~L~d~WLn~r~ 29 (33)
T 2kv5_A 8 VIAPIFVGLVLEMISRVLDEED 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 3445688999999999988643
No 384
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=24.95 E-value=1.6e+02 Score=25.71 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=39.6
Q ss_pred cEEEEEEecCCCc-----chhHHHHHHHHhhcCcE--EEEEeecCCCCChhhHHHHHHHhhcC-CCeEEEEeeC
Q 006736 166 RNVIALYVDDDHG-----RNGIAALGDKLAEKRCR--LSHKVPLSPKGSRNQIIDTLLTVSSM-MSRILILHTY 231 (633)
Q Consensus 166 ~~v~ii~~d~~~g-----~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~~~~~~~~l~~i~~~-~~~vIvl~~~ 231 (633)
-+++||...++-. ......+.+.+++.|.. +.....++ .+...+...+++..+. +.|+||..+.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3677777544321 12345677788888876 44444454 4556777777776654 6899888743
No 385
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=24.92 E-value=77 Score=29.14 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=31.2
Q ss_pred CCCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcC
Q 006736 28 TIPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGP 104 (633)
Q Consensus 28 ~~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~ 104 (633)
...+.|+||+..... .-+...+.++.+.. |+.++++...+ .... ...+.+..+++.|+.
T Consensus 25 ~~~g~l~Ig~~~~~~--------~~l~~~l~~f~~~~---P~i~v~i~~~~----~~~~---~~~l~~g~~Di~i~~ 83 (290)
T 1twy_A 25 VQASEITISGSTSVA--------RIMDVLAEKYNQQH---PETYVAVQGVG----STAG---ISLLKKGVADIAMTS 83 (290)
T ss_dssp ---CEEEEEECHHHH--------HHHHHHHHHHHHHC---TTCEEEEEESC----HHHH---HHHHHTTSCSEEEES
T ss_pred ccCCCEEEecCcchH--------HHHHHHHHHHHhhC---CCceEEEEecC----cHHH---HHHHhcCCCcEEEec
Confidence 445789999864321 22334455665553 67888876522 2222 234555567777653
No 386
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=24.87 E-value=4.8e+02 Score=25.22 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=76.3
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|...+ -+.+.+|+.|+.++ +|..+.+...|+.-...+.++-+.+.++.-+++|+--..... .
T Consensus 67 k~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~--~ 134 (353)
T 3sds_A 67 KTVAMMFSKRS---TRTRVSTEGAVVKM-------GGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHS--D 134 (353)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHH--H
T ss_pred CEEEEEecCCc---hhHHHHHHHHHHHc-------CCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChH--H
Confidence 57888887764 35788999999985 566655533333322233444444555553444443222222 2
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC----------------CcEEEEEEe
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG----------------WRNVIALYV 173 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~----------------w~~v~ii~~ 173 (633)
+..++...++|+|.-+. + ..+ | .++|++++ +++| ..+|+++.+
T Consensus 135 ~~~lA~~s~vPVINag~-d-----~~H-------P-----tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD 196 (353)
T 3sds_A 135 IANLAKHSSVPVINALC-D-----TFH-------P-----LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGD 196 (353)
T ss_dssp HHHHHHHCSSCEEEEEC-S-----SCC-------H-----HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESC
T ss_pred HHHHHhhCCCCEEECCC-C-----CCC-------c-----HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECC
Confidence 45566778999998432 1 112 2 35677763 4554 347777753
Q ss_pred cCCCcchhHHHHHHHHhhcCcEEEEE
Q 006736 174 DDDHGRNGIAALGDKLAEKRCRLSHK 199 (633)
Q Consensus 174 d~~~g~~~~~~~~~~~~~~g~~v~~~ 199 (633)
- ......+...+...|.++...
T Consensus 197 ~----~nva~Sl~~~l~~lG~~v~~~ 218 (353)
T 3sds_A 197 A----NNVLFDLAIAATKMGVNVAVA 218 (353)
T ss_dssp C----CHHHHHHHHHHHHTTCEEEEE
T ss_pred C----chHHHHHHHHHHHcCCEEEEE
Confidence 2 236666777777889887654
No 387
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=24.60 E-value=2.9e+02 Score=23.69 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeE
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRI 225 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~v 225 (633)
..+.++|+..|.+++.+..-..++.. ....++.+ +.|.++.....-....+.......++++++.+..+
T Consensus 114 t~L~~~L~~~gi~~lvv~G~~t~~CV--~~Ta~da~-~~G~~v~v~~Da~~~~~~~~~~~al~~m~~~G~~i 182 (186)
T 3gbc_A 114 TPLLNWLRQRGVDEVDVVGIATDHCV--RQTAEDAV-RNGLATRVLVDLTAGVSADTTVAALEEMRTASVEL 182 (186)
T ss_dssp CBHHHHHHHTTCCEEEEEEECTTTHH--HHHHHHHH-HTTCEEEEEEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CcHHHHHHhcCCCEEEEEEecccHHH--HHHHHHHH-HCCCeEEEEhhhcCCCCHHHHHHHHHHHHHcCCEE
Confidence 34788889899999999888887763 33444443 56877654433222234566677888888776654
No 388
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=24.55 E-value=84 Score=30.67 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=25.2
Q ss_pred CCCeEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC
Q 006736 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN 80 (633)
Q Consensus 29 ~~~~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~ 80 (633)
...++++|...|... ....+++...+.+++.. |-++++.++...
T Consensus 32 ~~~~l~~~~~~~~~~----~~~~~~~~fa~~v~e~t----~G~v~i~v~~~g 75 (361)
T 2zzv_A 32 RRYRWRIQTAWDAGT----VGYSLFQKFTERVKELT----DGQLEVQPFPAG 75 (361)
T ss_dssp CCEEEEEEESSCTTS----HHHHHHHHHHHHHHHHT----TTSEEEEEECTT
T ss_pred cceEEEEeccCCCCC----chhHHHHHHHHHHHHhc----CCeEEEEEeCCC
Confidence 344788888766542 23345555667777653 224566666543
No 389
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=24.21 E-value=60 Score=29.90 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCc-ccEEEeeeEeeccc---cceee--eccceeecceEEE
Q 006736 500 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEV-YDAAVGDFAITTER---TKMVD--FTQPYIESGLVVV 573 (633)
Q Consensus 500 vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~~~~~~~~~~r---~~~~~--fs~p~~~~~~~~l 573 (633)
-++.+.+.++.|.+ +++.. ++-..++..+.+|. +|+.++.-.-..++ ...++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~--V~~~~-------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTP--VRVSY-------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCC--EEEEE-------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCe--EEEEE-------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 46777887888866 44443 45788888998886 99998742111111 22232 1256778889999
Q ss_pred EecCC
Q 006736 574 APIKK 578 (633)
Q Consensus 574 v~~~~ 578 (633)
++++.
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98875
No 390
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=24.20 E-value=1.4e+02 Score=25.39 Aligned_cols=81 Identities=7% Similarity=-0.040 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhc-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 152 QMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEK-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 152 ~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
+++....|.+.++.+++.++-++ .-...+.+.+-+.+.-. |+++... +-++....+.+-. .+.++++++-
T Consensus 19 HGQVat~W~k~~~~~~IiVvnD~-vA~D~~~k~~lkmA~P~~gvk~~i~-------sve~ai~~~~~~~-~~~~v~il~k 89 (168)
T 3eye_A 19 HGQVGVTWTSTIGANLLVVVDDV-VANDDIQQKLMGITAETYGFGIRFF-------TIEKTINVIGKAA-PHQKIFLICR 89 (168)
T ss_dssp TTHHHHHHHHHHTCSEEEEECHH-HHHSGGGGHHHHHHHHHHTCEEEEE-------CHHHHHHHGGGCC-TTCCEEEEES
T ss_pred chhhhheeccccCCCEEEEEccc-ccCCHHHHHHHHhcCCCCCCeEEEE-------EHHHHHHHHhccc-CCceEEEEEC
Confidence 56778899999999999876532 22222333333344344 8877532 2233344444333 5678899999
Q ss_pred ChHHHHHHHHH
Q 006736 231 YDIWGLEVLNA 241 (633)
Q Consensus 231 ~~~~~~~il~~ 241 (633)
++.++.++++.
T Consensus 90 ~p~d~~~lve~ 100 (168)
T 3eye_A 90 TPQTVRKLVEG 100 (168)
T ss_dssp SHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 99999888653
No 391
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=24.17 E-value=3.1e+02 Score=25.60 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=59.0
Q ss_pred eEEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhH-
Q 006736 32 VLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIA- 110 (633)
Q Consensus 32 ~i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~- 110 (633)
.-+||+++..+..........++.+.+. .|.++......+..+. ..+.+.+..++.+++.+.+....
T Consensus 140 ~k~vgvi~~~~~~~s~~~~~~~~~~~~~--------~g~~~v~~~~~~~~~~----~~~~~~l~~~~d~i~~~~d~~~~~ 207 (302)
T 3lkv_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAK--------HGIKLVEATALKSADV----QSATQAIAEKSDVIYALIDNTVAS 207 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHH--------TTCEEEEEECSSGGGH----HHHHHHHHTTCSEEEECSCHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHH--------cCCEEEEEecCChHHH----HHHHHhccCCeeEEEEeCCcchhh
Confidence 3567888765532222223333333332 2455544333332222 22333445578888877665433
Q ss_pred --HHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHHH
Q 006736 111 --HLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVD 161 (633)
Q Consensus 111 --~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll~ 161 (633)
..+...+...++|+++... ..+.. --+.....+...+++..++++.
T Consensus 208 ~~~~i~~~~~~~~iPv~~~~~--~~v~~---G~l~~~~~~~~~~G~~aa~~a~ 255 (302)
T 3lkv_A 208 AIEGMIVAANQAKTPVFGAAT--SYVER---GAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp THHHHHHHHHHTTCCEEESSH--HHHHT---TCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceeeccc--ccccC---CceEEEecCHHHHHHHHHHHHH
Confidence 3445677889999997422 11111 2345555677777777776643
No 392
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.88 E-value=2.4e+02 Score=24.57 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=35.2
Q ss_pred CcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHHHHHhhccCCccEEee
Q 006736 69 GTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHLVSHIANEFQVPLLSF 127 (633)
Q Consensus 69 g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~va~~~~~~~iP~Is~ 127 (633)
|.+++...+++..+... ...++..+|+.+|+|+.. +..++.++|+|.+-.
T Consensus 117 ~~~i~~~~~~~~~e~~~---~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~~vli 166 (196)
T 2q5c_A 117 GVKIKEFLFSSEDEITT---LISKVKTENIKIVVSGKT------VTDEAIKQGLYGETI 166 (196)
T ss_dssp TCEEEEEEECSGGGHHH---HHHHHHHTTCCEEEECHH------HHHHHHHTTCEEEEC
T ss_pred CCceEEEEeCCHHHHHH---HHHHHHHCCCeEEECCHH------HHHHHHHcCCcEEEE
Confidence 56777777766655443 456777789999999532 256778899998753
No 393
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.82 E-value=2.6e+02 Score=21.77 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=37.7
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC-------hHHHHHHHHHHHHcC
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY-------DIWGLEVLNAAKHLR 246 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~-------~~~~~~il~~a~~~g 246 (633)
.....++..+++.|..+... . +....+..+....+|+|++... ..+...+++++++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVITL---S------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEEE---C------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEEEe---C------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 35677888888888876522 1 2345555666677999999754 335667777777653
No 394
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.81 E-value=91 Score=25.50 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeEEEEeC
Q 006736 222 MSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 222 ~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (633)
.+|+++++........+++++.+.|. +.+|+.+.
T Consensus 69 ~vDlvii~vp~~~v~~v~~~~~~~g~---~~i~~~~~ 102 (138)
T 1y81_A 69 DVDVIVFVVPPKVGLQVAKEAVEAGF---KKLWFQPG 102 (138)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC---CEEEECTT
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHcCC---CEEEEcCc
Confidence 68999999999999999998888774 44677654
No 395
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.47 E-value=2.3e+02 Score=20.97 Aligned_cols=46 Identities=13% Similarity=0.343 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEE
Q 006736 149 DLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLS 197 (633)
Q Consensus 149 ~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~ 197 (633)
+.++-.-+.+++.++|++-|.++.+.++ .-.+.|+...+..|..+.
T Consensus 60 dkqllkemlelisklgykvflllqdqde---neleefkrkiesqgyevr 105 (134)
T 2lci_A 60 DKQLLKEMLELISKLGYKVFLLLQDQDE---NELEEFKRKIESQGYEVR 105 (134)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECSCH---HHHHHHHHHHHTTTCEEE
T ss_pred cHHHHHHHHHHHHHhCceeEEEeecCch---hHHHHHHHHHHhCCeeee
Confidence 4455566667777777766665553332 345566666666666654
No 396
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=23.45 E-value=4.8e+02 Score=24.73 Aligned_cols=134 Identities=21% Similarity=0.225 Sum_probs=82.9
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|-..+. +.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--.... ..
T Consensus 47 k~la~lF~e~ST---RTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~--~~ 114 (315)
T 1pvv_A 47 KTLAMIFQKPST---RTRVSFEVAMAHL-------GGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDH--KD 114 (315)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSH--HH
T ss_pred CEEEEEecCCCc---chHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCch--HH
Confidence 567888866542 5789999999985 67777777666554444555555566666556655422222 23
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC---CcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|.- .++ ..+| .+++++++ +++| -.+|+++.+- ......+.
T Consensus 115 ~~~lA~~~~vPVINa-~~~-----~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD~----~rva~Sl~ 172 (315)
T 1pvv_A 115 VEDLAKYATVPVING-LSD-----FSHP------------CQALADYMTIWEKKGTIKGVKVVYVGDG----NNVAHSLM 172 (315)
T ss_dssp HHHHHHHCSSCEEEE-ECS-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC----CHHHHHHH
T ss_pred HHHHHHhCCCCEEcC-CCC-----CCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECCC----cchHHHHH
Confidence 445566678999983 221 1222 35677764 3443 4678877532 34566677
Q ss_pred HHHhhcCcEEEEEe
Q 006736 187 DKLAEKRCRLSHKV 200 (633)
Q Consensus 187 ~~~~~~g~~v~~~~ 200 (633)
..+...|.++....
T Consensus 173 ~~~~~~g~~v~~~~ 186 (315)
T 1pvv_A 173 IAGTKLGADVVVAT 186 (315)
T ss_dssp HHHHHTTCEEEEEC
T ss_pred HHHHHCCCEEEEEC
Confidence 77888898876543
No 397
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=23.12 E-value=2.7e+02 Score=25.65 Aligned_cols=78 Identities=23% Similarity=0.202 Sum_probs=46.5
Q ss_pred HHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEe-e------ccccceeeeccceeecceEEE
Q 006736 501 DVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAI-T------TERTKMVDFTQPYIESGLVVV 573 (633)
Q Consensus 501 dl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~-~------~~r~~~~~fs~p~~~~~~~~l 573 (633)
.++..+.+.+|+++ +..+. ++ .-+...|.+|++|+....... + ..+.+...+..-+....+.++
T Consensus 182 ~v~~~~Le~~Gy~V--e~~~~------~~-~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 252 (268)
T 2b4l_A 182 NVIGKVLEDLGYEV--TLTQV------EA-GPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGLV 252 (268)
T ss_dssp HHHHHHHHHHTCEE--EEEEC------CT-THHHHHHHHTSSSEEEEEEETTTTHHHHHHTTTSEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCce--EEEEC------Ch-HHHHHHHHCCCCeEEehhhcCcCcHHHHHHHcCCeEEccCCCCCCeEEEE
Confidence 34555666789764 44442 23 677889999999999654322 1 111234555544555678889
Q ss_pred EecCCCCcCccccc
Q 006736 574 APIKKLNSNAWAFL 587 (633)
Q Consensus 574 v~~~~~~~~~~~~l 587 (633)
|++.....+..+.|
T Consensus 253 Vp~~~~~i~si~DL 266 (268)
T 2b4l_A 253 VPQYMKNVNSIEDL 266 (268)
T ss_dssp EETTCTTCCBGGGG
T ss_pred EehhhcccCCHHHh
Confidence 98765334444444
No 398
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=23.04 E-value=7e+02 Score=26.99 Aligned_cols=77 Identities=8% Similarity=0.003 Sum_probs=52.1
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC----hHHHHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY----DIWGLEVLNA 241 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~----~~~~~~il~~ 241 (633)
.+|.+-.-..+.-.-+.+-+...++..|++|..... .......++..++.++++|.+++. ...+..++++
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 678 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPL------FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKE 678 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCT------TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHH
Confidence 455544433333334456677788899999975321 123466778888889999999863 3577888889
Q ss_pred HHHcCCC
Q 006736 242 AKHLRMM 248 (633)
Q Consensus 242 a~~~g~~ 248 (633)
+++.|+.
T Consensus 679 Lr~~G~~ 685 (762)
T 2xij_A 679 LNSLGRP 685 (762)
T ss_dssp HHHTTCT
T ss_pred HHhcCCC
Confidence 9998874
No 399
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=22.91 E-value=2.9e+02 Score=22.06 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=42.9
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAK 243 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~ 243 (633)
.+|.|+ +++. .....++..+++.|..+... .+....+..+....+|+|++... ..+...+++.++
T Consensus 15 ~~ILiv-dd~~---~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~ 81 (153)
T 3hv2_A 15 PEILLV-DSQE---VILQRLQQLLSPLPYTLHFA---------RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIH 81 (153)
T ss_dssp CEEEEE-CSCH---HHHHHHHHHHTTSSCEEEEE---------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ceEEEE-CCCH---HHHHHHHHHhcccCcEEEEE---------CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHH
Confidence 355444 3432 35677888888888766522 13445566666678999999754 345667777777
Q ss_pred HcC
Q 006736 244 HLR 246 (633)
Q Consensus 244 ~~g 246 (633)
+..
T Consensus 82 ~~~ 84 (153)
T 3hv2_A 82 QQY 84 (153)
T ss_dssp HHC
T ss_pred hHC
Confidence 744
No 400
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=22.83 E-value=1.2e+02 Score=27.71 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeee
Q 006736 500 IDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDF 549 (633)
Q Consensus 500 vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 549 (633)
.++++.-.+++|++++++..+ |..+...+.+|+.||.+.+.
T Consensus 145 a~~iq~~l~~iGi~v~i~~~~---------~~~~~~~~~~~~~d~~~~~w 185 (258)
T 3lvu_A 145 LEIYTRALERLGIAAQIEKVD---------NAQYTARVAELDFDLTPFRR 185 (258)
T ss_dssp HHHHHHHHHTTTCCCEEEEEC---------HHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHcCCeeEEEecC---------HHHHHHHhccCCccEEEecC
Confidence 455666667789876666554 99999999999999997654
No 401
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=22.73 E-value=5e+02 Score=24.72 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=78.8
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...++.-.-.+.++-+.+.++.-+++|+--... ...
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~--~~~ 126 (325)
T 1vlv_A 59 MTLAMIFEKRS---TRTRLAFETAFAEE-------GGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYK--QET 126 (325)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSC--HHH
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCC--hHH
Confidence 56788886654 36789999999985 5666666544444333444555555666545555542222 222
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC---CcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|. +.+ +..+| .+++++++ +++| -.+|+++.+ ..+ .....+.
T Consensus 127 ~~~lA~~~~vPVIN--a~~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD--~~~-rva~Sl~ 185 (325)
T 1vlv_A 127 VEKLAEYSGVPVYN--GLT----DEFHP------------TQALADLMTIEENFGRLKGVKVVFMGD--TRN-NVATSLM 185 (325)
T ss_dssp HHHHHHHHCSCEEE--SCC----SSCCH------------HHHHHHHHHHHHHHSCSTTCEEEEESC--TTS-HHHHHHH
T ss_pred HHHHHHhCCCCEEe--CCC----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC--CCc-CcHHHHH
Confidence 34455556899997 222 12222 35677764 3443 357887763 222 4566677
Q ss_pred HHHhhcCcEEEEE
Q 006736 187 DKLAEKRCRLSHK 199 (633)
Q Consensus 187 ~~~~~~g~~v~~~ 199 (633)
..+...|.++...
T Consensus 186 ~~~~~~G~~v~~~ 198 (325)
T 1vlv_A 186 IACAKMGMNFVAC 198 (325)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHCCCEEEEE
Confidence 7787889887654
No 402
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=22.70 E-value=2.7e+02 Score=21.58 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCC-CeEEEEeeC--hHHHHHHHHHHHHcC
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMM-SRILILHTY--DIWGLEVLNAAKHLR 246 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~-~~vIvl~~~--~~~~~~il~~a~~~g 246 (633)
....+++.+++.|..+... . +....+..+.... +|+|++... ..+...+++++++.+
T Consensus 19 ~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 19 NREALILYLKSRGIDAVGA---D------GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHTTCCEEEE---S------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHcCceEEEe---C------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 5667778888888776532 1 2344455555555 899998754 346677888888753
No 403
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=22.64 E-value=1.4e+02 Score=27.90 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=54.7
Q ss_pred CceEEEEecCCCCCcCcEEecCCCCceeeeeHHHHHHHHHHCCCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEee
Q 006736 469 GRHLRIGVPSQVIYPEFVAQGKGTDKFSGYCIDVFTAVLELLPYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGD 548 (633)
Q Consensus 469 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~vdl~~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 548 (633)
.++|+||+.. .. ...+-.+++..+.++.- .+++++.. ++...+...|.+|++|+++..
T Consensus 104 ~~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 161 (315)
T 1uth_A 104 TRTFNLAMTD--IG------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 161 (315)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEEC
T ss_pred ceEEEEEech--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEec
Confidence 3578998752 10 11345567777877762 24466665 567789999999999999854
Q ss_pred eEeeccccceeeeccceeecceEEEEecCC
Q 006736 549 FAITTERTKMVDFTQPYIESGLVVVAPIKK 578 (633)
Q Consensus 549 ~~~~~~r~~~~~fs~p~~~~~~~~lv~~~~ 578 (633)
.. .....+. +.|+....+.++++++.
T Consensus 162 ~~---~~~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 162 LP---ELQTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp CT---TCCTTEE-EEEEEEECEEEEEETTC
T ss_pred CC---CCCCCce-EEEeeccceEEEEeCCC
Confidence 21 1112222 36778888888887765
No 404
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=22.45 E-value=5.1e+02 Score=24.67 Aligned_cols=137 Identities=11% Similarity=0.127 Sum_probs=77.0
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCC------------hHHHHHHHHHHHhcCceE
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYS------------RFLGMVEALTLLENETVA 100 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~------------~~~a~~~~~~li~~~v~a 100 (633)
-.|+.+|-..+ -+.+.+++.|+.++ +|..+.+...++.-. ..+.++-+.+.++.-+++
T Consensus 37 k~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~ 106 (324)
T 1js1_X 37 KTLLMIFFNSS---LRTRLSTQKAALNL-------GMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDI 106 (324)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSE
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcE
Confidence 57788887654 35789999999985 566666654443322 333444444555553455
Q ss_pred EEcCCc--------hhhHHHHHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC---Cc
Q 006736 101 IIGPQF--------SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WR 166 (633)
Q Consensus 101 viG~~~--------s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~ 166 (633)
|+--.. ......+..+++..++|+|+ +.+ +..+| .+++++++ +++| .+
T Consensus 107 IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVIN--a~~----~~~HP------------tQaLaDl~Ti~e~~g~~~l~ 168 (324)
T 1js1_X 107 IGVRSFARFENREYDYNEVIINQFIQHSGRPVFS--MEA----ATRHP------------LQSFADLITIEEYKKTARPK 168 (324)
T ss_dssp EEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEE--SSC----SSCCH------------HHHHHHHHHHHHHCSSSSCE
T ss_pred EEEecccccccccccccchHHHHHHhhCCCCEEE--CCC----CCCCc------------HHHHHHHHHHHHHcCCCCee
Confidence 443222 00222345566777899997 222 11222 36677764 4566 23
Q ss_pred -EEEEEE---ecCCCcchhHHHHHHHHhhcCcEEEEEe
Q 006736 167 -NVIALY---VDDDHGRNGIAALGDKLAEKRCRLSHKV 200 (633)
Q Consensus 167 -~v~ii~---~d~~~g~~~~~~~~~~~~~~g~~v~~~~ 200 (633)
++++.| .-| ......+...+...|.++....
T Consensus 169 l~ia~a~~~~vGD---~rva~Sl~~~~~~~G~~v~~~~ 203 (324)
T 1js1_X 169 VVMTWAPHPRPLP---QAVPNSFAEWMNATDYEFVITH 203 (324)
T ss_dssp EEEECCCCSSCCC---SHHHHHHHHHHHTSSSEEEEEC
T ss_pred EEEEEEcccccCC---cchHHHHHHHHHHCCCEEEEeC
Confidence 444411 122 3566777778888898876543
No 405
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=22.45 E-value=1.4e+02 Score=26.45 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=34.4
Q ss_pred EEEEEEecCCCcchhHHHHHHHHhh-c-CcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEE
Q 006736 167 NVIALYVDDDHGRNGIAALGDKLAE-K-RCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILIL 228 (633)
Q Consensus 167 ~v~ii~~d~~~g~~~~~~~~~~~~~-~-g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl 228 (633)
++.+++.++......++.+++.+++ . |+++.... + +....+.++...+.++++.
T Consensus 100 ~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~-~-------~~~~~~~~~~~g~~d~~~~ 155 (229)
T 3o6p_A 100 TMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSP-V-------PFSVRLDRSNKGDFDAVIG 155 (229)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEE-E-------CHHHHHHHHHHTCCSEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEe-c-------CHHHHHHHhhcCCceEEEe
Confidence 6777775544445677889999999 8 99987653 2 2333444455555666554
No 406
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=22.06 E-value=3e+02 Score=23.02 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=37.6
Q ss_pred ecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHH---HH-hhcCC-CeEEEEeeChHHH
Q 006736 173 VDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTL---LT-VSSMM-SRILILHTYDIWG 235 (633)
Q Consensus 173 ~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l---~~-i~~~~-~~vIvl~~~~~~~ 235 (633)
..|.-|....+.+.+.|++.|.+|...-.++ ....||.+.- .+ +.+.. .+.|++|+++...
T Consensus 18 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~--~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 83 (155)
T 1o1x_A 18 ASDHAAFELKEKVKNYLLGKGIEVEDHGTYS--EESVDYPDYAKKVVQSILSNEADFGILLCGTGLGM 83 (155)
T ss_dssp EECSTTHHHHHHHHHHHHHTTCEEEECCCCS--SSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred eeCchHHHHHHHHHHHHHHCCCEEEEeCCCC--CCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH
Confidence 3456788999999999999999988654443 1223443333 22 33333 4566666666443
No 407
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=21.98 E-value=2.2e+02 Score=27.27 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=51.4
Q ss_pred CCcEEEEEEecC----CCcchhHHHHHHHHhhcC-------cEEEEEeecCCCCChhhHHHHHHHhhc-CCCeEEEEeeC
Q 006736 164 GWRNVIALYVDD----DHGRNGIAALGDKLAEKR-------CRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRILILHTY 231 (633)
Q Consensus 164 ~w~~v~ii~~d~----~~g~~~~~~~~~~~~~~g-------~~v~~~~~~~~~~~~~~~~~~l~~i~~-~~~~vIvl~~~ 231 (633)
+--+|+++.... .+|....+.++..+++.| +++... +...+.......++++.. .+.+.||....
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~---d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 91 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKV---DDESAPPKATELTTKLIQSEKADVLIGTVH 91 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEE---ECTTCHHHHHHHHHCCCCCSCCSEEEECSS
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEe---cCCCCHHHHHHHHHHHHhcCCceEEEcCCc
Confidence 556899988653 355666777777777765 333322 111233444556666665 47888888777
Q ss_pred hHHHHHHHHHHHHcCC
Q 006736 232 DIWGLEVLNAAKHLRM 247 (633)
Q Consensus 232 ~~~~~~il~~a~~~g~ 247 (633)
......+...+.+.++
T Consensus 92 s~~~~~~~~~~~~~~i 107 (375)
T 4evq_A 92 SGVAMAMVKIAREDGI 107 (375)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHcCc
Confidence 7777777777777665
No 408
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=21.94 E-value=3e+02 Score=22.20 Aligned_cols=58 Identities=9% Similarity=0.112 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcC--CCeEEEEeeC--hHHHHHHHHHHHHcC
Q 006736 181 GIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSM--MSRILILHTY--DIWGLEVLNAAKHLR 246 (633)
Q Consensus 181 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~--~~~vIvl~~~--~~~~~~il~~a~~~g 246 (633)
....++..+++.|..+... . .+....+..+.+. .+|+|++... ..+...+++++++..
T Consensus 48 ~~~~l~~~L~~~g~~v~~~--~------~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 48 TVKQLTQIFTSEGFNIIDT--A------ADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp HHHHHHHHHHHTTCEEEEE--E------SSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCeEEEE--E------CCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 4566777777777766421 1 1233444445444 5788888643 345666777777654
No 409
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.82 E-value=1e+02 Score=29.79 Aligned_cols=78 Identities=9% Similarity=0.008 Sum_probs=42.9
Q ss_pred CcEEEEEEec-------CCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHH
Q 006736 165 WRNVIALYVD-------DDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLE 237 (633)
Q Consensus 165 w~~v~ii~~d-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 237 (633)
-+.|+++..+ +.|.....+.+.+.++ |..+.....-. .........++.+...+.|.||+...... ..
T Consensus 68 s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~ 142 (366)
T 3h5t_A 68 AGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPASP--ASSVDHVSAQQLVNNAAVDGVVIYSVAKG-DP 142 (366)
T ss_dssp CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECCC--CTTCCHHHHHHHHHTCCCSCEEEESCCTT-CH
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcCC--CccHHHHHHHHHHHhCCCCEEEEecCCCC-hH
Confidence 3578888754 2333445556666665 66655432221 11113456677787788888888754322 23
Q ss_pred HHHHHHHcCC
Q 006736 238 VLNAAKHLRM 247 (633)
Q Consensus 238 il~~a~~~g~ 247 (633)
.++.+.+.++
T Consensus 143 ~~~~l~~~~i 152 (366)
T 3h5t_A 143 HIDAIRARGL 152 (366)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHCCC
Confidence 4555555554
No 410
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=21.58 E-value=1.2e+02 Score=27.44 Aligned_cols=86 Identities=9% Similarity=-0.002 Sum_probs=51.6
Q ss_pred HHHHHHHHHH--cCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee
Q 006736 153 MAAIADIVDY--FGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT 230 (633)
Q Consensus 153 ~~al~~ll~~--~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~ 230 (633)
+..+++++.. ..-++|.++..+.. ...+.+.|++.|..+.....|.......+.......+...+.|+ |++.
T Consensus 106 ~e~L~~~~~~~~~~g~~vL~~rg~~~-----r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~-v~ft 179 (240)
T 3mw8_A 106 TEGLLTLPSLEQVSGKQIVIVRGKGG-----REAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDT-IVVT 179 (240)
T ss_dssp GGGGGGCGGGTCCTTCEEEEEEESSS-----CCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCE-EECC
T ss_pred HHHHHHhhhhccCCCCEEEEEeCCCc-----HHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCE-EEEc
Confidence 5666665542 45578888775532 35577888899988765554432212222333344444445665 5677
Q ss_pred ChHHHHHHHHHHHH
Q 006736 231 YDIWGLEVLNAAKH 244 (633)
Q Consensus 231 ~~~~~~~il~~a~~ 244 (633)
++..+..+++.+.+
T Consensus 180 S~s~v~~~~~~~~~ 193 (240)
T 3mw8_A 180 SGEVLENLINLVPK 193 (240)
T ss_dssp SHHHHHHHHHHSCG
T ss_pred CHHHHHHHHHHcch
Confidence 88888888876543
No 411
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=21.57 E-value=3.4e+02 Score=25.12 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEe---e
Q 006736 154 AAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILH---T 230 (633)
Q Consensus 154 ~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~---~ 230 (633)
..+++-+..-|-.-+.+++ +..|.....+.++..-+..++.+.... +- .+ ++ ++...+..++|.|++. .
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kd-fi--id--~~--qv~~A~~~GAD~VlLi~a~l 146 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKD-FV--VQ--PY--QIHEARAHGADMLLLIVAAL 146 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEES-CC--CS--HH--HHHHHHHTTCSEEEEEGGGS
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECc-cc--cC--HH--HHHHHHHcCCCEEEEecccC
Confidence 4466667777889998776 444544445555555444566665332 22 12 21 3566667899999984 3
Q ss_pred ChHHHHHHHHHHHHcCCC
Q 006736 231 YDIWGLEVLNAAKHLRMM 248 (633)
Q Consensus 231 ~~~~~~~il~~a~~~g~~ 248 (633)
+..+...+++.++++|+.
T Consensus 147 ~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 147 EQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHCCCc
Confidence 567888899999998875
No 412
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=21.53 E-value=3.1e+02 Score=22.76 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=37.3
Q ss_pred cCCCcchhHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHH-HhhcCC-CeEEEEeeChHHH
Q 006736 174 DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLL-TVSSMM-SRILILHTYDIWG 235 (633)
Q Consensus 174 d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~-~i~~~~-~~vIvl~~~~~~~ 235 (633)
.|.-|....+.+.+.|++.|.+|...-..+.. .+-.++...+. .+.+.. .+.|++|+++...
T Consensus 7 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 71 (149)
T 3he8_A 7 SDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGI 71 (149)
T ss_dssp ECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred ECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 45677888999999999999998865444321 12233333333 333334 4566666666443
No 413
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=21.48 E-value=5.6e+02 Score=24.78 Aligned_cols=134 Identities=19% Similarity=0.095 Sum_probs=76.6
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|-..+. +.+..|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--... ...
T Consensus 71 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~--~~~ 138 (358)
T 4h31_A 71 KNIALIFEKAST---RTRCAFEVAAFDQ-------GAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFG--QAI 138 (358)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSC--HHH
T ss_pred CEEEEEeCCCCh---hhHHHHHHHHHHc-------CCeEEECCcccccccCccchhHHHHHhhccCceeEecccc--hhH
Confidence 457888876542 5789999999985 5666655444443333333444444444434444432222 223
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcCC-----cEEEEEEecCCCcchhHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFGW-----RNVIALYVDDDHGRNGIAA 184 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~w-----~~v~ii~~d~~~g~~~~~~ 184 (633)
+..++...++|+|. +-+ +..+ | .++|++++ +++++ .+|+++. | ..+ .....
T Consensus 139 ~~~la~~s~vPVIN-G~g-----~~~H-------P-----tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG-D-~~~-~va~S 197 (358)
T 4h31_A 139 VEELGAFAGVPVWN-GLT-----DEFH-------P-----TQILADFLTMLEHSQGKALADIQFAYLG-D-ARN-NVGNS 197 (358)
T ss_dssp HHHHHHHSSSCEEE-SCC-----SSCC-------H-----HHHHHHHHHHHHTTTTCCGGGCEEEEES-C-TTS-HHHHH
T ss_pred HHHhhhhccCceEC-CCC-----cCCC-------c-----hHHHHHHHHHHHHhcCCCcCceEEEecC-C-CCc-ccchH
Confidence 45666778899996 222 2222 2 36688874 34442 4777665 3 222 45666
Q ss_pred HHHHHhhcCcEEEEE
Q 006736 185 LGDKLAEKRCRLSHK 199 (633)
Q Consensus 185 ~~~~~~~~g~~v~~~ 199 (633)
+...+...|.++...
T Consensus 198 ~~~~~~~~g~~v~~~ 212 (358)
T 4h31_A 198 LMVGAAKMGMDIRLV 212 (358)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCceEEEe
Confidence 777788889887654
No 414
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.45 E-value=2.6e+02 Score=21.10 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh---HHHHHHHHHHHHc
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD---IWGLEVLNAAKHL 245 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~---~~~~~il~~a~~~ 245 (633)
...+.++..+++.|..+... . +....+..+....+++|++.... .+...+++.+++.
T Consensus 16 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~ 75 (127)
T 2gkg_A 16 ALSATLRSALEGRGFTVDET---T------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp HHHHHHHHHHHHHTCEEEEE---C------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCceEEEe---c------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcC
Confidence 35667778888888876522 1 22344555555679999987543 3567788888875
No 415
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=21.44 E-value=2.2e+02 Score=27.17 Aligned_cols=79 Identities=9% Similarity=-0.187 Sum_probs=47.7
Q ss_pred cEEEEEEecC----CCcchhHHHHHHHHhhc-------C--cEEEEEeecCCCCChhhHHHHHHHhh-cCCCeEEEEeeC
Q 006736 166 RNVIALYVDD----DHGRNGIAALGDKLAEK-------R--CRLSHKVPLSPKGSRNQIIDTLLTVS-SMMSRILILHTY 231 (633)
Q Consensus 166 ~~v~ii~~d~----~~g~~~~~~~~~~~~~~-------g--~~v~~~~~~~~~~~~~~~~~~l~~i~-~~~~~vIvl~~~ 231 (633)
-+|+++.... .++....+.++..+++. | +++.... . ..+.......++++. +.+.+.||....
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d--~-~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYAD--S-RDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE--C-TTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEec--C-CCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 4788888653 24555666666665543 2 3443222 1 123444556677776 678888887666
Q ss_pred hHHHHHHHHHHHHcCC
Q 006736 232 DIWGLEVLNAAKHLRM 247 (633)
Q Consensus 232 ~~~~~~il~~a~~~g~ 247 (633)
......+...+.+.++
T Consensus 82 s~~~~~~~~~~~~~~i 97 (358)
T 3hut_A 82 STVSMAAGSIYGKEGM 97 (358)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHCCC
Confidence 6667777777777665
No 416
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=21.43 E-value=2.4e+02 Score=23.90 Aligned_cols=92 Identities=10% Similarity=-0.110 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCc--EEEEEeecCCCCChhhHHHHHHHhhc----
Q 006736 147 QSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRC--RLSHKVPLSPKGSRNQIIDTLLTVSS---- 220 (633)
Q Consensus 147 p~~~~~~~al~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~l~~i~~---- 220 (633)
+.-..++..+++.++..+..--.|+.+...- ..++.+-..+. |+ .+.....+. ...+....+..+.+
T Consensus 27 ~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~R---a~qTa~~l~~~-~~~~~~~~~~~L~---~~~~~~~~~~~l~~~~~~ 99 (172)
T 3f2i_A 27 QEGKQKTEKVAYRLVKLGRQFDLIVTSPLIR---ARQTAEILLAS-GLSCQLEESNHLA---PNGNIFNWLDYWLKPKNF 99 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEECSSHH---HHHHHHHHHHT-TSCSCEEECGGGS---TTCCHHHHHHHTHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECChHH---HHHHHHHHHhc-CCCCCeEECcccC---CccCHHHHHHHHHHhccC
Confidence 3446788899999887544322333333221 12333333333 43 333333332 23455566666652
Q ss_pred CCCeEEEEeeChHHHHHHHHHHHHc
Q 006736 221 MMSRILILHTYDIWGLEVLNAAKHL 245 (633)
Q Consensus 221 ~~~~vIvl~~~~~~~~~il~~a~~~ 245 (633)
.+.+.+++++.......++..+...
T Consensus 100 ~~~~~vllVgH~P~l~~l~~~L~~~ 124 (172)
T 3f2i_A 100 PENAQIAIVGHEPCLSNWTEILLWG 124 (172)
T ss_dssp CTTCEEEEEECTTHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCChHHHHHHHHHhcC
Confidence 5678899999998888888877653
No 417
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=21.27 E-value=3e+02 Score=21.51 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=50.8
Q ss_pred HHHcCCcEEEE-EEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHH
Q 006736 160 VDYFGWRNVIA-LYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEV 238 (633)
Q Consensus 160 l~~~~w~~v~i-i~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~i 238 (633)
++..|.+++.+ +.++-.|. ++.+..|+++-+ ++++.....+. ...+....++++.+.+.|.++++|+.+.-..+
T Consensus 28 ~R~~GskKvviNvis~~~y~-e~v~~~REAiLD-NIDlG~el~~W---Kp~eVdkm~~k~~q~~~dGl~iYCDdeNk~~m 102 (126)
T 2rbg_A 28 VRSSGSKKTTINVFTEIQYQ-ELVTLIREALLE-NIDIGYELFLW---KKNEVDIFLKNLEKSEVDGLLVYCDDENKVFM 102 (126)
T ss_dssp HHHHTCSEEEEEEECSSCHH-HHHHHTHHHHHH-TTTSEEEEEEE---CGGGHHHHHHHHTTCCCCEEEEEECGGGHHHH
T ss_pred HHhcCCceEEEEEecCCcHH-HHHHHHHHHHHh-ccccceEEEEe---CHHHHHHHHHHHHHhCCCceEEEeCCCchhHH
Confidence 45569999987 44555554 444445554433 33333333332 34689999999999999999999998766555
Q ss_pred HHHHH
Q 006736 239 LNAAK 243 (633)
Q Consensus 239 l~~a~ 243 (633)
.+-..
T Consensus 103 ~Ki~~ 107 (126)
T 2rbg_A 103 SKIVD 107 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 418
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=21.27 E-value=4e+02 Score=24.93 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=49.6
Q ss_pred CCcEEEEEEecC-CCc--chhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeChHHHHHHHH
Q 006736 164 GWRNVIALYVDD-DHG--RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLN 240 (633)
Q Consensus 164 ~w~~v~ii~~d~-~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~il~ 240 (633)
..+++.+|+.-. .-+ ......++..+++.|+.+....+- ...+.....+++.+ +.|.||..+.......++.
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~----~~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~v~~ 81 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTK----EQGDATKYCQEFAS-KVDLIIVFGGDGTVFECTN 81 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECC----STTHHHHHHHHHTT-TCSEEEEEECHHHHHHHHH
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEcc----CcchHHHHHHHhhc-CCCEEEEEccchHHHHHHH
Confidence 356787777322 122 244567788888889887654322 23355566666653 7888998888888888887
Q ss_pred HHHH
Q 006736 241 AAKH 244 (633)
Q Consensus 241 ~a~~ 244 (633)
.+..
T Consensus 82 ~l~~ 85 (304)
T 3s40_A 82 GLAP 85 (304)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 7765
No 419
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=21.21 E-value=3.5e+02 Score=22.38 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=36.2
Q ss_pred cCCCcchhHHHHHHHHhhcCcEEEEEeecCCC-CChhhHHHHHHH-hhcCC-CeEEEEeeChHH
Q 006736 174 DDDHGRNGIAALGDKLAEKRCRLSHKVPLSPK-GSRNQIIDTLLT-VSSMM-SRILILHTYDIW 234 (633)
Q Consensus 174 d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~l~~-i~~~~-~~vIvl~~~~~~ 234 (633)
.|.-|....+.+.+.|++.|.+|...-.++.. .+-.++...+.+ +.+.. .+.|++|+++..
T Consensus 8 sDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 71 (149)
T 2vvr_A 8 CDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVG 71 (149)
T ss_dssp ECTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred eCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHH
Confidence 34567889999999999999998765443321 122333333332 33333 456666666643
No 420
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.15 E-value=2.1e+02 Score=21.70 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeC--hHHHHHHHHHHHHc
Q 006736 180 NGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTY--DIWGLEVLNAAKHL 245 (633)
Q Consensus 180 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~--~~~~~~il~~a~~~ 245 (633)
.....++..++..|..+.. .. + ....+..+....+|+|++... ..+...+++..++.
T Consensus 12 ~~~~~l~~~L~~~~~~v~~---~~---~---~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 12 LNMKLFHDLLEAQGYETLQ---TR---E---GLSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES---C---HHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCcEEEE---eC---C---HHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 3456677778777877642 11 2 234444555557899998743 33556677777764
No 421
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=21.04 E-value=1.2e+02 Score=25.23 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCCccceEEEeCCCCC--CCCCHHhHHHHHHcCcccEEEeeeEeeccccc--eeeecc-ceeecceEEEE
Q 006736 500 IDVFTAVLELLPYAVPYKLVPFGDGH--NSPKRFDLLRLVSEEVYDAAVGDFAITTERTK--MVDFTQ-PYIESGLVVVA 574 (633)
Q Consensus 500 vdl~~~ia~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~--~~~fs~-p~~~~~~~~lv 574 (633)
.+.++..+...|+.+ -.+...+.|. .-..+..|+..+..|++|.++. ....|.. ..++-. -+...++.+++
T Consensus 24 ~~~l~~~~~~~g~~v-~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv---~~ldRL~R~~~~~l~~~l~~~gv~~~~ 99 (154)
T 3lhk_A 24 IQLIKSYAEENGWDI-QILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVII---AYPDRLTRFGFETLKEFFKSYGTEIVI 99 (154)
T ss_dssp HHHHHHHHHHTTCCC-EEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEE---SSHHHHCSSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCEE-EEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEE---EeCCcccccHHHHHHHHHHHCCCEEEE
Confidence 467788888999876 3344444333 2235899999999999998863 3444422 223222 23335666666
Q ss_pred ec
Q 006736 575 PI 576 (633)
Q Consensus 575 ~~ 576 (633)
-.
T Consensus 100 ~~ 101 (154)
T 3lhk_A 100 IN 101 (154)
T ss_dssp SC
T ss_pred Ee
Confidence 43
No 422
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=20.97 E-value=5.3e+02 Score=24.31 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCc----------chhHHHHHHHHhhc-C--cEEEEEeecCCC-CChhhHHHHHHHh
Q 006736 153 MAAIADIVDYFGWRNVIALYVDDDHG----------RNGIAALGDKLAEK-R--CRLSHKVPLSPK-GSRNQIIDTLLTV 218 (633)
Q Consensus 153 ~~al~~ll~~~~w~~v~ii~~d~~~g----------~~~~~~~~~~~~~~-g--~~v~~~~~~~~~-~~~~~~~~~l~~i 218 (633)
....+.-++..|.+++.++..|-.-+ ...+..+.+.+++. | .+|... -+|.. ....+....+..+
T Consensus 88 l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA-~yPE~Hp~~~~~~~d~~~L 166 (310)
T 3apt_A 88 VAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGA-AYPEGHPESESLEADLRHF 166 (310)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEE-ECTTCCTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEE-eCCCcCCCCCCHHHHHHHH
Confidence 34444445678999999998773221 11244444444444 4 566543 34421 2223333333333
Q ss_pred h---cCCCeEEEE--eeChHHHHHHHHHHHHcCCCCC
Q 006736 219 S---SMMSRILIL--HTYDIWGLEVLNAAKHLRMMES 250 (633)
Q Consensus 219 ~---~~~~~vIvl--~~~~~~~~~il~~a~~~g~~~~ 250 (633)
+ +.+++.++. +.+.+....+++.+++.|++.+
T Consensus 167 k~Kv~aGAdf~iTQ~ffD~~~~~~f~~~~r~~Gi~vP 203 (310)
T 3apt_A 167 KAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIP 203 (310)
T ss_dssp HHHHHHHCSEEEECCCSCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHcCCCEEEecccCCHHHHHHHHHHHHHcCCCCe
Confidence 3 257888886 5677889999999999997654
No 423
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=20.90 E-value=3.2e+02 Score=21.71 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=47.5
Q ss_pred chhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhc-C-CCeEEEEeeChHHHHHHHHHHHHcCCCCCCeE
Q 006736 179 RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-M-MSRILILHTYDIWGLEVLNAAKHLRMMESGYV 253 (633)
Q Consensus 179 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~-~-~~~vIvl~~~~~~~~~il~~a~~~g~~~~~~~ 253 (633)
.+..+.+++.++++|+.|.... |....+++--. . .+-.|+.+|.+..+..++++-...|+..|-.+
T Consensus 16 ~e~~~~l~~al~~~Gf~v~~~~---------d~~~~~~~~G~~~~~~~~il~~cnp~~a~~~l~~~p~~g~~lPcrv 83 (130)
T 1q9u_A 16 NETIERLEESLKQEGFGVLWQF---------SVTEKLQEKGLDFSTPMVILEVCNPQEAARVLNENLLVGYFLPCKL 83 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---------EHHHHHHHTTCCCCSCEEEEEEECHHHHHHHHHHCGGGGGGCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEE---------CHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHhCHHHHhhcCeEE
Confidence 3556789999999999987654 33444444322 2 45577888999999999999888887766433
No 424
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=20.85 E-value=1.4e+02 Score=27.90 Aligned_cols=71 Identities=10% Similarity=-0.003 Sum_probs=46.4
Q ss_pred eHHHHHHHHHH-CCCccceEEEeCCCCCCCCCHHhHHHHHHc-Cc-ccEEEeeeEeeccc---cceeeeccceeecceEE
Q 006736 499 CIDVFTAVLEL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSE-EV-YDAAVGDFAITTER---TKMVDFTQPYIESGLVV 572 (633)
Q Consensus 499 ~vdl~~~ia~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~d~~~~~~~~~~~r---~~~~~fs~p~~~~~~~~ 572 (633)
.-++++.+.++ .|.+ +++.. ++...++..+.+ |. +|+.++.-....++ ...++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~--V~~~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVD--VEREP-------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEE--EEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCce--EEEEe-------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677777777 5855 55554 567889999988 64 99997642111111 22344567888889999
Q ss_pred EEecCC
Q 006736 573 VAPIKK 578 (633)
Q Consensus 573 lv~~~~ 578 (633)
+++++.
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 998764
No 425
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=20.79 E-value=1.9e+02 Score=26.97 Aligned_cols=78 Identities=10% Similarity=-0.071 Sum_probs=48.6
Q ss_pred cEEEEEEecCCCcchhHHHHHHHHhh--cCcEEEEEeecCC------CCChhhHHHHHHHhhcCCCeEEEEeeChHHHHH
Q 006736 166 RNVIALYVDDDHGRNGIAALGDKLAE--KRCRLSHKVPLSP------KGSRNQIIDTLLTVSSMMSRILILHTYDIWGLE 237 (633)
Q Consensus 166 ~~v~ii~~d~~~g~~~~~~~~~~~~~--~g~~v~~~~~~~~------~~~~~~~~~~l~~i~~~~~~vIvl~~~~~~~~~ 237 (633)
++|+||...........+...+.++. .|.+|........ ..+..-..+..+.+.+.+.|+|+..-.+..+.+
T Consensus 4 ~~I~ivaPSs~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga~r 83 (274)
T 3g23_A 4 RRIAICAPSTPFTREDSARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGYGANR 83 (274)
T ss_dssp EEEEEECSSSCCCHHHHHHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSSCTHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeeccccHHH
Confidence 68888886654444445555556665 4888876433321 112233445445566678888888777778888
Q ss_pred HHHHHH
Q 006736 238 VLNAAK 243 (633)
Q Consensus 238 il~~a~ 243 (633)
++..+.
T Consensus 84 lL~~lD 89 (274)
T 3g23_A 84 IAEDAL 89 (274)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 888774
No 426
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=20.71 E-value=5.4e+02 Score=24.28 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=79.0
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCceEEEcCCchhhHHH
Q 006736 33 LNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLENETVAIIGPQFSVIAHL 112 (633)
Q Consensus 33 i~IG~l~p~~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~~~~~D~~~~~~~a~~~~~~li~~~v~aviG~~~s~~~~~ 112 (633)
-.|+.+|-..+ -+.+.+|+.|+.++ +|..+.+...++.-...+.++-+.+.++.-+++|+--... ...
T Consensus 40 k~l~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~--~~~ 107 (307)
T 2i6u_A 40 RGVAVIFDKNS---TRTRFSFELGIAQL-------GGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFG--QER 107 (307)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSS--HHH
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCC--hhH
Confidence 56788886654 35789999999985 5677777655544333333444444444434555542222 223
Q ss_pred HHHhhccCCccEEeeccCCCCCccCCCCceEEecCChHHHHHHHHHHH---HHcC---CcEEEEEEecCCCcchhHHHHH
Q 006736 113 VSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIV---DYFG---WRNVIALYVDDDHGRNGIAALG 186 (633)
Q Consensus 113 va~~~~~~~iP~Is~~a~~~~ls~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~~v~ii~~d~~~g~~~~~~~~ 186 (633)
+..++...++|+|.-+ + +..+| .+++++++ +++| -.+|+++.+ . .+ .....+.
T Consensus 108 ~~~lA~~~~vPVINa~--~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD-~-~~-rva~Sl~ 166 (307)
T 2i6u_A 108 LDAMASVATVPVINAL--S----DEFHP------------CQVLADLQTIAERKGALRGLRLSYFGD-G-AN-NMAHSLL 166 (307)
T ss_dssp HHHHHHHCSSCEEESC--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC-T-TS-HHHHHHH
T ss_pred HHHHHhhCCCCEEcCC--C----CCcCc------------cHHHHHHHHHHHHhCCcCCeEEEEECC-C-Cc-CcHHHHH
Confidence 4455666789999822 1 22222 35677764 3443 358887763 2 22 5566677
Q ss_pred HHHhhcCcEEEEEe
Q 006736 187 DKLAEKRCRLSHKV 200 (633)
Q Consensus 187 ~~~~~~g~~v~~~~ 200 (633)
..+...|.++....
T Consensus 167 ~~~~~~g~~v~~~~ 180 (307)
T 2i6u_A 167 LGGVTAGIHVTVAA 180 (307)
T ss_dssp HHHHHTTCEEEEEC
T ss_pred HHHHHCCCEEEEEC
Confidence 77888898876543
No 427
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=20.70 E-value=3.6e+02 Score=24.69 Aligned_cols=85 Identities=7% Similarity=-0.073 Sum_probs=57.3
Q ss_pred HHHHHHHcCCcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEee---Ch
Q 006736 156 IADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHT---YD 232 (633)
Q Consensus 156 l~~ll~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~---~~ 232 (633)
++++.+ -|..=+.+++ |..|..+..+.++..-+.-.+.|.... |- .+ .-++.+.+..++|.|++.+ +.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKD-Fi--id----~yQI~eAr~~GADaILLI~a~L~~ 139 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSD-FI--VK----ESQIDDAYNLGADTVLLIVKILTE 139 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEES-CC--CS----HHHHHHHHHHTCSEEEEEGGGSCH
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecc-cc--cc----HHHHHHHHHcCCCeeehHHhhcCH
Confidence 445544 4777777776 555666777777766555566665443 32 12 2346666677999999864 45
Q ss_pred HHHHHHHHHHHHcCCCC
Q 006736 233 IWGLEVLNAAKHLRMME 249 (633)
Q Consensus 233 ~~~~~il~~a~~~g~~~ 249 (633)
.+...+.+.|.++||..
T Consensus 140 ~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 140 RELESLLEYARSYGMEP 156 (258)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 78899999999999964
No 428
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=20.65 E-value=1.6e+02 Score=27.45 Aligned_cols=70 Identities=6% Similarity=-0.010 Sum_probs=46.3
Q ss_pred HHHHHHHHHH-CCCccceEEEeCCCCCCCCCHHhHHHHHHc-Cc-ccEEEeeeEeecc---ccceeeeccceeecceEEE
Q 006736 500 IDVFTAVLEL-LPYAVPYKLVPFGDGHNSPKRFDLLRLVSE-EV-YDAAVGDFAITTE---RTKMVDFTQPYIESGLVVV 573 (633)
Q Consensus 500 vdl~~~ia~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~d~~~~~~~~~~~---r~~~~~fs~p~~~~~~~~l 573 (633)
-++++.+.++ .|.+ +++.. ++...++..+.+ |. +|+.++.-....+ ....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~--V~~~~-------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVD--VQREA-------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCE--EEEEE-------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCce--EEEEe-------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 3677777777 4865 55555 567888899888 64 9998764211111 1223445678888899999
Q ss_pred EecCC
Q 006736 574 APIKK 578 (633)
Q Consensus 574 v~~~~ 578 (633)
++++.
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 98764
No 429
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.43 E-value=5.5e+02 Score=26.80 Aligned_cols=86 Identities=12% Similarity=-0.048 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHHHHHHHhhcCCCeEEEEeeCh----HHHHHHHH
Q 006736 165 WRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYD----IWGLEVLN 240 (633)
Q Consensus 165 w~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~l~~i~~~~~~vIvl~~~~----~~~~~il~ 240 (633)
-.+|.+.....+.-.-+...+...++.+|++|..-.. .......+..+++.++++|.+.+.. ..+..+++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~------~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~ 171 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGV------MVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAK 171 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCS------SBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHH
Confidence 3466666555555455677788889999999874321 1234566677777789999998643 45667788
Q ss_pred HHHHcCCCCCCeEEEEeC
Q 006736 241 AAKHLRMMESGYVWIVTD 258 (633)
Q Consensus 241 ~a~~~g~~~~~~~~i~~~ 258 (633)
++++.|.. -.++++..
T Consensus 172 ~Lr~~g~~--i~ViVGGa 187 (579)
T 3bul_A 172 EMERQGFT--IPLLIGGA 187 (579)
T ss_dssp HHHHTTCC--SCEEEEST
T ss_pred HHHHcCCC--CeEEEEcc
Confidence 88887763 33555544
No 430
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=20.40 E-value=2.9e+02 Score=24.43 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCC-cEEEEEEecCCCcchhHHHHHHHHhhcCcEEEEEeecCCCCChhhHH-HHHHHhhcCCCeEEEEee
Q 006736 153 MAAIADIVDYFGW-RNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQII-DTLLTVSSMMSRILILHT 230 (633)
Q Consensus 153 ~~al~~ll~~~~w-~~v~ii~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~-~~l~~i~~~~~~vIvl~~ 230 (633)
.+++.+-.+.-.. -.|+.|.+|... ....+.+++.|+.+.....-.. .+..++. ..+..+++.++|+||+.+
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~-----a~v~~~A~~~gIp~~~~~~~~~-~~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPG-----AKVVERVKVHEIPVCALDPKTY-PSKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSS-----SHHHHHHHTTTCCEEECCGGGS-SSHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCC-----cHHHHHHHHcCCCEEEeChhhc-CchhhhHHHHHHHHHhcCCCEEEEeC
Confidence 4555555443222 267777766432 2456778889998753221111 1233343 455677778999999998
Q ss_pred ChHHH
Q 006736 231 YDIWG 235 (633)
Q Consensus 231 ~~~~~ 235 (633)
...-.
T Consensus 90 y~~Il 94 (211)
T 3p9x_A 90 YMRLV 94 (211)
T ss_dssp CCSCC
T ss_pred chhhc
Confidence 76433
No 431
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=20.35 E-value=1.1e+02 Score=29.59 Aligned_cols=70 Identities=9% Similarity=-0.150 Sum_probs=46.7
Q ss_pred HHHHHHHHHHC-CCccceEEEeCCCCCCCCCHHhHHHHHHcCcccEEEeeeEeecccccee--eeccceeecceEEEEec
Q 006736 500 IDVFTAVLELL-PYAVPYKLVPFGDGHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMV--DFTQPYIESGLVVVAPI 576 (633)
Q Consensus 500 vdl~~~ia~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~r~~~~--~fs~p~~~~~~~~lv~~ 576 (633)
-.+++.+.+.. + +++.+.. +.-.+.+.++.+|++|+++....++.+..+.. -...|+...+++++++.
T Consensus 42 ~~~~~~f~~~~p~--v~i~v~~-------~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l~~~pi~~d~lvvvvn~ 112 (350)
T 1pc3_A 42 NLWGPAFHERYPN--VTITAQG-------TGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMNIALAISAQQVNYNL 112 (350)
T ss_dssp HHHHHHHHHHSTT--EEEECCB-------CCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTEEEEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHCCC--ceEEEec-------CCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCCEEeeEEeeeEEEEEeC
Confidence 34555555544 4 3355444 56888999999999999987766554432110 12578899999999987
Q ss_pred CC
Q 006736 577 KK 578 (633)
Q Consensus 577 ~~ 578 (633)
+.
T Consensus 113 ~~ 114 (350)
T 1pc3_A 113 PG 114 (350)
T ss_dssp TT
T ss_pred Cc
Confidence 65
Done!