Your job contains 1 sequence.
>006737
MSSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLE
QEKQLYQARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDD
GPVKSEQRPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSNVKTRNYSVLS
ESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRD
KAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKCFVGKRRFKRNESSSSDDDSDIDS
EDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKL
NGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAV
VKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK
NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL
DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPV
KVSKYNIYVFVLVLSIKIQAFYIICFVYTISMY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006737
(633 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2054688 - symbol:AT2G07750 species:3702 "Arabi... 991 7.1e-100 1
TAIR|locus:2038431 - symbol:AT1G63250 species:3702 "Arabi... 978 1.7e-98 1
TAIR|locus:2159517 - symbol:PDE340 "PIGMENT DEFECTIVE 340... 717 7.7e-71 1
TAIR|locus:2159527 - symbol:STRS2 "STRESS RESPONSE SUPPRE... 669 9.4e-66 1
UNIPROTKB|G4MSR4 - symbol:MGG_07099 "Uncharacterized prot... 379 1.5e-32 1
UNIPROTKB|Q2KEF1 - symbol:MGCH7_ch7g1085 "Putative unchar... 372 3.1e-32 1
UNIPROTKB|F1SV16 - symbol:F1SV16 "Uncharacterized protein... 356 3.3e-32 1
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 355 4.3e-32 1
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 355 4.3e-32 1
UNIPROTKB|P21693 - symbol:dbpA species:83333 "Escherichia... 344 7.5e-31 1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 344 7.5e-31 1
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 346 1.2e-30 2
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 346 1.3e-30 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 341 1.6e-30 1
TIGR_CMR|GSU_0189 - symbol:GSU_0189 "ATP-dependent RNA he... 341 1.6e-30 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 341 1.6e-30 1
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 344 3.0e-30 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 337 4.6e-30 1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 335 7.6e-30 1
UNIPROTKB|E9PIF2 - symbol:DDX10 "Probable ATP-dependent R... 356 1.2e-29 1
UNIPROTKB|Q13206 - symbol:DDX10 "Probable ATP-dependent R... 356 1.3e-29 1
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 354 2.2e-29 1
RGD|1308990 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box po... 354 2.2e-29 1
MGI|MGI:1924841 - symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) bo... 354 2.2e-29 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 350 2.5e-29 1
UNIPROTKB|Q4K4K3 - symbol:dbpA "ATP-independent RNA helic... 336 2.9e-29 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 348 3.5e-29 1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 337 3.6e-29 1
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 328 4.6e-29 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 328 4.6e-29 1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 345 5.8e-29 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 332 6.5e-29 1
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 349 8.2e-29 1
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 346 1.9e-28 2
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 343 2.0e-28 1
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 343 2.0e-28 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 322 2.1e-28 1
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 343 2.2e-28 2
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 343 2.3e-28 1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 335 2.6e-28 1
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 341 3.1e-28 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 329 3.2e-28 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 329 3.2e-28 1
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 343 3.4e-28 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 320 3.5e-28 1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 329 3.5e-28 1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 329 3.9e-28 1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 327 4.1e-28 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 327 4.1e-28 1
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 339 4.4e-28 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 334 5.1e-28 1
UNIPROTKB|F1P0I3 - symbol:DDX10 "Probable ATP-dependent R... 342 5.2e-28 1
UNIPROTKB|Q5ZJF6 - symbol:DDX10 "Probable ATP-dependent R... 342 5.2e-28 1
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 336 5.2e-28 1
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 343 5.2e-28 2
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 326 5.3e-28 1
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 326 5.3e-28 1
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 339 5.4e-28 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 337 6.9e-28 1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 337 9.3e-28 1
UNIPROTKB|Q485I3 - symbol:dbpA "ATP-dependent RNA helicas... 328 1.0e-27 1
TIGR_CMR|CPS_1540 - symbol:CPS_1540 "ATP-dependent RNA he... 328 1.0e-27 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 334 1.1e-27 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 338 1.1e-27 1
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 315 1.3e-27 1
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 315 1.3e-27 1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 337 1.3e-27 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 334 1.6e-27 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 334 1.6e-27 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 314 1.6e-27 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 314 1.6e-27 1
FB|FBgn0030855 - symbol:CG5800 species:7227 "Drosophila m... 337 1.7e-27 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 328 1.7e-27 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 330 1.8e-27 2
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 331 1.8e-27 1
FB|FBgn0037561 - symbol:CG9630 species:7227 "Drosophila m... 333 2.0e-27 1
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 308 2.0e-27 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 308 2.0e-27 2
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 308 2.0e-27 2
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 313 2.1e-27 1
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 313 2.1e-27 1
TAIR|locus:2087852 - symbol:PMH2 "putative mitochondrial ... 333 2.1e-27 1
SGD|S000003570 - symbol:HCA4 "DEAD box RNA helicase" spec... 335 2.4e-27 1
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 322 2.7e-27 1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 337 3.2e-27 2
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 328 3.7e-27 1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 328 3.8e-27 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 328 3.8e-27 1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 328 3.8e-27 1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 328 3.8e-27 1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 328 3.8e-27 1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 328 4.0e-27 1
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 331 4.9e-27 1
TIGR_CMR|CPS_1726 - symbol:CPS_1726 "RNA helicase DeaD" s... 329 5.8e-27 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 319 6.3e-27 1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 331 6.5e-27 1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 320 1.2e-26 1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 325 1.3e-26 1
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 308 1.4e-26 2
UNIPROTKB|Q8EIE5 - symbol:dbpA "ATP-dependent RNA helicas... 318 1.5e-26 1
WARNING: Descriptions of 742 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2054688 [details] [associations]
symbol:AT2G07750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AC004483 IPI:IPI00546939 PIR:E84488
RefSeq:NP_178818.1 UniGene:At.52694 ProteinModelPortal:O80792
SMR:O80792 PaxDb:O80792 PRIDE:O80792 EnsemblPlants:AT2G07750.1
GeneID:815422 KEGG:ath:AT2G07750 GeneFarm:994 TAIR:At2g07750
InParanoid:O80792 OMA:FRKTALK PhylomeDB:O80792
ProtClustDB:CLSN2713541 Genevestigator:O80792 GermOnline:AT2G07750
Uniprot:O80792
Length = 845
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 217/402 (53%), Positives = 275/402 (68%)
Query: 213 VMDFVRRAYFSGTD-KRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNREN-GDSKNMS 270
V+D RR + S + KRN D D DT PF+ +E S ++
Sbjct: 213 VLDSSRRGFSSMSRFKRNESSCDEGDDVDAKKLDT---LSPFSPKFSGTKEKVKSSTSVV 269
Query: 271 EFMKKKCFVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKIT 330
++ K G+R+F++N K+ GW D++K GSSASLG +D+K+T
Sbjct: 270 GVIRNKGLFGRRKFRKNDSSTEEDSDEEGNEG---KMIGWMDLRKTGSSASLGNHDIKLT 326
Query: 331 KRVPLKSLEDEHDFEE-QVELIRKEISXXXXXXXXXXXXXXXXXPILSQKRFDECGISPL 389
KRV +++ DE + + +R+++S I S KRFDE ISPL
Sbjct: 327 KRVN-RNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPL 385
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KAL+A+G ++MTRVQ+ATLS CL+GKDA+VKAKTGTGKS+AFLLPAIE VLKA +S
Sbjct: 386 TLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGK 445
Query: 450 -TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPC 508
V PI+VLILCPTRELASQIAAE ALLKNHDGIGV TL+GGTRF++DQ+RLES+PC
Sbjct: 446 GVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPC 505
Query: 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQS 568
QIL+ATPGRLLDHIENKSGL+ RLM LK+ ++DEAD LLDLGF++DVE I+DCLPR+RQS
Sbjct: 506 QILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQS 565
Query: 569 LLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
LLFSAT+PKE LVLKR+H+YIDT+GLG VET KV +
Sbjct: 566 LLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQ 607
Score = 373 (136.4 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 99/256 (38%), Positives = 129/256 (50%)
Query: 10 SKPLTN--ILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHXXXXXXXXXXXXXXXXXXXX 67
SK +T+ LW NR+F+R MGGGPRTFPGGLNKWQWKRMH
Sbjct: 58 SKRITSERSLW-NRIFSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYE 116
Query: 68 ARVRSQIRTKLFDKADPDSET----NQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPV 123
AR+R++IR K++ D +T H PMSP EH+K LADRFMK GA+DLWN++DGPV
Sbjct: 117 ARIRTEIRAKMWGHPDSGEKTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGPV 176
Query: 124 KS-EQRPRSGAEANQRPRLAGAPIDLRGLIS---D---KRXXXXXXXXXXXXXXXKTRNY 176
K +Q RS +++ + PID+R L+S D K RN
Sbjct: 177 KKFDQGSRSCSDS-----IDSTPIDVRRLVSATCDSMGKHRVLDSSRRGFSSMSRFKRNE 231
Query: 177 SVLSESKFSDRSKSASLI-FMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDG 235
S E D K +L F P E V S +V+ +R G +R F +ND
Sbjct: 232 SSCDEGDDVDAKKLDTLSPFSPKFS-GTKEKVKSSTSVVGVIRNKGLFG--RRKFRKNDS 288
Query: 236 SSTRDKAGFDTGNKAK 251
S+ D + GN+ K
Sbjct: 289 STEEDSD--EEGNEGK 302
>TAIR|locus:2038431 [details] [associations]
symbol:AT1G63250 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 EMBL:AC022355 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 UniGene:At.52694 ProtClustDB:CLSN2713541
IPI:IPI00538833 PIR:C96658 RefSeq:NP_176514.1 UniGene:At.36158
ProteinModelPortal:Q9C8S9 SMR:Q9C8S9 PaxDb:Q9C8S9 PRIDE:Q9C8S9
EnsemblPlants:AT1G63250.1 GeneID:842631 KEGG:ath:AT1G63250
GeneFarm:1027 TAIR:At1g63250 InParanoid:Q9C8S9 OMA:TSSRAHI
PhylomeDB:Q9C8S9 Genevestigator:Q9C8S9 GermOnline:AT1G63250
Uniprot:Q9C8S9
Length = 798
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 215/395 (54%), Positives = 270/395 (68%)
Query: 218 RRAYFSGTD-KRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNREN-GDSKNMSEFMKK 275
RR + S + KRN D D DT PF+ +E S+++ ++
Sbjct: 171 RRGFSSMSRFKRNESSCDEGDDFDAKKLDT---LSPFSPKFAGTKEKVKSSRSVVGVIRN 227
Query: 276 KCFVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPL 335
K G+R+F++N K+ GW D++K GSSASLG +D+K+TKRV
Sbjct: 228 KGLFGRRKFRKNDSSTEEDSDEEGDEG---KMIGWMDMRKTGSSASLGNHDIKLTKRVN- 283
Query: 336 KSLEDEHDFEE-QVELIRKEISXXXXXXXXXXXXXXXXXPILSQKRFDECGISPLTIKAL 394
+++ DE + + +R+++S I S KRFDE ISPLT+KAL
Sbjct: 284 RNVTDEELYPPLDINTVREDLSKRKSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKAL 343
Query: 395 TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLV 453
+A+G ++MTRVQ+ATLS CL+GKDA+VKAKTGTGKS+AFLLPAIE VLKA +S V
Sbjct: 344 SASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKV 403
Query: 454 PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVA 513
PI+ LILCPTRELASQIAAE ALLK HDGIGV TL+GGTRFK+DQ+RLES+PCQIL+A
Sbjct: 404 APIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIA 463
Query: 514 TPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSA 573
TPGRLLDHIENKSGL+ RLM LK+ ++DEAD LLDLGFR+DVE I+DCLPR+RQSLLFSA
Sbjct: 464 TPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSA 523
Query: 574 TMPKE------LVLKREHTYIDTVGLGSVETPVKV 602
T+PKE LVLKR+H+YIDT+GLG VET KV
Sbjct: 524 TIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKV 558
Score = 406 (148.0 bits), Expect = 6.2e-36, P = 6.2e-36
Identities = 104/263 (39%), Positives = 135/263 (51%)
Query: 1 MSSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHXXXXXXXXXXXXX 60
M S +L +RS +T LW NR+ +R MGGGPRTFPGGLNKWQWKRMH
Sbjct: 1 MYSLILRERSGSITGSLW-NRISSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLD 59
Query: 61 XXXXXXXARVRSQIRTKLFDKADPDSET----NQHKPMSPDEHVKALADRFMKEGAEDLW 116
AR+R++IR K++ D +T H PMSP EH+K LADRFMK GAED W
Sbjct: 60 QEKQLYEARIRTEIRAKMWGNPDSGEKTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFW 119
Query: 117 NEDDGPVK-SEQRPRSGAEANQRPRLAGAPIDLRGLIS---D---KRXXXXXXXXXXXXX 169
NE+DGPVK S+Q RSG+++ + +PID+R L+S D K
Sbjct: 120 NENDGPVKKSDQGSRSGSDSIDST--SNSPIDVRRLVSATCDSMGKNRVFGSSRRGFSSM 177
Query: 170 XXKTRNYSVLSESKFSDRSKSASLI-FMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKR 228
RN S E D K +L F P E V SR+V+ +R G +R
Sbjct: 178 SRFKRNESSCDEGDDFDAKKLDTLSPFSPKF-AGTKEKVKSSRSVVGVIRNKGLFG--RR 234
Query: 229 NFCRNDGSSTRDKAGFDTGNKAK 251
F +ND S+ D + G++ K
Sbjct: 235 KFRKNDSSTEEDSD--EEGDEGK 255
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 183/438 (41%), Positives = 247/438 (56%)
Query: 180 SESKF---SDRSKSASLIFMPNLECN-DGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDG 235
SES F SDR+ + F + N D + RN + + F G RN + G
Sbjct: 194 SESSFRGRSDRNVDSGSSFRGRSDKNVDSGSSFRGRNDRNVDSGSSFRGRSDRNV--DSG 251
Query: 236 SSTRDKA--GFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKCFVGKRRFKRNXXXXXX 293
SS R ++ D+G+ + G N N DS S F + + F+R
Sbjct: 252 SSFRGRSDRNVDSGSSFR------GRNDRNVDSG--SSFRGRNDRNVESGFRREPGSENN 303
Query: 294 XXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRK 353
+ E D + + LG D +P + DE D E LI+K
Sbjct: 304 RGLGKQTRGLSLEEEDSSDDDE--NRVGLGNID-----DLPSEDSSDEDD-ENDEPLIKK 355
Query: 354 EISXXXXXXXX-XXXXXXXXXPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSA 412
S LS+ RFD+ +SPL++KA+ AG+ MT VQEATL
Sbjct: 356 AASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPI 415
Query: 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIA 472
L+GKD + KAKTGTGK++AFLLPAIEAV+K+ +S PPI VL++CPTRELASQ A
Sbjct: 416 ILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA 475
Query: 473 AEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532
AEA LLK H IGV ++GGT+ +QRR++++PCQILVATPGRL DHIEN SG + RL
Sbjct: 476 AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRL 535
Query: 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL------VLKREHT 586
MG+K+LVLDEADHLLD+GFR+D+E I+ +P++RQ+ LFSAT+P+E+ LKR+H
Sbjct: 536 MGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHE 595
Query: 587 YIDTVGLGSVETPVKVSK 604
+I+ V GS ET KV++
Sbjct: 596 FINCVQEGSGETHQKVTQ 613
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 148/299 (49%), Positives = 196/299 (65%)
Query: 313 VKKMGSSAS-LGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISXXXXXXXXXXXXXXX 371
VKK+ S GK +K + + E + D +E LI+K S
Sbjct: 20 VKKLTSDEDGSGKL-VKDNNKSLKRGREGKSDVDEP--LIKKPASTTPLVTQIAKTSDSY 76
Query: 372 XXPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
LS+ RFD+ +SPLT+K + AG+ MT VQEATL L+GKD + KAKTGTGK++
Sbjct: 77 ----LSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTV 132
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AFLLP+IEAV+KA +S PPI VL++CPTRELA Q AAEA LLK H IGV ++
Sbjct: 133 AFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVI 192
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GGT+ +QRRL+ PCQILVATPGRL DHI+N SG + RLMG+K+LVLDEADHLLD+GF
Sbjct: 193 GGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGF 252
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSK 604
R+++E I+ +P++RQ+ LFSAT+ E+ LKR+H +++ V G+ ET KVS+
Sbjct: 253 RREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQ 311
>UNIPROTKB|G4MSR4 [details] [associations]
symbol:MGG_07099 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_003715292.1 EnsemblFungi:MGG_07099T0
GeneID:2682984 KEGG:mgr:MGG_07099 Uniprot:G4MSR4
Length = 717
Score = 379 (138.5 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 100/232 (43%), Positives = 137/232 (59%)
Query: 383 ECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV 441
+ I IKA+T Y MT VQ TL+ L+GKD V +AKTGTGK++AFL+P I+ +
Sbjct: 81 KANIDESIIKAITVDMRYEDMTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFLIPVIQKI 140
Query: 442 LKATSS--STTQLVP-------PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
L A S ++ P I +I+ PTRELA QI EA L + + G+ V T VG
Sbjct: 141 LDADPSLKEVSRGRPRRFAQRQSIKAIIISPTRELAEQIGKEATRLCQRN-GVTVQTAVG 199
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENK-SGLSVRLMGLKMLVLDEADHLLDLGF 551
GT + RR+ + C +LV TPGRL D + ++ SG+ ++ LVLDEAD +LD+GF
Sbjct: 200 GTGKRESLRRIHMEGCHLLVGTPGRLNDLLSDELSGIDAS--NVQALVLDEADRMLDVGF 257
Query: 552 RKDVENIVDCLPRR----RQSLLFSATMPKELV-LKREHTYIDTVGLGSVET 598
++ +IVD LP R RQ+LLFSAT+PK +V L R Y+D V+T
Sbjct: 258 ENELRSIVDMLPDRQQVPRQTLLFSATLPKNVVGLAR--WYVDKQNFEFVQT 307
>UNIPROTKB|Q2KEF1 [details] [associations]
symbol:MGCH7_ch7g1085 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
GO:GO:0008026 ProteinModelPortal:Q2KEF1 Uniprot:Q2KEF1
Length = 568
Score = 372 (136.0 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 94/236 (39%), Positives = 139/236 (58%)
Query: 386 ISPLTIKALTA-AGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLK 443
+ P+ + +T + +M+ VQ AT+ + + D + +AKTGTGK+IAFLLPA++ +L+
Sbjct: 83 LDPVLLDTITQDLKFDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAFLLPALQTLLR 142
Query: 444 ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
SS + VL++ PTRELA QIA EA ALL+ V T +GGT +QRR+
Sbjct: 143 RPSSRGND----VSVLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTNKDAEQRRI 198
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
CQIL+ TPGRL+DH+E +S ++ L + VLDEAD LLD+GF ++ IV LP
Sbjct: 199 LRG-CQILIGTPGRLMDHLEEQS-VAEMLQSVDTFVLDEADRLLDMGFMPQLKKIVAALP 256
Query: 564 RR----RQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
R RQ +LFSAT+ + + L ++ +I T+ G T +V ++ I V
Sbjct: 257 NRQKVPRQGMLFSATVAEHVAKVSSIALAPDYKFISTIPKGESNTHERVPQHLIEV 312
>UNIPROTKB|F1SV16 [details] [associations]
symbol:F1SV16 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074980 EMBL:CU930036
Ensembl:ENSSSCT00000016375 OMA:SAREVPM Uniprot:F1SV16
Length = 301
Score = 356 (130.4 bits), Expect = 3.3e-32, P = 3.3e-32
Identities = 94/242 (38%), Positives = 137/242 (56%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDLPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDET--ICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVL-SIKI 618
+ LP++RQ+LLFSAT K + ++ + V K +KY +F + SIKI
Sbjct: 241 ENLPKKRQTLLFSATQTKSV---KDLARLSLKNPEYVWVHEK-AKYRYVLFETIFDSIKI 296
Query: 619 QA 620
A
Sbjct: 297 SA 298
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 355 (130.0 bits), Expect = 4.3e-32, P = 4.3e-32
Identities = 88/211 (41%), Positives = 121/211 (57%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + SS Q LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKI--DPESSDVQ------ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI ++ + L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGNT-HIVVATPGRLLDHIRRET---IDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKELVLKREHTYID 589
+D P +Q++LFSAT+PK+ + K Y+D
Sbjct: 173 LDETPGSKQTMLFSATIPKD-IKKLAKRYMD 202
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 355 (130.0 bits), Expect = 4.3e-32, P = 4.3e-32
Identities = 88/211 (41%), Positives = 121/211 (57%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + SS Q LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKI--DPESSDVQ------ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI ++ + L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGNT-HIVVATPGRLLDHIRRET---IDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKELVLKREHTYID 589
+D P +Q++LFSAT+PK+ + K Y+D
Sbjct: 173 LDETPGSKQTMLFSATIPKD-IKKLAKRYMD 202
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 344 (126.2 bits), Expect = 7.5e-31, P = 7.5e-31
Identities = 84/194 (43%), Positives = 115/194 (59%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P + L GY+ MT VQ A L A L GKD V+AKTG+GK+ AF L ++ +
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DA 67
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
S TQ L+LCPTRELA Q+A E L + +LTL GG F + + L+
Sbjct: 68 SLFQTQ------ALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQH 121
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
P I+VATPGRLLDH++ G +V L L LV+DEAD +LD+GF +++++ P
Sbjct: 122 AP-HIIVATPGRLLDHLQK--G-TVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPAS 177
Query: 566 RQSLLFSATMPKEL 579
RQ+LLFSAT P+ +
Sbjct: 178 RQTLLFSATWPEAI 191
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 344 (126.2 bits), Expect = 7.5e-31, P = 7.5e-31
Identities = 75/195 (38%), Positives = 120/195 (61%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+ P ++A++ GY +MT +Q+ + A G+D + A+TGTGK+ AF LP ++
Sbjct: 2 RFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+++ S + L VLIL PTRELA+Q+A E + + VLT+ GG + +
Sbjct: 62 KMVENPSET---LKSNTRVLILTPTRELAAQVA-ENVEAYSKYLNFSVLTIYGGVKVETQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L+ I+VATPGRLL+H+ + ++ L + LVLDEAD +LD+GF D++ I+
Sbjct: 118 AQKLKRG-ADIIVATPGRLLEHL---TACNLSLSSVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 560 DCLPRRRQSLLFSAT 574
+ ++RQ+LLFSAT
Sbjct: 174 QAVNKKRQNLLFSAT 188
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 346 (126.9 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 80/205 (39%), Positives = 125/205 (60%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPR 249
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 250 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANGIN 303
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 304 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 361
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 362 LFSATQTRKVEDLARISLKKEPLYV 386
Score = 59 (25.8 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 84 PDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDG---PVKSEQRPRSGAEANQRPR 140
P+SE+ + K + V K AED+ +DG P ++E R + +
Sbjct: 103 PNSESKKKKKKKKRKVVDDAGPDSKKAKAEDIGEAEDGAQAPEETENRVEKPDDEGEDSE 162
Query: 141 LAGAPIDLRGLISD 154
+ P+ L G D
Sbjct: 163 VPSLPLGLTGAFED 176
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 346 (126.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 80/205 (39%), Positives = 125/205 (60%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 194 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPR 253
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 254 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANGIN 307
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 308 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 365
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 366 LFSATQTRKVEDLARISLKKEPLYV 390
Score = 59 (25.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 84 PDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDG---PVKSEQRPRSGAEANQRPR 140
P+SE+ + K + V K AED+ +DG P ++E R + +
Sbjct: 107 PNSESKKKKKKKKRKVVDDAGPDSKKAKAEDIGEAEDGAQAPEETENRVEKPDDEGEDSE 166
Query: 141 LAGAPIDLRGLISD 154
+ P+ L G D
Sbjct: 167 VPSLPLGLTGAFED 180
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 341 (125.1 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 79/201 (39%), Positives = 124/201 (61%)
Query: 381 FDECGI-SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
F E GI +PL + LT GY+ T VQ AT+ A L G+D + A TG+GK+ AF LP ++
Sbjct: 11 FAELGIIAPLGNR-LTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTRFKV 498
+ +A S+ + V + L+L PTRELA Q+A ++ + +G + ++ GG +
Sbjct: 70 RLSEAKSADKSAGV--VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L + +LVATPGRLLD + + + ++L + VLDEAD +L LGF +++E +
Sbjct: 128 QMQSLRAG-ADVLVATPGRLLDLLASNA---LKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ LPR++Q+LLFSAT P+E+
Sbjct: 184 LAALPRQKQTLLFSATFPEEV 204
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 341 (125.1 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 86/230 (37%), Positives = 128/230 (55%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ K F + ++ L + GY +MT +Q +L L GKD + +AKTG+GK+ AF +
Sbjct: 1 MNPKAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
+ L A S + L+LCPTRELA Q+ E L + D I +LT+ GG
Sbjct: 61 GLLSR-LDALSFR-------VQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
F LE +++ TPGRLLDH+ + G S+ L L+ LVLDEAD +LD+GF+ D+
Sbjct: 113 FGPQLGSLEHG-AHVVIGTPGRLLDHL--RRG-SLDLSALRTLVLDEADRMLDMGFQDDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV-----LKRE--HTYIDTV-GLGSVE 597
++ P +RQ+LLFSAT P + ++RE +D V G G++E
Sbjct: 169 SALIAAAPPKRQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGAIE 218
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 341 (125.1 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 79/201 (39%), Positives = 124/201 (61%)
Query: 381 FDECGI-SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
F E GI +PL + LT GY+ T VQ AT+ A L G+D + A TG+GK+ AF LP ++
Sbjct: 11 FAELGIIAPLGNR-LTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTRFKV 498
+ +A S+ + V + L+L PTRELA Q+A ++ + +G + ++ GG +
Sbjct: 70 RLSEAKSADKSAGV--VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L + +LVATPGRLLD + + + ++L + VLDEAD +L LGF +++E +
Sbjct: 128 QMQSLRAG-ADVLVATPGRLLDLLASNA---LKLTQVSAFVLDEADRMLSLGFTEELEQV 183
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ LPR++Q+LLFSAT P+E+
Sbjct: 184 LAALPRQKQTLLFSATFPEEV 204
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 344 (126.2 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 81/200 (40%), Positives = 116/200 (58%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E ++P +KA+ AGY T +Q + LEG+D + A+TGTGK+ +F LP I
Sbjct: 3 KFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + + +P L+LCPTRELA+Q+A E H + L+GG FK +
Sbjct: 63 LLARGRARAR---MPRS--LVLCPTRELAAQVA-ENFDTYTKHLKLTKALLIGGVSFK-E 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q L +L+ATPGRLLDH E L L G++++V+DEAD +LD+GF D+E I
Sbjct: 116 QDALIDRGVDVLIATPGRLLDHFERGKLL---LTGVQIMVVDEADRMLDMGFIPDIERIF 172
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 173 SLTPFTRQTLFFSATMAPEI 192
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 337 (123.7 bits), Expect = 4.6e-30, P = 4.6e-30
Identities = 78/199 (39%), Positives = 120/199 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+SP ++A+ GY + T +Q+ + A LEG+D + A+TGTGK+ F LP ++
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ T + P+ LIL PTRELA+QI E + + I L + GG
Sbjct: 63 LI--TRQPHAKGRRPVRALILTPTRELAAQIG-ENVRDYSKYLNIRSLVVFGGVSINPQM 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +LVATPGRLLD +E+++ +V+L +++LVLDEAD +LD+GF D+ ++
Sbjct: 120 MKLRGG-VDVLVATPGRLLD-LEHQN--AVKLDQVEILVLDEADRMLDMGFIHDIRRVLT 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT ++
Sbjct: 176 KLPAKRQNLLFSATFSDDI 194
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 335 (123.0 bits), Expect = 7.6e-30, P = 7.6e-30
Identities = 82/240 (34%), Positives = 135/240 (56%)
Query: 374 PILSQKR-FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
P++ + R F + G++ + +A G+ T++Q + L+G+D + A+TG+GK+ A
Sbjct: 19 PVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGA 78
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
F LP ++A+L A ++ L+L PTRELA QI+ E L + G+ +VG
Sbjct: 79 FALPILQALLDAPQR--------LFALVLTPTRELAFQIS-EQFEALGSSIGVHSAVIVG 129
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++ F
Sbjct: 130 GIDSMSQSLALAKKP-HIIIATPGRLVDHLENTKGFNLR--ALKFLVMDEADRILNMDFE 186
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKELV-LKRE--HTYIDTVGLGSVETPVKVSKYNIYV 609
+V+ I+ +PR R++ LFSATM K++ L+R + +T K+ +Y I++
Sbjct: 187 TEVDKILKVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFI 246
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 356 (130.4 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 84/200 (42%), Positives = 122/200 (61%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 185 AERINN--INILVCTPGRLLQHMDET--VSFHATDLQMLVLDEADRILDMGFADTMNAVI 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 356 (130.4 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 84/200 (42%), Positives = 122/200 (61%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 185 AERINN--INILVCTPGRLLQHMDET--VSFHATDLQMLVLDEADRILDMGFADTMNAVI 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 354 (129.7 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 84/200 (42%), Positives = 121/200 (60%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDET--ICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 354 (129.7 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 84/200 (42%), Positives = 121/200 (60%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDET--ICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 354 (129.7 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 84/200 (42%), Positives = 121/200 (60%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDET--ICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 350 (128.3 bits), Expect = 2.5e-29, P = 2.5e-29
Identities = 81/202 (40%), Positives = 124/202 (61%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I++ K F+ +S T K++ G+ +MT++Q + + G+D + A+TG+GK++AFL
Sbjct: 150 IMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFL 209
Query: 435 LPAIEAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
+PA+E + +K T + T VL++CPTRELA Q A LLK H V ++G
Sbjct: 210 IPAVELLYRVKFTPRNGTG------VLVICPTRELAIQSYGVAKELLKYHSQT-VGKVIG 262
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G + K + L +LVATPGRLLDH+EN +G + LK LV+DEAD +L+ F
Sbjct: 263 GEKRKTEAEILAKG-VNLLVATPGRLLDHLENTNGFIFK--NLKFLVMDEADRILEQNFE 319
Query: 553 KDVENIVDCLPRRRQSLLFSAT 574
+D++ I++ LP+ RQ+ LFSAT
Sbjct: 320 EDLKKILNLLPKTRQTSLFSAT 341
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 336 (123.3 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 84/205 (40%), Positives = 115/205 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +SP + L + GY QMT +Q +L L+G D + +AKTG+GK+ AF + +
Sbjct: 8 FNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ L++CPTRELA Q+A E L + D I VLTL GG F
Sbjct: 68 INPRYFGCQA--------LVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQI 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
LE I+V TPGR+ H+ + G S+ L GL LVLDEAD +LD+GF +E+I++
Sbjct: 120 ASLEHG-AHIIVGTPGRIQQHL--RKG-SLVLDGLNTLVLDEADRMLDMGFYDAIEDIIE 175
Query: 561 CLPRRRQSLLFSATMP---KELVLK 582
P RRQ+LLFSAT P K+L K
Sbjct: 176 KTPSRRQTLLFSATYPVGIKQLASK 200
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 348 (127.6 bits), Expect = 3.5e-29, P = 3.5e-29
Identities = 79/200 (39%), Positives = 123/200 (61%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F I T K++ G+ +MT +Q ++ LEGKD + A+TG+GK++AFL+PAIE
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI-GVLTLVGGTRFKVD 499
++K+ V+I+ PTRELA QI A L+K H G++ +GG K +
Sbjct: 181 LVKSNFKPRNGTG----VIIISPTRELALQIYGVARELMKYHTQTHGIV--IGGASKKPE 234
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ RLE +LVATPGRLLDH++N G + LK L++DEAD +L++GF +++ I+
Sbjct: 235 EERLEKG-VNLLVATPGRLLDHLQNTKGFITK--NLKCLIIDEADRILEVGFEEEMHQII 291
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P+ RQ++LFSAT +++
Sbjct: 292 KKVPKTRQTMLFSATQTRKV 311
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 337 (123.7 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 81/197 (41%), Positives = 113/197 (57%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GI +A GY T +Q + LEG+D + A+TG+GK+ AF LP +
Sbjct: 46 KSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML 105
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+A+++A + ++ L+L PTRELA QI+ +A L + G+ +VGG
Sbjct: 106 QALMEAPQT--------LFGLVLAPTRELAYQIS-QAFETLGSTIGVRCAVIVGGMDMVA 156
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L P I+VATPGRLLDH+EN G S+R LK L +DEAD LLD+ F + ++ I
Sbjct: 157 QSIALGKKP-HIIVATPGRLLDHLENTKGFSLR--NLKYLAIDEADRLLDMDFGESLDKI 213
Query: 559 VDCLPRRRQSLLFSATM 575
+ LPR R + LFSATM
Sbjct: 214 IRILPRTRHTYLFSATM 230
Score = 252 (93.8 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 65/159 (40%), Positives = 90/159 (56%)
Query: 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515
++ L+L PTRELA QI+ +A L + G+ +VGG L P I+VATP
Sbjct: 115 LFGLVLAPTRELAYQIS-QAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKP-HIIVATP 172
Query: 516 GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
GRLLDH+EN G S+R LK L +DEAD LLD+ F + ++ I+ LPR R + LFSATM
Sbjct: 173 GRLLDHLENTKGFSLR--NLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATM 230
Query: 576 PKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVL 614
T ++++ S+ PV+VS + Y V L
Sbjct: 231 S---------TKVESLQRASLSNPVRVSVSSKYQTVSTL 260
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 328 (120.5 bits), Expect = 4.6e-29, P = 4.6e-29
Identities = 74/199 (37%), Positives = 117/199 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S + ++ + GY + T +Q + L+G+D + A+TGTGK+ +F+LP +E
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + TQ + LIL PTRELA Q+A E + G+ L + GG + +
Sbjct: 63 LRQGQ----TQRKKRVRALILVPTRELAMQVA-EKVEQYGKDTGLKSLAVFGGVDEQAQK 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+RL D +LVATPGRL+D ++ V ++M+VLDEAD +LD+GF + + I+D
Sbjct: 118 QRL-IDGVDVLVATPGRLMDLYGQRA---VYFEEIEMVVLDEADRMLDMGFIESINKIID 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
CLP Q LLFSAT+ +++
Sbjct: 174 CLPSEVQFLLFSATLSRKV 192
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 328 (120.5 bits), Expect = 4.6e-29, P = 4.6e-29
Identities = 74/199 (37%), Positives = 117/199 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S + ++ + GY + T +Q + L+G+D + A+TGTGK+ +F+LP +E
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + TQ + LIL PTRELA Q+A E + G+ L + GG + +
Sbjct: 63 LRQGQ----TQRKKRVRALILVPTRELAMQVA-EKVEQYGKDTGLKSLAVFGGVDEQAQK 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+RL D +LVATPGRL+D ++ V ++M+VLDEAD +LD+GF + + I+D
Sbjct: 118 QRL-IDGVDVLVATPGRLMDLYGQRA---VYFEEIEMVVLDEADRMLDMGFIESINKIID 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
CLP Q LLFSAT+ +++
Sbjct: 174 CLPSEVQFLLFSATLSRKV 192
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 345 (126.5 bits), Expect = 5.8e-29, P = 5.8e-29
Identities = 78/205 (38%), Positives = 121/205 (59%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I++ FD +S T A+ G+ MT++Q ++ LEGKD + A+TG+GK++AFL
Sbjct: 85 IMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFL 144
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+PA+E + K S V+++CPTRELA Q A LLK+H V ++GG
Sbjct: 145 IPAVELLFKERFSPRNGTG----VIVICPTRELAIQTKNVAEELLKHHSQT-VSMVIGGN 199
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
+ + +R+ S +++ATPGRLLDH++N + LK LV+DEAD +L+ F +D
Sbjct: 200 NRRSEAQRIASGS-NLVIATPGRLLDHLQNTKAFIYK--HLKCLVIDEADRILEENFEED 256
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+ I+ LP+ RQ+ LFSAT ++
Sbjct: 257 MNKILKILPKTRQTALFSATQTSKV 281
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 332 (121.9 bits), Expect = 6.5e-29, P = 6.5e-29
Identities = 84/242 (34%), Positives = 137/242 (56%)
Query: 374 PILSQ---KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
PI+ + K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+
Sbjct: 16 PIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 75
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
AF LP + A+L+ T Q ++ L+L PTRELA QI+ E L + G+ +
Sbjct: 76 GAFALPILNALLE-----TPQR---LFALVLTPTRELAFQIS-EQFEALGSSIGVQSAVI 126
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
VGG L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++
Sbjct: 127 VGGIDSMSQSLALAKKP-HIIIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMD 183
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKELV-LKRE--HTYIDTVGLGSVETPVKVSKYNI 607
F +V+ I+ +PR R++ LFSATM K++ L+R + +T K+ +Y I
Sbjct: 184 FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYI 243
Query: 608 YV 609
++
Sbjct: 244 FI 245
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 349 (127.9 bits), Expect = 8.2e-29, P = 8.2e-29
Identities = 83/200 (41%), Positives = 120/200 (60%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSADGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDET--ICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 346 (126.9 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 80/205 (39%), Positives = 124/205 (60%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR 249
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 250 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNGIN 303
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 304 IIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 361
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 362 LFSATQTRKVEDLARISLKKEPLYV 386
Score = 38 (18.4 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 68 ARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWN-EDDGPVKSE 126
++ + + + K+ + A+PD++ + + E A + + E N ED+ V S
Sbjct: 107 SKKKKKKKRKMVNDAEPDTKKAKTENKGKSEEESAETTKETENNVEKPDNDEDESEVPSL 166
Query: 127 QRPRSGA 133
+GA
Sbjct: 167 PLGLTGA 173
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 343 (125.8 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 79/205 (38%), Positives = 125/205 (60%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T++A+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 187 TLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR 246
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 247 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANGIN 300
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 301 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 358
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 359 LFSATQTRKVEDLARISLKKEPLYV 383
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 343 (125.8 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 79/205 (38%), Positives = 125/205 (60%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T++A+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 191 TLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR 250
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 251 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANGIN 304
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 305 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 362
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 363 LFSATQTRKVEDLARISLKKEPLYV 387
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 322 (118.4 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 86/234 (36%), Positives = 127/234 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F +S + A+ GY + T +Q+ + L GKD + A+TGTGK+ +F+LP +E
Sbjct: 3 FSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQ 62
Query: 441 VLKATSSSTTQL-VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + +L I LIL PTRELA Q+ A K D I + + GG +
Sbjct: 63 LNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLD-ISSMAMYGGVDAQEQ 121
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++RL ILVATPGRLLD + + L MLVLDEAD +LD+GF D+ I+
Sbjct: 122 KQRLIWG-VDILVATPGRLLDMTHQRV---LHFDELDMLVLDEADRMLDMGFIDDINKII 177
Query: 560 DCLPRRRQSLLFSATMPKEL--VLKRE-HTYID-TVGLGSVETPVKVSKYNIYV 609
+ LP RQ+LLFSATM +E+ + KR H ++ ++G P K+ ++ + V
Sbjct: 178 ERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKP-KIEQWLVTV 230
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 343 (125.8 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 80/205 (39%), Positives = 123/205 (60%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 189 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLKFMPR 248
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ H L ++GG+ + ++L +
Sbjct: 249 NGTG----VLILSPTRELAMQTFGVLKELMMYHVHTYGL-IMGGSNRSAEAQKL-GNGIN 302
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 303 IIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 360
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 361 LFSATQTRKVEDLARISLKKEPLYV 385
Score = 41 (19.5 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 13/66 (19%), Positives = 28/66 (42%)
Query: 68 ARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQ 127
++ + + + K+ D A PD++ ++ + E + G + E+D V S
Sbjct: 107 SKKKKKRKRKMVDDAGPDTKKSKTEDKGDSEEGTQAPEETENNGEKPDDEEEDSEVPSLP 166
Query: 128 RPRSGA 133
+GA
Sbjct: 167 LGLTGA 172
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 343 (125.8 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 79/205 (38%), Positives = 125/205 (60%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T++A+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 216 TLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPR 275
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 276 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANGIN 329
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 330 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM 387
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 388 LFSATQTRKVEDLARISLKKEPLYV 412
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 335 (123.0 bits), Expect = 2.6e-28, P = 2.6e-28
Identities = 86/241 (35%), Positives = 136/241 (56%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ +K F E G+S A G+++ +++Q+A L L+GKD + A+TG+GK+ AF +
Sbjct: 41 VKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAI 100
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT--LVGG 493
P ++++L + + L+L PTRELA QI + AL GIG++ +VGG
Sbjct: 101 PVLQSLLDHPQA--------FFCLVLTPTRELAFQIGQQFEAL---GSGIGLIAAVIVGG 149
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
L P I+VATPGRL+DH+EN G +++ LK L++DEAD +L++ F
Sbjct: 150 VDMAAQAMALARRP-HIIVATPGRLVDHLENTKGFNLK--ALKFLIMDEADRILNMDFEV 206
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNI---YVF 610
+++ I+ +PR R++ LFSATM K+ V K E + SV + K N+ Y+F
Sbjct: 207 ELDKILKVIPRERRTYLFSATMTKK-VSKLERASLRDPARVSVSSRYKTVD-NLKQHYIF 264
Query: 611 V 611
V
Sbjct: 265 V 265
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 341 (125.1 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 78/209 (37%), Positives = 126/209 (60%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+S T+K + G+ MT +Q T+ LEG+D + AKTG+GK++AFL+P+IE + K
Sbjct: 168 VSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLK 227
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V++L PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 228 FMPRNGTG----VIVLSPTRELAMQTYGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-A 281
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
+ ILVATPGRLLDH++N G + L+ L++DEAD +L++GF ++++ I+ LP++
Sbjct: 282 NGVNILVATPGRLLDHLQNTPGFMFK--NLQCLIIDEADRILEVGFEEELKQIIKLLPKK 339
Query: 566 RQSLLFSATMPKE------LVLKREHTYI 588
RQS+LFSAT ++ + LK+E Y+
Sbjct: 340 RQSMLFSATQTRKVEDLARISLKKEPLYV 368
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 329 (120.9 bits), Expect = 3.2e-28, P = 3.2e-28
Identities = 81/234 (34%), Positives = 133/234 (56%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+ AF LP +
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
A+L+ T Q ++ L+L PTRELA QI+ E L + G+ +VGG
Sbjct: 84 NALLE-----TPQR---LFALVLTPTRELAFQIS-EQFEALGSSIGVQCAVIVGGIDSMS 134
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++ F +V+ I
Sbjct: 135 QSLALAKKP-HIVIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMDFETEVDKI 191
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKRE--HTYIDTVGLGSVETPVKVSKYNIYV 609
+ +PR R++ LFSATM K++ L+R + +T K+ +Y +++
Sbjct: 192 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI 245
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 329 (120.9 bits), Expect = 3.2e-28, P = 3.2e-28
Identities = 81/234 (34%), Positives = 133/234 (56%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+ AF LP +
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
A+L+ T Q ++ L+L PTRELA QI+ E L + G+ +VGG
Sbjct: 84 NALLE-----TPQR---LFALVLTPTRELAFQIS-EQFEALGSSIGVQCAVIVGGIDSMS 134
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++ F +V+ I
Sbjct: 135 QSLALAKKP-HIVIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMDFETEVDKI 191
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKRE--HTYIDTVGLGSVETPVKVSKYNIYV 609
+ +PR R++ LFSATM K++ L+R + +T K+ +Y +++
Sbjct: 192 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI 245
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 343 (125.8 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 89/249 (35%), Positives = 140/249 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + IS LT+KALT + ++++T +Q A+L L G+D + AKTG+GK+++F+LP +E
Sbjct: 143 FKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILET 202
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + I ++L PTRELA QI A+ K H L ++GG V Q
Sbjct: 203 LWRNRWGRDDG----IGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGL-IIGGRN--VQQ 255
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ + + IL+ATPGRLL H++ G LK+LVLDEAD +LDLGF K + +IV+
Sbjct: 256 EKDKINAMNILIATPGRLLQHMDETYGFDCS--NLKILVLDEADRILDLGFSKCLNSIVE 313
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKIQA 620
LPR RQ+LLFSAT K + + + + E + + N+ + V+ ++++
Sbjct: 314 NLPRERQTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKL 373
Query: 621 FYIICFVYT 629
+ F+ T
Sbjct: 374 NMLFSFIKT 382
Score = 45 (20.9 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 248 NKAKPFAR--NLGNNRENGDSKNMSEFMKKKCFVGKRRFKRN 287
+K KP + N NN+ N ++ N +E K K +F ++
Sbjct: 6 SKQKPQKKENNNNNNKNNNNNNNKTENNKTNKDFTKNKFDKD 47
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 320 (117.7 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 95/238 (39%), Positives = 127/238 (53%)
Query: 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT 450
I + GY Q T +Q+ + A + G D + A+TGTGK+ AF LP I K +
Sbjct: 14 IDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIIN---KFGRNKID 70
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV--GGT--RFKVDQRRLESD 506
LIL PTRELASQI + DG+G+ T V GG + +VD L D
Sbjct: 71 IKAKSTRSLILTPTRELASQIMQN---IDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLD 127
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
ILVATPGRLLD IE +G + L++ VLDEAD +LD+GF KDV++I+ LP+ R
Sbjct: 128 ---ILVATPGRLLDLIE--TG-DINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR 181
Query: 567 QSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKIQAFYII 624
Q+LLFSATMP E+ + E D + V + N V+ L S K+ + I
Sbjct: 182 QTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNI 239
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 329 (120.9 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 81/234 (34%), Positives = 133/234 (56%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+ AF LP +
Sbjct: 23 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 82
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
A+L+ T Q ++ L+L PTRELA QI+ E L + G+ +VGG
Sbjct: 83 NALLE-----TPQR---LFALVLTPTRELAFQIS-EQFEALGSSIGVQCAVIVGGIDSMS 133
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++ F +V+ I
Sbjct: 134 QSLALAKKP-HIVIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMDFETEVDKI 190
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKRE--HTYIDTVGLGSVETPVKVSKYNIYV 609
+ +PR R++ LFSATM K++ L+R + +T K+ +Y +++
Sbjct: 191 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI 244
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 329 (120.9 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 81/234 (34%), Positives = 133/234 (56%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+ AF LP +
Sbjct: 26 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 85
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
A+L+ T Q ++ L+L PTRELA QI+ E L + G+ +VGG
Sbjct: 86 NALLE-----TPQR---LFALVLTPTRELAFQIS-EQFEALGSSIGVQCAVIVGGIDSMS 136
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++ F +V+ I
Sbjct: 137 QSLALAKKP-HIVIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMDFETEVDKI 193
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKRE--HTYIDTVGLGSVETPVKVSKYNIYV 609
+ +PR R++ LFSATM K++ L+R + +T K+ +Y +++
Sbjct: 194 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI 247
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 327 (120.2 bits), Expect = 4.1e-28, P = 4.1e-28
Identities = 85/223 (38%), Positives = 124/223 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S +KA+ GY + +Q + A L GKD + A+TGTGK+ F LP +E
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K Q + LIL PTRELA+QI + + L H + + GG +
Sbjct: 63 LAKGPKVRANQ----VRALILTPTRELAAQIQ-DNVMLYGRHLPLKSAVVFGGVKINPQM 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+R+ ILVATPGRL+D + N++ +V+ L++LVLDEAD +LD+GF +D+ I+
Sbjct: 118 QRM-CKGADILVATPGRLMD-LYNQN--AVKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVS 603
LP +RQ+LLFSAT E+ RE + G V PV++S
Sbjct: 174 LLPEKRQNLLFSATFSTEI---RE------LAKGLVNNPVEIS 207
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 327 (120.2 bits), Expect = 4.1e-28, P = 4.1e-28
Identities = 85/223 (38%), Positives = 124/223 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S +KA+ GY + +Q + A L GKD + A+TGTGK+ F LP +E
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K Q + LIL PTRELA+QI + + L H + + GG +
Sbjct: 63 LAKGPKVRANQ----VRALILTPTRELAAQIQ-DNVMLYGRHLPLKSAVVFGGVKINPQM 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+R+ ILVATPGRL+D + N++ +V+ L++LVLDEAD +LD+GF +D+ I+
Sbjct: 118 QRM-CKGADILVATPGRLMD-LYNQN--AVKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVS 603
LP +RQ+LLFSAT E+ RE + G V PV++S
Sbjct: 174 LLPEKRQNLLFSATFSTEI---RE------LAKGLVNNPVEIS 207
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 339 (124.4 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 97/263 (36%), Positives = 149/263 (56%)
Query: 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPA 437
++ F E G+S ++AL GY + T +Q A++ + GKD + +A+TGTGK+ AF LP
Sbjct: 5 ERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPL 64
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+ K TS +T Q +L+L PTRELA Q+A + K VL + GG +
Sbjct: 65 LN---KVTSQTTPQ------ILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
L+ P Q++V TPGR++DH+ + G +++L L+ LVLDEAD +L +GF D+E
Sbjct: 116 QQLNALKRGP-QVIVGTPGRVMDHM--RRG-TLKLETLQALVLDEADEMLKMGFIDDIEW 171
Query: 558 IVDCLPRRRQSLLFSATMPKELV-LKREH----TYIDTVG----LGSVETP-VKVSKYN- 606
I++ P +RQ LFSATMP+++ + +H T I + S+E V+VS++N
Sbjct: 172 ILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNK 231
Query: 607 IYVFVLVLSIKIQAFYIICFVYT 629
+ V VL ++ II FV T
Sbjct: 232 LEALVRVLEVE-NTEGIIIFVRT 253
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 334 (122.6 bits), Expect = 5.1e-28, P = 5.1e-28
Identities = 79/200 (39%), Positives = 121/200 (60%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
++F+E +S T+KA+ G+ MT VQ T+ L G+D + AKTG+GK++AFL+PAI
Sbjct: 42 EKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 101
Query: 439 EAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTR 495
E + LK + T ++ ++ PTRELA QI A L++ H G++ +GG
Sbjct: 102 ELLHSLKFKPRNGTGII------VITPTRELALQIFGVARELMEFHSQTFGIV--IGGAN 153
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ + +L +L+ATPGRLLDH++N G + LK L++DEAD +L++GF ++
Sbjct: 154 RRQEAEKLMKG-VNMLIATPGRLLDHLQNTKGFVFK--NLKALIIDEADRILEIGFEDEM 210
Query: 556 ENIVDCLPRR-RQSLLFSAT 574
I+ LP RQS+LFSAT
Sbjct: 211 RQIIKILPNEDRQSMLFSAT 230
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 342 (125.4 bits), Expect = 5.2e-28, P = 5.2e-28
Identities = 80/201 (39%), Positives = 119/201 (59%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+RF + +S T+K L A Y +T +Q T+ L+GKD + AKTG+GK++AF++PA+
Sbjct: 73 QRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPAL 132
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + + +S L VLI+ PTRELA Q + KNHD L ++GG K
Sbjct: 133 ELLYRLQWTSADGLG----VLIISPTRELAFQTFKVLRKVGKNHDFSAGL-IIGGKDLKE 187
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ R+ +L+ TPGRLL H++ S L+ML+LDEAD +LD+GF + I
Sbjct: 188 ESERIHH--INMLICTPGRLLQHMDETSYFYAS--DLQMLILDEADRILDMGFADTMNAI 243
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ LP++RQ+LLFSAT K +
Sbjct: 244 IENLPKKRQTLLFSATQTKSV 264
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 342 (125.4 bits), Expect = 5.2e-28, P = 5.2e-28
Identities = 80/201 (39%), Positives = 119/201 (59%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+RF + +S T+K L A Y +T +Q T+ L+GKD + AKTG+GK++AF++PA+
Sbjct: 73 QRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPAL 132
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + + +S L VLI+ PTRELA Q + KNHD L ++GG K
Sbjct: 133 ELLYRLQWTSADGLG----VLIISPTRELAFQTFKVLRKVGKNHDFSAGL-IIGGKDLKE 187
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ R+ +L+ TPGRLL H++ S L+ML+LDEAD +LD+GF + I
Sbjct: 188 ESERIHH--INMLICTPGRLLQHMDETSYFYAS--DLQMLILDEADRILDMGFADTMNAI 243
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ LP++RQ+LLFSAT K +
Sbjct: 244 IENLPKKRQTLLFSATQTKSV 264
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 336 (123.3 bits), Expect = 5.2e-28, P = 5.2e-28
Identities = 98/282 (34%), Positives = 147/282 (52%)
Query: 312 DVKKMGSSASLGK----YDMKITKRVPLKSLEDEHDFEEQVELIRKEISXXXXXXXXXXX 367
DVKK L + ++ K K V ++ +E D EE+VE +K +
Sbjct: 4 DVKKKVLKRKLKQMKDGHEKKKAKEVVVEEPMEEED-EEEVEEEQKHQTEESSETKVSEF 62
Query: 368 XXXXXXPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT 427
L K ++ +KA+ G+ MT +Q ++ LEGKD + AKTG+
Sbjct: 63 LTKTTFASLEGK------VNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGS 116
Query: 428 GKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487
GK++AFLLPAIE + K V+I+ PTREL+ Q LL+ + +
Sbjct: 117 GKTLAFLLPAIELLHKLNWKQHNGTG----VIIVSPTRELSMQTYGVLSELLEGSN-LTY 171
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
++GG+ ++ +L ILVATPGRLLDH++N VR M K L++DEAD +L
Sbjct: 172 GLVMGGSNRSAEKDKLAKG-VSILVATPGRLLDHLQNTDNFLVRNM--KCLIIDEADRIL 228
Query: 548 DLGFRKDVENIVDCLPRRRQSLLFSAT-MPK--ELVLKREHT 586
D+GF +++ ++ LP++RQS+LFSAT PK ELV H+
Sbjct: 229 DIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHS 270
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 343 (125.8 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 78/209 (37%), Positives = 126/209 (60%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+S T+K ++ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E + K
Sbjct: 173 VSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIYKLK 232
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V+IL PTRELA Q L+ +H L ++GG+ + ++L
Sbjct: 233 FMPRNGTG----VIILSPTRELAMQTYGVLKELMNHHVHTYGL-IMGGSNRSAEAQKL-G 286
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
+ I+VATPGRLLDH++N G + L+ LV+DEAD +L++GF ++++ I+ LP+R
Sbjct: 287 NGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILEVGFEEEMKQIIKLLPKR 344
Query: 566 RQSLLFSATMPKE------LVLKREHTYI 588
RQ++LFSAT ++ + LK+E Y+
Sbjct: 345 RQTMLFSATQTRKVEDLAKISLKKEPLYV 373
Score = 37 (18.1 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 93 PMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQ 127
P E KA A+ + AED +D G ++E+
Sbjct: 112 PEGGTETKKAKAEEDVSVEAEDEDGQDTGEKEAEE 146
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 326 (119.8 bits), Expect = 5.3e-28, P = 5.3e-28
Identities = 80/225 (35%), Positives = 130/225 (57%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + + +++L G T +QE L L GKD + +KTG+GK++AFLLPA++
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V+ + S P VLIL PTRELA Q+ ++ L+ N ++++GG F
Sbjct: 62 RVISTRALSKRD--PR--VLILLPTRELAHQVYSQLRLLVANTQ-YKAISVLGGENFNDQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L +P +VATPGR+ DH+E K+ + L GL++L+LDEAD +LDLGF ++ I
Sbjct: 117 AKALAKEP-HFIVATPGRIADHLEQKN---LFLNGLELLILDEADRMLDLGFAPQLKAIN 172
Query: 560 DCLP-RRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVS 603
+ +RRQ+L+FSAT+ +H+ I+ + ++ P+ V+
Sbjct: 173 EAADHKRRQTLMFSATL--------DHSEINEIAAALLKNPLHVA 209
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 326 (119.8 bits), Expect = 5.3e-28, P = 5.3e-28
Identities = 80/225 (35%), Positives = 130/225 (57%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + + +++L G T +QE L L GKD + +KTG+GK++AFLLPA++
Sbjct: 2 QFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V+ + S P VLIL PTRELA Q+ ++ L+ N ++++GG F
Sbjct: 62 RVISTRALSKRD--PR--VLILLPTRELAHQVYSQLRLLVANTQ-YKAISVLGGENFNDQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L +P +VATPGR+ DH+E K+ + L GL++L+LDEAD +LDLGF ++ I
Sbjct: 117 AKALAKEP-HFIVATPGRIADHLEQKN---LFLNGLELLILDEADRMLDLGFAPQLKAIN 172
Query: 560 DCLP-RRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVS 603
+ +RRQ+L+FSAT+ +H+ I+ + ++ P+ V+
Sbjct: 173 EAADHKRRQTLMFSATL--------DHSEINEIAAALLKNPLHVA 209
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 339 (124.4 bits), Expect = 5.4e-28, P = 5.4e-28
Identities = 81/205 (39%), Positives = 120/205 (58%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ +MT +Q ++ LEG+D + AKTG+GK++AFL+P IE ++K
Sbjct: 180 TLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPR 239
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L + G R Q+ L
Sbjct: 240 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNG--IN 293
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 294 IIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTM 351
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 352 LFSATQTRKVEDLARISLKKEPLYV 376
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 337 (123.7 bits), Expect = 6.9e-28, P = 6.9e-28
Identities = 85/239 (35%), Positives = 130/239 (54%)
Query: 339 EDEHDFEE-QVELIRKEISXXXXXXXXXXXXXXXXXPILSQKRFDECGISPLTIKALTAA 397
EDE EE + + ++++ P K+F E G+S T++ +
Sbjct: 87 EDEEKKEEDEKDNVKEDSGKANVPDLPSVDAVSLPQPDGGPKKFTELGLSEKTLQGIKEM 146
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
G+ MT +Q+ T+ L G+D + AKTG+GK++AFL+PAIE +L A
Sbjct: 147 GFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE-MLSALRFKPRNGTG--- 202
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGI-GVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
V+++ PTRELA QI A LL H G++ +GG + + +L +L+ATPG
Sbjct: 203 VIVVSPTRELALQIFGVARELLTAHSQTYGIV--IGGANRRAEAEKLTKG-VNLLIATPG 259
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-RQSLLFSAT 574
RLLDH++N G + LK LV+DEAD +L++GF ++ I+ LP RQ++LFSAT
Sbjct: 260 RLLDHLQNTPGFVFK--NLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTMLFSAT 316
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 337 (123.7 bits), Expect = 9.3e-28, P = 9.3e-28
Identities = 81/205 (39%), Positives = 119/205 (58%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+P IE ++K
Sbjct: 182 TLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPR 241
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L + G R Q+ L
Sbjct: 242 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNG--IN 295
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 296 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTM 353
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 354 LFSATQTRKVEDLARISLKKEPLYV 378
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 328 (120.5 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 85/215 (39%), Positives = 120/215 (55%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S F + +K L++ GY QMT +Q TL L+GKD + +AKTG+GK+ AF L
Sbjct: 8 SSLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGL- 66
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
A+L + I +++CPTRELA Q+A E L + I +LTL GGT F
Sbjct: 67 ---ALLNKLEVKKFR----IQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPF 119
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
LE ++V TPGRL +H+ G +++L L +LVLDEAD +L++GF+ ++
Sbjct: 120 GPQIGSLEHG-AHVIVGTPGRLEEHVIK--G-TLQLDNLNLLVLDEADRMLEMGFQAALD 175
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTV 591
NIV P RQ+LLFSAT P ++ E D V
Sbjct: 176 NIVGRTPLDRQTLLFSATFPDQIKSISESIMTDPV 210
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 328 (120.5 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 85/215 (39%), Positives = 120/215 (55%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S F + +K L++ GY QMT +Q TL L+GKD + +AKTG+GK+ AF L
Sbjct: 8 SSLAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGL- 66
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
A+L + I +++CPTRELA Q+A E L + I +LTL GGT F
Sbjct: 67 ---ALLNKLEVKKFR----IQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPF 119
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
LE ++V TPGRL +H+ G +++L L +LVLDEAD +L++GF+ ++
Sbjct: 120 GPQIGSLEHG-AHVIVGTPGRLEEHVIK--G-TLQLDNLNLLVLDEADRMLEMGFQAALD 175
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTV 591
NIV P RQ+LLFSAT P ++ E D V
Sbjct: 176 NIVGRTPLDRQTLLFSATFPDQIKSISESIMTDPV 210
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 334 (122.6 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 84/231 (36%), Positives = 131/231 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +P + + A GY + T +Q + LEG D + A+TGTGK+ A+ LP I+
Sbjct: 3 FESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQK 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ST + + L+L PTRELA QIA E+ L I ++ GG
Sbjct: 63 ML-----STPR--GRVRTLVLAPTRELACQIA-ESFRSLGQRARIRECSIYGGVNMDQQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RRL S ++VA PGRLLDHI G ++ + G++ L++DEAD + D+GF+ D+++I+
Sbjct: 115 RRLRSG-VDVVVACPGRLLDHIWR--G-TIDICGVETLIIDEADRMFDMGFQPDIQSILK 170
Query: 561 CLPRRRQSLLFSATMPKE---LVLKREHTYIDTVGLGSVETPVKVSKYNIY 608
CL + Q+LLFSATMP E L L+ + + T+ +G+ + P +++Y
Sbjct: 171 CLVQPHQTLLFSATMPPEVRKLTLETQTNPV-TIQIGT-QAPASSVSHSVY 219
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 338 (124.0 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 80/199 (40%), Positives = 114/199 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E +S +KA+ G+ Q T +Q + L GKD + A TG+GK+ AFLLP +E
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S I VLIL PTRELA Q + + L I +VGG K +
Sbjct: 252 LLFRDSEYRA-----IRVLILLPTRELALQCQS-VMENLAQFSNITSCLIVGGLSNKAQE 305
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L P +++ATPGRL+DH+ N G+ L L++L+LDEAD LLD+GF+ ++ IV+
Sbjct: 306 VELRKSP-DVVIATPGRLIDHLLNAHGIG--LDDLEILILDEADRLLDMGFKDEINKIVE 362
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ++LFSAT+ E+
Sbjct: 363 SCPTNRQTMLFSATLNDEV 381
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 315 (115.9 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 82/247 (33%), Positives = 139/247 (56%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F++ + P +++L A G++ T +Q+ TL LE +D + +A TGTGK+ +FLLPA++
Sbjct: 2 QFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ + Q VLIL PTRELASQI A L + G+ + + GG +
Sbjct: 62 HLIDFPRRYSGQA----RVLILTPTRELASQIHRYACHLATDQ-GLNIAIITGGVPYAPQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ + ILVATPGRL+++++ K S + +L++DEAD +LD+GF V+ I
Sbjct: 117 EEALKGN-IDILVATPGRLMEYLD-KGKFSAE--SVDILIIDEADRMLDMGFSAVVKAIA 172
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYI-DTVGLGSVETPVKVSKYNIYVFVLVLSIKI 618
R+Q++LFSAT+ V++ + D + + V+ P K K I+ ++ + K
Sbjct: 173 LEAQGRKQNMLFSATLEGSGVIRFAREVLNDPIEI-DVDAPRK-EKAKIHQWIHLADDKD 230
Query: 619 QAFYIIC 625
F ++C
Sbjct: 231 HKFALLC 237
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 315 (115.9 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 82/247 (33%), Positives = 139/247 (56%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F++ + P +++L A G++ T +Q+ TL LE +D + +A TGTGK+ +FLLPA++
Sbjct: 2 QFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ + Q VLIL PTRELASQI A L + G+ + + GG +
Sbjct: 62 HLIDFPRRYSGQA----RVLILTPTRELASQIHRYACHLATDQ-GLNIAIITGGVPYAPQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ + ILVATPGRL+++++ K S + +L++DEAD +LD+GF V+ I
Sbjct: 117 EEALKGN-IDILVATPGRLMEYLD-KGKFSAE--SVDILIIDEADRMLDMGFSAVVKAIA 172
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYI-DTVGLGSVETPVKVSKYNIYVFVLVLSIKI 618
R+Q++LFSAT+ V++ + D + + V+ P K K I+ ++ + K
Sbjct: 173 LEAQGRKQNMLFSATLEGSGVIRFAREVLNDPIEI-DVDAPRK-EKAKIHQWIHLADDKD 230
Query: 619 QAFYIIC 625
F ++C
Sbjct: 231 HKFALLC 237
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 337 (123.7 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 76/202 (37%), Positives = 122/202 (60%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ F+ +S +K L + GY++ + +Q AT+ L GKD + A TG+GK+ AF++P I
Sbjct: 231 ENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPII 290
Query: 439 EAVL-KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
E +L K ++T+ V++L PTRELA Q+A + + GI VGG +
Sbjct: 291 ERLLYKPAKIASTR------VIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLR 344
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
++ L+S P I++ATPGR +DHI N + +V +++LV+DEAD +L+ GF+ ++
Sbjct: 345 QQEQMLKSRP-DIVIATPGRFIDHIRNSASFNVD--SVEILVMDEADRMLEEGFQDELNE 401
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I+ LP RQ+LLFSATM ++
Sbjct: 402 IMGLLPSNRQNLLFSATMNSKI 423
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 334 (122.6 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 83/242 (34%), Positives = 134/242 (55%)
Query: 336 KSLEDEHDFEEQVELIR-KEISXXXXXXXXXXXXXXXXXPILSQKRFDECGISPLTIKAL 394
K E+E + EE+VE+ KE+ P + F +S +K +
Sbjct: 86 KQEEEEEEEEEEVEVPEVKEVVEPEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGI 145
Query: 395 TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454
+ + T +Q A++ L GKD V A+TG+GK+ A+++P IE +L S+ST
Sbjct: 146 AELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTK---- 201
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
V+IL PTRELA Q+ L + + + + VGG + + +L++ P I++AT
Sbjct: 202 ---VIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP-DIVIAT 257
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSA 573
PGRL+DHI N SV+ +++LV+DEAD +L+ GF+ ++ I+ +P+ +RQ+LLFSA
Sbjct: 258 PGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSA 315
Query: 574 TM 575
TM
Sbjct: 316 TM 317
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 334 (122.6 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 83/242 (34%), Positives = 134/242 (55%)
Query: 336 KSLEDEHDFEEQVELIR-KEISXXXXXXXXXXXXXXXXXPILSQKRFDECGISPLTIKAL 394
K E+E + EE+VE+ KE+ P + F +S +K +
Sbjct: 86 KQEEEEEEEEEEVEVPEVKEVVEPEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGI 145
Query: 395 TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP 454
+ + T +Q A++ L GKD V A+TG+GK+ A+++P IE +L S+ST
Sbjct: 146 AELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTK---- 201
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
V+IL PTRELA Q+ L + + + + VGG + + +L++ P I++AT
Sbjct: 202 ---VIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP-DIVIAT 257
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPR-RRQSLLFSA 573
PGRL+DHI N SV+ +++LV+DEAD +L+ GF+ ++ I+ +P+ +RQ+LLFSA
Sbjct: 258 PGRLIDHIRNSPSFSVQ--DIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSA 315
Query: 574 TM 575
TM
Sbjct: 316 TM 317
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 314 (115.6 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 76/199 (38%), Positives = 109/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S ++A+ GY++ T VQ + L+ +D +V A+TGTGK+ F LP ++
Sbjct: 12 FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 71
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + P I LIL PTRELA Q+ E + + + + GG K
Sbjct: 72 LFVSRPPLQRSAKPVIRALILTPTRELAVQVF-ECVRAYGKYLPLKATVVHGGVSIKPQI 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L ILVATPGRLLD + N+ L+ L ++ VLDEAD +LD+GF D+ I+
Sbjct: 131 NHLRRG-VDILVATPGRLLDLV-NQGVLN--LSRVEFFVLDEADRMLDMGFLPDIRRILK 186
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT KE+
Sbjct: 187 LLPESRQNLLFSATFSKEI 205
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 314 (115.6 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 76/199 (38%), Positives = 109/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S ++A+ GY++ T VQ + L+ +D +V A+TGTGK+ F LP ++
Sbjct: 12 FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 71
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + P I LIL PTRELA Q+ E + + + + GG K
Sbjct: 72 LFVSRPPLQRSAKPVIRALILTPTRELAVQVF-ECVRAYGKYLPLKATVVHGGVSIKPQI 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L ILVATPGRLLD + N+ L+ L ++ VLDEAD +LD+GF D+ I+
Sbjct: 131 NHLRRG-VDILVATPGRLLDLV-NQGVLN--LSRVEFFVLDEADRMLDMGFLPDIRRILK 186
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT KE+
Sbjct: 187 LLPESRQNLLFSATFSKEI 205
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 337 (123.7 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 89/251 (35%), Positives = 136/251 (54%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K+F + +S T KAL + ++ T+VQ ++ L+GKD + A TG+GK++AFL+P +
Sbjct: 72 KKFAQFPLSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVL 131
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S T + +I+ PTRELA QI + K+HD L ++GG K
Sbjct: 132 EHLFMNKWSRTDG----VGAIIISPTRELAYQIFETLKKVGKHHDFSAGL-IIGGKNLKF 186
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
++ R+ D C IL+ TPGRLL H++ + M +MLVLDEAD LD+GF+K + +I
Sbjct: 187 ERTRM--DQCNILICTPGRLLQHMDENPLFNTSTM--EMLVLDEADRCLDMGFQKTLNSI 242
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKR----EHTYIDTVGLGSVETPVKVSKYNIYVFVLV 613
++ P RQ+LLFSAT + L R + Y+ G E P +K VL
Sbjct: 243 IENFPPVRQTLLFSATQTNTVQDLARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLA 302
Query: 614 LSIKIQAFYII 624
+ +Q Y++
Sbjct: 303 VPELLQQSYVV 313
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 328 (120.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 81/234 (34%), Positives = 133/234 (56%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+ AF LP +
Sbjct: 50 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
A+L+ T Q ++ L+L PTRELA QI+ E L + G+ +VGG
Sbjct: 110 NALLE-----TPQR---LFALVLTPTRELAFQIS-EQFEALGSSIGVQSAVIVGGIDSMS 160
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++ F +V+ I
Sbjct: 161 QSLALAKKP-HIVIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMDFETEVDKI 217
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKRE--HTYIDTVGLGSVETPVKVSKYNIYV 609
+ +PR R++ LFSATM K++ L+R + +T K+ +Y +++
Sbjct: 218 LKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFI 271
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 330 (121.2 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 85/243 (34%), Positives = 135/243 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++ + +A G+ + T++Q + L+G+D + A+TG+GK+ AF +P +++
Sbjct: 81 FKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQS 140
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++ L+L PTRELA QIA E L + G+ +VGG
Sbjct: 141 LLACAQR--------LHTLVLTPTRELAFQIA-EQFDALGSSIGVKTAVIVGGIDMMSQA 191
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L P +++ATPGRL+DH+EN G ++R LK LV+DEAD +L++ F +V+ I+
Sbjct: 192 LVLAKKP-HVVIATPGRLIDHMENTKGFNLR--ALKYLVMDEADRILNMDFESEVDKILK 248
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKIQA 620
+PR R++ LFSATM K+ V K + +++ PVK S + Y V K+Q
Sbjct: 249 VIPRDRRTFLFSATMTKK-VQKLQRA--------ALQDPVKCSVSSKYATV----DKLQQ 295
Query: 621 FYI 623
FYI
Sbjct: 296 FYI 298
Score = 37 (18.1 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 76 TKLFDKADPDSETNQHKPMSPDE 98
T AD + ETN H P +E
Sbjct: 35 TNTHTPADTE-ETNTHTPADTEE 56
Score = 37 (18.1 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 76 TKLFDKADPDSETNQHKPMSPDE 98
T AD + ETN H P +E
Sbjct: 24 TNTHTPADTE-ETNTHTPADTEE 45
Score = 37 (18.1 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 76 TKLFDKADPDSETNQHKPMSPDE 98
T AD + ETN H P +E
Sbjct: 13 TNTHTPADTE-ETNTHTPADTEE 34
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 331 (121.6 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 79/204 (38%), Positives = 121/204 (59%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+++ F + G++ +KA+T +GY T +Q + L G D A+TGTGK+ AF+L
Sbjct: 1 MTETTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P I+ + +T + ++ P LILCPTRELA+Q+A E + + + L+GG
Sbjct: 61 PMIQRL--STGRARARM-PRC--LILCPTRELAAQVA-ENFEKYGKYLKLTMALLIGGVS 114
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
FK +Q L +L+ATPGRL+D + L +MG++ L++DEAD +LD+GF D+
Sbjct: 115 FK-EQETLLQRGVDVLIATPGRLMDQFDRGKLL---MMGVETLIIDEADRMLDMGFIPDI 170
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E I LP RQ+LLFSAT P ++
Sbjct: 171 EKICAKLPANRQTLLFSATFPTDI 194
>FB|FBgn0037561 [details] [associations]
symbol:CG9630 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P10081 KO:K14809
GeneTree:ENSGT00550000074969 EMBL:AY051513 RefSeq:NP_649777.1
UniGene:Dm.1101 ProteinModelPortal:Q9VHU1 SMR:Q9VHU1 IntAct:Q9VHU1
STRING:Q9VHU1 PaxDb:Q9VHU1 PRIDE:Q9VHU1 EnsemblMetazoa:FBtr0081866
GeneID:40974 KEGG:dme:Dmel_CG9630 UCSC:CG9630-RA
FlyBase:FBgn0037561 InParanoid:Q9VHU1 OMA:CACVEYW OrthoDB:EOG4TDZ1Q
PhylomeDB:Q9VHU1 GenomeRNAi:40974 NextBio:821545 Bgee:Q9VHU1
GermOnline:CG9630 Uniprot:Q9VHU1
Length = 613
Score = 333 (122.3 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 90/245 (36%), Positives = 136/245 (55%)
Query: 376 LSQKRFDECGISPLT---IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
+S+K++ PL+ ++ + + G+ QMT VQ A + L KD +A TG+GK++A
Sbjct: 1 MSRKKWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLA 60
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT--- 489
FL+P +E +L+ T I L++ PTRELA QI+ E +A H+ + L
Sbjct: 61 FLVPMLE-ILQRRHKETPWGPKEIGALVISPTRELARQIS-EVLAQFLEHEDLEHLNQQL 118
Query: 490 LVGGTRFKVDQRRLESD-PCQILVATPGRLLDHIENKS---GLSVRLMGLKMLVLDEADH 545
+VGG + D L + PC ILV TPGRL D + K L+ ++ L+ LVLDEAD
Sbjct: 119 IVGGNSIEEDIATLRRETPC-ILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADR 177
Query: 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL--VLK---REHTYIDTVGLGSVETPV 600
LLDLGF+ V NI+ LPR+R++ LFSAT E+ +++ R + SV TP
Sbjct: 178 LLDLGFKTSVNNILGYLPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPA 237
Query: 601 KVSKY 605
++ +
Sbjct: 238 RLQNF 242
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 308 (113.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 76/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + +L GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ S + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 432 RHIMDQRSLEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 487
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + SG L + +VLDEAD + D+GF V I
Sbjct: 488 QIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAM 567
Score = 79 (32.9 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 34/139 (24%), Positives = 59/139 (42%)
Query: 218 RRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKC 277
RR S +R+ R+ G +R + GNK+K A N ++E DS S+ KK
Sbjct: 82 RRRSRSRDRRRSRSRSRGRRSRSSS---PGNKSKK-AENRSRSKEKTDSGESSKEKKKDK 137
Query: 278 FVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLK- 336
+ +++ +VE WR+ ++ + ++G+ +I + K
Sbjct: 138 DDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Query: 337 -SLEDEHDFEEQVELIRKE 354
SLED+ D E+ KE
Sbjct: 198 WSLEDDDDDEDDPAEAEKE 216
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 308 (113.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 76/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + +L GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ S + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 432 RHIMDQRSLEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 487
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + SG L + +VLDEAD + D+GF V I
Sbjct: 488 QIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAM 567
Score = 79 (32.9 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 34/139 (24%), Positives = 59/139 (42%)
Query: 218 RRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKC 277
RR S +R+ R+ G +R + GNK+K A N ++E DS S+ KK
Sbjct: 82 RRRSRSRDRRRSRSRSRGRRSRSSS---PGNKSKK-AENRSRSKEKTDSGESSKEKKKDK 137
Query: 278 FVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLK- 336
+ +++ +VE WR+ ++ + ++G+ +I + K
Sbjct: 138 DDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Query: 337 -SLEDEHDFEEQVELIRKE 354
SLED+ D E+ KE
Sbjct: 198 WSLEDDDDDEDDPAEAEKE 216
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 308 (113.5 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 76/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + +L GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ S + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 432 RHIMDQRSLEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 487
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + SG L + +VLDEAD + D+GF V I
Sbjct: 488 QIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAM 567
Score = 79 (32.9 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 34/139 (24%), Positives = 59/139 (42%)
Query: 218 RRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKC 277
RR S +R+ R+ G +R + GNK+K A N ++E DS S+ KK
Sbjct: 82 RRRSRSRDRRRSRSRSRGRRSRSSS---PGNKSKK-AENRSRSKEKTDSGESSKEKKKDK 137
Query: 278 FVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLK- 336
+ +++ +VE WR+ ++ + ++G+ +I + K
Sbjct: 138 DDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Query: 337 -SLEDEHDFEEQVELIRKE 354
SLED+ D E+ KE
Sbjct: 198 WSLEDDDDDEDDPAEAEKE 216
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 313 (115.2 bits), Expect = 2.1e-27, P = 2.1e-27
Identities = 73/198 (36%), Positives = 121/198 (61%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + + P+ ++A+ G+ + T+VQ + L+G+D + A TGTGK+ AF++PA+
Sbjct: 3 KTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ +L + P +LIL PTRELA Q+A +A AL KN + + T+ GG +++
Sbjct: 63 QYLL----DFPRRKAGPARILILTPTRELAMQVAEQAQALAKN-TRLNIFTITGGVQYQ- 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ + + I+VATPGRLL++I+ + R ++ L+LDEAD +LD+GF V+ +
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAER-FDCR--AIEWLILDEADRMLDMGFGPTVDRL 173
Query: 559 -VDCLPRRRQSLLFSATM 575
+C R+Q+LLFSAT+
Sbjct: 174 STECR-WRKQTLLFSATL 190
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 313 (115.2 bits), Expect = 2.1e-27, P = 2.1e-27
Identities = 73/198 (36%), Positives = 121/198 (61%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + + P+ ++A+ G+ + T+VQ + L+G+D + A TGTGK+ AF++PA+
Sbjct: 3 KTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ +L + P +LIL PTRELA Q+A +A AL KN + + T+ GG +++
Sbjct: 63 QYLL----DFPRRKAGPARILILTPTRELAMQVAEQAQALAKN-TRLNIFTITGGVQYQ- 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ + + I+VATPGRLL++I+ + R ++ L+LDEAD +LD+GF V+ +
Sbjct: 117 EHADILATTQDIVVATPGRLLEYIDAER-FDCR--AIEWLILDEADRMLDMGFGPTVDRL 173
Query: 559 -VDCLPRRRQSLLFSATM 575
+C R+Q+LLFSAT+
Sbjct: 174 STECR-WRKQTLLFSATL 190
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 333 (122.3 bits), Expect = 2.1e-27, P = 2.1e-27
Identities = 83/230 (36%), Positives = 133/230 (57%)
Query: 383 ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442
E GISP +KAL++ G ++ +Q+A L +EG+D + +A+TGTGK++AF +P I+ ++
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 443 KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
K + P L+L PTRELA Q+ E ++ + + L GGT R+
Sbjct: 168 KYNAKHGRGRNP--LCLVLAPTRELARQVEKE---FRESAPSLDTICLYGGTPIGQQMRQ 222
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L+ + V TPGR++D + K G ++ L ++ +VLDEAD +L +GF +DVE I++ L
Sbjct: 223 LDYG-VDVAVGTPGRVIDLM--KRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKL 278
Query: 563 PRRRQSLLFSATMP---KELVLK--REHTYIDTVGLGSVETPVKVSKYNI 607
P +RQS++FSATMP + L K +D VG + ++ Y+I
Sbjct: 279 PEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSI 328
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 335 (123.0 bits), Expect = 2.4e-27, P = 2.4e-27
Identities = 85/224 (37%), Positives = 125/224 (55%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I K F + IS T+K L + +I++T +Q ++ L+G D + AKTG+GK++AFL
Sbjct: 37 ITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFL 96
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+P IE + + T+ + LI+ PTRELA QI E + + +H ++GG
Sbjct: 97 VPVIEKLYR---EKWTEF-DGLGALIISPTRELAMQIY-EVLTKIGSHTSFSAGLVIGGK 151
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
K + R+ IL+ TPGR+L H++ GL+ L+MLVLDEAD LD+GF+K
Sbjct: 152 DVKFELERISR--INILIGTPGRILQHLDQAVGLNTS--NLQMLVLDEADRCLDMGFKKT 207
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV-LKR-EHTYIDTVGLGSV 596
++ IV L RQ+LLFSAT + + L R T TVG V
Sbjct: 208 LDAIVSTLSPSRQTLLFSATQSQSVADLARLSLTDYKTVGTHDV 251
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 322 (118.4 bits), Expect = 2.7e-27, P = 2.7e-27
Identities = 86/217 (39%), Positives = 122/217 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E ++P +KA+ A GY + T VQ A + LE D + A+TGTGK+ AF+LPA++
Sbjct: 3 FAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L + + P VL+L PTRELA Q+ +A+ + ++GG + Q
Sbjct: 63 -LSSPPQGPGR--GP-RVLVLTPTRELAQQVT-DAVRTYGAFMRVRSGAILGGMPYHA-Q 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL S P +VATPGRL+D ++ +S + L L++LVLDEAD +LD+GF DV+ I
Sbjct: 117 LRLLSAPVDFIVATPGRLVDLLDRRS---LDLSRLELLVLDEADRMLDMGFSDDVDRIAA 173
Query: 561 CLPRRRQSLLFSATMPKELV-----LKREHTYIDTVG 592
P RQ+LLF+ATM + L RE ID G
Sbjct: 174 ASPATRQTLLFTATMDSAMARLAGRLLREPERIDIAG 210
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 337 (123.7 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 81/205 (39%), Positives = 119/205 (58%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+P IE ++K
Sbjct: 194 TLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPR 253
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
VLIL PTRELA Q L+ +H L + G R Q+ L
Sbjct: 254 NGTG----VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNG--IN 307
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ++
Sbjct: 308 IVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTM 365
Query: 570 LFSATMPKE------LVLKREHTYI 588
LFSAT ++ + LK+E Y+
Sbjct: 366 LFSATQTRKVEDLARISLKKEPLYV 390
Score = 37 (18.1 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 119 DDGPVKSEQRPRSGAEANQRPRLAG 143
D P + + G EA + P AG
Sbjct: 121 DTEPDPKKAKTEEGTEAREEPEGAG 145
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 328 (120.5 bits), Expect = 3.7e-27, P = 3.7e-27
Identities = 76/196 (38%), Positives = 118/196 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++++ + G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP ++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T + Q + ++ PTRELA Q+ E + K H + +L + GG
Sbjct: 64 V--DTHKESVQGI------VIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDINRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+V TPGR+LDHI K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKHP-HIIVGTPGRILDHINRKT---LRLQNVETVVLDEADEMLNMGFIEDIEAILT 170
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 171 DVPETHQTLLFSATMP 186
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 328 (120.5 bits), Expect = 3.8e-27, P = 3.8e-27
Identities = 76/196 (38%), Positives = 118/196 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++++ + G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP ++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T + Q + ++ PTRELA Q+ E + K H + +L + GG
Sbjct: 64 V--DTHKESVQGI------VIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDINRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+V TPGR+LDHI K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKHP-HIIVGTPGRILDHINRKT---LRLQNVETVVLDEADEMLNMGFIEDIEAILT 170
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 171 DVPETHQTLLFSATMP 186
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 328 (120.5 bits), Expect = 3.8e-27, P = 3.8e-27
Identities = 76/196 (38%), Positives = 118/196 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++++ + G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP ++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T + Q + ++ PTRELA Q+ E + K H + +L + GG
Sbjct: 64 V--DTHKESVQGI------VIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDINRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+V TPGR+LDHI K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKHP-HIIVGTPGRILDHINRKT---LRLQNVETVVLDEADEMLNMGFIEDIEAILT 170
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 171 DVPETHQTLLFSATMP 186
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 328 (120.5 bits), Expect = 3.8e-27, P = 3.8e-27
Identities = 76/196 (38%), Positives = 118/196 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++++ + G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP ++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T + Q + ++ PTRELA Q+ E + K H + +L + GG
Sbjct: 64 V--DTHKESVQGI------VIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDINRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+V TPGR+LDHI K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKHP-HIIVGTPGRILDHINRKT---LRLQNVETVVLDEADEMLNMGFIEDIEAILT 170
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 171 DVPETHQTLLFSATMP 186
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 328 (120.5 bits), Expect = 3.8e-27, P = 3.8e-27
Identities = 76/196 (38%), Positives = 118/196 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++++ + G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP ++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T + Q + ++ PTRELA Q+ E + K H + +L + GG
Sbjct: 64 V--DTHKESVQGI------VIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDINRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+V TPGR+LDHI K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKHP-HIIVGTPGRILDHINRKT---LRLQNVETVVLDEADEMLNMGFIEDIEAILT 170
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 171 DVPETHQTLLFSATMP 186
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 328 (120.5 bits), Expect = 3.8e-27, P = 3.8e-27
Identities = 76/196 (38%), Positives = 118/196 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++++ + G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP ++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T + Q + ++ PTRELA Q+ E + K H + +L + GG
Sbjct: 64 V--DTHKESVQGI------VIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDINRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+V TPGR+LDHI K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKHP-HIIVGTPGRILDHINRKT---LRLQNVETVVLDEADEMLNMGFIEDIEAILT 170
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 171 DVPETHQTLLFSATMP 186
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 328 (120.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 76/196 (38%), Positives = 118/196 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++++ + G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP ++
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T + Q + ++ PTRELA Q+ E + K H + +L + GG
Sbjct: 64 V--DTHKESVQGI------VIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDINRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+V TPGR+LDHI K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKHP-HIIVGTPGRILDHINRKT---LRLQNVETVVLDEADEMLNMGFIEDIEAILT 170
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 171 DVPETHQTLLFSATMP 186
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 331 (121.6 bits), Expect = 4.9e-27, P = 4.9e-27
Identities = 76/209 (36%), Positives = 124/209 (59%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+S T++A+ G+ +MT +Q +L+ L+G+D V A+TG+GK++AFL+PA+E + K
Sbjct: 194 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLR 253
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V+I+ PTREL+ Q L+ +H L + GG+ +V+ +L
Sbjct: 254 FMPRNGTG----VIIISPTRELSMQTFGVLKELMAHHHHTYGLVM-GGSNRQVESEKLGK 308
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
ILVATPGRLLDH++N + L+ L++DE D +L++GF ++++ I++ LP+R
Sbjct: 309 G-INILVATPGRLLDHLQNSPDFLYK--NLQCLIIDEVDRILEIGFEEELKQIINLLPKR 365
Query: 566 RQSLLFSATMP------KELVLKREHTYI 588
RQ++LFSAT +L LK E Y+
Sbjct: 366 RQTMLFSATQTARIEALSKLALKSEPIYV 394
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 329 (120.9 bits), Expect = 5.8e-27, P = 5.8e-27
Identities = 81/197 (41%), Positives = 119/197 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + A+ + G+ T +Q T+ L GKD + +A+TGTGK+ AF LPA+
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALL-KNHDGIGVLTLVGGTRFKVD 499
+ TS QL ++L PTRELA Q+A EAI K+ G+ V TL GG +
Sbjct: 77 I--DTSIKKPQL------MVLAPTRELAMQVA-EAIESFGKDMKGLRVATLYGGQSYGPQ 127
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++LE Q++V TPGRL+DH+ KS ++L L++ VLDEAD +L++GF +D++ I+
Sbjct: 128 FQQLERG-AQVVVGTPGRLMDHLRRKS---LKLDELRVCVLDEADEMLNMGFLEDIQWIL 183
Query: 560 DCLPRRRQSLLFSATMP 576
D +P+ Q LFSATMP
Sbjct: 184 DHIPKTAQMCLFSATMP 200
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 319 (117.4 bits), Expect = 6.3e-27, P = 6.3e-27
Identities = 80/225 (35%), Positives = 123/225 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G P + AAGY T +Q + A + G+D + A+TGTGK+ AF LP +
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + L++ PTRELA QI ++ L + +T+ GG
Sbjct: 63 LQQGERGR-------VRALVIAPTRELAEQIN-DSFVTLGRQTRLRSVTVYGGVGVNPQV 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L++ +++VA PGRLLDHI G ++ L L++LVLDEAD + D+GF D+ ++
Sbjct: 115 QKLKAG-AEVVVACPGRLLDHIAQ--G-TIDLSRLEVLVLDEADQMFDMGFLPDIRRVLK 170
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYID--TVGLGSVETPVKVS 603
LP RRQ+LLFSATMP ++ + +D TV +G+V V V+
Sbjct: 171 HLPPRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTVA 215
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 331 (121.6 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 75/195 (38%), Positives = 113/195 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F +S +K L+ G+ T++Q+ T+ L GKD V A TG+GK+ AF++P +E
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L VP VLILCPTRELA Q + A + D I V +GG K+ +
Sbjct: 321 LLYRPKK-----VPTTRVLILCPTRELAMQCHSVATKIASFTD-IMVCLCIGGLSLKLQE 374
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L P I++ATPGR +DH+ N G +V ++++V+DEAD +L+ GF ++ I+
Sbjct: 375 QELRKRP-DIVIATPGRFIDHMRNSQGFTVE--NIEIMVMDEADRMLEDGFADELNEIIQ 431
Query: 561 CLPRRRQSLLFSATM 575
P+ RQ++LFSATM
Sbjct: 432 ACPKSRQTMLFSATM 446
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 320 (117.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 78/198 (39%), Positives = 118/198 (59%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S +KA+ G+ + T +Q T+ L+ KD + +A+TGTGK+ AF +P +E
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA--IALLKNHDGIGVLTLVGGTRFKV 498
V S+ + L++ PTRELA Q++ E I +K + VL + GG +
Sbjct: 64 VNVKNSA--------VQALVVAPTRELAIQVSEELYKIGAVKR---VRVLPIYGGQDIER 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P ++V TPGR++DHI N+ L RL + +VLDEAD +L++GF +D+E I
Sbjct: 113 QIRALKKHP-HVIVGTPGRIIDHI-NRGTL--RLEHVHTVVLDEADEMLNMGFIEDIEAI 168
Query: 559 VDCLPRRRQSLLFSATMP 576
+ +P RQ+LLFSATMP
Sbjct: 169 LSHVPAERQTLLFSATMP 186
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 325 (119.5 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 92/264 (34%), Positives = 139/264 (52%)
Query: 324 KYDMKITKRVPLKSLEDEHDFEEQ---------VELIRKEISXXXXXXXXXXXXXXXXXP 374
K D KI + +P ED+++ EE+ VE +E+
Sbjct: 27 KNDKKIAEELPQD--EDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASS 84
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
++F + +S KA+ G+ MT +Q+ ++ L G+D + AKTG+GK++AFL
Sbjct: 85 TSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
Query: 435 LPAIEAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK-NHDGIGVLTLV 491
+P IE + LK + T V+I+ PTRELA QI A LLK +H G++ +
Sbjct: 145 IPTIEMLYALKFKPRNGTG------VIIISPTRELALQIFGVAKELLKYHHQTFGIV--I 196
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG + + +L +LVATPGRLLDH++N G R L+ LV+DEAD +L++GF
Sbjct: 197 GGANRRAEADKLVKG-VNLLVATPGRLLDHLQNTKGFVFR--NLRSLVIDEADRILEIGF 253
Query: 552 RKDVENIVDCLP-RRRQSLLFSAT 574
++ I+ LP RQ+LLFSAT
Sbjct: 254 EDEMRQIMKILPSENRQTLLFSAT 277
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 308 (113.5 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 76/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + +L GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ S + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 432 RHIMDQRSLEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 487
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + SG L + +VLDEAD + D+GF V I
Sbjct: 488 QIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAM 567
Score = 71 (30.1 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 32/139 (23%), Positives = 57/139 (41%)
Query: 218 RRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKC 277
RR S +R+ R+ G +R + GNK+K N ++E D S+ KK
Sbjct: 82 RRRSRSRDRRRSRSRSRGRRSRSSS---PGNKSKK-TENRSRSKEKTDGGESSKEKKKDK 137
Query: 278 FVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLK- 336
+ +++ +VE WR+ ++ + ++G+ +I + K
Sbjct: 138 DDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Query: 337 -SLEDEHDFEEQVELIRKE 354
SLED+ D E+ KE
Sbjct: 198 WSLEDDDDDEDDPAEAEKE 216
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 318 (117.0 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 77/190 (40%), Positives = 113/190 (59%)
Query: 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT 450
++ L++ GY +MT +Q +L A L G+D + + KTG+GK+ AF L +L
Sbjct: 13 LENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGL----GLLNKLDVKRF 68
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
+ I L+LCPTRELA Q+A E L + + VLTL GG LE I
Sbjct: 69 R----IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHG-AHI 123
Query: 511 LVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
+V TPGR++DH++ N+ LS L MLVLDEAD +L++GF+ ++ I++ PR RQ+L
Sbjct: 124 IVGTPGRIVDHLDRNRLDLS----NLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTL 179
Query: 570 LFSATMPKEL 579
LFSAT P+++
Sbjct: 180 LFSATFPEQI 189
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 318 (117.0 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 77/190 (40%), Positives = 113/190 (59%)
Query: 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT 450
++ L++ GY +MT +Q +L A L G+D + + KTG+GK+ AF L +L
Sbjct: 13 LENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGL----GLLNKLDVKRF 68
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
+ I L+LCPTRELA Q+A E L + + VLTL GG LE I
Sbjct: 69 R----IQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHG-AHI 123
Query: 511 LVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
+V TPGR++DH++ N+ LS L MLVLDEAD +L++GF+ ++ I++ PR RQ+L
Sbjct: 124 IVGTPGRIVDHLDRNRLDLS----NLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTL 179
Query: 570 LFSATMPKEL 579
LFSAT P+++
Sbjct: 180 LFSATFPEQI 189
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 324 (119.1 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 81/198 (40%), Positives = 119/198 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ S T+KA+ G+ +MT+VQ T+ L G+D + AKTG+GK++AFL+PAIE
Sbjct: 110 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 169
Query: 441 V--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI-GVLTLVGGTRFK 497
+ LK + T V+I+ PTRELA QI A L++ H G++ +GG +
Sbjct: 170 LYSLKIKPRNGTA------VIIITPTRELALQIFGVARELMQFHSQTCGIV--IGGADRR 221
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ +L +LVATPGRLLDH++N + LK LV+DEAD +L++GF +++
Sbjct: 222 QEATKLAKG-VNLLVATPGRLLDHLKNTQFV---FSNLKALVIDEADRILEIGFEDEMKQ 277
Query: 558 IVDCLPRR-RQSLLFSAT 574
I+ LP RQS+LFSAT
Sbjct: 278 IIKVLPNENRQSMLFSAT 295
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 324 (119.1 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 81/198 (40%), Positives = 119/198 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ S T+KA+ G+ +MT+VQ T+ L G+D + AKTG+GK++AFL+PAIE
Sbjct: 110 FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 169
Query: 441 V--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI-GVLTLVGGTRFK 497
+ LK + T V+I+ PTRELA QI A L++ H G++ +GG +
Sbjct: 170 LYSLKIKPRNGTA------VIIITPTRELALQIFGVARELMQFHSQTCGIV--IGGADRR 221
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ +L +LVATPGRLLDH++N + LK LV+DEAD +L++GF +++
Sbjct: 222 QEATKLAKG-VNLLVATPGRLLDHLKNTQFV---FSNLKALVIDEADRILEIGFEDEMKQ 277
Query: 558 IVDCLPRR-RQSLLFSAT 574
I+ LP RQS+LFSAT
Sbjct: 278 IIKVLPNENRQSMLFSAT 295
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 327 (120.2 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 80/239 (33%), Positives = 137/239 (57%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S +F + I+ T+K L A ++ +T +Q+ T+ L+G+D + A+TG+GK++AFL+P
Sbjct: 46 SVSQFSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIP 105
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
IE++++ + T+ + LI+ PTRELA QI E + + ++ + GG
Sbjct: 106 VIESLIR---NKITEY-DGLAALIVSPTRELAVQIF-EVLTKIGKYNTFSAGLVTGGKDV 160
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ ++ R+ ILV TPGR+ H+ G+ L++LVLDEAD LD+GF+K ++
Sbjct: 161 QFEKERVSR--MNILVGTPGRISQHLNEAVGMETS--NLQVLVLDEADRCLDMGFKKQID 216
Query: 557 NIVDCLPRRRQSLLFSATMPKEL--VLKREHTYIDTVGLGSVE----TPVKVSKYNIYV 609
NI+ LP RQ+LLFSAT + + + + T + +G+ S + TP + +Y + V
Sbjct: 217 NILGHLPTTRQTLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKV 275
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 326 (119.8 bits), Expect = 2.2e-26, P = 2.2e-26
Identities = 83/244 (34%), Positives = 134/244 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E ++ T AL A +I +T +Q+ + + L+G+D + AKTG+GK++AF++P IE
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + +S L L++ PTRELA Q + + + H L ++GG +K ++
Sbjct: 101 LYRKKWTSLDGLG----ALVISPTRELAIQTFETLVKIGRLHSFSAGL-IIGGNNYKEEK 155
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL ILV TPGRLL HI+ ++ GL+ML+LDEAD +LD+GFR ++ IV
Sbjct: 156 ERLSR--MNILVCTPGRLLQHIDQ--AVNFDTSGLQMLILDEADRILDMGFRTTLDAIVS 211
Query: 561 CLPRRRQSLLFSATMPKEL--VLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKI 618
LP RQ++LFSAT K + + + D + + +T S N + + L+ K+
Sbjct: 212 SLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKL 271
Query: 619 QAFY 622
+
Sbjct: 272 DILF 275
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 308 (113.5 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 76/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + +L GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ S + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 432 RHIMDQRSLEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 487
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + SG L + +VLDEAD + D+GF V I
Sbjct: 488 QIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAM 567
Score = 69 (29.3 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 31/139 (22%), Positives = 59/139 (42%)
Query: 218 RRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKC 277
RR S +R+ R+ G +R + G+K+K A N ++E + + S+ KK
Sbjct: 82 RRRSRSRDRRRSRSRSRGRRSRSSS---PGSKSKK-AENRSRSKEKAEGGDSSKEKKKDK 137
Query: 278 FVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLK- 336
+ +++ +VE WR+ ++ + ++G+ +I + K
Sbjct: 138 DDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Query: 337 -SLEDEHDFEEQVELIRKE 354
SLED+ D E+ KE
Sbjct: 198 WSLEDDDDDEDDPAEAEKE 216
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 308 (113.5 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 76/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + +L GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ S + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 432 RHIMDQRSLEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 487
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + SG L + +VLDEAD + D+GF V I
Sbjct: 488 QIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAM 567
Score = 69 (29.3 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 31/139 (22%), Positives = 59/139 (42%)
Query: 218 RRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKC 277
RR S +R+ R+ G +R + G+K+K A N ++E + + S+ KK
Sbjct: 82 RRRSRSRDRRRSRSRSRGRRSRSSS---PGSKSKK-AENRSRSKEKAEGGDSSKEKKKDK 137
Query: 278 FVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLK- 336
+ +++ +VE WR+ ++ + ++G+ +I + K
Sbjct: 138 DDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Query: 337 -SLEDEHDFEEQVELIRKE 354
SLED+ D E+ KE
Sbjct: 198 WSLEDDDDDEDDPAEAEKE 216
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 324 (119.1 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 80/199 (40%), Positives = 116/199 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ ++AL GY + + +Q + L G+D + A+TG+GK+ AF LP ++
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ +L P +L+L PTRELA Q+A K+ G+ V+ L GG R+ V
Sbjct: 68 L-------DPELKAP-QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L P QI+V TPGRLLDH+ K G ++ L L LVLDEAD +L +GF +DVE I+
Sbjct: 120 RALRQGP-QIVVGTPGRLLDHL--KRG-TLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P Q+ LFSATMP+ +
Sbjct: 176 QIPEGHQTALFSATMPEAI 194
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 323 (118.8 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 83/230 (36%), Positives = 128/230 (55%)
Query: 383 ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442
+ GISP +KAL G ++ +Q+A L +EG+D + +A+TGTGK++AF +P I+ ++
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 443 KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
K + P L+L PTRELA Q+ E ++ + + L GGT R
Sbjct: 180 KFNAKHGRGKNPQC--LVLAPTRELARQVEKE---FRESAPSLDTICLYGGTPIGQQMRE 234
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L + V TPGR++D + K G ++ L ++ +VLDEAD +L +GF +DVE I+ L
Sbjct: 235 LNYG-IDVAVGTPGRIIDLM--KRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKL 290
Query: 563 PRRRQSLLFSATMP---KELVLK--REHTYIDTVGLGSVETPVKVSKYNI 607
P +RQS++FSATMP + L K ID VG + ++ Y+I
Sbjct: 291 PAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSI 340
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 325 (119.5 bits), Expect = 2.9e-26, P = 2.9e-26
Identities = 77/200 (38%), Positives = 114/200 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ +S +KA + AGY T +Q+A + L GKD A TGTGK+ AF+LP +E
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 441 VL-KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ + +S T+ VL+L PTRELA Q+ + L + V GG K
Sbjct: 210 MIYRPKGASCTR------VLVLVPTRELAIQVF-QVFRKLSTFIQLEVCLCAGGLDLKAQ 262
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L S P ++VATPGRL+DH+ N S L +++LVLDEAD +L+ FR + ++
Sbjct: 263 EAALRSGP-DVVVATPGRLIDHLHNSP--SFNLSNIEVLVLDEADRMLEEAFRDQMNELI 319
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ RQ+LLFSATM +E+
Sbjct: 320 RLCAQNRQTLLFSATMTEEI 339
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 317 (116.6 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 77/210 (36%), Positives = 124/210 (59%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI-E 439
F+E + K + +GY+++T +Q+ ++ + G+D + A+TG+GK+ AFLLP +
Sbjct: 288 FEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAH 347
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++K SS Q + +I+ PTREL +QI +A + + + GGT+
Sbjct: 348 LMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDA-RKFSYGTCVRPVVIYGGTQMFHS 406
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+++ S+ C IL ATPGRLLD I + + L L+ LVLDEAD +LD+GFR+D+EN++
Sbjct: 407 LKQI-SEGCNILCATPGRLLDVIRKEK---IGLTKLRYLVLDEADRMLDMGFREDIENLL 462
Query: 560 DC--LPRR--RQSLLFSATMPKELV-LKRE 584
+P + RQ+L+FSAT P + L RE
Sbjct: 463 KSSGMPSKEERQTLMFSATFPSSIQSLARE 492
Score = 52 (23.4 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 23/87 (26%), Positives = 32/87 (36%)
Query: 202 NDGETVIPSRNVMDFVRRAYFSG-TDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLG-N 259
+D T+ +R F RR F+ T R G ++ G + GN+ F N G N
Sbjct: 120 DDNRTIDDNRRRGGFQRRGGFNDETSGRGRRGVRGGTSFSGFGREDGNEQSGFTSNDGFN 179
Query: 260 NRENGDSKNMSEFMKKKCFVGKRRFKR 286
N +G F G R R
Sbjct: 180 NETSGFGSGRRGSRGDSSFSGDRESDR 206
Score = 42 (19.8 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 228 RNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENG 264
+NF ++ + +AG D + R GN R G
Sbjct: 61 QNFEFSERGFGKQRAGSDANQNFESSERGFGNRRGKG 97
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 325 (119.5 bits), Expect = 3.4e-26, P = 3.4e-26
Identities = 77/195 (39%), Positives = 112/195 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F +S ++ LT+ G+ + T +Q T+ L GKD V A TG+GK+ AF++P +E
Sbjct: 257 FQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILER 316
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L VP V+IL PTRELA Q A A L +H I VGG KV +
Sbjct: 317 LLYRPKK-----VPTSRVVILAPTRELAIQCHAVATKLA-SHTDIKFCLAVGGLSLKVQE 370
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L P +++ATPGR +DH+ N + +V + ++LVLDEAD +L+ GF ++ I+
Sbjct: 371 SELRLRP-DVIIATPGRFIDHMRNSASFAVDTV--EILVLDEADRMLEDGFADELNEILT 427
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ++LFSATM
Sbjct: 428 TLPKSRQTMLFSATM 442
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 324 (119.1 bits), Expect = 4.7e-26, P = 4.7e-26
Identities = 84/232 (36%), Positives = 129/232 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + IS T+ LT++ + +T +Q +S L+G+D + AKTG+GK++AFL+P +E
Sbjct: 50 FSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILEN 109
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + S L LI+ PTRELA QI E + + + ++GG K +Q
Sbjct: 110 LYRKQWSDHDGLG----ALIISPTRELAIQIF-EVLRKIGRYHTFSAGLVIGGKSLKEEQ 164
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL ILV TPGR+L H++ + L+MLVLDEAD ++D+GF+K V+ I+
Sbjct: 165 ERLGR--MNILVCTPGRMLQHLDQTAFFET--YNLQMLVLDEADRIMDMGFQKTVDAIIG 220
Query: 561 CLPRRRQSLLFSATMPKELV-LKR----EHTYIDTVGLGSVETPVKVSKYNI 607
LP RQ+LLFSAT K++ L R + Y+ S TP K+ ++ +
Sbjct: 221 HLPPERQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYV 272
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 315 (115.9 bits), Expect = 4.9e-26, P = 4.9e-26
Identities = 71/200 (35%), Positives = 118/200 (59%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + G+S +KA+ GY + +Q + A + G+D + A+TGTGK+ F LP ++
Sbjct: 7 KFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQ 66
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + + + LIL PTRELA+QI+ E+I + + + + + GG +
Sbjct: 67 RLSSSKGNKVSS--NNVRALILTPTRELAAQIS-ESIEVYGKYLNLHSMVVFGGVKINPQ 123
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
RL +LVATPGRLLD + N+ +V+ L++ +LDEAD +LD+GF +D++ ++
Sbjct: 124 IARLRQG-VDVLVATPGRLLD-LYNQR--AVKFSQLEVFILDEADRMLDMGFIRDIKKLM 179
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP+ RQ+LLFSAT E+
Sbjct: 180 TALPKDRQNLLFSATFSPEI 199
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 300 (110.7 bits), Expect = 5.6e-26, P = 5.6e-26
Identities = 79/202 (39%), Positives = 114/202 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++P ++ G + T VQ + + L+G+D + AKTG+GK+ AF+LP ++
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ- 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
VL I+ L+L PTRELA QIA E +L G+ +VGG
Sbjct: 63 VLSEDPYG-------IFCLVLTPTRELAYQIA-EQFRVLGKPLGLKDCVVVGGLDMVAQA 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVEN 557
L P +++ATPGRL DH+ + + S++ LK LVLDEAD LL+ G F D+E
Sbjct: 115 LELSRKP-HVVIATPGRLADHLRSSNTFSLKK--LKFLVLDEADRLLEQGCADFTADLEV 171
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I++ +P RRQ+LLFSAT+ L
Sbjct: 172 ILEAVPARRQTLLFSATLTDTL 193
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 307 (113.1 bits), Expect = 5.7e-26, P = 5.7e-26
Identities = 85/233 (36%), Positives = 128/233 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ + ++ + GY++ + +QE + L G+D + +AK GTGK+ +FL+PA+E
Sbjct: 51 FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALE- 109
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ T+ V I VLIL PTRELA Q ++ L + + V+ GGT K D
Sbjct: 110 -----KTDPTKDV--IQVLILVPTRELALQ-TSQVCKELGKYMNVQVMASTGGTSLKDDI 161
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL + P ILVATPGR+LD + K+ L +++DEAD LL F+ VE +++
Sbjct: 162 MRLYN-PVHILVATPGRVLD-LAQKN--VANLSNCHTMIMDEADKLLSQEFQPLVEQLIN 217
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVE--TPVKVSKYNIYVFV 611
LP++RQ LLFSAT P + +EH + +E T V++Y Y FV
Sbjct: 218 FLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLKGVTQY--YAFV 268
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 309 (113.8 bits), Expect = 6.3e-26, P = 6.3e-26
Identities = 77/208 (37%), Positives = 124/208 (59%)
Query: 379 KRFDECG-ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPA 437
+ F + G I+PL +KA+ G+ T +Q+ + LEG + V +A TGTGK+ A+LLP
Sbjct: 2 EEFKKLGLITPL-LKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ + + + VLI+ PTRELA Q+A E +A L + + L + GG +
Sbjct: 61 LQRIQRGKKAQ---------VLIVTPTRELALQVADE-VAKLGKYLKVRALAVYGGQAIE 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
R L +++V TPGR+LDHI K+ + + K+++LDEAD +LD+GF D+E
Sbjct: 111 RQIRGLRQG-VEVIVGTPGRILDHIGRKTFPAAEI---KIVILDEADEMLDMGFIDDIEA 166
Query: 558 IVDCLPRRRQSLLFSATMPKEL--VLKR 583
I++ L R+Q+LLFSAT+P + ++K+
Sbjct: 167 ILNTLTNRQQTLLFSATLPAPIKTIIKK 194
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 309 (113.8 bits), Expect = 6.3e-26, P = 6.3e-26
Identities = 77/208 (37%), Positives = 124/208 (59%)
Query: 379 KRFDECG-ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPA 437
+ F + G I+PL +KA+ G+ T +Q+ + LEG + V +A TGTGK+ A+LLP
Sbjct: 2 EEFKKLGLITPL-LKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ + + + VLI+ PTRELA Q+A E +A L + + L + GG +
Sbjct: 61 LQRIQRGKKAQ---------VLIVTPTRELALQVADE-VAKLGKYLKVRALAVYGGQAIE 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
R L +++V TPGR+LDHI K+ + + K+++LDEAD +LD+GF D+E
Sbjct: 111 RQIRGLRQG-VEVIVGTPGRILDHIGRKTFPAAEI---KIVILDEADEMLDMGFIDDIEA 166
Query: 558 IVDCLPRRRQSLLFSATMPKEL--VLKR 583
I++ L R+Q+LLFSAT+P + ++K+
Sbjct: 167 ILNTLTNRQQTLLFSATLPAPIKTIIKK 194
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 321 (118.1 bits), Expect = 6.7e-26, P = 6.7e-26
Identities = 80/205 (39%), Positives = 123/205 (60%)
Query: 375 ILSQKRFDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
+ S + F E + P I + T MT VQ+ ++ LEG+DA+V+++TG+GK++A+
Sbjct: 99 VFSPEAFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 158
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
+P +++ L+A +S + P Y L+L PTRELA Q LLK I L+GG
Sbjct: 159 CIPVVQS-LQALTSKIQRSDGP-YALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 216
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ K ++ RL IL++TPGRL+DHI KS ++ ++ LV+DEAD +LDLGF K
Sbjct: 217 EKRKSEKARLRKG-INILISTPGRLVDHI--KSTKNIHFNRVRWLVVDEADRILDLGFEK 273
Query: 554 DVE---NIVDCLPRRRQSLLFSATM 575
DV N V+ ++RQ++L SAT+
Sbjct: 274 DVTVILNAVNAECQKRQNVLLSATL 298
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 308 (113.5 bits), Expect = 7.6e-26, Sum P(2) = 7.6e-26
Identities = 76/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + +L GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ S + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 432 RHIMDQRSLEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 487
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + SG L + +VLDEAD + D+GF V I
Sbjct: 488 QIAELKRG-AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 546
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 547 VDNVRPDRQTVMFSATFPRAM 567
Score = 64 (27.6 bits), Expect = 7.6e-26, Sum P(2) = 7.6e-26
Identities = 30/139 (21%), Positives = 57/139 (41%)
Query: 218 RRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKC 277
RR S +R+ R+ G +R + G+K K N ++E + + S+ KK
Sbjct: 82 RRRSRSRDRRRSRSRSRGRRSRSSS---PGSKTKK-TENRSRSKEKAEGGDSSKEKKKDK 137
Query: 278 FVGKRRFKRNXXXXXXXXXXXXXXXXXXKVEGWRDVKKMGSSASLGKYDMKITKRVPLK- 336
+ +++ +VE WR+ ++ + ++G+ +I + K
Sbjct: 138 DDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Query: 337 -SLEDEHDFEEQVELIRKE 354
SLED+ D E+ KE
Sbjct: 198 WSLEDDDDDEDDPAEAEKE 216
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 326 (119.8 bits), Expect = 7.7e-26, Sum P(2) = 7.7e-26
Identities = 82/227 (36%), Positives = 130/227 (57%)
Query: 375 ILSQKRFDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
+ + F E G+ P I + T MT VQ+ ++ LEG+DA+V+++TG+GK++A+
Sbjct: 97 VFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 156
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
+P +++ L+A S + P Y L+L PTRELA Q LLK I L+GG
Sbjct: 157 CIPVVQS-LQAMESKIQRSDGP-YALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 214
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ K ++ RL IL++TPGRL+DHI KS ++ L+ LV DEAD +LDLGF K
Sbjct: 215 EKRKSEKARLRKG-INILISTPGRLVDHI--KSTKNIHFSRLRWLVFDEADRILDLGFEK 271
Query: 554 DVE---NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVE 597
D+ N V+ ++RQ++L SAT+ + + + + D V + ++
Sbjct: 272 DITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLD 318
Score = 38 (18.4 bits), Expect = 7.7e-26, Sum P(2) = 7.7e-26
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 89 NQHKPMSPDEHVKALADRFMKE 110
N K SP +H + +DR +E
Sbjct: 45 NAQKMFSPKKHSVSTSDRNQEE 66
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 311 (114.5 bits), Expect = 9.0e-26, P = 9.0e-26
Identities = 74/197 (37%), Positives = 116/197 (58%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + G+ + + G+ + T++Q+ + A + G D + +KTG+GK++AF++PA++
Sbjct: 2 QFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ K + S P V+IL PTRELA Q+ ++ N VL L GG F
Sbjct: 62 RLSKNRALSKRD--PR--VVILTPTRELAKQVFSQLRLFTANTQYKAVLIL-GGENFNDQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ +P + +VATPGRL DH+ G L GL++L+LDEAD +LDLGF K++ I
Sbjct: 117 VKVLQKEP-EFIVATPGRLADHLTQ--G-HFHLNGLELLILDEADRMLDLGFSKELTQIN 172
Query: 560 DCLP-RRRQSLLFSATM 575
R+RQ+LLFSAT+
Sbjct: 173 KAADHRKRQTLLFSATL 189
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 311 (114.5 bits), Expect = 9.0e-26, P = 9.0e-26
Identities = 74/197 (37%), Positives = 116/197 (58%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + G+ + + G+ + T++Q+ + A + G D + +KTG+GK++AF++PA++
Sbjct: 2 QFSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ K + S P V+IL PTRELA Q+ ++ N VL L GG F
Sbjct: 62 RLSKNRALSKRD--PR--VVILTPTRELAKQVFSQLRLFTANTQYKAVLIL-GGENFNDQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ +P + +VATPGRL DH+ G L GL++L+LDEAD +LDLGF K++ I
Sbjct: 117 VKVLQKEP-EFIVATPGRLADHLTQ--G-HFHLNGLELLILDEADRMLDLGFSKELTQIN 172
Query: 560 DCLP-RRRQSLLFSATM 575
R+RQ+LLFSAT+
Sbjct: 173 KAADHRKRQTLLFSATL 189
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 298 (110.0 bits), Expect = 9.3e-26, P = 9.3e-26
Identities = 77/200 (38%), Positives = 111/200 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S K + GY T +Q T+ L+GKD V A+TG+GK+ FLLP E
Sbjct: 15 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
LK S+ T LIL PTRELA Q L K G+ ++GG R +
Sbjct: 75 -LKTHSAQTGARA-----LILSPTRELALQTLKFTKELGK-FTGLKTALILGGDRMEDQF 127
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +P I++ATPGRL+ H+ + +S++L ++ +V DEAD L ++GF + ++ I+
Sbjct: 128 AALHENP-DIIIATPGRLV-HVAVE--MSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIA 183
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q++LFSAT+PK LV
Sbjct: 184 RLPGGHQTVLFSATLPKLLV 203
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 311 (114.5 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 77/200 (38%), Positives = 115/200 (57%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S +F + G+ +K L + Q T +Q+ + + G+D + +KTG+GK++AF+LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ LK + S P LIL PTRELA Q+ E ++L L + GG F
Sbjct: 63 MLHKSLKTKAFSAKD--PR--GLILVPTRELAKQVYGELRSMLGGLSYTATL-ITGGENF 117
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ L P + +VATPGRL DH++++S + L GL+ LVLDEAD +LDLGF K++
Sbjct: 118 NDQVKALARGP-RFIVATPGRLADHLDHRS---LFLEGLETLVLDEADRMLDLGFAKELR 173
Query: 557 NIVDCLP-RRRQSLLFSATM 575
I + RRRQ+L+FSAT+
Sbjct: 174 RIHNAAKHRRRQTLMFSATL 193
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 311 (114.5 bits), Expect = 1.0e-25, P = 1.0e-25
Identities = 77/200 (38%), Positives = 115/200 (57%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S +F + G+ +K L + Q T +Q+ + + G+D + +KTG+GK++AF+LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ LK + S P LIL PTRELA Q+ E ++L L + GG F
Sbjct: 63 MLHKSLKTKAFSAKD--PR--GLILVPTRELAKQVYGELRSMLGGLSYTATL-ITGGENF 117
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ L P + +VATPGRL DH++++S + L GL+ LVLDEAD +LDLGF K++
Sbjct: 118 NDQVKALARGP-RFIVATPGRLADHLDHRS---LFLEGLETLVLDEADRMLDLGFAKELR 173
Query: 557 NIVDCLP-RRRQSLLFSATM 575
I + RRRQ+L+FSAT+
Sbjct: 174 RIHNAAKHRRRQTLMFSATL 193
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 312 (114.9 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 78/197 (39%), Positives = 114/197 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G++ + +LT AGY T +QE + ++G+D V A+TGTGK++AF P ++
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + S + V VL+L PTRELA QIA + + V+ + GG +
Sbjct: 69 LSRNASPAP---VRGTRVLVLAPTRELAGQIAT-SFGTYGAGLNLRVVMVCGGAKIGGQI 124
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE ILVATPGRL+D +E ++ V L ++ L+LDEAD +LDLGF + I
Sbjct: 125 RQLERG-AHILVATPGRLIDLMEQRA---VSLDKVETLILDEADQMLDLGFIHALRAIAK 180
Query: 561 CLPRRRQSLLFSATMPK 577
+P +RQ+L FSATMPK
Sbjct: 181 NVPSKRQTLFFSATMPK 197
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 320 (117.7 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 77/199 (38%), Positives = 112/199 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA+TA G+ Q T +Q+A + L GKD A TGTGK+ AF+LP +E
Sbjct: 182 FQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLER 241
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ + P VL+L PTREL Q+ + L + VGG K +
Sbjct: 242 LIYKPRQA-----PITRVLVLVPTRELGIQVHS-VTKQLAQFSSVTTCLAVGGLDVKTQE 295
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P IL+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 296 AALRSGP-DILIATPGRLIDHLHNCP--SFHLSSVEVLILDEADRMLDEYFEEQMKEIIR 352
Query: 561 CLPRRRQSLLFSATMPKEL 579
R RQ++LFSATM +E+
Sbjct: 353 LCSRHRQTMLFSATMTEEV 371
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 326 (119.8 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 82/227 (36%), Positives = 130/227 (57%)
Query: 375 ILSQKRFDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
+ + F E G+ P I + T MT VQ+ ++ LEG+DA+V+++TG+GK++A+
Sbjct: 226 VFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 285
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
+P +++ L+A S + P Y L+L PTRELA Q LLK I L+GG
Sbjct: 286 CIPVVQS-LQAMESKIQRSDGP-YALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 343
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ K ++ RL IL++TPGRL+DHI KS ++ L+ LV DEAD +LDLGF K
Sbjct: 344 EKRKSEKARLRKG-INILISTPGRLVDHI--KSTKNIHFSRLRWLVFDEADRILDLGFEK 400
Query: 554 DVE---NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVE 597
D+ N V+ ++RQ++L SAT+ + + + + D V + ++
Sbjct: 401 DITVILNAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLD 447
Score = 38 (18.4 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 89 NQHKPMSPDEHVKALADRFMKE 110
N K SP +H + +DR +E
Sbjct: 174 NAQKMFSPKKHSVSTSDRNQEE 195
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 308 (113.5 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 74/200 (37%), Positives = 119/200 (59%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E + ++AL G+ + T +Q A + L+G+D + A TGTGK+ A+LLPA++
Sbjct: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + PP +LIL PTRELA Q++ A L K H + + T+ GG + ++
Sbjct: 66 LLDFPRKKSG---PP-RILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAY-MNH 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ S+ I+VAT GRLL +I+ ++ R ++ L+LDEAD +LD+GF +D+E+I
Sbjct: 120 AEVFSENQDIVVATTGRLLQYIKEEN-FDCR--AVETLILDEADRMLDMGFAQDIEHIAG 176
Query: 561 CLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ + +
Sbjct: 177 ETRWRKQTLLFSATLEGDAI 196
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 314 (115.6 bits), Expect = 2.1e-25, P = 2.1e-25
Identities = 79/198 (39%), Positives = 114/198 (57%)
Query: 380 RFDECGISPLT---IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
RF E PL+ I+AL +G+ T VQ T+ KD VV A TG+GK++AFLLP
Sbjct: 15 RFSELK-PPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLP 73
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
IE + + S+S + +I+ PTREL++QI A + + + LVGG
Sbjct: 74 FIEIIRR--SNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREV 131
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ D LE + +L+ TPGRL D ++ L R L++L+LDEAD LLD+GF+K V
Sbjct: 132 EADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFR--NLEILILDEADRLLDMGFQKQVN 189
Query: 557 NIVDCLPRRRQSLLFSAT 574
I+ LP++R++ LFSAT
Sbjct: 190 YIISRLPKQRRTGLFSAT 207
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 310 (114.2 bits), Expect = 2.7e-25, P = 2.7e-25
Identities = 85/215 (39%), Positives = 122/215 (56%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S+K F +S +ALT GY T VQ + L+ KD VVK++TG+GK+ +F +
Sbjct: 1 MSKKSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P E V + Q L+L PTRELA Q+ E I + I + G +
Sbjct: 61 PLCEMV--EWEENKPQ------ALVLTPTRELAVQVK-EDITNIGRFKRIKAAAIYGKSP 111
Query: 496 FKVDQRRLE-SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F +++LE I+V TPGR+LDHIE K LS L LK LV+DEAD +L++GF
Sbjct: 112 FA--RQKLELKQKTHIVVGTPGRVLDHIE-KGTLS--LERLKYLVIDEADEMLNMGFIDQ 166
Query: 555 VENIVDCLPRRRQSLLFSATMPKELVLKREHTYID 589
VE I+D LP +R ++LFSAT+P++ V + TY++
Sbjct: 167 VEAIIDELPTKRMTMLFSATLPED-VERLSRTYMN 200
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 310 (114.2 bits), Expect = 2.7e-25, P = 2.7e-25
Identities = 85/215 (39%), Positives = 122/215 (56%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S+K F +S +ALT GY T VQ + L+ KD VVK++TG+GK+ +F +
Sbjct: 1 MSKKSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P E V + Q L+L PTRELA Q+ E I + I + G +
Sbjct: 61 PLCEMV--EWEENKPQ------ALVLTPTRELAVQVK-EDITNIGRFKRIKAAAIYGKSP 111
Query: 496 FKVDQRRLE-SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F +++LE I+V TPGR+LDHIE K LS L LK LV+DEAD +L++GF
Sbjct: 112 FA--RQKLELKQKTHIVVGTPGRVLDHIE-KGTLS--LERLKYLVIDEADEMLNMGFIDQ 166
Query: 555 VENIVDCLPRRRQSLLFSATMPKELVLKREHTYID 589
VE I+D LP +R ++LFSAT+P++ V + TY++
Sbjct: 167 VEAIIDELPTKRMTMLFSATLPED-VERLSRTYMN 200
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 308 (113.5 bits), Expect = 2.8e-25, P = 2.8e-25
Identities = 92/261 (35%), Positives = 133/261 (50%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ +KA G+ +++Q L LEGKD + A+TG+GK+ AF +P +
Sbjct: 9 KTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
Query: 439 EAVLKATSSSTTQLV----PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+A+L+ S + P + +L PTRELA QIA E L + LVGG
Sbjct: 69 QALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA-EQFEALGADISLRCAVLVGGI 127
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
L P ++VATPGRL DH+ + G S++ LK LVLDEAD LL+ F K
Sbjct: 128 DRMQQTIALGKRP-HVIVATPGRLWDHMSDTKGFSLK--SLKYLVLDEADRLLNEDFEKS 184
Query: 555 VENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVL 614
+ I++ +P R++ LFSATM K+ V K + + PVK+ + Y V L
Sbjct: 185 LNQILEEIPLERKTFLFSATMTKK-VRKLQRACL--------RNPVKIEAASKYSTVDTL 235
Query: 615 SIK---IQAFYIICF-VYTIS 631
+ + A Y C+ VY +S
Sbjct: 236 KQQYRFVAAKYKDCYLVYILS 256
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 310 (114.2 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 74/196 (37%), Positives = 114/196 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA+ G+ + T +Q T+ L KD + +A+TGTGK+ AF +P +E
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE- 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
K S P I +++ PTRELA Q++ E + ++ VL + GG
Sbjct: 64 --KINPES-----PNIQAIVIAPTRELAIQVSEELYKIGQDKRA-KVLPIYGGQDIGRQI 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ +P I+V TPGRLLDHI ++ +RL + +V+DEAD +L++GF D+E+I+
Sbjct: 116 RALKKNP-NIIVGTPGRLLDHINRRT---IRLNNVNTVVMDEADEMLNMGFIDDIESILS 171
Query: 561 CLPRRRQSLLFSATMP 576
+P Q+LLFSATMP
Sbjct: 172 NVPSEHQTLLFSATMP 187
>ASPGD|ASPL0000054998 [details] [associations]
symbol:AN0894 species:162425 "Emericella nidulans"
[GO:0000373 "Group II intron splicing" evidence=IEA] [GO:0034337
"RNA folding" evidence=IEA] [GO:0000372 "Group I intron splicing"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EnsemblFungi:CADANIAT00001763
HOGENOM:HOG000204197 OMA:DDEVPTH Uniprot:C8VUS9
Length = 641
Score = 314 (115.6 bits), Expect = 3.5e-25, P = 3.5e-25
Identities = 92/245 (37%), Positives = 135/245 (55%)
Query: 380 RFDECG---ISPLT-IKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
RF E G I P ++ LT ++ MT VQ T+ ++G D + +AKTGTGK++AFL
Sbjct: 78 RFAELGERNILPRNLVENLTKHMKLETMTEVQRRTILESVKGGDMLAQAKTGTGKTVAFL 137
Query: 435 LPAIE------AVLKATSSSTTQLVP-PIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487
+P +E ++LK + + ++ P I +++ PTRELA QIA EA L+ G+ V
Sbjct: 138 IPVVEKLLGDRSLLKTSYRNGRKIAPIDIRAIVISPTRELAEQIAVEAKRLVAR-TGLQV 196
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
VGGT + +L+ + C ILVATPGRL D + + + VR L VLDEAD LL
Sbjct: 197 QVAVGGTMKRAALHQLQREGCHILVATPGRLKDLLTDPTS-GVRAPKLNTFVLDEADRLL 255
Query: 548 DLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREHTYIDTVGLGSVE 597
D GF ++ I LP RQ+L+FSAT+ E++ +KR+ ++ V V
Sbjct: 256 DEGFAPELMEIQHRLPDPAEVDRQTLMFSATVAPEVMGMVRSTMKRDFRFVKCVRDDEVP 315
Query: 598 TPVKV 602
T + V
Sbjct: 316 THMSV 320
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 306 (112.8 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 82/206 (39%), Positives = 124/206 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++ KAL TRVQ+ + A L G+D + ++TG+GK+ AF LP ++
Sbjct: 19 FAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 441 VLKATSSSTT-QLVP---PIYVLILCPTRELASQI--AAEAIAL-LKNHDGIGVLTLVGG 493
+ + + TT + VP P+ L+L PTRELA Q+ A A+A L + + L GG
Sbjct: 78 LWQQIAVQTTAKSVPAAKPL-ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ L + P Q++VATPGRLLD + +S +S L +K LVLDEAD LL++GF
Sbjct: 137 VALEQQLADLSAKP-QLVVATPGRLLD-LCTQSHIS--LDAIKHLVLDEADRLLEMGFWP 192
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
D++ ++ +P+R+Q+LLFSAT+P+ L
Sbjct: 193 DMQKLMAMMPKRKQTLLFSATLPEAL 218
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 306 (112.8 bits), Expect = 3.9e-25, P = 3.9e-25
Identities = 82/206 (39%), Positives = 124/206 (60%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++ KAL TRVQ+ + A L G+D + ++TG+GK+ AF LP ++
Sbjct: 19 FAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 441 VLKATSSSTT-QLVP---PIYVLILCPTRELASQI--AAEAIAL-LKNHDGIGVLTLVGG 493
+ + + TT + VP P+ L+L PTRELA Q+ A A+A L + + L GG
Sbjct: 78 LWQQIAVQTTAKSVPAAKPL-ALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGG 136
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ L + P Q++VATPGRLLD + +S +S L +K LVLDEAD LL++GF
Sbjct: 137 VALEQQLADLSAKP-QLVVATPGRLLD-LCTQSHIS--LDAIKHLVLDEADRLLEMGFWP 192
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
D++ ++ +P+R+Q+LLFSAT+P+ L
Sbjct: 193 DMQKLMAMMPKRKQTLLFSATLPEAL 218
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 307 (113.1 bits), Expect = 5.5e-25, P = 5.5e-25
Identities = 72/199 (36%), Positives = 115/199 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ +KA+T GY T +Q + + L GK+ + A+TGTGK+ +F+LP +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
A + + +IL PTRELA Q+ + I + + + + GG +
Sbjct: 63 FADAPKIRPKR----VRSIILTPTRELALQVE-QNINQYAKYLPLTAMAMYGGVDAAPQK 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+RL + +LVATPGRLLD ++ +R + +LVLDEAD +LD+GF +D+ NI++
Sbjct: 118 KRL-IEGVDLLVATPGRLLDMYTQRA---IRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT+ K++
Sbjct: 174 KLPEQRQNLLFSATLSKQV 192
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 307 (113.1 bits), Expect = 5.5e-25, P = 5.5e-25
Identities = 72/199 (36%), Positives = 115/199 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ +KA+T GY T +Q + + L GK+ + A+TGTGK+ +F+LP +
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
A + + +IL PTRELA Q+ + I + + + + GG +
Sbjct: 63 FADAPKIRPKR----VRSIILTPTRELALQVE-QNINQYAKYLPLTAMAMYGGVDAAPQK 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+RL + +LVATPGRLLD ++ +R + +LVLDEAD +LD+GF +D+ NI++
Sbjct: 118 KRL-IEGVDLLVATPGRLLDMYTQRA---IRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT+ K++
Sbjct: 174 KLPEQRQNLLFSATLSKQV 192
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 315 (115.9 bits), Expect = 5.6e-25, P = 5.6e-25
Identities = 75/200 (37%), Positives = 115/200 (57%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + +S T+K L A Y Q T +Q T+ L+G+D + AKTG+GK++AFL+P +E
Sbjct: 71 KFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLE 130
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + ++ L LI+ PTRELA Q + KNH+ L ++GG K +
Sbjct: 131 CLYREQWTAMDGLG----ALIISPTRELAYQTFEVLRKVGKNHEFSAGL-VIGGKDLKDE 185
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++ I++ TPGRLL H++ + + L MLVLDEAD +LD+GF + IV
Sbjct: 186 SEKIHRT--NIIICTPGRLLQHMDETA--TFHASDLHMLVLDEADRILDMGFADTLNAIV 241
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP+ RQ+LLFSAT + +
Sbjct: 242 ENLPKSRQTLLFSATQTRSV 261
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 311 (114.5 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 75/202 (37%), Positives = 118/202 (58%)
Query: 376 LSQKRFDECGISPLT---IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
L++ RF + PL+ I+AL + + T VQ AT+ KD V A TG+GK++A
Sbjct: 11 LTETRFSDLE-PPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLA 69
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
F++P +E + ++TS + +I+ PTREL++QI A + + + LVG
Sbjct: 70 FVVPLVEILRRSTSFPPKP--HQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVG 127
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G K D + +E + C +L+ TPGRL D +E L R L++L+LDEAD LL++GF+
Sbjct: 128 GREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFR--NLEILILDEADRLLEMGFQ 185
Query: 553 KDVENIVDCLPRRRQSLLFSAT 574
+ V I+ LP++R++ LFSAT
Sbjct: 186 RQVNYIISRLPKQRRTGLFSAT 207
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 306 (112.8 bits), Expect = 6.1e-25, P = 6.1e-25
Identities = 72/201 (35%), Positives = 109/201 (54%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ +A G+ T +Q+ + L +D + A+TG+GK+ AF LP I
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ + S P + ++L PTRELA QI+ E + G+ + +VGG
Sbjct: 106 QELWNNPS--------PFFAVVLAPTRELAYQIS-EQFEAIGGSIGVRSVVIVGGMDMVT 156
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L P +LV TPGRL+DH+EN G S++ LK L++DEAD LLD+ F ++ I
Sbjct: 157 QAVALSKKP-HVLVCTPGRLMDHLENTKGFSLK--NLKYLIMDEADRLLDMDFGPIIDKI 213
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ +P R++LLFSATM ++
Sbjct: 214 LKIIPHERRTLLFSATMTSKV 234
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 310 (114.2 bits), Expect = 6.3e-25, P = 6.3e-25
Identities = 91/265 (34%), Positives = 132/265 (49%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P S F + I P ++A+ GY T +Q AT+ A + G D V A+TGTGK+ AF
Sbjct: 8 PAASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAF 67
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVG 492
+P + + T VP L+L PTRELA Q+A EA + + VL + G
Sbjct: 68 AIPMLSKI------DITSKVPQ--ALVLVPTRELALQVA-EAFGRYGAYLSQLNVLPIYG 118
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G+ + V L Q++V TPGR++DH+E + + L + LVLDEAD +L +GF
Sbjct: 119 GSSYAVQLAGLRRG-AQVVVGTPGRMIDHLERAT---LDLSRVDFLVLDEADEMLTMGFA 174
Query: 553 KDVENIVDCLPRRRQSLLFSATMP---KELVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
DVE I+ P +Q LFSATMP ++L K H + +S+ I V
Sbjct: 175 DDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV 234
Query: 610 F----VLVLSIKIQAFY-IICFVYT 629
L ++++ F +I FV T
Sbjct: 235 ARKMDALTRVLEVEPFEAMIVFVRT 259
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 313 (115.2 bits), Expect = 6.4e-25, P = 6.4e-25
Identities = 75/200 (37%), Positives = 117/200 (58%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF++ +S T++ L Y + T +Q T++ L G D V AKTG+GK++A ++P +E
Sbjct: 77 RFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLE 136
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ +A S L LI+ PTRELA Q + I + H G ++GG+ +
Sbjct: 137 ALWRAKWSPDYGLG----ALIISPTRELALQTFS-TINAVGAHHGFSCGLVIGGSDVAFE 191
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ R+ I+V TPGRLL H++ + +S L++LVLDEAD +LD+GF K + +I+
Sbjct: 192 RNRISG--INIIVCTPGRLLQHMDENAQMSCD--SLQVLVLDEADRMLDMGFSKQLNSII 247
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP RQ+LLFSAT + +
Sbjct: 248 NNLPAERQTLLFSATQTRNV 267
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 313 (115.2 bits), Expect = 6.9e-25, P = 6.9e-25
Identities = 84/207 (40%), Positives = 116/207 (56%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F++CG S + A+ Y + T +Q L L G+D + AKTG+GK+ AF+LP I
Sbjct: 228 KTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 287
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ + PI V I PTRELA QI EA K + G+ V + GG
Sbjct: 288 VHIMDQPELQRDE--GPIGV-ICAPTRELAHQIFLEAKKFSKAY-GLRVSAVYGGMSKHE 343
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L++ C+I+VATPGRL+D ++ K+ + +M LVLDEAD + DLGF V +I
Sbjct: 344 QFKELKAG-CEIVVATPGRLIDMLKMKA---LTMMRASYLVLDEADRMFDLGFEPQVRSI 399
Query: 559 VDCLPRRRQSLLFSATMP-KELVLKRE 584
V + RQ+LLFSATMP K L RE
Sbjct: 400 VGQIRPDRQTLLFSATMPWKVEKLARE 426
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 311 (114.5 bits), Expect = 8.3e-25, P = 8.3e-25
Identities = 85/230 (36%), Positives = 124/230 (53%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + ++ + ALT G++ T +Q A + LEG+DA+ KA+TGTGK+ AF LP +
Sbjct: 27 QFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLN 86
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + +Q P +++ PTRELA Q+AAE L +N G+ VL + GG +D
Sbjct: 87 KL------NLSQYKPQ--AIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI-LD 137
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q R I+V TPGR+ D I + L +LDEAD +L +GF DV I+
Sbjct: 138 QMRALKSGAHIVVGTPGRVKDLITRDR---LHLDECHTFILDEADEMLKMGFVDDVTWIM 194
Query: 560 DCLPRRRQSLLFSATMP---KELVLK--REHTYIDTVGLGSVETPVKVSK 604
+ P Q +LFSATMP KE+V + R +D G S +T KV +
Sbjct: 195 EQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG--SNQTVAKVEQ 242
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 311 (114.5 bits), Expect = 8.3e-25, P = 8.3e-25
Identities = 85/230 (36%), Positives = 124/230 (53%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + ++ + ALT G++ T +Q A + LEG+DA+ KA+TGTGK+ AF LP +
Sbjct: 27 QFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLN 86
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + +Q P +++ PTRELA Q+AAE L +N G+ VL + GG +D
Sbjct: 87 KL------NLSQYKPQ--AIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASI-LD 137
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q R I+V TPGR+ D I + L +LDEAD +L +GF DV I+
Sbjct: 138 QMRALKSGAHIVVGTPGRVKDLITRDR---LHLDECHTFILDEADEMLKMGFVDDVTWIM 194
Query: 560 DCLPRRRQSLLFSATMP---KELVLK--REHTYIDTVGLGSVETPVKVSK 604
+ P Q +LFSATMP KE+V + R +D G S +T KV +
Sbjct: 195 EQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAG--SNQTVAKVEQ 242
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 312 (114.9 bits), Expect = 8.4e-25, P = 8.4e-25
Identities = 82/233 (35%), Positives = 130/233 (55%)
Query: 375 ILSQKRFDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
+ + F + P I + T MT VQ+ ++ LEG+DA+V+++TG+GK++A+
Sbjct: 128 VFTSDAFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAY 187
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
+P +++ L+A S + P Y LIL PTRELA Q LLK I L+GG
Sbjct: 188 CIPVVQS-LQAMQSKIQRGDGP-YALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 245
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ K ++ RL IL++TPGRL+DHI KS ++ ++ L+LDEAD +LDLGF K
Sbjct: 246 EKRKSEKARLRKG-INILISTPGRLVDHI--KSTKNIHFRQIRWLILDEADRILDLGFEK 302
Query: 554 DVE---NIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVS 603
D+ N V+ + RQ++L SAT+ + + + + D V + ++ VS
Sbjct: 303 DLTVILNAVNAECQERQNVLLSATLTEGVARLADISLHDPVSISVLDESHDVS 355
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 306 (112.8 bits), Expect = 8.8e-25, P = 8.8e-25
Identities = 76/190 (40%), Positives = 113/190 (59%)
Query: 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS 446
S LT KA+ G+ + T +Q T+ L KD + +A+TGTGK+ AF +P +E K
Sbjct: 12 SDLT-KAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE---KINP 67
Query: 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESD 506
S P I +++ PTRELA Q++ E + ++ VL + GG R L+ +
Sbjct: 68 ES-----PNIQAIVIAPTRELAIQVSEELYKIGQDKRA-RVLPIYGGQDIGRQIRALKKN 121
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
P I+V TPGRLLDHI ++ +RL + +VLDEAD +L++GF +D+E+I+ +P
Sbjct: 122 P-HIIVGTPGRLLDHINRRT---MRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH 177
Query: 567 QSLLFSATMP 576
Q+LLFSATMP
Sbjct: 178 QTLLFSATMP 187
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 307 (113.1 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 80/223 (35%), Positives = 122/223 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S KA++ GY + +Q + A L GKD + A+TGTGK+ F LP +E
Sbjct: 3 FSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + Q L+L PTRELA+Q+ E++ + + + GG
Sbjct: 63 LAKGHKAKSGQT----RALVLTPTRELAAQVG-ESVETYGKYLPLRSAVVFGGVPINPQI 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +LVATPGRLLD ++ + V+ L++LVLDEAD +LD+GF +D++ I+
Sbjct: 118 NKLRHG-VDVLVATPGRLLDLVQQNA---VKFNQLEILVLDEADRMLDMGFIRDIKKILA 173
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVS 603
LP +RQ+L+FSAT E+ RE + G V PV++S
Sbjct: 174 LLPAKRQNLMFSATFSDEI---RE------LAKGLVNHPVEIS 207
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 305 (112.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 75/201 (37%), Positives = 111/201 (55%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + AL GY + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 371 KTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMF 430
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ + + PI V I+ PTRELA QI E K G+ V+ + GGT
Sbjct: 431 RHIMDQRALEEGE--GPIAV-IMTPTRELALQITKECKKFSKTL-GLRVVCVYGGTGISE 486
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + +G L + +VLDEAD + D+GF V I
Sbjct: 487 QIAELKRG-AEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI 545
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 546 VDNVRPDRQTVMFSATFPRAM 566
Score = 56 (24.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 306 KVEGWRDVKKMGSSASLGKYDMKITKRVPLK--SLEDEHDFEEQVELIRKE 354
+VE WR+ ++ + ++G+ +I + K SLED+ D +E+ KE
Sbjct: 165 RVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKE 215
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 311 (114.5 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 77/200 (38%), Positives = 112/200 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT-GKSIAFLLPAIE 439
F + +S +KA+TA G+ Q T +Q+A + L GKD A TGT GK+ AF+LP +E
Sbjct: 182 FQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVLE 241
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ + P VL+L PTREL Q+ + L + VGG K
Sbjct: 242 RLIYKPRQA-----PITRVLVLVPTRELGIQVHS-VTKQLAQFSSVTTCLAVGGLDVKTQ 295
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L S P IL+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 296 EAALRSGP-DILIATPGRLIDHLHNCP--SFHLSSVEVLILDEADRMLDEYFEEQMKEII 352
Query: 560 DCLPRRRQSLLFSATMPKEL 579
R RQ++LFSATM +E+
Sbjct: 353 RLCSRHRQTMLFSATMTEEV 372
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 309 (113.8 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 80/201 (39%), Positives = 115/201 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S ++A+ AAGY Q T VQ+ + A L+G+D +V A+TGTGK+ F LP +E
Sbjct: 3 FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 441 VLKATSSSTTQLVPPIY--VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ +Q P VL+L PTRELA+Q+ E+ L + GG
Sbjct: 63 LFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVH-ESFKLYARDLKFVSACIFGGVGMN- 120
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
Q + S +LVA PGRLLD + + SV L +++LVLDEAD +LD+GF DV+ +
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLD-LAGQG--SVDLSHVEILVLDEADRMLDMGFVHDVKKV 177
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ LP +RQ+LLFSAT ++
Sbjct: 178 LARLPAKRQNLLFSATFSNDI 198
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 298 (110.0 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 73/199 (36%), Positives = 108/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ + L+ G T +Q+ + L+GKD + A+TGTGK+ AF LP I+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ I L+L PTRELA Q+ A K + + ++ + GGT KV
Sbjct: 68 FIEQPWQREANS-KEIRALVLVPTRELAQQVLDSLQAYAKGTE-LKIVAVYGGTSMKVQL 125
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L IL+ATPGRLLDH KS + L +++LVLDEAD +LD+GF D++ ++
Sbjct: 126 NHLRGG-VDILIATPGRLLDHAHVKS---LFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181
Query: 561 CLPRRRQSLLFSATMPKEL 579
L RQ+L FSAT ++
Sbjct: 182 RLSPLRQTLFFSATFDSKI 200
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 298 (110.0 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 73/199 (36%), Positives = 108/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ + L+ G T +Q+ + L+GKD + A+TGTGK+ AF LP I+
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ I L+L PTRELA Q+ A K + + ++ + GGT KV
Sbjct: 68 FIEQPWQREANS-KEIRALVLVPTRELAQQVLDSLQAYAKGTE-LKIVAVYGGTSMKVQL 125
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L IL+ATPGRLLDH KS + L +++LVLDEAD +LD+GF D++ ++
Sbjct: 126 NHLRGG-VDILIATPGRLLDHAHVKS---LFLGKVEVLVLDEADRMLDMGFMPDLQRVLR 181
Query: 561 CLPRRRQSLLFSATMPKEL 579
L RQ+L FSAT ++
Sbjct: 182 RLSPLRQTLFFSATFDSKI 200
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 305 (112.4 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 82/272 (30%), Positives = 138/272 (50%)
Query: 314 KKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIR----KEISXXXXXXXXXXXXX 369
KK+ S +L Y K+ +++ ++L+ + ++Q E + S
Sbjct: 53 KKVKSLKNLD-YTKKLAEKIKQQALQKQQKQQKQQEQENANHNQTESSLSSSSSTTSSSI 111
Query: 370 XXXXPI--LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT 427
P L K F E + P ++++ + + + T +Q + LEGKD + A+TG+
Sbjct: 112 TTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGS 171
Query: 428 GKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487
GK+ AF +P ++++ A P + L+L PTREL QI + L + G+
Sbjct: 172 GKTAAFAIPILQSLWHAQQ--------PYFALVLAPTRELTFQIK-DTFDALGSSMGLRS 222
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+VGG R L P ++VATPGR++DH+E+ G S++ LK LV+DEAD LL
Sbjct: 223 SCIVGGMDMMDQARDLMRKP-HVIVATPGRIMDHLEHTKGFSLK--NLKYLVMDEADRLL 279
Query: 548 DLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
D+ F ++ I+ +P +R + LFSATM ++
Sbjct: 280 DMDFGPALDKILKVIPIKRTTYLFSATMTNKI 311
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 297 (109.6 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 75/205 (36%), Positives = 119/205 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 291 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAH 350
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ T+S +L P +I+ PTREL +QI EA + + + GGT+
Sbjct: 351 MMHDGITASRFKELQEP-ECIIVAPTRELINQIYLEA-RKFSFGTCVRAVVIYGGTQLGY 408
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I K + +R + K LVLDEAD +LD+GF +++ +
Sbjct: 409 SIRQIVQG-CNILCATPGRLMDII-GKEKIGLRQV--KYLVLDEADRMLDMGFGPEMKKL 464
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+L+FSAT P+E+
Sbjct: 465 ISCPGMPSKEQRQTLMFSATFPEEI 489
Score = 57 (25.1 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 49/197 (24%), Positives = 70/197 (35%)
Query: 83 DPDSETNQHKPMSPDEHVKALA-DRFMKEGAEDLWNE--------DDGPVKSEQRPRSGA 133
D D E KP P +V DR+ D +N +DGP + + R G
Sbjct: 3 DEDWEAEIIKPHMPS-YVPVFEKDRYSSGANGDTFNRTTASSSEMNDGPSRRDHFMRGGF 61
Query: 134 EANQRPRLAGAPIDLRGL-ISDKRXXXXXXXXXXXXXXXKTRNYSVLSESKFSDRSKSAS 192
L+G + R S+KR R +S +KF + S+
Sbjct: 62 -------LSGRSMGNRDAGESNKRENTSTMGGFGVGKSFGNRGFS----NKFEE-GDSSG 109
Query: 193 LIFMPNLECNDGETVIPSRNVMDFVRRAYFS-GTDKR--NFCRNDG-SSTRD-KAGFDTG 247
N +C D +T RN F +R F G D R G S R + GF G
Sbjct: 110 FWRESNNDCEDNQT----RN-RGFSKRGGFQDGNDSEASGSSRRGGRGSFRGCRGGFGLG 164
Query: 248 NKAKPFARNLGNNRENG 264
N + + ++ G R G
Sbjct: 165 NPNREYEQDEGTQRTGG 181
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 308 (113.5 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 81/199 (40%), Positives = 112/199 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + V VLIL PTRELA QI + I L I +VGG + +
Sbjct: 229 LL-----FRPKRVFATRVLILTPTRELAVQIHS-MIQNLAQFTDIKCGLIVGGLSVREQE 282
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N +SV L L +L+LDEAD LL GF ++ +V
Sbjct: 283 VVLRSMP-DIVVATPGRMIDHLRNS--MSVDLDDLAVLILDEADRLLQTGFATEITELVR 339
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+RRQ++LFSATM +E+
Sbjct: 340 LCPKRRQTMLFSATMTEEV 358
Score = 46 (21.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 85 DSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQRPRSGAEANQRP 139
DS K +EH +A D ++G E+ EDD + +++ + A+A Q P
Sbjct: 23 DSSEEDVKEGEAEEH-EAGED---EDGEEEYEEEDDDEEEEDEKRKRDADA-QSP 72
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 304 (112.1 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 69/169 (40%), Positives = 104/169 (61%)
Query: 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462
T +QEA+++ L+G DA+VKA+TG+GK++++L+P ++ K T T+ Y +I+
Sbjct: 232 THIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQ---KLTEQRVTRS-DGCYCVIIT 287
Query: 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI 522
PTREL+SQI E LLK I ++GG ++ R+ ILVATPGRLLDH+
Sbjct: 288 PTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKG-INILVATPGRLLDHL 346
Query: 523 ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571
+N +K +LDEAD LLDLGF KDV I++ L +++++ F
Sbjct: 347 QNTQSFPTD--NIKWCILDEADKLLDLGFEKDVTTIINLLDSKKRTMKF 393
Score = 52 (23.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 219 RAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEF 272
RAY T+K N+ + +K + N K + N NN N ++ N + F
Sbjct: 47 RAYREKTNK-----NENNLNNNKNNNNNNNNNKTYNNNNSNNSYNNNNYNNNSF 95
Score = 50 (22.7 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 208 IPSRNVMDFVRR-AYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDS 266
+P + + AYF K N N+ + T ++A + NK + NL NN+ N ++
Sbjct: 18 VPKKEINSKAEEEAYF----KENISNNN-NFTNNRAYREKTNKNE---NNLNNNKNNNNN 69
Query: 267 KN 268
N
Sbjct: 70 NN 71
Score = 43 (20.2 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 10/61 (16%), Positives = 27/61 (44%)
Query: 223 SGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNRENGDSK-NMSEFMKKKCFVGK 281
+ + + + N+ +++ + ++ + N NN N ++ N + KK F+ K
Sbjct: 69 NNNNNKTYNNNNSNNSYNNNNYNNNSFNNNNNNNYNNNNSNNNNNSNNNNLNKKPTFLEK 128
Query: 282 R 282
+
Sbjct: 129 K 129
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 300 (110.7 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 75/210 (35%), Positives = 113/210 (53%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD G+S + A+T GY Q+T+VQ+ + L GKD + A+TGTGK+ AF LP +E
Sbjct: 2 KFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + P + L++ PTRELA Q+ A I + L + GG
Sbjct: 62 QLAAKPADK-----PLLRALVMTPTRELAIQVCAN-IQKYSQFLPLKTLAVYGGANMNPQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++ +E ILVATPGRL D I ++ L + LV+DEAD +LDLGF +D+E +
Sbjct: 116 RKGVEQG-VDILVATPGRLFDIIGQ---FNLDLSSVTTLVIDEADRMLDLGFVRDIEKVK 171
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYID 589
+ Q++LFSAT + V + H ++
Sbjct: 172 RLIAPVHQTMLFSATY-SDAVKQLSHKMLN 200
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 300 (110.7 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 75/210 (35%), Positives = 113/210 (53%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD G+S + A+T GY Q+T+VQ+ + L GKD + A+TGTGK+ AF LP +E
Sbjct: 2 KFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + P + L++ PTRELA Q+ A I + L + GG
Sbjct: 62 QLAAKPADK-----PLLRALVMTPTRELAIQVCAN-IQKYSQFLPLKTLAVYGGANMNPQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++ +E ILVATPGRL D I ++ L + LV+DEAD +LDLGF +D+E +
Sbjct: 116 RKGVEQG-VDILVATPGRLFDIIGQ---FNLDLSSVTTLVIDEADRMLDLGFVRDIEKVK 171
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYID 589
+ Q++LFSAT + V + H ++
Sbjct: 172 RLIAPVHQTMLFSATY-SDAVKQLSHKMLN 200
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 305 (112.4 bits), Expect = 2.8e-24, P = 2.8e-24
Identities = 82/228 (35%), Positives = 123/228 (53%)
Query: 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT 450
++ L G+ MT VQ A + + KD +A TG+GK++AF++PA+E +LK
Sbjct: 21 LQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKK 80
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
V LI+ PTRELA QI+ L+ + L+GG+ D +L++ I
Sbjct: 81 MQVG---ALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANI 137
Query: 511 LVATPGRLLDHIENKSG---LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
++ATPGRL D K+ L+ + L +LVLDEAD LLD+GF + I+ LP++R+
Sbjct: 138 IIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRR 197
Query: 568 SLLFSATMPKEL--VLK---REHTYIDT----VGLGSVE-TPVKVSKY 605
+ LFSAT +EL +++ R I V SV+ TP K+S Y
Sbjct: 198 TGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNY 245
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 305 (112.4 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 73/197 (37%), Positives = 109/197 (55%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ PL + AL G++ MT VQ AT+ + KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LHPLVLGALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I ++ PTRELA QI K+ + +GG D R +
Sbjct: 76 EKLKKNQVGAI---VITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQ 132
Query: 506 DPCQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K+ GL + + L +LVLDEAD LLD+GF + I++ L
Sbjct: 133 HGGNIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTILEFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 310 (114.2 bits), Expect = 3.0e-24, P = 3.0e-24
Identities = 77/199 (38%), Positives = 115/199 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+ P ++ L +AG+ T +Q T L+ +D V AKTG+GK++ +L+PA
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF-- 494
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + ++ P VLIL PTRELA+QI EA+ ++ I L GG
Sbjct: 495 ILLRHCRNDSRNGPT--VLILAPTRELATQIQDEALRFGRS-SRISCTCLYGGAPKGPQL 551
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ LE I+VATPGRL D +E K + + +LVLDEAD +LD+GF + IV+
Sbjct: 552 KELERG-ADIVVATPGRLNDILEMKM---IDFQQVSLLVLDEADRMLDMGFEPQIRKIVN 607
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RRQ+L+++AT PKE+
Sbjct: 608 EIPPRRQTLMYTATWPKEV 626
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 300 (110.7 bits), Expect = 3.0e-24, P = 3.0e-24
Identities = 77/204 (37%), Positives = 109/204 (53%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ F + P + L G+ MT +Q +L A L+G+D + + KTG+GK+ AF L
Sbjct: 1 MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
VL + + + L+LCPTRELA Q+A + L + I VLTL GG
Sbjct: 61 ----GVLSNLNVKRFR----VQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
LE ILV TPGR+LDH+ + L L LVLDEAD +L++GF++ +
Sbjct: 113 MGPQIGSLEHG-AHILVGTPGRILDHLSKDR---IDLSELNTLVLDEADRMLEMGFQEAL 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E I+ P RQ+LLFSAT P +
Sbjct: 169 EAIIAAAPAERQTLLFSATYPASI 192
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 307 (113.1 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 79/217 (36%), Positives = 125/217 (57%)
Query: 382 DECGISPLTI-----KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+E IS L++ ++L G + +Q A L L+G+D + +AKTGTGK++AF +P
Sbjct: 100 EELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIP 159
Query: 437 AIEAVLKATSSST----TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
I+ + + T + +P L+L PTRELA Q+ E + ++ + + + G
Sbjct: 160 IIKRLTEEAGDYTAFRRSGRLPKF--LVLAPTRELAKQVEKE---IKESAPYLSTVCVYG 214
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G + + Q L ++V TPGR++D IE G S++L ++ LVLDEAD +L +GF
Sbjct: 215 GVSYTIQQSALTRG-VDVVVGTPGRIIDLIE---GRSLKLGEVEYLVLDEADQMLAVGFE 270
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYID 589
+ VE+I++ LP +RQS+LFSATMP V K Y+D
Sbjct: 271 EAVESILENLPTKRQSMLFSATMPT-WVKKLARKYLD 306
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 292 (107.8 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 72/201 (35%), Positives = 109/201 (54%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K + +CGIS + AL Y + T +Q + A + G+D + AKTG+GK+IAFLLP
Sbjct: 357 KTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 416
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+L + P+ V I+ PTRELA QI E K+ + V+ + GGT
Sbjct: 417 RHILDQRPVGEAE--GPLAV-IMTPTRELALQITKECKKFSKSL-ALRVVCVYGGTGISE 472
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
L+ +I+V TPGR++D + +G L + +V+DEAD + D+GF V I
Sbjct: 473 QIAELKRG-AEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRI 531
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
VD + RQ+++FSAT P+ +
Sbjct: 532 VDNVRPDRQTVMFSATFPRTM 552
Score = 66 (28.3 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 24/113 (21%), Positives = 51/113 (45%)
Query: 237 STRDKAGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKCFVGKRRFKRNXXXXXXXXX 296
S+RD+ + + + +R+ G ++E ++ + + KKK K K
Sbjct: 66 SSRDRRRSRSRERRRSKSRSRGRSKEKPENGDQTAD-KKKIKEEKEEEKPEDQDFDQNTL 124
Query: 297 XXXXXXXXXKVEGWRDVKKMGSSASLG--KYDMKITKRVPLKSLEDEHDFEEQ 347
+VE WR+ ++ + ++G K +++ K+ SLED+ D +E+
Sbjct: 125 EEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDDEE 177
Score = 39 (18.8 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 87 ETNQHKPMSPDEHVKALADRFMK 109
+T Q K + P +H K + F K
Sbjct: 296 QTKQRKVLEPVDHQKIQYEPFRK 318
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 298 (110.0 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 74/202 (36%), Positives = 118/202 (58%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS ++F + + P +AL G+ T +Q +L L+ KD +A+TGTGK++AFL+
Sbjct: 6 LSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV 65
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
+L ++ QL P +I+ PTRELA QIA +AI L K H + V + GG
Sbjct: 66 ATFNHLLSSSIPEGRQLNQP-RAIIMAPTRELAIQIAKDAILLAK-HTRLKVGIVYGGES 123
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ V QR++ IL+ T GR++D++ + G+ + L ++ +VLDEAD + DLGF KD+
Sbjct: 124 YDV-QRKVLDQGVDILIGTTGRIIDYV--RQGI-INLNAIQAVVLDEADRMFDLGFIKDI 179
Query: 556 ENIVDCLPR--RRQSLLFSATM 575
+ +P +R ++LFSAT+
Sbjct: 180 RFLFRRMPNADQRLNMLFSATL 201
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 298 (110.0 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 74/202 (36%), Positives = 118/202 (58%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS ++F + + P +AL G+ T +Q +L L+ KD +A+TGTGK++AFL+
Sbjct: 6 LSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV 65
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
+L ++ QL P +I+ PTRELA QIA +AI L K H + V + GG
Sbjct: 66 ATFNHLLSSSIPEGRQLNQP-RAIIMAPTRELAIQIAKDAILLAK-HTRLKVGIVYGGES 123
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ V QR++ IL+ T GR++D++ + G+ + L ++ +VLDEAD + DLGF KD+
Sbjct: 124 YDV-QRKVLDQGVDILIGTTGRIIDYV--RQGI-INLNAIQAVVLDEADRMFDLGFIKDI 179
Query: 556 ENIVDCLPR--RRQSLLFSATM 575
+ +P +R ++LFSAT+
Sbjct: 180 RFLFRRMPNADQRLNMLFSATL 201
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 302 (111.4 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 79/226 (34%), Positives = 123/226 (54%)
Query: 383 ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVL 442
+ G++ +A + +++Q + L+GKD + A+TG+GK+ AF LP + A+L
Sbjct: 65 DLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALL 124
Query: 443 KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
+ + L+L PTRELA QI E L + GI +VGG +
Sbjct: 125 ENPQR--------YFALVLTPTRELAFQIG-EQFEALGSGIGIKCCVVVGGMDMVAQGLQ 175
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L P I++ATPGRL+DH+EN G +++ +K LV+DEAD +L++ F +++ I+ L
Sbjct: 176 LAKKP-HIIIATPGRLVDHLENMKGFNLK--AIKYLVMDEADRILNMDFEVELDKILKVL 232
Query: 563 PRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIY 608
PR R++ LFSATM K+ V K + S++ PVKV N Y
Sbjct: 233 PRERRTFLFSATMTKK-VKKLQRA--------SLKDPVKVEVSNKY 269
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 305 (112.4 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 79/201 (39%), Positives = 115/201 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S + A+ AAGY Q T VQ+ + A L+G+D +V A+TGTGK+ F LP +E
Sbjct: 3 FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 441 VLKATSSSTTQLVPPIY--VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ +Q P VL+L PTRELA+Q+ ++ L + GG
Sbjct: 63 LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVH-DSFKLYARDLKFVSACIFGGVGMN- 120
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
Q + + +LVA PGRLLD + + SV L +++LVLDEAD +LD+GF DV+ +
Sbjct: 121 PQVQAMARGVDVLVACPGRLLD-LAGQG--SVDLSHVEILVLDEADRMLDMGFVHDVKKV 177
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ LP +RQ+LLFSAT K++
Sbjct: 178 LARLPAKRQNLLFSATFSKDI 198
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 307 (113.1 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 77/199 (38%), Positives = 109/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA+TA G+ Q T +Q+A + L GKD A TGTGK+ AF LP +E
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ S P VL+L PTREL Q+ + L I VGG K +
Sbjct: 249 LIYKPRQS-----PVTRVLVLVPTRELGIQVHS-VTKQLAQFCNITTCLAVGGLDVKSQE 302
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + P IL+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 303 AALRAAP-DILIATPGRLIDHLHNCP--SFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 359
Query: 561 CLPRRRQSLLFSATMPKEL 579
RQ++LFSATM E+
Sbjct: 360 MCSHHRQTMLFSATMTDEV 378
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 299 (110.3 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 78/207 (37%), Positives = 115/207 (55%)
Query: 382 DECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV 441
D G+S +KA+ A GY +T +Q+ + +G D + A+TGTGK+ AF LP ++A+
Sbjct: 4 DSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAI 63
Query: 442 LKAT---SSSTTQLVP-----------PIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487
KA SSTT I LIL PTRELA+Q+A + I + I
Sbjct: 64 AKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVA-DNIKQFSQYLPIKS 122
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ GG + Q ++ +LVATPGRLL+H+ ++ V L +K LVLDEAD +L
Sbjct: 123 GVVYGGGKM-ASQTKMLKQGLDVLVATPGRLLEHLALRN---VDLSQVKFLVLDEADRML 178
Query: 548 DLGFRKDVENIVDCLPRRRQSLLFSAT 574
D+GF D+E ++ + + Q+L+FSAT
Sbjct: 179 DMGFLTDIEKLLLAVKHKHQTLMFSAT 205
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 306 (112.8 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 76/205 (37%), Positives = 120/205 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 263 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAH 322
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+++ T+S +L P +I+ PTREL +QI EA + + + GGT+F
Sbjct: 323 MMRDGITASRFKELQEP-ECIIVAPTRELINQIYLEA-RKFSFGTCVRAVVIYGGTQFGH 380
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 381 SVRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQVKYLVLDEADRMLDMGFGPEMKKL 436
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+LLFSAT P+E+
Sbjct: 437 ISCPGMPSKEQRQTLLFSATFPEEI 461
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 305 (112.4 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 76/205 (37%), Positives = 120/205 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 264 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAH 323
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+++ T+S +L P +I+ PTREL +QI EA + + + GGT+F
Sbjct: 324 MMRDGITASRFKELQEP-ECIIVAPTRELINQIYLEA-RKFSFGTCVRAVVIYGGTQFGH 381
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 382 SIRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQVKYLVLDEADRMLDMGFGPEMKKL 437
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+LLFSAT P+E+
Sbjct: 438 ISCPGMPSKEQRQTLLFSATFPEEI 462
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 300 (110.7 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 79/202 (39%), Positives = 114/202 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++P ++ G + T VQ + + L+G+D + AKTG+GK+ AF+LP ++
Sbjct: 7 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ- 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
VL I+ L+L PTRELA QIA E +L G+ +VGG
Sbjct: 66 VLSEDPYG-------IFCLVLTPTRELAYQIA-EQFRVLGKPLGLKDCVVVGGLDMVAQA 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVEN 557
L P +++ATPGRL DH+ + + S++ LK LVLDEAD LL+ G F D+E
Sbjct: 118 LELSRKP-HVVIATPGRLADHLRSSNTFSLKK--LKFLVLDEADRLLEQGCADFTADLEV 174
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I++ +P RRQ+LLFSAT+ L
Sbjct: 175 ILEAVPARRQTLLFSATLTDTL 196
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 306 (112.8 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 77/200 (38%), Positives = 112/200 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA+TA G+ Q T +Q+A + L GKD A TGTGK+ AF LP +E
Sbjct: 186 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 245
Query: 441 VL-KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ K ++ T+ VL+L PTREL Q+ + L I VGG K
Sbjct: 246 LIYKPRQAAVTR------VLVLVPTRELGIQVHS-VTKQLAQFCSITTCLAVGGLDVKSQ 298
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L + P IL+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 299 EAALRAAP-DILIATPGRLIDHLHNCP--SFHLSSIEVLILDEADRMLDEYFEEQMKEII 355
Query: 560 DCLPRRRQSLLFSATMPKEL 579
RQ++LFSATM E+
Sbjct: 356 RMCSHHRQTMLFSATMTDEV 375
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 302 (111.4 bits), Expect = 4.4e-24, P = 4.4e-24
Identities = 80/211 (37%), Positives = 125/211 (59%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F+E + K ++ GY ++T VQ+ ++ G+D + A+TG+GK+ AF
Sbjct: 165 PLLA---FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAF 221
Query: 434 LLPAIEAVLK-ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
LLP ++ ++K ++S Q +I+ PTREL +QI EA + I + + G
Sbjct: 222 LLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYG-TCIRPVVIYG 280
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
GT+ R++ C IL ATPGRLLD IE K +S L+ +K LVLDEAD +LD+GF
Sbjct: 281 GTQTGHSIRQIMQG-CNILCATPGRLLDIIE-KGKIS--LVEVKYLVLDEADRMLDMGFG 336
Query: 553 KDVENIVDC--LPR--RRQSLLFSATMPKEL 579
D++ ++ +P RRQ+L+FSAT P+E+
Sbjct: 337 LDMKKLISYPEMPSKDRRQTLMFSATFPEEV 367
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 299 (110.3 bits), Expect = 4.5e-24, P = 4.5e-24
Identities = 80/202 (39%), Positives = 114/202 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S I+ G + T VQE + A L+G+D + AKTG+GK+ AF+LP
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLP---- 59
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
VL+ S ++ L+L PTRELA QIA E +L G+ +VGG
Sbjct: 60 VLQKLSEDPYG----VFCLVLTPTRELAYQIA-EQFRVLGKPLGLKDCIIVGGMDMVTQG 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVEN 557
L P ++VATPGRL DHI +S ++ L ++ L++DEAD LL+ G F KD+E
Sbjct: 115 LELSKKP-HVVVATPGRLADHI--RSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEV 171
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I+ +P +RQ+LLFSAT+ L
Sbjct: 172 ILSAVPAKRQTLLFSATLTDTL 193
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 306 (112.8 bits), Expect = 4.7e-24, P = 4.7e-24
Identities = 72/201 (35%), Positives = 114/201 (56%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E +S T K + + + +T +Q + L+G+D + AKTG+GK++AFL+P +
Sbjct: 49 KAFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLL 108
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + + + +L L+L PTRELA Q + + + H ++GG +
Sbjct: 109 EKLYREQWTQEAKLG----ALVLSPTRELAVQ-TFQVLRKIGRHHLFSAGLVIGGKSVRE 163
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L IL+ TPGR+L H++ G V L++LVLDEAD ++DLGF++DV+ +
Sbjct: 164 EAEALSR--MNILIGTPGRILQHLDQTHGFDVD--NLQLLVLDEADRIMDLGFQRDVDAL 219
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
V LP RQ+LLFSAT K++
Sbjct: 220 VQHLPTTRQTLLFSATQSKKV 240
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 305 (112.4 bits), Expect = 4.7e-24, P = 4.7e-24
Identities = 76/205 (37%), Positives = 120/205 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 275 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAH 334
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+++ T+S +L P +I+ PTREL +QI EA + + + GGT+F
Sbjct: 335 MMRDGITASRFKELQEP-ECIIVAPTRELINQIYLEA-RKFSFGTCVRAVVIYGGTQFGH 392
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 393 SIRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQVKYLVLDEADRMLDMGFGPEMKKL 448
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+LLFSAT P+E+
Sbjct: 449 ISCPGMPSKEQRQTLLFSATFPEEI 473
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 305 (112.4 bits), Expect = 4.7e-24, P = 4.7e-24
Identities = 76/205 (37%), Positives = 120/205 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 275 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAH 334
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+++ T+S +L P +I+ PTREL +QI EA + + + GGT+F
Sbjct: 335 MMRDGITASRFKELQEP-ECIIVAPTRELINQIYLEA-RKFSFGTCVRAVVIYGGTQFGH 392
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 393 SIRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQVKYLVLDEADRMLDMGFGPEMKKL 448
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+LLFSAT P+E+
Sbjct: 449 ISCPGMPSKEQRQTLLFSATFPEEI 473
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 302 (111.4 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 80/211 (37%), Positives = 125/211 (59%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F+E + K ++ GY ++T VQ+ ++ G+D + A+TG+GK+ AF
Sbjct: 165 PLLA---FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAF 221
Query: 434 LLPAIEAVLK-ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
LLP ++ ++K ++S Q +I+ PTREL +QI EA + I + + G
Sbjct: 222 LLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYG-TCIRPVVIYG 280
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
GT+ R++ C IL ATPGRLLD IE K +S L+ +K LVLDEAD +LD+GF
Sbjct: 281 GTQTGHSIRQIMQG-CNILCATPGRLLDIIE-KGKIS--LVEVKYLVLDEADRMLDMGFG 336
Query: 553 KDVENIVDC--LPR--RRQSLLFSATMPKEL 579
D++ ++ +P RRQ+L+FSAT P+E+
Sbjct: 337 LDMKKLISYPEMPSKDRRQTLMFSATFPEEV 367
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 302 (111.4 bits), Expect = 5.9e-24, P = 5.9e-24
Identities = 91/283 (32%), Positives = 149/283 (52%)
Query: 345 EEQVELIRKEISXXXXXXXXXXXXXXXXXPILSQKRFDECGISPLTIKALTAAGYIQMTR 404
EEQ+E ++ E+ P++ F C + + L AAGY T
Sbjct: 146 EEQIERVKAELGIVSVGTEVCR-------PVIE---FQHCRFPTVLERNLKAAGYEAPTP 195
Query: 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPT 464
VQ + L G+D + A TG+GK++AFLLP + L++ S+S + P LIL PT
Sbjct: 196 VQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESASPS--CPAC--LILTPT 251
Query: 465 RELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN 524
RELA QI +A L++ + LVGG RL+ + +I++ TPGRLL+ ++
Sbjct: 252 RELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHN-IKIVIGTPGRLLEILKQ 310
Query: 525 KSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP---KELVL 581
K+ V+L ++ +V+DEAD +L +GF++ V +I++ +P Q+LL SAT+P ++L
Sbjct: 311 KA---VQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTSATIPTGTQQLAE 367
Query: 582 KREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKIQAFYII 624
+ H + T+ +G P + I ++V S K + F I+
Sbjct: 368 RLTHDPV-TITIGQKNQPC-ANVRQIVLWVEEPSKKKKLFEIL 408
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 304 (112.1 bits), Expect = 6.6e-24, P = 6.6e-24
Identities = 76/209 (36%), Positives = 121/209 (57%)
Query: 375 ILSQKRFDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
+ + F+E + P + L MT VQ+ T+ + GKDAVV+++TG+GK++A+
Sbjct: 150 VFTSNTFEELNLHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAY 209
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
+P ++ L+A + P+ V+I+ PTRELA Q LL+ I L+GG
Sbjct: 210 GIPMVQ-FLQAIQPKVKRSDGPLAVVIV-PTRELALQSFQMFQKLLRPFTWIVPGVLMGG 267
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ K ++ RL +L++TPGRL+DHI+N LS+ ++ L+LDEAD +LDLGF K
Sbjct: 268 EKKKAEKARLRKG-INVLISTPGRLVDHIKNT--LSIAFSAVRWLILDEADRILDLGFEK 324
Query: 554 DVENIVDCLPRR---RQSLLFSATMPKEL 579
D+ I++ L RQ++L SAT+ + L
Sbjct: 325 DLTVILNALNAAGPDRQNVLLSATITEGL 353
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 304 (112.1 bits), Expect = 7.1e-24, P = 7.1e-24
Identities = 76/199 (38%), Positives = 109/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA+TA G+ Q T +Q+A + L GKD A TGTGK+ AF LP +E
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ + P VL+L PTREL Q+ + L I VGG K +
Sbjct: 249 LIYKPRQA-----PVTRVLVLVPTRELGIQVHS-VTKQLAQFCSITTCLAVGGLDVKSQE 302
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + P IL+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 303 AALRAAP-DILIATPGRLIDHLHNCP--SFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 359
Query: 561 CLPRRRQSLLFSATMPKEL 579
RQ++LFSATM E+
Sbjct: 360 MCSHHRQTMLFSATMTDEV 378
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 303 (111.7 bits), Expect = 7.3e-24, P = 7.3e-24
Identities = 78/205 (38%), Positives = 118/205 (57%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYI-QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
+ + F + + P I +T I MT VQ+ T+ L+GKDA+V+++TG+GK++A+
Sbjct: 92 VFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQTGSGKTLAY 151
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
+P +++ L+ S + P Y L+L PTRELA Q LLK I L+GG
Sbjct: 152 GIPLVQS-LQGMQSKIQRSDGP-YALVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGG 209
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ K ++ RL IL++TPGRL+DHI KS + + L++DEAD +LDLGF K
Sbjct: 210 EKRKSEKARLRKG-INILISTPGRLVDHI--KSTECIHFRRTQWLIIDEADRILDLGFEK 266
Query: 554 DVENIVDCLPRRR---QSLLFSATM 575
DV I++ L R Q++L SAT+
Sbjct: 267 DVTVILNALNAERETRQNVLLSATL 291
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 304 (112.1 bits), Expect = 7.4e-24, P = 7.4e-24
Identities = 75/200 (37%), Positives = 114/200 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA++ G+ Q T +Q+A + L GKD A TGTGK+ AF+LP +E
Sbjct: 203 FHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLER 262
Query: 441 VL-KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ K + T+ VL+L PTREL Q+ A L + I VGG K
Sbjct: 263 LIYKPRETQVTR------VLVLVPTRELGIQVHTVARQLAQ-FTTISTCLAVGGLDLKSQ 315
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L + P +L+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 316 EAALRAGP-DVLIATPGRLIDHLHNTP--SFELSQIEILILDEADRMLDEYFEEQMKEII 372
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+RQ++LFSATM +E+
Sbjct: 373 RMCAYQRQTMLFSATMSEEV 392
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 304 (112.1 bits), Expect = 7.8e-24, P = 7.8e-24
Identities = 76/199 (38%), Positives = 109/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA+TA G+ Q T +Q+A + L GKD A TGTGK+ AF LP +E
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ + P VL+L PTREL Q+ + L I VGG K +
Sbjct: 280 LIYKPRQA-----PVTRVLVLVPTRELGIQVHS-VTRQLAQFCNITTCLAVGGLDVKSQE 333
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + P IL+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 334 AALRAAP-DILIATPGRLIDHLHNCP--SFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 390
Query: 561 CLPRRRQSLLFSATMPKEL 579
RQ++LFSATM E+
Sbjct: 391 MCSHHRQTMLFSATMTDEV 409
>ASPGD|ASPL0000028276 [details] [associations]
symbol:AN5623 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001305
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268799
ProteinModelPortal:C8VFX5 EnsemblFungi:CADANIAT00003447 OMA:STIGKMG
Uniprot:C8VFX5
Length = 567
Score = 300 (110.7 bits), Expect = 8.9e-24, P = 8.9e-24
Identities = 85/229 (37%), Positives = 126/229 (55%)
Query: 391 IKALTAAGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
++AL G+ M+ VQ+ L+ + D +V+AKTGTGK++AFLLPA+ +++ S
Sbjct: 23 LQALNVLGFEYMSPVQQRVLTELPTWRSDCLVQAKTGTGKTVAFLLPALHCLIQGQSQVR 82
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGT-RFKVDQRRLESDP 507
V +LI+ PTRELA QIA L + VGGT R R + DP
Sbjct: 83 RGQVA---ILIITPTRELAQQIAKSCDELTSQLSRPLECHIAVGGTARASAHSRFMNGDP 139
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR- 566
ILVATPGRL D++ ++S + +L ++ LVLDEAD +L+ GF DV+ I+ +P +
Sbjct: 140 -SILVATPGRLKDYL-SESETAEKLKDIQTLVLDEADTMLETGFLADVKQILKLIPSKST 197
Query: 567 --QSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNI 607
Q + FSAT+P ++ VL +T I TV T +V +Y +
Sbjct: 198 GWQGMCFSATLPPKVKDVVSVVLNPGYTSISTVDKNEPPTHERVPQYYV 246
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 302 (111.4 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 87/228 (38%), Positives = 131/228 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + + AGY+++T VQ+ ++ + G+D + A+TG+GK+ AFLLP +
Sbjct: 276 FEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSY 335
Query: 441 VLKA--TSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV--GGTRF 496
++ T+S QL P +I+ PTREL +QI +A K G V +V GG +
Sbjct: 336 MMNEGITASQYLQLQEP-EAIIIAPTRELINQIYLDA---RKFSYGTCVRPVVVYGGIQP 391
Query: 497 KVDQRRLESDPCQILVATPGRLLDHI-ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
R +E C IL ATPGRLLD + + K GLS L+ LVLDEAD +LD+GF ++
Sbjct: 392 VHAMRDVEKG-CNILCATPGRLLDIVSKEKIGLSK----LRYLVLDEADRMLDMGFAPEI 446
Query: 556 ENIVDC--LP--RRRQSLLFSATMPKEL------VLKREHTYIDTVGL 593
E ++ +P +RQ+L+FSAT P+E+ LK EH ++ VGL
Sbjct: 447 EKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFV-VVGL 493
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 308 (113.5 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 78/200 (39%), Positives = 113/200 (56%)
Query: 377 SQKR-FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
S KR F E +S ++ L A + T +Q+ T+ L GKD V A TG+GK+ AF++
Sbjct: 295 SAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVV 354
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E +L + VP V IL PTRELA Q A L D I LVGG
Sbjct: 355 PILERLL-----FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTD-ITFCQLVGGFS 408
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ + L+ P +++ATPGR +DH+ N + +V L++LVLDEAD +L+ GF ++
Sbjct: 409 LREQENVLKKRP-DVIIATPGRFIDHMRNSASFTVDT--LEILVLDEADRMLEDGFADEL 465
Query: 556 ENIVDCLPRRRQSLLFSATM 575
I+ +P+ RQ++LFSATM
Sbjct: 466 NEILTTIPKSRQTMLFSATM 485
Score = 40 (19.1 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 109 KEGAEDLWNEDDGPVKSEQRPRSGAEANQ 137
+E +D EDDG + SE GA NQ
Sbjct: 89 EEEEQDA-GEDDGALDSEFEFDVGAVVNQ 116
Score = 38 (18.4 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 244 FDTG---NKAKPFARNLGNNRENGDSKNMSE-FMKKKCFVGKRRFKR 286
FD G N+ F G N E+G+ KN ++ + + +RR KR
Sbjct: 108 FDVGAVVNQVVEFD-GWGGNGEDGEKKNGNKKAVDIDDIIERRREKR 153
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 290 (107.1 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 72/195 (36%), Positives = 107/195 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ + L GY Q T +Q + A L +D + A+TGTGK+ AF LP ++
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L A + S I L+L PTRELA Q+ + K D I V GG + Q
Sbjct: 62 LLMADNQSD-HAAKAIRALVLVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQ 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ +L+ATPGRLLDH+ + G ++ L L LV DEAD +LD+GF +++ ++
Sbjct: 120 AVFNAG-IDVLIATPGRLLDHL--RQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLK 175
Query: 561 CLPRRRQSLLFSATM 575
+P +RQ+LLFSAT+
Sbjct: 176 QVPAQRQTLLFSATL 190
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 290 (107.1 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 72/195 (36%), Positives = 107/195 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ + L GY Q T +Q + A L +D + A+TGTGK+ AF LP ++
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L A + S I L+L PTRELA Q+ + K D I V GG + Q
Sbjct: 62 LLMADNQSD-HAAKAIRALVLVPTRELALQVQQSFVKYAKGTD-IRVGIAYGGVSIEAQQ 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ +L+ATPGRLLDH+ + G ++ L L LV DEAD +LD+GF +++ ++
Sbjct: 120 AVFNAG-IDVLIATPGRLLDHL--RQG-ALNLNQLNTLVFDEADRMLDMGFMDEIQAVLK 175
Query: 561 CLPRRRQSLLFSATM 575
+P +RQ+LLFSAT+
Sbjct: 176 QVPAQRQTLLFSATL 190
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 71/207 (34%), Positives = 117/207 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+ P ++A+T G+ + T +QE + LEGKD + +A+TG+GK+ A+ +P ++
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 441 VL--KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV-LTLVGGTRFK 497
+L KAT Q V L+L PT+ELA Q A I L + V + V
Sbjct: 69 LLHRKATGPVVEQAVRG---LVLVPTKELARQ-AQSMIQQLATYCARDVRVANVSAAEDS 124
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
V QR + + ++V TP R+L H++ S L +R L++LV+DEAD L GF +++++
Sbjct: 125 VSQRAVLMEKPDVVVGTPSRILSHLQQDS-LKLR-DSLELLVVDEADLLFSFGFEEELKS 182
Query: 558 IVDCLPRRRQSLLFSATMPKELVLKRE 584
++ LPR Q+ L SAT +++ +E
Sbjct: 183 LLCHLPRIYQAFLMSATFNEDVQALKE 209
>UNIPROTKB|J3KT12 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1
ProteinModelPortal:J3KT12 Ensembl:ENST00000582746 Uniprot:J3KT12
Length = 341
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/203 (33%), Positives = 114/203 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +AL ++ G +GGT +
Sbjct: 94 IELDLKATQA-----------LVLAPTRELAQQIQKVVMAL-GDYMGASCHACIGGTNVR 141
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 142 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 198
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 199 IFQKLNSNTQVVLLSATMPSDVL 221
>UNIPROTKB|J3KTB5 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000584860
Uniprot:J3KTB5
Length = 257
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 69/203 (33%), Positives = 114/203 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 18 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 77
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +AL ++ G +GGT +
Sbjct: 78 IELDLKATQA-----------LVLAPTRELAQQIQKVVMAL-GDYMGASCHACIGGTNVR 125
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 126 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 182
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 183 IFQKLNSNTQVVLLSATMPSDVL 205
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 307 (113.1 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 77/199 (38%), Positives = 109/199 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +KA+TA G+ Q T +Q+A + L GKD A TGTGK+ AF LP +E
Sbjct: 210 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 269
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ S P VL+L PTREL Q+ + L I VGG K +
Sbjct: 270 LIYKPRQS-----PVTRVLVLVPTRELGIQVHS-VTKQLAQFCNITTCLAVGGLDVKSQE 323
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + P IL+ATPGRL+DH+ N S L +++L+LDEAD +LD F + ++ I+
Sbjct: 324 AALRAAP-DILIATPGRLIDHLHNCP--SFHLSSIEVLILDEADRMLDEYFEEQMKEIIR 380
Query: 561 CLPRRRQSLLFSATMPKEL 579
RQ++LFSATM E+
Sbjct: 381 MCSHHRQTMLFSATMTDEV 399
Score = 40 (19.1 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 80 DKADPDSETNQHKPMSPDEHVKALADRF-MKEGAEDLWNEDDG 121
D+ P+ E ++ S DE++ AD +KE + ++ G
Sbjct: 153 DEEGPEDEDSETDYSSADENILTKADTLKVKERKKKKKGQETG 195
>UNIPROTKB|E2R316 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 Ensembl:ENSCAFT00000035837 Uniprot:E2R316
Length = 483
Score = 296 (109.3 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 72/197 (36%), Positives = 108/197 (54%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P + AL G+ MT VQ AT+ ++ KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I I+ PTRELA Q+ K+ + +GG D R +
Sbjct: 76 EKLKKNQVGAI---IITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKE 132
Query: 506 DPCQILVATPGRLLDHIENK-SGLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K GL + + L++LVLDEAD LLD+GF + I++ L
Sbjct: 133 QGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>GENEDB_PFALCIPARUM|PF13_0037 [details] [associations]
symbol:PF13_0037 "DEAD box helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844509
HSSP:P10081 KO:K01509 RefSeq:XP_001349800.1
ProteinModelPortal:Q8IEP2 EnsemblProtists:PF13_0037:mRNA
GeneID:814016 KEGG:pfa:PF13_0037 EuPathDB:PlasmoDB:PF3D7_1307300
HOGENOM:HOG000280785 OMA:YKIIVFF ProtClustDB:CLSZ2433434
Uniprot:Q8IEP2
Length = 630
Score = 300 (110.7 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 81/249 (32%), Positives = 132/249 (53%)
Query: 399 YIQMTRVQEATLSACLEGK---DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455
Y + T VQ ++ K D +++AKTGTGK+IA+LL +I ++K S
Sbjct: 170 YKEFTDVQRIVYDNIIKEKKQNDLLIQAKTGTGKTIAYLLLSINDIIKNKILS------- 222
Query: 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515
++ LI+ PTRELA+QI E LL I VLTL GG + + DQ + I++ T
Sbjct: 223 VHTLIIVPTRELANQIYNECKLLLTYKHNINVLTLTGGIKRRDDQLNIRRIKPDIIICTV 282
Query: 516 GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
GRLLDH E+ + LKML++DEAD LL G+ D+ ++ LP R+++L SAT+
Sbjct: 283 GRLLDHFESTYLFNTLFENLKMLIIDEADQLLSTGYENDIHRLLTYLPSNRRNILLSATL 342
Query: 576 PKEL------VLKREHTYIDTVGLGSVETPVKVSKYNIY-----VFVLVLSIKIQAFYII 624
L + K ++ Y++ V S T ++ +Y ++ +++ ++ I+ +
Sbjct: 343 GYNLDEIRKKMCKSDYIYLNCVKDISKHTSDQLIQYVLFHKAIDTTIILYNLLIEHMRLN 402
Query: 625 CFVYTISMY 633
F Y I ++
Sbjct: 403 QFTYKIIVF 411
>UNIPROTKB|Q8IEP2 [details] [associations]
symbol:PF13_0037 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844509 HSSP:P10081 KO:K01509 RefSeq:XP_001349800.1
ProteinModelPortal:Q8IEP2 EnsemblProtists:PF13_0037:mRNA
GeneID:814016 KEGG:pfa:PF13_0037 EuPathDB:PlasmoDB:PF3D7_1307300
HOGENOM:HOG000280785 OMA:YKIIVFF ProtClustDB:CLSZ2433434
Uniprot:Q8IEP2
Length = 630
Score = 300 (110.7 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 81/249 (32%), Positives = 132/249 (53%)
Query: 399 YIQMTRVQEATLSACLEGK---DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP 455
Y + T VQ ++ K D +++AKTGTGK+IA+LL +I ++K S
Sbjct: 170 YKEFTDVQRIVYDNIIKEKKQNDLLIQAKTGTGKTIAYLLLSINDIIKNKILS------- 222
Query: 456 IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATP 515
++ LI+ PTRELA+QI E LL I VLTL GG + + DQ + I++ T
Sbjct: 223 VHTLIIVPTRELANQIYNECKLLLTYKHNINVLTLTGGIKRRDDQLNIRRIKPDIIICTV 282
Query: 516 GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
GRLLDH E+ + LKML++DEAD LL G+ D+ ++ LP R+++L SAT+
Sbjct: 283 GRLLDHFESTYLFNTLFENLKMLIIDEADQLLSTGYENDIHRLLTYLPSNRRNILLSATL 342
Query: 576 PKEL------VLKREHTYIDTVGLGSVETPVKVSKYNIY-----VFVLVLSIKIQAFYII 624
L + K ++ Y++ V S T ++ +Y ++ +++ ++ I+ +
Sbjct: 343 GYNLDEIRKKMCKSDYIYLNCVKDISKHTSDQLIQYVLFHKAIDTTIILYNLLIEHMRLN 402
Query: 625 CFVYTISMY 633
F Y I ++
Sbjct: 403 QFTYKIIVF 411
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 299 (110.3 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 74/197 (37%), Positives = 110/197 (55%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+SP ++AL G+ +MT VQ AT+ + KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I I+ PTRELA QI K+ + L+GG D + +
Sbjct: 76 EKLKKMQVGAI---IITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKE 132
Query: 506 DPCQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K+ GL + + L +LVLDEAD LLD+GF + I+ L
Sbjct: 133 HGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 296 (109.3 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 77/204 (37%), Positives = 108/204 (52%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S + F E + P I+A Y + T +Q + LEG D + A+TG+GK+ AF +P
Sbjct: 79 SFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIP 138
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ + P Y IL PTRELA QI E L + G+ +VGG
Sbjct: 139 ILNRLWHDQE--------PYYACILAPTRELAQQIK-ETFDSLGSLMGVRSTCIVGGMNM 189
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
R L P I++ATPGRL+DH+EN G S+R LK LV+DEAD LLD+ F ++
Sbjct: 190 MDQARDLMRKP-HIIIATPGRLMDHLENTKGFSLRK--LKFLVMDEADRLLDMEFGPVLD 246
Query: 557 NIVDCLP-RRRQSLLFSATMPKEL 579
I+ +P + R + LFSATM ++
Sbjct: 247 RILKIIPTQERTTYLFSATMTSKI 270
>UNIPROTKB|D6RCM4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HGNC:HGNC:18700 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RCM4 SMR:D6RCM4 Ensembl:ENST00000506511
ArrayExpress:D6RCM4 Bgee:D6RCM4 Uniprot:D6RCM4
Length = 518
Score = 296 (109.3 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 74/205 (36%), Positives = 118/205 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 270 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAH 329
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ T+S +L P +I+ PTREL +QI EA + + + GGT+
Sbjct: 330 MMHDGITASRFKELQEP-ECIIVAPTRELVNQIYLEA-RKFSFGTCVRAVVIYGGTQLGH 387
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 388 SIRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQIKYLVLDEADRMLDMGFGPEMKKL 443
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+L+FSAT P+E+
Sbjct: 444 ISCPGMPSKEQRQTLMFSATFPEEI 468
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 295 (108.9 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 73/196 (37%), Positives = 108/196 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+ + + AG+ + + +QE ++ L G+D + +AK GTGK+ AF++PA+E
Sbjct: 49 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET 108
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S I LIL PTRELA Q ++ L H GI V+ GGT + D
Sbjct: 109 INPKVSK--------IQCLILVPTRELAMQ-TSQVCKTLGKHLGINVMVTTGGTTLRDDI 159
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL+ DP I+V TPGR+LD + K+ L M ++DEAD LL + F +E ++
Sbjct: 160 LRLQ-DPVHIVVGTPGRILD-LAGKNVAD--LSECPMFIMDEADKLLSIEFTPVIEQLLQ 215
Query: 561 CLPRRRQSLLFSATMP 576
P+ RQ +LFSAT P
Sbjct: 216 FHPKDRQVMLFSATFP 231
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 293 (108.2 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 79/217 (36%), Positives = 124/217 (57%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK I
Sbjct: 114 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDC---------I 164
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 165 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 223
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 224 RILDLI--KKGVA-KVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILLYSATFP 280
Query: 577 ----KELVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
K + L + Y + L T V++Y YV
Sbjct: 281 LSVQKFMTLHLQKPY--EINLMEELTLKGVTQYYAYV 315
>UNIPROTKB|F1P8J6 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969
EMBL:AAEX03014637 RefSeq:XP_543371.2 Ensembl:ENSCAFT00000011945
GeneID:486246 KEGG:cfa:486246 Uniprot:F1P8J6
Length = 599
Score = 296 (109.3 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 72/197 (36%), Positives = 108/197 (54%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P + AL G+ MT VQ AT+ ++ KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LHPQVLGALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I I+ PTRELA Q+ K+ + +GG D R +
Sbjct: 76 EKLKKNQVGAI---IITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKE 132
Query: 506 DPCQILVATPGRLLDHIENK-SGLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K GL + + L++LVLDEAD LLD+GF + I++ L
Sbjct: 133 QGGNIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 295 (108.9 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 71/194 (36%), Positives = 107/194 (55%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P + A+ A GY + + +Q+ ++ L G D + +A+TGTGK+ AF LP + +
Sbjct: 13 LHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRI---- 68
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
++ P LIL PTRELA Q+A K G+ V+ + GG + + +
Sbjct: 69 --DPSKREPQ--ALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRN 124
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
QI+VATPGRL DH+ + L + LVLDEAD +L LGF D+E I +P
Sbjct: 125 G-AQIVVATPGRLCDHLRRDEKV---LATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Query: 566 RQSLLFSATMPKEL 579
RQ++LFSAT+P+ +
Sbjct: 181 RQTVLFSATLPQSI 194
>UNIPROTKB|F5H5U2 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AC055713 EMBL:AC117503
HGNC:HGNC:20085 ChiTaRS:DDX55 IPI:IPI01010332
ProteinModelPortal:F5H5U2 SMR:F5H5U2 Ensembl:ENST00000538744
ArrayExpress:F5H5U2 Bgee:F5H5U2 Uniprot:F5H5U2
Length = 569
Score = 295 (108.9 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 73/197 (37%), Positives = 107/197 (54%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P + AL G+ MT VQ AT+ + KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I I+ PTRELA QI K+ + +GG D R +
Sbjct: 76 EKLKKSQVGAI---IITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQ 132
Query: 506 DPCQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K+ GL + + L +LVLDEAD LLD+GF + I++ L
Sbjct: 133 QGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 296 (109.3 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 78/187 (41%), Positives = 107/187 (57%)
Query: 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYV 458
Y++ T VQ + LEG+D + A+TG+GK+ AF P I ++K + +Y
Sbjct: 179 YVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYP 238
Query: 459 L--ILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
L IL PTRELASQI EA G+ V+ GGT R LE ILVATPG
Sbjct: 239 LAVILSPTRELASQIHDEA-KKFSYQTGVKVVVAYGGTPINQQLRELERG-VDILVATPG 296
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV---DCLPRR-RQSLLFS 572
RL D +E ++ +S+++ ++ L LDEAD +LD+GF + IV D PR RQ+LLFS
Sbjct: 297 RLNDLLE-RARVSMQM--IRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFS 353
Query: 573 ATMPKEL 579
AT P+E+
Sbjct: 354 ATFPREI 360
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 292 (107.8 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 79/202 (39%), Positives = 112/202 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++ G Q T VQ + A LEG+D + AKTG+GK+ AF+LP
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLP---- 59
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ S I+ L+L PTRELA QIA E +L G+ +VGG
Sbjct: 60 ILQKLSEDPYG----IFCLVLTPTRELAYQIA-EQFRVLGKPLGLKDCIIVGGMDMVAQA 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVEN 557
L P +++ATPGRL DH+ + + S++ ++ LV+DEAD LL+ G F D+E
Sbjct: 115 LELSRKP-HVVIATPGRLADHLRSSNTFSIKK--IRFLVMDEADRLLEQGCTDFTVDLEA 171
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I+ +P RRQ+LLFSAT+ L
Sbjct: 172 ILAAVPARRQTLLFSATLTDTL 193
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 292 (107.8 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 79/202 (39%), Positives = 112/202 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++ G Q T VQ + A LEG+D + AKTG+GK+ AF+LP
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLP---- 59
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ S I+ L+L PTRELA QIA E +L G+ +VGG
Sbjct: 60 ILQKLSEDPYG----IFCLVLTPTRELAYQIA-EQFRVLGKPLGLKDCIIVGGMDMVAQA 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVEN 557
L P +++ATPGRL DH+ + + S++ ++ LV+DEAD LL+ G F D+E
Sbjct: 115 LELSRKP-HVVIATPGRLADHLRSSNTFSIKK--IRFLVMDEADRLLEQGCTDFTVDLEA 171
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I+ +P RRQ+LLFSAT+ L
Sbjct: 172 ILAAVPARRQTLLFSATLTDTL 193
>UNIPROTKB|F1NJA0 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074969 IPI:IPI00590534
OMA:CACVEYW EMBL:AADN02034882 Ensembl:ENSGALT00000005224
Uniprot:F1NJA0
Length = 591
Score = 295 (108.9 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 74/197 (37%), Positives = 109/197 (55%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+SP + AL G+ +MT VQ AT+ + KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LSPGVLLALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I I+ PTRELA QI K+ + L+GG D + +
Sbjct: 76 EKLKKMQVGAI---IITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKE 132
Query: 506 DPCQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K+ GL + + L +LVLDEAD LLD+GF + I+ L
Sbjct: 133 HGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 292 (107.8 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 79/202 (39%), Positives = 112/202 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++ G Q T VQ + A LEG+D + AKTG+GK+ AF+LP
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLP---- 59
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ S I+ L+L PTRELA QIA E +L G+ +VGG
Sbjct: 60 ILQKLSEDPYG----IFCLVLTPTRELAYQIA-EQFRVLGKPLGLKDCIIVGGMDMVAQA 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVEN 557
L P +++ATPGRL DH+ + + S++ ++ LV+DEAD LL+ G F D+E
Sbjct: 115 LELSRKP-HVVIATPGRLADHLRSSNTFSIKK--IRFLVMDEADRLLEQGCTDFTVDLEA 171
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I+ +P RRQ+LLFSAT+ L
Sbjct: 172 ILAAVPTRRQTLLFSATLTDTL 193
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 295 (108.9 bits), Expect = 4.0e-23, P = 4.0e-23
Identities = 73/197 (37%), Positives = 107/197 (54%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P + AL G+ MT VQ AT+ + KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I I+ PTRELA QI K+ + +GG D R +
Sbjct: 76 EKLKKSQVGAI---IITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQ 132
Query: 506 DPCQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K+ GL + + L +LVLDEAD LLD+GF + I++ L
Sbjct: 133 QGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 295 (108.9 bits), Expect = 4.0e-23, P = 4.0e-23
Identities = 72/197 (36%), Positives = 108/197 (54%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P + AL G+ MT VQ AT+ ++ KD +A TG+GK++AF++P +E +L+
Sbjct: 16 LHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
V I ++ PTRELA QI K+ + +GG D R +
Sbjct: 76 EKLKKNQVGAI---VITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQ 132
Query: 506 DPCQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
I+VATPGRL D K+ GL + + L +LVLDEAD LLD+GF + I++ L
Sbjct: 133 HGGNIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFL 192
Query: 563 PRRRQSLLFSATMPKEL 579
P++R++ LFSAT +E+
Sbjct: 193 PKQRRTGLFSATQTQEV 209
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 291 (107.5 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 74/205 (36%), Positives = 119/205 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ G+D + A+TG+GK+ AFLLP +
Sbjct: 292 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAH 351
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+++ T+S +L P +I+ PTREL +QI EA + + + GGT+
Sbjct: 352 MMRDGITASRFKELQEP-ECIIVAPTRELINQIYLEA-RKFSFGTCVRAVVIYGGTQLGH 409
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I K + +R + K LVLDEAD +LD+GF +++ +
Sbjct: 410 SIRQIVQG-CNILCATPGRLMDVI-GKEKIGLRQV--KYLVLDEADRMLDMGFGPEMKKL 465
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+L+FSAT P+E+
Sbjct: 466 ISCPGMPSKEQRQTLMFSATFPEEI 490
Score = 51 (23.0 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 24/90 (26%), Positives = 37/90 (41%)
Query: 180 SESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRA-YFSGTDKRNF--CRNDG- 235
S +KF + S+ +++C D +T RN F +R Y G D R G
Sbjct: 99 SNNKFEE-GDSSGFWRESSIDCEDNQT----RN-RGFSKRGGYQDGNDSEALGSSRRGGR 152
Query: 236 SSTRD-KAGFDTGNKAKPFARNLGNNRENG 264
S R + GF G+ + ++ G R G
Sbjct: 153 GSFRGCRGGFGRGSPNSDYEQDEGTQRSGG 182
Score = 38 (18.4 bits), Expect = 9.5e-22, Sum P(2) = 9.5e-22
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 240 DKAGFDTGNKAKPFARNLGNNRENGD-SKNMSEFMK 274
+K + +G F R ++ E GD S FM+
Sbjct: 23 EKDRYSSGANGDTFNRTPASSSEMGDGSSRRDHFMR 58
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 291 (107.5 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 74/205 (36%), Positives = 119/205 (58%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ G+D + A+TG+GK+ AFLLP +
Sbjct: 292 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAH 351
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+++ T+S +L P +I+ PTREL +QI EA + + + GGT+
Sbjct: 352 MMRDGITASRFKELQEP-ECIIVAPTRELINQIYLEA-RKFSFGTCVRAVVIYGGTQLGH 409
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I K + +R + K LVLDEAD +LD+GF +++ +
Sbjct: 410 SIRQIVQG-CNILCATPGRLMDVI-GKEKIGLRQV--KYLVLDEADRMLDMGFGPEMKKL 465
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+L+FSAT P+E+
Sbjct: 466 ISCPGMPSKEQRQTLMFSATFPEEI 490
Score = 51 (23.0 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 24/90 (26%), Positives = 37/90 (41%)
Query: 180 SESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRA-YFSGTDKRNF--CRNDG- 235
S +KF + S+ +++C D +T RN F +R Y G D R G
Sbjct: 99 SNNKFEE-GDSSGFWRESSIDCEDNQT----RN-RGFSKRGGYQDGNDSEALGSSRRGGR 152
Query: 236 SSTRD-KAGFDTGNKAKPFARNLGNNRENG 264
S R + GF G+ + ++ G R G
Sbjct: 153 GSFRGCRGGFGRGSPNSDYEQDEGTQRSGG 182
Score = 38 (18.4 bits), Expect = 9.5e-22, Sum P(2) = 9.5e-22
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 240 DKAGFDTGNKAKPFARNLGNNRENGD-SKNMSEFMK 274
+K + +G F R ++ E GD S FM+
Sbjct: 23 EKDRYSSGANGDTFNRTPASSSEMGDGSSRRDHFMR 58
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 295 (108.9 bits), Expect = 4.3e-23, P = 4.3e-23
Identities = 74/204 (36%), Positives = 116/204 (56%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P++S F+ G P ++ + +AG+ T +Q + ++G+D V AKTG+GK++ +
Sbjct: 156 PLMS---FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGY 212
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L+P + + + S ++ P I L+L PTRELA+QI EA+ ++ I L GG
Sbjct: 213 LIPGFLHLQRIRNDS--RMGPTI--LVLSPTRELATQIQEEAVKFGRS-SRISCTCLYGG 267
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
R LE I+VATPGRL D +E + + L + LVLDEAD +LD+GF
Sbjct: 268 APKGPQLRDLERG-ADIVVATPGRLNDILEMRR---ISLRQISYLVLDEADRMLDMGFEP 323
Query: 554 DVENIVDCLPRRRQSLLFSATMPK 577
+ IV +P +RQ+L+++AT PK
Sbjct: 324 QIRKIVKEIPTKRQTLMYTATWPK 347
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 298 (110.0 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 76/200 (38%), Positives = 112/200 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S K + GY T +Q T+ L+GKD V A+TG+GK+ FLLP E
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
LKA S+ T LIL PTRELA Q L K G+ ++GG + +
Sbjct: 157 -LKARSAQTGARA-----LILSPTRELALQTMKFTKELGK-FTGLKTALILGGDKMEDQF 209
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +P I++ATPGRL+ H+ + ++++L ++ +V DEAD L ++GF + ++ I+
Sbjct: 210 AALHENP-DIIIATPGRLV-HVAVE--MNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIG 265
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q++LFSAT+PK LV
Sbjct: 266 RLPGGHQTVLFSATLPKLLV 285
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 298 (110.0 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 77/200 (38%), Positives = 111/200 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S K + GY T +Q T+ L+GKD V A+TG+GK+ FLLP E
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
LK S+ T LIL PTRELA Q L K G+ ++GG R +
Sbjct: 158 -LKTHSAQTGARA-----LILSPTRELALQTLKFTKELGK-FTGLKTALILGGDRMEDQF 210
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +P I++ATPGRL+ H+ + +S++L ++ +V DEAD L ++GF + ++ I+
Sbjct: 211 AALHENP-DIIIATPGRLV-HVAVE--MSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIA 266
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q++LFSAT+PK LV
Sbjct: 267 RLPGGHQTVLFSATLPKLLV 286
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 287 (106.1 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 67/201 (33%), Positives = 114/201 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +KA+T + Y + T +Q+ ++ L D + +A+TGTGK+ AF LP ++
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG--TRFKV 498
++ S P + L+L PTRELA Q+ ++ + + GG T+ ++
Sbjct: 67 LI-----SVQPCKPELRALVLTPTRELAQQVH-KSFCHYGQFTDVTIGIAYGGVSTKKQI 120
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ ++ D IL+ATPGRLLD + +S V L ++ LV DEAD +LD+GF+++++ I
Sbjct: 121 SELKVGVD---ILIATPGRLLDLLRTES---VSLSNIETLVFDEADRMLDMGFKEEIDQI 174
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
LP+ +Q+LLFSAT ++
Sbjct: 175 TQYLPKTKQTLLFSATFADDI 195
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 287 (106.1 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 67/201 (33%), Positives = 114/201 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +KA+T + Y + T +Q+ ++ L D + +A+TGTGK+ AF LP ++
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG--TRFKV 498
++ S P + L+L PTRELA Q+ ++ + + GG T+ ++
Sbjct: 67 LI-----SVQPCKPELRALVLTPTRELAQQVH-KSFCHYGQFTDVTIGIAYGGVSTKKQI 120
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ ++ D IL+ATPGRLLD + +S V L ++ LV DEAD +LD+GF+++++ I
Sbjct: 121 SELKVGVD---ILIATPGRLLDLLRTES---VSLSNIETLVFDEADRMLDMGFKEEIDQI 174
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
LP+ +Q+LLFSAT ++
Sbjct: 175 TQYLPKTKQTLLFSATFADDI 195
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 297 (109.6 bits), Expect = 4.5e-23, P = 4.5e-23
Identities = 85/234 (36%), Positives = 125/234 (53%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F IS TIK L A G + +Q T GKD + +A+TGTGK+ +F +P +E
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L P VL+L PTRELASQ++ + + K + V GGT +
Sbjct: 249 LLGELQDRKRGRAPQ--VLVLAPTRELASQVSRDFSDITKK---LAVACFYGGTPYGGQI 303
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+++ ILV TPGR+ DH++N G + L LK +VLDE D +LD+GF VE I+
Sbjct: 304 ERMKNG-IDILVGTPGRIKDHLQN--G-KLDLTKLKHVVLDEVDQMLDMGFADQVEEIL- 358
Query: 561 CLPRRR------QSLLFSATMPKEL--VLKR--EHTY--IDTVGLGSVETPVKV 602
C+ ++ Q+LLFSAT P + V K+ + TY +D +G + +T + V
Sbjct: 359 CVAYKKDSEDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITV 412
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 296 (109.3 bits), Expect = 4.6e-23, P = 4.6e-23
Identities = 74/205 (36%), Positives = 118/205 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 270 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAH 329
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ T+S +L P +I+ PTREL +QI EA + + + GGT+
Sbjct: 330 MMHDGITASRFKELQEP-ECIIVAPTRELVNQIYLEA-RKFSFGTCVRAVVIYGGTQLGH 387
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 388 SIRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQIKYLVLDEADRMLDMGFGPEMKKL 443
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+L+FSAT P+E+
Sbjct: 444 ISCPGMPSKEQRQTLMFSATFPEEI 468
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 298 (110.0 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 76/200 (38%), Positives = 112/200 (56%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S K + GY T +Q T+ L+GKD V A+TG+GK+ FLLP E
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
LKA S+ T LIL PTRELA Q L K G+ ++GG + +
Sbjct: 157 -LKARSAQTGARA-----LILSPTRELALQTMKFTKELGK-FTGLKTALILGGDKMEDQF 209
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +P I++ATPGRL+ H+ + ++++L ++ +V DEAD L ++GF + ++ I+
Sbjct: 210 AALHENP-DIIIATPGRLV-HVAVE--MNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIG 265
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q++LFSAT+PK LV
Sbjct: 266 RLPGGHQTVLFSATLPKLLV 285
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 288 (106.4 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 73/202 (36%), Positives = 112/202 (55%)
Query: 381 FDECG-ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
F E G I+PL + L Y Q T +Q + + G+D + A TG+GK+ F LP ++
Sbjct: 10 FTELGLITPLLAR-LAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 440 AVLKATSSSTTQLVPPIYV-LILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTRFK 497
+ + SS + L+L PTRELA Q+A + + +G I L + GG
Sbjct: 69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVN 128
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ L ILVATPGRLLD I + + ++L +K LVLDEAD +L LGF +++
Sbjct: 129 IQMLALRGG-VDILVATPGRLLDLISSNA---IKLDKVKTLVLDEADRMLSLGFTEELTA 184
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
++ P+++Q+LLFSAT P+++
Sbjct: 185 LLALTPKKKQTLLFSATFPEQV 206
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 296 (109.3 bits), Expect = 4.9e-23, P = 4.9e-23
Identities = 74/205 (36%), Positives = 118/205 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 288 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAH 347
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ T+S +L P +I+ PTREL +QI EA + + + GGT+
Sbjct: 348 MMHDGITASRFKELQEP-ECIIVAPTRELVNQIYLEA-RKFSFGTCVRAVVIYGGTQLGH 405
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 406 SIRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQIKYLVLDEADRMLDMGFGPEMKKL 461
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+L+FSAT P+E+
Sbjct: 462 ISCPGMPSKEQRQTLMFSATFPEEI 486
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 296 (109.3 bits), Expect = 4.9e-23, P = 4.9e-23
Identities = 74/205 (36%), Positives = 118/205 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E + + AGY ++T VQ+ ++ L G+D + A+TG+GK+ AFLLP +
Sbjct: 290 FEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAH 349
Query: 441 VLK--ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ T+S +L P +I+ PTREL +QI EA + + + GGT+
Sbjct: 350 MMHDGITASRFKELQEP-ECIIVAPTRELVNQIYLEA-RKFSFGTCVRAVVIYGGTQLGH 407
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R++ C IL ATPGRL+D I + + L +K LVLDEAD +LD+GF +++ +
Sbjct: 408 SIRQIVQG-CNILCATPGRLMDIIGKEK---IGLKQIKYLVLDEADRMLDMGFGPEMKKL 463
Query: 559 VDC--LPRR--RQSLLFSATMPKEL 579
+ C +P + RQ+L+FSAT P+E+
Sbjct: 464 ISCPGMPSKEQRQTLMFSATFPEEI 488
>POMBASE|SPBC691.04 [details] [associations]
symbol:SPBC691.04 "mitochondrial ATP-dependent RNA
helicase Mss116 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005759 "mitochondrial matrix" evidence=ISS]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC691.04 GO:GO:0005524
GO:GO:0006417 GO:GO:0008380 GO:GO:0005759 EMBL:CU329671
GO:GO:0006397 GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0032543
EMBL:AB004535 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_595596.1 ProteinModelPortal:O13622 STRING:O13622
EnsemblFungi:SPBC691.04.1 GeneID:2541136 KEGG:spo:SPBC691.04
OrthoDB:EOG437VPN NextBio:20802249 Uniprot:O13622
Length = 535
Score = 292 (107.8 bits), Expect = 5.9e-23, P = 5.9e-23
Identities = 78/202 (38%), Positives = 113/202 (55%)
Query: 381 FDECGISPLTIK-ALTAAGYIQMTRVQEATLSACLEGKD-AVVKAKTGTGKSIAFLLPAI 438
F E T K +L+ AG+ +MT VQ+ L+ ++ AVV+AKTGTGK++AFLL A
Sbjct: 39 FSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAF 98
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ VLK + I+ +IL PTRELA QI EA L GI V +GG
Sbjct: 99 KDVLKGKPRLNSS---KIHSVILSPTRELALQIFEEARKLTYG-TGIRVSYAIGGNSKMR 154
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
++ + +L+ATPGRL DH++N L + +LDEAD L+D+GF + + NI
Sbjct: 155 EENAIRRGNANLLIATPGRLEDHLQNPRILES--LSTDSFILDEADRLMDMGFAESILNI 212
Query: 559 VDCLPRRR-QSLLFSATMPKEL 579
+ + + + L FSATMP ++
Sbjct: 213 HEAVTTTKTRKLCFSATMPPKV 234
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 290 (107.1 bits), Expect = 6.2e-23, P = 6.2e-23
Identities = 78/216 (36%), Positives = 126/216 (58%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 115 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 165
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 224
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 225 RILDLI--KKGVA-KVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281
Query: 577 KELVLKREHTYIDT---VGLGSVETPVKVSKYNIYV 609
V K ++++ + L T V++Y YV
Sbjct: 282 LS-VQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV 316
>UNIPROTKB|J3QS69 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000578495
Uniprot:J3QS69
Length = 300
Score = 272 (100.8 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 67/203 (33%), Positives = 113/203 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA Q + + L ++ G +GGT +
Sbjct: 94 IELDLKATQA-----------LVLAPTRELAQQ---KVVMALGDYMGASCHACIGGTNVR 139
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 140 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 196
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 197 IFQKLNSNTQVVLLSATMPSDVL 219
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 295 (108.9 bits), Expect = 7.6e-23, P = 7.6e-23
Identities = 77/206 (37%), Positives = 118/206 (57%)
Query: 375 ILSQKRFDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT-GKSIA 432
+ + F + P I + T +T +Q+ ++ LEG+DA+V+++TG+ GK++A
Sbjct: 182 VFTSDAFQALDLHPHLISTINTVLKMSSLTSIQKQSIPVLLEGRDALVRSQTGSEGKTLA 241
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
+ +P +++ L+A + P Y LIL PTRELA Q LLK I L+G
Sbjct: 242 YCIPMVQS-LQAVKPKIQRGDGP-YALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMG 299
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G + K ++ RL IL++TPGRL+DHI KS ++R ++ L+LDEAD LLDLGF
Sbjct: 300 GEKRKSEKARLRKG-INILISTPGRLVDHI--KSTKNMRFCRIRWLILDEADRLLDLGFE 356
Query: 553 KDVE---NIVDCLPRRRQSLLFSATM 575
KD+ N V+ RQ++L SAT+
Sbjct: 357 KDIALILNAVNAERPERQNVLLSATL 382
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 289 (106.8 bits), Expect = 7.9e-23, P = 7.9e-23
Identities = 78/202 (38%), Positives = 112/202 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S ++ G Q T VQ + A LEG+D + AKTG+GK+ AF+LP
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLP---- 59
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ S I+ L+L PTRELA QIA E +L G+ +VGG
Sbjct: 60 ILQKLSEDPYG----IFCLVLTPTRELAYQIA-EQFRVLGKPLGLKDCIIVGGMDMVAQA 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG---FRKDVEN 557
L P +++ATPGRL DH+ + + +++ ++ LV+DEAD LL+ G F D+E
Sbjct: 115 LELSRKP-HVVIATPGRLADHLRSSNTFNMKK--IQFLVMDEADRLLEQGCTDFTTDLET 171
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I+ +P RRQ+LLFSAT+ L
Sbjct: 172 ILAAVPARRQTLLFSATLTDTL 193
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 292 (107.8 bits), Expect = 8.0e-23, P = 8.0e-23
Identities = 96/305 (31%), Positives = 146/305 (47%)
Query: 312 DVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKE---ISXXXXXXXXXXXX 368
D + S S+ K K+ KS + D EE+V+ KE +S
Sbjct: 43 DSEVESKSKSIKKSSKSEEKKSEKKSSSSKEDKEEEVKEETKEDIVLSPTEWRKKHNVLI 102
Query: 369 XXXXXPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTG 428
P QK F + P + + G+ T +Q + L G D V A TG+G
Sbjct: 103 EGKSQPNPFQK-FTDYEF-PRMFQHIFQ-GFTAPTVIQGQSWPIILGGNDLVGLAATGSG 159
Query: 429 KSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
K++AFLLPA+ ++ + P VL++ PTRELA QI ++ I L
Sbjct: 160 KTLAFLLPALLKIISLPKRPSYGATP--LVLVMAPTRELAQQIEEVCKTSIRG-TSIRQL 216
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
GG K+DQ R+ + I++ TPGRL D + K LS ++ LVLDEAD +LD
Sbjct: 217 CAYGGLG-KIDQSRILRNGVDIVIGTPGRLNDLLR-KHHLS----SVQYLVLDEADRMLD 270
Query: 549 LGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYID----TVGLGSVETPVKVSK 604
+GF +E+++D +P+ RQ+L+FSAT PKE+ L D TVG + + V++
Sbjct: 271 MGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQ 330
Query: 605 YNIYV 609
+ + +
Sbjct: 331 HIVNI 335
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 289 (106.8 bits), Expect = 8.2e-23, P = 8.2e-23
Identities = 78/216 (36%), Positives = 126/216 (58%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 115 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 165
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 224
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 225 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281
Query: 577 KELVLKREHTYIDT---VGLGSVETPVKVSKYNIYV 609
V K ++++ + L T V++Y YV
Sbjct: 282 LS-VQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV 316
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 289 (106.8 bits), Expect = 8.2e-23, P = 8.2e-23
Identities = 78/216 (36%), Positives = 126/216 (58%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 115 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 165
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 224
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 225 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281
Query: 577 KELVLKREHTYIDT---VGLGSVETPVKVSKYNIYV 609
V K ++++ + L T V++Y YV
Sbjct: 282 LS-VQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV 316
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 289 (106.8 bits), Expect = 8.2e-23, P = 8.2e-23
Identities = 78/216 (36%), Positives = 126/216 (58%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 115 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 165
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 224
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 225 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281
Query: 577 KELVLKREHTYIDT---VGLGSVETPVKVSKYNIYV 609
V K ++++ + L T V++Y YV
Sbjct: 282 LS-VQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV 316
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 289 (106.8 bits), Expect = 8.2e-23, P = 8.2e-23
Identities = 78/216 (36%), Positives = 126/216 (58%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 115 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 165
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 224
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 225 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281
Query: 577 KELVLKREHTYIDT---VGLGSVETPVKVSKYNIYV 609
V K ++++ + L T V++Y YV
Sbjct: 282 LS-VQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV 316
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 289 (106.8 bits), Expect = 8.2e-23, P = 8.2e-23
Identities = 78/216 (36%), Positives = 126/216 (58%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 115 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 165
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 166 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 224
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 225 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 281
Query: 577 KELVLKREHTYIDT---VGLGSVETPVKVSKYNIYV 609
V K ++++ + L T V++Y YV
Sbjct: 282 LS-VQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV 316
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 292 (107.8 bits), Expect = 9.4e-23, P = 9.4e-23
Identities = 77/196 (39%), Positives = 113/196 (57%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ CG + L A+GY T +Q + L G+D + A TG+GK+ AFLLP I
Sbjct: 206 FEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVI-- 263
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+A S S + P L+L PTRELA QI +A L+ + LVGG +
Sbjct: 264 -LRALSQSKS---PS--GLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQR 317
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL Q+++ATPGRLLD I+ +S V L +K++V+DEAD +L +GF++ V ++++
Sbjct: 318 HRLRQR-IQVIIATPGRLLDIIKQRS---VELGSIKIVVVDEADTMLKMGFQQQVLDVLE 373
Query: 561 CLPRRRQSLLFSATMP 576
LP Q++L SAT+P
Sbjct: 374 QLPHDCQTVLASATIP 389
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 290 (107.1 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 67/211 (31%), Positives = 115/211 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+ P I A G+ + +Q ++ L+G+D + A+TG+GK+ AF++P ++
Sbjct: 121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQK 180
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+A ++ L L PTRELA QIA + A+ + G+ LVGG
Sbjct: 181 LLEAPQG--------LFCLALAPTRELAYQIADQFNAI-GSTIGVKTCVLVGGIDSMSQS 231
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L P ++V +PGR+L H+E+ G ++R +K ++DEAD L F ++V NI+
Sbjct: 232 LALAKKP-HVVVGSPGRVLHHLEHTKGFNLR--SIKYFIMDEADRLFSADFEEEVNNILK 288
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTV 591
+P+ R + LFSATM ++ + + ++ V
Sbjct: 289 VIPKERNTYLFSATMTSKVAKLQRASLVNPV 319
Score = 42 (19.8 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 320 ASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEI 355
++L + +I K+V +K E++ EE+ E +++EI
Sbjct: 35 STLTEKPKQIVKKV-IKKQEEKEVKEEEEEEVKEEI 69
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 285 (105.4 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 72/202 (35%), Positives = 116/202 (57%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
L++ +F + ++P + L A G+ T +Q +L L+G D +A+TG GK+IAFL
Sbjct: 6 LTETKFADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLA 65
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
+L+ + + Q P LI+ PTRELA QI +A + K+ G+ + + GG
Sbjct: 66 ATFHHLLQKEAPTHNQ--PR--ALIMAPTRELAIQIHRDATEMAKS-TGLRLGVVYGGEG 120
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++ + LE+ IL+ T GRL+D++ K G+ L ++++VLDEAD + DLGF KD+
Sbjct: 121 YESQRLELEAG-VDILIGTCGRLIDYM--KQGI-YNLKNIEVIVLDEADRMFDLGFIKDI 176
Query: 556 ENIVDCLP--RRRQSLLFSATM 575
+ D +P R S+LFSAT+
Sbjct: 177 RYMFDKMPPATERLSMLFSATL 198
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 291 (107.5 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 80/238 (33%), Positives = 130/238 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
++E I+ + ++ GY + T VQ A++ L+ +D V A+TG+GK++AFL+P +
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNY 229
Query: 441 VLKATSS--STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+L + ++ LIL PTRELA QI EA K G VL ++GG ++
Sbjct: 230 ILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKL-GYQVLPIIGGHHYQD 288
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+++ ++VATPGRL+D IE K V L LV+DEAD ++D+GF KD+ +
Sbjct: 289 TINKIDQTGVHLIVATPGRLVDSIERKI---VDLSKCYCLVMDEADRMIDMGFEKDLNKV 345
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKREHTYIDTVGLG-SVETPVKVSKYNI---YVFV 611
+D LP +Q S+T+ + L++ T + T + +VE K KY I Y+++
Sbjct: 346 LDKLPTEKQ---LSSTIDGRIFHLEKRSTMMFTATISPTVEKLTK--KYLIDPGYLYI 398
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 291 (107.5 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 80/238 (33%), Positives = 130/238 (54%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
++E I+ + ++ GY + T VQ A++ L+ +D V A+TG+GK++AFL+P +
Sbjct: 170 WNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNY 229
Query: 441 VLKATSS--STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+L + ++ LIL PTRELA QI EA K G VL ++GG ++
Sbjct: 230 ILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKL-GYQVLPIIGGHHYQD 288
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+++ ++VATPGRL+D IE K V L LV+DEAD ++D+GF KD+ +
Sbjct: 289 TINKIDQTGVHLIVATPGRLVDSIERKI---VDLSKCYCLVMDEADRMIDMGFEKDLNKV 345
Query: 559 VDCLPRRRQSLLFSATMPKELV-LKREHTYIDTVGLG-SVETPVKVSKYNI---YVFV 611
+D LP +Q S+T+ + L++ T + T + +VE K KY I Y+++
Sbjct: 346 LDKLPTEKQ---LSSTIDGRIFHLEKRSTMMFTATISPTVEKLTK--KYLIDPGYLYI 398
>TIGR_CMR|SPO_3833 [details] [associations]
symbol:SPO_3833 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K05592 InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_169021.1
ProteinModelPortal:Q5LLT8 GeneID:3196362 KEGG:sil:SPO3833
PATRIC:23381169 HOGENOM:HOG000268794 OMA:MQHRSGR Uniprot:Q5LLT8
Length = 709
Score = 293 (108.2 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 83/211 (39%), Positives = 119/211 (56%)
Query: 387 SPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS 446
SPL + AL G+ +T VQ+A L D +V A+TG+GK++ F L AI L +
Sbjct: 30 SPL-LDALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGL-AIAPTLLGEA 87
Query: 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESD 506
+ P+ LI+ PTRELA Q++ E L G + T +GG + ++R LE
Sbjct: 88 ETLGPPAAPL-ALIVAPTRELALQVSRELTWLFAKAGG-RIATCIGGMDARTERRTLERG 145
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I+V TPGRL DHI + L L ++ +VLDEAD +LDLGFR+D+E ++ P R
Sbjct: 146 -AHIVVGTPGRLRDHI-TRGALD--LADIRAVVLDEADEMLDLGFREDLEFMLGEAPEDR 201
Query: 567 QSLLFSATM-PK--ELV--LKREHTYIDTVG 592
++LLFSAT+ P EL +R+ I T+G
Sbjct: 202 RTLLFSATVSPAIAELAKTYQRQAARISTLG 232
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 281 (104.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 72/190 (37%), Positives = 111/190 (58%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
TIK + + + T VQ L G D + +KTG+GK+++F+LPAIE +L S
Sbjct: 150 TIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQS- 208
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQ 509
P VL++ PTRELA+QI EA L+ + I + T+ GG + Q +L P +
Sbjct: 209 --YYPGPSVLVVAPTRELANQINQEAEQYLRLVN-IEIATIYGGAPRRSQQLQLSRRP-K 264
Query: 510 ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSL 569
I+V TPGR++D +E SG + L + LV+DEAD L+++GF + ++ I + + RQ L
Sbjct: 265 IVVGTPGRIIDFME--SG-DLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQVL 321
Query: 570 LFSATMPKEL 579
+SAT PK++
Sbjct: 322 YWSATWPKKV 331
Score = 53 (23.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 223 SGTDKRNFCRNDGSSTRDKAGFDT-GNKAK 251
+ + +F NDG +++ GFD GNK +
Sbjct: 58 NNNNNNSFMNNDGYNSKSNNGFDNFGNKKR 87
Score = 38 (18.4 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 256 NLGNNRENGDSKNMSEFMKKKCFVGK 281
N NN N ++ N + FM + K
Sbjct: 49 NYQNNYNNNNNNNNNSFMNNDGYNSK 74
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 294 (108.6 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 74/200 (37%), Positives = 111/200 (55%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G++ ++A+ G+ T +Q T+ LEG+D V A+TG+GK+ AF++P IE
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ ++S T+ LIL P RELA Q K D + + +VGG + +Q
Sbjct: 131 LKSTLANSNTR------ALILSPNRELALQTVKVVKDFSKGTD-LRSVAIVGGVSLE-EQ 182
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S I+VATPGR L H+ K + + L ++ +V DEAD L ++GF + I+
Sbjct: 183 FSLLSGKPDIVVATPGRFL-HL--KVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILH 239
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP RQ+LLFSAT+P+ LV
Sbjct: 240 ALPTSRQTLLFSATLPRTLV 259
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 294 (108.6 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 86/236 (36%), Positives = 125/236 (52%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F IS TIK L A G + +Q T GKD + +A+TGTGK+ +F +P IE
Sbjct: 260 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF--KV 498
+ P VL+L PTRELASQ++ + + K + V GGT + ++
Sbjct: 320 LQGELQDRKRGRAPQ--VLVLAPTRELASQVSRDFSDITKK---LAVACFYGGTPYGGQI 374
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
D+ R D ILV TPGR+ DH++N + L LK +VLDE D +LD+GF VE I
Sbjct: 375 DRMRNGID---ILVGTPGRIKDHLQNNK---LDLTKLKHVVLDEVDQMLDMGFADQVEEI 428
Query: 559 VDCLPRRR------QSLLFSATMPKEL--VLKR--EHTY--IDTVGLGSVETPVKV 602
+ C+ ++ Q+LLFSAT P + V K+ + TY +D +G + +T + V
Sbjct: 429 L-CVAYKKDSEDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITV 483
WARNING: HSPs involving 592 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 633 563 0.0010 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 842
No. of states in DFA: 615 (65 KB)
Total size of DFA: 299 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 42.95u 0.13s 43.08t Elapsed: 00:00:05
Total cpu time: 43.00u 0.13s 43.13t Elapsed: 00:00:06
Start: Fri May 10 06:51:37 2013 End: Fri May 10 06:51:43 2013
WARNINGS ISSUED: 2