BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006737
(633 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255537383|ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223549657|gb|EEF51145.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 771
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 356/619 (57%), Positives = 430/619 (69%), Gaps = 95/619 (15%)
Query: 2 SSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQ 61
S SV+L+RSK +++ L R+F R MGGGPRTFPGGLNKWQWKR+HEK+AKEKEK LLEQ
Sbjct: 4 SISVILRRSKTVSDHLQ-TRIFTRLMGGGPRTFPGGLNKWQWKRLHEKRAKEKEKSLLEQ 62
Query: 62 EKQLYQARVRSQIRTKLFDKADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDG 121
EKQLYQAR+RSQIR+KL + D + TN + SP +H+KALADRFMKEGAEDLWNEDDG
Sbjct: 63 EKQLYQARIRSQIRSKLAGEPDSNPNTNNYSATSPKDHIKALADRFMKEGAEDLWNEDDG 122
Query: 122 PVKSEQRPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSNVKTRNYSVLSE 181
P+ S Q P+S NQR G S++R G++N+ +++
Sbjct: 123 PLTS-QLPKS----NQRSGSIG---------SNQR-----PGSINTPIDLR--------- 154
Query: 182 SKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDK 241
+ ++ +R+V +F +Y + T R + N
Sbjct: 155 -----------------------KVMLEARSVHNFENLSY-NYTKTREYSVN-------- 182
Query: 242 AGFDTGNKAKPFARNLGNNRENGDSKNMSEFMKKKCFVGK--RRFKRNESSSSDDDSDID 299
F+ G K N S+ +KK+ + + RRF+RNESSS +DD D D
Sbjct: 183 -SFNLGQK----------------QSNESDNLKKRGLISQKVRRFRRNESSSGEDDGDYD 225
Query: 300 SEDVDEKVEGWRDVKKM-GSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEI-SK 357
++ EK R+V+++ GS A+LGKYD+KI+KRVPLK LE+E DFE IR E+ +K
Sbjct: 226 CDNEREK--KGRNVREIIGSRAALGKYDVKISKRVPLKELEEETDFE----FIRYELENK 279
Query: 358 NKLNGNG-EKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG 416
KL+ N EK E E+E IL Q+RFDECGISPLT+KALT AGY+QMTRVQEATLSACLEG
Sbjct: 280 MKLDRNDREKSEIDEQESILGQRRFDECGISPLTVKALTTAGYVQMTRVQEATLSACLEG 339
Query: 417 KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAI 476
KDA+VKAKTGTGKS AFLLPAIEAVLKA SS+ V PIYVLILCPTRELASQIAAEA
Sbjct: 340 KDALVKAKTGTGKSAAFLLPAIEAVLKAKSSNVKPRVSPIYVLILCPTRELASQIAAEAN 399
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
A+LK HDGI V TLVGGTRFK DQ+RLE +PCQI+VATPGRLLDHIENK GLSV LMGLK
Sbjct: 400 AMLKYHDGISVQTLVGGTRFKDDQKRLEMNPCQIIVATPGRLLDHIENKGGLSVHLMGLK 459
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDT 590
ML+LDEADHLLDLGFRKDVE I+DCLPR R SL+FSAT+PKE LVLKREH +IDT
Sbjct: 460 MLILDEADHLLDLGFRKDVEKIIDCLPRERHSLMFSATIPKEVRRISQLVLKREHAFIDT 519
Query: 591 VGLGSVETPVKVSKYNIYV 609
VGLGSVETP KV ++++ V
Sbjct: 520 VGLGSVETPSKVKQFSVVV 538
>gi|449452480|ref|XP_004143987.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 33-like
[Cucumis sativus]
gi|449495891|ref|XP_004159976.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 33-like
[Cucumis sativus]
Length = 813
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 351/668 (52%), Positives = 446/668 (66%), Gaps = 91/668 (13%)
Query: 1 MSSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLE 60
M+SSVLL R + +++L +F+R MGGGPRTFPGGLNKWQWKRMHEK+AKEKEKRLLE
Sbjct: 1 MTSSVLLDRHRTFSSLLC-KLIFSRSMGGGPRTFPGGLNKWQWKRMHEKRAKEKEKRLLE 59
Query: 61 QEKQLYQARVRSQIRTKLF-------DKADPDSETNQHKPMSPDEHVKALADRFMKEGAE 113
QEKQLYQAR+RS IR+KL + +DP + + P SP EH+ LA+RFMK+GA
Sbjct: 60 QEKQLYQARIRSDIRSKLVGAHETSKNNSDP---STSYSPKSPSEHINDLANRFMKQGAI 116
Query: 114 DLWNEDDGPVKSEQRPRSGAEANQRPRLAG--------APIDLRGLISDKRNSVNNSGNL 165
DLWNEDDGP+K+ PR A R+A +PID++ L+++ + S +
Sbjct: 117 DLWNEDDGPLKTPL-PRPAALNEGSRRIASNVRSGSIRSPIDVKRLLAENHDGFVGSHYM 175
Query: 166 N-SGSNVKTRNYSVLSESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSG 224
+G NVK R+YSV S
Sbjct: 176 GLNGDNVKGRSYSVQS-------------------------------------------- 191
Query: 225 TDKRNFCRNDGSSTRDKAGFDTG-NKAKPFARNLGNNRE-NGDSKNMSEFMKKKCFVGKR 282
+R+F RN+ SS+ D +++G + KPFA L + + N S+N++ + V +R
Sbjct: 192 --RRSFRRNESSSSDDDMDYNSGVDSIKPFANKLARSPDRNAKSRNLNGISNDRKAVPQR 249
Query: 283 RFK--RNESSSSDDDSDIDSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLED 340
+ K RN S SSDDDS+ + +VD+ + W+ +K GSSASLGK D+++ KRVPLK ++
Sbjct: 250 KMKFWRNGSLSSDDDSEEEFGNVDKDLRSWKGLK-TGSSASLGKCDVRMKKRVPLKPFDE 308
Query: 341 EHDFEEQVELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYI 400
E DF EQVEL+R E+SK E++ ++ EE I ++KRFDECGISPLT+KAL+ +GY+
Sbjct: 309 ESDFAEQVELLRYELSKK---SAAEEEGEKREEIIFTEKRFDECGISPLTVKALSFSGYV 365
Query: 401 QMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLI 460
+MTRVQEATLS CLEGKD +VK+KTG+GKS+AFLLPAIEAVLKA SS+ Q VPPI+VLI
Sbjct: 366 RMTRVQEATLSLCLEGKDTLVKSKTGSGKSVAFLLPAIEAVLKAACSSSNQRVPPIFVLI 425
Query: 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLD 520
LCPTRELA QIAAEA LLK HDGIGV TLVGGTRFK DQ+RLES P QI+VATPGRLLD
Sbjct: 426 LCPTRELACQIAAEANVLLKYHDGIGVQTLVGGTRFKDDQKRLESFPSQIIVATPGRLLD 485
Query: 521 HIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE-- 578
H+EN+SGLS+RLMGLKML+LDEADHLLDLGFRKD+E IVDCLPR+RQSLLFSAT+P+E
Sbjct: 486 HVENRSGLSLRLMGLKMLILDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATIPREVR 545
Query: 579 ----LVLKREHTYIDTVGLGSVETPVKV----------SKYNIYVFVLVLSIKIQAFYII 624
LVLKREH +++ VG+G VETPV+V S + I +L I Y +
Sbjct: 546 RISQLVLKREHVFVNNVGIGCVETPVQVKQSCLIAPHGSHFQIVCHLLKEHISCTPDYKV 605
Query: 625 CFVYTISM 632
T M
Sbjct: 606 IVFCTTGM 613
>gi|224074899|ref|XP_002304481.1| predicted protein [Populus trichocarpa]
gi|222841913|gb|EEE79460.1| predicted protein [Populus trichocarpa]
Length = 798
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 354/617 (57%), Positives = 424/617 (68%), Gaps = 79/617 (12%)
Query: 6 LLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQL 65
LL+RSK L+ L RV R MGGGP +FPGGLNKWQWKR+HEKKAKEKEKRLL+QEKQL
Sbjct: 5 LLRRSKFLSEQLR-TRVVIRLMGGGPLSFPGGLNKWQWKRLHEKKAKEKEKRLLDQEKQL 63
Query: 66 YQARVRSQIRTKLFDKADPD--SETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDG-- 121
+Q R+RSQIR+ L ++ P+ + N++ PMSP+EH+KALADRFMK+GAEDLWNE+DG
Sbjct: 64 FQDRMRSQIRSNLAGQSHPNLNPDPNKYNPMSPNEHLKALADRFMKDGAEDLWNENDGSL 123
Query: 122 -PVKSEQRPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSNVKTRNYSVLS 180
P EQ G NQ+P +P+DLR LIS+ +YS+L
Sbjct: 124 KPPSDEQTEFVGT--NQQPGSIHSPVDLRKLISEG-------------------HYSMLR 162
Query: 181 ESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRD 240
+ F + G++ P RR +R F N+ SS+ D
Sbjct: 163 DLGFE----------------SGGDSTKP------LARR-------QRKFRINESSSSDD 193
Query: 241 KA--GFDTGNKAKPFARNLGNNREN-GDSKNMSEFMKKKC--FVGKRRFKRNESSSSDDD 295
GF +K K F + N R + +N+S+FMK + V +RRF+RNES D
Sbjct: 194 DEDHGF-VNDKVKNFVGDSWNERGGVSNLRNVSDFMKNRGSETVKQRRFQRNESDDED-- 250
Query: 296 SDIDSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEI 355
+ R +GS A+LGKYDMK T+RVPLK L D++DF +VELIR E+
Sbjct: 251 ----EDLEGGGDRRGRSATDIGSRAALGKYDMKKTRRVPLKEL-DKNDFANEVELIRYEL 305
Query: 356 S-KNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL 414
K K GN + +K EE+ ILS+KRFDECG+SPLT+KAL AAGY+QMTRVQEATLS CL
Sbjct: 306 GRKKKFAGN--EGDKEEEDSILSEKRFDECGLSPLTVKALIAAGYVQMTRVQEATLSVCL 363
Query: 415 E-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473
E GKDA+VKAKTGTGKS AFLLPAIEAVLKATSS+ V PIY LILCPTRELASQIAA
Sbjct: 364 EAGKDAMVKAKTGTGKSAAFLLPAIEAVLKATSSNDKPQVSPIYALILCPTRELASQIAA 423
Query: 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533
EA A+LK HDGIGVLTLVGGTRFK DQRRLESDP QI+VATPGRLLDHIENK GLSV LM
Sbjct: 424 EANAMLKYHDGIGVLTLVGGTRFKDDQRRLESDPYQIIVATPGRLLDHIENKGGLSVHLM 483
Query: 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTY 587
GLK+L+LDEADHLLDLGFRKD+E I+DCLPR+RQSLLFSAT+PKE LVLKREH +
Sbjct: 484 GLKVLILDEADHLLDLGFRKDMEKILDCLPRQRQSLLFSATIPKEVRRISQLVLKREHAF 543
Query: 588 IDTVGLGSVETPVKVSK 604
I+TVG+G VETP K+ +
Sbjct: 544 INTVGVGCVETPAKIKQ 560
>gi|224053943|ref|XP_002298050.1| predicted protein [Populus trichocarpa]
gi|222845308|gb|EEE82855.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 350/613 (57%), Positives = 420/613 (68%), Gaps = 85/613 (13%)
Query: 6 LLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQL 65
L+ RSK L+ L R+F R MGGGPRTFPGGLNKWQWKR+HEKKAKEKEKRLL+QEKQL
Sbjct: 5 LIHRSKSLSEQLR-TRIFIRLMGGGPRTFPGGLNKWQWKRLHEKKAKEKEKRLLDQEKQL 63
Query: 66 YQARVRSQIRTKLFDKADPD--SETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPV 123
YQAR+RS IR+KL + DP+ + ++ PMSP EH+KALADRFMKEGAEDLWNE DGP+
Sbjct: 64 YQARMRSNIRSKLAGQPDPNLNPDPSKFNPMSPKEHIKALADRFMKEGAEDLWNEMDGPL 123
Query: 124 KSEQRPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSNVKTRNYSVLSESK 183
K A +++RP G +++R G++NS +++ ++SE +
Sbjct: 124 K--------APSDERPGFVG---------TNQR-----PGSINSPLDLR----KLMSEGR 157
Query: 184 FSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDKAG 243
R + + G + R F N+ SS+ D
Sbjct: 158 NVSRHREEN-------------------------------GFNYRKFRINESSSSDDDED 186
Query: 244 FDTGN-KAKPFARNLGNNREN-GDSKNMSEFMKKKCF--VGKRRFKRNESSSSDDDSDID 299
+ N K F R+ GN R +S+N+SEFMK K F +RRF RNES +D
Sbjct: 187 YGFVNDKVMNFGRDSGNERGAVSNSRNVSEFMKNKGFETQKQRRFGRNES--------VD 238
Query: 300 SEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEIS-KN 358
E E+ R K++GS +LGKYD+K T+RVP K LE ++DF +VELIR E+ K
Sbjct: 239 LEGGGER--RGRSAKEIGSRDALGKYDVKKTRRVPSKELE-KNDFANEVELIRYELGRKK 295
Query: 359 KLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE-GK 417
KL GN E +E+ ILS KRFDECG+SPLT+KALTAAGY+QMTRVQEATLS CLE GK
Sbjct: 296 KLAGNDGDNE--DEDSILSDKRFDECGLSPLTVKALTAAGYVQMTRVQEATLSVCLEAGK 353
Query: 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
DA+VKAKTG GKS AFLLPAIEAVLKA SS+ V PIYVLILCPTRELASQIAAEA A
Sbjct: 354 DAMVKAKTGKGKSAAFLLPAIEAVLKARSSNAKLRVSPIYVLILCPTRELASQIAAEANA 413
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537
+LK HDGI + TLVGGTRFK DQR LESDPCQILVATPGRLLDHIENKSGLS+ L GLKM
Sbjct: 414 ILKYHDGIVMQTLVGGTRFKDDQRCLESDPCQILVATPGRLLDHIENKSGLSMHLKGLKM 473
Query: 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTV 591
L+LDEADHLLDLGFRKDVE IVDCLPR+RQSLLFSAT+PKE LVLKREH +++TV
Sbjct: 474 LILDEADHLLDLGFRKDVEKIVDCLPRQRQSLLFSATIPKEVHRISQLVLKREHDFVNTV 533
Query: 592 GLGSVETPVKVSK 604
G+ +ETP K+ +
Sbjct: 534 GVSCMETPAKIKQ 546
>gi|15226161|ref|NP_178818.1| putative DEAD-box ATP-dependent RNA helicase 33 [Arabidopsis
thaliana]
gi|75318697|sp|O80792.1|RH33_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 33
gi|3327394|gb|AAC26676.1| putative RNA helicase [Arabidopsis thaliana]
gi|330251036|gb|AEC06130.1| putative DEAD-box ATP-dependent RNA helicase 33 [Arabidopsis
thaliana]
Length = 845
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 311/604 (51%), Positives = 407/604 (67%), Gaps = 73/604 (12%)
Query: 17 LWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRT 76
LW NR+F+R MGGGPRTFPGGLNKWQWKRMHEKKA+EKE +LL+QEKQLY+AR+R++IR
Sbjct: 67 LW-NRIFSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRA 125
Query: 77 KLFDKADPDSET----NQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKS-EQRPRS 131
K++ D +T H PMSP EH+K LADRFMK GA+DLWN++DGPVK +Q RS
Sbjct: 126 KMWGHPDSGEKTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGPVKKFDQGSRS 185
Query: 132 GAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSNVKTRNYSVLSESKFSDRSKSA 191
+++ + PID+R L+S +S+ L+S R +S +S K ++ S
Sbjct: 186 CSDS-----IDSTPIDVRRLVSATCDSMGKHRVLDSSR----RGFSSMSRFKRNESS--- 233
Query: 192 SLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAK 251
C++G+ V D DT
Sbjct: 234 ---------CDEGDDV--------------------------------DAKKLDT---LS 249
Query: 252 PFARNLGNNREN-GDSKNMSEFMKKKCFVGKRRFKRNESSSSDDDSDIDSEDVDEKVEGW 310
PF+ +E S ++ ++ K G+R+F++N+SS+ +D D E + K+ GW
Sbjct: 250 PFSPKFSGTKEKVKSSTSVVGVIRNKGLFGRRKFRKNDSSTEEDS---DEEGNEGKMIGW 306
Query: 311 RDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKR 370
D++K GSSASLG +D+K+TKRV ++E + +R+++SK + N ++++
Sbjct: 307 MDLRKTGSSASLGNHDIKLTKRVNRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQE 366
Query: 371 EEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
+ I S KRFDE ISPLT+KAL+A+G ++MTRVQ+ATLS CL+GKDA+VKAKTGTGKS
Sbjct: 367 PHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKS 426
Query: 431 IAFLLPAIEAVLKATSSST-TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
+AFLLPAIE VLKA +S V PI+VLILCPTRELASQIAAE ALLKNHDGIGV T
Sbjct: 427 MAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQT 486
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549
L+GGTRF++DQ+RLES+PCQIL+ATPGRLLDHIENKSGL+ RLM LK+ ++DEAD LLDL
Sbjct: 487 LIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDL 546
Query: 550 GFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVS 603
GF++DVE I+DCLPR+RQSLLFSAT+PKE LVLKR+H+YIDT+GLG VET KV
Sbjct: 547 GFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVK 606
Query: 604 KYNI 607
+ I
Sbjct: 607 QSCI 610
>gi|15221724|ref|NP_176514.1| putative DEAD-box ATP-dependent RNA helicase 48 [Arabidopsis
thaliana]
gi|75333533|sp|Q9C8S9.1|RH48_ARATH RecName: Full=Probable DEAD-box ATP-dependent RNA helicase 48
gi|12324351|gb|AAG52143.1|AC022355_4 putative RNA helicase; 42376-45543 [Arabidopsis thaliana]
gi|332195955|gb|AEE34076.1| putative DEAD-box ATP-dependent RNA helicase 48 [Arabidopsis
thaliana]
Length = 798
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 320/620 (51%), Positives = 415/620 (66%), Gaps = 70/620 (11%)
Query: 1 MSSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLE 60
M S +L +RS +T LW NR+ +R MGGGPRTFPGGLNKWQWKRMHEKKA+EKE +LL+
Sbjct: 1 MYSLILRERSGSITGSLW-NRISSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLD 59
Query: 61 QEKQLYQARVRSQIRTKLFDKADPDSET----NQHKPMSPDEHVKALADRFMKEGAEDLW 116
QEKQLY+AR+R++IR K++ D +T H PMSP EH+K LADRFMK GAED W
Sbjct: 60 QEKQLYEARIRTEIRAKMWGNPDSGEKTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFW 119
Query: 117 NEDDGPV-KSEQRPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSNVKTRN 175
NE+DGPV KS+Q RSG+++ + +PID+R L+S +S+ + S R
Sbjct: 120 NENDGPVKKSDQGSRSGSDSID--STSNSPIDVRRLVSATCDSMGKNRVFGSSR----RG 173
Query: 176 YSVLSESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDG 235
+S +S K ++ S C++G+ DF
Sbjct: 174 FSSMSRFKRNESS------------CDEGD---------DF------------------- 193
Query: 236 SSTRDKAGFDTGNKAKPFARNLGNNREN-GDSKNMSEFMKKKCFVGKRRFKRNESSSSDD 294
D DT PF+ +E S+++ ++ K G+R+F++N+SS+
Sbjct: 194 ----DAKKLDT---LSPFSPKFAGTKEKVKSSRSVVGVIRNKGLFGRRKFRKNDSSTE-- 244
Query: 295 DSDIDSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKE 354
D D E + K+ GW D++K GSSASLG +D+K+TKRV ++E + +R++
Sbjct: 245 -EDSDEEGDEGKMIGWMDMRKTGSSASLGNHDIKLTKRVNRNVTDEELYPPLDINTVRED 303
Query: 355 ISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACL 414
+SK K N ++++ + I S KRFDE ISPLT+KAL+A+G ++MTRVQ+ATLS CL
Sbjct: 304 LSKRKSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECL 363
Query: 415 EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLVPPIYVLILCPTRELASQIAA 473
+GKDA+VKAKTGTGKS+AFLLPAIE VLKA +S V PI+ LILCPTRELASQIAA
Sbjct: 364 DGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAA 423
Query: 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533
E ALLK HDGIGV TL+GGTRFK+DQ+RLES+PCQIL+ATPGRLLDHIENKSGL+ RLM
Sbjct: 424 EGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLM 483
Query: 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTY 587
LK+ ++DEAD LLDLGFR+DVE I+DCLPR+RQSLLFSAT+PKE LVLKR+H+Y
Sbjct: 484 ALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSY 543
Query: 588 IDTVGLGSVETPVKVSKYNI 607
IDT+GLG VET KV + I
Sbjct: 544 IDTIGLGCVETHDKVRQSCI 563
>gi|297837065|ref|XP_002886414.1| hypothetical protein ARALYDRAFT_315081 [Arabidopsis lyrata subsp.
lyrata]
gi|297332255|gb|EFH62673.1| hypothetical protein ARALYDRAFT_315081 [Arabidopsis lyrata subsp.
lyrata]
Length = 793
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 316/626 (50%), Positives = 416/626 (66%), Gaps = 72/626 (11%)
Query: 1 MSSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLE 60
M S +L +RS T LW +++F+R MGGGPRTFPGGLNKWQWKRMHEKKA+EKE +LL+
Sbjct: 1 MYSLILRERSGSFTGSLW-SQIFSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLD 59
Query: 61 QEKQLYQARVRSQIRTKLFDKADPDSET----NQHKPMSPDEHVKALADRFMKEGAEDLW 116
QEKQLY+AR+R++IR K++ D +T H PMSP EH+K LADRFMK GAEDLW
Sbjct: 60 QEKQLYEARIRTEIRAKMWGNPDSGEKTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDLW 119
Query: 117 NEDDGPVKSE-------QRPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGS 169
NE+DGPVK +R + +N + + ID+R L+S S+ NS +
Sbjct: 120 NENDGPVKESDDGSGLTRRDNGRSGSNSIVSSSNSSIDVRKLVSGTCYSMGNSRVFDRSR 179
Query: 170 NVKTRNYSVLSESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRN 229
R +S +S +F R++S+ C++G+ DF
Sbjct: 180 ----RGFSSMSRGRFK-RNESS---------CDEGD---------DF------------- 203
Query: 230 FCRNDGSSTRDKAGFDTGNKAKPFARNLGNNREN-GDSKNMSEFMKKKCFVGKRRFKRNE 288
D DT PF+ +E S+++ ++ K G+R+F++N+
Sbjct: 204 ----------DAKKLDT---LSPFSLKFAGTKEKVKSSRSVDGVIRNKGLFGRRKFRKND 250
Query: 289 SSSSDDDSDIDSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQV 348
SS+ D + E + K+ GW D++K GSSASLG +D+K+TKRV ++E +
Sbjct: 251 SSTE---EDSEEEGEEGKMIGWMDLRKTGSSASLGNHDIKLTKRVNRNVTDEELYPPLDI 307
Query: 349 ELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEA 408
+R+++SK K N K+ + + S+KRFDE ISPLT+KAL+A+G + MTRVQ+A
Sbjct: 308 NTVREDLSKRKSVDNVIKENREPHDSFYSRKRFDESSISPLTLKALSASGIVNMTRVQDA 367
Query: 409 TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS-STTQLVPPIYVLILCPTREL 467
TLS CL+GKDA+VKAKTGTGKS+AFLLPAIE VLKA ++ ++ VPPI+ LILCPTREL
Sbjct: 368 TLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNNGNSVHKVPPIFALILCPTREL 427
Query: 468 ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527
ASQI+AE +ALLK HDGIGV TL+GGTRFK+DQ+RLES+PCQIL+ATPGRLLDHIENKSG
Sbjct: 428 ASQISAEGMALLKYHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSG 487
Query: 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVL 581
L+ RLM LK+ ++DEAD LLDLGFR+DVE I+DCLPR+RQSLLFSAT+PKE LVL
Sbjct: 488 LTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVL 547
Query: 582 KREHTYIDTVGLGSVETPVKVSKYNI 607
KR+H+YIDT+GLG VET KV + I
Sbjct: 548 KRDHSYIDTIGLGCVETHDKVKQSCI 573
>gi|297837071|ref|XP_002886417.1| hypothetical protein ARALYDRAFT_893124 [Arabidopsis lyrata subsp.
lyrata]
gi|297332258|gb|EFH62676.1| hypothetical protein ARALYDRAFT_893124 [Arabidopsis lyrata subsp.
lyrata]
Length = 808
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 317/628 (50%), Positives = 409/628 (65%), Gaps = 76/628 (12%)
Query: 1 MSSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLE 60
M S +L +RS T LW +R+F+R MGGGPRTFPGGLNKWQWKRMHEKKA+EKE +LL+
Sbjct: 1 MYSLILRERSGSFTGSLW-SRIFSRNMGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLD 59
Query: 61 QEKQLYQARVRSQIRTKLFDKADPDSET----NQHKPMSPDEHVKALADRFMKEGAEDLW 116
QEKQLY+AR+R++IR K++ D +T H PMSP EH+K LADRFMK GAEDLW
Sbjct: 60 QEKQLYEARIRTEIRAKMWGNPDSGEKTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDLW 119
Query: 117 NE--------DDGPVKSEQ-RPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNS 167
NE DDG S + RSG+ + + + R L+S S+ NS +
Sbjct: 120 NENDGPMKESDDGSGLSRRDNGRSGSNSIDSSSNSSIDV--RKLVSGTCYSMGNSRVFDR 177
Query: 168 GSNVKTRNYSVLSESKFSDRSKSASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDK 227
R +S +S +F R++S+ C++G+ DF
Sbjct: 178 SR----RGFSSMSRGRFK-RNESS---------CDEGD---------DF----------- 203
Query: 228 RNFCRNDGSSTRDKAGFDTGNKAKPFARNLGNNREN-GDSKNMSEFMKKKCFVGKRRFKR 286
D DT PF+ +E SKN+ ++ K G+R+F++
Sbjct: 204 ------------DAKKLDT---LSPFSPKFAGTKEKVKSSKNVVGVIRNKGLFGRRKFRK 248
Query: 287 NESSSSDDDSDIDSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEE 346
N+SS+ +D E + K+ W D++KMGSSA+LG +D+K+TKRV ++E
Sbjct: 249 NDSSTEEDSE---EEGEEGKMNVWLDLRKMGSSAALGNHDIKLTKRVNRNVTDEELYPPL 305
Query: 347 QVELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQ 406
+ +R+++SK K N ++ + + I S KRFDE ISPLT+KAL+A+G ++MTRVQ
Sbjct: 306 DINTVREDLSKRKSVDNVIEENREPHDSIYSGKRFDESSISPLTLKALSASGIVKMTRVQ 365
Query: 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST-TQLVPPIYVLILCPTR 465
+ATLS CL+GKDA+VKAKTGTGKS+AFLLPAIE VLKA +S V PI+ LILCPTR
Sbjct: 366 DATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGNGVHKVAPIFALILCPTR 425
Query: 466 ELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENK 525
ELASQIAAE ALLK HDGIGV TL+GGTRFK+DQ+RLES+PCQIL+ATPGRLLDHIENK
Sbjct: 426 ELASQIAAEGKALLKYHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENK 485
Query: 526 SGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------L 579
SGL+ RLM LK+ ++DEAD LLDLGFR+DVE I+DCLPR+RQSLLFSAT+PKE L
Sbjct: 486 SGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQL 545
Query: 580 VLKREHTYIDTVGLGSVETPVKVSKYNI 607
VLKR+H+YIDT+GLG VET KV + I
Sbjct: 546 VLKRDHSYIDTIGLGCVETHDKVKQSCI 573
>gi|413939551|gb|AFW74102.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 818
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 295/609 (48%), Positives = 386/609 (63%), Gaps = 50/609 (8%)
Query: 27 MGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDS 86
MGGGPRTFPGGL+KWQ+KRMHEK A++K++ LL EKQLY AR+RS+IR A ++
Sbjct: 1 MGGGPRTFPGGLSKWQYKRMHEKLARQKQRGLLRHEKQLYLARLRSEIRASRLPGAAAEA 60
Query: 87 ETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQRP----RSGAEANQRPRLA 142
P S H++ALADRF + GAEDLWNEDDGP++ +RP SG Q+ +
Sbjct: 61 PPGGEGPTSSRAHIRALADRFRRPGAEDLWNEDDGPLRRVKRPPTGIASGVRHQQQQLDS 120
Query: 143 GAPIDLRGLIS-DKRNSVNNSGNLNSGSNVKTRNYSVLSESKFSDRSKSASLI--FMPNL 199
G P RG S + S++ L+ G + + F+ R + +++ + P
Sbjct: 121 GKP---RGGPSWEDLTSLDQPRPLDRGKGP--------TSAAFNPRREYLTVVAPWCPRW 169
Query: 200 ECNDGETVIPSRN--VMDFVRRAYFSGTDKRNFCRN----DGSSTRDK--AGFDTGN--- 248
+ V P ++ VM + D R + DG+ +D A F+
Sbjct: 170 DPRPLGFVAPKKSYPVMTRCSVSCQPCVDLRPLVASGLTEDGNGRKDTPLAQFNQERFYS 229
Query: 249 -KAKPFARNLGNNRENGDSKNMSEFMKKKCFVGKRRFKRNESSSSDDDSDIDSEDVDEKV 307
A+ F R + + D K S K RF + +SS++DS+ID E D
Sbjct: 230 VAARRFGRKWRPDSSDQDDKGTSAPKKNL------RFGKKFGASSEEDSEID-ESGDTGA 282
Query: 308 EGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDE-HDFEEQVELIRKEISKNKLNGNGEK 366
+++ SSA+L D+K +RV LKS E+E +D +++ +R+EI ++ G +
Sbjct: 283 -----IRRRWSSAALRNCDVKKERRV-LKSYEEESNDLAGRIQELREEIRNREVLGTERR 336
Query: 367 KEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTG 426
+ + E +L+ KRFD+CG+S LT+KALT AGY+Q T VQEA L CLEGKD +VKAKTG
Sbjct: 337 RYESRGESLLTSKRFDQCGVSALTVKALTDAGYVQTTVVQEAALPICLEGKDVLVKAKTG 396
Query: 427 TGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486
TGKS AFLLPAIE+VL A S+T Q V PI+ L+LCPTRELA Q+ AEA LLK H+GIG
Sbjct: 397 TGKSAAFLLPAIESVLNAMKSNTNQRVSPIFALVLCPTRELAIQLTAEANVLLKYHEGIG 456
Query: 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
V +L+GGTRFK+DQRRLESDPCQILVATPGRLLDHIENKS SVRLM LK+LVLDEADHL
Sbjct: 457 VQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMRLKLLVLDEADHL 516
Query: 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPV 600
LDLGFRKD+E IVD LPR+RQ+LLFSAT+PKE LVLKR+H ++DTVGLG+VETP
Sbjct: 517 LDLGFRKDIEKIVDTLPRQRQTLLFSATIPKEVRRVSQLVLKRDHVFVDTVGLGAVETPT 576
Query: 601 KVSKYNIYV 609
KV + + V
Sbjct: 577 KVQQSCLVV 585
>gi|242067048|ref|XP_002454813.1| hypothetical protein SORBIDRAFT_04g037930 [Sorghum bicolor]
gi|241934644|gb|EES07789.1| hypothetical protein SORBIDRAFT_04g037930 [Sorghum bicolor]
Length = 823
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 294/618 (47%), Positives = 376/618 (60%), Gaps = 63/618 (10%)
Query: 27 MGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDS 86
MGGGPRTFPGGL+KWQ++RMHEK A++K++ LL EKQLY AR+RS+IR A ++
Sbjct: 1 MGGGPRTFPGGLSKWQYRRMHEKLARQKQRGLLRHEKQLYLARLRSEIRASRLPGAAAEA 60
Query: 87 ETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQRPRSGAEANQRPRLAGAPI 146
P S H++ALADRF + GAEDLWNEDDGP++ +RP +G + R
Sbjct: 61 PPQGEGPTSSRAHIRALADRFRRPGAEDLWNEDDGPLRRAKRPPTGIASGVR-------- 112
Query: 147 DLRGLISDKRNSVNNSGNLNSGSNVKTRNYSVLSESKFS----DRSKSASL-IFMPNLEC 201
+ +SG G + + L + + DR K +L F P E
Sbjct: 113 --------HHHQQLDSGKPRGGPSWEDWEDLALGQPRPRKEPLDRGKGPTLAAFNPRREY 164
Query: 202 NDGETVI----PSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFARNL 257
TV+ P N F G KR++ S + D +
Sbjct: 165 L---TVVAPWCPRWNPGPL----RFVGP-KRSYSVMTPCSVSWQPCVDLRPLVARGLTEV 216
Query: 258 GNNRENGDSKNMSEFMKKKCF-VGKRRFKRNESSSSDDDSDID---------------SE 301
GN R + F +++ + V RRF R S DD D S
Sbjct: 217 GNGRREAP---LPLFNQERLYSVAARRFGRKWRPDSSDDDDEGTSAPKRNLRFGKFGASS 273
Query: 302 DVDEKVEGWRD---VKKMGSSASLGKYDMKITKRVPLKSLEDE-HDFEEQVELIRKEISK 357
+ D +++ D +++ SSA+L DMK +RV LK E+E +D ++ +R+EI
Sbjct: 274 EEDSEIDESGDTGAIRRRWSSAALRNCDMKKERRV-LKYYEEESNDLAGRIRELREEIRN 332
Query: 358 NKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK 417
++ G ++ + E +L+ KRFDECG+SPLT+KALT AGY+ T VQEA L CLEGK
Sbjct: 333 REVLGTERRRYESRGESLLTSKRFDECGVSPLTVKALTDAGYVHTTVVQEAALPICLEGK 392
Query: 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
D +VKAKTGTGKS AFLLPAIE+VL A ++T Q V PI+VL+LCPTRELA Q+AAEA
Sbjct: 393 DVLVKAKTGTGKSAAFLLPAIESVLNAMKTNTNQRVSPIFVLVLCPTRELAIQLAAEANV 452
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537
LLK H+GIGV TL+GGTRFK+DQRRLESDPCQILVATPGRLLDHIENKS SVRLM LK+
Sbjct: 453 LLKYHEGIGVQTLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMRLKL 512
Query: 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTV 591
LVLDEADHLLDLGFRKD+E IVD LPR+RQ+LLFSAT+PKE LVLKR+H ++DTV
Sbjct: 513 LVLDEADHLLDLGFRKDIEKIVDSLPRQRQTLLFSATIPKEVRRVSQLVLKRDHVFVDTV 572
Query: 592 GLGSVETPVKVSKYNIYV 609
GLG+VETP KV + + V
Sbjct: 573 GLGAVETPTKVQQSCLVV 590
>gi|357137715|ref|XP_003570445.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 48-like
[Brachypodium distachyon]
Length = 843
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 294/628 (46%), Positives = 383/628 (60%), Gaps = 63/628 (10%)
Query: 27 MGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLF------D 80
MGGGPRTFPGGL+KWQ+KRMHEK A++K++ LL EKQLY AR+RS+IR
Sbjct: 1 MGGGPRTFPGGLSKWQYKRMHEKLARQKQRGLLRHEKQLYLARLRSEIRASHLPGAADAA 60
Query: 81 KADPDSETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVK-SEQRPRSGAEANQRP 139
A PD P S H++ALADRF++ GAEDLWNEDDGP++ ++ PR+ A P
Sbjct: 61 AASPDLGGG---PTSSRAHIRALADRFLRPGAEDLWNEDDGPLRRAKTLPRT-QPARSLP 116
Query: 140 RLAGAPI-DLRGLISDKRNSVNNSGNLNSGSNVKTRNYSVL-------SESKFS--DRSK 189
+GA I D + + S K+ S SG+ + V SE + + + +
Sbjct: 117 --SGARIVDWKQMDSGKKPSQGGSGDWKDWEELHVEQPRVRRGTGVGGSEPRLAAFNTRR 174
Query: 190 SASLIFMPNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNK 249
+ + + G R F F G + + S R+ +
Sbjct: 175 EYGTVAPWWWQWSSGSGTPSQRKEASF----GFFGLKRCYSVMHPCSPHRE-----SSPT 225
Query: 250 AKPFARNLGNNRENGDSKNMSEFMKKKCF-VGKRRFK---RNESSSSDDDS--------- 296
P + NG +++ F +++ + V RRF R +SS DDD
Sbjct: 226 LMPLGASQSTGARNGKETSLAMFNQERLYSVAARRFGQKWRPDSSDEDDDGISTAKRDLR 285
Query: 297 --------DIDSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDE-HDFEEQ 347
+ +SED DE E +++ S+A+L DMK +R LKS E+E +D +
Sbjct: 286 FGKFGAPREEESED-DEPREA-STIRRKWSTAALRNCDMKKDRRA-LKSYEEESNDLTGR 342
Query: 348 VELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQE 407
++ +R+EI ++ G ++ + E + + KRFDECGISPLT+KALT AGY+Q T VQE
Sbjct: 343 IQELREEIRNREVLGAERRRYESRGESLFTSKRFDECGISPLTVKALTDAGYVQTTVVQE 402
Query: 408 ATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467
A L CLEGKD +VKAKTGTGKS AFLLPAIE+VL A S T V PI+ L+LCPTREL
Sbjct: 403 AALPICLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFALVLCPTREL 462
Query: 468 ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527
A Q+ AEA LLKNH G+GV +L+GGTRFK+DQRRLESDPCQILVATPGRLLDHIEN+S
Sbjct: 463 AVQVTAEANVLLKNHQGVGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENRSS 522
Query: 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVL 581
SVRLMGLK+LVLDEADHLLDLGFRKD+E I D LPR+RQ+LLFSAT+PKE LVL
Sbjct: 523 FSVRLMGLKLLVLDEADHLLDLGFRKDIEKIADSLPRQRQTLLFSATVPKEVRRVSQLVL 582
Query: 582 KREHTYIDTVGLGSVETPVKVSKYNIYV 609
R+H ++DTVGLG+VETP+KV + + V
Sbjct: 583 NRDHVFVDTVGLGAVETPIKVQQQYLVV 610
>gi|326531756|dbj|BAJ97882.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 843
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 287/624 (45%), Positives = 375/624 (60%), Gaps = 55/624 (8%)
Query: 27 MGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDS 86
MGGGPRTF GGL+KWQ KRMHEK A+ KE+ LL EKQLY AR+RS+IR A P S
Sbjct: 1 MGGGPRTFAGGLSKWQHKRMHEKLARGKERGLLRHEKQLYLARLRSEIRASHLPGA-PAS 59
Query: 87 ETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQRPRSGAEANQRPRLAGAPI 146
+ P S H++ALADRF++ GAEDLWN+DDGP++ + P A + +
Sbjct: 60 PADHAGPTSSRAHIRALADRFLRPGAEDLWNDDDGPLRRARLPSQQKNAARTLPSGARMV 119
Query: 147 DLRGLISDKRNSVNNSGN-------LNSGSNVKTR---NYSVLSESKFSDRSKSASLIFM 196
D + + S +R G L+SG R N + FS R ++
Sbjct: 120 DWKRVESGERPKPPRGGGDWKDWEELDSGEPRAGRGAGNEQPRLPAAFSQRRGYGTVAPW 179
Query: 197 PNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFA-R 255
+ + G R F +F KR + S R ++G P R
Sbjct: 180 -WWQWSPGSGTPSQRKEASF---GFFG--LKRCYSAMPPLSPRQ----ESGAALMPLGVR 229
Query: 256 NLGNNRENGDSKNMSE---FMKKKCFVGK--RRF-KRNESSSSDDDSDI----------- 298
L + G +K + +++ + G RRF ++ SSD+D ++
Sbjct: 230 QL--SEAGGGTKGTPPALFYAQERLYSGAAPRRFGQKWRPDSSDEDEEVMPPAKRDLRLA 287
Query: 299 ------DSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHD-FEEQVELI 351
+ E D++V +++ SSA+L DMK +R PLKS E+E D +++ +
Sbjct: 288 KFVASREDESEDDEVGETSAIRRKWSSAALRNCDMKRDRR-PLKSYEEESDDITGRIQEL 346
Query: 352 RKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLS 411
R+EI ++ G ++ + E + + KRFDECGISPLT+KALT AGYI T VQEA L
Sbjct: 347 REEIRNREVLGAERRRYESRGESVFTNKRFDECGISPLTVKALTDAGYIHTTVVQEAALP 406
Query: 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471
CLEGKD +VKAKTGTGKS+AFLLPAIE+VL A S T V PI+ L+LCPTRELA Q+
Sbjct: 407 ICLEGKDVLVKAKTGTGKSVAFLLPAIESVLNAMKSHTNHRVSPIFALVLCPTRELAVQV 466
Query: 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVR 531
AEA L+K H G+GV +L+GGTRFK+DQRRLESDPCQILVATPGRLLDHIEN+S SVR
Sbjct: 467 TAEANVLVKYHHGVGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENRSSFSVR 526
Query: 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREH 585
LMGLK+LVLDEADHLLDLGFRKD+E I D LPR+RQ+LLFSAT+PKE +VL ++H
Sbjct: 527 LMGLKLLVLDEADHLLDLGFRKDIEKIADSLPRQRQTLLFSATIPKEVRRVSQMVLNKDH 586
Query: 586 TYIDTVGLGSVETPVKVSKYNIYV 609
++DTVGLG+VETP KV + + V
Sbjct: 587 VFVDTVGLGAVETPTKVQQQYLVV 610
>gi|326527675|dbj|BAK08112.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 843
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 286/624 (45%), Positives = 374/624 (59%), Gaps = 55/624 (8%)
Query: 27 MGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDS 86
MGGGPRTF GGL+KWQ KRMHEK A+ KE+ LL EKQLY AR+RS+IR A P S
Sbjct: 1 MGGGPRTFAGGLSKWQHKRMHEKLARGKERGLLRHEKQLYLARLRSEIRASHLPGA-PAS 59
Query: 87 ETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQRPRSGAEANQRPRLAGAPI 146
+ P S H++ALADRF++ GAEDLWN+DDGP++ + P A + +
Sbjct: 60 PADHAGPTSSRAHIRALADRFLRPGAEDLWNDDDGPLRRARLPSQQKNAARTLPSGARMV 119
Query: 147 DLRGLISDKRNSVNNSGN-------LNSGSNVKTR---NYSVLSESKFSDRSKSASLIFM 196
D + + S +R G L+SG R N + FS R ++
Sbjct: 120 DWKRVESGERPKPPRGGGDWKDWEELDSGEPRAGRGAGNEQPRLPAAFSQRRGYGTVAPW 179
Query: 197 PNLECNDGETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDKAGFDTGNKAKPFA-R 255
+ + G R F +F KR + S R ++G P R
Sbjct: 180 -WWQWSPGSGTPSQRKEASF---GFFG--LKRCYSAMPPLSPRQ----ESGAALMPLGVR 229
Query: 256 NLGNNRENGDSKNMSE---FMKKKCFVGK--RRF-KRNESSSSDDDSDI----------- 298
L + G +K + +++ + G RRF ++ SSD+D ++
Sbjct: 230 QL--SEAGGGTKGTPPALFYAQERLYSGAAPRRFGQKWRPDSSDEDEEVMPPAKRDLRLA 287
Query: 299 ------DSEDVDEKVEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHD-FEEQVELI 351
+ E D++V +++ SSA+L DMK +R PLKS E+E D +++ +
Sbjct: 288 KFVASREDESEDDEVGETSAIRRKWSSAALRNCDMKRDRR-PLKSYEEESDDITGRIQEL 346
Query: 352 RKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLS 411
R+EI ++ G ++ + E + + KRFDECGISPLT+KALT AGYI T VQEA L
Sbjct: 347 REEIRNREVLGAERRRYESRGESVFTNKRFDECGISPLTVKALTDAGYIHTTVVQEAALP 406
Query: 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQI 471
CLEGKD +VKAKTGTGKS+AFLLPAIE+VL A S T V PI+ L+LCPTREL Q+
Sbjct: 407 ICLEGKDVLVKAKTGTGKSVAFLLPAIESVLNAMKSHTNHRVSPIFALVLCPTRELVVQV 466
Query: 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVR 531
AEA L+K H G+GV +L+GGTRFK+DQRRLESDPCQILVATPGRLLDHIEN+S SVR
Sbjct: 467 TAEANVLVKYHHGVGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENRSSFSVR 526
Query: 532 LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREH 585
LMGLK+LVLDEADHLLDLGFRKD+E I D LPR+RQ+LLFSAT+PKE +VL ++H
Sbjct: 527 LMGLKLLVLDEADHLLDLGFRKDIEKIADSLPRQRQTLLFSATIPKEVRRVSQMVLNKDH 586
Query: 586 TYIDTVGLGSVETPVKVSKYNIYV 609
++DTVGLG+VETP KV + + V
Sbjct: 587 VFVDTVGLGAVETPTKVQQQYLVV 610
>gi|115449921|ref|NP_001048584.1| Os02g0826100 [Oryza sativa Japonica Group]
gi|75324058|sp|Q6K7R9.1|RH48_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 48
gi|48716436|dbj|BAD23043.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
gi|113538115|dbj|BAF10498.1| Os02g0826100 [Oryza sativa Japonica Group]
gi|218197440|gb|EEC79867.1| hypothetical protein OsI_21363 [Oryza sativa Indica Group]
gi|222623956|gb|EEE58088.1| hypothetical protein OsJ_08955 [Oryza sativa Japonica Group]
Length = 811
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 289/605 (47%), Positives = 365/605 (60%), Gaps = 59/605 (9%)
Query: 27 MGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKLFDKADPDS 86
MGGGPRTFPGGL+KWQ KRMHEK A+ KE+ LL EKQLY AR+RS+IR A
Sbjct: 1 MGGGPRTFPGGLSKWQHKRMHEKLARHKERGLLRHEKQLYLARLRSEIRASRLPAAGASP 60
Query: 87 ETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQRPRS-------GAEANQRP 139
+ P S H++ALADRF+ GAEDLWNEDDGP+ RPR G R
Sbjct: 61 PDDGDGPTSSRAHIRALADRFLLPGAEDLWNEDDGPIHRADRPRPPRRIVSVGGNGGDRR 120
Query: 140 RLAGAPIDL-RGLISDKRNSVNNSGNLNSGSNVKTRNYSVLSESKFSDRSKSASLIF--- 195
+L +L RG + + N + + + + S + R+K AS F
Sbjct: 121 KLDSTKQELPRGGKEPRLAAFNPRRDFQTAAPWWWQWSSSSA---IPSRTKEASFCFFGP 177
Query: 196 ------MPNLECND---GETVIPSRNVMDFVRRAYFSGTDKRNFCRNDGSSTRDKAGFDT 246
MP + + G +++P + R S + + +G A
Sbjct: 178 KRSYSVMPLFQAHQESSGTSMVP------LIARGLASA--RIAPSQLNGERFYSFAAGRF 229
Query: 247 GNKAKPFARNLGNNRENGDSKNMSEFMKKKCFVGKRRFKRNESSSSDDDSDIDSEDVDEK 306
G K +P + + + + K+M RF R +SS+++S D +
Sbjct: 230 GRKLRPDSSDEDDEDISTAKKDM-------------RFARF-GASSEEESGYD------E 269
Query: 307 VEGWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEH-DFEEQVELIRKEISKNKLNGNGE 365
+E ++K SSA+L DMK +R LKS E+E+ D +R+EI ++ G
Sbjct: 270 LEARSAIRKKWSSAALRNCDMKKERRA-LKSYEEENNDLAGSFRELREEIKNREVLGAER 328
Query: 366 KKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKT 425
++ + E + + KRF+ECGISPLT+KALT AGY+Q T VQE L CLEGKD +VKAKT
Sbjct: 329 RRYESRGESLFTNKRFEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKT 388
Query: 426 GTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485
GTGKS AFLLPAIE+VL A S T V PI+ LILCPTRELA Q+ AEA LLK H GI
Sbjct: 389 GTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGI 448
Query: 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545
GV +L+GGTRFK+DQRRLESDPCQILVATPGRLLDHIENKS SVRLMGLK+LVLDEADH
Sbjct: 449 GVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADH 508
Query: 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETP 599
LLDLGFR D+E IVD LPR+RQ+LLFSAT+PKE LVLKR+H ++DTVGLG+VETP
Sbjct: 509 LLDLGFRTDIEKIVDSLPRQRQTLLFSATIPKEVRRVSQLVLKRDHVFVDTVGLGAVETP 568
Query: 600 VKVSK 604
KV +
Sbjct: 569 TKVEQ 573
>gi|359474023|ref|XP_002276972.2| PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like
[Vitis vinifera]
gi|297742558|emb|CBI34707.3| unnamed protein product [Vitis vinifera]
Length = 754
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/361 (67%), Positives = 290/361 (80%), Gaps = 19/361 (5%)
Query: 258 GNNRENGDSKNMSEFMKKKCFVG--KRRFKRNESSSSDDDS------DIDSEDVDEKVE- 308
G + G+++ +S +K + + +RRF+RNESSSSDD S + VD+ VE
Sbjct: 157 GRSLGPGNARIVSRALKPRHYSVQVRRRFRRNESSSSDDGSDVSSGDEFSGRLVDDDVEL 216
Query: 309 -GWRDVKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKK 367
G R+V+KM SSA+LGKYD+KI +RV KS+++ DF EQ+ELIR E+S+ L E++
Sbjct: 217 RGRRNVQKMMSSAALGKYDVKIKRRVMPKSIDEGDDFSEQIELIRHELSRKNL---AEEE 273
Query: 368 EKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT 427
EK +EE ILSQKRFDECG+SPLT+KAL++AGY+QMTRVQEATL CLEGKDA+VKAKTGT
Sbjct: 274 EKGDEESILSQKRFDECGVSPLTVKALSSAGYVQMTRVQEATLDVCLEGKDALVKAKTGT 333
Query: 428 GKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487
GKS AFLLPAIEAVLKATSS+ Q VPPI VLILCPTRE+ASQIAAEA +LK HDGIGV
Sbjct: 334 GKSAAFLLPAIEAVLKATSSNRIQRVPPILVLILCPTREIASQIAAEANVMLKYHDGIGV 393
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
TL+GGTRFK DQ+RLESDPCQI+VATPGRLLDHIENK SVRLMGLKMLVLDEADHLL
Sbjct: 394 QTLIGGTRFKFDQKRLESDPCQIIVATPGRLLDHIENKGSFSVRLMGLKMLVLDEADHLL 453
Query: 548 DLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVK 601
DLGFRKD+E IVDCLPR+RQSLLFSAT+PKE LVLK+EH ++DTVGLG+ ET K
Sbjct: 454 DLGFRKDMEKIVDCLPRQRQSLLFSATVPKEVRRISQLVLKKEHAFVDTVGLGNAETHAK 513
Query: 602 V 602
V
Sbjct: 514 V 514
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/192 (55%), Positives = 130/192 (67%), Gaps = 15/192 (7%)
Query: 1 MSSSVLLQRSKPLTNILWFNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLE 60
M SS+L + S + +L FARPMGGGPRTFPGG+NKWQWKR+HEKKA+EKEKRLL+
Sbjct: 1 MYSSILRRHSSSSSKLLC-TFFFARPMGGGPRTFPGGINKWQWKRLHEKKAREKEKRLLD 59
Query: 61 QEKQLYQARVRSQIRTKLFDKA----DPDSETNQHKPMSPDEHVKALADRFMKEGAEDLW 116
EKQLY+AR+RSQIR KL K PDS+ H PMSP +H+KALADRFMKEGAEDLW
Sbjct: 60 HEKQLYEARIRSQIRAKLAGKPVSEFSPDSDHPNHNPMSPQDHIKALADRFMKEGAEDLW 119
Query: 117 NEDDGPVKS----EQRPRSGAEANQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSNVK 172
N+DDGPVKS +RP +G P P+DLR L S R+ + + S + +K
Sbjct: 120 NDDDGPVKSPPLLPRRPSNGLSRQIEP-----PVDLRKLTSHGRSLGPGNARIVSRA-LK 173
Query: 173 TRNYSVLSESKF 184
R+YSV +F
Sbjct: 174 PRHYSVQVRRRF 185
>gi|356527618|ref|XP_003532405.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 33-like
[Glycine max]
Length = 707
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/300 (71%), Positives = 249/300 (83%), Gaps = 16/300 (5%)
Query: 314 KKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEE 373
KK GSSASLG+YD+K +RV K+ +VE IR +++K KL+ E++ + +++
Sbjct: 177 KKRGSSASLGEYDVKRERRVVPKT-------SPEVEFIRYQLNKRKLSQIEEQQSQEQQQ 229
Query: 374 P---ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
ILS RFDECGISPLT+KAL++AGY+QMTR+QEA+L CLEG DA+VKAKTGTGKS
Sbjct: 230 SNESILSNTRFDECGISPLTVKALSSAGYVQMTRIQEASLPICLEGMDALVKAKTGTGKS 289
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
+AFLLPAIE VLKA SS+T+Q VPPIYVLILCPTRELASQIAA A LLK H+ IGV TL
Sbjct: 290 VAFLLPAIETVLKAMSSNTSQRVPPIYVLILCPTRELASQIAAVAKVLLKYHETIGVQTL 349
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
VGG RFKVDQ+RLESDPCQILVATPGRLLDHIENKSG+S+RLMGL+MLVLDEADHLLDLG
Sbjct: 350 VGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRMLVLDEADHLLDLG 409
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
FRKDVE IVDCLPR+RQSLLFSATMPKE LVLKREH Y+DTVG+G VETPVKV +
Sbjct: 410 FRKDVEKIVDCLPRQRQSLLFSATMPKEVRRVSQLVLKREHKYVDTVGMGCVETPVKVKQ 469
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 100/155 (64%), Gaps = 22/155 (14%)
Query: 19 FNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKL 78
+N V R MGGGPRTFPGG+NKW+WKRMHEK A++K+ RL+EQEKQLYQAR+RS IR+ L
Sbjct: 16 WNWVSLRNMGGGPRTFPGGVNKWKWKRMHEKLARDKQNRLIEQEKQLYQARIRSHIRSTL 75
Query: 79 FDKADPDSET---NQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPVKSEQRPRSGAEA 135
PD ++ H+P+SP++HVKALADRF+KEGAEDLWN DGP+
Sbjct: 76 ----SPDHQSAAAATHRPLSPNDHVKALADRFVKEGAEDLWNNHDGPLT----------P 121
Query: 136 NQRPRLAGAPIDLRGLISDKRNSVNNSGNLNSGSN 170
N P L P RG SV GN G++
Sbjct: 122 NPTPNLNFGPKHTRGY-----RSVPEVGNSRVGAH 151
>gi|356511504|ref|XP_003524465.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 33-like
[Glycine max]
Length = 524
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/313 (65%), Positives = 239/313 (76%), Gaps = 28/313 (8%)
Query: 313 VKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGN--------- 363
+KK GSSASLG+YD+K +RV K+ + E I E++K KL+
Sbjct: 179 MKKRGSSASLGEYDVKRERRVVPKT-------SPEFEFISYELNKRKLSQIEDQQSEQQQ 231
Query: 364 ------GEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK 417
+ K +P L + DECGISPLT+KAL++AGY+ MTR++EA+L CLEG
Sbjct: 232 SNESILSNTRLKWLMQPQLCLQSLDECGISPLTVKALSSAGYVHMTRIREASLPICLEGM 291
Query: 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
DAVVKAKTGTGK++AFLLPAIE VLKA SS+T+Q VPPIYVLILCPTRELA+Q+AA A
Sbjct: 292 DAVVKAKTGTGKNVAFLLPAIETVLKAMSSNTSQRVPPIYVLILCPTRELANQVAAVAKV 351
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537
LLK HD I V TLVGG RFKVDQ+RLESDPCQILVATPGRLLDHIENKSG+S+RLMGL+
Sbjct: 352 LLKYHDAIRVQTLVGGIRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLRT 411
Query: 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTV 591
LVLDEADHLLDLGFRKDVE IVDCLPR++QSLLFSAT+PKE LVLKREH Y+DTV
Sbjct: 412 LVLDEADHLLDLGFRKDVEKIVDCLPRQQQSLLFSATIPKEVRCVSQLVLKREHKYVDTV 471
Query: 592 GLGSVETPVKVSK 604
G+G VETPVKV +
Sbjct: 472 GMGCVETPVKVKQ 484
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 84/108 (77%), Gaps = 7/108 (6%)
Query: 19 FNRVFARPMGGGPRTFPGGLNKWQWKRMHEKKAKEKEKRLLEQEKQLYQARVRSQIRTKL 78
+N V R MGGGPRTFPGG+NKW+WKRMHEK A++K+ RL++QEKQLY AR+RS IR+ L
Sbjct: 16 WNWVSLRSMGGGPRTFPGGVNKWKWKRMHEKLARDKQNRLIQQEKQLYPARIRSHIRSSL 75
Query: 79 FDKADPD---SETNQHKPMSPDEHVKALADRFMKEGAEDLWNEDDGPV 123
PD + H+P+SP++H KALADRF+K+GAEDLWN DGP+
Sbjct: 76 ----SPDHRSAAAATHRPLSPNDHFKALADRFVKDGAEDLWNNHDGPL 119
>gi|297745425|emb|CBI40505.3| unnamed protein product [Vitis vinifera]
Length = 732
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 140/238 (58%), Positives = 186/238 (78%), Gaps = 6/238 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++KA+ AGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 261 LSETRFDQCPISPLSLKAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLL 320
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IE ++K+ S Q PPI VL++CPTRELASQ AAEA LLK H +GV ++GGTR
Sbjct: 321 PSIEILVKSPPISRDQKRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTR 380
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R++++PCQILVATPGRL DHIEN +G + RLMG+K+LVLDEADHLLD+GFRKD+
Sbjct: 381 LALEQKRMQANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 440
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E I+ +P++RQ+LLFSAT+P+E + LKR+H +I+TV GS ET +V + +I
Sbjct: 441 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHI 498
>gi|147820620|emb|CAN67649.1| hypothetical protein VITISV_005080 [Vitis vinifera]
Length = 863
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 140/238 (58%), Positives = 186/238 (78%), Gaps = 6/238 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++KA+ AGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 392 LSETRFDQCPISPLSLKAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLL 451
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IE ++K+ S Q PPI VL++CPTRELASQ AAEA LLK H +GV ++GGTR
Sbjct: 452 PSIEILVKSPPISRDQKRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTR 511
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R++++PCQILVATPGRL DHIEN +G + RLMG+K+LVLDEADHLLD+GFRKD+
Sbjct: 512 LALEQKRMQANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 571
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E I+ +P++RQ+LLFSAT+P+E + LKR+H +I+TV GS ET +V + +I
Sbjct: 572 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHI 629
>gi|359489723|ref|XP_002277120.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Vitis
vinifera]
Length = 751
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 140/238 (58%), Positives = 186/238 (78%), Gaps = 6/238 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++KA+ AGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 280 LSETRFDQCPISPLSLKAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLL 339
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IE ++K+ S Q PPI VL++CPTRELASQ AAEA LLK H +GV ++GGTR
Sbjct: 340 PSIEILVKSPPISRDQKRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTR 399
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R++++PCQILVATPGRL DHIEN +G + RLMG+K+LVLDEADHLLD+GFRKD+
Sbjct: 400 LALEQKRMQANPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 459
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E I+ +P++RQ+LLFSAT+P+E + LKR+H +I+TV GS ET +V + +I
Sbjct: 460 EKIIAAVPKQRQTLLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHI 517
>gi|3776025|emb|CAA09213.1| RNA helicase [Arabidopsis thaliana]
Length = 595
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 191/262 (72%), Gaps = 7/262 (2%)
Query: 350 LIRKEISKNKLNGNGEKKEK-REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEA 408
LI+K S + + E + + LS+ RFD+ +SPL++KA+ AG+ MT VQEA
Sbjct: 263 LIKKAASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEA 322
Query: 409 TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468
TL L+GKD + KAKTGTGK++AFLLPAIEAV+K+ +S PPI VL++CPTRELA
Sbjct: 323 TLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELA 382
Query: 469 SQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL 528
SQ AAEA LLK H IGV ++GGT+ +QRR++++PCQILVATPGRL DHIEN SG
Sbjct: 383 SQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGF 442
Query: 529 SVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLK 582
+ RLMG+K+LVLDEADHLLD+GFR+D+E I+ +P++RQ+ LFSAT+P+E + LK
Sbjct: 443 ATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALK 502
Query: 583 REHTYIDTVGLGSVETPVKVSK 604
R+H +I+ V GS ET KV++
Sbjct: 503 RDHEFINCVQEGSGETHQKVTQ 524
>gi|9759355|dbj|BAB10010.1| RNA helicase-like protein [Arabidopsis thaliana]
Length = 827
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 191/262 (72%), Gaps = 7/262 (2%)
Query: 350 LIRKEISKNKLNGNGEKKEK-REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEA 408
LI+K S + + E + + LS+ RFD+ +SPL++KA+ AG+ MT VQEA
Sbjct: 329 LIKKAASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEA 388
Query: 409 TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468
TL L+GKD + KAKTGTGK++AFLLPAIEAV+K+ +S PPI VL++CPTRELA
Sbjct: 389 TLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELA 448
Query: 469 SQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL 528
SQ AAEA LLK H IGV ++GGT+ +QRR++++PCQILVATPGRL DHIEN SG
Sbjct: 449 SQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGF 508
Query: 529 SVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLK 582
+ RLMG+K+LVLDEADHLLD+GFR+D+E I+ +P++RQ+ LFSAT+P+E + LK
Sbjct: 509 ATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALK 568
Query: 583 REHTYIDTVGLGSVETPVKVSK 604
R+H +I+ V GS ET KV++
Sbjct: 569 RDHEFINCVQEGSGETHQKVTQ 590
>gi|30682500|ref|NP_196478.2| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana]
gi|109893654|sp|Q9FNM7.2|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26
gi|332003946|gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana]
Length = 850
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 191/262 (72%), Gaps = 7/262 (2%)
Query: 350 LIRKEISKNKLNGNGEKKEK-REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEA 408
LI+K S + + E + + LS+ RFD+ +SPL++KA+ AG+ MT VQEA
Sbjct: 352 LIKKAASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEA 411
Query: 409 TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468
TL L+GKD + KAKTGTGK++AFLLPAIEAV+K+ +S PPI VL++CPTRELA
Sbjct: 412 TLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELA 471
Query: 469 SQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL 528
SQ AAEA LLK H IGV ++GGT+ +QRR++++PCQILVATPGRL DHIEN SG
Sbjct: 472 SQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGF 531
Query: 529 SVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLK 582
+ RLMG+K+LVLDEADHLLD+GFR+D+E I+ +P++RQ+ LFSAT+P+E + LK
Sbjct: 532 ATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALK 591
Query: 583 REHTYIDTVGLGSVETPVKVSK 604
R+H +I+ V GS ET KV++
Sbjct: 592 RDHEFINCVQEGSGETHQKVTQ 613
>gi|255564739|ref|XP_002523364.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223537452|gb|EEF39080.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 751
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/238 (55%), Positives = 184/238 (77%), Gaps = 6/238 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS RFD+C +SPL++K + AGY +MT VQEATL L+GKD + KA+TGTGK++AFLL
Sbjct: 280 LSDSRFDQCPVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLL 339
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE V+K+ + Q PPI V+++CPTRELASQ AAEA LLK H +GV ++GGTR
Sbjct: 340 PAIEVVVKSPPTGRDQKRPPILVVVICPTRELASQAAAEANTLLKYHPSVGVQVVIGGTR 399
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q++++++PCQILVATPGRL DHIEN +G + RLMG+K+L+LDEADHLLD+GFRKD+
Sbjct: 400 LALEQKKMQANPCQILVATPGRLQDHIENTAGFATRLMGVKVLILDEADHLLDMGFRKDI 459
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E I+ +P++RQ+LLFSAT+P+E + L+R+H +I+TV G+ ET +V + ++
Sbjct: 460 ERIIAAVPKQRQTLLFSATVPEEVRQICHIALRRDHEFINTVPEGTDETHTQVRQMHL 517
>gi|356560282|ref|XP_003548422.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Glycine
max]
Length = 806
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/255 (54%), Positives = 187/255 (73%), Gaps = 9/255 (3%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++K + AGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 334 LSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLL 393
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IE V K+ S PPI VL++CPTRELASQ AAEA LLK H IGV ++GGTR
Sbjct: 394 PSIEVVAKSPPSDRDHRRPPISVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTR 453
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R++++PCQILVATPGRL DH EN +G + RLMG+K+LVLDEADHLLD+GFRKD+
Sbjct: 454 LALEQKRMQANPCQILVATPGRLRDHTENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 513
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
E I+ +P++RQ+L+FSAT+P+E + L+R+H +I+TV G+ ET +V + ++
Sbjct: 514 EKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQTHL-- 571
Query: 610 FVLVLSIKIQAFYII 624
V L Y++
Sbjct: 572 -VAPLDKHFSLLYVL 585
>gi|356522518|ref|XP_003529893.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Glycine
max]
Length = 703
Score = 286 bits (731), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 140/263 (53%), Positives = 189/263 (71%), Gaps = 12/263 (4%)
Query: 357 KNKLNGNGEKKEKREEEP------ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATL 410
+N LN + R P LS+ RFD+C ISPL++K + AGY +MT VQEATL
Sbjct: 206 QNVLNRRNTEPTPRPSSPGGGSDSYLSETRFDQCSISPLSLKGVKDAGYEKMTVVQEATL 265
Query: 411 SACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQ 470
L+GKD + KAKTGTGK++AFLLP+IE V K+ S PPI VL++CPTRELASQ
Sbjct: 266 PVILKGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPSDRDHRRPPIAVLVICPTRELASQ 325
Query: 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV 530
AAEA LLK H IGV ++GGTR ++Q+R++++PCQILVATPGRL DH EN +G +
Sbjct: 326 AAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHTENTAGFAT 385
Query: 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKRE 584
RLMG+K+LVLDEADHLLD+GFRKD+E I+ +P++RQ+L+FSAT+P+E + L+R+
Sbjct: 386 RLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRD 445
Query: 585 HTYIDTVGLGSVETPVKVSKYNI 607
H +I+TV G+ ET +V + ++
Sbjct: 446 HEFINTVQEGTEETHSQVCQTHL 468
>gi|297806935|ref|XP_002871351.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
lyrata]
gi|297317188|gb|EFH47610.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
lyrata]
Length = 794
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 142/262 (54%), Positives = 191/262 (72%), Gaps = 7/262 (2%)
Query: 350 LIRKEISKNKLNGNGEKKEK-REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEA 408
LI+K S + + E + + LS+ RFD+ +SPL++KA+ AG+ MT VQEA
Sbjct: 296 LIKKAASAKAVQTDKPSGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEA 355
Query: 409 TLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELA 468
TL L+GKD + KAKTGTGK++AFLLPAIEAV+K+ +S PPI VL++CPTRELA
Sbjct: 356 TLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDNRQPPIIVLVVCPTRELA 415
Query: 469 SQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGL 528
SQ AAEA LLK H IGV ++GGT+ +QRR++++PCQILVATPGRL DHIEN SG
Sbjct: 416 SQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGF 475
Query: 529 SVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLK 582
+ RLMG+K+LVLDEADHLLD+GFR+D+E I+ +P++RQ+ LFSAT+P+E + LK
Sbjct: 476 ATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALK 535
Query: 583 REHTYIDTVGLGSVETPVKVSK 604
R+H +I+ V G+ ET KV++
Sbjct: 536 RDHEFINCVQEGTGETHQKVTQ 557
>gi|339716204|gb|AEJ88341.1| putative DEAD-box ATP-dependent RNA helicase [Tamarix hispida]
Length = 783
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/252 (54%), Positives = 188/252 (74%), Gaps = 11/252 (4%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++KA+ AGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 312 LSETRFDQCDISPLSLKAVKDAGYEKMTMVQEATLPVILKGKDVMAKAKTGTGKTVAFLL 371
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IE V+K+ Q PPI VL++CPTRELA+Q A EA +LLK H IG ++GGTR
Sbjct: 372 PSIELVVKSPPVGRDQKRPPILVLVVCPTRELANQAAKEAGSLLKYHPSIGCQVVIGGTR 431
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
V+Q+R++++PCQILVATPGRL DH+EN +G + RLMG+K+LVLDEADHLLD+GFRKD+
Sbjct: 432 LAVEQKRMQANPCQILVATPGRLRDHLENTAGFATRLMGVKVLVLDEADHLLDMGFRKDI 491
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
E I+ +P++RQ+LLFSAT+P E + LKR+H +I+ V GS +T +V + ++
Sbjct: 492 ERIIAAVPKQRQTLLFSATIPDEVRQICHVALKRDHDFINKVQEGSGQTHSQVRQMHLVA 551
Query: 610 -----FVLVLSI 616
F+L+ +I
Sbjct: 552 PLETHFLLLYAI 563
>gi|449475575|ref|XP_004154493.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
31-like [Cucumis sativus]
Length = 842
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/272 (52%), Positives = 195/272 (71%), Gaps = 17/272 (6%)
Query: 350 LIRKEISKNKLNGNGEKKEKRE--------EEPILSQKRFDECGISPLTIKALTAAGYIQ 401
L RK S N L +GEK + + + LS+ RFD+C ISPL++K + AGY +
Sbjct: 284 LFRK--STNTLFPSGEKVSEMDRPRTSPGGSDSYLSETRFDQCSISPLSLKGIKDAGYEK 341
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
MT VQEATL L+GKD + KAKTGTGK++AFLLP+IE V+K+ + Q PPI VL++
Sbjct: 342 MTVVQEATLPLILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTGD-QKRPPILVLVI 400
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
CPTRELA+Q A EA LLK H IGV ++GGTR ++Q+R++++PCQILVATPGRL DH
Sbjct: 401 CPTRELATQAANEANTLLKYHSTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLKDH 460
Query: 522 IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE--- 578
IEN +G + RLMG+K+LVLDEADHLLD+GFRKD+E I+ +P++RQ+LLFSAT+P E
Sbjct: 461 IENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLLFSATVPDEVRQ 520
Query: 579 ---LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
+ L+R+H +++T+ GS +T +V + I
Sbjct: 521 ISHIALRRDHEFVNTIEEGSEDTHAQVRQMQI 552
>gi|449443947|ref|XP_004139737.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
26-like [Cucumis sativus]
Length = 841
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 143/272 (52%), Positives = 195/272 (71%), Gaps = 17/272 (6%)
Query: 350 LIRKEISKNKLNGNGEKKEKRE--------EEPILSQKRFDECGISPLTIKALTAAGYIQ 401
L RK S N L +GEK + + + LS+ RFD+C ISPL++K + AGY +
Sbjct: 283 LFRK--STNTLFPSGEKVSEMDRPRTSPGGSDSYLSETRFDQCSISPLSLKGIKDAGYEK 340
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
MT VQEATL L+GKD + KAKTGTGK++AFLLP+IE V+K+ + Q PPI VL++
Sbjct: 341 MTVVQEATLPLILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTGD-QKRPPILVLVI 399
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
CPTRELA+Q A EA LLK H IGV ++GGTR ++Q+R++++PCQILVATPGRL DH
Sbjct: 400 CPTRELATQAANEANTLLKYHSTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLKDH 459
Query: 522 IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE--- 578
IEN +G + RLMG+K+LVLDEADHLLD+GFRKD+E I+ +P++RQ+LLFSAT+P E
Sbjct: 460 IENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLLFSATVPDEVRQ 519
Query: 579 ---LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
+ L+R+H +++T+ GS +T +V + I
Sbjct: 520 ISHIALRRDHEFVNTIEEGSEDTHAQVRQMQI 551
>gi|222635678|gb|EEE65810.1| hypothetical protein OsJ_21540 [Oryza sativa Japonica Group]
Length = 921
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 209/324 (64%), Gaps = 25/324 (7%)
Query: 292 SDDDSDIDSEDVDEKVEGWRD--VKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVE 349
S+DDS++ D D+ G+ D G +L + K P +S++ E +E V
Sbjct: 381 SEDDSELGEVDEDDGPSGFEDDLFDDEGGEKNLVESPAK--NSAPFESIKGEPIDQEGVV 438
Query: 350 LIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEAT 409
R+ +G G+ LSQ RFDEC +SPLT+K + AAGY +MT VQEAT
Sbjct: 439 HTRE-------SGGGDS--------YLSQTRFDECSLSPLTLKGVKAAGYERMTAVQEAT 483
Query: 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469
L L+GKD + KAKTGTGK++AFLLPAIE V K + PPI V+++CPTRELA
Sbjct: 484 LPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDCDKKRPPISVVVVCPTRELAD 543
Query: 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS 529
Q AAEA LLK H IGV ++GGTR ++Q+R+ ++PCQILVATPGRL DH+EN G +
Sbjct: 544 QAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATPGRLKDHMENTPGFA 603
Query: 530 VRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKR 583
RLMG+K+L+LDEAD LLD+GFR D+E IV LP++RQ+LLFSAT+P E + +KR
Sbjct: 604 TRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATVPDEVRQVCHIAMKR 663
Query: 584 EHTYIDTVGLGSVETPVKVSKYNI 607
+ +++TV GS ET +V + ++
Sbjct: 664 DLEFVNTVEEGSEETHSQVKQMHV 687
>gi|218198307|gb|EEC80734.1| hypothetical protein OsI_23209 [Oryza sativa Indica Group]
Length = 921
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 208/324 (64%), Gaps = 25/324 (7%)
Query: 292 SDDDSDIDSEDVDEKVEGWRD--VKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVE 349
S+DD ++ D D+ G+ D G +L + K P +S++ E +E V
Sbjct: 381 SEDDCELGEVDEDDGPSGFEDDLFDDEGGEKNLVESPAK--NSAPFESIKGEPVDQEGVV 438
Query: 350 LIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEAT 409
R+ +G G+ LSQ RFDEC +SPLT+K + AAGY +MT VQEAT
Sbjct: 439 HTRE-------SGGGDS--------YLSQTRFDECSLSPLTLKGVKAAGYERMTAVQEAT 483
Query: 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469
L L+GKD + KAKTGTGK++AFLLPAIE V K Q PPI V+++CPTRELA
Sbjct: 484 LPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDRDQKRPPISVVVVCPTRELAD 543
Query: 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS 529
Q AAEA LLK H IGV ++GGTR ++Q+R+ ++PCQILVATPGRL DH+EN G +
Sbjct: 544 QAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATPGRLKDHMENTPGFA 603
Query: 530 VRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKR 583
RLMG+K+L+LDEAD LLD+GFR D+E IV LP++RQ+LLFSAT+P E + +KR
Sbjct: 604 TRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATVPDEVRQVCHIAMKR 663
Query: 584 EHTYIDTVGLGSVETPVKVSKYNI 607
+ +++TV GS ET +V + ++
Sbjct: 664 DLEFVNTVEEGSEETHSQVKQMHV 687
>gi|143454912|sp|Q0DBU5.2|RH31_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 31
Length = 547
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 209/324 (64%), Gaps = 25/324 (7%)
Query: 292 SDDDSDIDSEDVDEKVEGWRD--VKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVE 349
S+DDS++ D D+ G+ D G +L + K P +S++ E +E V
Sbjct: 7 SEDDSELGEVDEDDGPSGFEDDLFDDEGGEKNLVESPAK--NSAPFESIKGEPIDQEGVV 64
Query: 350 LIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEAT 409
R+ +G G+ LSQ RFDEC +SPLT+K + AAGY +MT VQEAT
Sbjct: 65 HTRE-------SGGGDS--------YLSQTRFDECSLSPLTLKGVKAAGYERMTAVQEAT 109
Query: 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469
L L+GKD + KAKTGTGK++AFLLPAIE V K + PPI V+++CPTRELA
Sbjct: 110 LPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDCDKKRPPISVVVVCPTRELAD 169
Query: 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS 529
Q AAEA LLK H IGV ++GGTR ++Q+R+ ++PCQILVATPGRL DH+EN G +
Sbjct: 170 QAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATPGRLKDHMENTPGFA 229
Query: 530 VRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKR 583
RLMG+K+L+LDEAD LLD+GFR D+E IV LP++RQ+LLFSAT+P E + +KR
Sbjct: 230 TRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATVPDEVRQVCHIAMKR 289
Query: 584 EHTYIDTVGLGSVETPVKVSKYNI 607
+ +++TV GS ET +V + ++
Sbjct: 290 DLEFVNTVEEGSEETHSQVKQMHV 313
>gi|52077088|dbj|BAD46119.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|53791928|dbj|BAD54190.1| putative RNA helicase [Oryza sativa Japonica Group]
Length = 562
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 154/324 (47%), Positives = 209/324 (64%), Gaps = 25/324 (7%)
Query: 292 SDDDSDIDSEDVDEKVEGWRD--VKKMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVE 349
S+DDS++ D D+ G+ D G +L + K P +S++ E +E V
Sbjct: 7 SEDDSELGEVDEDDGPSGFEDDLFDDEGGEKNLVESPAK--NSAPFESIKGEPIDQEGVV 64
Query: 350 LIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEAT 409
R+ +G G+ LSQ RFDEC +SPLT+K + AAGY +MT VQEAT
Sbjct: 65 HTRE-------SGGGDS--------YLSQTRFDECSLSPLTLKGVKAAGYERMTAVQEAT 109
Query: 410 LSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELAS 469
L L+GKD + KAKTGTGK++AFLLPAIE V K + PPI V+++CPTRELA
Sbjct: 110 LPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDCDKKRPPISVVVVCPTRELAD 169
Query: 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS 529
Q AAEA LLK H IGV ++GGTR ++Q+R+ ++PCQILVATPGRL DH+EN G +
Sbjct: 170 QAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATPGRLKDHMENTPGFA 229
Query: 530 VRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKR 583
RLMG+K+L+LDEAD LLD+GFR D+E IV LP++RQ+LLFSAT+P E + +KR
Sbjct: 230 TRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATVPDEVRQVCHIAMKR 289
Query: 584 EHTYIDTVGLGSVETPVKVSKYNI 607
+ +++TV GS ET +V + ++
Sbjct: 290 DLEFVNTVEEGSEETHSQVKQMHV 313
>gi|297806937|ref|XP_002871352.1| dead box RNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297317189|gb|EFH47611.1| dead box RNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 558
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 177/235 (75%), Gaps = 6/235 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+ +SPL++K + AG+ MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 72 LSKTRFDQFPLSPLSLKGIVDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLL 131
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IEAV+K+ +S PPI VL++CPTRELA Q AAEA LLK H IGV ++GGT+
Sbjct: 132 PSIEAVIKSPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTK 191
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QRRL+ PCQILVATPGRL DHI+N SG + RLMG+K+LVLDEADHLLD+GFR+++
Sbjct: 192 LPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREI 251
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P++RQ+ LFSAT+P+E + LKR+H +++ V G+ ET KVS+
Sbjct: 252 ERIIAAVPKQRQTFLFSATVPEEVRQMCHVALKRDHEFVNCVQEGAGETHQKVSQ 306
>gi|413954170|gb|AFW86819.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 924
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/238 (56%), Positives = 176/238 (73%), Gaps = 6/238 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LSQKRFDEC +SPL++K + AAGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 453 LSQKRFDECPLSPLSLKGVKAAGYERMTAVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 512
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE V K PPI V+++CPTRELA Q AAEA LLK H IGV ++GGTR
Sbjct: 513 PAIEVVSKLPPVDRDLKKPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTR 572
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R+ ++PCQILVATPGRL DH+EN G + RL+G+K+L+LDEAD LLD+GFR D+
Sbjct: 573 MALEQKRMHTNPCQILVATPGRLRDHMENTPGFATRLLGVKVLILDEADRLLDMGFRSDI 632
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E IV LP++RQ+LLFSAT+P E + +KR+ +++TV GS ET +V + ++
Sbjct: 633 EKIVAALPKQRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVQEGSEETHSQVKQMHL 690
>gi|413954169|gb|AFW86818.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 854
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/238 (56%), Positives = 176/238 (73%), Gaps = 6/238 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LSQKRFDEC +SPL++K + AAGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 453 LSQKRFDECPLSPLSLKGVKAAGYERMTAVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 512
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE V K PPI V+++CPTRELA Q AAEA LLK H IGV ++GGTR
Sbjct: 513 PAIEVVSKLPPVDRDLKKPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTR 572
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R+ ++PCQILVATPGRL DH+EN G + RL+G+K+L+LDEAD LLD+GFR D+
Sbjct: 573 MALEQKRMHTNPCQILVATPGRLRDHMENTPGFATRLLGVKVLILDEADRLLDMGFRSDI 632
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E IV LP++RQ+LLFSAT+P E + +KR+ +++TV GS ET +V + ++
Sbjct: 633 EKIVAALPKQRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVQEGSEETHSQVKQMHL 690
>gi|357124203|ref|XP_003563793.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like
[Brachypodium distachyon]
Length = 540
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 177/238 (74%), Gaps = 8/238 (3%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LSQ RFDEC +SPLT+K + AAGY +MT VQEATL L+GKD + KA+TGTGK++AFLL
Sbjct: 71 LSQTRFDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKARTGTGKTVAFLL 130
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE V K + Q PPI V+++CPTRELA Q AAEA LLK H IGV ++GGTR
Sbjct: 131 PAIEVVSKLPPND--QKKPPISVVVVCPTRELADQAAAEANKLLKFHASIGVQLVIGGTR 188
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R+ ++PCQILVATPGRL DH+EN G + RLMG+K+L+LDEAD LLD+GFR D+
Sbjct: 189 MALEQKRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKILILDEADRLLDMGFRTDI 248
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E IV LP++RQ+LLFSAT+P E + +KR+ +++TV GS ET +V + +I
Sbjct: 249 EKIVAALPKQRQTLLFSATVPDEVRQVCYVAMKRDLEFVNTVQEGSEETHSQVKQMHI 306
>gi|224067972|ref|XP_002302625.1| predicted protein [Populus trichocarpa]
gi|222844351|gb|EEE81898.1| predicted protein [Populus trichocarpa]
Length = 758
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/239 (53%), Positives = 178/239 (74%), Gaps = 6/239 (2%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+S+ RFD+C ISPL++K + AGY +MT VQ ATL L+GKD + KAKTGTGK++AFL
Sbjct: 286 FMSETRFDQCSISPLSLKGINHAGYEKMTVVQAATLPIILKGKDVLAKAKTGTGKTVAFL 345
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP+IE V+K+ Q PPI VL++CPTRELA+Q A EA LLK H IGV ++GG
Sbjct: 346 LPSIEVVVKSPPHDRDQKRPPILVLVVCPTRELATQAATEAKVLLKYHPAIGVQVVIGGV 405
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R ++Q+ ++++ CQILVATPGRL DHIEN +G + RLMG+K+LVLDEAD LLD+GFRKD
Sbjct: 406 RIALEQKSMQANLCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADRLLDMGFRKD 465
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNI 607
+E I+ +P++RQ+L+FSAT+P+E+ LKR+H +I+TV G+ +T KV + ++
Sbjct: 466 IEKIIAAIPKQRQTLMFSATVPEEVRQICHSALKRDHEFINTVQEGAEDTHSKVRQMHV 524
>gi|109893656|sp|Q9FFQ1.2|RH31_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 31
Length = 716
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 129/247 (52%), Positives = 180/247 (72%), Gaps = 6/247 (2%)
Query: 367 KEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTG 426
K + + L++ RFD +SPL++KA+ AGY MT VQEATL L+GKD + KAKTG
Sbjct: 236 KTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTG 295
Query: 427 TGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486
TGK++AFLLP+IE V+K+ +S PPI L++CPTRELA+Q A EA LLK H IG
Sbjct: 296 TGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIG 355
Query: 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
V ++GGTR ++Q+R++++PCQILVATPGRL DHIEN G + RL G+K+LVLDEADHL
Sbjct: 356 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHL 415
Query: 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPV 600
LD+GFRKD+E I+ +P+ RQ+ LFSAT+P+E + L+R+H +++ V G++ET
Sbjct: 416 LDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQ 475
Query: 601 KVSKYNI 607
+V + ++
Sbjct: 476 QVRQMHM 482
>gi|297797363|ref|XP_002866566.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312401|gb|EFH42825.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 721
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 128/238 (53%), Positives = 178/238 (74%), Gaps = 6/238 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
L++ RFD+ +SPL++KA+ AGY MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 250 LTKTRFDQYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLL 309
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IE V+K+ +S PPI L++CPTRELA+Q A EA LLK H IGV ++GGTR
Sbjct: 310 PSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTR 369
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++Q+R++++PCQILVATPGRL DHIEN G + RL G+K+LVLDEADHLLD+GFRKD+
Sbjct: 370 LGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDI 429
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
E I+ +P+ RQ+ LFSAT+P+E + L+R+H +++ V G++ET +V + ++
Sbjct: 430 ERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHM 487
>gi|15242323|ref|NP_196479.1| DEAD-box ATP-dependent RNA helicase 25 [Arabidopsis thaliana]
gi|108861886|sp|Q94C75.2|RH25_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 25
gi|3776023|emb|CAA09212.1| RNA helicase [Arabidopsis thaliana]
gi|9759356|dbj|BAB10011.1| RNA helicase [Arabidopsis thaliana]
gi|23297113|gb|AAN13096.1| RNA helicase [Arabidopsis thaliana]
gi|332003947|gb|AED91330.1| DEAD-box ATP-dependent RNA helicase 25 [Arabidopsis thaliana]
Length = 563
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 175/235 (74%), Gaps = 6/235 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+ +SPLT+K + AG+ MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 77 LSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLL 136
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IEAV+KA +S PPI VL++CPTRELA Q AAEA LLK H IGV ++GGT+
Sbjct: 137 PSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTK 196
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QRRL+ PCQILVATPGRL DHI+N SG + RLMG+K+LVLDEADHLLD+GFR+++
Sbjct: 197 LPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREI 256
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P++RQ+ LFSAT+ E + LKR+H +++ V G+ ET KVS+
Sbjct: 257 ERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQ 311
>gi|334188604|ref|NP_201168.2| DEAD-box ATP-dependent RNA helicase 31 [Arabidopsis thaliana]
gi|332010396|gb|AED97779.1| DEAD-box ATP-dependent RNA helicase 31 [Arabidopsis thaliana]
Length = 788
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 129/247 (52%), Positives = 180/247 (72%), Gaps = 6/247 (2%)
Query: 367 KEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTG 426
K + + L++ RFD +SPL++KA+ AGY MT VQEATL L+GKD + KAKTG
Sbjct: 308 KTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTG 367
Query: 427 TGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486
TGK++AFLLP+IE V+K+ +S PPI L++CPTRELA+Q A EA LLK H IG
Sbjct: 368 TGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIG 427
Query: 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
V ++GGTR ++Q+R++++PCQILVATPGRL DHIEN G + RL G+K+LVLDEADHL
Sbjct: 428 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHL 487
Query: 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPV 600
LD+GFRKD+E I+ +P+ RQ+ LFSAT+P+E + L+R+H +++ V G++ET
Sbjct: 488 LDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQ 547
Query: 601 KVSKYNI 607
+V + ++
Sbjct: 548 QVRQMHM 554
>gi|14334882|gb|AAK59619.1| putative RNA helicase [Arabidopsis thaliana]
Length = 563
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 175/235 (74%), Gaps = 6/235 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+ +SPLT+K + AG+ MT VQEATL L+GK+ + KAKTGTGK++AFLL
Sbjct: 77 LSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKNILAKAKTGTGKTVAFLL 136
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P+IEAV+KA +S PPI VL++CPTRELA Q AAEA LLK H IGV ++GGT+
Sbjct: 137 PSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTK 196
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QRRL+ PCQILVATPGRL DHI+N SG + RLMG+K+LVLDEADHLLD+GFR+++
Sbjct: 197 LPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREI 256
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P++RQ+ LFSAT+ E + LKR+H +++ V G+ ET KVS+
Sbjct: 257 ERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQ 311
>gi|414881423|tpg|DAA58554.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 586
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 136/248 (54%), Positives = 181/248 (72%), Gaps = 8/248 (3%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++KA+ AGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 116 LSETRFDQCAISPLSMKAVKDAGYERMTEVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 175
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE VL QL PPI +L++CPTRELA+Q+A EA LL+ H +GV ++GGTR
Sbjct: 176 PAIE-VLSTLPHQRGQLRPPINLLVMCPTRELANQVAVEARKLLRYHRTLGVQVVIGGTR 234
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++++PCQILVATPGRL DH+EN G S RL G+K+LVLDEAD LLD+GFR+D+
Sbjct: 235 LTQEQRSMQANPCQILVATPGRLKDHLENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDI 294
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK-YNIY 608
E I+ +PR RQ+LLFSAT+P+E + +K+++ +I+TV G ET +VS+ Y +
Sbjct: 295 EKIIASIPRERQTLLFSATVPEEVRQISHVAMKKDYRFINTVKEGDEETHAQVSQMYMVA 354
Query: 609 VFVLVLSI 616
L SI
Sbjct: 355 PLDLHFSI 362
>gi|414881422|tpg|DAA58553.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 601
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/248 (54%), Positives = 181/248 (72%), Gaps = 8/248 (3%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++KA+ AGY +MT VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 116 LSETRFDQCAISPLSMKAVKDAGYERMTEVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 175
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE VL QL PPI +L++CPTRELA+Q+A EA LL+ H +GV ++GGTR
Sbjct: 176 PAIE-VLSTLPHQRGQLRPPINLLVMCPTRELANQVAVEARKLLRYHRTLGVQVVIGGTR 234
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++++PCQILVATPGRL DH+EN G S RL G+K+LVLDEAD LLD+GFR+D+
Sbjct: 235 LTQEQRSMQANPCQILVATPGRLKDHLENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDI 294
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK-YNIY 608
E I+ +PR RQ+LLFSAT+P+E + +K+++ +I+TV G ET +VS+ Y +
Sbjct: 295 EKIIASIPRERQTLLFSATVPEEVRQISHVAMKKDYRFINTVKEGDEETHAQVSQMYMVA 354
Query: 609 VFVLVLSI 616
L SI
Sbjct: 355 PLDLHFSI 362
>gi|10177044|dbj|BAB10456.1| RNA helicase [Arabidopsis thaliana]
Length = 522
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 129/247 (52%), Positives = 180/247 (72%), Gaps = 6/247 (2%)
Query: 367 KEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTG 426
K + + L++ RFD +SPL++KA+ AGY MT VQEATL L+GKD + KAKTG
Sbjct: 42 KTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTG 101
Query: 427 TGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486
TGK++AFLLP+IE V+K+ +S PPI L++CPTRELA+Q A EA LLK H IG
Sbjct: 102 TGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIG 161
Query: 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
V ++GGTR ++Q+R++++PCQILVATPGRL DHIEN G + RL G+K+LVLDEADHL
Sbjct: 162 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHL 221
Query: 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPV 600
LD+GFRKD+E I+ +P+ RQ+ LFSAT+P+E + L+R+H +++ V G++ET
Sbjct: 222 LDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQ 281
Query: 601 KVSKYNI 607
+V + ++
Sbjct: 282 QVRQMHM 288
>gi|218188673|gb|EEC71100.1| hypothetical protein OsI_02884 [Oryza sativa Indica Group]
Length = 593
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/235 (55%), Positives = 174/235 (74%), Gaps = 6/235 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS RFD+C ISPL++KA+ AGY +MT+VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 122 LSDTRFDQCAISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLL 181
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + +S QL P I +L++CPTRELA Q+A EA LLK H +GV ++GGTR
Sbjct: 182 PAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTR 241
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++++PCQILVATPGRL DH+EN G S RL G+K+LVLDEAD LLD+GFR+D+
Sbjct: 242 LTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDI 301
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P+ RQ+LLFSAT+P+E + +K+ + +I+TV G ET +VS+
Sbjct: 302 ERIIASVPKERQTLLFSATVPEEVRQISHIAMKKNYKFINTVKDGDEETHAQVSQ 356
>gi|242053633|ref|XP_002455962.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor]
gi|241927937|gb|EES01082.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor]
Length = 588
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/248 (54%), Positives = 180/248 (72%), Gaps = 8/248 (3%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C ISPL++KA+ AGY +MT VQ ATL L+GKD + KAKTGTGK++AFLL
Sbjct: 118 LSETRFDQCAISPLSLKAVKDAGYERMTEVQAATLPIILQGKDVLAKAKTGTGKTVAFLL 177
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE VL QL PPI +L++CPTRELA+Q+A EA LL+ H +GV ++GGTR
Sbjct: 178 PAIE-VLSTLPRERNQLRPPINLLVMCPTRELANQVAVEARKLLRYHRSLGVQVVIGGTR 236
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++++PCQILVATPGRL DH+EN G S RL G+K+LVLDEAD LLD+GFR+D+
Sbjct: 237 LTQEQRSMQANPCQILVATPGRLKDHLENTPGFSSRLKGVKVLVLDEADRLLDMGFRRDI 296
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK-YNIY 608
E I+ +PR RQ+LLFSAT+P+E + +K+++ +++TV G ET +VS+ Y +
Sbjct: 297 EKIIASIPRERQTLLFSATVPEEVRQISHVAMKKDYRFVNTVKEGDEETHAQVSQMYMVA 356
Query: 609 VFVLVLSI 616
L SI
Sbjct: 357 PLDLHFSI 364
>gi|115438621|ref|NP_001043590.1| Os01g0618400 [Oryza sativa Japonica Group]
gi|75322035|sp|Q5ZBH5.1|RH25_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 25
gi|54290854|dbj|BAD61515.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113533121|dbj|BAF05504.1| Os01g0618400 [Oryza sativa Japonica Group]
gi|215695286|dbj|BAG90477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618865|gb|EEE54997.1| hypothetical protein OsJ_02628 [Oryza sativa Japonica Group]
Length = 594
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 130/235 (55%), Positives = 174/235 (74%), Gaps = 6/235 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS RFD+C ISPL++KA+ AGY +MT+VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 123 LSDTRFDQCTISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLL 182
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + +S QL P I +L++CPTRELA Q+A EA LLK H +GV ++GGTR
Sbjct: 183 PAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTR 242
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++++PCQILVATPGRL DH+EN G S RL G+K+LVLDEAD LLD+GFR+D+
Sbjct: 243 LTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDI 302
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P+ RQ+LLFSAT+P+E + +K+ + +I+TV G ET +VS+
Sbjct: 303 ERIIASVPKERQTLLFSATVPEEVRQISHIAMKKNYKFINTVKDGDEETHAQVSQ 357
>gi|242053635|ref|XP_002455963.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor]
gi|241927938|gb|EES01083.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor]
Length = 500
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/235 (55%), Positives = 177/235 (75%), Gaps = 12/235 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
L++ RFD+C ISPL++KA+ AGY +MT+VQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 96 LTETRFDQCAISPLSLKAIKDAGYERMTQVQEATLPIILQGKDVLAKAKTGTGKTVAFLL 155
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE VL A ST+ I +L++CPTRELA+Q+AAEA LLK H +GV ++GGTR
Sbjct: 156 PAIE-VLSALPRSTS-----INLLVMCPTRELANQVAAEARKLLKYHRSLGVQVVIGGTR 209
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++++PCQILVATPGRL DH+EN G S R+ G+K+LVLDEAD LLD+GFR+D+
Sbjct: 210 LPQEQRSMQANPCQILVATPGRLKDHLENTPGFSTRIKGVKVLVLDEADRLLDMGFRRDI 269
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P+ RQ+LLFSAT+ +E L +KR++ +I+TV G ET +V++
Sbjct: 270 EKIISFIPKERQTLLFSATVSEEVRQISHLAMKRDYNFINTVQEGDEETHAQVNQ 324
>gi|226497588|ref|NP_001145834.1| uncharacterized protein LOC100279341 [Zea mays]
gi|219884609|gb|ACL52679.1| unknown [Zea mays]
gi|414881421|tpg|DAA58552.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 560
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 136/276 (49%), Positives = 191/276 (69%), Gaps = 19/276 (6%)
Query: 354 EISKNKLNGNGEKKEKREEEPI------LSQKRFDECGISPLTIKALTAAGYIQMTRVQE 407
E + + G+ K ++ E + L++ RFD+C ISPL++KA+ AGY +MTRVQE
Sbjct: 67 EQGADGMEGSASKTDRSVHEAVGVDGTYLTETRFDQCAISPLSLKAIKDAGYERMTRVQE 126
Query: 408 ATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467
ATL L+GKD + KAKTGTGK++AFLLPAIE VL A ST+ I +L++CPTREL
Sbjct: 127 ATLPIILQGKDVLAKAKTGTGKTVAFLLPAIE-VLSALPRSTS-----INLLVMCPTREL 180
Query: 468 ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527
A+Q+AAEA LLK H +GV ++GGTR +QR ++++PCQILVATPGRL DH+EN G
Sbjct: 181 ANQLAAEARKLLKYHRSLGVQVVIGGTRLPQEQRSMQANPCQILVATPGRLKDHLENTPG 240
Query: 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVL 581
S R+ G+K+LVLDEAD LLD+GFR+D+E I+ +P+ RQ+LLFSAT+ +E L +
Sbjct: 241 FSTRIRGVKVLVLDEADRLLDMGFRRDIEKIITFIPKDRQTLLFSATVSEEIHQISHLAM 300
Query: 582 KREHTYIDTVGLGSVETPVKVSK-YNIYVFVLVLSI 616
++++ +I+ V G ET +V++ Y + L L I
Sbjct: 301 RKDYDFINAVQEGDEETHAQVNQTYMVAPLGLHLPI 336
>gi|115438623|ref|NP_001043591.1| Os01g0618500 [Oryza sativa Japonica Group]
gi|122228652|sp|Q0JL73.1|RH26_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 26
gi|113533122|dbj|BAF05505.1| Os01g0618500 [Oryza sativa Japonica Group]
gi|222618866|gb|EEE54998.1| hypothetical protein OsJ_02629 [Oryza sativa Japonica Group]
Length = 536
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 180/248 (72%), Gaps = 13/248 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C +SPL++KA+ AGY +MT+VQEATL L+G+D + KAKTGTGK++AFLL
Sbjct: 71 LSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLL 130
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + ST P I +L++CPTRELA+Q+AAEA LLK H +GV ++GGT+
Sbjct: 131 PAIELL------STLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTK 184
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++S+PCQILVATPGRL DH+EN G S R+ G+K+LVLDEAD LLD+GFR+D+
Sbjct: 185 LPQEQRSMQSNPCQILVATPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDI 244
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK-YNIY 608
E I+ +P+ RQ+LLFSAT+P+E + +KR + +I+TV G ET +VS+ Y +
Sbjct: 245 EKIIAFIPKERQTLLFSATVPEEVRQISHIAMKRGYKFINTVKEGDEETHSQVSQMYMVA 304
Query: 609 VFVLVLSI 616
L SI
Sbjct: 305 PLDLHFSI 312
>gi|54290855|dbj|BAD61516.1| myc-regulated DEAD/H box 18 RNA helicase-like [Oryza sativa
Japonica Group]
Length = 535
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 180/248 (72%), Gaps = 13/248 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C +SPL++KA+ AGY +MT+VQEATL L+G+D + KAKTGTGK++AFLL
Sbjct: 70 LSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLL 129
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + ST P I +L++CPTRELA+Q+AAEA LLK H +GV ++GGT+
Sbjct: 130 PAIELL------STLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTK 183
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++S+PCQILVATPGRL DH+EN G S R+ G+K+LVLDEAD LLD+GFR+D+
Sbjct: 184 LPQEQRSMQSNPCQILVATPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDI 243
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK-YNIY 608
E I+ +P+ RQ+LLFSAT+P+E + +KR + +I+TV G ET +VS+ Y +
Sbjct: 244 EKIIAFIPKERQTLLFSATVPEEVRQISHIAMKRGYKFINTVKEGDEETHSQVSQMYMVA 303
Query: 609 VFVLVLSI 616
L SI
Sbjct: 304 PLDLHFSI 311
>gi|218188674|gb|EEC71101.1| hypothetical protein OsI_02885 [Oryza sativa Indica Group]
Length = 536
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 127/235 (54%), Positives = 174/235 (74%), Gaps = 12/235 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C +SPL++KA+ AGY +MT+VQEATL L+G+D + KAKTGTGK++AFLL
Sbjct: 71 LSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAFLL 130
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + ST P I +L++CPTRELA+Q+AAEA LLK H +GV ++GGT+
Sbjct: 131 PAIELL------STLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTK 184
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++S+PCQILVATPGRL DH+EN G R+ G+K+LVLDEAD LLD+GFR+D+
Sbjct: 185 LPQEQRSMQSNPCQILVATPGRLKDHLENTPGFPNRIKGVKVLVLDEADRLLDMGFRRDI 244
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P+ RQ+LLFSAT+P+E + +KR + +I+TV G ET +VS+
Sbjct: 245 EKIIAFIPKERQTLLFSATVPEEVRQISHVAMKRGYKFINTVKEGDEETHSQVSQ 299
>gi|357135550|ref|XP_003569372.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 25-like
[Brachypodium distachyon]
Length = 587
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 178/248 (71%), Gaps = 7/248 (2%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+ ISPL++K + AGY +MT+VQ ATL L+GKD + KAKTGTGK++AFLL
Sbjct: 116 LSETRFDQSAISPLSLKGVKDAGYGRMTQVQAATLPVILQGKDVLAKAKTGTGKTVAFLL 175
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + K SS +QL I +L++CPTRELA+Q+A EA LLK H +GV ++GGTR
Sbjct: 176 PAIEVLSKLPSSQRSQLRSSINLLVMCPTRELANQVAVEAKKLLKYHRSLGVQVVIGGTR 235
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++++PCQILVATPGRL DH+EN G S RL G+K+LVLDEAD LLD+GFR+D+
Sbjct: 236 ITQEQRNMQANPCQILVATPGRLKDHLENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDI 295
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK-YNIY 608
E I+ P RQ+LLFSAT+P+E + +K+++ +I+TV G ET +VS+ Y +
Sbjct: 296 EKIMAATPSDRQTLLFSATVPEEVRQISHVAMKKDYKFINTVKEGDEETHSQVSQMYMVA 355
Query: 609 VFVLVLSI 616
L SI
Sbjct: 356 PLDLHFSI 363
>gi|357130508|ref|XP_003566890.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 25-like
[Brachypodium distachyon]
Length = 540
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 170/235 (72%), Gaps = 12/235 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS RFD+C +SPL++K + AGY ++TRVQEATL L+GKD + KAKTGTGK++AFLL
Sbjct: 75 LSDTRFDQCNVSPLSLKGIHDAGYERLTRVQEATLPVILQGKDVLAKAKTGTGKTVAFLL 134
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + K S++ L L++ PTRELA+Q+A EA LLK H + V ++GGTR
Sbjct: 135 PAIELLSKLPRSTSINL------LVMLPTRELANQVAVEARKLLKYHSTLDVQVVIGGTR 188
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+QR ++S PCQILVATPGRL+DH++N G + R+ G+K+LVLDEAD LLD+GFR+D+
Sbjct: 189 LPQEQRSMKSSPCQILVATPGRLIDHLDNTPGFATRIKGVKVLVLDEADRLLDMGFRRDI 248
Query: 556 ENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSK 604
E I+ +P+ RQ+LLFSAT+P E L +++++ +I+TV G ET +V++
Sbjct: 249 EKIISFIPKGRQTLLFSATVPAEVRQISNLAMQKDYKFINTVQEGDEETHSQVNQ 303
>gi|224130528|ref|XP_002320859.1| predicted protein [Populus trichocarpa]
gi|222861632|gb|EEE99174.1| predicted protein [Populus trichocarpa]
Length = 446
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 157/212 (74%), Gaps = 6/212 (2%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
MT VQ ATL ++GKD + KAKTGTGK++AFLLP+IE V+K+ Q PPI VL++
Sbjct: 1 MTVVQAATLPVIVKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPLDRDQKRPPIIVLVI 60
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
CPTRELA+Q A EA LLK H IGV ++GG R +QR L+++PCQILVATPGRL DH
Sbjct: 61 CPTRELATQAATEANTLLKYHPSIGVQVVIGGVRIASEQRNLQANPCQILVATPGRLKDH 120
Query: 522 IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL-- 579
IEN +G + RLMG+K+LVLDEAD LLD+GFRKD+E I+ +P +RQ+L+FSAT+P+E+
Sbjct: 121 IENTAGFATRLMGVKVLVLDEADRLLDMGFRKDIEKIIAAIPEQRQTLMFSATVPEEVRQ 180
Query: 580 ----VLKREHTYIDTVGLGSVETPVKVSKYNI 607
LKR+H +I+TV G+ +T KV + ++
Sbjct: 181 ICHAALKRDHEFINTVEEGTEDTHSKVRQMHV 212
>gi|168051595|ref|XP_001778239.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670336|gb|EDQ56906.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 480
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 161/242 (66%), Gaps = 9/242 (3%)
Query: 375 ILSQKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
+L RFD ISPL++KAL AG+ MT VQ TL L+G D + +AKTGTGK++AF
Sbjct: 8 VLVCDRFDNFKISPLSLKALHEVAGFDTMTVVQNETLPVILKGTDVLARAKTGTGKTVAF 67
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LLPAIE++L+ S + I VL +CPTRELA+Q+AAEA L H +GV ++GG
Sbjct: 68 LLPAIESILREGSRKVKR--NSINVLAICPTRELATQVAAEAKMLTTFHRDLGVQVVIGG 125
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + RL+ PCQILV TPGRLLDHI++ + +L LK+L+LDEAD LLD+GFRK
Sbjct: 126 TNMATESARLQRSPCQILVGTPGRLLDHIQSDRAVRSQLEDLKVLILDEADQLLDMGFRK 185
Query: 554 DVENIVDCLPRRRQSLLFSATMPK------ELVLKREHTYIDTVGLGSVETPVKVSKYNI 607
+ I+ LP RQ+LLFSAT+P E+ LK+ +TYIDTVG +VET +KV + +
Sbjct: 186 SLNGIIKALPTERQTLLFSATVPNEVKSMCEIALKKGYTYIDTVGEDNVETHMKVQQEYL 245
Query: 608 YV 609
V
Sbjct: 246 LV 247
>gi|242095998|ref|XP_002438489.1| hypothetical protein SORBIDRAFT_10g020525 [Sorghum bicolor]
gi|241916712|gb|EER89856.1| hypothetical protein SORBIDRAFT_10g020525 [Sorghum bicolor]
Length = 896
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/198 (55%), Positives = 144/198 (72%), Gaps = 6/198 (3%)
Query: 416 GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA 475
GKD + KAKTGTGK++AFLLPAIE V K PPI V+++CPTRELA Q AAEA
Sbjct: 492 GKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPVDRDLKRPPISVVVVCPTRELADQAAAEA 551
Query: 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535
LLK H IGV ++GGTR ++Q+R+ ++PCQILVATPGRL DH+EN G + RLMG+
Sbjct: 552 NKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATPGRLRDHMENTPGFATRLMGV 611
Query: 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYID 589
K+L+LDEAD LLD+GFR D+E IV LP++RQ+LLFSAT+P E + +KR+ +++
Sbjct: 612 KVLILDEADRLLDMGFRSDIEKIVAALPKQRQTLLFSATVPDEVRQVCHIAMKRDLEFVN 671
Query: 590 TVGLGSVETPVKVSKYNI 607
TV GS ET +V + ++
Sbjct: 672 TVQEGSEETHSQVKQMHL 689
>gi|302786768|ref|XP_002975155.1| hypothetical protein SELMODRAFT_174634 [Selaginella moellendorffii]
gi|300157314|gb|EFJ23940.1| hypothetical protein SELMODRAFT_174634 [Selaginella moellendorffii]
Length = 440
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 142/197 (72%), Gaps = 7/197 (3%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
MT VQEATL L+G+D + KAKTGTGK+IAFLLP IE +L A+ ++ T PI L++
Sbjct: 1 MTMVQEATLPLILKGEDVLAKAKTGTGKTIAFLLPTIETIL-ASKNAQTYHENPIRALVI 59
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
CPTRELA Q A EA L+K H+ +G T +GG ++ ++++ PCQILV TPGRLLDH
Sbjct: 60 CPTRELAMQAAVEAQTLMKFHNELGAQTAIGGNSSVMEAKKIKLQPCQILVGTPGRLLDH 119
Query: 522 IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE--- 578
I+N G + +L +K+L+LDEAD LLD+GFR+++ I+ LP++RQ+LLFSAT+PKE
Sbjct: 120 IQNARGFADQLKSVKILILDEADTLLDMGFRQNLTEILKALPKKRQTLLFSATIPKEVHS 179
Query: 579 ---LVLKREHTYIDTVG 592
L LK +H ++DTVG
Sbjct: 180 ISQLALKPDHKFVDTVG 196
>gi|302791587|ref|XP_002977560.1| hypothetical protein SELMODRAFT_176291 [Selaginella moellendorffii]
gi|300154930|gb|EFJ21564.1| hypothetical protein SELMODRAFT_176291 [Selaginella moellendorffii]
Length = 440
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 142/197 (72%), Gaps = 7/197 (3%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
MT VQEATL L+G+D + KAKTGTGK+IAFLLP IE +L A+ ++ T PI L++
Sbjct: 1 MTMVQEATLPLILKGEDVLAKAKTGTGKTIAFLLPTIETIL-ASKNAQTYHENPIRALVI 59
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
CPTRELA Q A EA L+K H+ +G T +GG ++ ++++ PCQILV TPGRLLDH
Sbjct: 60 CPTRELAMQAAVEAQTLMKFHNELGAQTAIGGNSSVMEAKKIKLQPCQILVGTPGRLLDH 119
Query: 522 IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE--- 578
I+N G + +L +K+L+LDEAD LLD+GFR+++ I+ LP++RQ+LLFSAT+PKE
Sbjct: 120 IQNARGFADQLKSVKILILDEADTLLDMGFRQNLTEILKALPKKRQTLLFSATIPKEVHS 179
Query: 579 ---LVLKREHTYIDTVG 592
L LK +H ++DTVG
Sbjct: 180 ISQLALKPDHKFVDTVG 196
>gi|307103390|gb|EFN51650.1| hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis]
Length = 600
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 136/197 (69%), Gaps = 13/197 (6%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
+T VQEATL A L G D + +AKTGTGK++AFL+PA+EA+ +A S + I VL+L
Sbjct: 93 LTSVQEATLPAVLNGGDVMARAKTGTGKTMAFLIPAVEALCRAPPRSGSG----ISVLVL 148
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
PTRELASQIA EA ALL+ H + GGT ++ RL C +LVATPGRL+DH
Sbjct: 149 SPTRELASQIAKEAEALLRFHP-YKAQVVYGGTNINSERNRLAGR-CDVLVATPGRLIDH 206
Query: 522 IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE--- 578
+EN SGL+ L G++ LVLDEAD LL++GFR +E I+ LP+ RQ+LLFSATMP+
Sbjct: 207 LEN-SGLAATLQGIRTLVLDEADQLLEMGFRPAIEKILSFLPKSRQTLLFSATMPQAVQQ 265
Query: 579 ---LVLKREHTYIDTVG 592
L LK++H +IDT+G
Sbjct: 266 VAGLALKKQHAFIDTIG 282
>gi|218188671|gb|EEC71098.1| hypothetical protein OsI_02882 [Oryza sativa Indica Group]
Length = 254
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 136/204 (66%), Gaps = 30/204 (14%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
LS+ RFD+C +SPL++KA+ AGY +MT+VQEATL L+G+D + KA+ G K + F
Sbjct: 71 LSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLPIILQGEDVLAKARQGQEKLLPF-- 128
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
AIE + ST P I +L++CPTRELA+Q+AAEA LLK H +GV
Sbjct: 129 -AIELL------STLPRSPSINLLVICPTRELANQVAAEARKLLKYHRSLGV-------- 173
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
QILVATPGRL DH+EN G S R+ G+K+LVLDEAD LLD+GFR+D+
Sbjct: 174 -------------QILVATPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDI 220
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E I+ +P+ RQ+LLFSAT+P+E+
Sbjct: 221 EKIIAFIPKERQTLLFSATVPEEV 244
>gi|440803766|gb|ELR24649.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 616
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 118/284 (41%), Positives = 157/284 (55%), Gaps = 25/284 (8%)
Query: 371 EEEPILSQKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTG 428
E +P +++ F I +++AL AG+ MT+VQEA + + GKD + KA+TGTG
Sbjct: 127 ESKPFMTKTTFASMSNLICRESLQALQQAGFTYMTQVQEAAIPIAVTGKDLIAKARTGTG 186
Query: 429 KSIAFLLPAIEAVLKATSSSTTQLVPP--IYVLILCPTRELASQIAAEAIALLKNHDGIG 486
K++ FL+P+IE L A S PP I +L++ PTRELA Q EA LLK H
Sbjct: 187 KTLGFLMPSIER-LHAKKYSRPLFTPPGKIAILVISPTRELAMQTMKEAQMLLKQHR-YR 244
Query: 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
++GGT K +QR L ILVATPGRLLDHI+N G+ L + +LVLDEAD L
Sbjct: 245 AQCVIGGTNIKSEQRNLNQGGVDILVATPGRLLDHIQNSRGVRELLDSVSVLVLDEADKL 304
Query: 547 LDLGFRKDVENIVDCLP--RRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVET 598
L++GF+KD++ IV LP RQ+LLFSATMP +L ++ H IDTVG
Sbjct: 305 LEMGFKKDIDTIVSYLPPTGHRQTLLFSATMPDQLAQLVRNIIAPTHQTIDTVGDDQTNV 364
Query: 599 PVKVSKYNIYVFVLVLSIKIQA----------FYIICFVYTISM 632
VK +Y I F + I Q + II F T M
Sbjct: 365 QVK-QEYVIAPFKDQIPIFYQMVREHMASERDYKIIAFFVTARM 407
>gi|3776031|emb|CAA09216.1| RNA helicase [Arabidopsis thaliana]
Length = 295
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 118/155 (76%), Gaps = 6/155 (3%)
Query: 459 LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL 518
L++CPTRELA+Q A EA LLK H IGV ++GGTR ++Q+R++++PCQILVATPGRL
Sbjct: 3 LVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRL 62
Query: 519 LDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE 578
DHIEN G + RL G+K+LVLDEADHLLD+GFRKD+E I+ +P+ RQ+ LFSAT+P+E
Sbjct: 63 KDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEE 122
Query: 579 ------LVLKREHTYIDTVGLGSVETPVKVSKYNI 607
+ L+R+H +++ V G++ET +V + ++
Sbjct: 123 VRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHM 157
>gi|301117296|ref|XP_002906376.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107725|gb|EEY65777.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 590
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 156/273 (57%), Gaps = 25/273 (9%)
Query: 376 LSQKRFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
LS F IS T +A+ Y+++T VQ T +EGKD + KAKTG GK+IAFL
Sbjct: 89 LSDVLFASLDISAKTKRAIVDDLKYVRLTNVQNETFPLIVEGKDVLAKAKTGNGKTIAFL 148
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP IE ++K S I L + PTRELA QIA EA L K HD V VGG
Sbjct: 149 LPVIENMVKEGRRSGV-----IPTLAISPTRELALQIATEAKRLTKYHD-FNVACFVGGA 202
Query: 495 RFKVDQRRLESD-PCQILVATPGRLLDHIENKSG-LSVRLMGLKMLVLDEADHLLDLGFR 552
K D+R L S P ILVATPGRL+DH++ +G ++ RL +L+LDEAD LLD+GFR
Sbjct: 203 NIKKDERALTSSTPIDILVATPGRLVDHLKQNTGKIANRLGKASVLILDEADRLLDMGFR 262
Query: 553 KDVENIVDCLPRRRQSLLFSATMP------KELVLKREHTYIDTVGLGSVETPVKVSKYN 606
DV I+ LP+ RQ+LLFSAT+P K++ L+++++++DT+ +T V+ +
Sbjct: 263 PDVMRIIGYLPKERQTLLFSATLPASTEELKQVALRKDYSFVDTIDENEADTNVQTEQEY 322
Query: 607 IYV----------FVLVLSIKIQAFYIICFVYT 629
I VL +K+ A+ ++ F T
Sbjct: 323 IVCKMGEVIPMVERVLAEHMKLAAYKVMLFFPT 355
>gi|348688326|gb|EGZ28140.1| hypothetical protein PHYSODRAFT_343735 [Phytophthora sojae]
Length = 588
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 113/275 (41%), Positives = 158/275 (57%), Gaps = 29/275 (10%)
Query: 376 LSQKRFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
LS F IS T +A+ Y ++T VQ T ++GKD + KAKTG GK+IAFL
Sbjct: 84 LSDVLFASLDISAKTKRAIVEDLKYERLTNVQNETFPLIVDGKDVLAKAKTGNGKTIAFL 143
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP IE ++K S I L + PTRELA QIA EA L K HD + V VGG
Sbjct: 144 LPVIENMVKEGRRSGV-----IPTLAISPTRELALQIATEAKRLTKFHD-LKVACFVGGA 197
Query: 495 RFKVDQRRL-ESDPCQILVATPGRLLDHIENKSG-LSVRLMGLKMLVLDEADHLLDLGFR 552
K D+R L SDP ILVATPGRL+DH++ +G ++ RL +L+LDEAD LLD+GFR
Sbjct: 198 NIKKDERTLTSSDPIDILVATPGRLVDHLKQNTGKIADRLGKASVLILDEADRLLDMGFR 257
Query: 553 KDVENIVDCLPRRRQSLLFSATMP------KELVLKREHTYIDTVGLGSVETPVKVSKYN 606
DV I+ LP+ RQ+LLFSAT+P K++ L+++++++DT+ +T V+ +
Sbjct: 258 PDVMRIIGYLPKERQTLLFSATLPASTEELKQVALRKDYSFVDTIDENEADTNVQTEQE- 316
Query: 607 IYVF------------VLVLSIKIQAFYIICFVYT 629
YV +L +K+ A+ ++ F T
Sbjct: 317 -YVVCKMEEVIPMVERILAAHMKLPAYKVMLFFPT 350
>gi|412990618|emb|CCO17990.1| predicted protein [Bathycoccus prasinos]
Length = 502
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 142/232 (61%), Gaps = 13/232 (5%)
Query: 381 FDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
F G+S +++A+T + T VQ+ TL +G D + +AKTG+GK++ F LP+IE
Sbjct: 3 FASMGLSKQSMRAITEVCKFTHATAVQDQTLPHITKGVDVLARAKTGSGKTVGFTLPSIE 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++K + + VLI+ PTRELASQI EA LL H+ G + GGT D
Sbjct: 63 LLMKNPETRKGD----VSVLIVSPTRELASQIHVEANQLLTFHE-YGAQVVFGGTNIGTD 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++RL + C LVATPGRL+DH+EN+ GL R+ L++LVLDEAD LL++GFR +E I+
Sbjct: 118 KKRLRENRCDFLVATPGRLIDHLENE-GLRERMSNLRVLVLDEADQLLEMGFRPSIEKIL 176
Query: 560 DCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKY 605
LPR RQ+LLFSAT+P + + H YID VG + T +V+++
Sbjct: 177 SYLPRNRQTLLFSATVPDAVKQIAANAMSDNHVYIDCVGDEATATNSQVAQW 228
>gi|255089893|ref|XP_002506868.1| predicted protein [Micromonas sp. RCC299]
gi|226522141|gb|ACO68126.1| predicted protein [Micromonas sp. RCC299]
Length = 486
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 137/214 (64%), Gaps = 12/214 (5%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY T VQ+ TL L+G D + +AKTG+GK+IAFL+P+IE +L++ + +
Sbjct: 9 GYTHATAVQDQTLPPILKGLDVLARAKTGSGKTIAFLVPSIETLLRSPAGRAGD----VS 64
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
VL+L PTRELASQI E++ LLK H + + GGT K ++ R+ S C LVATPGR
Sbjct: 65 VLVLSPTRELASQIHEESLKLLKFH-ALKSQVVFGGTNIKSERSRMNSQRCDFLVATPGR 123
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
L+DH E SGL R LK+LVLDEAD LL++GF+ ++ I+ +PR+RQ+LLFSAT+P
Sbjct: 124 LIDHFET-SGLQPRCQNLKVLVLDEADQLLEMGFKPSIDKILGFIPRQRQTLLFSATVPN 182
Query: 578 EL------VLKREHTYIDTVGLGSVETPVKVSKY 605
++ L+ + Y+D VG T +V+++
Sbjct: 183 QVKQIAANALRPGYAYVDCVGEEDSATNTQVTQW 216
>gi|384245121|gb|EIE18616.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 558
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 138/226 (61%), Gaps = 15/226 (6%)
Query: 376 LSQKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
L++ F +S T++ +T GY T+VQ TL A L G D V KAKTGTGK++AFL
Sbjct: 82 LTEATFASFELSAATLRGITEVMGYTNCTKVQAETLPATLRGLDVVCKAKTGTGKTLAFL 141
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+P IE +L+A + I +L++ PTRELA+QIA EA L K H + V + GGT
Sbjct: 142 IPGIERMLEAPAGRGK-----IAMLVISPTRELAAQIAEEAKQLTK-HQNLAVQVMFGGT 195
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
D L+ +LVATPGRLLDH++N L L L+MLVLDEAD LLD+GFR++
Sbjct: 196 NMNRDITDLQRRVPDVLVATPGRLLDHLQNTGTLPPMLSNLRMLVLDEADRLLDMGFRQE 255
Query: 555 VENIVDCLPRR--RQSLLFSATMPKE------LVLKREHTYIDTVG 592
+E +V LP + RQ++LFSAT P + L+ E+ +DTVG
Sbjct: 256 IEKLVRMLPPKNGRQNMLFSATYPSNIRELAGIALRPEYQVVDTVG 301
>gi|308807707|ref|XP_003081164.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus
tauri]
gi|116059626|emb|CAL55333.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus
tauri]
Length = 2729
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 142/235 (60%), Gaps = 13/235 (5%)
Query: 377 SQKRFDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
S F G++ + +A+ G+ T VQ+ATL ++G D + +AKTG+GK++ FLL
Sbjct: 2199 STAAFANMGLTEASARAIRDVMGFTHATSVQDATLPHIMQGLDVLARAKTGSGKTVGFLL 2258
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE + +A + + L++ PTRELASQI EA +LL H + GGT
Sbjct: 2259 PAIERLARAGAPQRGN----VSCLVISPTRELASQIGEEAKSLLSFHP-FKCQVVFGGTN 2313
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+++RL+++P + L+ATPGRL+DH E+ L+ L +LVLDEAD LLD+GFR +
Sbjct: 2314 INSERKRLKTEPVEFLIATPGRLIDHFES-GDLARACQNLDVLVLDEADQLLDMGFRPSL 2372
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSK 604
E I+ LP +RQ+LLFSAT+PK + L+ H YID VG + T ++V +
Sbjct: 2373 EKILSFLPNQRQTLLFSATVPKTVHQIAANALRPGHQYIDCVGEDAPATNLQVKQ 2427
>gi|303277195|ref|XP_003057891.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460548|gb|EEH57842.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 446
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 125/196 (63%), Gaps = 11/196 (5%)
Query: 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462
T VQ+ TL ++GKD + +AKTG+GK+I FLLPAIEA+ A + P VL+L
Sbjct: 5 TAVQDQTLPHIMDGKDVLARAKTGSGKTIGFLLPAIEAL--ARDGGAARRGRP-RVLVLS 61
Query: 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI 522
PTRELA+QI EA ALL HDG+G + GGT F D R L C ILVATPGRL+ H+
Sbjct: 62 PTRELATQILDEAKALLTFHDGVGAQVVFGGTNFNSDLRNLRDKRCDILVATPGRLIQHL 121
Query: 523 ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV-- 580
E+ G L + +LVLDEAD LLD+GF+ +E I+ +P+ RQSL+FSAT+ E+
Sbjct: 122 ED--GDRDLLRDVNVLVLDEADRLLDMGFKPSIEKILRSVPQDRQSLMFSATVSDEIKKI 179
Query: 581 ----LKREHTYIDTVG 592
L+ H Y+D VG
Sbjct: 180 AAAGLRPGHVYVDCVG 195
>gi|299117615|emb|CBN75457.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 610
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 138/224 (61%), Gaps = 16/224 (7%)
Query: 378 QKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+ +F + +S T +A+ GY +T+VQ ++ L G D + KAKTGTGK+++FL P
Sbjct: 143 ESKFAQLPLSAPTQRAIAEVLGYATLTKVQNDSIPPALAGHDVLAKAKTGTGKTLSFLFP 202
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
AIE V + + I+VLI+ PTRELA QIA EA +L HD + ++ +VGGT
Sbjct: 203 AIEGVARTPRAQRKG----IWVLIISPTRELAQQIADEANQVLTFHD-MSLICVVGGTNI 257
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
K D R P I+VATPGRL DH++N +GL+ + GL L+ DEAD LL++GFR +E
Sbjct: 258 KADIRGFRDRP-DIVVATPGRLNDHLDN-NGLAKDMAGLSHLIFDEADQLLEMGFRPAIE 315
Query: 557 NIVDCLP--RRRQSLLFSATMP------KELVLKREHTYIDTVG 592
I+ +P R RQ+LLFSATMP +L LK + ++D VG
Sbjct: 316 AILRYMPHSRDRQTLLFSATMPGDVRKIAQLALKERYEFVDCVG 359
>gi|406698562|gb|EKD01797.1| hypothetical protein A1Q2_03860 [Trichosporon asahii var. asahii
CBS 8904]
Length = 633
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 129/199 (64%), Gaps = 17/199 (8%)
Query: 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462
T VQ ATL A LEG D + +AKTGTGK++AFL+P+I+ +L A + +L+L
Sbjct: 95 TEVQAATLPAILEGHDVLAQAKTGTGKTLAFLVPSIQRLLLAPLPDRSL----TSILVLS 150
Query: 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI 522
PTRELASQIA A+ K +GV +VGGT D +RL+++ ILVATPGRLLD I
Sbjct: 151 PTRELASQIADAALTFTKGR--VGVQCVVGGTNINTDVKRLKTERADILVATPGRLLDLI 208
Query: 523 ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPK- 577
EN G+ RL ++ LVLDEAD LLD GFR+++ I+D LP R RQ+LLFSAT+P+
Sbjct: 209 ENY-GVGSRLSQIRTLVLDEADRLLDQGFRRELVKILDALPDRKAVPRQTLLFSATLPEG 267
Query: 578 -----ELVLKREHTYIDTV 591
+ LK +H +I T+
Sbjct: 268 VHSISSIALKPDHKFITTL 286
>gi|401886609|gb|EJT50636.1| hypothetical protein A1Q1_08188 [Trichosporon asahii var. asahii
CBS 2479]
Length = 569
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 129/199 (64%), Gaps = 17/199 (8%)
Query: 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462
T VQ ATL A LEG D + +AKTGTGK++AFL+P+I+ +L A + +L+L
Sbjct: 95 TEVQAATLPAILEGHDVLAQAKTGTGKTLAFLVPSIQRLLLAPLPDRSL----TSILVLS 150
Query: 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI 522
PTRELASQIA A+ K +GV +VGGT D +RL+++ ILVATPGRLLD I
Sbjct: 151 PTRELASQIADAALTFTKGR--VGVQCVVGGTNINTDVKRLKTERADILVATPGRLLDLI 208
Query: 523 ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPK- 577
EN G+ RL ++ LVLDEAD LLD GFR+++ I+D LP R RQ+LLFSAT+P+
Sbjct: 209 ENY-GVGSRLSQIRTLVLDEADRLLDQGFRRELVKILDALPDRKAVPRQTLLFSATLPEG 267
Query: 578 -----ELVLKREHTYIDTV 591
+ LK +H +I T+
Sbjct: 268 VHSISSIALKPDHKFITTL 286
>gi|71024463|ref|XP_762461.1| hypothetical protein UM06314.1 [Ustilago maydis 521]
gi|46097710|gb|EAK82943.1| hypothetical protein UM06314.1 [Ustilago maydis 521]
Length = 647
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 133/213 (62%), Gaps = 21/213 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453
L+A + M+ VQ ATLS L GKD + +AKTGTGK++AFL+P+I +
Sbjct: 128 LSAIPFPTMSAVQAATLSTALSGKDVLAQAKTGTGKTLAFLIPSIHKLCALPKP------ 181
Query: 454 PP---IYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTRFKVDQRRLESDPCQ 509
PP I VL+L PTRELA QI EA LL N G GV +VGGT +++RL+ D
Sbjct: 182 PPQTSISVLVLSPTRELALQIEKEAHMLLANLQGTFGVQHVVGGTNIGAERKRLQKDRKD 241
Query: 510 ILVATPGRLLDHI-ENKSGLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCLP--- 563
IL+ATPGRLLDH+ N SGL +R L++LVLDEAD +LD+GFR ++E I+ LP
Sbjct: 242 ILIATPGRLLDHLSSNNSGLDLRRACQNLRVLVLDEADRMLDMGFRNELEKILKMLPDPV 301
Query: 564 -RRRQSLLFSATMP---KELV-LKREHTYIDTV 591
RQSL FSAT+P E+ L+ +H +I T+
Sbjct: 302 ASERQSLFFSATIPSFVHEVAKLRPDHAFISTL 334
>gi|238009564|gb|ACR35817.1| unknown [Zea mays]
Length = 215
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 112/150 (74%), Gaps = 6/150 (4%)
Query: 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLD 520
+CPTRELA+Q+AAEA LLK H +GV ++GGTR +QR ++++PCQILVATPGRL D
Sbjct: 1 MCPTRELANQLAAEARKLLKYHRSLGVQVVIGGTRLPQEQRSMQANPCQILVATPGRLKD 60
Query: 521 HIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE-- 578
H+EN G S R+ G+K+LVLDEAD LLD+GFR+D+E I+ +P+ RQ+LLFSAT+ +E
Sbjct: 61 HLENTPGFSTRIRGVKVLVLDEADRLLDMGFRRDIEKIITFIPKDRQTLLFSATVSEEIH 120
Query: 579 ----LVLKREHTYIDTVGLGSVETPVKVSK 604
L +++++ +I+ V G ET +V++
Sbjct: 121 QISHLAMRKDYDFINAVQEGDEETHAQVNQ 150
>gi|328855350|gb|EGG04477.1| hypothetical protein MELLADRAFT_37461 [Melampsora larici-populina
98AG31]
Length = 521
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 147/237 (62%), Gaps = 24/237 (10%)
Query: 368 EKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT 427
++ E + + S +RF + +S +KA+ + M+ +Q ATL A L G+D + +AKTGT
Sbjct: 4 DQDEPQSLGSTRRFADTALS-TGLKAVIP--FETMSEIQAATLDAVLGGQDVLAQAKTGT 60
Query: 428 GKSIAFLLPAIEAVLKATSSSTTQLVPP---IYVLILCPTRELASQIAAEAIALLKNHDG 484
GK++AFL+PA+E + T +PP I +LI+ PTRELA+QIA E LL+
Sbjct: 61 GKTLAFLVPAVEKLRNLTP------MPPNRQISILIISPTRELAAQIARECQPLLEG-TS 113
Query: 485 IGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544
GV +VGGT + +L+++ C +LVATPGRL DH+ N+ GL +L L+ +LDEAD
Sbjct: 114 FGVQCVVGGTNINTEINKLKNNRCDVLVATPGRLKDHLLNQ-GLQGQLRQLRFFILDEAD 172
Query: 545 HLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------VLKREHTYIDTV 591
LLD+GF+ D++ I+ LP R RQS+LFSAT+P E+ VL H +I T+
Sbjct: 173 RLLDMGFKPDIDQILQTLPDRRSVPRQSMLFSATIPAEVMKVKNAVLLPNHAHISTL 229
>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
ES-1]
Length = 450
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 124/199 (62%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + ++P +KALT AGY+ T +Q + LEG D + A+TGTGK+ AF LP ++
Sbjct: 6 FVDLKLAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPMLQK 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+ST+ P+ LIL PTRELA Q+ E++ H + L + GG K
Sbjct: 66 LLPHASASTSPAKHPVRALILVPTRELAVQV-EESVKAYAKHTNLRSLVVYGGVDIKTQT 124
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L++ +ILVATPGRLLDHIE K +V L ++MLVLDEAD +LD+GF ++ I+
Sbjct: 125 PHLKTG-VEILVATPGRLLDHIEQK---TVLLNQVQMLVLDEADRMLDMGFMPALKRILA 180
Query: 561 CLPRRRQSLLFSATMPKEL 579
LPR+RQSL+FSAT E+
Sbjct: 181 LLPRQRQSLMFSATFSNEI 199
>gi|389739541|gb|EIM80734.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1206
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 141/241 (58%), Gaps = 19/241 (7%)
Query: 391 IKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
I A+T GY MT VQEAT+ L+GKD + KAKTGTGK+IAFL+P+I+A+L+ T
Sbjct: 106 ISAITDGLGYQTMTAVQEATIRPLLDGKDCLAKAKTGTGKTIAFLVPSIQAILQNT--DV 163
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR-LESDPC 508
T+ + LI+ PTRELA QIA EA ALL N+ I V T +GGT K + L +
Sbjct: 164 TKNATHVRTLIISPTRELAMQIATEAKALLTNYPKIRVQTFIGGTNMKTETNSFLGHNTP 223
Query: 509 QILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP----R 564
QI+VATPGRL DH+ + + R + L LDEAD LL+ GF+ +++ I LP
Sbjct: 224 QIVVATPGRLQDHLSSNPEIKARFQAVDFLTLDEADRLLEQGFKSEIDQIQSHLPSPSQH 283
Query: 565 RRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKI 618
RQ+L FSAT+P + +L + I TV V+T ++ + FVL SI+
Sbjct: 284 PRQTLFFSATVPPRVTALCQQLLAPGYRTISTVSEDDVDTHSRIPQ-----FVLSASIED 338
Query: 619 Q 619
Q
Sbjct: 339 Q 339
>gi|145350269|ref|XP_001419535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579767|gb|ABO97828.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 545
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 137/227 (60%), Gaps = 13/227 (5%)
Query: 385 GISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443
G++ +++A+ G+ T VQ++TL + G D + +AKTG+GK++ FLLPAIE + K
Sbjct: 2 GLTEASMRAIHEVMGFTHATAVQDSTLPHIMRGLDVLARAKTGSGKTVGFLLPAIERLAK 61
Query: 444 ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
+ + L++ PTRELASQI EA +LL H + GGT +++RL
Sbjct: 62 QGAPRKGD----VSCLVISPTRELASQIGEEAKSLLTYHP-FNCQVVFGGTNINSERKRL 116
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
S + LVATPGRL+DH E+ S L+ L +LVLDEAD LLD+GFR +E I+ LP
Sbjct: 117 TSQGVEFLVATPGRLIDHFES-SNLARACQNLDVLVLDEADQLLDMGFRPSLEKILSYLP 175
Query: 564 RRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSK 604
+RQ+LLFSAT+PK + L+ H YID VG + T ++V +
Sbjct: 176 TQRQTLLFSATVPKTVHQIAANALRPGHQYIDCVGDDAPATNLQVKQ 222
>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
JR1]
Length = 527
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 129/200 (64%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E ISP T++A+ G+ + T +Q +T+ A L+G+D +A+TGTGK+ AF +PAIE
Sbjct: 7 FQELNISPKTLRAIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAIER 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T S TQ VL+L PTRELA Q A E L K+H GI +L + GG
Sbjct: 67 V--DTGSRETQ------VLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQF 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ QI+V TPGR+LDH++ + + +K++VLDEAD +LD+GFR+D+E I+D
Sbjct: 119 RALQRG-VQIVVGTPGRVLDHLDRGT---LSFGAVKVVVLDEADQMLDMGFREDIEKILD 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
PR RQ++LFSAT+PK ++
Sbjct: 175 DTPRDRQTILFSATLPKPIL 194
>gi|397634052|gb|EJK71256.1| hypothetical protein THAOC_07324 [Thalassiosira oceanica]
Length = 580
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 112/297 (37%), Positives = 157/297 (52%), Gaps = 29/297 (9%)
Query: 351 IRKEISKNKLNGNGEKKEKREEEPI-----LSQKRFDECG-ISPLTIKALTA-AGYIQMT 403
+R I++ K + E R+ + + L+ K F +C I P + +AL G MT
Sbjct: 56 LRPAITEKKRAERKARIESRQADALDDPTLLTDKSFAKCKLIHPSSKRALVEDLGLQSMT 115
Query: 404 RVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP--PIYVLIL 461
VQ T+ A L GKD + +AKTGTGK+ AFL+PA+E + VP I LIL
Sbjct: 116 EVQAKTIHAALAGKDILARAKTGTGKTFAFLIPAVERI-----KMNPTYVPGRSICCLIL 170
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
PTRELA QI +A +L +H + V + GGT+ D ILVATPGRLLDH
Sbjct: 171 APTRELAIQIGEQASSLTAHHSDVSVQVMYGGTKMARDMNAFNRRLPSILVATPGRLLDH 230
Query: 522 IENKSGLSVRLMG------LKMLVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSA 573
+ S L R G ++VLDE D LLDLGFR+++E I+ LPR +RQ++LFSA
Sbjct: 231 LRETS-LRGRKFGDDIMAQTDIVVLDEIDRLLDLGFRREIERILSYLPRKAKRQTMLFSA 289
Query: 574 TMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKIQAFYII 624
T+PK L L + +D V GS+ +P + Y + +S +Q+ Y +
Sbjct: 290 TIPKGLKRIMQESLNDDFVEVDCVNDGSMSSPTNIRVSQSYTILPCMSSFLQSTYAV 346
>gi|303275900|ref|XP_003057244.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461596|gb|EEH58889.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1116
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 151/264 (57%), Gaps = 20/264 (7%)
Query: 377 SQKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
S F G+S +++A++ + T VQ+ TL ++G D + +AKTG+GK++AFLL
Sbjct: 94 STTSFAALGLSAPSLRAISEVMKFTHATSVQDQTLPPIMKGLDTLARAKTGSGKTVAFLL 153
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P IE + + + V L+L PTRELASQI E+ +LL H+ + GGT
Sbjct: 154 PTIELLHRTGPAPGNGSV---SCLVLSPTRELASQIHEESKSLLAFHN-FKSHVVFGGTN 209
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++ R+ C LVATPGRL+DH E SGL R LK+LVLDEAD LL++GF+ V
Sbjct: 210 INSERGRMNGGRCDFLVATPGRLIDHFET-SGLQPRCANLKVLVLDEADQLLEMGFKPAV 268
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
+ I+ +PR RQ+LLFSAT+P+++ L+ + Y+D VG T ++V ++
Sbjct: 269 DRILSFIPRERQTLLFSATVPQQVRNIAANALRPGYAYVDCVGEEDSATNLQVKQW---- 324
Query: 610 FVLVLSIKIQAFYIICFVYTISMY 633
L+I ++I V I+M+
Sbjct: 325 ----LTIAPLDDHLILLVQLINMH 344
>gi|443894255|dbj|GAC71604.1| hypothetical protein PANT_4d00026 [Pseudozyma antarctica T-34]
Length = 839
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 21/213 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLV 453
L+A + M+ VQ ATLS L G+D + +AKTGTGK++AFL+P+I + +
Sbjct: 90 LSAIPFPTMSAVQAATLSTALSGRDVLAQAKTGTGKTLAFLIPSIHKLCALPTP------ 143
Query: 454 PP---IYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTRFKVDQRRLESDPCQ 509
PP I VL+L PTRELA QI EA LL N G GV +VGGT +++RL+ D
Sbjct: 144 PPQSSISVLVLSPTRELALQIEKEAHMLLANLQGTFGVQHVVGGTNIGAERKRLQRDRKD 203
Query: 510 ILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCLP--- 563
+L+ATPGRLLDH+ + + GL +R LK+LVLDEAD +LD+GFR ++E I+ LP
Sbjct: 204 LLIATPGRLLDHLSSDAPGLDLRKACQNLKVLVLDEADRMLDMGFRNELEKILKMLPDPV 263
Query: 564 -RRRQSLLFSATMPKELV----LKREHTYIDTV 591
+RQSL FSAT+P + L+ +H +I T+
Sbjct: 264 ASQRQSLFFSATIPSFVHDVAKLRPDHAFISTL 296
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 127/203 (62%), Gaps = 5/203 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
SQ RF + G+SP ++ALT GY+ T +Q + L+G+D + A+TGTGK+ F LP
Sbjct: 63 SQVRFADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALP 122
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+ST+ P+ LIL PTRELA Q+ AE + H + + GG
Sbjct: 123 IIQMLLAHASTSTSPARHPVRALILTPTRELAVQV-AENVKAYAQHTPLRSTVVFGGMDM 181
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
K L++ +I++ATPGRLLDH+E K ++ L ++MLV+DEAD +LD+GF D++
Sbjct: 182 KGQTVILKAG-VEIVIATPGRLLDHVEQK---NISLGQVQMLVMDEADRMLDMGFLPDLQ 237
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
I++ LP +RQ+L+FSAT E+
Sbjct: 238 RIINLLPAKRQNLMFSATFSPEI 260
>gi|392402594|ref|YP_006439206.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390610548|gb|AFM11700.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 473
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 128/202 (63%), Gaps = 13/202 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+SP ++A+T G+ + + +QE + LEG D + +A+TGTGK+ AF +P I
Sbjct: 2 KSFYELGLSPALVQAITDMGFREASPIQEKAIPILLEGHDLIGQAQTGTGKTAAFAIPVI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E K TS+ Q ++LCPTRELA Q+AAE LLK I V T+ GG +
Sbjct: 62 E---KITSAKELQ------AMVLCPTRELAMQVAAEFKKLLKYKKDILVATVYGGQQIGT 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI+V TPGR++DH+ K ++++ +K VLDEAD +L GFR+D+E+I
Sbjct: 113 QFRDLKLKP-QIVVGTPGRVMDHMRRK---TIKMNTVKFFVLDEADEMLAQGFREDIEHI 168
Query: 559 VDCLPRRRQSLLFSATMPKELV 580
+ P+ RQ++LFSATM KE++
Sbjct: 169 LLDAPKERQTVLFSATMSKEIL 190
>gi|348688329|gb|EGZ28143.1| hypothetical protein PHYSODRAFT_468056 [Phytophthora sojae]
Length = 590
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 128/202 (63%), Gaps = 13/202 (6%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY +T VQ+ TL LEG+D + K KTG GK+IAFLLP +E +LK + I
Sbjct: 55 GYEFLTHVQKDTLPLVLEGRDVLAKGKTGNGKTIAFLLPTVERMLKNPRPKHGR----IS 110
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL-ESDPCQILVATPG 516
L++ PTRELA QIA EA+ L H+ + VGG+ D + L +S +LV+TPG
Sbjct: 111 ALVISPTRELAQQIAVEAVKLTDAHN-LHTACFVGGSAVNKDVKLLTQSAGIDVLVSTPG 169
Query: 517 RLLDHIENKSG-LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
RL H+E+ SG + +L L++LVLDEAD LLD+GFR D+ I+ LP+ RQ+LLFSAT+
Sbjct: 170 RLQAHLEDNSGRIRQKLEDLQVLVLDEADRLLDMGFRPDIMRIISHLPKERQTLLFSATL 229
Query: 576 P------KELVLKREHTYIDTV 591
P K++ L+ ++ ++DT+
Sbjct: 230 PTATEELKDVALRDDYAFVDTI 251
>gi|255072363|ref|XP_002499856.1| predicted protein [Micromonas sp. RCC299]
gi|226515118|gb|ACO61114.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 499
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 134/233 (57%), Gaps = 27/233 (11%)
Query: 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP-----IY 457
T VQ+A L + GKD + +AKTG+GK+IAFLLP +E LK T PP I
Sbjct: 1 TEVQDAVLPHIMAGKDVLARAKTGSGKTIAFLLPVLEK-LKRT--------PPERRGGIS 51
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
L+L PTRELA+QI E LL I + GGT + D RL+S+ C ILVATPGR
Sbjct: 52 ALVLSPTRELATQIQEECKQLLTFRRDINAQVVFGGTNIRTDVSRLKSERCDILVATPGR 111
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
L+DH+EN +S RL LV DEAD LLD+GF+ +E I+ +P RQ+LLFSAT+
Sbjct: 112 LIDHLEN-GDVSARLKSCDTLVFDEADRLLDMGFKPAIEKILRHVPAGRQTLLFSATVSP 170
Query: 578 EL------VLKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKIQAFYII 624
E+ L+ H ++D VG T ++V + LV++ ++ F ++
Sbjct: 171 EIQQVAKKSLRSGHVFVDCVGEEESATNLQVKQS------LVVAAQVDQFAVL 217
>gi|388857878|emb|CCF48543.1| related to MSS116-RNA helicase of the DEAD box family,
mitochondrial [Ustilago hordei]
Length = 640
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 133/215 (61%), Gaps = 21/215 (9%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQ 451
+ L+A + M+ VQ ATLS L GKD + +AKTGTGK++AFL+P+I+ +
Sbjct: 114 RLLSAIPFPTMSAVQAATLSTALSGKDVLAQAKTGTGKTLAFLIPSIQKLCALPKP---- 169
Query: 452 LVPP---IYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTRFKVDQRRLESDP 507
PP I VL+L PTRELA QI EA LL N G V +VGGT +++RL+ D
Sbjct: 170 --PPQRSISVLVLSPTRELALQIEKEAQMLLANLQGTFAVQHVVGGTNIGAERKRLQRDR 227
Query: 508 CQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCLP- 563
+L+ATPGRLLDH + + GL +R LK+LVLDEAD +LD+GFR ++E I+ LP
Sbjct: 228 KDLLIATPGRLLDHFASDAPGLDLRKACQNLKVLVLDEADRMLDMGFRNELEKILKMLPD 287
Query: 564 ---RRRQSLLFSATMP---KELV-LKREHTYIDTV 591
RQSL FSAT+P E+ L+ +H +I T+
Sbjct: 288 PISSNRQSLFFSATIPSFVHEVAKLRPDHAFISTL 322
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+ P +KA+ A+GY + T +QE + ++G+D + A+TGTGK+ AF LP +
Sbjct: 18 FTEVGLHPDLLKAVMASGYTKPTPIQEQAMPLIMDGRDIMGAAQTGTGKTAAFTLPLLHR 77
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ +SS + P+ LIL PTRELA Q+ AE++ + + V + GG +
Sbjct: 78 LMPMANSSMSPARHPVRALILAPTRELADQV-AESVKRYSHSSPLRVAVVFGGVDMNAQR 136
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L C++L+ATPGRLLDHIE K +V L + +LVLDEAD +LD+GF D+E IV
Sbjct: 137 DQLRKG-CELLIATPGRLLDHIEQK---NVSLSQVSVLVLDEADRMLDMGFLPDLERIVR 192
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ RQSLLFSAT ++
Sbjct: 193 LLPKPRQSLLFSATFSNDI 211
>gi|373852215|ref|ZP_09595015.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372474444|gb|EHP34454.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 602
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ ++F E G+SP +KA+ G+ + + +Q A + L G+D V ++ TG+GK+ AF L
Sbjct: 1 MESRKFAELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGRDVVGQSSTGSGKTAAFAL 60
Query: 436 PAIEAV---LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
PAIE V LKA + VLILCPTRELA Q+A E L GI + + G
Sbjct: 61 PAIERVDPKLKA-----------VQVLILCPTRELAVQVAEEVGKLAFFKRGIIEVPVYG 109
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G ++ R L + QI++ TPGR++DH+E + ++L LKM++LDE D +LD+GFR
Sbjct: 110 GQSYERQFRALAAG-AQIVIGTPGRVMDHMERGT---LKLDRLKMVILDECDRMLDMGFR 165
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKEL 579
D+E+I+ +P +RQSL FSATMP+E+
Sbjct: 166 DDIEHILKAMPAQRQSLFFSATMPREI 192
>gi|406835858|ref|ZP_11095452.1| DEAD/DEAH box helicase [Schlesneria paludicola DSM 18645]
Length = 583
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 131/204 (64%), Gaps = 12/204 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++QK F E G+SP +KA+ G+ Q + +Q + LEG D + +++TG+GK+ AF +
Sbjct: 1 MTQKLFSELGLSPELLKAIERMGFEQASPIQAEAIPRLLEGHDVIGQSQTGSGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PA+E L ++ Q +L++CPTRELASQ+A E L G+ L + GG
Sbjct: 61 PAVE--LADPTNRAVQ------ILMMCPTRELASQVAEEIAKLAAFKKGVRELPIFGGQS 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ R L++ P QI++ TPGRL+DHI K G +++L +KM+VLDEAD +LD+GFR+D+
Sbjct: 113 YDHQFRGLKAGP-QIVIGTPGRLIDHI--KQG-TLKLNEVKMVVLDEADRMLDMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E I++ +P RQ +LFSAT+P +
Sbjct: 169 ETILESIPTERQIVLFSATVPPPI 192
>gi|391229975|ref|ZP_10266181.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391219636|gb|EIP98056.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 602
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ ++F E G+SP +KA+ G+ + + +Q A + L G+D V ++ TG+GK+ AF L
Sbjct: 1 MESRKFAELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGRDVVGQSSTGSGKTAAFAL 60
Query: 436 PAIEAV---LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
PAIE V LKA + VLILCPTRELA Q+A E L GI + + G
Sbjct: 61 PAIERVDPKLKA-----------VQVLILCPTRELAVQVAEEVGKLAFFKRGIIEVPVYG 109
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G ++ R L + QI++ TPGR++DH+E + ++L L+M++LDE D +LD+GFR
Sbjct: 110 GQSYERQFRALAAG-AQIVIGTPGRVMDHMERST---LKLDQLRMVILDECDRMLDMGFR 165
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKEL 579
D+E+I+ +P +RQSL FSATMP+E+
Sbjct: 166 DDIEHILKAMPAQRQSLFFSATMPREI 192
>gi|295671476|ref|XP_002796285.1| ATP-dependent RNA helicase mss116 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284418|gb|EEH39984.1| ATP-dependent RNA helicase mss116 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 679
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 149/263 (56%), Gaps = 26/263 (9%)
Query: 370 REEEPILSQKRFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKAK 424
+E E +F E +S I+ LT I MT VQ T++A L G D + +AK
Sbjct: 66 KESEAPTEYTQFSELATDGLVSDNVIRVLTNKMNITTMTEVQRMTINATLNGSDVLAQAK 125
Query: 425 TGTGKSIAFLLPAIEAVLK-------ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
TGTGK++AFL+P ++ +LK A ++ + I LI+ PTRELA QIA EA
Sbjct: 126 TGTGKTLAFLIPVVQNILKDQQLAQRARNNRSRSNASDIRALIISPTRELAEQIAVEAKK 185
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSVRLMGLK 536
L+ N I V T VGGTR + R++ + C ILV TPGRL+D + SG+S L
Sbjct: 186 LVSNTSVI-VQTAVGGTRKREGLMRIQHEGCHILVGTPGRLIDIFSDPTSGVSA--PKLS 242
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREHT 586
LVLDEAD LLD+GF D++ + LPRR RQ+L+FSAT+PKE++ +K++ T
Sbjct: 243 ALVLDEADRLLDIGFAPDIQELQSYLPRRQDVDRQTLMFSATVPKEVMAMVRQTMKQDFT 302
Query: 587 YIDTVGLGSVETPVKVSKYNIYV 609
++ TV T + V + +Y+
Sbjct: 303 FVKTVKEDETPTHLAVPQKLVYL 325
>gi|343428954|emb|CBQ72499.1| related to MSS116-RNA helicase of the DEAD box family,
mitochondrial [Sporisorium reilianum SRZ2]
Length = 645
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 134/215 (62%), Gaps = 21/215 (9%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQ 451
+ L+A + M+ VQ ATLS L GKD + +AKTGTGK++AFL+P+I+ +
Sbjct: 111 RLLSAIPFPTMSAVQAATLSTALAGKDVLAQAKTGTGKTLAFLIPSIQKLCALPKP---- 166
Query: 452 LVPP---IYVLILCPTRELASQIAAEAIALLKNHDG-IGVLTLVGGTRFKVDQRRLESDP 507
PP I VL+L PTRELA QI EA LL N G V +VGGT +++RL+ D
Sbjct: 167 --PPQTSISVLVLSPTRELALQIEKEAQMLLANLQGSFSVQHVVGGTNIGAERKRLQRDR 224
Query: 508 CQILVATPGRLLDHIENKS-GLSVR--LMGLKMLVLDEADHLLDLGFRKDVENIVDCLP- 563
+L+ATPGRLLDH+ + + GL +R L++LVLDEAD +LD+GFR ++E I+ LP
Sbjct: 225 KDLLIATPGRLLDHLTSDAPGLDLRKACQNLRVLVLDEADRMLDMGFRNELEKILKMLPD 284
Query: 564 ---RRRQSLLFSATMPKELV----LKREHTYIDTV 591
+RQSL FSAT+P + L+ +H +I T+
Sbjct: 285 PIASQRQSLFFSATIPSFVHDVAKLRPDHAFISTL 319
>gi|378727369|gb|EHY53828.1| DEAD box RNA helicase HelA [Exophiala dermatitidis NIH/UT8656]
Length = 556
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 136/228 (59%), Gaps = 17/228 (7%)
Query: 386 ISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444
++P I LT G+ M VQ ATL L+GKD + +AKTGTGK++AFLLPA++ +LK
Sbjct: 69 LNPTIIDTLTNDFGFDHMMPVQAATLEHLLQGKDCLAQAKTGTGKTLAFLLPAVDTILKN 128
Query: 445 TSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLE 504
+ + LILCPTRELA QIAAEA L++ + + +GGT + + +
Sbjct: 129 RTQR-------LSALILCPTRELALQIAAEAKKLVQRFPQLKIACSIGGTNKTAEAQAIY 181
Query: 505 SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP- 563
C ILVATPGRLLDH+ + + +L L+ LVLDEAD +LD+GF D++ I+ LP
Sbjct: 182 RG-CDILVATPGRLLDHLGEEQ-VQHQLGSLQTLVLDEADRMLDMGFLPDIKKILTYLPD 239
Query: 564 RRRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKY 605
RQS+LFSAT+ + L L ++H +I T+ T +V +Y
Sbjct: 240 LPRQSMLFSATIDDQVRKVAHLFLNKDHEFISTIDPSEANTHERVDQY 287
>gi|379012782|ref|YP_005270594.1| putative RNA helicase [Acetobacterium woodii DSM 1030]
gi|375303571|gb|AFA49705.1| putative RNA helicase [Acetobacterium woodii DSM 1030]
Length = 551
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 131/211 (62%), Gaps = 19/211 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E I+ ++ + G+++MT +QE + + G D + K++TGTGK++AF +PAI
Sbjct: 2 KFTELEINEQLLRGIEEMGFVEMTEIQEQAIPQLMMGGDLIGKSQTGTGKTVAFAIPAI- 60
Query: 440 AVLKATSSSTTQLVPPI---YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
T+L P I VL+LCPTRELA Q++ E +LK G+ VL + GG
Sbjct: 61 ----------TKLDPSIKKVQVLVLCPTRELAVQVSDEFKKVLKYQKGVKVLPIFGGASI 110
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ R L+S QI+V TPGR++DH+ K+ ++L + M+VLDEAD +L++GFR+D+E
Sbjct: 111 ETQIRELKSG-VQIVVGTPGRVMDHMRRKT---LKLSDISMVVLDEADEMLNMGFREDIE 166
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTY 587
I+D + Q++LFSATMPK +LK TY
Sbjct: 167 LILDEIAHEIQTVLFSATMPKP-ILKIAETY 196
>gi|410942641|ref|ZP_11374416.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
gi|410782279|gb|EKR71295.1| DEAD/DEAH box helicase [Leptospira noguchii str. 2006001870]
Length = 537
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 128/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+L T+ + + L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 AIL-------TKGIQGVAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|315056235|ref|XP_003177492.1| ATP-dependent RNA helicase mss116 [Arthroderma gypseum CBS 118893]
gi|311339338|gb|EFQ98540.1| ATP-dependent RNA helicase mss116 [Arthroderma gypseum CBS 118893]
Length = 639
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 168/327 (51%), Gaps = 27/327 (8%)
Query: 315 KMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEP 374
++ +++L K+ ++ R+P+ L DF + + N E ++ EE
Sbjct: 19 RLPVTSTLAKHSLR---RLPIAPLLTSRDFHVTPQF---RVPAGTANAGIEVEDAGEEAL 72
Query: 375 ILSQKRFDECGI-SPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
I E G+ I A+T G MT VQ T++ ++G D + +AKTGTGK++A
Sbjct: 73 ITEFAELGEKGVVDQRLINAITKGMGLKTMTDVQAQTINESIQGTDMIAQAKTGTGKTVA 132
Query: 433 FLLPAIEAVLKATSSSTTQ--LVPP--IYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
FLLP I +L+ + + P I +++ PTRELA QIA EA + + G+ V
Sbjct: 133 FLLPVIHRILQDPTIGNLRRSFTSPQDIRAVVISPTRELAEQIAVEAQKITRG-SGLKVQ 191
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
T VGGTR + RL+ + C ILV TPGRL+D + + V L+ VLDEAD LLD
Sbjct: 192 TAVGGTRKREGLMRLQREGCHILVGTPGRLMDLFSDPAS-GVAAPKLQAFVLDEADRLLD 250
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------VLKREHTYIDTVGLGSVET 598
+GF D+E I P R RQ+L+FSAT+P + +LK + T+++TVG ET
Sbjct: 251 IGFAPDIERIQSFFPSRSQVDRQTLMFSATIPNSVKGLARSMLKPDFTFVNTVG---DET 307
Query: 599 PVKVSKYNIYVFVLVLSIKIQAFYIIC 625
P + VF+ ++ A + I
Sbjct: 308 PTHLRVPQRAVFLRGFENQLPALFEIA 334
>gi|219111399|ref|XP_002177451.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411986|gb|EEC51914.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 587
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 144/247 (58%), Gaps = 27/247 (10%)
Query: 366 KKEKREEEP-ILSQKRFDE-CGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVK 422
+ E+ ++P +L+ RFDE + P T +A+T G+ QMT +Q T +A LEGK + +
Sbjct: 105 RHEQATQDPTLLTTYRFDERADLHPGTKRAVTEVMGFQQMTEIQYKTFNAALEGKSVLGR 164
Query: 423 AKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A+TGTGK++AFLLPAIE L S + + +LI+ PTRELA QI +EA LL
Sbjct: 165 ARTGTGKTLAFLLPAIER-LMFMDVSVYRADRNVGILIVAPTRELAMQIGSEASRLLTFE 223
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK------ 536
VLTL GGT+ + D L ILVATPGRLLDH+E+ RL G K
Sbjct: 224 SKWSVLTLYGGTKIQRDVALLNRQIPTILVATPGRLLDHLED-----TRLRGRKFSDVVG 278
Query: 537 ---MLVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMPKEL------VLKREH 585
++VLDE D LL+ GF KD I+ LPR +RQ+LLFSAT+P L +L ++
Sbjct: 279 ETPIVVLDETDRLLE-GFAKDTRRILSFLPRPEKRQTLLFSATVPTRLKRILDEILPADY 337
Query: 586 TYIDTVG 592
+D VG
Sbjct: 338 VEVDCVG 344
>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 598
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 123/199 (61%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FDE G+SP +K++ GY Q + +Q A++ + GKD + +A+TGTGK+ AF LP +
Sbjct: 10 FDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLSR 69
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + TQL L+L PTRELA Q+A + KN G+ VL + GG ++ +
Sbjct: 70 L--DAKDNNTQL------LVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDIQL 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ QI+V TPGR++DHI +++L LK LVLDEAD +L +GF DVE ++
Sbjct: 122 RQLKRG-AQIVVGTPGRVMDHIRRG---TLKLDNLKALVLDEADEMLRMGFIDDVEWVLG 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+ RQ LFSATMPKE+
Sbjct: 178 HTPKTRQIALFSATMPKEI 196
>gi|116327340|ref|YP_797060.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116332045|ref|YP_801763.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120084|gb|ABJ78127.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116125734|gb|ABJ77005.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 549
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 128/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD + A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|225560279|gb|EEH08561.1| ATP-dependent RNA helicase MSS116 [Ajellomyces capsulatus G186AR]
Length = 680
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 145/263 (55%), Gaps = 24/263 (9%)
Query: 369 KREEEPILSQKRFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKA 423
K EEP +F E +S I+ LT I MT VQ T++A L G D + +A
Sbjct: 66 KEAEEPPAELTQFSELASNGLVSDNIIRVLTNKMNITTMTDVQRMTINATLNGSDVLAQA 125
Query: 424 KTGTGKSIAFLLPAIEAVLKATS-------SSTTQLVPPIYVLILCPTRELASQIAAEAI 476
KTGTGK++AFLLP I+ +LK S + I +I+ PTRELA QIA EA
Sbjct: 126 KTGTGKTLAFLLPVIQNILKDQHLAQRPRFSRSQTDASDIRAIIISPTRELAEQIAVEAR 185
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
L+ N I V T VGGT+ + R++ D C ILV TPGRL+D I + V L
Sbjct: 186 KLVSN-TSIIVQTAVGGTKKREGLMRIQRDGCHILVGTPGRLID-IFSDPNSGVAAPKLS 243
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREHT 586
LVLDEAD LLD+GF D++ + LP R RQ+L+FSAT+P+E++ +KR+
Sbjct: 244 ALVLDEADRLLDIGFAPDIQELQTYLPHRRDVDRQTLMFSATVPREVMSMVRQTMKRDFA 303
Query: 587 YIDTVGLGSVETPVKVSKYNIYV 609
++ TV + T + V + +++
Sbjct: 304 FVKTVQEDEIPTHLTVPQKAVFL 326
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FDE G+S +KA+ +G+ + T +QEAT+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFDELGLSEDLLKAVKRSGFEEATPIQEATIPLVLAGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V + I +I+ PTRELA Q E L K+ V + GG +
Sbjct: 62 HVDPKEHA--------IQAIIISPTRELAIQTQEELYRLGKDKRA-RVQVVYGGADIR-R 111
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q +L +P QILV TPGRLLDHI K+ V L +KMLVLDEAD +LD+GF D+E I+
Sbjct: 112 QIKLLKNPPQILVGTPGRLLDHINRKT---VDLSKVKMLVLDEADEMLDMGFLDDIEKII 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+P +RQ+LLFSATMPK ++
Sbjct: 169 SNVPGQRQTLLFSATMPKAIL 189
>gi|336380579|gb|EGO21732.1| hypothetical protein SERLADRAFT_474546 [Serpula lacrymans var.
lacrymans S7.9]
Length = 555
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 152/265 (57%), Gaps = 25/265 (9%)
Query: 354 EISKNKLNGNGEKKEKREEEPI-LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSA 412
+ + N+ NG G + + + LS RF + +P++ + + +T VQEATL
Sbjct: 51 QTAPNQTNGQGGQVDAMDTSRTHLSTMRFRD---APISNASKAGIKHEFLTDVQEATLKL 107
Query: 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP--IYVLILCPTRELASQ 470
L G D +V+AKTGTGK++AFLLPAIE + K Q +P I +L++ PTRELA Q
Sbjct: 108 GLSGIDLLVQAKTGTGKTVAFLLPAIERLEK-------QNLPQDKISILVISPTRELALQ 160
Query: 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV 530
I EA L+ H + V +GGT ++ R+ S C ILVATPGRL+DH+++ + L
Sbjct: 161 IEKEARDLIA-HRQLCVQNAIGGTNINKEKSRIFSQRCDILVATPGRLIDHLQSNN-LKP 218
Query: 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKE------LV 580
RL L+ L+LDEAD LLD GF++D+E I LP R RQ +L+SAT+ +E L
Sbjct: 219 RLSNLQTLILDEADRLLDQGFKRDLETIFSFLPDRRHVPRQCMLYSATLSQEIKQIASLY 278
Query: 581 LKREHTYIDTVGLGSVETPVKVSKY 605
L H ++ T+ G T +++
Sbjct: 279 LHSNHKFVSTLTEGETNTHKHAAQF 303
>gi|414881419|tpg|DAA58550.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 363
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 108/148 (72%), Gaps = 6/148 (4%)
Query: 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI 522
P ELA+Q+AAEA LLK H +GV ++GGTR +QR ++++PCQILVATPGRL DH+
Sbjct: 15 PFWELANQLAAEARKLLKYHRSLGVQVVIGGTRLPQEQRSMQANPCQILVATPGRLKDHL 74
Query: 523 ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE---- 578
EN G S R+ G+K+LVLDEAD LLD+GFR+D+E I+ +P+ RQ+LLFSAT+ +E
Sbjct: 75 ENTPGFSTRIRGVKVLVLDEADRLLDMGFRRDIEKIITFIPKDRQTLLFSATVSEEIHQI 134
Query: 579 --LVLKREHTYIDTVGLGSVETPVKVSK 604
L +++++ +I+ V G ET +V++
Sbjct: 135 SHLAMRKDYDFINAVQEGDEETHAQVNQ 162
>gi|393242285|gb|EJD49804.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 136/248 (54%), Gaps = 35/248 (14%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
M+ +Q T+ LEGKD + +AKTGTGK++AFLLP ++ +L+ + I LIL
Sbjct: 126 MSEIQAKTVDIGLEGKDILGQAKTGTGKTVAFLLPIVQKILEKPPPHGS-----IAALIL 180
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDH 521
PTRELA QIA E LL++ + V T+VGGT D + L + C ILV TPGR+ DH
Sbjct: 181 SPTRELAFQIAKECTPLLRSTH-LNVRTVVGGTNVNTDLKNLAAG-CDILVGTPGRVKDH 238
Query: 522 IENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMP- 576
++N L RL L+ VLDEAD LLD+GF D+ I+ LP R RQS+LFSATMP
Sbjct: 239 LQNMK-LGDRLKNLQAFVLDEADRLLDMGFSPDIRTIISFLPDRAVVPRQSMLFSATMPE 297
Query: 577 -----KELVLKREHTYIDTVGLGSVETPVKVSKYNIYV-----FVLVLSI---------- 616
K +VL +H ++ T+ + V ++ I F L+L
Sbjct: 298 NVVKIKNMVLLPDHAHVSTIDPEEANAHLHVEQHYIAAPLDAHFPLLLHFIRDDIRKHGA 357
Query: 617 --KIQAFY 622
KI AFY
Sbjct: 358 KSKIMAFY 365
>gi|239607182|gb|EEQ84169.1| DEAD box RNA helicase HelA [Ajellomyces dermatitidis ER-3]
gi|327351142|gb|EGE79999.1| DEAD box RNA helicase HelA [Ajellomyces dermatitidis ATCC 18188]
Length = 696
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 146/264 (55%), Gaps = 26/264 (9%)
Query: 369 KREEEPILSQKRFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKA 423
K EE +F E IS I+ +T I MT VQ T++A L G D + +A
Sbjct: 66 KEAEEAPCELTQFSELASNGLISDNVIRVITNQMNITTMTDVQRMTINATLNGSDVLAQA 125
Query: 424 KTGTGKSIAFLLPAIEAVLKATS-------SSTTQLVPPIYVLILCPTRELASQIAAEAI 476
KTGTGK++AFLLP ++ +LK S I +I+ PTRELA QIA EA
Sbjct: 126 KTGTGKTLAFLLPVVQNILKDQQLAQRPRFSHNQTDASDIRAIIISPTRELAEQIAVEAK 185
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSVRLMGL 535
++ N I V T VGGTR + R++ D C ILV TPGRL+D + SG+S L
Sbjct: 186 KIVSN-TSIIVQTAVGGTRKREGLMRIQRDGCHILVGTPGRLIDIFSDPNSGVSAP--KL 242
Query: 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREH 585
LVLDEAD LLD+GF D++ + LPRR RQ+L+FSAT+P+E++ +KR+
Sbjct: 243 SALVLDEADRLLDIGFAPDIQELQTYLPRRREVDRQTLMFSATVPREVMSMVRQTMKRDF 302
Query: 586 TYIDTVGLGSVETPVKVSKYNIYV 609
T++ TV T + V + ++ +
Sbjct: 303 TFVKTVQEDETPTHLAVPQKHVVL 326
>gi|261200939|ref|XP_002626870.1| DEAD box RNA helicase HelA [Ajellomyces dermatitidis SLH14081]
gi|239593942|gb|EEQ76523.1| DEAD box RNA helicase HelA [Ajellomyces dermatitidis SLH14081]
Length = 699
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 146/264 (55%), Gaps = 26/264 (9%)
Query: 369 KREEEPILSQKRFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKA 423
K EE +F E IS I+ +T I MT VQ T++A L G D + +A
Sbjct: 66 KEAEEAPCELTQFSELASNGLISDNVIRVITNQMNITTMTDVQRMTINATLNGSDVLAQA 125
Query: 424 KTGTGKSIAFLLPAIEAVLKATS-------SSTTQLVPPIYVLILCPTRELASQIAAEAI 476
KTGTGK++AFLLP ++ +LK S I +I+ PTRELA QIA EA
Sbjct: 126 KTGTGKTLAFLLPVVQNILKDQQLAQRPRFSHNQTDASDIRAIIISPTRELAEQIAVEAK 185
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSVRLMGL 535
++ N I V T VGGTR + R++ D C ILV TPGRL+D + SG+S L
Sbjct: 186 KIVSN-TSIIVQTAVGGTRKREGLMRIQRDGCHILVGTPGRLIDIFSDPNSGVSAP--KL 242
Query: 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREH 585
LVLDEAD LLD+GF D++ + LPRR RQ+L+FSAT+P+E++ +KR+
Sbjct: 243 SALVLDEADRLLDIGFAPDIQELQTYLPRRREVDRQTLMFSATVPREVMSMVRQTMKRDF 302
Query: 586 TYIDTVGLGSVETPVKVSKYNIYV 609
T++ TV T + V + ++ +
Sbjct: 303 TFVKTVQEDETPTHLAVPQKHVVL 326
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 127/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S + FD+ G++P +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP
Sbjct: 31 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 91 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTALRSAVVFGGVDM 149
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++
Sbjct: 150 NPQSEQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQ 205
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 206 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 236
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 124/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++P +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L +SS + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAK-HTALRSAVVFGGVDMNSQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP++RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKQRQTLLFSATFSPE-IKKLASTYL 214
>gi|301117302|ref|XP_002906379.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107728|gb|EEY65780.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 499
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 133/225 (59%), Gaps = 14/225 (6%)
Query: 376 LSQKRFDECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
LS F IS + LT GY +T VQ TL L+G+D + K KTG GK+IAFL
Sbjct: 32 LSDVSFASLPISQRSKDVLTRDMGYEFLTHVQNDTLPLVLDGRDVLAKGKTGNGKTIAFL 91
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E +L + I L++ PTRELA QIA EA+ L H G+ VGG+
Sbjct: 92 LPTLERMLTHPQPKQDK----ISALVISPTRELAQQIAVEAVKLTNAH-GLRTSCFVGGS 146
Query: 495 RFKVDQRRL-ESDPCQILVATPGRLLDHIENKSG-LSVRLMGLKMLVLDEADHLLDLGFR 552
D + L +S +LV+TPGRL H+E+ SG + +L L++LVLDEAD LLD+GFR
Sbjct: 147 AVNKDVKELTQSGGIDVLVSTPGRLQAHLEDNSGRIRQKLDSLQVLVLDEADRLLDMGFR 206
Query: 553 KDVENIVDCLPRRRQSLLFSATMP------KELVLKREHTYIDTV 591
D+ I+ LP+ RQ+LLFSAT+P K++ L ++ ++DT+
Sbjct: 207 PDIMRIISHLPKERQTLLFSATLPAATEELKDVALLDDYVFVDTI 251
>gi|336367848|gb|EGN96192.1| hypothetical protein SERLA73DRAFT_94250 [Serpula lacrymans var.
lacrymans S7.3]
Length = 528
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 152/265 (57%), Gaps = 25/265 (9%)
Query: 354 EISKNKLNGNGEKKEKREEEPI-LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSA 412
+ + N+ NG G + + + LS RF + +P++ + + +T VQEATL
Sbjct: 24 QTAPNQTNGQGGQVDAMDTSRTHLSTMRFRD---APISNASKAGIKHEFLTDVQEATLKL 80
Query: 413 CLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP--IYVLILCPTRELASQ 470
L G D +V+AKTGTGK++AFLLPAIE + K Q +P I +L++ PTRELA Q
Sbjct: 81 GLSGIDLLVQAKTGTGKTVAFLLPAIERLEK-------QNLPQDKISILVISPTRELALQ 133
Query: 471 IAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSV 530
I EA L+ H + V +GGT ++ R+ S C ILVATPGRL+DH+++ + L
Sbjct: 134 IEKEARDLIA-HRQLCVQNAIGGTNINKEKSRIFSQRCDILVATPGRLIDHLQSNN-LKP 191
Query: 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKE------LV 580
RL L+ L+LDEAD LLD GF++D+E I LP R RQ +L+SAT+ +E L
Sbjct: 192 RLSNLQTLILDEADRLLDQGFKRDLETIFSFLPDRRHVPRQCMLYSATLSQEIKQIASLY 251
Query: 581 LKREHTYIDTVGLGSVETPVKVSKY 605
L H ++ T+ G T +++
Sbjct: 252 LHSNHKFVSTLTEGETNTHKHAAQF 276
>gi|418719789|ref|ZP_13278988.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. UI 09149]
gi|418737487|ref|ZP_13293884.1| DEAD/DEAH box helicase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410743832|gb|EKQ92574.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. UI 09149]
gi|410746681|gb|EKQ99587.1| DEAD/DEAH box helicase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 549
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|421093567|ref|ZP_15554291.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
gi|410363550|gb|EKP14579.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
gi|456889388|gb|EMG00280.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200701203]
Length = 549
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|154276582|ref|XP_001539136.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414209|gb|EDN09574.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 680
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 144/263 (54%), Gaps = 24/263 (9%)
Query: 369 KREEEPILSQKRFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKA 423
K EEP +F E +S I+ LT I MT VQ T++A L G D + +A
Sbjct: 66 KEVEEPPAELTQFSELASNGLVSDNIIRVLTNKMNITTMTDVQRMTINATLNGSDVLAQA 125
Query: 424 KTGTGKSIAFLLPAIEAVLKATS-------SSTTQLVPPIYVLILCPTRELASQIAAEAI 476
KTGTGK++AFLLP I+ +LK S I +I+ PTRELA QIA EA
Sbjct: 126 KTGTGKTLAFLLPVIQNILKDQHLAQRPRFSRNQTDASDIRAIIISPTRELAEQIAVEAR 185
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
L+ N I V T VGGT+ + R++ D C ILV TPGRL+D I + V L
Sbjct: 186 KLVSN-TSIIVQTAVGGTKKREGLMRIQRDGCHILVGTPGRLID-IFSDPNSGVAAPKLS 243
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREHT 586
LVLDEAD LLD+GF D++ + LP R RQ+L+FSAT+P+E++ +KR+
Sbjct: 244 ALVLDEADRLLDIGFAPDIQELQTFLPHRRDVDRQTLMFSATVPREVMSMVRQTMKRDFA 303
Query: 587 YIDTVGLGSVETPVKVSKYNIYV 609
++ TV + T + V + I++
Sbjct: 304 FVKTVQEDEIPTHLTVPQKAIFL 326
>gi|398333825|ref|ZP_10518530.1| superfamily II DNA/RNA helicase [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 538
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|24216134|ref|NP_713615.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
56601]
gi|45656634|ref|YP_000720.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386075188|ref|YP_005989508.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
IPAV]
gi|417767405|ref|ZP_12415346.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|417769088|ref|ZP_12417007.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418666564|ref|ZP_13227983.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|418681578|ref|ZP_13242804.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692740|ref|ZP_13253813.1| DEAD/DEAH box helicase [Leptospira interrogans str. FPW2026]
gi|418699223|ref|ZP_13260189.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|418704816|ref|ZP_13265683.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418711780|ref|ZP_13272535.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418715358|ref|ZP_13275543.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 08452]
gi|418723442|ref|ZP_13282281.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12621]
gi|418730350|ref|ZP_13288851.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12758]
gi|421086548|ref|ZP_15547397.1| DEAD/DEAH box helicase [Leptospira santarosai str. HAI1594]
gi|421101142|ref|ZP_15561756.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115245|ref|ZP_15575653.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|421121668|ref|ZP_15581961.1| DEAD/DEAH box helicase [Leptospira interrogans str. Brem 329]
gi|421127344|ref|ZP_15587568.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421136501|ref|ZP_15596606.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|24197378|gb|AAN50633.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
56601]
gi|45599869|gb|AAS69357.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458980|gb|AER03525.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
IPAV]
gi|400326728|gb|EJO78991.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400350143|gb|EJP02421.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400357327|gb|EJP13460.1| DEAD/DEAH box helicase [Leptospira interrogans str. FPW2026]
gi|409948831|gb|EKN98816.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409963142|gb|EKO26871.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12621]
gi|410013023|gb|EKO71106.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Canicola
str. Fiocruz LV133]
gi|410019389|gb|EKO86209.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410345519|gb|EKO96615.1| DEAD/DEAH box helicase [Leptospira interrogans str. Brem 329]
gi|410368938|gb|EKP24312.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410431047|gb|EKP75409.1| DEAD/DEAH box helicase [Leptospira santarosai str. HAI1594]
gi|410435434|gb|EKP84566.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410757345|gb|EKR18956.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410761805|gb|EKR27977.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Bataviae
str. L1111]
gi|410765429|gb|EKR36129.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410768023|gb|EKR43281.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410775027|gb|EKR55030.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 12758]
gi|410788643|gb|EKR82358.1| DEAD/DEAH box helicase [Leptospira interrogans str. UI 08452]
gi|455667573|gb|EMF32874.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Pomona str.
Fox 32256]
gi|455792634|gb|EMF44382.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lora str. TE
1992]
gi|456966860|gb|EMG08349.1| DEAD/DEAH box helicase [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 540
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + I L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 NIL-------TKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|417758992|ref|ZP_12407031.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000624]
gi|417775182|ref|ZP_12423041.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000621]
gi|417786503|ref|ZP_12434193.1| DEAD/DEAH box helicase [Leptospira interrogans str. C10069]
gi|418674623|ref|ZP_13235923.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000623]
gi|409945092|gb|EKN90670.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000624]
gi|409950125|gb|EKO04654.1| DEAD/DEAH box helicase [Leptospira interrogans str. C10069]
gi|410575103|gb|EKQ38126.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000621]
gi|410578406|gb|EKQ46267.1| DEAD/DEAH box helicase [Leptospira interrogans str. 2002000623]
Length = 540
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + I L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 NIL-------TKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|405121031|gb|AFR95801.1| DEAD-box ATP-dependent RNA helicase 26 [Cryptococcus neoformans
var. grubii H99]
Length = 602
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 137/234 (58%), Gaps = 27/234 (11%)
Query: 376 LSQKRF-DECGISPLTIKALT--AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
+ + RF D G+SP +L I + +VQ ATL L G D + +AKTGTGK++A
Sbjct: 58 IDRPRFQDFTGLSPEIFPSLPFETCTEIDLPKVQAATLPTILAGDDVLAQAKTGTGKTLA 117
Query: 433 FLLPAIEAVLKATSSSTTQLVPP---IYVLILCPTRELASQI--AAEAIALLKNHDGIGV 487
FL+P ++ +L A +PP +LIL PTRELA QI AE ++ N G
Sbjct: 118 FLVPVVQHLLSAP-------MPPSALTSILILSPTRELAQQINEVAERMSAALNRK-FGT 169
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
++VGGT D + L+S ILVATPGRLLD +EN G+ R LKM+VLDEAD LL
Sbjct: 170 RSIVGGTNMDRDIKNLKSKRADILVATPGRLLDLMEN-GGIKTRFAQLKMIVLDEADRLL 228
Query: 548 DLGFRKDVENIVDCLPR----RRQSLLFSATMPKE------LVLKREHTYIDTV 591
D GFR+++ I D LP RQ+LLFSAT+P E + LK+++ +I T+
Sbjct: 229 DAGFRRELVKIFDYLPAPHVVPRQTLLFSATLPTEVHSIASIALKKDYKFITTL 282
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++P +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 35 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 95 LLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTALRSAVVFGGVDMNPQM 153
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 154 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQRILN 209
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 210 LLPKERQTLLFSATFSPE-IKKLASTYL 236
>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
33656]
gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
33656]
gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
17629]
gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
Length = 530
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 140/234 (59%), Gaps = 18/234 (7%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RFDE ++P ++ + G+ + T +Q + A L G+D + +A+TGTGK+ AF +P +E
Sbjct: 5 RFDELELNPKILRGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGIPVLE 64
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+V SS TQ V+IL PTRELA Q+A E L K G+ VL + GG
Sbjct: 65 SV--DASSHKTQ------VIILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ QI++ TPGRL+DH+ K+ +R +K +VLDEAD +L++GFR+D+E ++
Sbjct: 117 IKALKGG-VQIIIGTPGRLMDHLRRKT---IRPDHVKTIVLDEADEMLNMGFREDIETVL 172
Query: 560 DCLPRRRQSLLFSATMPK---ELVLKREHTYIDTVGLGSVETPVKVSKYNIYVF 610
+ LP+ Q++LFSATMPK E+ K +H D + + V+ + V+ + Y +
Sbjct: 173 EYLPQEHQTVLFSATMPKPILEITRKYQH---DAINIKIVKKELTVANIDQYYY 223
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 123/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++P +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTALRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 127/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S FD+ G++P +KA+ +GY T +QE + L G+D + A+TGTGK+ +F LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 69 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTALRSAVVFGGVDM 127
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++
Sbjct: 128 NPQSEQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQ 183
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 184 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 214
>gi|339007892|ref|ZP_08640466.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338775095|gb|EGP34624.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 506
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 131/199 (65%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E G+SP +++++ G+ + T +Q T+ L G+D + +A+TGTGK++AF +P IE
Sbjct: 4 FNELGLSPSVLRSISNMGFEEATPIQALTIPVALTGRDLIGQAQTGTGKTVAFGIPMIEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TSS+ Q + +L PTRELA Q++ E I L + GI L + GG
Sbjct: 64 I--DTSSNHIQGI------VLAPTRELAVQVSEELIKL-GQYTGIKTLPIYGGQDIMRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ +P ++VATPGRL+DHI ++ +RL ++ LVLDEAD +L++GF +++E+I++
Sbjct: 115 RALKKNP-HVIVATPGRLIDHINRRT---IRLQNIQTLVLDEADEMLNMGFIEEIESILE 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+++
Sbjct: 171 QIPDERQTLLFSATMPRQI 189
>gi|421871323|ref|ZP_16302945.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
gi|372459950|emb|CCF12494.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
Length = 506
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 131/199 (65%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E G+SP +++++ G+ + T +Q T+ L G+D + +A+TGTGK++AF +P IE
Sbjct: 4 FNELGLSPSVLRSISNMGFEEATPIQALTIPVALTGRDLIGQAQTGTGKTVAFGIPMIEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TSS+ Q + +L PTRELA Q++ E I L + GI L + GG
Sbjct: 64 I--DTSSNHIQGI------VLAPTRELAVQVSEELIKL-GQYTGIKTLPIYGGQDIMRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ +P ++VATPGRL+DHI ++ +RL ++ LVLDEAD +L++GF +++E+I++
Sbjct: 115 RALKKNP-HVIVATPGRLIDHINRRT---IRLQNIQTLVLDEADEMLNMGFIEEIESILE 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+++
Sbjct: 171 QIPDERQTLLFSATMPRQI 189
>gi|366054164|ref|ZP_09451886.1| ATP-dependent RNA helicase DeaD [Lactobacillus suebicus KCTC 3549]
Length = 506
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 122/200 (61%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +GY + T +QE T+ L+G+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLDGQDVIGQAQTGTGKTAAFGLPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ P I LI+ PTRELA Q E L K+ V + GG +
Sbjct: 62 HIDTEN--------PDIQALIISPTRELAIQTQEELYRLGKDKHA-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L++ P QILV TPGRLLDHI ++ V+L LK LVLDEAD +L++GF +D+E+I+
Sbjct: 113 INNLKNHP-QILVGTPGRLLDHINRRT---VKLANLKTLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P +RQ+LLFSATMP E+
Sbjct: 169 KQTPEKRQTLLFSATMPPEI 188
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 127/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S FD+ G++P +KA+ +GY T +QE + L G+D + A+TGTGK+ +F LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 69 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTALRSAVVFGGVDM 127
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++
Sbjct: 128 NPQSEQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQ 183
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 184 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 214
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 127/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S FD+ G++P +KA+ +GY T +QE + L G+D + A+TGTGK+ +F LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 69 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTALRSAVVFGGVDM 127
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++
Sbjct: 128 NPQSEQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQ 183
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 184 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 214
>gi|325090289|gb|EGC43599.1| ATP-dependent RNA helicase MSS116 [Ajellomyces capsulatus H88]
Length = 680
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 144/263 (54%), Gaps = 24/263 (9%)
Query: 369 KREEEPILSQKRFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKA 423
K EEP +F E +S I+ LT I MT VQ T++A L G D + +A
Sbjct: 66 KEVEEPPAELTQFSELASNGLVSDNIIRVLTNKMNITTMTDVQRMTINATLNGSDVLAQA 125
Query: 424 KTGTGKSIAFLLPAIEAVLKATS-------SSTTQLVPPIYVLILCPTRELASQIAAEAI 476
KTGTGK++AFLLP I+ +LK S I +I+ PTRELA QIA EA
Sbjct: 126 KTGTGKTLAFLLPVIQNILKDQHLAQRPRFSRNQTDASDIRAIIISPTRELAEQIAVEAR 185
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
L+ N I V T VGGT+ + R++ D C ILV TPGRL+D I + V L
Sbjct: 186 KLVSN-TSIIVQTAVGGTKKREGLMRIQRDGCHILVGTPGRLID-IFSDPNSGVAAPKLS 243
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREHT 586
LVLDEAD LLD+GF D++ + LP R RQ+L+FSAT+P+E++ +KR+
Sbjct: 244 ALVLDEADRLLDIGFAPDIQELQTYLPHRRDVDRQTLMFSATVPREVMSMVRQTMKRDFA 303
Query: 587 YIDTVGLGSVETPVKVSKYNIYV 609
++ TV + T + V + +++
Sbjct: 304 FVKTVQEDEIPTHLTVPQKAVFL 326
>gi|225681866|gb|EEH20150.1| ATP-dependent RNA helicase mss116 [Paracoccidioides brasiliensis
Pb03]
Length = 773
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 135/226 (59%), Gaps = 21/226 (9%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK-------ATSSSTTQLVP 454
MT VQ T++A L G D + +AKTGTGK++AFL+P ++ +LK A ++ +
Sbjct: 103 MTEVQRMTINATLNGSDVLAQAKTGTGKTLAFLIPVVQNILKDEQLSQRARNNRSRSNAS 162
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
I LI+ PTRELA QIA EA L+ N I V T VGGTR + R++ + C ILV T
Sbjct: 163 DIRALIISPTRELAEQIAVEAKKLVSNTSVI-VQTAVGGTRKREGLMRIQREGCHILVGT 221
Query: 515 PGRLLDHIEN-KSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSL 569
PGRL+D + KSG++ L LVLDEAD LLD+GF D++ + LPRR RQ+L
Sbjct: 222 PGRLIDIFSDPKSGVAA--PKLSALVLDEADRLLDIGFAPDIKELQSYLPRRQDVDRQTL 279
Query: 570 LFSATMPKELV------LKREHTYIDTVGLGSVETPVKVSKYNIYV 609
+FSAT+P E++ +K + T++ TV T + V + +Y+
Sbjct: 280 MFSATVPTEVMDMVRQTMKPDFTFVKTVKEDETPTHLTVPQKLVYL 325
>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
proteoclasticus B316]
gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
B316]
Length = 711
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 13/208 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
R+DE G+ I+A++ G+ M+ +Q+A + ++GKD + +A+TGTGK+ AF +P +
Sbjct: 60 RYDESGLDERIIRAVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGTGKTAAFGIPLLH 119
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V A + ++LCPTRELA Q A + K GI VL + GG
Sbjct: 120 QVDPANKH--------LQAVVLCPTRELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQ 171
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L S+ QI+V TPGR++DH+ + +++ +K+LVLDEAD +LD+GFR+D+E I+
Sbjct: 172 IKAL-SNGVQIVVGTPGRVMDHMRRHT---MKMKDVKVLVLDEADEMLDMGFREDIETIL 227
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTY 587
+P RQ+ LFSATMP E +LK TY
Sbjct: 228 QGMPMERQTALFSATMP-EAILKITKTY 254
>gi|156061783|ref|XP_001596814.1| hypothetical protein SS1G_03037 [Sclerotinia sclerotiorum 1980]
gi|154700438|gb|EDO00177.1| hypothetical protein SS1G_03037 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 688
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 141/240 (58%), Gaps = 23/240 (9%)
Query: 380 RFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
RFDE + P + +T ++ MT VQ T++ L+G D + +A+TGTGK+I FL
Sbjct: 77 RFDELTKYGLVHPNVVNEITDTMKLETMTEVQTMTINQALQGTDIIAQARTGTGKTIGFL 136
Query: 435 LPAIEAVLK-----ATSSSTTQLVPP-IYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
LP I+ +L+ AT ++ P I +I+ PTRELA QIA EA+ + +N D I V
Sbjct: 137 LPTIQNILEKSPELATRQRYSRARPSDIRAIIISPTRELAEQIAVEAVKITRNTDLI-VQ 195
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
VGG+ + R+++ + C ILV TPGRL D + ++ V GL LVLDEAD LLD
Sbjct: 196 VAVGGSSKREMLRKVQREGCHILVGTPGRLQDLLMDEYS-QVSAPGLTTLVLDEADRLLD 254
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREHTYIDTVGLGSVET 598
GF KD+ENI LP R RQ+LLFSAT+P+E++ LK + ++ TV G V T
Sbjct: 255 DGFSKDIENIEALLPNRKEVDRQTLLFSATVPREVMRLVKRTLKPGYQFVQTVKEGDVAT 314
>gi|296822456|ref|XP_002850288.1| ATP-dependent RNA helicase mss116 [Arthroderma otae CBS 113480]
gi|238837842|gb|EEQ27504.1| ATP-dependent RNA helicase mss116 [Arthroderma otae CBS 113480]
Length = 644
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 155/285 (54%), Gaps = 29/285 (10%)
Query: 361 NGNGEKKEKREEEPILSQKRFDECGI-SPLTIKALT-AAGYIQMTRVQEATLSACLEGKD 418
N E ++ RE+E I E G+ I A+T G MT VQ T++ ++G D
Sbjct: 60 NAGIEAEDVREDELITEFAELGEKGVVDQRLIDAITKGMGLKTMTDVQVQTINESIQGTD 119
Query: 419 AVVKAKTGTGKSIAFLLPAIEAVLKATS-------SSTTQLVPPIYVLILCPTRELASQI 471
+ +AKTGTGK++AFLLP I +L+ + ++TQ I +++ PTRELA QI
Sbjct: 120 MIAQAKTGTGKTVAFLLPVIHRILQDPTLGNLRRKFASTQ---DIRAVVISPTRELAEQI 176
Query: 472 AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSV 530
A EA + + G+ V T VGGTR + RL+ + C ILV TPGRL+D + SG+S
Sbjct: 177 AVEAQKITRG-SGLKVQTAVGGTRKREGLMRLQREGCHILVGTPGRLMDLFSDPTSGVSA 235
Query: 531 RLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------V 580
L+ VLDEAD LLD+GF D+E I P R RQ+L+FSAT+P + +
Sbjct: 236 --PKLQAFVLDEADRLLDIGFAPDIERIQSFFPSRSQVDRQTLMFSATIPNSVKGLAREM 293
Query: 581 LKREHTYIDTVGLGSVETPVKVSKYNIYVFVLVLSIKIQAFYIIC 625
LK + T+I+TVG ETP + VF+ ++ A + I
Sbjct: 294 LKPDFTFINTVG---DETPTHLKVPQRAVFLRGFENQLPALFEIA 335
>gi|418741549|ref|ZP_13297923.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|410750997|gb|EKR07976.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 535
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLAAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 NIL-------TKGIQGVAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 480
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G+SP + A+ AGY + T +QE + L G+D + A+TGTGK+ +F LP IE
Sbjct: 3 FEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMIER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + + L+L PTRELA+Q+A KNH + + L+GG F+ Q
Sbjct: 63 LSRGRARARMP-----RSLVLAPTRELAAQVADNVKLYAKNHK-LNMALLIGGVSFE-PQ 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+++ IL+ATPGRLLDH E + GL L G+++LV+DEAD +LD+GF D+E I+
Sbjct: 116 KKILDQGADILIATPGRLLDHFE-RGGLL--LTGVEILVIDEADRMLDMGFIPDIERILK 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RRQ+L FSATMP E+
Sbjct: 173 LLPPRRQTLFFSATMPGEI 191
>gi|423559882|ref|ZP_17536184.1| hypothetical protein II3_05086 [Bacillus cereus MC67]
gi|401187066|gb|EJQ94141.1| hypothetical protein II3_05086 [Bacillus cereus MC67]
Length = 450
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 123/205 (60%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+
Sbjct: 1 MVNMKNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + +S + LI+ PTRELA QI AE +L + + I VL + GG
Sbjct: 61 LPILEKINPESSD--------VQALIVAPTRELALQITAEIKKMLVHREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L MLVLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSMLVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPDSKQTMLFSATMPKDI 193
>gi|398340011|ref|ZP_10524714.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Bim str.
1051]
gi|418677314|ref|ZP_13238590.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418687079|ref|ZP_13248242.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|421090063|ref|ZP_15550864.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 200802841]
gi|421130419|ref|ZP_15590613.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 2008720114]
gi|400322262|gb|EJO70120.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001326|gb|EKO51940.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 200802841]
gi|410358118|gb|EKP05299.1| DEAD/DEAH box helicase [Leptospira kirschneri str. 2008720114]
gi|410738475|gb|EKQ83210.1| DEAD/DEAH box helicase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 535
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLAAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 NIL-------TKGIQGVAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|451936748|ref|YP_007460602.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777671|gb|AGF48646.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 478
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 8/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ GIS AL AG++ T VQEAT+ L GKD +V A+TG+GK+ AF+LP ++
Sbjct: 3 FEKIGISSNIFSALKTAGFVSPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPILQI 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + S+ + P VL+L PTRELA QI + N + + T+VGG ++ +Q
Sbjct: 63 LSQKPKSNN---INP-QVLVLTPTRELALQITKATASYGINMPWLRIATIVGGMPYR-EQ 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ S ILVATPGRL+D + + V L G+++LVLDEAD +LD+GF +D+E IV
Sbjct: 118 IKALSKRVDILVATPGRLIDQMRSN---KVSLAGIQILVLDEADRMLDMGFIEDIETIVK 174
Query: 561 CLPRRRQSLLFSATMPKEL 579
PR RQ++LFSAT+ + +
Sbjct: 175 NTPRDRQTMLFSATIDESI 193
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 122/199 (61%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G++P +ALT GY T +QE + L+G+D + A+TGTGK+ F LP I+
Sbjct: 39 FADFGLAPEIQRALTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 98
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ SSS + P+ LIL PTRELA Q+ AE + H + + GG K Q
Sbjct: 99 LMAHASSSMSPARHPVRALILTPTRELAVQV-AENVKAYAKHTPLRSTVVFGGMDMK-PQ 156
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +I++ATPGRLLDHIE K ++ L ++MLV+DEAD +LD+GF D++ I++
Sbjct: 157 TVLLRGGVEIVIATPGRLLDHIEQK---NISLSQVQMLVMDEADRMLDMGFLPDLQRIIN 213
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++RQ+L+FSAT E+
Sbjct: 214 LLPKQRQNLMFSATFSPEI 232
>gi|418697379|ref|ZP_13258372.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H1]
gi|421109120|ref|ZP_15569644.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H2]
gi|409954881|gb|EKO13829.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H1]
gi|410005640|gb|EKO59427.1| DEAD/DEAH box helicase [Leptospira kirschneri str. H2]
Length = 540
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLAAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 NIL-------TKGMQGVAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 128/205 (62%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+++ F + +SP T+KA+ GY++ + +Q + L GKD + +A+TGTGK+ AF+L
Sbjct: 1 MTEITFKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFML 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E + + + L+LCPTRELA Q+ E+ +N+ + +L++ GG
Sbjct: 61 PILEKIDPKNKN--------VQALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQS 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ R L+ QI+V TPGR++DH+ + ++L LKMLVLDEAD +L++GF+ D+
Sbjct: 113 YDPQIRALKKG-VQIVVGTPGRVMDHMRRGT---LKLENLKMLVLDEADEMLNMGFKDDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I++ P RQ+++FSATM +E++
Sbjct: 169 EEILEKTPESRQTVMFSATMAREIM 193
>gi|359684699|ref|ZP_09254700.1| superfamily II DNA/RNA helicase [Leptospira santarosai str.
2000030832]
Length = 540
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + LIL PTREL QI+ EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKSIRGVSALILAPTRELTMQISDEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATM 575
R+Q+LLFSAT+
Sbjct: 171 HKCKNRKQTLLFSATL 186
>gi|421096883|ref|ZP_15557582.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200901122]
gi|410800128|gb|EKS02189.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200901122]
Length = 538
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + + GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSTIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIQGVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 127/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S + FD+ G++P +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP
Sbjct: 9 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 69 IIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTALRSAVVFGGVDM 127
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++
Sbjct: 128 NPQSDQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQ 183
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 184 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 214
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++P +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTALRSAVVFGGVDMNPQS 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 EQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSGE-IKKLAATYL 214
>gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 643
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 127/204 (62%), Gaps = 12/204 (5%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+Q F ISP ++A+T G+I + +Q + L+G+D + +A+TGTGK+ AF +P
Sbjct: 29 NQLLFSSLAISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIP 88
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
A++ + S T LILCPTRELA Q+A E L K GI + + GG
Sbjct: 89 ALDLIDVQDRSVQT--------LILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSI 140
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ R L+S I++ TPGR++DH+E + ++L +KM++LDEAD +LD+GFR+D+E
Sbjct: 141 ERQIRSLKSG-VHIVIGTPGRVMDHMERNT---LKLNNVKMMILDEADEMLDMGFREDIE 196
Query: 557 NIVDCLPRRRQSLLFSATMPKELV 580
+I++ +P RQ++LFSATM K ++
Sbjct: 197 SILEEMPEERQTILFSATMSKPIM 220
>gi|386712716|ref|YP_006179038.1| DEAD/DEAH box helicase [Halobacillus halophilus DSM 2266]
gi|384072271|emb|CCG43761.1| DEAD-box ATP-dependent RNA helicase CshA [Halobacillus halophilus
DSM 2266]
Length = 490
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 14/199 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S +K+L G+ + T +QE T+ LEGKD + +A+TGTGK+ AF +P +E
Sbjct: 4 FNSLGLSNPILKSLDDMGFEETTPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGIPMLEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K S + LI+ PTRELA Q+A E + L G+ L + GG+ +
Sbjct: 64 IDKQVKS--------VQGLIVAPTRELAIQVAEE-MNRLGKVKGVRALPIYGGSNMERQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+++ QI+VATPGRLLDHI K+ ++L + VLDEAD +L++GF +D+ +I+
Sbjct: 115 RSLKTN--QIVVATPGRLLDHIRRKT---IKLQNVHTAVLDEADEMLNMGFIEDIRDILK 169
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSATMPKE+
Sbjct: 170 ALPEERQTLLFSATMPKEI 188
>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein, partial
[Paenibacillus sp. oral taxon 786 str. D14]
gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 375
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 125/209 (59%), Gaps = 13/209 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +SPL ++ L G + T VQ A + G+DA+V+A+TGTGK++AFLLP +E
Sbjct: 5 FESLNVSPLLVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLPILEK 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ P LI+ PTRELA QI AEA L + +G+ VL GG +
Sbjct: 65 IRPER--------PEAQALIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQL 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L++ Q+++ TPGRLLDH+ S+ L ++ LVLDEAD +L +GF +VE I+
Sbjct: 117 RKLKNG-AQLVIGTPGRLLDHLRRG---SLTLGAVRYLVLDEADQMLHMGFLAEVEEILS 172
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYID 589
+PR RQ++LFSATMP V + TY+D
Sbjct: 173 LVPRSRQTMLFSATMPGN-VKRLAKTYMD 200
>gi|335428790|ref|ZP_08555700.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|335430826|ref|ZP_08557712.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334887366|gb|EGM25698.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334891731|gb|EGM29977.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
Length = 528
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K+F+E IS +++ G+++ T +Q + LEG D + +A+TGTGK+ AF +P I
Sbjct: 3 KKFNELEISDQIKQSIAEMGFVEPTPIQAEAIPYILEGNDIIGQAQTGTGKTAAFSIPLI 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S I +ILCPTRELA Q+ E L K +G+ V+ + GG + +
Sbjct: 63 EKLDLNNRS--------IQGIILCPTRELAIQVTDEIRKLTKYVEGVKVVPIYGGQSYNI 114
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L+ P QI+V TPGR++DHI K+ V+L +KML+LDEAD +L +GFR+D+E I
Sbjct: 115 QLKALKRKP-QIVVGTPGRVIDHINRKT---VKLENIKMLILDEADEMLKMGFREDLEYI 170
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ P RQ+ LFSATMPK +
Sbjct: 171 LQKTPTERQTTLFSATMPKAI 191
>gi|418754864|ref|ZP_13311086.1| DEAD/DEAH box helicase [Leptospira santarosai str. MOR084]
gi|409964965|gb|EKO32840.1| DEAD/DEAH box helicase [Leptospira santarosai str. MOR084]
Length = 540
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + LIL PTREL QI+ EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIRGVSALILAPTRELTMQISDEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATM 575
R+Q+LLFSAT+
Sbjct: 171 HKCKNRKQTLLFSATL 186
>gi|226289033|gb|EEH44545.1| ATP-dependent RNA helicase mss116 [Paracoccidioides brasiliensis
Pb18]
Length = 689
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 133/225 (59%), Gaps = 19/225 (8%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK-------ATSSSTTQLVP 454
MT VQ T++A L G D + +AKTGTGK++AFL+P ++ +LK A ++ +
Sbjct: 103 MTEVQRMTINATLNGSDVLAQAKTGTGKTLAFLIPVVQNILKDVQLSQRARNNRSRSNAS 162
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
I LI+ PTRELA QIA EA L+ N I V T VGGTR + R++ + C ILV T
Sbjct: 163 DIRALIISPTRELAEQIAVEAKKLVSNTSVI-VQTAVGGTRKREGLMRIQREGCHILVGT 221
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLL 570
PGRL+D I + V L LVLDEAD LLD+GF D++ + LPRR RQ+L+
Sbjct: 222 PGRLID-IFSDPNSGVAAPKLSALVLDEADRLLDIGFAPDIKELQSYLPRRQDVDRQTLM 280
Query: 571 FSATMPKELV------LKREHTYIDTVGLGSVETPVKVSKYNIYV 609
FSAT+P+E++ +K + T++ TV T + V + +Y+
Sbjct: 281 FSATVPREVMDMVRQTMKPDFTFVKTVKEDETPTHLTVPQKLVYL 325
>gi|223994927|ref|XP_002287147.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220976263|gb|EED94590.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 576
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 155/281 (55%), Gaps = 30/281 (10%)
Query: 351 IRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAA----GYIQMTRVQ 406
I K+I++ K E ++ +L+ F +C + L + + A G MT VQ
Sbjct: 53 IEKKIAERKAIVESRHNEALQDPTLLTNLSFADC--NELHVHSKRAIVEDLGLQTMTEVQ 110
Query: 407 EATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRE 466
T +A L G D + +A+TGTGK++AFL+PA+E +++ + Q I L++ PTRE
Sbjct: 111 AKTFTAALSGSDVLARARTGTGKTLAFLIPAVERIVRNINFVGGQ---GIGCLVVAPTRE 167
Query: 467 LASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKS 526
LA QI EA LL +H + V + GGT+ D + +LVATPGRLLDH++
Sbjct: 168 LAIQIGEEAEKLLLHHSDLTVQVMYGGTKMARDMHAMNKRLPTVLVATPGRLLDHLQET- 226
Query: 527 GLSVR--------LMGLKMLVLDEADHLLDLGFRKDVENIVDCLPR--RRQSLLFSATMP 576
VR + ++VLDE D LLD+GFR+D++ I+ LPR +RQ++LFSAT+P
Sbjct: 227 --KVRGRKFSDDVIANTDIVVLDEIDRLLDMGFRRDIQRILSYLPRKEKRQTMLFSATIP 284
Query: 577 KEL------VLKREHTYIDTVGLGSVETP--VKVSKYNIYV 609
K + LK ++ +D V G TP V+V++ +I +
Sbjct: 285 KGMKGIMRESLKEDYLEVDCVQDGRDSTPTNVRVTQSHIVL 325
>gi|410450231|ref|ZP_11304273.1| DEAD/DEAH box helicase [Leptospira sp. Fiocruz LV3954]
gi|418746969|ref|ZP_13303282.1| DEAD/DEAH box helicase [Leptospira santarosai str. CBC379]
gi|410015990|gb|EKO78080.1| DEAD/DEAH box helicase [Leptospira sp. Fiocruz LV3954]
gi|410792201|gb|EKR90143.1| DEAD/DEAH box helicase [Leptospira santarosai str. CBC379]
gi|456876557|gb|EMF91643.1| DEAD/DEAH box helicase [Leptospira santarosai str. ST188]
Length = 540
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + LIL PTREL QI+ EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIRGVSALILAPTRELTMQISDEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATM 575
R+Q+LLFSAT+
Sbjct: 171 HKCKNRKQTLLFSATL 186
>gi|422004407|ref|ZP_16351625.1| ATP-dependent RNA helicase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|417256851|gb|EKT86264.1| ATP-dependent RNA helicase [Leptospira santarosai serovar Shermani
str. LT 821]
Length = 540
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + LIL PTREL QI+ EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIRGVSALILAPTRELTMQISDEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATM 575
R+Q+LLFSAT+
Sbjct: 171 HKCKNRKQTLLFSATL 186
>gi|442751645|gb|JAA67982.1| Putative atp-dependent rna helicase pitchoune [Ixodes ricinus]
Length = 589
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 159/277 (57%), Gaps = 29/277 (10%)
Query: 331 KRVPLKSLEDEHD--FEEQVELIRKEISKNKLNGNGEKKEKREEEP-------ILSQKRF 381
++ P+ +ED D +EQ+ +E S++ +N E E+ + EP +LS RF
Sbjct: 39 EQAPVGDVEDIEDDANDEQMPEAEEEESESPVNAKSEDAEEEQAEPLPGTSLGVLSDTRF 98
Query: 382 DECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
D +S ++KA+ A G+ QMT +Q T+ LEG+D V AKTG+GK++AFL+PA+E
Sbjct: 99 DSLKGVVSEASLKAVKAMGFTQMTEIQAKTIPHLLEGRDMVAAAKTGSGKTLAFLIPAVE 158
Query: 440 AV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+ LK + T L++ PTRELA Q LL H + ++GGT +
Sbjct: 159 LLSKLKFMPRNGTG------ALVIAPTRELAMQTFGVLQELL-THQNQTLGLIMGGTSRQ 211
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ +L + LVATPGRLLDH++N S + L+ L++DEAD +LD+GF ++++
Sbjct: 212 SEANKL-AKGVNFLVATPGRLLDHLQNTSEFVYK--NLQCLIIDEADRILDIGFEEEMKQ 268
Query: 558 IVDCLPRRRQSLLFSATMPK------ELVLKREHTYI 588
I+ LP+RRQ++LFSAT+ K ++ LK E YI
Sbjct: 269 ILRLLPKRRQTMLFSATLTKKTEDLVKVALKSEPLYI 305
>gi|376260079|ref|YP_005146799.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373944073|gb|AEY64994.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 564
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 125/200 (62%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +A+ G+ + T +Q ++ LEG D + +A+TGTGK+ AF +PA+E
Sbjct: 6 FKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEK 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S I VL+LCPTRELA Q E +LK DGI +L + GG
Sbjct: 66 IDPQIDS--------IQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQI 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ P QI++ TPGR++DH+ ++ ++L LKM+VLDEAD +L++GFR+D++ I++
Sbjct: 118 MALKKRP-QIIIGTPGRVMDHMRRRT---LKLEALKMIVLDEADEMLNMGFREDIDTILE 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ++LFSATMPKE++
Sbjct: 174 KVPEDRQTILFSATMPKEIL 193
>gi|421112233|ref|ZP_15572691.1| DEAD/DEAH box helicase [Leptospira santarosai str. JET]
gi|410802288|gb|EKS08448.1| DEAD/DEAH box helicase [Leptospira santarosai str. JET]
Length = 540
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 124/196 (63%), Gaps = 11/196 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + LIL PTREL QI+ EA LLK+ DGI + ++GGT +K
Sbjct: 62 TIL-------TKNIRGVSALILAPTRELTMQISDEAKKLLKHSDGIRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATM 575
R+Q+LLFSAT+
Sbjct: 171 HKCKNRKQTLLFSATL 186
>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 529
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 129/201 (64%), Gaps = 10/201 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E KAL GY+++T +Q ++ +EG D A+TGTGK++AFLLP +
Sbjct: 2 KFNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTLH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L S+ + +P Y L+L PTREL QIA EA LL+ D +GV T++GGT +K
Sbjct: 62 RLL---SAEEEEALP--YALVLAPTRELTIQIAEEAKKLLEFTD-LGVATIIGGTDYKSQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++ L + C I+VATPGRL+D ++N GLS L +K+++LDEAD + D+GF +D++ I
Sbjct: 116 EQALGNKAC-IIVATPGRLIDFVKN-HGLS--LENIKVVILDEADRMFDMGFVQDLKYIF 171
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+QSLLFSAT+ E+V
Sbjct: 172 HKCKNRKQSLLFSATLSYEVV 192
>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 564
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 124/200 (62%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S A+ G+ + T +Q ++ LEG D + +A+TGTGK+ AF +PA+E
Sbjct: 6 FKDLTLSDEVQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEK 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S I VL+LCPTRELA Q E +LK DGI +L + GG
Sbjct: 66 IDSHIDS--------IQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQI 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ P QI++ TPGR++DH+ K+ ++L LKM+VLDEAD +L++GFR+D++ I++
Sbjct: 118 MALKKRP-QIIIGTPGRVMDHMRRKT---LKLESLKMIVLDEADEMLNMGFREDIDTILE 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ++LFSATMPKE++
Sbjct: 174 KVPEDRQTILFSATMPKEIL 193
>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 461
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + ++P ++AL +GY + T +Q + LEG D + A+TGTGK+ AF LP ++
Sbjct: 4 FADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVLQK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ SSS + + LIL PTRELA Q+ A A K + + L + GG K
Sbjct: 64 LMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAK-YSHLRSLVVFGGVDIKTQT 122
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + +ILVATPGRLLDHIE K SV+L ++MLVLDEAD +LD+GF D++ I+
Sbjct: 123 PHLRAG-IEILVATPGRLLDHIEQK---SVQLNQVQMLVLDEADRMLDMGFMPDLKRILA 178
Query: 561 CLPRRRQSLLFSATMPKEL 579
LPR+RQ+L+FSAT E+
Sbjct: 179 LLPRQRQNLMFSATFSAEI 197
>gi|456861522|gb|EMF80172.1| DEAD/DEAH box helicase [Leptospira weilii serovar Topaz str.
LT2116]
Length = 544
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLLAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DG + ++GGT +K
Sbjct: 62 TIL-------TKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGTRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|406915896|gb|EKD54936.1| hypothetical protein ACD_60C00032G0020 [uncultured bacterium]
Length = 457
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 133/227 (58%), Gaps = 14/227 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E ++P KA+ A GY T VQ ++ L+GKD V A+TGTGK+ +F+LPA+
Sbjct: 3 FAEFNLNPHIFKAIDACGYKNPTPVQAKSIPEILQGKDVVASAQTGTGKTASFVLPALHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ ST++ +LIL PTRELA+QI A+ + + +LVGG ++
Sbjct: 63 L------STSKASHKPRILILTPTRELATQITT-AVTKYGKFLRVNIASLVGGMPYRQQL 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L S P I+VATPGRLLDH+ N+ + L ++MLVLDEAD +LD+GF DV+ I
Sbjct: 116 RSL-SKPVDIIVATPGRLLDHMSNRR---LDLSAIEMLVLDEADRMLDMGFIDDVQEIAR 171
Query: 561 CLPRRRQSLLFSATMPKEL--VLKREHTYIDTVGLGSVE-TPVKVSK 604
P RQ+LLFSAT+ K L ++ R + + + TPVK+S+
Sbjct: 172 ATPASRQTLLFSATVDKRLSHIINRLLKNPVQINFSNEQLTPVKISQ 218
>gi|423610880|ref|ZP_17586741.1| hypothetical protein IIM_01595 [Bacillus cereus VD107]
gi|401248333|gb|EJR54655.1| hypothetical protein IIM_01595 [Bacillus cereus VD107]
Length = 448
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGIAEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI AE +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITAEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L M+VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSMIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|399017820|ref|ZP_10720009.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398102587|gb|EJL92767.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 504
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 124/206 (60%), Gaps = 5/206 (2%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P + RF++ G+SP +KAL+A GYI T +Q + L+G+D + A+TGTGK+ F
Sbjct: 11 PETPEVRFEDFGLSPDILKALSAQGYIHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGF 70
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LP I+ +L S+S + P+ LIL PTRELA Q+ A+ + + + GG
Sbjct: 71 SLPIIQLLLAHASTSMSPARHPVRALILTPTRELADQV-ADNVKAYSRFTPLRSTVVFGG 129
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
L +I++ATPGRLLDH++ K +V L ++LV+DEAD +LD+GF
Sbjct: 130 VDMAPQTATLRGG-VEIVIATPGRLLDHVQQK---TVNLSQTQILVMDEADRMLDMGFLP 185
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
D++ I++ LP++RQ+L+FSAT E+
Sbjct: 186 DLQRIINLLPKQRQNLMFSATFSPEI 211
>gi|328767710|gb|EGF77759.1| hypothetical protein BATDEDRAFT_2048 [Batrachochytrium
dendrobatidis JAM81]
Length = 384
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 138/234 (58%), Gaps = 12/234 (5%)
Query: 381 FDECGISPLTIKAL-TAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
F +S T+ AL Y M+ VQE LS D +V+AKTGTGK++AFL+ A+E
Sbjct: 9 FSSLNLSSSTMTALENNFKYKNMSTVQERVLSLLPTDADLLVRAKTGTGKTLAFLIAAVE 68
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+V+ S P + +LIL PTRELA QIA EA +L+ V + VGG +
Sbjct: 69 SVISRFKSRP----PGVPILILSPTRELALQIAREAESLVSPRRW-RVASAVGGESRGKN 123
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R + C ILVATPGRL D + N+ + +L GLKMLV DEAD LLD+GF K++++I
Sbjct: 124 IREITQFNCDILVATPGRLNDLLNNEPAVRKQLQGLKMLVYDEADILLDMGFTKEIQDIN 183
Query: 560 DCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNI 607
LP+ RQ+ +FSAT+ KE+ L+ +H +IDTV +T +K+ + ++
Sbjct: 184 FNLPKERQTYMFSATISKEVRSIASTTLRPDHVFIDTVPSNENDTHLKIKQTHV 237
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP ++A+ GY + T +Q + L G+D + A+TGTGK+ AF+LP +E
Sbjct: 3 FAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K S+S + + P+ LIL PTRELA QIA A A K + + + GG
Sbjct: 63 LKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTK-YLPLRSTVVFGGMNMDPQT 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L +IL+ATPGRLLDH+ K +V+L + +LVLDEAD +LD+GF D+ I+
Sbjct: 122 QELRRG-VEILIATPGRLLDHVGQK---TVQLNKVDVLVLDEADRMLDMGFINDIRKILG 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LPR RQ+LLFSAT E+
Sbjct: 178 MLPRTRQTLLFSATFAPEI 196
>gi|349573623|ref|ZP_08885599.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
gi|348014782|gb|EGY53650.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
Length = 456
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 122/194 (62%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP +AL+ GY Q T +Q A + L G D + A+TGTGK+ AF+LP +E
Sbjct: 4 FASLGLSPEITEALSEQGYEQPTAIQSAAIPKVLAGHDLLAAAQTGTGKTAAFMLPGLER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI A +KN + L GG
Sbjct: 64 LKRYANASTSPAMHPVRMLVLTPTRELADQIDQNTSAYIKNLP-LRHTVLFGGVNMDKQT 122
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S C+I+VAT GRLLDH++ K ++RL ++++VLDEAD +LD+GF D+ I+
Sbjct: 123 QSLRSG-CEIVVATVGRLLDHVQQK---NIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQ 178
Query: 561 CLPRRRQSLLFSAT 574
LP++RQ+LLFSAT
Sbjct: 179 MLPKQRQTLLFSAT 192
>gi|417782447|ref|ZP_12430177.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
gi|410777388|gb|EKR62036.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
Length = 542
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLLAIQEIGYTELTPIQERSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DG + ++GGT +K
Sbjct: 62 TIL-------TKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGTRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|398335898|ref|ZP_10520603.1| superfamily II DNA/RNA helicase [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 554
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LE KD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLESKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QI+ EA LLK+ +G+ + ++GGT +K
Sbjct: 62 TIL-------TKEIQGVSALVLAPTRELTMQISEEAKKLLKHSNGVRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|456822875|gb|EMF71345.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Canicola
str. LT1962]
Length = 474
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + I L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 NIL-------TKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 591
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 121/204 (59%), Gaps = 18/204 (8%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ +K F E G+SP +KA+ G+ + + +Q T+ L G D V ++TG+GK+ AF +
Sbjct: 1 MQKKPFTELGLSPELLKAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAI 60
Query: 436 PAIEAV---LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
PAIE V L+A VLILCPTRELA Q+A E L G+ L + G
Sbjct: 61 PAIERVDGNLRAPQ-----------VLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYG 109
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G + R L D QI++ TPGR++DH+E K+ +RL + M++LDEAD +LD+GFR
Sbjct: 110 GQSYDRQLRGLR-DGAQIIIGTPGRVMDHLERKT---LRLDQVGMIILDEADRMLDMGFR 165
Query: 553 KDVENIVDCLPRRRQSLLFSATMP 576
D+E I+ P RQ++ FSATMP
Sbjct: 166 DDIETILGQAPAERQTVFFSATMP 189
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP ++A+ GY + T +Q + L G+D + A+TGTGK+ AF+LP +E
Sbjct: 3 FAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K S+S + + P+ LIL PTRELA QIA A A K + + + GG
Sbjct: 63 LKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTK-YLPLRSTVVFGGMNMDPQT 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L +IL+ATPGRLLDH+ K +V+L + +LVLDEAD +LD+GF D+ I+
Sbjct: 122 QELRRG-VEILIATPGRLLDHVGQK---TVQLNKVDVLVLDEADRMLDMGFINDIRKILG 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LPR RQ+LLFSAT E+
Sbjct: 178 MLPRTRQTLLFSATFAPEI 196
>gi|359726968|ref|ZP_09265664.1| superfamily II DNA/RNA helicase [Leptospira weilii str. 2006001855]
Length = 542
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 126/201 (62%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P +
Sbjct: 2 KFEELSLHPKLLLAIQEIGYTELTPIQERSIPHGLEGKDITGLAQTGTGKTVAFLIPVVH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + + L+L PTREL QIA EA LLK+ DG + ++GGT +K
Sbjct: 62 TIL-------TKNIQKVSALVLAPTRELTIQIADEAKKLLKHSDGTRAVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D + KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMV--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LLFSAT+ E++
Sbjct: 171 HKCKNRKQTLLFSATLSVEVM 191
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP ++A+ GY Q T +QE + L G+D + A+TGTGK+ AF+LP +E
Sbjct: 3 FSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K ++S + + PI L+L PTRELA QI + + + T+ GG
Sbjct: 63 LKKFANTSVSPAMHPIRALVLSPTRELADQIGVN-VQTYTKYLPLRATTVFGGVNMDPQT 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L +IL+ATPGRLLDHI+ K +V+L +++LVLDE D +LD+GF +D+ I+
Sbjct: 122 QELRRG-VEILIATPGRLLDHIQQK---TVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMG 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ RQ+LLFSAT E+
Sbjct: 178 MLPKERQTLLFSATFAPEI 196
>gi|323446433|gb|EGB02597.1| hypothetical protein AURANDRAFT_35093 [Aureococcus anophagefferens]
Length = 465
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 138/236 (58%), Gaps = 23/236 (9%)
Query: 376 LSQKRFD--ECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
++ RFD +S T+KA+ GY MT+VQE L C G+D V KAKTGTGK++A
Sbjct: 1 MTAARFDGYRGVVSDGTLKAIAEVLGYETMTKVQEQALPVCTRGRDVVAKAKTGTGKTLA 60
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
F++P ++ +A +S + I L+L PTRELA Q E LL + G+ + +VG
Sbjct: 61 FMIPCVD---RAAASKAKRGGSKISALVLSPTRELAQQTLEEG-RLLSHFHGLTLACVVG 116
Query: 493 GTRFKVDQRRLESDPCQ----ILVATPGRLLDHIENKSGLSV-RLMGLKMLVLDEADHLL 547
GT K D R L P ILVATPGRL DH+EN +G + L GL+ LV DEAD LL
Sbjct: 117 GTPIKKDYRALGCAPGSRAPDILVATPGRLNDHLENSAGFARDTLGGLECLVFDEADQLL 176
Query: 548 DLGFRKDVENIVDCLPR---RRQSLLFSATMPKE------LVLK--REHTYIDTVG 592
D+GFR +E ++ + RQ+LLFSAT+P + L +K ++ ++DTVG
Sbjct: 177 DMGFRPAIEQMLRAIQATRLTRQTLLFSATLPADVKGIAKLSMKDGSDYDFVDTVG 232
>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CMR15]
Length = 481
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++AL +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 3 FDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQN 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+ + +A H + + GG
Sbjct: 63 LLPDASTSASPARHPVRALILTPTRELADQV-YDNVAKYAKHTALRSAVVFGGVDMNPQT 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L ++LVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 122 EQLRRG-VEVLVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 178 LLPAHRQTLLFSATFSPEI 196
>gi|372490012|ref|YP_005029577.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356565|gb|AEV27736.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 474
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RFDE G++P +KA+T GY + T +Q+ + L+GKD A+TGTGK+ AF LP I+
Sbjct: 2 RFDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L ++S + P+ L+L PTRELA Q+ E++ + + L GG K
Sbjct: 62 RLLHLDTASPSPAKHPVRALMLAPTRELALQV-YESVKSYTKYTHFRSICLFGGVDIKPQ 120
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++ + +VATPGRLLDH+E K SV ++ LVLDEAD +LD+GF D++ I+
Sbjct: 121 IAEMKKG-VEFVVATPGRLLDHVEQK---SVSFNQVQALVLDEADRMLDMGFIPDIQRIL 176
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP+ RQSLLFSAT E+
Sbjct: 177 NMLPKTRQSLLFSATFSNEI 196
>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
gi|167652390|gb|EDR96519.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 466
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 130/212 (61%), Gaps = 12/212 (5%)
Query: 369 KREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTG 428
+++ E + RFDE I+ +KA+ G+ + +Q A + LEG+D V +A+TGTG
Sbjct: 3 EKDTEEFMDAVRFDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTG 62
Query: 429 KSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
K+ AF +P +E + T++ P +ILCPTRELA Q+A E L K G VL
Sbjct: 63 KTAAFGIPLLEKM-------DTKVKKP-QAMILCPTRELAIQVADEIRKLAKFMHGAKVL 114
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
+ GG R L++ I+V TPGR++DH+ + ++L LKM+VLDEAD +L+
Sbjct: 115 PIYGGQNITNQIRSLKTG-ANIIVGTPGRIMDHMRRHT---LKLEDLKMVVLDEADEMLN 170
Query: 549 LGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580
+GFR+D+E+I+ +P RQ+LLFSATMPK ++
Sbjct: 171 MGFREDIESILKEVPEERQTLLFSATMPKAIL 202
>gi|156048134|ref|XP_001590034.1| hypothetical protein SS1G_08798 [Sclerotinia sclerotiorum 1980]
gi|154693195|gb|EDN92933.1| hypothetical protein SS1G_08798 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 670
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 142/250 (56%), Gaps = 22/250 (8%)
Query: 376 LSQKRFDECG----ISPLTIKALTA-AGYIQMTRVQEATLSACL-EGKDAVVKAKTGTGK 429
L RF + G ++P+ +K +T + M VQ ATL L E D + +AKTGTGK
Sbjct: 70 LDTPRFADLGAENLLNPILLKTITEDLKFDHMMPVQAATLRPLLSERVDCLAQAKTGTGK 129
Query: 430 SIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
+IAFL+PAI+ ++ I +L++ PTRELA QIA EA LLKN V
Sbjct: 130 TIAFLIPAIQTLINKQRRPQDG----ISLLVMTPTRELAQQIAKEASQLLKNLPNYKVGF 185
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549
+GGT +++ + + C IL+ATPGRL DH+ ++ G++ L +VLDEAD LLD+
Sbjct: 186 AIGGTNKTTEEKNILNG-CNILIATPGRLFDHLSDE-GITNAFRNLDTIVLDEADRLLDM 243
Query: 550 GFRKDVENIVDCLP----RRRQSLLFSATMP------KELVLKREHTYIDTVGLGSVETP 599
GF + +I+ CLP +RQ +LFSAT+ LVL +++ +I T+ G V T
Sbjct: 244 GFMNAIRDIIKCLPDKQKTKRQGMLFSATIAPHVEKVAHLVLSKDYKFISTIPEGEVNTH 303
Query: 600 VKVSKYNIYV 609
+V ++ I V
Sbjct: 304 ARVPQHLITV 313
>gi|402075491|gb|EJT70962.1| hypothetical protein GGTG_11985 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 613
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 130/225 (57%), Gaps = 19/225 (8%)
Query: 399 YIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
+ +MT VQ AT+ + + D + +AKTGTGK+IAFLLPAI+A+L+ S I
Sbjct: 141 FDRMTPVQAATIRHLVTDRGDVLAQAKTGTGKTIAFLLPAIQALLRRDRSRGNA----IS 196
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
+L++ PTRELA QIA EA LL+ I V T +GGT +++R+ CQIL+ TPGR
Sbjct: 197 LLVISPTRELALQIAKEAEMLLQRMPSIKVATAIGGTNKNAEEKRILRG-CQILIGTPGR 255
Query: 518 LLDHIEN---KSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLL 570
+ DH+ S + L GL LVLDEAD LLD+GF ++ IV CLP R RQ +L
Sbjct: 256 IFDHLTTDGKNSEIRAMLQGLDTLVLDEADRLLDMGFLPSLKQIVSCLPPRDKVPRQGML 315
Query: 571 FSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
FSATM + L + +I T+ G T +V ++ + V
Sbjct: 316 FSATMADHVAKVANIALAPGYKFISTIAAGEKNTHDRVPQHLVVV 360
>gi|333397027|ref|ZP_08478840.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gelidum KCTC 3527]
gi|406600414|ref|YP_006745760.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gelidum JB7]
gi|406371949|gb|AFS40874.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gelidum JB7]
Length = 542
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 121/198 (61%), Gaps = 15/198 (7%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+T GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKV 498
+ + I LI+ PTRELA Q A E L HD + V + GG +
Sbjct: 62 HIDLDNKN--------IQALIVSPTRELAIQTAEELKKL--GHDKHVDVQVVFGGADIRR 111
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF +D+E+I
Sbjct: 112 QIQNLKSHP-QILVGTPGRLLDHINRK---TVKIEHVKTLVLDEADEMLNMGFLEDIESI 167
Query: 559 VDCLPRRRQSLLFSATMP 576
+ P RQ+LLFSATMP
Sbjct: 168 IKNTPAERQTLLFSATMP 185
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S FD+ G++P +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ LIL PTRELA Q+AA + K H + + GG
Sbjct: 69 IIQRLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAK-HTALRSAVVFGGVDM 127
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++
Sbjct: 128 NPQSDQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQ 183
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 184 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 214
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S FD+ G++P +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP
Sbjct: 35 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 94
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ LIL PTRELA Q+AA + K H + + GG
Sbjct: 95 IIQRLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAK-HTALRSAVVFGGVDM 153
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++
Sbjct: 154 NPQSDQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQ 209
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 210 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 240
>gi|384500298|gb|EIE90789.1| hypothetical protein RO3G_15500 [Rhizopus delemar RA 99-880]
Length = 646
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 148/262 (56%), Gaps = 16/262 (6%)
Query: 358 NKLNGNGE--KKEKREEEPILSQKRFDEC-GISPLTIKALTAA-GYIQMTRVQEATLSAC 413
N+L+ E K ++ EP+ +Q RFD I+ T KAL Y M+ VQEA L+
Sbjct: 55 NQLSATAELLKSQETTIEPVEAQ-RFDAIQAITGNTQKALKKVFRYDTMSAVQEAVLTRL 113
Query: 414 LEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473
D VKAKTGTGK++AFL+ AIE ++ + + ++I+ PTRELA+QIA
Sbjct: 114 PNQDDMFVKAKTGTGKTLAFLIAAIETAVR--NQKDLKHFDGTSIMIISPTRELANQIAD 171
Query: 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533
EA L+ + V LVGG + +LE + C I+VATPGRL D + +
Sbjct: 172 EAQKLVSFYP-FKVHCLVGGDSKRRQINQLERNRCDIVVATPGRLYDMLTSVPRFKKMCQ 230
Query: 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLP-RRRQSLLFSATMPKEL-------VLKREH 585
LK+LVLDEAD LLD+GF++D++NI+ LP RQ++LFSAT+ E+ LK +
Sbjct: 231 NLKVLVLDEADQLLDMGFKRDLQNILGELPDENRQTMLFSATISPEIRKNLGDFALKSSY 290
Query: 586 TYIDTVGLGSVETPVKVSKYNI 607
IDTVG V T + V + I
Sbjct: 291 QLIDTVGENEVNTHMHVKQSAI 312
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 6/212 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S FD+ G++P +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ LIL PTRELA Q+AA + K H + + GG
Sbjct: 69 IIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAK-HTALRSAVVFGGVDM 127
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++
Sbjct: 128 NPQSEQLRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQ 183
Query: 557 NIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
I++ LP+ RQ+LLFSAT E + K TY+
Sbjct: 184 RILNLLPKERQTLLFSATFSGE-IKKLAATYL 214
>gi|302503302|ref|XP_003013611.1| DEAD box RNA helicase HelA, putative [Arthroderma benhamiae CBS
112371]
gi|291177176|gb|EFE32971.1| DEAD box RNA helicase HelA, putative [Arthroderma benhamiae CBS
112371]
Length = 647
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 166/327 (50%), Gaps = 27/327 (8%)
Query: 315 KMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEP 374
++ +++L K+ ++ R+P+ L F + + N ++ E E
Sbjct: 19 RLPVTSTLAKHSIR---RLPIAPLLTSRGFHASPQF---RVPAGTANAGVAVEDAGEAEL 72
Query: 375 ILSQKRFDECGI-SPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
I E G+ I A+T G MT VQ T++ ++G D + +AKTGTGK++A
Sbjct: 73 ITEFAELGEKGVVDQRLINAITKGMGLKTMTDVQAQTINESIQGIDMIAQAKTGTGKTVA 132
Query: 433 FLLPAIEAVLKATSSSTTQL----VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
FLLP I +L+ + + I +++ PTRELA QIA EA + + G+ V
Sbjct: 133 FLLPVIHRILQDPTLGNLRRNFASAQDIRAVVISPTRELAEQIAVEAQKITRG-SGLKVQ 191
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
T VGGTR + RL+ + C ILV TPGRL+D + + V L+ VLDEAD LLD
Sbjct: 192 TAVGGTRKREGLMRLQREGCHILVGTPGRLMDLFSDPTS-GVAAPKLQAFVLDEADRLLD 250
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------VLKREHTYIDTVGLGSVET 598
+GF D+E I P R RQ+L+FSAT+PK + +LK + T+++TVG ET
Sbjct: 251 IGFAPDIERIQSFFPSRSQVDRQTLMFSATIPKSVKGLARSMLKPDFTFVNTVG---DET 307
Query: 599 PVKVSKYNIYVFVLVLSIKIQAFYIIC 625
P + VF+ ++ A + I
Sbjct: 308 PTHLRVPQRAVFLRGFENQLPALFEIA 334
>gi|268679387|ref|YP_003303818.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
gi|268617418|gb|ACZ11783.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
DSM 6946]
Length = 463
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 119/189 (62%), Gaps = 12/189 (6%)
Query: 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT 450
++ LT GY MT +QEA+L LEG+D V KAKTG+GK++AF LP + A+
Sbjct: 18 LETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLAL------HVK 71
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
Q+ I ++LCPTRELA Q++AE L I ++TL GG RF LE I
Sbjct: 72 QM--RIQSVVLCPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCISLEHGA-HI 128
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+V TPGR+L H++ K+ + +K LVLDEAD +LD+GF +D+E I+ +P+ RQ+LL
Sbjct: 129 VVGTPGRILQHLQEKT---INFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLL 185
Query: 571 FSATMPKEL 579
FSAT P+E+
Sbjct: 186 FSATFPREI 194
>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 460
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 121/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++P ++AL GY+ T +Q + L+G D + A+TGTGK+ AF LP I+
Sbjct: 4 FAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQR 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++ST+ PI LIL PTRELA Q+ EAI H + L + GG
Sbjct: 64 LLPFANTSTSPAKHPIRALILTPTRELAIQV-EEAIQAYTKHVPLRSLVVYGGVNINTQI 122
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L++ +ILVATPGRLLDH++NK ++ L + LVLDEAD +LD+GF D+ IV
Sbjct: 123 PILKTG-VEILVATPGRLLDHVQNK---TLMLTQVNTLVLDEADRMLDMGFMPDLRRIVA 178
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +R +++FSAT P+E+
Sbjct: 179 LLPAQRVNMMFSATFPEEI 197
>gi|159479594|ref|XP_001697875.1| hypothetical protein CHLREDRAFT_151537 [Chlamydomonas reinhardtii]
gi|158273973|gb|EDO99758.1| predicted protein [Chlamydomonas reinhardtii]
Length = 617
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 128/228 (56%), Gaps = 16/228 (7%)
Query: 376 LSQKRFDECGISPLTIKALTAA-GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
LS +F E ISP + +AL Y + + VQ A++ CL D + KAKTGTGK++AF+
Sbjct: 27 LSDTKFAEFKISPDSKRALAEVLKYERCSLVQAASIPVCLGPDDVIAKAKTGTGKTLAFI 86
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+P IE VL + + L+L PTRELA QI E +L H G+ + + GG
Sbjct: 87 IPTIEKVLANRAPRGK-----VSALVLSPTRELARQIQTETHKMLTYHPGLHSMVVYGGV 141
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKS--GLSVRLMGLKMLVLDEADHLLDLGFR 552
K + R L IL+ATPGR D + L+ L ++LVLDEAD+LLD+GFR
Sbjct: 142 DVKKNLRALVQKTPDILIATPGRCWDIMTQAHDRSLTTVLDSTRVLVLDEADNLLDMGFR 201
Query: 553 KDVENIVDCLP--RRRQSLLFSATMP------KELVLKREHTYIDTVG 592
+ I+ LP +RQ+ LFSAT P ++ LKR+H+Y+D VG
Sbjct: 202 PQISKILSALPPTTQRQTFLFSATFPGDVKSLADVALKRKHSYVDAVG 249
>gi|451823382|ref|YP_007459656.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776182|gb|AGF47223.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 480
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 123/200 (61%), Gaps = 8/200 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ GI+P I A+ A G+ T VQ AT+ + +D VV A+TG+GK+ AF+LP +
Sbjct: 3 FENLGINPNIISAIKATGFESPTPVQNATIPKAILRQDLVVSAQTGSGKTAAFILPILNH 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + SS T I VLIL PTRELA QI A + N + + T+VGG ++
Sbjct: 63 LSQMPKSSNT----AIQVLILTPTRELAMQITKAASSYGSNFHWLRMATIVGGMPYQSQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S ILVATPGRL+D ++ SG V L + LVLDEAD +LD+GF +D++NIV
Sbjct: 119 KAL-SKRIDILVATPGRLIDQMQ--SG-RVNLKSVHTLVLDEADRMLDMGFIEDIQNIVS 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP+ RQ++LFSAT+ ++
Sbjct: 175 HLPKERQTMLFSATLDNSIM 194
>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 439
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 122/195 (62%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI+P ++AL AAGY T VQ + A + G+D +V A+TG+GK+ AFLLPA+
Sbjct: 3 FSDLGIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAFLLPALT- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
K + ST + P VL+L PTRELA Q+ A+ K+ + LVGG+ F
Sbjct: 62 --KLSERSTAKGQGP-RVLVLTPTRELAQQVEKNALEYGKDLRWMRTACLVGGSSFGYQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L S P ++VATPGRL+DH+ +SG + L+MLVLDEAD +LD+GF D+E IV
Sbjct: 119 RAL-SRPIDLIVATPGRLMDHM--RSG-RIDFSRLEMLVLDEADRMLDMGFIDDIEAIVK 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ++LFSAT+
Sbjct: 175 ATPETRQTVLFSATL 189
>gi|408790906|ref|ZP_11202517.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408464935|gb|EKJ88659.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 536
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E KAL GY +T +Q ++ +EG D A+TGTGK++AFLLP +
Sbjct: 2 KFNELPFHESLTKALEKIGYTDLTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTLH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L AT P Y L+L PTREL QIA EA LL+ D GV T++GGT ++
Sbjct: 62 RLLSATEEE-----PLPYALVLAPTRELTIQIAEEAKKLLEFTD-FGVATIIGGTDYRSQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++ L + C ++VATPGRL+D ++N GLS L +K+++LDEAD + D+GF +D++ I
Sbjct: 116 EQALGNKAC-LIVATPGRLIDFVKN-HGLS--LENIKVVILDEADRMFDMGFVQDLKYIF 171
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+QSLLFSAT+ E+V
Sbjct: 172 HKCKNRKQSLLFSATLSYEVV 192
>gi|302666595|ref|XP_003024895.1| DEAD box RNA helicase HelA, putative [Trichophyton verrucosum HKI
0517]
gi|291188971|gb|EFE44284.1| DEAD box RNA helicase HelA, putative [Trichophyton verrucosum HKI
0517]
Length = 643
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 166/327 (50%), Gaps = 27/327 (8%)
Query: 315 KMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEP 374
++ +++L K+ ++ R+P+ L F + + N ++ E E
Sbjct: 19 RLPVTSTLAKHSIR---RLPIAPLLTSRAFHSSPQF---RVPAGTANAGVAVEDAGEAEL 72
Query: 375 ILSQKRFDECGI-SPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
I E G+ I A+T G MT VQ T++ ++G D + +AKTGTGK++A
Sbjct: 73 ITEFAELGEKGVVDQRLINAITKGMGLKTMTDVQAQTINESIQGIDMIAQAKTGTGKTVA 132
Query: 433 FLLPAIEAVLKATSSSTTQL----VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
FLLP I +L+ + + I +++ PTRELA QIA EA + + G+ V
Sbjct: 133 FLLPVIHRILQDPTLGNLRRNFASAQDIRAVVISPTRELAEQIAVEAQKITRG-SGLKVQ 191
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
T VGGTR + RL+ + C ILV TPGRL+D + + V L+ VLDEAD LLD
Sbjct: 192 TAVGGTRKREGLMRLQREGCHILVGTPGRLMDLFSDPTS-GVAAPKLQAFVLDEADRLLD 250
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------VLKREHTYIDTVGLGSVET 598
+GF D+E I P R RQ+L+FSAT+PK + +LK + T+++TVG ET
Sbjct: 251 IGFAPDIERIQSFFPSRSQVDRQTLMFSATIPKSVKGLARSMLKPDFTFVNTVG---DET 307
Query: 599 PVKVSKYNIYVFVLVLSIKIQAFYIIC 625
P + VF+ ++ A + I
Sbjct: 308 PTHLRVPQRAVFLRGFENQLPALFEIA 334
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G++P ++A+ GY + T +Q + + GKD + A+TGTGK+ AF LP ++
Sbjct: 25 FADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPILQR 84
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L SSS + P+ LIL PTRELA Q+ E++ H I + GG +
Sbjct: 85 ILPFASSSPSPAKHPVRALILAPTRELAMQV-FESVKTYSKHTPIRAMCAYGGVDIRPQI 143
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ +ILVATPGRLLDH+ENK SV ++ LVLDEAD +LD+GF DV I++
Sbjct: 144 AELKKG-VEILVATPGRLLDHVENK---SVSFNSVQALVLDEADRMLDMGFVPDVTRILN 199
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQSLLFSAT +E+
Sbjct: 200 MLPAQRQSLLFSATFSEEI 218
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 124/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++P +KA+ GY + T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA + K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAK-HTALRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKARQTLLFSATFSPE-IKKLAATYL 214
>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase [Haliscomenobacter hydrossis DSM 1100]
gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
DSM 1100]
Length = 516
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 128/205 (62%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ Q F E +S A+ G+ + T +Q + L GKD + +A+TGTGK+ AF +
Sbjct: 1 MKQLNFSELALSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E++ +T + ++LCPTRELA Q+A E L K G+ + T+ GG
Sbjct: 61 PLLESIDCSTRE--------VAAIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDS 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ + L++ P Q++V TPGR++DH++ K+ +RL ++M VLDEAD +L++GFR+D+
Sbjct: 113 IQRQLKELKAGP-QVVVGTPGRVMDHLQRKT---LRLDHIQMAVLDEADEMLNMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
EN+++ +P RQ++LFSATMP+ ++
Sbjct: 169 ENVLNQMPETRQTVLFSATMPRPIL 193
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF++ G+SP +KAL+ GY+ T +Q + L+G+D + A+TGTGK+ F LP I+
Sbjct: 17 RFEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L S S + P+ LIL PTRELA Q+ AE + + + GG
Sbjct: 77 RLLAHASHSASPARHPVRALILTPTRELADQV-AENVKAYSRFTPLRSTVVFGGVDMAPQ 135
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L + +I++ATPGRLLDH++ K +V L ++LV+DEAD +LD+GF D++ I+
Sbjct: 136 TATLRAG-VEIVIATPGRLLDHVQQK---TVNLSQTQILVMDEADRMLDMGFLPDLQRII 191
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT E+
Sbjct: 192 NLLPKQRQNLLFSATFSPEI 211
>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 397
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 128/205 (62%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S K F + GIS T+K+L GY + T +QE + A L GKD V +A+TGTGK+ AF +
Sbjct: 1 MSNKTFKDLGISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E+V +T Q I L+L PTRELA Q+A E L KN + VL++ GG
Sbjct: 61 PIVESV------NTKQ--KKIQALVLVPTRELAIQVAKEIKDLGKNKK-VFVLSVYGGKS 111
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
K L+ ++V TPGR+ D +E G ++L +KM VLDEAD +L++GF +D+
Sbjct: 112 MKHQIDFLKKGNDVVIVGTPGRVKDLLER--GF-LKLDNVKMFVLDEADRMLEMGFIEDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E+I+ LP RQ+LLFSATMPKE++
Sbjct: 169 EDIMSYLPEDRQNLLFSATMPKEIL 193
>gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
gi|167664425|gb|EDS08555.1| DEAD/DEAH box helicase [Clostridium scindens ATCC 35704]
Length = 526
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 126/205 (61%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ + RF++ G+ P +KA+ G+ + + +Q + A LEGKD + +A+TGTGK+ AF +
Sbjct: 1 MEEARFEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E + + ++LCPTRELA Q+A E L K I VL + GG
Sbjct: 61 PLLEKIDPKNKK--------LQAIVLCPTRELAIQVAEEIRNLAKYMHAIKVLPIYGGQE 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
R L+S Q+++ TPGR++DH+ K+ V++ + +VLDEAD +L++GFR+D+
Sbjct: 113 IVKQIRSLKSG-TQLIIGTPGRVMDHMRRKT---VKMENVHTVVLDEADEMLNMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I++ +P RQ++LFSATMPK ++
Sbjct: 169 ETILEGVPEERQTVLFSATMPKPIL 193
>gi|170103060|ref|XP_001882745.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642116|gb|EDR06373.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 444
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 122/192 (63%), Gaps = 14/192 (7%)
Query: 408 ATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTREL 467
ATL L G D +V+AKTGTGK+IAFLLPAIE +LKA ++ + +L+L PTREL
Sbjct: 2 ATLDLALAGNDLLVQAKTGTGKTIAFLLPAIERLLKAPVNTRRG----VSILVLSPTREL 57
Query: 468 ASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSG 527
A QI EA LL +H V +GGT + +RL + PC ILVATPGRLLDH+ + S
Sbjct: 58 ALQIQKEAETLLAHHT-FSVQHAIGGTNQTAELKRLINSPCDILVATPGRLLDHLRSSS- 115
Query: 528 LSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR--RQSLLFSATMPKEL------ 579
L RL LK +V DEAD LLD GF+ ++ I LP R RQ+LLFSAT+ KE+
Sbjct: 116 LPDRLSELKTIVYDEADRLLDQGFKPALDAISGFLPPRHTRQALLFSATVSKEIKAVAAG 175
Query: 580 VLKREHTYIDTV 591
L+ ++++ T+
Sbjct: 176 ALRPGYSFVSTL 187
>gi|58268036|ref|XP_571174.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57227408|gb|AAW43867.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 606
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 137/234 (58%), Gaps = 32/234 (13%)
Query: 376 LSQKRF-DECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+ + RF D G+SP +L + T VQ ATL L G D + +AKTGTGK++AFL
Sbjct: 66 IDRPRFRDFNGLSPEIFPSLP---FETCTEVQAATLPTILAGDDVLAQAKTGTGKTLAFL 122
Query: 435 LPAIEAVLKATSSSTTQLVPP---IYVLILCPTRELASQI--AAE--AIALLKNHDGIGV 487
+P ++ +L A +PP +LIL PTRELA QI AE + AL K G
Sbjct: 123 VPVVQRLLSAP-------MPPSALTSILILSPTRELAQQINEVAERMSTALSKK---FGT 172
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
++VGGT D + L+S ILVATPGRLLD +EN G+ R LKM+VLDEAD LL
Sbjct: 173 RSVVGGTNMDRDIKNLKSKRADILVATPGRLLDLMEN-GGIKARFAQLKMIVLDEADRLL 231
Query: 548 DLGFRKDVENIVDCLPR----RRQSLLFSATMPKE------LVLKREHTYIDTV 591
D GFR+++ I D LP RQ+LLFSAT+P E + L++++ +I T+
Sbjct: 232 DAGFRRELVKIFDYLPAPHAVPRQTLLFSATLPTEVHSIASIALRKDYKFITTL 285
>gi|134112533|ref|XP_775242.1| hypothetical protein CNBE5150 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257894|gb|EAL20595.1| hypothetical protein CNBE5150 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 606
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 137/234 (58%), Gaps = 32/234 (13%)
Query: 376 LSQKRF-DECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+ + RF D G+SP +L + T VQ ATL L G D + +AKTGTGK++AFL
Sbjct: 66 IDRPRFRDFNGLSPEIFPSLP---FETCTEVQAATLPTILAGDDVLAQAKTGTGKTLAFL 122
Query: 435 LPAIEAVLKATSSSTTQLVPP---IYVLILCPTRELASQI--AAE--AIALLKNHDGIGV 487
+P ++ +L A +PP +LIL PTRELA QI AE + AL K G
Sbjct: 123 VPVVQRLLSAP-------MPPSALTSILILSPTRELAQQINEVAERMSTALSKK---FGT 172
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
++VGGT D + L+S ILVATPGRLLD +EN G+ R LKM+VLDEAD LL
Sbjct: 173 RSVVGGTNMDRDIKNLKSKRADILVATPGRLLDLMEN-GGIKARFAQLKMIVLDEADRLL 231
Query: 548 DLGFRKDVENIVDCLPR----RRQSLLFSATMPKE------LVLKREHTYIDTV 591
D GFR+++ I D LP RQ+LLFSAT+P E + L++++ +I T+
Sbjct: 232 DAGFRRELVKIFDYLPAPHAVPRQTLLFSATLPTEVHSIASIALRKDYKFITTL 285
>gi|339480712|ref|ZP_08656371.1| superfamily II DNA/RNA helicase [Leuconostoc pseudomesenteroides
KCTC 3652]
Length = 516
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 120/198 (60%), Gaps = 15/198 (7%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+ GY++ T +QE T+ L G+D + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAIKTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKV 498
+ + I LI+ PTRELA Q A E L HD + V + GG +
Sbjct: 62 HIDLENKN--------IQALIVSPTRELAIQTAEELKKL--GHDKHVDVQVVFGGADIRR 111
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L+S P QILV TPGRLLDHI K+ VRL ++ LVLDEAD +L++GF D+E+I
Sbjct: 112 QIQNLKSHP-QILVGTPGRLLDHINRKT---VRLDHVRTLVLDEADEMLNMGFLDDIESI 167
Query: 559 VDCLPRRRQSLLFSATMP 576
+D P RQ+LLFSATMP
Sbjct: 168 IDKTPAERQTLLFSATMP 185
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 121/200 (60%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + G++P +KAL GY+ T +Q + L+G D + A+TGTGK+ F LP I+
Sbjct: 24 RFQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQ 83
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ +SS + P+ LIL PTRELA Q+AA A + H + L + GG
Sbjct: 84 LLMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSR-HTPLRSLVVFGGMDMTPQ 142
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L +I++ATPGRLLDH++ K ++ L ++LV+DEAD +LD+GF D++ I+
Sbjct: 143 TAALRGG-VEIVIATPGRLLDHVQQK---TINLSQTQILVMDEADRMLDMGFLPDLQRII 198
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+L+FSAT E+
Sbjct: 199 NLLPKQRQNLMFSATFSPEI 218
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++AL +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 17 FDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQN 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+ + +A H + + GG
Sbjct: 77 LLPDANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKHTALRSAVVFGGVDMNPQT 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L ++LVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 136 EQLRRG-VEVLVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 192 LLPAHRQTLLFSATFSPEI 210
>gi|336422222|ref|ZP_08602374.1| hypothetical protein HMPREF0993_01751 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009132|gb|EGN39130.1| hypothetical protein HMPREF0993_01751 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 526
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 128/206 (62%), Gaps = 14/206 (6%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ + RF++ G+ P +KA+ G+ + + +Q + A LEGKD + +A+TGTGK+ AF +
Sbjct: 1 MEEARFEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAV-LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
P +E + LK + ++LCPTRELA Q+A E L K I VL + GG
Sbjct: 61 PLLEKIDLKNKK---------LQAIVLCPTRELAIQVAEEIRNLAKYMHAIKVLPIYGGQ 111
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R L+S Q+++ TPGR++DH+ K+ V++ + +VLDEAD +L++GFR+D
Sbjct: 112 EIVKQIRSLKSG-TQLIIGTPGRVMDHMRRKT---VKMENVHTVVLDEADEMLNMGFRED 167
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I++ +P RQ++LFSATMPK ++
Sbjct: 168 IETILEGVPEERQTVLFSATMPKPIL 193
>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gasicomitatum LMG 18811]
gi|333446960|ref|ZP_08481902.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc inhae KCTC 3774]
gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
[Leuconostoc gasicomitatum LMG 18811]
Length = 538
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+T GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I LI+ PTRELA Q A E L ++ + V + GG +
Sbjct: 62 HIDLDNKN--------IQALIVSPTRELAIQTAEELKKLGRDKH-VDVQVVFGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF +D+E+I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHINRK---TVKIEHVKTLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSATMP
Sbjct: 169 KNTPAERQTLLFSATMP 185
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 122/200 (61%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF++ G+SP ++ALT GY+ T +Q + L+G+D + A+TGTGK+ F LP I+
Sbjct: 17 RFEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L S+S + P+ LIL PTRELA Q+ A+ + + + GG
Sbjct: 77 LLLAHASTSASPARHPVRALILTPTRELADQV-ADNVKAYSRFTPLRSTVVFGGVDMAPQ 135
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L + +I++ATPGRLLDH++ K +V L ++LV+DEAD +LD+GF D++ I+
Sbjct: 136 TATLRAG-VEIVIATPGRLLDHVQQK---TVNLSQTQILVMDEADRMLDMGFLPDLQRII 191
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+L+FSAT E+
Sbjct: 192 NLLPKKRQNLMFSATFSPEI 211
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 5/203 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+++ F+ G+ P ++ALT GY + T +Q + L GKD + A+TGTGK+ F LP
Sbjct: 13 AEQTFESFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 72
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L ++S + P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 73 IIQRLLPLANASASPARHPVRALMLTPTRELADQV-YDNVARYAKHTDLRSTVVFGGVDM 131
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++
Sbjct: 132 NPQTDALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQ 187
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
I++ LP +RQ+LLFSAT E+
Sbjct: 188 RIINLLPAQRQTLLFSATFSPEI 210
>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 533
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G+ P ++A+T G+ + T +Q ++ L GKD + +A+TGTGK+ AF LP I
Sbjct: 2 KNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ K I LI+ PTRELA Q+A E I L GI L + GG
Sbjct: 62 HKIAKEEER--------IVALIMTPTRELAIQVAEE-IGKLSRFKGIRSLAIYGGQDIGR 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ +RL ++ +VLDEAD +LD+GF +D+++I
Sbjct: 113 QIRALKRKP-QIIIGTPGRLLDHINRKT---IRLDDVQTVVLDEADEMLDMGFMEDIQSI 168
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ +P RQ+LLFSATMP +
Sbjct: 169 LKLVPEERQTLLFSATMPANI 189
>gi|397643063|gb|EJK75628.1| hypothetical protein THAOC_02639 [Thalassiosira oceanica]
Length = 580
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 136/231 (58%), Gaps = 17/231 (7%)
Query: 376 LSQKRFDECGISPLTIKALTAA-GYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSIA 432
+++ RF + I+ + +A+ Y MT VQ TL L G+D + KAKTGTGK++A
Sbjct: 95 MTESRFADLPIAAESRRAMAEVFRYETMTEVQAKTLPLILADGGRDCMAKAKTGTGKTLA 154
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK--NHDGIGVLTL 490
F++P +E ++ + + I L++ PTRELA QI AE LL+ N+ V+
Sbjct: 155 FMIPTVEKLMVHMKKNNARASRDIGCLVISPTRELAQQIGAETEKLLRFQNNSMRKVVVC 214
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
VGGT D R LE I++ATPGRLLDH+E SGL+ R+ L LV DEAD LLD+G
Sbjct: 215 VGGTNRNKDVRALEG-VTPIVIATPGRLLDHLE--SGLAERMANLDTLVFDEADQLLDMG 271
Query: 551 FRKDVENIVDCL---PRRRQSLLFSATMPKE------LVLKREHTYIDTVG 592
FR DV I+ L RQ+LLFSAT+P + + ++ ++ ++DTVG
Sbjct: 272 FRPDVLRILKFLQPSASTRQTLLFSATIPDQVEVIAGIAMRPQYNFVDTVG 322
>gi|225166117|ref|ZP_03727846.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
gi|224799638|gb|EEG18138.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
Length = 606
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 18/200 (9%)
Query: 383 ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV- 441
E G+SP +KA+ G+ + + +Q A + L G D V ++ TG+GK+ AF LPAIE V
Sbjct: 2 ELGLSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERVD 61
Query: 442 --LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
LKA + VLILCPTRELA Q+A E L G+ + + GG ++
Sbjct: 62 TKLKA-----------VQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQ 110
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L + Q+++ TPGR++DH+E + ++L L M++LDE D +LD+GFR D+E+I+
Sbjct: 111 FRALAAG-AQVVIGTPGRVMDHMERGT---LKLDKLSMVILDECDRMLDMGFRDDIEHIL 166
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P +RQSL FSATMP+E+
Sbjct: 167 KSVPEQRQSLFFSATMPREI 186
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 123/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++P +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 36 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 95
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 96 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQS 154
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 155 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 210
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 211 LLPKERQTLLFSATFSGE-IKKLASTYL 237
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 123/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++P +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 35 FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 95 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQS 153
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 154 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 210 LLPKERQTLLFSATFSGE-IKKLASTYL 236
>gi|437999624|ref|YP_007183357.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813247|ref|YP_007449700.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429338858|gb|AFZ83280.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779216|gb|AGF50096.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 468
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 125/199 (62%), Gaps = 8/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ GI+ + AL +G++ T VQEAT+ L GKD +V A+TG+GK+ AF+LP ++
Sbjct: 3 FEKIGINSNILSALKTSGFVSPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPILQM 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + S+ + P VL+L PTRELA QI + N + + T+VGG ++ +Q
Sbjct: 63 LSQKPKSNN---INP-QVLVLTPTRELALQITKATASYGINMPWLRIATIVGGMPYR-NQ 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R S ILVATPGRL+D +++ V L ++ LVLDEAD +LD+GF +D+E IV
Sbjct: 118 IRALSKRVDILVATPGRLIDQMKSN---KVSLTSIQTLVLDEADRMLDMGFIEDIETIVK 174
Query: 561 CLPRRRQSLLFSATMPKEL 579
PR RQ++LFSAT+ + +
Sbjct: 175 NTPRDRQTMLFSATIDESI 193
>gi|337269131|ref|YP_004613186.1| DEAD/DEAH box helicase domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|336029441|gb|AEH89092.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 525
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+T AGY Q T +Q + L GKD + A+TGTGK+ +F+LP +
Sbjct: 3 FSDLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPMLTR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ I KNH + + L+GG F
Sbjct: 63 LEKGRARARMP-----RTLILEPTRELAAQVEENFIKYGKNHK-LNIALLIGGVSFDEQD 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I +
Sbjct: 117 KKLERG-ADVLIATPGRLLDHRERGKLL---LNGVEILVIDEADRMLDMGFIPDIERICE 172
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 173 MIPFTRQTLFFSATMPPEIT 192
>gi|433775542|ref|YP_007306009.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
gi|433667557|gb|AGB46633.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
Length = 527
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+T AGY+Q T +Q + L GKD + A+TGTGK+ +F+LP +
Sbjct: 14 FSDLGLSPKVLSAVTDAGYLQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPMLTR 73
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + KNH + + L+GG F
Sbjct: 74 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGKNHK-LNIALLIGGVSFDEQD 127
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I +
Sbjct: 128 KKLERG-ADVLIATPGRLLDHRERGKLL---LNGVEILVIDEADRMLDMGFIPDIERICE 183
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 184 MIPFTRQTLFFSATMPPEIT 203
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 122/200 (61%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF++ G+SP +KAL GY+ T +Q + L+G+D + A+TGTGK+ F LP I+
Sbjct: 17 RFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L+ S S + P+ LIL PTRELA Q+ A+ +A + + GG
Sbjct: 77 RLLQHASHSASPARHPVRALILTPTRELADQV-ADNVAAYCRFTPLRSTVVFGGVDMSPQ 135
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L + +I++ATPGRLLDH++ K +V L ++LV+DEAD +LD+GF D++ I+
Sbjct: 136 TAILRAG-VEIVIATPGRLLDHVQQK---TVNLSQTQILVMDEADRMLDMGFLPDLQRII 191
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT E+
Sbjct: 192 NLLPKQRQNLLFSATFSPEI 211
>gi|373858358|ref|ZP_09601095.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372451825|gb|EHP25299.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 560
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 13/206 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GIS + ++ L +G + T +QE + ++G D + +A+TGTGK+ AF+LP +E
Sbjct: 4 FLSMGISEMLVEKLQESGVVTPTPIQEQAIPYVMKGNDIIAQAQTGTGKTFAFILPILEH 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S + LI+ PTRELA QI E L+ + GI VL + GG
Sbjct: 64 LDPEASH--------VQALIVTPTRELALQITGEFKKLINDLPGIDVLAVYGGQDVDKQL 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ + QI+V+TPGRLLDHI + V L + LVLDEAD +L +GF +VE I+D
Sbjct: 116 KKLKKN-VQIVVSTPGRLLDHIRRGT---VNLSEISSLVLDEADQMLQIGFLNEVEEIID 171
Query: 561 CLPRRRQSLLFSATMPKEL-VLKREH 585
P RQ++LFSATMP E+ L R+H
Sbjct: 172 QTPASRQTMLFSATMPPEIRTLARKH 197
>gi|410418009|ref|YP_006898458.1| ATP-dependent RNA helicase [Bordetella bronchiseptica MO149]
gi|408445304|emb|CCJ56953.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
MO149]
Length = 574
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL+ AG+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 15 FEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNR 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + +N G+ T+VGG +
Sbjct: 75 IAHQPGNKGVG----VQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQL 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 131 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 186
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 187 RLPKERQTLLFSATL 201
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RFD + P ++A+ +GY+ MT +Q + L G+D + A+TGTGK+ AF LP ++
Sbjct: 20 RFDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQ 79
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+LK SSST+ P+ L+L PTRELA Q+ A + H + + GG K
Sbjct: 80 KMLKHESSSTSPARHPVRALVLAPTRELADQV-ANNVKTYSKHTQLRATVVFGGIDMKPQ 138
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+ ++L+ATPGRLLDHIE K + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 139 TAELKRG-VEVLIATPGRLLDHIEAK---NCSLSQVEYVVLDEADRMLDIGFLPDLQRIL 194
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP+ RQ+LLFSAT E+
Sbjct: 195 SYLPKSRQTLLFSATFSPEI 214
>gi|427817501|ref|ZP_18984564.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
D445]
gi|410568501|emb|CCN16541.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
D445]
Length = 590
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL+ AG+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 15 FEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNR 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + +N G+ T+VGG +
Sbjct: 75 IAHQPGNKGVG----VQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQL 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 131 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 186
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 187 RLPKERQTLLFSATL 201
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 5/208 (2%)
Query: 372 EEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
E P FD G+ P ++ALT +GY + T +Q A + G+D + A+TGTGK+
Sbjct: 6 EAPANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTA 65
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
F LP I +L ++S + P+ LIL PTRELA Q+ + +A + + +
Sbjct: 66 GFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKYTALRSAVVF 124
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG +L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF
Sbjct: 125 GGVDMNPQTEQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGF 180
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579
D++ I++ LP RQ+LLFSAT E+
Sbjct: 181 LPDLQRIINLLPAHRQTLLFSATFSPEI 208
>gi|418054509|ref|ZP_12692565.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
gi|353212134|gb|EHB77534.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
Length = 532
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 10/205 (4%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ K F + G+SP A+TAAGY+ T +Q A + L G+D + A+TGTGK+ +F+L
Sbjct: 1 MDSKTFADLGLSPKVQAAVTAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P I + + + LIL PTRELA+Q+A NH + + L+GG
Sbjct: 61 PMITRLEAGRARARMP-----RSLILAPTRELAAQVAQSFEKYGTNHK-LSLALLIGGVS 114
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++L+ +L+ATPGRLLDH V LMG+++LV+DEAD +LD+GF D+
Sbjct: 115 MDDQVKKLDRG-VDVLIATPGRLLDHFGRGR---VMLMGVEILVIDEADRMLDMGFIPDI 170
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I LP RRQ+L FSATMP E+
Sbjct: 171 EKICKLLPPRRQTLFFSATMPPEIT 195
>gi|33593984|ref|NP_881628.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205287|ref|YP_005591026.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408416947|ref|YP_006627654.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779117|emb|CCJ64602.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 574
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL+ AG+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 15 FEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNR 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + +N G+ T+VGG +
Sbjct: 75 IAHQPGNKGVG----VQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQL 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 131 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 186
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 187 RLPKERQTLLFSATL 201
>gi|33599198|ref|NP_886758.1| ATP-dependent RNA helicase [Bordetella bronchiseptica RB50]
gi|412340496|ref|YP_006969251.1| ATP-dependent RNA helicase [Bordetella bronchiseptica 253]
gi|427812459|ref|ZP_18979523.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
1289]
gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
RB50]
gi|408770330|emb|CCJ55122.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica 253]
gi|410563459|emb|CCN20993.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
1289]
Length = 574
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL+ AG+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 15 FEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNR 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + +N G+ T+VGG +
Sbjct: 75 IAHQPGNKGVG----VQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQL 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 131 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 186
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 187 RLPKERQTLLFSATL 201
>gi|399517902|ref|ZP_10759437.1| Cold-shock DEAD-box protein A [Leuconostoc pseudomesenteroides
4882]
gi|398647213|emb|CCJ67464.1| Cold-shock DEAD-box protein A [Leuconostoc pseudomesenteroides
4882]
Length = 516
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 120/198 (60%), Gaps = 15/198 (7%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+ GY++ T +QE T+ L G+D + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAIKTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKV 498
+ + I LI+ PTRELA Q A E L HD + V + GG +
Sbjct: 62 HIDLNNKN--------IQALIVSPTRELAIQTADELKKL--GHDKHVDVQVVFGGADIRR 111
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L+S P QILV TPGRLLDHI K+ VRL ++ LVLDEAD +L++GF D+E+I
Sbjct: 112 QIQNLKSHP-QILVGTPGRLLDHINRKT---VRLDHVRTLVLDEADEMLNMGFLDDIESI 167
Query: 559 VDCLPRRRQSLLFSATMP 576
+D P RQ+LLFSATMP
Sbjct: 168 IDKTPAERQTLLFSATMP 185
>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
Length = 495
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 118/199 (59%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S +KA+ +GY + T +QE T+ L GKD + +A+TGTGK+ AF LP IE
Sbjct: 6 FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V P I LI+ PTRELA Q E L K + V + GG +
Sbjct: 66 VDVEN--------PAIQALIISPTRELAIQTEEELFRLGKEKR-VKVQVVYGGADIRRQI 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R LE +P QILV TPGRL DH+ + V L G++ LVLDEAD +L++GF +D+E+I+
Sbjct: 117 RSLEKNP-QILVGTPGRLRDHLRRGT---VDLSGVQTLVLDEADEMLNMGFLEDIEDIIK 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 173 QTPSERQTLLFSATMPPEI 191
>gi|451811659|ref|YP_007448114.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776817|gb|AGF47816.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 456
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 16/236 (6%)
Query: 367 KEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTG 426
KEKRE + Q FD G+ L + ++ + GY T +QE + L G+D + A+TG
Sbjct: 2 KEKRENKN--KQILFDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTG 59
Query: 427 TGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486
TGK+ AF+LP I +L +SST+ + VLIL PTRELA+Q+ + KN + +
Sbjct: 60 TGKTAAFVLPIINKILPYANSSTSPARHLLRVLILVPTRELANQVYDSVVIYSKNTN-LR 118
Query: 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
+ L GG + L+ C+ILVATPGRL+ HIE ++ L +++ VLDEAD +
Sbjct: 119 SVVLFGGADHYNQENNLKLG-CEILVATPGRLIAHIEQG---NLHLQNIEIFVLDEADRM 174
Query: 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKV 602
LD+GF D++ I+ LP+ RQ+L FSAT K ++ +G+ ++ PV++
Sbjct: 175 LDMGFMPDIDKIISKLPKNRQTLFFSATFSK---------FMRKIGMSYLKDPVEL 221
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 123/200 (61%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF++ G++P ++AL+ GY+ T +Q + L+G D + A+TGTGK+ F LP I+
Sbjct: 37 RFEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQ 96
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ +SS + P+ LIL PTRELA Q+ A+ + H + + + GG
Sbjct: 97 LLMAHANSSASPARHPVRALILTPTRELADQV-ADNVKAYSRHTPLRSVVVFGGVDMAPQ 155
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L S +I++ATPGRLLDHI+ K ++ L ++LV+DEAD +LD+GF D++ I+
Sbjct: 156 TAALRSG-VEIVIATPGRLLDHIQQK---TLNLSQTQILVMDEADRMLDMGFLPDLQRII 211
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+L+FSAT E+
Sbjct: 212 NLLPKQRQNLMFSATFSPEI 231
>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 528
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 125/201 (62%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RFDE I+ +KA+ G+ + +Q A + LEG+D V +A+TGTGK+ AF +P +E
Sbjct: 5 RFDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLE 64
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ T++ P +ILCPTRELA Q+A E L K G VL + GG
Sbjct: 65 KM-------DTKVKRP-QAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L++ I+V TPGR++DH+ + ++L LKM+VLDEAD +L++GFR+D+E+I+
Sbjct: 117 IRSLKTG-ANIIVGTPGRIMDHMRRHT---LKLEDLKMVVLDEADEMLNMGFREDIESIL 172
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+P RQ+LLFSATMPK ++
Sbjct: 173 KEVPEERQTLLFSATMPKAIL 193
>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
Length = 492
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 118/199 (59%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S +KA+ +GY + T +QE T+ L GKD + +A+TGTGK+ AF LP IE
Sbjct: 3 FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V P I LI+ PTRELA Q E L K + V + GG +
Sbjct: 63 VDVEN--------PAIQTLIISPTRELAIQTEEELFRLGKEKR-VKVQVVYGGADIRRQI 113
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R LE +P QILV TPGRL DH+ +V L G++ LVLDEAD +L++GF +D+E+I+
Sbjct: 114 RSLEKNP-QILVGTPGRLRDHLRRG---TVDLSGVQTLVLDEADEMLNMGFLEDIEDIIK 169
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 170 QTPSERQTLLFSATMPPEI 188
>gi|410471007|ref|YP_006894288.1| ATP-dependent RNA helicase [Bordetella parapertussis Bpp5]
gi|408441117|emb|CCJ47537.1| putative ATP-dependent RNA helicase [Bordetella parapertussis Bpp5]
Length = 542
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL+ AG+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 15 FEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNR 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + +N G+ T+VGG +
Sbjct: 75 IAHQPGNKGVG----VQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQL 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 131 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 186
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 187 RLPKERQTLLFSATL 201
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 121/198 (61%), Gaps = 13/198 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G+ P +KA+T G+ + T +QE T+ ++G D + +A+TGTGK+ AF +P I
Sbjct: 2 KNFTDFGLEPKVLKAITEMGFEEATPIQEKTIPLAMQGLDLIGQAQTGTGKTAAFSIPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ TS S I L++CPTRELA Q+ AE I L GI L + GG
Sbjct: 62 HKI--ETSQSK------IVALVMCPTRELAIQV-AEEIEKLGRFKGIRSLPIYGGQDIVK 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K ++RL ++ +VLDEAD +LD+GF +D++ I
Sbjct: 113 QIRALKKRP-QIIIGTPGRLLDHINRK---TIRLEDVETVVLDEADEMLDMGFMEDIQAI 168
Query: 559 VDCLPRRRQSLLFSATMP 576
+ +P R ++LFSATMP
Sbjct: 169 LSQVPEERHTMLFSATMP 186
>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
ATCC 14931]
gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
ATCC 14931]
Length = 495
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 118/199 (59%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S +KA+ +GY + T +QE T+ L GKD + +A+TGTGK+ AF LP IE
Sbjct: 6 FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V P I LI+ PTRELA Q E L K + V + GG +
Sbjct: 66 VDVEN--------PAIQALIISPTRELAIQTEEELFRLGKEKR-VKVQVVYGGADIRRQI 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R LE +P QILV TPGRL DH+ + V L G++ LVLDEAD +L++GF +D+E+I+
Sbjct: 117 RSLEKNP-QILVGTPGRLRDHLRRGT---VDLSGVQTLVLDEADEMLNMGFLEDIEDIIK 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 173 QTPSERQTLLFSATMPPEI 191
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++ALT +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 17 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+ + +A + + + GG
Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKYTALRSAVVFGGVDMNPQT 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 136 EQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 192 LLPAHRQTLLFSATFSPEI 210
>gi|377820473|ref|YP_004976844.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935308|gb|AET88867.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
YI23]
Length = 546
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 122/211 (57%), Gaps = 20/211 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S + ALTAAGY T VQE + A L G+D +V + TG+GK+ AF+LPAIE
Sbjct: 39 FESLGLSAEIVSALTAAGYQNPTPVQERAIPAALAGRDLLVSSPTGSGKTAAFMLPAIEK 98
Query: 441 VLK----------------ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG 484
+ A S Q + +L+L PTRELA Q++ A K+
Sbjct: 99 FAQMQKQEAQQPRAPRDPNAKSGRRPQPIARPKLLVLTPTRELAMQVSTAATTYGKHLRR 158
Query: 485 IGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544
+ ++++GG + L +P +ILVATPGRL+DH+E + L L MLVLDEAD
Sbjct: 159 LRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLIDHLERG---RIDLSELNMLVLDEAD 214
Query: 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
+LD+GF +D+E IVD P RQ+LLFSAT+
Sbjct: 215 RMLDMGFIEDIETIVDATPASRQTLLFSATI 245
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++ALT +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 17 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+ + +A + + + GG
Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKYTALRSAVVFGGVDMNPQT 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 136 EQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 192 LLPAHRQTLLFSATFSPEI 210
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 122/200 (61%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF++ G+SP +KAL GY+ T +Q + L+G+D + A+TGTGK+ F LP I+
Sbjct: 17 RFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQ 76
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L+ S S + P+ LIL PTRELA Q+ A+ +A + + GG
Sbjct: 77 RLLQHASHSASPARHPVRALILTPTRELADQV-ADNVAAYCRFTPLRSTVVFGGVDMAPQ 135
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L + +I++ATPGRLLDH++ K +V L ++LV+DEAD +LD+GF D++ I+
Sbjct: 136 TAILRAG-VEIVIATPGRLLDHVQQK---TVNLSQTQILVMDEADRMLDMGFLPDLQRII 191
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT E+
Sbjct: 192 NLLPKQRQNLLFSATFSPEI 211
>gi|354581663|ref|ZP_09000566.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353200280|gb|EHB65740.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 524
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 129/225 (57%), Gaps = 16/225 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI ++ L G T VQ+ T+ LEGKD + +A+TGTGK++AF+LP ++
Sbjct: 4 FQQLGIDEQRVRKLKEQGIAVPTPVQQETIPLLLEGKDVIARARTGTGKTLAFMLPILQH 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVD 499
+ P LI+ PTRELA QI EA L DGI +L + GG +
Sbjct: 64 IDPNR--------PFPQALIIAPTRELALQITEEARKLTAGEPDGIKILAVYGGQDVEKQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+LE +++ TPGRLLDH+ + + L G+KMLVLDEAD +L +GF +VE ++
Sbjct: 116 LRKLEGG-RHLIIGTPGRLLDHLRRGT---LELGGVKMLVLDEADQMLHMGFLAEVEALI 171
Query: 560 DCLPRRRQSLLFSATMP---KELVLKREHTYIDTVGLGSVETPVK 601
D LP RRQ++LFSATMP K+L + + D V G+ P++
Sbjct: 172 DALPYRRQTMLFSATMPAGVKQLAARYMNKPEDIVIKGASPIPLE 216
>gi|334132360|ref|ZP_08506117.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333442326|gb|EGK70296.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 468
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 115/198 (58%), Gaps = 16/198 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD +SP T+ L G+ MT VQ A L L G+D + +AKTG+GK+ AF LP +
Sbjct: 13 FDSLPLSPATLANLKTLGFDAMTPVQAAALPVALAGRDLIAQAKTGSGKTAAFALPLL-- 70
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF--KV 498
+ T+ P L+LCPTRELA Q+A E L + D I VLTL GGT+ +V
Sbjct: 71 -----AKLNTRWFSP-QALVLCPTRELADQVAKEVRRLARGTDNIKVLTLCGGTKIGPQV 124
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
D S ++V TPGRLLDH+E S+ L G+ LVLDEAD +LD+GF D+ +
Sbjct: 125 DSL---SHGAHVIVGTPGRLLDHLERG---SLDLRGINTLVLDEADRMLDMGFVDDIAAV 178
Query: 559 VDCLPRRRQSLLFSATMP 576
PR RQ+LLFSAT P
Sbjct: 179 ARQCPRERQTLLFSATFP 196
>gi|456988392|gb|EMG23465.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 367
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 127/201 (63%), Gaps = 11/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E I P + A+ GY ++T +QE ++ LEGKD A+TGTGK++AFL+P I
Sbjct: 2 KFEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L T+ + I L+L PTREL QIA EA LLK+ +GI + ++GGT +K
Sbjct: 62 NIL-------TKGIQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ LE I+VATPGRL+D I KSG S+ + ++ VLDEAD +LD+GF +D+ ++
Sbjct: 115 NKDLEG-LNGIIVATPGRLIDMI--KSG-SIDISNVEFFVLDEADRMLDMGFIQDIRWLL 170
Query: 560 DCLPRRRQSLLFSATMPKELV 580
R+Q+LL+SAT+ E++
Sbjct: 171 HKCKNRKQTLLYSATLSVEVM 191
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++ALT +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 17 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+ + +A + + + GG
Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKYTALRSAVVFGGVDMNPQT 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 136 EQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 192 LLPAHRQTLLFSATFSPEI 210
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++ALT +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 17 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+ + +A + + + GG
Sbjct: 77 LLPEANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKYTALRSAVVFGGVDMNPQT 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 136 EQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 192 LLPAHRQTLLFSATFSPEI 210
>gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
Length = 457
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 114/185 (61%), Gaps = 18/185 (9%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTTQLVP 454
GY+ MT++Q A L L GKD +AKTG+GK+ AF LL I+A L T S
Sbjct: 22 GYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAKLFKTQS------- 74
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
L+LCPTRELA Q+A E L + I +LTL GG F V QR + I+VAT
Sbjct: 75 ----LVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSV-QRDSLAHAAHIIVAT 129
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574
PGRLLDH+ ++ V+L L+ LVLDEAD +LD+GF D+E I+D P RQ+LLFSAT
Sbjct: 130 PGRLLDHLNRET---VQLDALQTLVLDEADRMLDMGFMPDIETIIDYAPINRQTLLFSAT 186
Query: 575 MPKEL 579
P+E+
Sbjct: 187 WPEEI 191
>gi|406937818|gb|EKD71181.1| hypothetical protein ACD_46C00260G0006 [uncultured bacterium]
Length = 543
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 122/199 (61%), Gaps = 11/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + ++ KAL A GY + T VQ ++ A L G D V A+TGTGK+ AF+LPA++
Sbjct: 3 FAQLNLNDHLHKALKACGYTEPTSVQAKSIPAILAGNDLVACAQTGTGKTAAFVLPALQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S TT+ +LIL PTRELA+QI +A +L +++LVGG +
Sbjct: 63 LSMQKPSKTTR------ILILTPTRELAAQI-TKAASLYGKFLKFNIVSLVGGMPYHHQI 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L + I+VATPGRLLDHIE+K V L ++MLVLDEAD +LD+GF DV I
Sbjct: 116 KDL-ARGADIIVATPGRLLDHIESK---RVDLSHVEMLVLDEADRMLDMGFIDDVTTIAK 171
Query: 561 CLPRRRQSLLFSATMPKEL 579
P +RQ+LLFSAT+ K+L
Sbjct: 172 LTPEQRQTLLFSATIDKQL 190
>gi|298709151|emb|CBJ31095.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 659
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 131/227 (57%), Gaps = 18/227 (7%)
Query: 376 LSQKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
++ +F++ +S T A++ GY MT+VQE ++ CL G D + KAKTGTGK++AFL
Sbjct: 104 ITTGQFNDLDLSKNTHAAISDVLGYANMTKVQEQSIPVCLTGVDVLAKAKTGTGKTVAFL 163
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+PAIE K + LI+ PTRELA QIA EA ++ H + ++ VGG
Sbjct: 164 IPAIERAAKRGFGKG------VSALIISPTRELAQQIAVEAQQIMSFHR-LKLMCSVGGV 216
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
D +L S I+VATPGRLLD +EN GL + L LV DEAD LL++GFR
Sbjct: 217 NVNRDLNQLNSGAPDIMVATPGRLLDLMENH-GLGRDMRDLDTLVFDEADQLLEMGFRPA 275
Query: 555 VENIVDCLPRR---RQSLLFSATMPKE------LVLKREHTYIDTVG 592
+ENI+ L RQ+L+FSATMP + + +K + +D VG
Sbjct: 276 IENILRNLQASKTYRQTLMFSATMPGDVQAIASIAMKPSYEVVDCVG 322
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 123/199 (61%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S IK++ G+ + T +QE T+ LEGKD + +A+TGTGK+ AF +P I+
Sbjct: 4 FKELGLSEPLIKSVLNMGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGIPLIQK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + I ++L PTRELA Q+A E + + GI L + GG
Sbjct: 64 IAETSED--------IQGIVLTPTRELAVQVAEE-LNKIGQFKGIRTLPIYGGQEIDRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+VATPGRL+DH+ ++ +RL + M++LDEAD +L++GF +D+E I+
Sbjct: 115 RALKKRP-HIIVATPGRLMDHMRRRT---IRLQNINMVILDEADEMLNMGFVEDIETILQ 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+++
Sbjct: 171 EIPEARQTLLFSATMPRQI 189
>gi|354580517|ref|ZP_08999422.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353202948|gb|EHB68397.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 529
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G+ P ++A+T G+ + T +Q ++ L GKD + +A+TGTGK+ AF LP I
Sbjct: 2 KNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ K I L++ PTRELA Q+A E I L GI L + GG
Sbjct: 62 HKIAKEEER--------IVALVMTPTRELAIQVAEE-IGKLSRFKGIRSLAIYGGQDIGR 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ +RL ++ +VLDEAD +LD+GF D+++I
Sbjct: 113 QIRALKKKP-QIIIGTPGRLLDHINRKT---IRLDDVQTVVLDEADEMLDMGFMDDIQSI 168
Query: 559 VDCLPRRRQSLLFSATMP 576
+ +P RQ+LLFSATMP
Sbjct: 169 LKLVPENRQTLLFSATMP 186
>gi|429462585|ref|YP_007184048.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338099|gb|AFZ82522.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 435
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 16/236 (6%)
Query: 367 KEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTG 426
KEKRE + Q FD G+ L + ++ + GY T +QE + L G+D + A+TG
Sbjct: 2 KEKRENKN--KQILFDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTG 59
Query: 427 TGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIG 486
TGK+ AF+LP I +L +SST+ + VLIL PTRELA+Q+ + KN + +
Sbjct: 60 TGKTAAFVLPIINKILPYANSSTSPARHLLRVLILVPTRELANQVYDSVVIYSKNTN-LR 118
Query: 487 VLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
+ L GG + L+ C+ILVATPGRL+ HIE ++ L +++ VLDEAD +
Sbjct: 119 SVVLFGGADHYNQENNLKLG-CEILVATPGRLIAHIEQG---NLHLQNIEIFVLDEADRM 174
Query: 547 LDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKV 602
LD+GF D++ I+ LP+ RQ+L FSAT K ++ +G+ ++ PV++
Sbjct: 175 LDMGFMPDIDKIISKLPKNRQTLFFSATFSK---------FMRKIGMSYLKDPVEL 221
>gi|407797235|ref|ZP_11144181.1| DEAD/DEAH box helicase [Salimicrobium sp. MJ3]
gi|407018429|gb|EKE31155.1| DEAD/DEAH box helicase [Salimicrobium sp. MJ3]
Length = 491
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 126/200 (63%), Gaps = 14/200 (7%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+ G+S +KAL G+ + T +QE T+ +EG D + +A+TGTGK+ AF +P IE
Sbjct: 3 KFNSLGLSDPILKALDHMGFEETTPIQEQTIPLGMEGHDVIGQAQTGTGKTAAFGIPMIE 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V K V + L++ PTRELA Q+A E L KN G+ L + GG+ +
Sbjct: 63 KVDKQ--------VRGVQGLVIAPTRELAIQVAEELNRLGKNA-GVRSLPVYGGSNMERQ 113
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+++ +I+VATPGRLLDHI K+ ++L + VLDEAD +L++GF +D+ +I+
Sbjct: 114 IRALKNN--EIVVATPGRLLDHIRRKT---IKLEQVHTSVLDEADEMLNMGFIEDIRDIL 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSATMPKE+
Sbjct: 169 KALPTERQTLLFSATMPKEI 188
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 125/203 (61%), Gaps = 5/203 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
S K+F++ G+SP +KAL GY+ T +Q + LEGKD + A+TGTGK+ + LP
Sbjct: 13 SDKKFEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLP 72
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
++++L + ++S + P+ LIL PTRELA Q+ E + + + + GG
Sbjct: 73 MLQSLLFSANTSMSPARHPVRALILVPTRELADQV-FEDVKRYAKYTPVKSAVVFGGVDI 131
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
L + +IL+ATPGRLLDH++ K +V L ++LVLDEAD +LD+GF D++
Sbjct: 132 SSQTSILRAG-VEILIATPGRLLDHVQQK---NVNLSHTQILVLDEADRMLDMGFLPDLQ 187
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
IV+ LP++RQ+LLFSAT ++
Sbjct: 188 RIVNLLPKQRQNLLFSATFSNDI 210
>gi|327294243|ref|XP_003231817.1| hypothetical protein TERG_07436 [Trichophyton rubrum CBS 118892]
gi|326465762|gb|EGD91215.1| hypothetical protein TERG_07436 [Trichophyton rubrum CBS 118892]
Length = 643
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 164/327 (50%), Gaps = 27/327 (8%)
Query: 315 KMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEP 374
++ +++L KY ++ R+P L + + N ++ E E
Sbjct: 19 RLPVTSTLAKYSIR---RLPTAPLLTSRALHASPQF---RVPAGTANAGVAVEDAGEAEL 72
Query: 375 ILSQKRFDECGI-SPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
I E G+ I A+T G MT VQ T++ ++G D + +AKTGTGK++A
Sbjct: 73 ITEFSELGEKGVVDQRLINAITKGMGLKTMTDVQAQTINESIQGIDMIAQAKTGTGKTVA 132
Query: 433 FLLPAIEAVLKATSSSTTQL----VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
FLLP I +L+ + + I +++ PTRELA QIA EA + + G+ V
Sbjct: 133 FLLPVIHRILQDPTLGNLRRNFASAQDIRAVVISPTRELAEQIAVEAQKITRG-SGLKVQ 191
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
T VGGTR + RL+ + C ILV TPGRL+D + + V L+ VLDEAD LLD
Sbjct: 192 TAVGGTRKREGLMRLQREGCHILVGTPGRLMDLFSDPTS-GVAAPKLQAFVLDEADRLLD 250
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------VLKREHTYIDTVGLGSVET 598
+GF D+E I P R RQ+L+FSAT+PK + +LK + T+++TVG ET
Sbjct: 251 IGFAPDIERIQSFFPSRSQVDRQTLMFSATIPKSVKGLARSMLKPDFTFVNTVG---DET 307
Query: 599 PVKVSKYNIYVFVLVLSIKIQAFYIIC 625
P + VF+ ++ A + I
Sbjct: 308 PTHLRVPQRAVFLRGFENQLPALFEIA 334
>gi|33594923|ref|NP_882566.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 582
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL+ AG+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 39 FEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNR 98
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + +N G+ T+VGG +
Sbjct: 99 IAHQPGNKGVG----VQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQL 154
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 155 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 210
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 211 RLPKERQTLLFSATL 225
>gi|392967949|ref|ZP_10333365.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
gi|387842311|emb|CCH55419.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
Length = 663
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 128/204 (62%), Gaps = 12/204 (5%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+QK F + IS ++A+T G++ + +Q + L G+D + +A+TGTGK+ AF +P
Sbjct: 48 NQKTFADLDISDDLLQAVTDMGFVSPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIP 107
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
A+E + + S + VL+LCPTRELA Q+A E L K G+ V + GG
Sbjct: 108 ALEMIDTSVRS--------VQVLVLCPTRELALQVADEIRKLAKYKRGLRVEAIYGGDSI 159
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ R L+ I++ TPGR++DH+E + ++L ++M++LDEAD +LD+GFR+D+E
Sbjct: 160 ERQIRSLKGG-VHIVIGTPGRVMDHMERNT---LKLDNVRMMILDEADEMLDMGFREDIE 215
Query: 557 NIVDCLPRRRQSLLFSATMPKELV 580
+I++ +P RQ++LFSATM K ++
Sbjct: 216 SILEDMPEERQTILFSATMSKPIM 239
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 121/203 (59%), Gaps = 5/203 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+++ F+ G+ P ++ALT GY + T +Q + L GKD + A+TGTGK+ F LP
Sbjct: 71 AEQTFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 130
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L ++S + P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 131 IIQRLLPLANASASPARHPVRALMLTPTRELADQV-YDNVARYAKHTDLRSTVVFGGVDM 189
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++
Sbjct: 190 NPQTDALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQ 245
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
I++ LP +RQ+LLFSAT E+
Sbjct: 246 RIINLLPAQRQTLLFSATFSPEI 268
>gi|435851354|ref|YP_007312940.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433661984|gb|AGB49410.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 374
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 127/200 (63%), Gaps = 13/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ +S KA+ G++ T +Q + LEGKD + +A+TGTGK+ AF +PA+E
Sbjct: 6 FNDLNLSSDIKKAIEHMGFLHPTPIQIQAIPHILEGKDIIGQAETGTGKTAAFGIPALEM 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V TQ + VL+LCPTRELA+Q+A E I LL + I V ++ GG +
Sbjct: 66 V------DITQ--KRVQVLVLCPTRELANQVAEE-INLLSRYKDIKVQSIYGGQSIERQI 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ +++ TPGR++DH++ + ++L LKMLVLDEAD +LD+GFR+D+E I+
Sbjct: 117 RTLKKG-VHMVIGTPGRVMDHLQRNT---LKLDNLKMLVLDEADKMLDMGFREDIEVILT 172
Query: 561 CLPRRRQSLLFSATMPKELV 580
P RRQ++LFSATMPK ++
Sbjct: 173 RAPERRQTILFSATMPKPIM 192
>gi|338733518|ref|YP_004671991.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
gi|336482901|emb|CCB89500.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
Length = 432
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ + P +KA+ AGY + T +Q+ + ++G D A+TGTGK+ AFLLPA+
Sbjct: 13 FNNLCLHPKILKAIQLAGYPKPTEIQQKAIPKIVQGFDIRASAQTGTGKTAAFLLPALHR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ S +T + P VLIL PTRELA QI ++A K+ I + +VGG +
Sbjct: 73 LI---SPATKSGIGP-RVLILAPTRELAQQIESQANKYSKSLQRIKTVCVVGGMPYPAQM 128
Query: 501 RRLESDPCQILVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L S P +IL+ATPGRL+D +E NK S L+ML+LDEAD +LD+GF K VE IV
Sbjct: 129 RQL-SRPHEILIATPGRLIDFMERNKIDFS----RLEMLILDEADRMLDMGFSKPVEQIV 183
Query: 560 DCLPRRRQSLLFSATMPKELV 580
P RQ+LLFSAT+ E++
Sbjct: 184 QATPSTRQTLLFSATLQGEVI 204
>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
H10]
Length = 565
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 124/200 (62%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S +A+ G+ + T +Q ++ LEG D + +A+TGTGK+ AF +PA+E
Sbjct: 6 FKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEK 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S I VL+L PTRELA Q E +LK DGI +L + GG
Sbjct: 66 IDPQIDS--------IQVLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQI 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ P QI++ TPGR++DH+ ++ ++L LKM+VLDEAD +L++GFR+D++ I++
Sbjct: 118 MALKKRP-QIIIGTPGRVMDHMRRRT---IKLESLKMIVLDEADEMLNMGFREDIDTILE 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ++LFSATMPKE++
Sbjct: 174 KVPEDRQTILFSATMPKEIL 193
>gi|357024408|ref|ZP_09086560.1| ATP-dependent RNA helicase [Mesorhizobium amorphae CCNWGS0123]
gi|355543640|gb|EHH12764.1| ATP-dependent RNA helicase [Mesorhizobium amorphae CCNWGS0123]
Length = 514
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+T AGY Q T +Q + L GKD + A+TGTGK+ +F+LP +
Sbjct: 3 FSDLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLTR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ I KNH + + L+GG F
Sbjct: 63 LEKGRARARMP-----RTLILEPTRELAAQVEENFIRYGKNHK-LNIALLIGGVSFDEQD 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I +
Sbjct: 117 KKLERG-ADVLIATPGRLLDHRERGKLL---LNGVEILVIDEADRMLDMGFIPDIERICE 172
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 173 MIPFTRQTLFFSATMPPEIT 192
>gi|339625011|ref|ZP_08660800.1| putative ATP-dependent RNA helicase [Fructobacillus fructosus KCTC
3544]
Length = 534
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 123/197 (62%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E G+S ++++ A GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 16 KFEELGLSKAILQSIAAHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILE 75
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ P I +I+ PTRELA Q AE + L + + V + GG+ +
Sbjct: 76 HIDLDN--------PNIQAVIISPTRELAIQ-TAEELKKLGSDKHVNVQVVFGGSDIRRQ 126
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K+ +L ++ LVLDEAD +L++GF D+E I+
Sbjct: 127 IQGLKSHP-QILVGTPGRLLDHINRKTA---KLGHVQTLVLDEADEMLNMGFLDDIEAII 182
Query: 560 DCLPRRRQSLLFSATMP 576
+P+ RQ+LLFSATMP
Sbjct: 183 AQVPKERQTLLFSATMP 199
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 124/200 (62%), Gaps = 5/200 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + G++P +AL+ GY+ T +Q + L+G+D + A+TGTGK+ +F LP ++
Sbjct: 41 RFADFGLAPEIQRALSDQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTASFSLPILQ 100
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++ ++S + P+ L+L PTRELA Q+ A+ + H + + GG K
Sbjct: 101 LLMPHANASMSPARHPVRALVLVPTRELAVQV-ADNVKAYARHTPLRATVVFGGMDMK-P 158
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q + +I++ATPGRLLDHIE K +V L ++MLV+DEAD +LD+GF D++ I+
Sbjct: 159 QTEILRRGVEIVIATPGRLLDHIEQK---NVSLGQVQMLVMDEADRMLDMGFLPDLQRII 215
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+L+FSAT E+
Sbjct: 216 NLLPKQRQNLMFSATFSPEI 235
>gi|339482174|ref|YP_004693960.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804319|gb|AEJ00561.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 460
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 119/195 (61%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ ++P IKA+ AGY T +Q+ + L G D + A+TGTGK+ AF+LPA+
Sbjct: 3 FEDLNLNPSIIKAIQDAGYTTPTPIQKQAIPELLSGHDIMASAQTGTGKTAAFMLPALH- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L AT + T P VL+L PTRELA Q++ A+ K V++++GG + + Q
Sbjct: 62 -LLATPAKTPGRGP--RVLVLTPTRELALQVSEAALKYGKYLPRTKVVSILGGMPYPL-Q 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L S P ILVATPGRL+DHI+ + L+MLVLDEAD +LD+GF DVE I
Sbjct: 118 NKLLSQPVDILVATPGRLIDHIQRG---RIDFKRLEMLVLDEADRMLDMGFIDDVETIAA 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ+LLFSAT+
Sbjct: 175 ATPATRQTLLFSATL 189
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++ALT +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 88 FDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQN 147
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+ + +A + + + GG
Sbjct: 148 LLPEANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKYTALRSAVVFGGVDMNPQT 206
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 207 EQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 262
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 263 LLPAHRQTLLFSATFSPEI 281
>gi|423334318|ref|ZP_17312098.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
53608]
gi|337728126|emb|CCC03217.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 497
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +GY + T +QE T+ LEGKD + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I +I+ PTRELA Q E L K+ + V + GG +
Sbjct: 62 NVDTEN--------PNIQAIIISPTRELAIQTQEELYRLGKD-KHVRVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ P QILV TPGRL DHI +V+L +K LVLDEAD +L++GF +D+E+I+
Sbjct: 113 IKSLKQHP-QILVGTPGRLRDHINRH---TVKLDHIKTLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 169 KETPDDRQTLLFSATMPPEI 188
>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 467
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 121/207 (58%), Gaps = 12/207 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
PI + F + + P + LT GY++MT +Q A+L L G D + +AKTG+GK+ AF
Sbjct: 4 PITAGAPFSQLPLPPAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAF 63
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L A+ A L A + + + ++LCPTRELA Q+ E L + + I VLTL GG
Sbjct: 64 SL-ALLARLDARNFA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGG 115
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + LE I+V TPGR++DH+E S + L L LVLDEAD +LD+GF
Sbjct: 116 TPMRPQTASLEHG-AHIVVGTPGRIMDHLERGS---LPLQSLNTLVLDEADRMLDMGFFD 171
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELV 580
D+ +V P+ RQ+LLFSAT P+ +V
Sbjct: 172 DIATVVKQCPKERQTLLFSATYPEGIV 198
>gi|383320415|ref|YP_005381256.1| Superfamily II DNA and RNA helicase [Methanocella conradii HZ254]
gi|379321785|gb|AFD00738.1| Superfamily II DNA and RNA helicase [Methanocella conradii HZ254]
Length = 456
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 126/197 (63%), Gaps = 15/197 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S T+KA+ A G+ + T +Q + A L+G+D + +A+TGTGK+ AF +P +EA
Sbjct: 4 FQELSLSAPTLKAIAAMGFEEATPIQGQAIPAALQGRDVIGQAQTGTGKTAAFGIPMVEA 63
Query: 441 V-LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V +K+ + I +++ PTRELA Q+A E + + + G+ L + GG K
Sbjct: 64 VDIKSEA---------IQGIVITPTRELAVQVAEE-LNRIGHFKGVHALPIYGGQDIKRQ 113
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+ P Q++V TPGRL+DH++ K+ VRL G++M+VLDEAD +LD+GF +D+E I+
Sbjct: 114 VSALKRKP-QVIVGTPGRLIDHMKRKT---VRLGGIRMVVLDEADEMLDMGFIEDIERIL 169
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSAT+P
Sbjct: 170 KATPEGRQTLLFSATIP 186
>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
gi|339491490|ref|YP_004705995.1| ATP-dependent RNA helicase [Leuconostoc sp. C2]
gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
gi|338853162|gb|AEJ31372.1| ATP-dependent RNA helicase [Leuconostoc sp. C2]
Length = 532
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 122/197 (61%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+T GY++ T +QE T+ L G+D + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I LI+ PTRELA Q A E L ++ + V + GG+ +
Sbjct: 62 HIDLNNKN--------IQALIVSPTRELAIQTADELKKLGRDKH-VDVQVVFGGSDIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF +D+E+I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHINRK---TVKIDNVKTLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSATMP
Sbjct: 169 KNTPADRQTLLFSATMP 185
>gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 594
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ ++ F E G+SP ++A+ G+ + +Q A + L G+D V + TG+GK++AF +
Sbjct: 1 MEKRPFAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAI 60
Query: 436 PAIEAV---LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
PA+E V L+A + VL+LCPTRELA Q+A E L + GI + + G
Sbjct: 61 PALERVDPKLRA-----------VQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYG 109
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G ++ R L + Q+++ TPGR++DH+E + ++L LK++VLDEAD +LD+GFR
Sbjct: 110 GQSYERQYRALAAG-SQVVIGTPGRVMDHMERGT---LKLGALKLVVLDEADRMLDMGFR 165
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKEL 579
+D+E I+ +P RQ L FSATMP+ +
Sbjct: 166 EDIEKILSAVPVPRQLLFFSATMPRPI 192
>gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN]
gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 467
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 121/207 (58%), Gaps = 12/207 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P + F + + P T+ LT GY++MT +Q A+L L G D + +AKTG+GK+ AF
Sbjct: 4 PTTAGAPFSQLPLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAF 63
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L A+ A L A + + + ++LCPTRELA Q+ E L + + I VLTL GG
Sbjct: 64 SL-ALLARLDARNFA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGG 115
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + LE I+V TPGR++DH+E S + L L LVLDEAD +LD+GF
Sbjct: 116 TPMRPQTASLEHG-AHIVVGTPGRIMDHLERGS---LPLQSLNTLVLDEADRMLDMGFFD 171
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELV 580
D+ +V P+ RQ+LLFSAT P+ +V
Sbjct: 172 DIATVVKQCPKERQTLLFSATYPEGIV 198
>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
Length = 497
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 120/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +GY + T +QE T+ LEGKD + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I +I+ PTRELA Q E L K+ + V + GG +
Sbjct: 62 NVDTEN--------PNIQAIIISPTRELAIQTQEELYRLGKD-KHVRVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ P QILV TPGRL DHI +V+L +K LVLDEAD +L++GF +D+E+I+
Sbjct: 113 IKSLKQHP-QILVGTPGRLRDHINRH---TVKLDHIKTLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 169 KETPDDRQTLLFSATMPPEI 188
>gi|390939956|ref|YP_006403693.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390193063|gb|AFL68118.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 463
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ P ++ L GY +MT +QEA+L LEG+D V +AKTG+GK+ AF LP + +
Sbjct: 9 FNHLIHHPSMLETLERLGYQRMTPIQEASLPLALEGRDVVAQAKTGSGKTAAFGLPLLLS 68
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ +S Q V +LCPTRELA Q++ E L + I ++TL GGTRF
Sbjct: 69 L--HVNSMRIQSV------VLCPTRELAEQVSNELRRLAQFTHNIKIVTLCGGTRFVPQC 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
LE I+V TPGR+L H++ K+ + +K LVLDEAD +LD+GF +D+E I+
Sbjct: 121 INLEHG-AHIVVGTPGRILQHLQEKT---IDFSHIKTLVLDEADRMLDMGFYEDIEKIIA 176
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P +RQ+LLFSAT PKE+
Sbjct: 177 KMPSKRQTLLFSATFPKEI 195
>gi|385811915|ref|YP_005848306.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
gi|299782814|gb|ADJ40812.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
Length = 271
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 118/199 (59%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S +KA+ +GY + T +QE T+ L GKD + +A+TGTGK+ AF LP IE
Sbjct: 3 FSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEH 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V P I LI+ PTRELA Q E L K + V + GG +
Sbjct: 63 VDVEN--------PAIQTLIISPTRELAIQTEEELFRLGKEKR-VKVQVVYGGADIRRQI 113
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R LE +P QILV TPGRL DH+ +V L G++ LVLDEAD +L++GF +D+E+I+
Sbjct: 114 RSLEKNP-QILVGTPGRLRDHLRRG---TVDLSGVQTLVLDEADEMLNMGFLEDIEDIIK 169
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 170 QTPSERQTLLFSATMPPEI 188
>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 540
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 118/205 (57%), Gaps = 10/205 (4%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ K F + G+SP A+ AAGY+ T +Q A + L G+D + A+TGTGK+ +F+L
Sbjct: 1 MDSKTFADLGLSPKVQAAVMAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P I + + + LIL PTRELA+Q+A NH + V L+GG
Sbjct: 61 PMITRLETGRARARMP-----RSLILAPTRELAAQVAQSFEKYGTNHK-LSVALLIGGVS 114
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++L+ +L+ATPGRLLDH V LMG+++LV+DEAD +LD+GF D+
Sbjct: 115 MDDQVKKLDRG-VDVLIATPGRLLDHFGRGR---VMLMGVEILVIDEADRMLDMGFIPDI 170
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I LP RRQ+L FSATMP E+
Sbjct: 171 EKICKLLPPRRQTLFFSATMPPEIT 195
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 363 NGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVK 422
N + E P FD G+ P ++ALT +GY + T +Q A + G D +
Sbjct: 2 NTATMSEASEAPANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGA 61
Query: 423 AKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A+TGTGK+ F LP I +L ++S + P+ LIL PTRELA Q+ + +A +
Sbjct: 62 AQTGTGKTAGFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKY 120
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ + GG +L +ILVATPGRLLDH++ + SV L ++MLVLDE
Sbjct: 121 TALRSAVVFGGVDMNPQTEQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDE 176
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
AD +LD+GF D++ I++ LP RQ+LLFSAT E+
Sbjct: 177 ADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSPEI 213
>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 619
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 122/201 (60%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E IS +KA+ G+ + T +Q A + + G+D + +A+TGTGK+ AF +PAIE
Sbjct: 69 KFSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGIPAIE 128
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V TQ VLILCPTRELA Q+ + L K G+ V + GG ++
Sbjct: 129 HV--NAEDRNTQ------VLILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYERQ 180
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+ QI+V TPGR++DHIE K+ ++L + M++LDEAD +L++GFR+D+E I+
Sbjct: 181 FANLKRG-TQIVVGTPGRIMDHIEKKT---LKLDNISMVILDEADEMLNMGFREDIEQIL 236
Query: 560 DCLPRRRQSLLFSATMPKELV 580
RQ++LFSATM KE++
Sbjct: 237 SFAKEDRQTVLFSATMSKEIL 257
>gi|389645769|ref|XP_003720516.1| hypothetical protein MGG_10312 [Magnaporthe oryzae 70-15]
gi|351637908|gb|EHA45773.1| hypothetical protein MGG_10312 [Magnaporthe oryzae 70-15]
Length = 580
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 133/222 (59%), Gaps = 17/222 (7%)
Query: 399 YIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
+ +M+ VQ AT+ + + D + +AKTGTGK+IAFLLPA++ +L+ SS +
Sbjct: 97 FDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAFLLPALQTLLRRPSSRGND----VS 152
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
VL++ PTRELA QIA EA ALL+ V T +GGT +QRR+ CQIL+ TPGR
Sbjct: 153 VLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTNKDAEQRRILRG-CQILIGTPGR 211
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSA 573
L+DH+E +S ++ L + VLDEAD LLD+GF ++ IV LP R RQ +LFSA
Sbjct: 212 LMDHLEEQS-VAEMLQSVDTFVLDEADRLLDMGFMPQLKKIVAALPNRQKVPRQGMLFSA 270
Query: 574 TMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
T+ + + L ++ +I T+ G T +V ++ I V
Sbjct: 271 TVAEHVAKVSSIALAPDYKFISTIPKGESNTHERVPQHLIEV 312
>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 536
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F + G+ P ++A+T G+ + T +Q ++ L G+D + +A+TGTGK+ AF LP I
Sbjct: 2 KNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ K I LI+ PTRELA Q+A E I L GI L + GG
Sbjct: 62 HKIAKEEER--------IVSLIMTPTRELAIQVAEE-IGKLSRFKGIRSLAIYGGQDIGR 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ +RL ++ +VLDEAD +LD+GF +D+++I
Sbjct: 113 QIRALKKKP-QIIIGTPGRLLDHINRKT---IRLDDVQTVVLDEADEMLDMGFMEDIQSI 168
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ +P RQ+LLFSATMP +
Sbjct: 169 LKLVPEERQTLLFSATMPANI 189
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G++ ++A+ GY + T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 44 FDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQR 103
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 104 LLPLASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTALRSAVVFGGVDMNPQT 162
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K S L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 163 AELRRG-VEILIATPGRLLDHVQQK---STSLAQVQMLVLDEADRMLDMGFLPDLQRILN 218
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP +RQ+LLFSAT E + K TY+
Sbjct: 219 LLPSQRQTLLFSATFSAE-IKKLASTYL 245
>gi|302423074|ref|XP_003009367.1| ATP-dependent RNA helicase mss116 [Verticillium albo-atrum
VaMs.102]
gi|261352513|gb|EEY14941.1| ATP-dependent RNA helicase mss116 [Verticillium albo-atrum
VaMs.102]
Length = 701
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 147/248 (59%), Gaps = 25/248 (10%)
Query: 380 RFDEC---GISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
RFD+ G+ P +K +T GY M+ VQ T++ L+G D V +A+TGTGK++ FL+
Sbjct: 78 RFDDLPSLGVHPNLVKNITHGMGYESMSDVQTQTITPALKGTDLVAQARTGTGKTLGFLI 137
Query: 436 PAIEAVLKATSSSTTQLV------PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
P ++ +L+ S T+ I ++L PTRELA QIA EA L + G+ V
Sbjct: 138 PVLQRMLQEDPSLATRSARYDARSDDIRGIVLSPTRELAEQIAVEAEKLTRG-TGLVVQR 196
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSVRLMGLKMLVLDEADHLLD 548
VGGT+ RR + + C +LVATPGRL D +E+ +SG++ L +VLDEAD +LD
Sbjct: 197 AVGGTQKSEMLRRCKREGCHLLVATPGRLNDLLEDPRSGIAA--PNLAAIVLDEADRMLD 254
Query: 549 LGFRKDVENIVDCLP----RRRQSLLFSATMPKELV-LKREHT------YIDTVGLGSVE 597
+GF+ +++ IVD LP + RQ+LLFSAT+PK++V L RE +I TV G
Sbjct: 255 VGFKTELQEIVDKLPDVRDKPRQTLLFSATIPKDVVQLAREWVRPDNFDFIQTVSQGEAL 314
Query: 598 TPVKVSKY 605
T +V ++
Sbjct: 315 THERVKQH 322
>gi|86197040|gb|EAQ71678.1| hypothetical protein MGCH7_ch7g1085 [Magnaporthe oryzae 70-15]
Length = 568
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 133/222 (59%), Gaps = 17/222 (7%)
Query: 399 YIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
+ +M+ VQ AT+ + + D + +AKTGTGK+IAFLLPA++ +L+ SS +
Sbjct: 97 FDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAFLLPALQTLLRRPSSRGND----VS 152
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
VL++ PTRELA QIA EA ALL+ V T +GGT +QRR+ CQIL+ TPGR
Sbjct: 153 VLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTNKDAEQRRILRG-CQILIGTPGR 211
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSA 573
L+DH+E +S ++ L + VLDEAD LLD+GF ++ IV LP R RQ +LFSA
Sbjct: 212 LMDHLEEQS-VAEMLQSVDTFVLDEADRLLDMGFMPQLKKIVAALPNRQKVPRQGMLFSA 270
Query: 574 TMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
T+ + + L ++ +I T+ G T +V ++ I V
Sbjct: 271 TVAEHVAKVSSIALAPDYKFISTIPKGESNTHERVPQHLIEV 312
>gi|440473582|gb|ELQ42370.1| ATP-dependent RNA helicase MSS116 [Magnaporthe oryzae Y34]
gi|440481429|gb|ELQ62018.1| ATP-dependent RNA helicase MSS116 [Magnaporthe oryzae P131]
Length = 568
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 133/222 (59%), Gaps = 17/222 (7%)
Query: 399 YIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
+ +M+ VQ AT+ + + D + +AKTGTGK+IAFLLPA++ +L+ SS +
Sbjct: 97 FDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAFLLPALQTLLRRPSSRGND----VS 152
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
VL++ PTRELA QIA EA ALL+ V T +GGT +QRR+ CQIL+ TPGR
Sbjct: 153 VLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTNKDAEQRRILRG-CQILIGTPGR 211
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSA 573
L+DH+E +S ++ L + VLDEAD LLD+GF ++ IV LP R RQ +LFSA
Sbjct: 212 LMDHLEEQS-VAEMLQSVDTFVLDEADRLLDMGFMPQLKKIVAALPNRQKVPRQGMLFSA 270
Query: 574 TMPKE------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
T+ + + L ++ +I T+ G T +V ++ I V
Sbjct: 271 TVAEHVAKVSSIALAPDYKFISTIPKGESNTHERVPQHLIEV 312
>gi|402224794|gb|EJU04856.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 583
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 128/205 (62%), Gaps = 28/205 (13%)
Query: 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPP---IYVL 459
T VQE TL LEGKD +AKTGTGK+IAFL+P+I+ + + + VPP I +L
Sbjct: 96 TEVQEKTLKPILEGKDVFGQAKTGTGKTIAFLVPSIDRLAR-------KPVPPPGIISIL 148
Query: 460 ILCPTRELASQIAAEAIALLKNHDGIGVL----TLVGGTRFKVDQRRLESDPCQILVATP 515
+L PTREL QI AEA LL+ G L + +GG KV + L IL+ATP
Sbjct: 149 VLAPTRELCLQIEAEANMLLE-----GSLYRAQSAIGGVNIKVQRNNLLLKRSDILIATP 203
Query: 516 GRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PR-RRQSLLFSA 573
GRL+DHIEN S L+ RL ++ +LDEAD LLD GF+K + I + P+ +RQ+LLFSA
Sbjct: 204 GRLVDHIEN-SNLTPRLRTVQTFILDEADRLLDQGFQKSILQIARAITPKDQRQTLLFSA 262
Query: 574 TMPKEL------VLKREHTYIDTVG 592
T+ K++ VLK++H +I T+G
Sbjct: 263 TVDKQIREISNVVLKQQHEFISTIG 287
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 19 FDQFGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + ++S + P+ L+L PTRELA Q+AA + H + + GG
Sbjct: 79 LLPSANTSASPARHPVRALMLTPTRELADQVAAN-VQTYSKHTPLRSTVVFGGVDMNPQS 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K +V L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 138 DALRRG-VEILIATPGRLLDHVQQK---TVNLGQVQMLVLDEADRMLDMGFLPDLQRILN 193
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 194 LLPKERQTLLFSATFSPE-IKKLASTYL 220
>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
Length = 456
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 123/202 (60%), Gaps = 13/202 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI-- 438
F E G+ PL +KAL A Y T VQ A + L+G+D + A+TGTGK+ AF+LPA+
Sbjct: 3 FSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPALTR 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
A L ++T + VL+L PTRELA Q+ A K + ++ +VGG ++
Sbjct: 63 TAELPLNGAATPR------VLVLAPTRELAKQVTDAARKYAKFMK-LNIVDVVGGMPYR- 114
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+Q RL S P +LVATPGRLLDH+ + + L +++L+LDEAD +LD+GF DVE I
Sbjct: 115 EQLRLLSRPVDVLVATPGRLLDHVARR---RIALDEVEVLILDEADRMLDMGFLDDVETI 171
Query: 559 VDCLPRRRQSLLFSATMPKELV 580
C P RQ+LLF+AT+ + +
Sbjct: 172 AKCCPPTRQTLLFTATLDRRMA 193
>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 431
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 21/222 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+SP ++ LT AG+ + T +Q + L G+D + A+TGTGK+ AF++P +E
Sbjct: 9 FDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPMLER 68
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S T + P LIL PTRELA QI A I L + T+VGG +
Sbjct: 69 L-----SGTPKGQP--RALILAPTRELAIQIQA-TIDTLGRDLQLFATTVVGGADMQAQV 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L P I+VATPGRLLDH+ N + + L+ + +LVLDEAD +LD+GF + + I+D
Sbjct: 121 RGLRQRP-DIIVATPGRLLDHMWNGT---ISLLAMSILVLDEADRMLDMGFAQQINQILD 176
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKV 602
+P RQ+LLFSATMP +L + SV+ PV+V
Sbjct: 177 AMPEERQTLLFSATMPNDLA---------RLAQASVKDPVRV 209
>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
Length = 433
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + + I VL + GG
Sbjct: 62 EKIDPESSD--------VQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDH+ + ++ L + MLVLDEAD +L GF D+E+I
Sbjct: 114 QMRKLKGN-THIVVATPGRLLDHLRRE---TIVLSNVSMLVLDEADQMLHFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ P +Q++LFSATMPK++
Sbjct: 170 LEETPESKQTMLFSATMPKDI 190
>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
Length = 433
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + + I VL + GG
Sbjct: 62 EKIDPESSD--------VQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDH+ + ++ L + MLVLDEAD +L GF D+E+I
Sbjct: 114 QMRKLKGN-THIVVATPGRLLDHLRRE---TIVLSNVSMLVLDEADQMLHFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ P +Q++LFSATMPK++
Sbjct: 170 LEETPESKQTMLFSATMPKDI 190
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/200 (43%), Positives = 119/200 (59%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +GY + T +QE T+ L+G+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I +I+ PTRELA Q E L K+ + V + GG +
Sbjct: 62 HVDTDN--------PNIQAIIISPTRELAIQTQEELFRLGKD-KHVRVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ P QILV TPGRL DH+ + V+L +K LVLDEAD +L++GF D+E I+
Sbjct: 113 IRNLKQHP-QILVGTPGRLRDHLNRHT---VKLDHIKTLVLDEADEMLNMGFLDDIEAII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
D P RQ+LLFSATMP E+
Sbjct: 169 DQTPADRQTLLFSATMPPEI 188
>gi|346970530|gb|EGY13982.1| ATP-dependent RNA helicase [Verticillium dahliae VdLs.17]
Length = 698
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 147/248 (59%), Gaps = 25/248 (10%)
Query: 380 RFDEC---GISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
RFD+ G+ P +K +T GY M+ VQ T++ L+G D V +A+TGTGK++ FL+
Sbjct: 78 RFDDLPSLGVHPNLVKNITHGMGYESMSDVQTQTITPALKGTDLVAQARTGTGKTLGFLI 137
Query: 436 PAIEAVLKATSSSTTQLV------PPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
P ++ +L+ S T+ I ++L PTRELA QIA EA L + G+ V
Sbjct: 138 PVLQRMLQEDPSLATRSARYDARSDDIRGIVLSPTRELAEQIAVEAEKLTRG-TGLVVQR 196
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSVRLMGLKMLVLDEADHLLD 548
VGGT+ RR + + C +LVATPGRL D +E+ +SG++ L +VLDEAD +LD
Sbjct: 197 AVGGTQKSEMLRRCKREGCHLLVATPGRLNDLLEDPRSGIAA--PNLAAIVLDEADRMLD 254
Query: 549 LGFRKDVENIVDCLP----RRRQSLLFSATMPKELV-LKREHT------YIDTVGLGSVE 597
+GF+ +++ IVD LP + RQ+LLFSAT+PK++V L RE +I TV G
Sbjct: 255 VGFKTELQEIVDKLPDVRDKPRQTLLFSATIPKDVVQLAREWVRPDNFDFIQTVSQGEAL 314
Query: 598 TPVKVSKY 605
T +V ++
Sbjct: 315 THERVKQH 322
>gi|171910495|ref|ZP_02925965.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
4136]
Length = 673
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 12/202 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P +K F E G++P +KA+TA G+ Q + +QE + LEG+D V +++TG+GK++AF
Sbjct: 40 PAGDRKLFTELGLAPDILKAMTALGFEQPSPIQEKGIPPALEGRDVVGQSQTGSGKTMAF 99
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
+P ++ + + LI+CPTRELA Q+ E L + G+ L + GG
Sbjct: 100 AIPVVQKIDPRDRG--------VRALIMCPTRELAMQVCEEVAKLTVHKPGLKALPIYGG 151
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+ R L D QI+V TPGR+LD +E G+ +RL L+ LV DEAD +LD+GFR+
Sbjct: 152 ATYDRQIRGLR-DGAQIVVGTPGRILDFLER--GM-LRLDALQTLVFDEADEMLDMGFRE 207
Query: 554 DVENIVDCLPRRRQSLLFSATM 575
D+++++ +P RQ+L FSAT+
Sbjct: 208 DIDSLMALVPENRQTLFFSATL 229
>gi|397779795|ref|YP_006544268.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
gi|396938297|emb|CCJ35552.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
Length = 521
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 124/200 (62%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + IS T++A+ G+ + T +Q +T+ LEG+D +A+TGTGK+ AF +PAIE
Sbjct: 7 FQDFNISQKTLQAIQDMGFEEPTPIQVSTIPVILEGRDVTGQAQTGTGKTAAFGVPAIEQ 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V + TQ VL+L PTRELA Q A E L K+H G+ +L + GG +
Sbjct: 67 V--DVGNRETQ------VLVLSPTRELAIQTAEEFARLAKHHRGLNILPIYGGQPIERQF 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L Q++V TPGR+LDH++ + + +KM+VLDEAD +LD+GFR+D+E I+D
Sbjct: 119 RGLRRG-AQVVVGTPGRVLDHLDRGT---LSFAAVKMVVLDEADQMLDMGFREDIEKILD 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
P RQ++LFSAT+P ++
Sbjct: 175 ETPGDRQTILFSATLPGPIL 194
>gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
Length = 433
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + + I VL + GG
Sbjct: 62 EKIDPESSD--------VQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDH+ + ++ L + MLVLDEAD +L GF D+E+I
Sbjct: 114 QMRKLKGN-THIVVATPGRLLDHLRRE---TIVLSNVSMLVLDEADQMLHFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ P +Q++LFSATMPK++
Sbjct: 170 LEETPESKQTMLFSATMPKDI 190
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 87 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 147 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTSLRSAVVFGGVDMNPQM 205
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K + L +++LVLDEAD +LD+GF D++ I++
Sbjct: 206 AELRRG-VEILIATPGRLLDHVQQK---TANLGQVQILVLDEADRMLDMGFLPDLQRILN 261
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 262 LLPKERQTLLFSATFSPE-IKKLASTYL 288
>gi|408389732|gb|EKJ69163.1| hypothetical protein FPSE_10659 [Fusarium pseudograminearum CS3096]
Length = 574
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 147/251 (58%), Gaps = 23/251 (9%)
Query: 376 LSQKRFDEC----GISPLTIKALTAAGYIQ-MTRVQEATLSACL--EGKDAVVKAKTGTG 428
S +RFD + P+ ++ +T + MT VQ +TL L + D +V+A+TGTG
Sbjct: 70 FSTRRFDSLLENNQVDPIVVRTITNDMKFEFMTPVQASTLDELLPPQRNDCLVQARTGTG 129
Query: 429 KSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
K++AFLLPA++ ++ S + I +L++ PTRELA QIAAEA +LKN V
Sbjct: 130 KTMAFLLPALQTMINQKRGSGSG----ISLLVISPTRELAQQIAAEATRVLKNLPQYRVQ 185
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
++GGT ++R + C+IL+ATPGRLLDH+ ++ + + + LVLDEAD LLD
Sbjct: 186 CVMGGTNKDREERAILGG-CEILIATPGRLLDHMSSED-IRYSMRHVDTLVLDEADRLLD 243
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMP------KELVLKREHTYIDTVGLGSVET 598
+GF KD+ +IV LP + RQ +LFSAT+ ELV ++ +I T+ G V T
Sbjct: 244 MGFLKDLRSIVKQLPDKAKTNRQGMLFSATIAPHVKQVAELVCSPQYKFISTIPEGEVNT 303
Query: 599 PVKVSKYNIYV 609
+V ++ + V
Sbjct: 304 HERVPQFLVQV 314
>gi|359792245|ref|ZP_09295065.1| ATP-dependent RNA helicase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251603|gb|EHK54941.1| ATP-dependent RNA helicase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 525
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+T AGY T +Q + L+GKD + A+TGTGK+ +F+LP +
Sbjct: 14 FADLGLSPKVLSAVTDAGYTVPTPIQLGAIPHALQGKDVLGIAQTGTGKTASFVLPMLTR 73
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ I KNH + + L+GG F +
Sbjct: 74 LEKGRARARMP-----RTLILEPTRELAAQVEENFIKYGKNHK-LNIALLIGGVSFDEQE 127
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I +
Sbjct: 128 KKLERG-ADVLIATPGRLLDHRERGKLL---LNGVEILVIDEADRMLDMGFIPDIERICE 183
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 184 MIPFTRQTLFFSATMPPEIT 203
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 119/208 (57%), Gaps = 5/208 (2%)
Query: 372 EEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
E P FD G+ P ++ALT +GY + T +Q A + G D + A+TGTGK+
Sbjct: 6 EAPANESVTFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTA 65
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
F LP I +L ++S + P+ LIL PTRELA Q+ + +A + + +
Sbjct: 66 GFSLPIIHNLLPDANTSASPARHPVRALILTPTRELADQV-YDNVAKYAKYTALRSAVVF 124
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG +L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF
Sbjct: 125 GGVDMNPQTEQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGF 180
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579
D++ I++ LP RQ+LLFSAT E+
Sbjct: 181 LPDLQRIINLLPAHRQTLLFSATFSPEI 208
>gi|423468785|ref|ZP_17445529.1| hypothetical protein IEM_00091 [Bacillus cereus BAG6O-2]
gi|402440136|gb|EJV72129.1| hypothetical protein IEM_00091 [Bacillus cereus BAG6O-2]
Length = 448
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI AE +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITAEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|423655270|ref|ZP_17630569.1| hypothetical protein IKG_02258 [Bacillus cereus VD200]
gi|401293332|gb|EJR98976.1| hypothetical protein IKG_02258 [Bacillus cereus VD200]
Length = 454
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + A+S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPASSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|421870283|ref|ZP_16301918.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
gi|358069809|emb|CCE52796.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
Length = 514
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 125/213 (58%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97
Query: 440 -AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IVD P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIEDIETIVDATPDTRQTMLFSATL 246
>gi|407718741|ref|YP_006796146.1| ATP-dependent RNA helicase [Leuconostoc carnosum JB16]
gi|407242497|gb|AFT82147.1| ATP-dependent RNA helicase [Leuconostoc carnosum JB16]
Length = 532
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 121/197 (61%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+T GY++ T +QE T+ L G+D + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I LI+ PTRELA Q AE + L + V + GG+ +
Sbjct: 62 HIDLNNKN--------IQALIVSPTRELAIQ-TAEELKKLGRDKRVDVQVVFGGSDIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF +D+E+I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHINRK---TVKIDNVKTLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSATMP
Sbjct: 169 KNTPADRQTLLFSATMP 185
>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 454
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 124/195 (63%), Gaps = 9/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E ++P +KA+TA GY T +Q+ + + G D + A+TGTGK+ AF+LPA++
Sbjct: 3 FEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPALQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ +T SS P VL+L PTRELA Q A + + + +++GG ++ +Q
Sbjct: 63 L--STPSSVPGKGP--RVLVLTPTRELAGQCIDAARSYGRGAR-LRCGSILGGMPYR-EQ 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL S P ++VATPGRLLDH+E S + L L+MLVLDEAD +LD+GF +D+E IV
Sbjct: 117 LRLLSAPVDLIVATPGRLLDHLERGS---IALNRLEMLVLDEADRMLDMGFSEDMEKIVS 173
Query: 561 CLPRRRQSLLFSATM 575
P+ RQ+L+F+ATM
Sbjct: 174 AAPQERQTLMFTATM 188
>gi|427823241|ref|ZP_18990303.1| putative ATP-dependent RNA helicase, partial [Bordetella
bronchiseptica Bbr77]
gi|410588506|emb|CCN03565.1| putative ATP-dependent RNA helicase, partial [Bordetella
bronchiseptica Bbr77]
Length = 471
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 123/195 (63%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL+ AG+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 15 FEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNR 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + +N G+ T+VGG +
Sbjct: 75 IAHQPGNKGVG----VQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQL 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 131 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 186
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 187 RLPKERQTLLFSATL 201
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTSLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
Length = 482
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340790566|ref|YP_004756031.1| ATP-dependent RNA helicase [Brucella pinnipedialis B2/94]
gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340559025|gb|AEK54263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella
pinnipedialis B2/94]
Length = 482
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2083]
gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
HTCC2083]
Length = 495
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 116/200 (58%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + + P +KA+ AGY T +QE + LEG+D + A+TGTGK+ +F LP I
Sbjct: 3 KFSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ K + + L+LCPTRELA+Q+A K H + L+GG FK +
Sbjct: 63 MLGKGRARARMP-----RSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFK-E 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q RL +L+ATPGRLLDH+E L L G++++V+DEAD +LD+GF D+E I
Sbjct: 117 QDRLIDKGVDVLIATPGRLLDHVERGKLL---LTGVQVMVVDEADRMLDMGFIPDIERIF 173
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 174 GLTPFTRQTLFFSATMAPEI 193
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 95 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTSLRSAVVFGGVDMNPQM 153
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 154 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 210 LLPKERQTLLFSATFSPE-IKKLASTYL 236
>gi|423407759|ref|ZP_17384908.1| hypothetical protein ICY_02444 [Bacillus cereus BAG2X1-3]
gi|401659085|gb|EJS76574.1| hypothetical protein ICY_02444 [Bacillus cereus BAG2X1-3]
Length = 454
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS + L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISEIFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI AE +L + I VL + GG
Sbjct: 65 EKIDSESSD--------VQALIVAPTRELALQITAEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 5/208 (2%)
Query: 372 EEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
E P FD G+ P ++AL +GY + T +Q A + + G+D + A+TGTGK+
Sbjct: 8 EAPANESVTFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTA 67
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
F LP I+ +L ++S + P+ LIL PTRELA Q+ + +A + + +
Sbjct: 68 GFSLPIIQNLLPEANTSASPARHPVRALILTPTRELADQV-YDNVAKYGKYTALRSAVVF 126
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG +L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF
Sbjct: 127 GGVDMNPQTEQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGF 182
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579
D++ I++ LP RQ+LLFSAT E+
Sbjct: 183 LPDLQRIINLLPAHRQTLLFSATFSPEI 210
>gi|422009651|ref|ZP_16356634.1| ATP-dependent RNA helicase DbpA [Providencia rettgeri Dmel1]
gi|414093469|gb|EKT55141.1| ATP-dependent RNA helicase DbpA [Providencia rettgeri Dmel1]
Length = 457
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 113/185 (61%), Gaps = 18/185 (9%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTTQLVP 454
GY+ MT++Q A L L GKD +AKTG+GK+ F LL I+A L T S
Sbjct: 22 GYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTATFGLGLLQHIDAKLFKTQS------- 74
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
L+LCPTRELA Q+A E L + I +LTL GG F V QR + I+VAT
Sbjct: 75 ----LVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSV-QRDSLAHAAHIIVAT 129
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574
PGRLLDH+ ++ V+L L++LVLDEAD +LD+GF D+E I+D P RQ+LLFSAT
Sbjct: 130 PGRLLDHLNRET---VQLDALQILVLDEADRMLDMGFMPDIETIIDYTPINRQTLLFSAT 186
Query: 575 MPKEL 579
P E+
Sbjct: 187 WPDEI 191
>gi|310829374|ref|YP_003961731.1| hypothetical protein [Eubacterium limosum KIST612]
gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
Length = 547
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 128/208 (61%), Gaps = 13/208 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E I+ ++A+ G++ MT +QE + +EG D + K++TGTGK++AF +PAIE
Sbjct: 2 KFRELEINEQLLRAIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ +L P VL+L PTRELA Q++ E +LK I V+ + GG +
Sbjct: 62 KI-------DPELRKP-QVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAVFGGASIENQ 113
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+S QI+V TPGR++DH+ K +++ L M VLDEAD +L++GFR+D+E I+
Sbjct: 114 IRDLKSG-AQIVVGTPGRVMDHMRRK---TLKFNALTMAVLDEADEMLNMGFREDIELIL 169
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTY 587
D + Q++LFSATMPK +LK TY
Sbjct: 170 DAVDHDVQTVLFSATMPKP-ILKIAETY 196
>gi|302838348|ref|XP_002950732.1| hypothetical protein VOLCADRAFT_91218 [Volvox carteri f.
nagariensis]
gi|300263849|gb|EFJ48047.1| hypothetical protein VOLCADRAFT_91218 [Volvox carteri f.
nagariensis]
Length = 1262
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 149/282 (52%), Gaps = 32/282 (11%)
Query: 376 LSQKRFDECGISPLTIKALTAA-GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
LS K+F E IS + +AL+ Y + VQ A++ CL +D + KAKTGTGK++AF+
Sbjct: 64 LSDKKFGEFSISLSSKRALSEVLRYELCSLVQAASIPVCLGPEDVIAKAKTGTGKTLAFI 123
Query: 435 LPAIEAVLKATSSSTTQLVPP--IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
+P IE VL + PP + L+L PTRELA QI E +L H G+ + + G
Sbjct: 124 IPTIEKVL-------ARRAPPGKVSALVLSPTRELARQIQTETHKMLTFHPGLHSMVVYG 176
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKS--GLSVRLMGLKMLVLDEADHLLDLG 550
G K R L IL+ATPGR D + L+ L ++LVLDEAD+LLD+G
Sbjct: 177 GVDVKKHLRALSQRMPDILIATPGRCWDIMTQSHDRALTTVLDSTRVLVLDEADNLLDMG 236
Query: 551 FRKDVENIVDCLP--RRRQSLLFSATMP------KELVLKREHTYIDTVG---------- 592
FR + I+ LP +RQ+ LFSAT P ++ LKR+H Y+D VG
Sbjct: 237 FRPQISKILGSLPPTSQRQTFLFSATFPADVKSLADVALKRQHRYVDAVGEDVATHTHVE 296
Query: 593 LGSVETPVKVSKYNIYVFVLVLSIKIQA--FYIICFVYTISM 632
S+ P++ + + + L+ + Q + II F+ T ++
Sbjct: 297 ASSLVVPLQRGELALQLLGLIAAHIAQEPDYKIIVFLPTANL 338
>gi|423523689|ref|ZP_17500162.1| hypothetical protein IGC_03072 [Bacillus cereus HuA4-10]
gi|401170825|gb|EJQ78060.1| hypothetical protein IGC_03072 [Bacillus cereus HuA4-10]
Length = 450
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+
Sbjct: 1 MVNMKNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPDSKQTMLFSATMPKDI 193
>gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
Length = 482
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
versatilis 301]
gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera versatilis
301]
Length = 466
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 128/208 (61%), Gaps = 5/208 (2%)
Query: 372 EEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
E +L F + G++P +KALT +GY + T +Q + L G D + A+TGTGK+
Sbjct: 3 ETVVLENLAFTDLGLAPELLKALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTA 62
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF LP ++ +L SSS + P+ LIL PTRELA Q+ E++ H + L +
Sbjct: 63 AFALPLLQKLLPLASSSASPAKHPVRALILTPTRELAIQV-EESVKAYAKHTPLRSLVVY 121
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG K L++ ++LVATPGRLLDHIE K +++L +++LVLDEAD +LD+GF
Sbjct: 122 GGVDIKTQTPHLKTG-VEVLVATPGRLLDHIEQK---TIQLNQVQILVLDEADRMLDMGF 177
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579
D++ I+ LP++RQ+L+FSAT ++
Sbjct: 178 MPDLKRILALLPKQRQNLMFSATFSNDI 205
>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25090073|sp|Q8K9H6.1|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 601
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 122/203 (60%), Gaps = 12/203 (5%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
++ F G++P IK+L+ GY++ + +Q A + LEG+D + A+TG+GK+ AF LP
Sbjct: 4 TESTFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLP 63
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ + L P +L+L PTRELA Q+A K GI VL L GG R+
Sbjct: 64 LLHNL-------NINLKAP-QILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRY 115
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+V R L P QI+V TPGRLLDH+ K G ++ L L LVLDEAD +L +GF +DVE
Sbjct: 116 EVQLRALRQGP-QIVVGTPGRLLDHL--KRG-TLNLSNLYALVLDEADEMLRMGFIEDVE 171
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
I+ +P+ Q+ LFSATMP+ +
Sbjct: 172 TIMSQIPKEHQTALFSATMPEAI 194
>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 538
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 16/225 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI ++ L G + T VQ+ ++ L+GKD + +AKTGTGK++AF+LP ++
Sbjct: 14 FQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQH 73
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVD 499
+ + P LI+ PTRELA QI EA L DGI +L + GG +
Sbjct: 74 I------DPKRAYP--QALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQ 125
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+LE Q+++ TPGRLLDH+ + + L G+K LVLDEAD +L +GF +VE ++
Sbjct: 126 LRKLEGG-RQLIIGTPGRLLDHLRRGT---LELGGVKQLVLDEADQMLHMGFLDEVEALI 181
Query: 560 DCLPRRRQSLLFSATMP---KELVLKREHTYIDTVGLGSVETPVK 601
LP RRQ++LFSATMP K+L + +D V G+ P++
Sbjct: 182 HALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLE 226
>gi|62289879|ref|YP_221672.1| DEAD/DEAH box helicase [Brucella abortus bv. 1 str. 9-941]
gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|376273333|ref|YP_005151911.1| DEAD/DEAH box helicase [Brucella abortus A13334]
gi|423166951|ref|ZP_17153654.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|423170675|ref|ZP_17157350.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|423173245|ref|ZP_17159916.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|423177470|ref|ZP_17164116.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|423180106|ref|ZP_17166747.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|423183238|ref|ZP_17169875.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|423185822|ref|ZP_17172436.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
gi|423188960|ref|ZP_17175570.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
bv. 1 str. 9-941]
gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Brucella melitensis biovar Abortus 2308]
gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|363400939|gb|AEW17909.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
A13334]
gi|374540723|gb|EHR12223.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|374542573|gb|EHR14061.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|374542884|gb|EHR14369.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|374549951|gb|EHR21393.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|374550470|gb|EHR21909.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|374550754|gb|EHR22190.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|374558618|gb|EHR30011.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|374559616|gb|EHR31002.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
Length = 482
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|376274316|ref|YP_005114755.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
gi|376280615|ref|YP_005154621.1| DEAD/DEAH box helicase [Brucella suis VBI22]
gi|384224609|ref|YP_005615773.1| DEAD/DEAH box helicase [Brucella suis 1330]
gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
1330]
gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
23365]
gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|343382789|gb|AEM18281.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|358258214|gb|AEU05949.1| DEAD-box ATP dependent DNA helicase [Brucella suis VBI22]
gi|363402883|gb|AEW13178.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
Length = 482
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++AL+ GY + T +Q + L GKD + A+TGTGK+ F LP I+
Sbjct: 21 FDSFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 80
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 81 LLPLANASASPARHPVRALMLTPTRELADQV-YDNVARYARHTDLRSTVVFGGVDMNPQT 139
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 140 DALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQRIIN 195
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT E+
Sbjct: 196 LLPAKRQTLLFSATFSPEI 214
>gi|448820186|ref|YP_007413348.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
gi|448273683|gb|AGE38202.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
Length = 528
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ AGY + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I L++ PTRELA Q E L K+ V + GG +
Sbjct: 62 RLDFDNHN--------IQALVVSPTRELAIQTQEEIFRLGKDERA-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ +P Q++V TPGRLLDHI + V+L +KMLVLDEAD +L++GF +D+E+I+
Sbjct: 113 IRNLKQNP-QVIVGTPGRLLDHIRRGT---VKLDHVKMLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P RQ++LFSATMP E+
Sbjct: 169 KQVPDERQTMLFSATMPPEI 188
>gi|407780047|ref|ZP_11127295.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
gi|407298177|gb|EKF17321.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
Length = 477
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 119/200 (59%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+T AGY + T +Q + L GKD + A+TGTGK+ +F+LP +
Sbjct: 3 FSDLGLSPKVLSAVTDAGYTEPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFVLPMLTR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + + LIL PTRELA+Q+ + KNH + + L+GG F +
Sbjct: 63 LERGRARARMP-----RTLILEPTRELAAQVEENFVKYGKNHR-LNIALLIGGVSFDEQE 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 117 KKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 172
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 173 LIPFTRQTLFFSATMPPEIT 192
>gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
Length = 391
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 126/208 (60%), Gaps = 12/208 (5%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
E + Q R+ + G+SP ++A+ GY+Q T VQ ++ +E KD + KA TGTGK+ A
Sbjct: 6 EIVNDQVRYADLGLSPELMRAIDKKGYVQATPVQGGSIPYFMEYKDVIAKAPTGTGKTFA 65
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
F +P +E + + + L+L PTRELA QI E L +G+ + L G
Sbjct: 66 FGIPMVEHIDPESRD--------VQGLVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYG 117
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G +L+ DP QI+VATPGRL+DH++ + +VRL ++ +VLDEAD +LD+GF
Sbjct: 118 GQPIDKQITQLKKDP-QIVVATPGRLMDHVKRR---TVRLDKVQTVVLDEADRMLDMGFI 173
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKELV 580
KDV I+D +P+RR LFSAT+ +E++
Sbjct: 174 KDVTRILDLMPKRRNLGLFSATISREVM 201
>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
Length = 482
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|421879169|ref|ZP_16310642.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
gi|390446968|emb|CCF26762.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
Length = 522
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+ GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + I LI+ PTRELA Q AE + L + V + GG +
Sbjct: 62 HIDLSNKN--------IQALIVSPTRELAIQ-TAEELKKLGRDKHVDVQVVFGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF D+E+I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHINRK---TVKIDNVKTLVLDEADEMLNMGFLDDIESII 168
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSATMP
Sbjct: 169 KNTPADRQTLLFSATMP 185
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 87 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 147 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTSLRSAVVFGGVDMNPQM 205
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 206 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 261
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 262 LLPKERQTLLFSATFSPE-IKKLASTYL 288
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 5/206 (2%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P RF + G+SP ++AL GY+ T +Q + L+G+D + A+TGTGK+ F
Sbjct: 23 PTTPTVRFADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKTAGF 82
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LP I+ +L ++S + P+ LIL PTRELA Q+ AE + H + + GG
Sbjct: 83 SLPIIQLLLAHANTSASPARHPVRALILTPTRELADQV-AENVKAYCRHTPLRSTVVFGG 141
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
L S +I++ATPGRLLDH++ K ++ L ++LV+DEAD +LD+GF
Sbjct: 142 VDIAPQTAALRSG-IEIVIATPGRLLDHVQQK---TLNLSQTQILVMDEADRMLDMGFLP 197
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
D++ I++ LP+ RQ+L+FSAT E+
Sbjct: 198 DLQRIINLLPKERQNLMFSATFSGEI 223
>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 458
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + A+S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPASSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
16M]
gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|384211314|ref|YP_005600396.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|384408416|ref|YP_005597037.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|384445012|ref|YP_005603731.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
16M]
gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|349743004|gb|AEQ08547.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
Length = 482
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 123/200 (61%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+T+ GY + T +Q T+ L G+D + +A+TGTGK+ AF LP +E
Sbjct: 2 KFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ K+ + + L++ PTRELA Q E I L + V + GG +
Sbjct: 62 KIDKSNEN--------VQALVVSPTRELAIQ-TQEEIYKLGRTERANVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ P Q++V TPGRLLDHI +++L ++MLVLDEAD +L++GF D+E+I+
Sbjct: 113 IKSLKNHP-QVVVGTPGRLLDHIRRH---TLKLDHVQMLVLDEADEMLNMGFLDDIEDII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP RQ++LFSATMP E+
Sbjct: 169 KQLPEERQTMLFSATMPPEI 188
>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
Length = 482
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|414596566|ref|ZP_11446140.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
gi|421876447|ref|ZP_16308004.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|372557740|emb|CCF24124.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|390482587|emb|CCF28201.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
Length = 522
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+ GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + I LI+ PTRELA Q AE + L + V + GG +
Sbjct: 62 HIDLSNKN--------IQALIVSPTRELAIQ-TAEELKKLGRDKHVDVQVVFGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF D+E+I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHINRK---TVKIDNVKTLVLDEADEMLNMGFLDDIESII 168
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSATMP
Sbjct: 169 KNTPADRQTLLFSATMP 185
>gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031534|ref|YP_004888525.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|418274186|ref|ZP_12889684.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240777|emb|CCC78011.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|376009752|gb|EHS83078.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 528
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ AGY + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I L++ PTRELA Q E L K+ V + GG +
Sbjct: 62 RLDFDNHN--------IQALVVSPTRELAIQTQEEIFRLGKDERA-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ +P Q++V TPGRLLDHI + V+L +KMLVLDEAD +L++GF +D+E+I+
Sbjct: 113 IRNLKQNP-QVIVGTPGRLLDHIRRGT---VKLDHVKMLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P RQ++LFSATMP E+
Sbjct: 169 KQVPDERQTMLFSATMPPEI 188
>gi|326480409|gb|EGE04419.1| ATP-dependent RNA helicase mss116 [Trichophyton equinum CBS 127.97]
Length = 643
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 165/327 (50%), Gaps = 27/327 (8%)
Query: 315 KMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEP 374
++ +++L K+ ++ R+P+ L F + + N ++ E E
Sbjct: 19 RLPVASTLAKHSIR---RLPIAPLLTSRAFHASPQF---RVPAGTANAGVAVEDVGEAEL 72
Query: 375 ILSQKRFDECGI-SPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
I E G+ I A+T G MT VQ T++ ++G D + +AKTGTGK++A
Sbjct: 73 ITEFSELGEKGVVDQRLINAITKGMGLKTMTDVQAQTINESIQGIDMIAQAKTGTGKTVA 132
Query: 433 FLLPAIEAVLKATSSSTTQL----VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
FLLP I +L+ + + I +++ PTRELA QIA EA + + G+ V
Sbjct: 133 FLLPVIHIILQDPTLGNLRRNFASAQDIRAVVISPTRELAEQIAVEAQKITRG-SGLKVQ 191
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
T VGGTR + RL+ + C ILV TPGRL+D + + V L+ VLDEAD LLD
Sbjct: 192 TAVGGTRKREGLMRLQREGCHILVGTPGRLMDLFSDPTS-GVAAPKLQAFVLDEADRLLD 250
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------VLKREHTYIDTVGLGSVET 598
+GF D+E I P R RQ+L+FSAT+PK + +LK + +++TVG ET
Sbjct: 251 IGFAPDIERIQSFFPSRSQVDRQTLMFSATIPKSVKGLARSMLKPDFIFVNTVG---DET 307
Query: 599 PVKVSKYNIYVFVLVLSIKIQAFYIIC 625
P + VF+ ++ A + I
Sbjct: 308 PTHLRVPQRAVFLRGFENQLPALFEIA 334
>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
Length = 482
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 121/199 (60%), Gaps = 15/199 (7%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +QE + +EG+D + +A+TGTGK+ AF +P I
Sbjct: 2 KTFSEFGLEPKVLRAITEMGFEESTPIQEKAIPIAMEGRDLIGQAQTGTGKTAAFGIPLI 61
Query: 439 EAV-LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+ +K I LI+CPTRELA Q+ AE I L GI L + GG
Sbjct: 62 NKIDIKEER---------IVALIMCPTRELAIQV-AEEIEKLGRFKGIRSLPIYGGQDIV 111
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
R L P QI++ TPGRLLDHI K +++L ++ ++LDEAD +LD+GF +D+++
Sbjct: 112 KQIRALRKKP-QIIIGTPGRLLDHINRK---TIKLDDVQTVILDEADEMLDMGFMEDIQS 167
Query: 558 IVDCLPRRRQSLLFSATMP 576
I+ +P RQ++LFSATMP
Sbjct: 168 ILKLVPDERQTMLFSATMP 186
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 118/201 (58%), Gaps = 5/201 (2%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ F + G+ PL +K++ GY T +Q + +EG+D + A+TGTGK+ AF LP +
Sbjct: 17 RTFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPIL 76
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ ++S + P+ LIL PTRELA Q+ E++ H + + GG
Sbjct: 77 HRLMPLANTSASPARHPVRALILTPTRELADQV-YESVKRYSLHTPLRSAVVFGGVDIGP 135
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L C++LVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D+E I
Sbjct: 136 QKEALRRG-CEVLVATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLERI 191
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ LP +RQ LLFSAT E+
Sbjct: 192 IRLLPAQRQGLLFSATFSNEI 212
>gi|404450977|ref|ZP_11015952.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763394|gb|EJZ24353.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 578
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GIS ++A+ GY Q + +Q ++ LEGKD + +A+TGTGK+ AF +P I+
Sbjct: 7 FSDLGISAEILRAVEEMGYTQPSTIQSQSIPFMLEGKDVIGQAQTGTGKTAAFGIPIIDN 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V A + LILCPTRELA Q+ E + L K GI + GG
Sbjct: 67 VDPAINKPQA--------LILCPTRELAVQVEGEIVKLSKFKRGISSTCIYGGEAIDRQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ QI+V TPGR++DHI+ + ++L ++++VLDEAD +LD+GFR+D+E+I+
Sbjct: 119 RSLKKG-VQIVVGTPGRIMDHIDRGT---LKLDLVRIIVLDEADEMLDMGFREDIESILG 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
P RQ++ FSATMPK ++
Sbjct: 175 DCPEERQTVFFSATMPKPIL 194
>gi|326475247|gb|EGD99256.1| hypothetical protein TESG_06523 [Trichophyton tonsurans CBS 112818]
Length = 643
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 165/327 (50%), Gaps = 27/327 (8%)
Query: 315 KMGSSASLGKYDMKITKRVPLKSLEDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEP 374
++ +++L K+ ++ R+P+ L F + + N ++ E E
Sbjct: 19 RLPVASTLAKHSIR---RLPIAPLLTSRAFHASPQF---RVPAGTANAGVAVEDVGEAEL 72
Query: 375 ILSQKRFDECGI-SPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
I E G+ I A+T G MT VQ T++ ++G D + +AKTGTGK++A
Sbjct: 73 ITEFSELGEKGVVDQRLINAITKGMGLKTMTDVQAQTINESIQGIDMIAQAKTGTGKTVA 132
Query: 433 FLLPAIEAVLKATSSSTTQL----VPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
FLLP I +L+ + + I +++ PTRELA QIA EA + + G+ V
Sbjct: 133 FLLPVIHRILQDPTLGNLRRNFASAQDIRAVVISPTRELAEQIAVEAQKITRG-SGLKVQ 191
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
T VGGTR + RL+ + C ILV TPGRL+D + + V L+ VLDEAD LLD
Sbjct: 192 TAVGGTRKREGLMRLQREGCHILVGTPGRLMDLFSDPTS-GVAAPKLQAFVLDEADRLLD 250
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKEL------VLKREHTYIDTVGLGSVET 598
+GF D+E I P R RQ+L+FSAT+PK + +LK + +++TVG ET
Sbjct: 251 IGFAPDIERIQSFFPSRSQVDRQTLMFSATIPKSVKGLARSMLKPDFIFVNTVG---DET 307
Query: 599 PVKVSKYNIYVFVLVLSIKIQAFYIIC 625
P + VF+ ++ A + I
Sbjct: 308 PTHLRVPQRAVFLRGFENQLPALFEIA 334
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 124/208 (59%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 19 FDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + ++S + P+ L+L PTRELA Q+AA + H + + GG
Sbjct: 79 LLPSANTSASPARHPVRALMLTPTRELADQVAAN-VQTYSKHTPLRSTVVFGGVDMNPQS 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K +V L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 138 DALRRG-VEILIATPGRLLDHVQQK---TVNLGQVQMLVLDEADRMLDMGFLPDLQRILN 193
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 194 LLPKERQTLLFSATFSPE-IKKLASTYL 220
>gi|423568610|ref|ZP_17544857.1| hypothetical protein II7_01833 [Bacillus cereus MSX-A12]
gi|401210898|gb|EJR17649.1| hypothetical protein II7_01833 [Bacillus cereus MSX-A12]
Length = 454
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+
Sbjct: 1 MVNVKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
RRL+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRRLKGN-THIVVATPGRLLDHIRRE---TIDLSNLTTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|456062808|ref|YP_007501778.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
gi|455440105|gb|AGG33043.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
Length = 472
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 125/210 (59%), Gaps = 6/210 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P KA++ GY T +Q ++ L G D + A+TGTGK+ AF+LP I+
Sbjct: 26 FADFGLDPKIQKAVSEQGYNTPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPIIQK 85
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ SSS + PI L+L PTRELA Q+A A A H + + GG K +Q
Sbjct: 86 ILRHASSSASPARHPIRALVLTPTRELAVQVAENA-ANYSKHTDLRAAVVYGGVDMK-EQ 143
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ +IL+ATPGRLLDHI +K L +++LVLDEAD +LD+GF D++ I+D
Sbjct: 144 VAILRGGVEILIATPGRLLDHIGSKVA---NLSQVEILVLDEADRMLDMGFLPDLQRIID 200
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDT 590
+P +RQ+LLFSAT E + K +Y+ T
Sbjct: 201 LIPAQRQTLLFSATFSPE-IKKLAQSYLRT 229
>gi|302886988|ref|XP_003042383.1| hypothetical protein NECHADRAFT_51970 [Nectria haematococca mpVI
77-13-4]
gi|256723293|gb|EEU36670.1| hypothetical protein NECHADRAFT_51970 [Nectria haematococca mpVI
77-13-4]
Length = 565
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 143/251 (56%), Gaps = 23/251 (9%)
Query: 376 LSQKRFD----ECGISPLTIKALTA-AGYIQMTRVQEATLSACLEG--KDAVVKAKTGTG 428
L +RFD + + PL I+ +T G+ MT VQ AT+ L D +V+AKTGTG
Sbjct: 67 LGTRRFDGLLEQNQVHPLVIRTITEDMGFEFMTPVQAATVDELLPPNRSDCLVQAKTGTG 126
Query: 429 KSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
K++AFLLPA++ +L I +L++ PTRELA QI+ EA LL+ V
Sbjct: 127 KTMAFLLPALQTMLTENRPVDAG----ISLLVISPTRELAMQISTEATKLLQRLPRYRVQ 182
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
+GGT +++++ S C IL+ATPGRLLDH+ N+ + L + LVLDEAD LLD
Sbjct: 183 IAIGGTNKDREEKQILSG-CDILIATPGRLLDHLSNEE-IVYSLRNVNSLVLDEADRLLD 240
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMPKE------LVLKREHTYIDTVGLGSVET 598
+GF KD+ IV+ LP + RQ +LFSAT+ LVL + +I T+ G V T
Sbjct: 241 MGFMKDLREIVNRLPDKKDTNRQGMLFSATIAPHVQQVAGLVLAPGYKFISTIPAGEVNT 300
Query: 599 PVKVSKYNIYV 609
+V ++ + V
Sbjct: 301 HERVPQFLVEV 311
>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 538
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 16/225 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI ++ L G + T VQ+ ++ L+GKD + +AKTGTGK++AF+LP ++
Sbjct: 14 FQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQH 73
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVD 499
+ + P LI+ PTRELA QI EA L DGI +L + GG +
Sbjct: 74 I------DPKRAYP--QALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQ 125
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+LE Q+++ TPGRLLDH+ ++ L G+K LVLDEAD +L +GF +VE ++
Sbjct: 126 LRKLEGG-RQLIIGTPGRLLDHLRRG---TLELGGVKQLVLDEADQMLHMGFLDEVEALI 181
Query: 560 DCLPRRRQSLLFSATMP---KELVLKREHTYIDTVGLGSVETPVK 601
LP RRQ++LFSATMP K+L + +D V G+ P++
Sbjct: 182 HALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLE 226
>gi|147902341|ref|NP_001084744.1| uncharacterized protein LOC414715 [Xenopus laevis]
gi|46329511|gb|AAH68907.1| MGC83105 protein [Xenopus laevis]
Length = 638
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 146/251 (58%), Gaps = 29/251 (11%)
Query: 357 KNKLNGNGEKKEKREEE----PILSQKRFDECGISPL-------TIKALTAAGYIQMTRV 405
++K + EKKE EE P+ F++ S L T+KA+T G+ MT +
Sbjct: 112 ESKCENHVEKKEDEEENGPTLPMGLTGAFEDTAFSSLADSVNENTLKAITEMGFTHMTEI 171
Query: 406 QEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP--PIYVLILCP 463
Q + LEG+D + A+TG+GK++AFL+PAIE + K + +P VLIL P
Sbjct: 172 QHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAIELIYK------LKFMPRNGTGVLILSP 225
Query: 464 TRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE 523
TRELA Q L+ +H L ++GG+ + ++L ++ I+VATPGRLLDH++
Sbjct: 226 TRELAMQTYGVLKELMAHHVHTFGL-IMGGSNRSAEAQKL-ANGVNIVVATPGRLLDHMQ 283
Query: 524 NKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE----- 578
N G + L+ LV+DEAD +L++GF ++++ I++ LP+RRQ++LFSAT ++
Sbjct: 284 NTPGFMYK--NLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTMLFSATQTRKVEDLA 341
Query: 579 -LVLKREHTYI 588
+ +K+E Y+
Sbjct: 342 RISMKKEPLYV 352
>gi|410456811|ref|ZP_11310665.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
gi|409927363|gb|EKN64500.1| DEAD/DEAH box helicase [Bacillus bataviensis LMG 21833]
Length = 450
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GIS + L G + T +QE + + G D + +A+TGTGK+ AF+LP +E
Sbjct: 4 FLSLGISETVVNQLRGYGVAKPTPIQEQAIPFVMNGNDIIAQAQTGTGKTFAFILPILEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + I LI+ PTRELA QI AE L+ + G+ VL GG
Sbjct: 64 IDKDAAH--------IQALIVTPTRELALQITAEIEKLIADLPGVAVLAAYGGQDVDKQL 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ +P QI+V TPGRLLDHI + +VRL + LVLDEAD +L +GF +VE+I+
Sbjct: 116 KKLKRNP-QIVVGTPGRLLDHIRRE---TVRLSEISFLVLDEADQMLHIGFLGEVEDIIR 171
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ++LFSATMP E+
Sbjct: 172 ETPVTRQTMLFSATMPPEI 190
>gi|385207461|ref|ZP_10034329.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385179799|gb|EIF29075.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 467
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 12/207 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P + F + + P T+ LT GY++MT +Q A+L L G D + +AKTG+GK+ AF
Sbjct: 4 PTTAGAPFSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAF 63
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L A+ A L + + + ++LCPTRELA Q+ E L + + I VLTL GG
Sbjct: 64 SL-ALLARLDVRNFA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGG 115
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + LE I+V TPGR++DH+E S + L L LVLDEAD +LD+GF
Sbjct: 116 TPMRPQTASLEHG-AHIVVGTPGRIMDHLERGS---LPLQSLNTLVLDEADRMLDMGFFD 171
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELV 580
D+ +V P+ RQ+LLFSAT P+ +V
Sbjct: 172 DIATVVKQCPKERQTLLFSATYPEGIV 198
>gi|423482311|ref|ZP_17459001.1| hypothetical protein IEQ_02089 [Bacillus cereus BAG6X1-2]
gi|401143615|gb|EJQ51149.1| hypothetical protein IEQ_02089 [Bacillus cereus BAG6X1-2]
Length = 442
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|347540439|ref|YP_004847864.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345643617|dbj|BAK77450.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 438
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 119/195 (61%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G++P AL AAGY T VQ A++ A L G D +V A+TG+GK+ AFLLP+++
Sbjct: 3 FADLGLAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSLQ- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
K T ST P +L+L PTRELA Q+ A + + LVGG F Q
Sbjct: 62 --KLTERSTGSGQGP-RILVLTPTRELAQQVEKNATEYGSQLRWLRTVCLVGGASFGY-Q 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R + P I+VATPGRL+DH+ +SG + L+ML+LDEAD +LD+GF +D+E IV
Sbjct: 118 IRAMARPVDIMVATPGRLMDHM--RSG-RIDFSRLEMLILDEADRMLDMGFIEDIETIVK 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ++LFSAT+
Sbjct: 175 ATPDSRQTVLFSATL 189
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ P ++AL +GY + T +Q A + + G+D + A+TGTGK+ F LP I+
Sbjct: 3 FDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQN 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+ + +A + + + GG
Sbjct: 63 LLPEANTSASPARHPVRALILTPTRELADQV-YDNVAKYGKYTALRSAVVFGGVDMNPQT 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +ILVATPGRLLDH++ + SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 122 EQLRRG-VEILVATPGRLLDHVQQR---SVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 178 LLPAHRQTLLFSATFSPEI 196
>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 438
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 119/195 (61%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G++P AL AAGY T VQ A++ A L G D +V A+TG+GK+ AFLLP+++
Sbjct: 3 FADLGLAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSLQ- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
K T ST P +L+L PTRELA Q+ A + + LVGG F Q
Sbjct: 62 --KLTERSTGSGQGP-RILVLTPTRELAQQVEKNATEYGSQLRWLRTVCLVGGASFGY-Q 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R + P I+VATPGRL+DH+ +SG + L+ML+LDEAD +LD+GF +D+E IV
Sbjct: 118 IRAMARPVDIMVATPGRLMDHM--RSG-RIDFSRLEMLILDEADRMLDMGFIEDIETIVK 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ++LFSAT+
Sbjct: 175 ATPDSRQTVLFSATL 189
>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 533
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 118/195 (60%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+ PL +K++ AAGY T VQ+ + A L G D +V + TG+GK+ AFLLP+I+
Sbjct: 3 FSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + + + P VL+L PTRELA Q+ A+ K LVGG + +
Sbjct: 63 LL---AEPAVKSIGP-RVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQL 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+RL S P ++VATPGRL+DH+E + L++LVLDEAD +LD+GF D++ I
Sbjct: 119 KRL-SQPVDVVVATPGRLIDHLERG---KIDFSRLEVLVLDEADRMLDMGFVDDIKAIAA 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ+LLFSAT+
Sbjct: 175 RCPAERQTLLFSATL 189
>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001218|ref|YP_007270961.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter
acetatoxydans Re1]
gi|432178012|emb|CCP24985.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
Length = 529
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 127/205 (61%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+SQ +F+E +S ++A+ G+ + T +Q + EG+D + +A+TGTGK+ AF L
Sbjct: 1 MSQMKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P ++ + T Q +ILCPTRELA Q+A E AL K +G+ +L + GG
Sbjct: 61 PILDMI--DTDDKNQQ------AIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ L+ QI++ TPGR++DH+ + ++L K++VLDEAD +LD+GFR+D+
Sbjct: 113 IERQIHALKRG-VQIIIGTPGRVMDHMRRHT---LKLQNTKIVVLDEADEMLDMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I++ P+ RQ+L+FSAT+PK ++
Sbjct: 169 EKILEDTPKARQTLMFSATIPKPIL 193
>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase [Planctomyces limnophilus DSM 3776]
gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
3776]
Length = 608
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 121/199 (60%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + ISP + A+TA+GY+ T +Q T+ +EG+D + A+TGTGK+ AF +P ++A
Sbjct: 14 FADLNISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQA 73
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ SSS TQ VLIL PTRELA Q+A N G+ V + GG +++
Sbjct: 74 I--DLSSSATQ------VLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQF 125
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L ++V TPGR++DHI S++L LK LVLDEAD +L +GF +DVE I++
Sbjct: 126 RQLNRG-AHVIVGTPGRVMDHIRRG---SLKLDSLKGLVLDEADEMLRMGFAEDVEWILE 181
Query: 561 CLPRRRQSLLFSATMPKEL 579
P +RQ LFSATMP +
Sbjct: 182 QTPSQRQIALFSATMPDSI 200
>gi|366090606|ref|ZP_09456972.1| ATP-dependent RNA helicase [Lactobacillus acidipiscis KCTC 13900]
Length = 503
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 125/201 (62%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +QE T+ L+ KD + +A+TGTGK+ AF LP I+
Sbjct: 2 KFSELGLDADILKAIKRSGFEEATPIQEETIPLVLKRKDVIGQAQTGTGKTAAFGLPIIQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q V I+ PTRELA Q E L K+ G V + GG +
Sbjct: 62 NI--DTSKRQIQAV------IISPTRELAIQTQEELFRLSKDKHG-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ P QILV TPGRLLDHI K+ V L ++ LVLDEAD +LD+GF +D+E+I+
Sbjct: 113 IQNLKNAP-QILVGTPGRLLDHIRRKT---VDLSHVRSLVLDEADEMLDMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+P+ RQ+LLFSAT+PK+++
Sbjct: 169 SSVPKERQTLLFSATIPKQIL 189
>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
Length = 450
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|389635279|ref|XP_003715292.1| hypothetical protein MGG_07099 [Magnaporthe oryzae 70-15]
gi|351647625|gb|EHA55485.1| hypothetical protein MGG_07099 [Magnaporthe oryzae 70-15]
gi|440466144|gb|ELQ35426.1| ATP-dependent RNA helicase mss116, mitochondrial precursor
[Magnaporthe oryzae Y34]
Length = 717
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 142/239 (59%), Gaps = 25/239 (10%)
Query: 391 IKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS-- 447
IKA+T Y MT VQ TL+ L+GKD V +AKTGTGK++AFL+P I+ +L A S
Sbjct: 89 IKAITVDMRYEDMTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFLIPVIQKILDADPSLK 148
Query: 448 STTQLVP-------PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ P I +I+ PTRELA QI EA L + +G+ V T VGGT +
Sbjct: 149 EVSRGRPRRFAQRQSIKAIIISPTRELAEQIGKEATRLCQ-RNGVTVQTAVGGTGKRESL 207
Query: 501 RRLESDPCQILVATPGRLLDHIENK-SGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
RR+ + C +LV TPGRL D + ++ SG+ ++ LVLDEAD +LD+GF ++ +IV
Sbjct: 208 RRIHMEGCHLLVGTPGRLNDLLSDELSGIDAS--NVQALVLDEADRMLDVGFENELRSIV 265
Query: 560 DCLPRR----RQSLLFSATMPKELV-LKREHT------YIDTVGLGSVETPVKVSKYNI 607
D LP R RQ+LLFSAT+PK +V L R + ++ TV ++T +V ++ +
Sbjct: 266 DMLPDRQQVPRQTLLFSATLPKNVVGLARWYVDKQNFEFVQTVRADEIQTHERVPQFIV 324
>gi|402821009|ref|ZP_10870569.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
gi|402510241|gb|EJW20510.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
Length = 481
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 10/201 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FDE G++P + A+ AGY T +Q + + G+D + A+TGTGK+ +F LP I
Sbjct: 2 KFDELGLAPEIMTAINEAGYTTPTPIQAEAIPHVIAGRDVLGIAQTGTGKTASFTLPMIH 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
++K + + LIL PTRELA+Q+A KN L L+GG F D
Sbjct: 62 RLMKGRAKARMP-----RTLILEPTRELAAQVADNFDVYGKNTKLTKAL-LIGGVSFG-D 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q + +L+ATPGRLLDH+E V L G+++LV+DEAD +LD+GF D+E IV
Sbjct: 115 QEKAIMRGADVLIATPGRLLDHVERGG---VLLRGVEVLVIDEADRMLDMGFIPDIERIV 171
Query: 560 DCLPRRRQSLLFSATMPKELV 580
LP RQ+L FSATMP E+
Sbjct: 172 KLLPFTRQTLFFSATMPPEIT 192
>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
Length = 435
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
Length = 482
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + NH + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGINHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
Length = 450
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
Length = 433
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 119/201 (59%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + + I VL + GG
Sbjct: 62 EKIDPESSD--------VQALIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDH+ + ++ L + MLVLDEAD +L GF D+E+I
Sbjct: 114 QMRKLKGN-THIVVATPGRLLDHLRRE---TIVLSNVSMLVLDEADQMLHFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ P +Q++LFSATMPK++
Sbjct: 170 LEETPESKQTMLFSATMPKDI 190
>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
Length = 447
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|319783267|ref|YP_004142743.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 520
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 118/200 (59%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+T AGY Q T +Q + L GKD + A+TGTGK+ +F+LP +
Sbjct: 3 FADLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLTR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + LIL PTRELA+Q+ I KNH + + L+GG F
Sbjct: 63 LENGRARARMP-----RTLILEPTRELAAQVEENFIRYGKNHK-LNIALLIGGVSFDEQN 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I +
Sbjct: 117 KKLERG-VDVLIATPGRLLDHRERGKLL---LNGVEILVIDEADRMLDMGFIPDIERICE 172
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 173 MIPFTRQTLFFSATMPPEIT 192
>gi|440480684|gb|ELQ61337.1| ATP-dependent RNA helicase mss116, mitochondrial precursor
[Magnaporthe oryzae P131]
Length = 653
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 142/239 (59%), Gaps = 25/239 (10%)
Query: 391 IKALTA-AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS-- 447
IKA+T Y MT VQ TL+ L+GKD V +AKTGTGK++AFL+P I+ +L A S
Sbjct: 89 IKAITVDMRYEDMTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFLIPVIQKILDADPSLK 148
Query: 448 STTQLVP-------PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ P I +I+ PTRELA QI EA L + +G+ V T VGGT +
Sbjct: 149 EVSRGRPRRFAQRQSIKAIIISPTRELAEQIGKEATRLCQ-RNGVTVQTAVGGTGKRESL 207
Query: 501 RRLESDPCQILVATPGRLLDHIENK-SGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
RR+ + C +LV TPGRL D + ++ SG+ ++ LVLDEAD +LD+GF ++ +IV
Sbjct: 208 RRIHMEGCHLLVGTPGRLNDLLSDELSGIDAS--NVQALVLDEADRMLDVGFENELRSIV 265
Query: 560 DCLPRR----RQSLLFSATMPKELV-LKREHT------YIDTVGLGSVETPVKVSKYNI 607
D LP R RQ+LLFSAT+PK +V L R + ++ TV ++T +V ++ +
Sbjct: 266 DMLPDRQQVPRQTLLFSATLPKNVVGLARWYVDKQNFEFVQTVRADEIQTHERVPQFIV 324
>gi|420157279|ref|ZP_14664117.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
gi|394756572|gb|EJF39652.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
Length = 414
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G +P ++ + GY + VQE + LE +D +V+A TGTGK+ AF LP +E
Sbjct: 5 FEKFGFTPELLRGIVKMGYCDPSPVQEVAIGPMLEKQDLLVQAPTGTGKTAAFGLPILEN 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V A I +ILCPTRELA Q + GI VL L GG +
Sbjct: 65 VNPADRQ--------IQAVILCPTRELAVQTTGVLKQMATYKQGIRVLALYGGEPIQRQI 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ P QI+VATPGR++DH+ ++ RL G+ +VLDEAD +LD+GFR+D+ I+
Sbjct: 117 MALKRCP-QIIVATPGRMMDHMRRRT---TRLSGVNCIVLDEADQMLDMGFREDIHTILQ 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
C+P RQ++LFSAT+ E+
Sbjct: 173 CVPTERQTVLFSATLSDEI 191
>gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase [Bacillus cereus AH820]
gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH820]
Length = 450
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 146/251 (58%), Gaps = 20/251 (7%)
Query: 358 NKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK 417
NKL+ K++++ ++++ +F++ +S KA++ G+ +M+ +Q + LEG
Sbjct: 28 NKLD-----KKRKDVVKLMNKLKFEDIKLSEEIQKAVSDMGFEEMSPIQSQAIPKLLEGI 82
Query: 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
D + +A+TGTGK+ AF +P IE S + ++LCPTREL+ Q+A E
Sbjct: 83 DIIGQAQTGTGKTAAFGIPIIEKCNGKDRS--------LQAMVLCPTRELSIQVAEEIRR 134
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537
L K I VL + GG + L+ QI+V TPGR++DHI K+ ++L ++M
Sbjct: 135 LAKYKRDIFVLPIYGGQPIDRQIKALKKG-VQIVVGTPGRIIDHIRRKT---LKLGSIRM 190
Query: 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV--LKREHTYIDTVGLGS 595
LVLDEAD + D+GFR D+E IV+ +P RQ++ FSATMPKE+V KR T T+ +
Sbjct: 191 LVLDEADEMFDMGFRDDIELIVNHMPEERQTIFFSATMPKEIVDFAKRYQTNPKTIKVVH 250
Query: 596 VETPV-KVSKY 605
E V +V +Y
Sbjct: 251 KELTVPRVEQY 261
>gi|423580692|ref|ZP_17556803.1| hypothetical protein IIA_02207 [Bacillus cereus VD014]
gi|401216558|gb|EJR23266.1| hypothetical protein IIA_02207 [Bacillus cereus VD014]
Length = 458
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + A+S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPASSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|408355702|ref|YP_006844233.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
gi|407726473|dbj|BAM46471.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
Length = 483
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 121/199 (60%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E IS +KAL+ G+ + T +QE T+ L+G+D + +A+TGTGK+ AF +P IE
Sbjct: 4 FQELNISAPILKALSNMGFEEATPIQEQTIPLGLKGEDVIGQAQTGTGKTAAFGIPMIEQ 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K I L++ PTRELA Q++ E I + GI L + GG + +
Sbjct: 64 IEKKQRK--------IQGLVVAPTRELAIQVSEE-IHRIGKFKGIRSLPIYGGQQMQRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+VATPGRLLDH+ K+ + + +K +VLDEAD +L++GF D+ I+
Sbjct: 115 RSLKEGP-HIVVATPGRLLDHMRRKT---INISDVKTIVLDEADEMLNMGFIDDIREILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMPKE+
Sbjct: 171 MIPHERQTLLFSATMPKEI 189
>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118477863|ref|YP_895014.1| DEAD/DEAH box helicase [Bacillus thuringiensis str. Al Hakam]
gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
gi|376266386|ref|YP_005119098.1| ATP-dependent RNA helicase [Bacillus cereus F837/76]
gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
thuringiensis str. Al Hakam]
gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
W]
gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB108]
gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
03BB102]
gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|364512186|gb|AEW55585.1| ATP-dependent RNA helicase [Bacillus cereus F837/76]
Length = 450
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
Length = 454
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKINPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ PL +K++ GY T +Q + EG+D + A+TGTGK+ AF LP +
Sbjct: 17 FADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPILHR 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ +SS + P+ LIL PTRELA Q+ E + H + + GG +
Sbjct: 77 LMPLANSSASPARHPVRALILTPTRELADQV-YENVKRYSLHTPLRSAVVFGGVDIGPQK 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L C++LVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D+E I+
Sbjct: 136 EALRQG-CEVLVATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLERIIR 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ LLFSAT E+
Sbjct: 192 LLPPQRQGLLFSATFSNEI 210
>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
Length = 467
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P T+ LT GY++MT +Q A+L L G D + +AKTG+GK+ AF L A+ A
Sbjct: 11 FSQLSLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSL-ALLA 69
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L + + + ++LCPTRELA Q+ E L + + I VLTL GGT +
Sbjct: 70 RLDVRNFA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQT 122
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
LE I+V TPGR++DH+E S + L L LVLDEAD +LD+GF D+ +V
Sbjct: 123 ASLEHG-AHIVVGTPGRIMDHLERGS---LPLQSLNTLVLDEADRMLDMGFFDDIATVVK 178
Query: 561 CLPRRRQSLLFSATMPKELV 580
P+ RQ+LLFSAT P+ +V
Sbjct: 179 QCPKERQTLLFSATYPEGIV 198
>gi|423459512|ref|ZP_17436309.1| hypothetical protein IEI_02652 [Bacillus cereus BAG5X2-1]
gi|401143433|gb|EJQ50968.1| hypothetical protein IEI_02652 [Bacillus cereus BAG5X2-1]
Length = 446
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+
Sbjct: 1 MVNLKNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|340960269|gb|EGS21450.1| ATP-dependent RNA helicase, mitochondrial-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 632
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 144/246 (58%), Gaps = 19/246 (7%)
Query: 367 KEKREEEPILSQKRFDEC---GISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVK 422
+E E P L RF++ G++ I+++T Y MT VQ T++ L GKD V +
Sbjct: 63 RESNPEPPTLI-TRFEDLHTLGVNERLIQSITKGMRYETMTEVQSMTINPALRGKDVVAQ 121
Query: 423 AKTGTGKSIAFLLPAIEAVLKAT-----SSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
AKTGTGK++AFL+P I+ +++A S I +++ PTRELA QI EA
Sbjct: 122 AKTGTGKTLAFLVPVIQRIIEAQPELERPSRKRATADDIRAIVISPTRELAEQIGEEARK 181
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSVRLMGLK 536
L +N G+ V T VGGT+ R+ ++ C +L+ATPGRL D + + SG++ L
Sbjct: 182 LARN-TGVRVQTAVGGTQKNAMLRKTRAEGCHLLIATPGRLNDLLSDPTSGIAA--PRLA 238
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELVLKREHTYIDTVG 592
LVLDEAD +L++GF+ ++E+IV LP R RQ+LL+SAT+PK V+ TYI+
Sbjct: 239 ALVLDEADRMLEVGFKAELESIVSLLPDRNTVPRQTLLYSATLPKN-VVNIARTYINPAN 297
Query: 593 LGSVET 598
V+T
Sbjct: 298 FEFVQT 303
>gi|392947743|ref|ZP_10313371.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|334881219|emb|CCB82055.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
gi|339637663|emb|CCC16621.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
gi|392437023|gb|EIW14919.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 526
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ AGY + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFTELGLSDSLLKAVQRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I L++ PTRELA Q E L K+ V + GG +
Sbjct: 62 RLDFNNHN--------IQALVVSPTRELAIQTQEEIFRLGKDERA-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ +P Q++V TPGRLLDHI + V+L +KMLVLDEAD +L++GF +D+E+I+
Sbjct: 113 IRNLKQNP-QVIVGTPGRLLDHIRRGT---VKLDHVKMLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P RQ++LFSATMP E+
Sbjct: 169 KQVPDERQTMLFSATMPPEI 188
>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPASKQTMLFSATMPKDI 193
>gi|423593605|ref|ZP_17569636.1| hypothetical protein IIG_02473 [Bacillus cereus VD048]
gi|401226627|gb|EJR33166.1| hypothetical protein IIG_02473 [Bacillus cereus VD048]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|423454088|ref|ZP_17430941.1| hypothetical protein IEE_02832 [Bacillus cereus BAG5X1-1]
gi|401137058|gb|EJQ44642.1| hypothetical protein IEE_02832 [Bacillus cereus BAG5X1-1]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
CI]
Length = 454
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase [Ochrobactrum anthropi ATCC 49188]
gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
49188]
Length = 498
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 123/218 (56%), Gaps = 13/218 (5%)
Query: 362 GNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVV 421
G + KR P+ + F E G+SP + A+ AAGY T +Q + LE KD +
Sbjct: 2 GGNHFQTKRAAPPLTT---FAELGLSPKVLAAVEAAGYSAPTPIQAGAIPPALERKDVLG 58
Query: 422 KAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481
A+TGTGK+ +F+LP + + K + + LIL PTRELA+Q+ N
Sbjct: 59 IAQTGTGKTASFVLPMLTLLEKGRARARMP-----RTLILEPTRELAAQVEENFTKYGVN 113
Query: 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541
H + V L+GG F +R+LE +L+ATPGRLLDH E L L G+++LV+D
Sbjct: 114 HR-LNVALLIGGVSFDEQERKLERG-ADVLIATPGRLLDHFERGKLL---LTGVEILVID 168
Query: 542 EADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
EAD +LD+GF D+E I +P RQ+L FSATMP E+
Sbjct: 169 EADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 206
>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + T SS Q LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKI--DTESSDVQ------ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
EO147]
gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
C6786]
Length = 509
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 125/218 (57%), Gaps = 19/218 (8%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
EP + F G+SP + AL AAGY + T VQ+ + A + G+D +V + TG+GK+ A
Sbjct: 34 EPASDEPTFASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAA 93
Query: 433 FLLPAIE--AVLKATSSST-------------TQLVPPIYVLILCPTRELASQIAAEAIA 477
F+LPAIE A L+ T + Q V +L+L PTRELA Q+ A
Sbjct: 94 FMLPAIERFAQLQKTQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAAST 153
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537
K+ + ++++GG + L +P +ILVATPGRLLDH+E + L LKM
Sbjct: 154 YGKHLRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKM 209
Query: 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
LVLDEAD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 210 LVLDEADRMLDMGFIDDIETIVAATPATRQTMLFSATL 247
>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 457
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 17/222 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ + P +KA+ AGY T +Q+ + + G D + A+TGTGK+ AF+LPA+
Sbjct: 3 FEKLNLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPALHT 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ AT + P VL+L PTRELA Q++ A K I V++++GG + + Q
Sbjct: 63 L--ATPAQIRSRGP--RVLVLTPTRELALQVSEAAKKYGKYLPRINVVSILGGMPYPL-Q 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L S P ILVATPGRL+DHI+ + L+MLVLDEAD +LD+GF +DVE I
Sbjct: 118 NKLLSQPVDILVATPGRLIDHIQRGR---IDFKRLQMLVLDEADRMLDMGFIEDVETIAA 174
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKV 602
P RQ+LLFSAT+ ID V ++TP ++
Sbjct: 175 ATPATRQTLLFSATLDNA---------IDRVAAKLLKTPQRI 207
>gi|423510423|ref|ZP_17486954.1| hypothetical protein IG3_01920 [Bacillus cereus HuA2-1]
gi|402454013|gb|EJV85807.1| hypothetical protein IG3_01920 [Bacillus cereus HuA2-1]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|423517202|ref|ZP_17493683.1| hypothetical protein IG7_02272 [Bacillus cereus HuA2-4]
gi|423668136|ref|ZP_17643165.1| hypothetical protein IKO_01833 [Bacillus cereus VDM034]
gi|423675737|ref|ZP_17650676.1| hypothetical protein IKS_03280 [Bacillus cereus VDM062]
gi|401163474|gb|EJQ70819.1| hypothetical protein IG7_02272 [Bacillus cereus HuA2-4]
gi|401302127|gb|EJS07707.1| hypothetical protein IKO_01833 [Bacillus cereus VDM034]
gi|401308761|gb|EJS14156.1| hypothetical protein IKS_03280 [Bacillus cereus VDM062]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|395844018|ref|XP_003794763.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 1
[Otolemur garnettii]
Length = 869
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSRKTLKGLQEAQYRLVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKQE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETVSFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LPR+RQ+LLFSAT K
Sbjct: 241 ENLPRKRQTLLFSATQTK 258
>gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase [Bacillus weihenstephanensis KBAB4]
gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
KBAB4]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|451812523|ref|YP_007448977.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778425|gb|AGF49373.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 422
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 121/195 (62%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ GI+ AL AG+I T VQEAT+ L GKD +V A+TG+GK+ AF+LP ++
Sbjct: 3 FEKIGINSNIFSALKTAGFISPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPVLQM 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + S+ + P VL+L PTRELA QI A N + + T+VGG ++ +Q
Sbjct: 63 LSQKPKSNN---INP-QVLVLTPTRELALQITKATAAYGINMPWLRIATIVGGMPYR-NQ 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ S ILVATPGRL+D + + V L ++ LVLDEAD +LD+GF +D+E IV
Sbjct: 118 IKALSKRVDILVATPGRLIDQMRSN---KVSLANIQTLVLDEADRMLDMGFIEDIETIVK 174
Query: 561 CLPRRRQSLLFSATM 575
P+ RQ++LFSAT+
Sbjct: 175 NTPKDRQTMLFSATI 189
>gi|423419525|ref|ZP_17396614.1| hypothetical protein IE3_02997 [Bacillus cereus BAG3X2-1]
gi|401106131|gb|EJQ14098.1| hypothetical protein IE3_02997 [Bacillus cereus BAG3X2-1]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKINPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
gi|423487608|ref|ZP_17464290.1| hypothetical protein IEU_02231 [Bacillus cereus BtB2-4]
gi|423493331|ref|ZP_17469975.1| hypothetical protein IEW_02229 [Bacillus cereus CER057]
gi|423499877|ref|ZP_17476494.1| hypothetical protein IEY_03104 [Bacillus cereus CER074]
gi|423600206|ref|ZP_17576206.1| hypothetical protein III_03008 [Bacillus cereus VD078]
gi|423662694|ref|ZP_17637863.1| hypothetical protein IKM_03091 [Bacillus cereus VDM022]
gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
gi|401153002|gb|EJQ60429.1| hypothetical protein IEW_02229 [Bacillus cereus CER057]
gi|401157135|gb|EJQ64537.1| hypothetical protein IEY_03104 [Bacillus cereus CER074]
gi|401233732|gb|EJR40220.1| hypothetical protein III_03008 [Bacillus cereus VD078]
gi|401297351|gb|EJS02962.1| hypothetical protein IKM_03091 [Bacillus cereus VDM022]
gi|402435673|gb|EJV67706.1| hypothetical protein IEU_02231 [Bacillus cereus BtB2-4]
Length = 450
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|423402905|ref|ZP_17380078.1| hypothetical protein ICW_03303 [Bacillus cereus BAG2X1-2]
gi|423476466|ref|ZP_17453181.1| hypothetical protein IEO_01924 [Bacillus cereus BAG6X1-1]
gi|401650038|gb|EJS67613.1| hypothetical protein ICW_03303 [Bacillus cereus BAG2X1-2]
gi|402433362|gb|EJV65414.1| hypothetical protein IEO_01924 [Bacillus cereus BAG6X1-1]
Length = 446
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 473
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 8/230 (3%)
Query: 361 NGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAV 420
G G++ + P + F + G+ P KA+ GY T +Q ++ L G D +
Sbjct: 12 TGAGDQATPSDNTP--ATITFADFGLDPKIQKAVAEQGYSIPTPIQAQSIPHVLAGSDLM 69
Query: 421 VKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480
A+TGTGK+ AF+LP I+ +L+ S+S + PI L+L PTRELA Q+A A + K
Sbjct: 70 GAAQTGTGKTAAFVLPIIQQILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSK 129
Query: 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540
+ D + + GG K +Q + + +IL+ATPGRLLDHI +K L +++LVL
Sbjct: 130 HTD-LRAAVVYGGVDMK-EQVAILRNGVEILIATPGRLLDHIGSKVA---NLSQVEILVL 184
Query: 541 DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDT 590
DEAD +LD+GF D++ I+D +P +RQ+LLFSAT E + K +Y+ T
Sbjct: 185 DEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPE-IKKLAQSYLRT 233
>gi|42781571|ref|NP_978818.1| DEAD/DEAH box helicase [Bacillus cereus ATCC 10987]
gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
ATCC 10987]
Length = 447
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L D I VL + GG
Sbjct: 62 EKIDPECSD--------VQALIVAPTRELALQITNEIKKMLVQRDDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 131/215 (60%), Gaps = 17/215 (7%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ + +F+E +S +KA+ GY + T +Q T+ L+GKD + +A+TGTGK+ AF +
Sbjct: 1 MEKIKFEELNLSKEILKAIEELGYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E + S T Q LILCPTRELA Q++ E L K IG+L + GG
Sbjct: 61 PTLERI--DPSKKTIQ------ALILCPTRELAIQVSEELKKLSKYKKAIGILPIYGGQS 112
Query: 496 FKVDQRRLES--DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
+R+++S I++ TPGR +DHIE + ++L +K+ +LDEAD +L++GF +
Sbjct: 113 I---ERQIQSLKKGVNIIIGTPGRCIDHIERGT---LKLEDIKLFILDEADEMLNMGFIE 166
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELVLKREHTYI 588
D+E I+D P+ +Q+LLFSATMP + +LK Y+
Sbjct: 167 DIEFILDKTPKDKQTLLFSATMP-DPILKLTKKYL 200
>gi|390597661|gb|EIN07060.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 468
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 127/217 (58%), Gaps = 13/217 (5%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY M+ VQ ATL L+GKD + +AKTGTGK++AFL+PAI+ +L + S I
Sbjct: 9 GYTVMSPVQAATLEPILQGKDCLAQAKTGTGKTLAFLIPAIQTLLASPPSQPRS----IR 64
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
+++ PTRELA QI+ EA L K I + T GGT D R + + P +LVATPGR
Sbjct: 65 AVVISPTRELARQISKEAEVLTKGIPEIRIHTSTGGTNVNTDSRVILTRP-DLLVATPGR 123
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL-PRRRQSLLFSATMP 576
L DH+ + L+ L LVLDEAD+L+D GF ++ I+ L P +RQ+LLFSAT+P
Sbjct: 124 LKDHLSDPQRLAC-FGKLDFLVLDEADNLVDQGFYPEIRAIMQTLPPSQRQTLLFSATIP 182
Query: 577 KEL------VLKREHTYIDTVGLGSVETPVKVSKYNI 607
E+ +L + +I T+ V T +V + I
Sbjct: 183 PEVKTIASTILSPGYVHISTISPDDVSTHERVPQTVI 219
>gi|421893868|ref|ZP_16324361.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
gi|385273353|emb|CCG89733.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
Length = 526
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 119/197 (60%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ GY + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I +I+ PTRELA+Q AE L K + V + GG+ +
Sbjct: 62 NVDLDN--------PNIQAIIISPTRELAAQTQAEIFKLGK-YKKAKVQVVYGGSDIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+S P QI+V TPGRLLDHI K+ +RL +K LVLDEAD +LD+GF D+E+I+
Sbjct: 113 INALKSHP-QIVVGTPGRLLDHIGRKT---IRLDHVKTLVLDEADDMLDMGFLPDIEHII 168
Query: 560 DCLPRRRQSLLFSATMP 576
+ P RQ+LLFSATMP
Sbjct: 169 EQTPSERQTLLFSATMP 185
>gi|350545971|ref|ZP_08915408.1| ATP-dependent RNA helicase NGO0650 [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526259|emb|CCD40935.1| ATP-dependent RNA helicase NGO0650 [Candidatus Burkholderia kirkii
UZHbot1]
Length = 544
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 119/211 (56%), Gaps = 20/211 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S + ALTAAGY T VQ+ + A L G+D +V + TG+GK+ AF+LPAIE
Sbjct: 106 FESLGLSAEIVSALTAAGYAAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIEK 165
Query: 441 VLKATSSSTTQLVPP----------------IYVLILCPTRELASQIAAEAIALLKNHDG 484
+ QL P +L+L PTRELA Q++ A K+
Sbjct: 166 FAQLQKQEAQQLRAPRDPNAPRGRRPQPIARPRLLVLTPTRELAMQVSTAATTYGKHLHR 225
Query: 485 IGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544
+ ++++GG + L +P +ILVATPGRL+DH+E + L L M VLDEAD
Sbjct: 226 LRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLIDHLERS---RIDLSELNMFVLDEAD 281
Query: 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
+LD+GF +D+E IVD P Q+LLFSAT+
Sbjct: 282 RMLDMGFIEDIETIVDATPETHQTLLFSATI 312
>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase [Lactobacillus reuteri DSM 20016]
gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
MM2-3]
gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
CF48-3A]
gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
gi|338203780|ref|YP_004649925.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
20016]
gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
MM2-3]
gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
CF48-3A]
gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
gi|336449020|gb|AEI57635.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
Length = 498
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 121/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +GY + T +QE T+ LEGKD + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V T L I +I+ PTRELA Q E L K+ + V + GG +
Sbjct: 62 NV------DTENL--NIQAIIISPTRELAIQTQEELYRLGKD-KHVRVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ P QILV TPGRL DHI +V+L +K LVLDEAD +L++GF +D+E+I+
Sbjct: 113 IKSLKQHP-QILVGTPGRLRDHINRH---TVKLDHIKTLVLDEADEMLNMGFLEDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 169 KETPDDRQTLLFSATMPPEI 188
>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
25745]
gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
25745]
Length = 526
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 119/197 (60%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ GY + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I +I+ PTRELA+Q AE L K + V + GG+ +
Sbjct: 62 NVDLDN--------PNIQAIIISPTRELAAQTQAEIFKLGK-YKKAKVQVVYGGSDIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+S P QI+V TPGRLLDHI K+ +RL +K LVLDEAD +LD+GF D+E+I+
Sbjct: 113 INALKSHP-QIVVGTPGRLLDHIGRKT---IRLDHVKTLVLDEADDMLDMGFLPDIEHII 168
Query: 560 DCLPRRRQSLLFSATMP 576
+ P RQ+LLFSATMP
Sbjct: 169 EQTPSERQTLLFSATMP 185
>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc argentinum KCTC 3773]
Length = 518
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 119/198 (60%), Gaps = 15/198 (7%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+T GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKV 498
+ + I LI+ PTRELA Q A E L HD + V + GG +
Sbjct: 62 NIDLDNKN--------IQALIVSPTRELAIQTADELKKL--GHDKHVDVQVVFGGADIRR 111
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF D+E I
Sbjct: 112 QIQNLKSHP-QILVGTPGRLLDHINRK---TVKIDQVKTLVLDEADEMLNMGFLDDIEAI 167
Query: 559 VDCLPRRRQSLLFSATMP 576
+ P RQ+LLFSATMP
Sbjct: 168 IKNTPADRQTLLFSATMP 185
>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|444365702|ref|ZP_21165823.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|443605756|gb|ELT73582.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 514
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIET 97
Query: 441 VLKATSSSTTQLVPP------------------IYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q P +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IVD P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIEDIETIVDATPDTRQTMLFSATL 246
>gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118]
gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 473
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 119/207 (57%), Gaps = 18/207 (8%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P S KRF+ ++P T+ L GY++MT +Q A+L A L GKD + +A+TG+GK+ AF
Sbjct: 13 PSSSNKRFESLALNPATLANLQQLGYLEMTPIQAASLPAALAGKDLIAQAETGSGKTAAF 72
Query: 434 LLPAIEAVLKATSSSTTQLVP---PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
L +E +L P + L+LCPTRELA Q+ E L + D I V+TL
Sbjct: 73 ALALLE-----------RLNPRRFAVQALVLCPTRELADQVTIEIRRLARATDNIKVVTL 121
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
GG + + LE I+V TPGR++DH+ + + L L LVLDEAD +LD+G
Sbjct: 122 CGGVALRGQRASLEQG-AHIVVGTPGRVMDHLARE---YLNLEALNTLVLDEADRMLDMG 177
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPK 577
F D+ + P+ RQ+LLFSAT P+
Sbjct: 178 FFDDMATVAKQCPKERQTLLFSATYPE 204
>gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
Length = 527
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 124/205 (60%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ + RF++ G+ P +KA+ G+ + + +Q + GKD + +A+TGTGK+ AF +
Sbjct: 1 MEEARFEDLGLCPEIVKAVKKMGFEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E + + ++LCPTRELA Q+A E L K GI VL + GG
Sbjct: 61 PLLEKIEPKNKK--------LQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQE 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
R L+S Q+++ TPGR++DH+ K+ +++ + +VLDEAD +L++GFR+D+
Sbjct: 113 IVTQIRSLKSG-TQLIIGTPGRVMDHMRRKT---IKMDEVHTIVLDEADEMLNMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I++ +P RQ++LFSATMP+ ++
Sbjct: 169 ETILEGVPEERQTVLFSATMPQAIL 193
>gi|423391251|ref|ZP_17368477.1| hypothetical protein ICG_03099 [Bacillus cereus BAG1X1-3]
gi|401637084|gb|EJS54837.1| hypothetical protein ICG_03099 [Bacillus cereus BAG1X1-3]
Length = 450
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 121/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ + P +A+ GY MT +Q + L+G+D + A+TGTGK+ AF LP ++
Sbjct: 25 FNTLPLDPKLQRAVADQGYASMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 84
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK ++S + P+ L+L PTRELA Q+AA A K H + + GG K
Sbjct: 85 MLKHENASMSPARHPVRALVLAPTRELADQVAANVKAYAK-HTNLRSTVVFGGIDMKPQT 143
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L++ ++L+ATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 144 AELKAG-VEVLIATPGRLLDHIEAKNCV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 199
Query: 561 CLPRRRQSLLFSATMPKEL 579
LPR+RQ+LLFSAT E+
Sbjct: 200 YLPRQRQTLLFSATFSPEI 218
>gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 528
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 123/201 (61%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F++ GI P KA+ G+ + + +Q + LEGKD + +A+TGTGK+ AF +P ++
Sbjct: 5 KFEQLGICPEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQ 64
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V + ++LCPTRELA Q+A E L K GI VL + GG V
Sbjct: 65 KVNPKNKK--------LQGIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEI-VK 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q R + QI++ TPGR++DH+ K+ +++ + +VLDEAD +L++GFR+D+E I+
Sbjct: 116 QIRSLKNGTQIIIGTPGRVMDHMRRKT---IKMEQVHTVVLDEADEMLNMGFREDIETIL 172
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ++LFSATMPK ++
Sbjct: 173 EGVPEERQTVLFSATMPKAIM 193
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 6/227 (2%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
E + + RFD + P ++A+ AGY+ MT +Q + L+G+D + A+TGTGK+ A
Sbjct: 9 ELVAAPARFDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAA 68
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
F LP ++ +L+ ++S + P+ L+L PTRELA Q+ A + H + V + G
Sbjct: 69 FSLPLLQKMLRHENASASPARHPVRALVLAPTRELADQV-ANNVKTYARHSQLRVTCVFG 127
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G L+ ++L+ATPGRLLDHI+ K + +L ++ +VLDEAD +LD+GF
Sbjct: 128 GIDMAPQTAELKRG-VEVLIATPGRLLDHIQAK---NCQLNQVEYVVLDEADRMLDIGFL 183
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETP 599
D++ I+ LP+ RQ+LLFSAT E + K +Y+ L V P
Sbjct: 184 PDLQRILSYLPKTRQTLLFSATFSPE-IKKLAQSYLQDPLLVEVARP 229
>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 512
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 126/221 (57%), Gaps = 22/221 (9%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
EP + F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ A
Sbjct: 30 EPASDEPSFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAA 89
Query: 433 FLLPAIE--AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAE 474
F+LPAIE A L+ T + Q V +L+L PTRELA Q+
Sbjct: 90 FMLPAIERFAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTA 149
Query: 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534
A K+ + ++++GG + L +P +ILVATPGRLLDH+E + L
Sbjct: 150 ASTYGKHLKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSE 205
Query: 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
LKMLVLDEAD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 206 LKMLVLDEADRMLDMGFIDDIETIVAATPASRQTMLFSATL 246
>gi|423365773|ref|ZP_17343206.1| hypothetical protein IC3_00875 [Bacillus cereus VD142]
gi|401089504|gb|EJP97670.1| hypothetical protein IC3_00875 [Bacillus cereus VD142]
Length = 446
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 467
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 137/241 (56%), Gaps = 26/241 (10%)
Query: 370 REEEPILSQKR--------FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVV 421
++ PI+S R F++ + T++++ AGY+ T +Q T+ L+GKD +
Sbjct: 16 KDHSPIISNPRNDNNNTLTFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMA 75
Query: 422 KAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481
A+TGTGK+ AF+LP IE + Q ++ LIL PTRELA+Q+ A A K
Sbjct: 76 SAQTGTGKTAAFILPIIELLRVEDKPKRLQ----VHSLILTPTRELAAQVEANAKGYTK- 130
Query: 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541
+ GI + GG + +RL+ ILVATPGRLLD I K+ +R LK+LVLD
Sbjct: 131 YLGIRSDAVFGGVSIRPQVKRLQGG-VDILVATPGRLLDLINQKT---IRFDNLKILVLD 186
Query: 542 EADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVK 601
EAD +LD+GF +D++ +++ LP++RQ+++FSAT I + LG + PV+
Sbjct: 187 EADRMLDMGFIRDIKKVIEFLPKKRQNMMFSATFSAP---------IKKLALGLLNDPVE 237
Query: 602 V 602
+
Sbjct: 238 I 238
>gi|218897409|ref|YP_002445820.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402560355|ref|YP_006603079.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-771]
gi|423360566|ref|ZP_17338069.1| hypothetical protein IC1_02546 [Bacillus cereus VD022]
gi|434375382|ref|YP_006610026.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9842]
gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
gi|401081562|gb|EJP89836.1| hypothetical protein IC1_02546 [Bacillus cereus VD022]
gi|401789007|gb|AFQ15046.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-771]
gi|401873939|gb|AFQ26106.1| DEAD/DEAH box helicase [Bacillus thuringiensis HD-789]
Length = 450
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKINPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|334137246|ref|ZP_08510689.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
gi|333605235|gb|EGL16606.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
Length = 535
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + IKA+T G+ + T +QE T+ +EG D + +A+TGTGK+ AF +P +
Sbjct: 2 KNFSEFDLDAKVIKAITEMGFEESTPIQEKTIPLAIEGHDLIGQAQTGTGKTAAFGIPLV 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ + I LI+CPTRELA Q+A E ++ L GI L + GG
Sbjct: 62 SKIEPSEDK--------IVALIMCPTRELAIQVAEE-VSKLGRFKGIRSLPIYGGQDIGK 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ ++L +K +VLDEAD +LD+GF D+++I
Sbjct: 113 QIRALKKRP-QIIIGTPGRLLDHINRKT---IKLEDVKTVVLDEADEMLDMGFMDDIQSI 168
Query: 559 VDCLPRRRQSLLFSATMP 576
+ +P R ++LFSATMP
Sbjct: 169 LSLVPAERHTMLFSATMP 186
>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 516
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 123/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97
Query: 440 -AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIDDIETIVAATPESRQTMLFSATL 246
>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
Length = 454
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+
Sbjct: 1 MVNVKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLQGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|336452449|ref|YP_004606915.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
gi|335332476|emb|CCB79203.1| cold-shock DEAD-box protein A [Helicobacter bizzozeronii CIII-1]
Length = 470
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 120/201 (59%), Gaps = 14/201 (6%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ + F + G++ +K++ G+ Q + +QE + A LEGKD + +A+TGTGK+ AF L
Sbjct: 16 IAPRSFKDLGLNARILKSIAEVGFTQPSPIQEKAIPAVLEGKDVIAQAQTGTGKTAAFAL 75
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P I+ + S I L++ PTRELA QI+ E L KN + + GG
Sbjct: 76 PIIQNLKNDKS---------IEALVITPTRELAMQISDEVFKLGKN-SRTRTICVYGGQS 125
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
K LE +P Q+++ATPGRLLDH++NK ++ K++VLDE+D +LD+GF D+
Sbjct: 126 IKKQCELLERNP-QVMIATPGRLLDHLKNK---RLKNFSPKVVVLDESDEMLDMGFLDDI 181
Query: 556 ENIVDCLPRRRQSLLFSATMP 576
E I D LP Q LLFSATMP
Sbjct: 182 EEIFDYLPSEAQILLFSATMP 202
>gi|240279031|gb|EER42537.1| ATP-dependent RNA helicase mss116 [Ajellomyces capsulatus H143]
Length = 316
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 138/246 (56%), Gaps = 26/246 (10%)
Query: 369 KREEEPILSQKRFDECG----ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKA 423
K EEP +F E +S I+ LT I MT VQ T++A L G D + +A
Sbjct: 66 KEVEEPPAELTQFSELASNGLVSDNIIRVLTNKMNITTMTDVQRMTINATLNGSDVLAQA 125
Query: 424 KTGTGKSIAFLLPAIEAVLKATS-------SSTTQLVPPIYVLILCPTRELASQIAAEAI 476
KTGTGK+++FLLP I+ +LK S I +I+ PTRELA QIA EA
Sbjct: 126 KTGTGKTLSFLLPVIQNILKDQHLAQRPRFSRNQTDASDIRAIIISPTRELAEQIAVEAR 185
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIEN-KSGLSVRLMGL 535
L+ N I V T VGGT+ + R++ D C ILV TPGRL+D + SG++ L
Sbjct: 186 KLVSN-TSIIVQTAVGGTKKREGLMRIQRDGCHILVGTPGRLIDIFSDPNSGVAAP--KL 242
Query: 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREH 585
LVLDEAD LLD+GF D++ + LP R RQ+L+FSAT+P+E++ +KR+
Sbjct: 243 SALVLDEADRLLDIGFAPDIQELQTYLPHRRDVDRQTLMFSATVPREVMSMVRQTMKRDF 302
Query: 586 TYIDTV 591
++ TV
Sbjct: 303 AFVKTV 308
>gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 451
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|423372414|ref|ZP_17349754.1| hypothetical protein IC5_01470 [Bacillus cereus AND1407]
gi|401098851|gb|EJQ06861.1| hypothetical protein IC5_01470 [Bacillus cereus AND1407]
Length = 454
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+
Sbjct: 1 MVNVKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPDSKQTMLFSATMPKDI 193
>gi|163859073|ref|YP_001633371.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 584
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 120/195 (61%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G++P + AL AAG+ T VQ A + L G D +V ++TG+GK+ AF+LPA+
Sbjct: 3 FETLGLAPTLLSALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPALNR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+ + +N G+ T+VGG +
Sbjct: 63 IAGQPGNKGVG----VQVLVLTPTRELALQVTEATGSYGRNLPGLRTATVVGGMPYGAQL 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 119 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 174
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 175 RLPQERQTLLFSATL 189
>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 512
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 126/221 (57%), Gaps = 22/221 (9%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
EP + F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ A
Sbjct: 30 EPASDEPSFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAA 89
Query: 433 FLLPAIE--AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAE 474
F+LPAIE A L+ T + Q V +L+L PTRELA Q+
Sbjct: 90 FMLPAIERFAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTA 149
Query: 475 AIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMG 534
A K+ + ++++GG + L +P +ILVATPGRLLDH+E + L
Sbjct: 150 ASTYGKHLKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSE 205
Query: 535 LKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
LKMLVLDEAD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 206 LKMLVLDEADRMLDMGFIDDIETIVAATPASRQTMLFSATL 246
>gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
Length = 454
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+
Sbjct: 1 MVNLKNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 95 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 153
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 154 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 210 LLPKERQTLLFSATFSPE-IKKLASTYL 236
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 95 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 153
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 154 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 210 LLPKERQTLLFSATFSPE-IKKLASTYL 236
>gi|423605778|ref|ZP_17581671.1| hypothetical protein IIK_02359 [Bacillus cereus VD102]
gi|401243133|gb|EJR49504.1| hypothetical protein IIK_02359 [Bacillus cereus VD102]
Length = 454
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+
Sbjct: 1 MVNVKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLTTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 529
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 122/201 (60%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+E GI P KA+ G+ + + +Q + + GKD + +A+TGTGK+ AF +P +E
Sbjct: 5 RFEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLE 64
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + ++LCPTRELA Q+A E L K GI VL + GG
Sbjct: 65 KIDPKNKK--------LQGIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+S Q+++ TPGR++DH+ K+ +++ + ++LDEAD +L++GFR+D+E I+
Sbjct: 117 IRSLKSG-TQLIIGTPGRVMDHMRRKT---IKMEQVHTVILDEADEMLNMGFREDIETIL 172
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ++LFSATMPK ++
Sbjct: 173 EGVPEERQTVLFSATMPKAIM 193
>gi|33594279|ref|NP_881923.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205577|ref|YP_005591316.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417408|ref|YP_006628115.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779578|emb|CCJ65116.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 477
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 5/201 (2%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ F + G+ PL +K + GY T +Q + +EG+D + A+TGTGK+ AF LP +
Sbjct: 17 RTFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPIL 76
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
++ ++S + P+ LIL PTRELA Q+ E++ H + + GG
Sbjct: 77 HRLMPLANTSASPARHPVRALILTPTRELADQV-YESVKRYSLHTPLRSAVVFGGVDIGP 135
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L C++LVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D+E I
Sbjct: 136 QKEALRRG-CEVLVATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLERI 191
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ LP +RQ LLFSAT E+
Sbjct: 192 IRLLPAQRQGLLFSATFSNEI 212
>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
Length = 454
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217959967|ref|YP_002338523.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus cereus
AH187]
gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
gi|375284481|ref|YP_005104920.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|423352280|ref|ZP_17329907.1| hypothetical protein IAU_00356 [Bacillus cereus IS075]
gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
H3081.97]
gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH187]
gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
gi|358353008|dbj|BAL18180.1| ATP-dependent RNA helicase [Bacillus cereus NC7401]
gi|401091974|gb|EJQ00110.1| hypothetical protein IAU_00356 [Bacillus cereus IS075]
Length = 454
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+
Sbjct: 1 MVNVKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLTTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 90 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 149
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 150 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 208
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 209 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 264
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 265 LLPKERQTLLFSATFSPE-IKKLASTYL 291
>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 516
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97
Query: 440 -AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIEDIETIVAATPESRQTMLFSATL 246
>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
Length = 451
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLTTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|348590699|ref|YP_004875161.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974603|gb|AEP37138.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 562
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 24/215 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI + +K+L + T VQ ++ LEGKD +V A+TG+GK+ AF+LP+I+
Sbjct: 6 FADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQR 65
Query: 441 VL-------------KATSS----STTQLVPPIY---VLILCPTRELASQIAAEAIALLK 480
+L KA SS + PP Y +L+L PTRELA Q+A +
Sbjct: 66 LLHELETRPQTEEISKAKSSRRKRGKSTANPPKYGVQILVLTPTRELAMQVADATKEFIY 125
Query: 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540
G+ + TLVGG + L S +I+VATPGRLLDHI K+G V+L LK+L+L
Sbjct: 126 GFKGVHIATLVGGMAYGPQINSL-SREVEIIVATPGRLLDHI--KAG-RVKLHNLKVLIL 181
Query: 541 DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
DEAD +LD+GF D++N+V P +Q+LLFSAT
Sbjct: 182 DEADRMLDMGFIHDIKNVVAETPDEKQTLLFSATF 216
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQS 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSGE-IKKLASTYL 214
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 117/198 (59%), Gaps = 13/198 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +QE + LEG+D + +A+TGTGK+ AF +P +
Sbjct: 2 KTFSEFGLEPKVLRAITEMGFEESTPIQEKAIPVALEGRDLIGQAQTGTGKTAAFGIPLV 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ I LI+CPTRELA Q+ AE I L GI L + GG
Sbjct: 62 NKIDVKEEK--------IVALIMCPTRELAIQV-AEEIEKLGRFKGIRSLPIYGGQDIVK 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L P QI++ TPGRLLDHI K +++L ++ ++LDEAD +LD+GF D+++I
Sbjct: 113 QIRGLRKKP-QIIIGTPGRLLDHINRK---TIKLDDVQTVILDEADEMLDMGFMDDIKSI 168
Query: 559 VDCLPRRRQSLLFSATMP 576
+ +P R ++LFSATMP
Sbjct: 169 LSLVPEERNTMLFSATMP 186
>gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 645
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 12/204 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ K F E G+S KA+ G+ Q + +Q + L+G+D V +++TG+GK+ AF +
Sbjct: 1 MTTKLFSELGLSAELQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAV 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIE V S + +LILCPTRELA Q++ E L GI L + GG
Sbjct: 61 PAIEKVDPQNRS--------VQILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQS 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++ L QI++ TPGR++DH+ + +RL +KM++LDEAD +LD+GFR+D+
Sbjct: 113 YERQFMGLRQG-AQIVIGTPGRVMDHMRRGT---LRLDQVKMVILDEADVMLDMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E I+ +P RQ++ FSATMP+ +
Sbjct: 169 EFILQAVPTERQTVFFSATMPRPI 192
>gi|436836087|ref|YP_007321303.1| DEAD/DEAH box helicase domain protein [Fibrella aestuarina BUZ 2]
gi|384067500|emb|CCH00710.1| DEAD/DEAH box helicase domain protein [Fibrella aestuarina BUZ 2]
Length = 658
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 12/204 (5%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+Q+ F + +SP + A+T G+ + +Q + L G+D + +A+TGTGK+ AF +P
Sbjct: 51 NQRTFADLNLSPDMLAAVTEMGFTTPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIP 110
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
A+E V + S + VLILCPTRELA Q+ E L + G+ + + GG
Sbjct: 111 ALELVDPSDRS--------VQVLILCPTRELALQVTEEMRKLSQFKRGVFIEAIYGGDSI 162
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ R L+ I+V TPGR++DH+E + ++L KM+VLDEAD +LD+GFR+D+E
Sbjct: 163 ERQIRSLKKG-VHIVVGTPGRVMDHMERNT---LKLDNAKMIVLDEADEMLDMGFREDIE 218
Query: 557 NIVDCLPRRRQSLLFSATMPKELV 580
+I++ P RQ++LFSATM K ++
Sbjct: 219 SILEDFPTERQTVLFSATMSKPIL 242
>gi|310794753|gb|EFQ30214.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 577
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 141/244 (57%), Gaps = 20/244 (8%)
Query: 380 RF-DECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLL 435
RF D G++P I+A+T + M VQ ATL+ L K D +V+AKTGTGK+IAFLL
Sbjct: 60 RFADMVGVNPALIQAITQDLKFDHMMPVQAATLTELLPPKRGDCLVQAKTGTGKTIAFLL 119
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAI+ ++ I +L++ PTRELA QIA EA ALL+ V +GGT
Sbjct: 120 PAIQTLITNNRGRGAG----ISLLVISPTRELAMQIAKEAQALLQRLQQYRVCIAIGGTN 175
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+++++ + C IL+ATPGRL+DH+ N+ + L LVLDEAD LLD+GF +
Sbjct: 176 KDREEKQILNG-CDILIATPGRLIDHLSNEY-IKESFRHLDTLVLDEADRLLDMGFMPAL 233
Query: 556 ENIVDCLPRR----RQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKY 605
++IV LP + RQ +LFSAT+ LVL + + +I T+ G T +V ++
Sbjct: 234 KDIVRALPDKAQTNRQGMLFSATIAPHVEQVAGLVLSKGYKFISTIPAGEANTHERVPQH 293
Query: 606 NIYV 609
I V
Sbjct: 294 LIKV 297
>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
Length = 451
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPDSKQTMLFSATMPKDI 190
>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
ATCC 25840]
Length = 482
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP I A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + +H + V L+GG F+ +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGIDHR-LNVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGR+LDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRMLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 514
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97
Query: 440 -AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIEDIETIVAATPESRQTMLFSATL 246
>gi|423624444|ref|ZP_17600222.1| hypothetical protein IK3_03042 [Bacillus cereus VD148]
gi|401256513|gb|EJR62722.1| hypothetical protein IK3_03042 [Bacillus cereus VD148]
Length = 458
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 529
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 122/201 (60%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+E GI P KA+ G+ + + +Q + + GKD + +A+TGTGK+ AF +P +E
Sbjct: 5 RFEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLE 64
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + ++LCPTRELA Q+A E L K GI VL + GG
Sbjct: 65 KIDPKNKK--------LQGIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+S Q+++ TPGR++DH+ K+ +++ + ++LDEAD +L++GFR+D+E I+
Sbjct: 117 IRSLKSG-TQLIIGTPGRVMDHMRRKT---IKMEQVHTVILDEADEMLNMGFREDIETIL 172
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ++LFSATMPK ++
Sbjct: 173 EGVPEERQTVLFSATMPKAIM 193
>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
gi|423379736|ref|ZP_17357020.1| hypothetical protein IC9_03089 [Bacillus cereus BAG1O-2]
gi|423442772|ref|ZP_17419678.1| hypothetical protein IEA_03102 [Bacillus cereus BAG4X2-1]
gi|423447032|ref|ZP_17423911.1| hypothetical protein IEC_01640 [Bacillus cereus BAG5O-1]
gi|423465872|ref|ZP_17442640.1| hypothetical protein IEK_03059 [Bacillus cereus BAG6O-1]
gi|423535187|ref|ZP_17511605.1| hypothetical protein IGI_03019 [Bacillus cereus HuB2-9]
gi|423539565|ref|ZP_17515956.1| hypothetical protein IGK_01657 [Bacillus cereus HuB4-10]
gi|423545787|ref|ZP_17522145.1| hypothetical protein IGO_02222 [Bacillus cereus HuB5-5]
gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
gi|401131028|gb|EJQ38682.1| hypothetical protein IEC_01640 [Bacillus cereus BAG5O-1]
gi|401175559|gb|EJQ82761.1| hypothetical protein IGK_01657 [Bacillus cereus HuB4-10]
gi|401182047|gb|EJQ89190.1| hypothetical protein IGO_02222 [Bacillus cereus HuB5-5]
gi|401632212|gb|EJS50000.1| hypothetical protein IC9_03089 [Bacillus cereus BAG1O-2]
gi|402414180|gb|EJV46516.1| hypothetical protein IEA_03102 [Bacillus cereus BAG4X2-1]
gi|402416794|gb|EJV49108.1| hypothetical protein IEK_03059 [Bacillus cereus BAG6O-1]
gi|402462303|gb|EJV94011.1| hypothetical protein IGI_03019 [Bacillus cereus HuB2-9]
Length = 450
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|427424031|ref|ZP_18914168.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-136]
gi|425699139|gb|EKU68758.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-136]
Length = 620
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 124/206 (60%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQETFVPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L ++ L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVIVATPGRLLDLVNRR---QLKLDKVEALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D RRQ+L+FSAT ++
Sbjct: 178 LEAISDLAGNRRQTLMFSATFADRII 203
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
+++ F+ G+ ++AL+ GY + T +Q + L GKD + A+TGTGK+ F LP
Sbjct: 52 AEQTFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 111
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+ +L S+S + P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 112 IIQRLLPMASASASPARHPVRALMLTPTRELADQV-YDNVARYAKHTDLRSTVVFGGVDM 170
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++
Sbjct: 171 NPQTDALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQ 226
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
I++ LP +RQ+LLFSAT E+
Sbjct: 227 RIINLLPAQRQTLLFSATFSPEI 249
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|413962917|ref|ZP_11402144.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928749|gb|EKS68037.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 548
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 121/211 (57%), Gaps = 20/211 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S + ALTAAGY T VQ+ + A L G+D +V + TG+GK+ AF+LPAIE
Sbjct: 40 FESLGLSADIVSALTAAGYESPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIEK 99
Query: 441 VLK----------------ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDG 484
+ A Q + +L+L PTRELA Q++ A K+
Sbjct: 100 FAQLQKLEAQQPRAPRDPNAARGRRPQPIARPKLLVLTPTRELAMQVSTAATTYGKHLRR 159
Query: 485 IGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEAD 544
+ ++++GG + L +P +ILVATPGRL+DH+E + L L MLVLDEAD
Sbjct: 160 LRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLIDHLERG---RIDLSELNMLVLDEAD 215
Query: 545 HLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
+LD+GF +D+E IVD P RQ+LLFSAT+
Sbjct: 216 RMLDMGFIEDIETIVDATPASRQTLLFSATI 246
>gi|375136185|ref|YP_004996835.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
Length = 620
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 124/206 (60%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQETFVPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L ++ L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVIVATPGRLLDLVNRR---QLKLDKVEALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D RRQ+L+FSAT ++
Sbjct: 178 LEAISDLAGNRRQTLMFSATFADRII 203
>gi|452126611|ref|ZP_21939194.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|452129988|ref|ZP_21942561.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
gi|451921706|gb|EMD71851.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|451922848|gb|EMD72992.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
Length = 552
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 120/195 (61%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G++P + AL AG+ + T VQ A + L G D +V ++TG+GK+ AF+LPA+
Sbjct: 3 FEDLGLAPSILSALQTAGFTEPTPVQAAAIPRALAGADLMVSSQTGSGKTAAFMLPALNR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V + + + +L+L PTRELA Q+A A N G+ T+VGG +
Sbjct: 63 VADMSPNKGVG----VQILVLTPTRELALQVADATAAYGANLPGLRATTVVGGVPYGAQL 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+ F +D+E I++
Sbjct: 119 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMSFIEDIETIIE 174
Query: 561 CLPRRRQSLLFSATM 575
LP RQ+LLFSAT+
Sbjct: 175 RLPESRQTLLFSATL 189
>gi|308160174|gb|EFO62674.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia P15]
Length = 547
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 146/266 (54%), Gaps = 20/266 (7%)
Query: 362 GNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVV 421
G G+ + + +E I+++ F E +SP ++A+ A G+ MTR+QEA++ L G++
Sbjct: 13 GGGDAENAKYQE-IMTETPFSETSLSPFLLEAVDAMGHKNMTRIQEASIPVILSGRNMTA 71
Query: 422 KAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481
KA TG+GKS+AFLLPAI+ + KA +L V++L PTRELA Q+ A L+
Sbjct: 72 KAHTGSGKSLAFLLPAIDLIHKA----NMKLHHGTGVIVLTPTRELALQLYNVATQLISA 127
Query: 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541
+ I V +GGT + + L +++ATPGRL DH+ N G L ML+LD
Sbjct: 128 TN-ITVGLAIGGTSRQKEANHL-CKGASVVIATPGRLCDHLNNTPGFKTD--KLFMLILD 183
Query: 542 EADHLLDLGFRKDVENIVDCL--PRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETP 599
EAD LL+ GF++++E I+ L P+ RQ FSATM + L+ H +D L + T
Sbjct: 184 EADMLLEYGFQQELEAILRMLPGPKLRQVCFFSATMSDK-CLEVPHMEVDKETLVRINTD 242
Query: 600 VKVSKYNIYVFVLVLSIKIQAFYIIC 625
VK S F + YIIC
Sbjct: 243 VKSSAATRAHF--------EQGYIIC 260
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 87 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 147 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 205
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 206 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 261
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 262 LLPKERQTLLFSATFSGE-IKKLASTYL 288
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 121/201 (60%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E I P +KA+ G+ M+ +Q + L GKD + +A+TGTGK+ AF +P ++
Sbjct: 5 KFTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPILQ 64
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V +L P ++LCPTRELA Q+A E L K + +L + GG
Sbjct: 65 KV-------DPKLKKP-QAIVLCPTRELAIQVADEIRKLAKYMSSVKILPIYGGQEISKQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L++ QI++ TPGR++DH+ K+ V+ + +VLDEAD +LD+GFR+D+E I+
Sbjct: 117 IRSLKAG-VQIIIGTPGRMMDHMRRKT---VKFDNIHTVVLDEADEMLDMGFREDIETIL 172
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ++LFSATMPK ++
Sbjct: 173 NGVPEERQTMLFSATMPKPIM 193
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|390569568|ref|ZP_10249853.1| ATP-dependent RNA helicase DbpA [Burkholderia terrae BS001]
gi|389938428|gb|EIN00272.1| ATP-dependent RNA helicase DbpA [Burkholderia terrae BS001]
Length = 463
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 117/197 (59%), Gaps = 12/197 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S + LT GY++MT +Q A+L L G+D + +AKTG+GK+ AF L A+ A
Sbjct: 8 FSELPLSEAVLANLTQLGYVEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSL-ALLA 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L A S + + ++LCPTRELA Q+ E L + + I VLTL GGT +
Sbjct: 67 RLDARSYA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQT 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
LE I+V TPGR++DH+E S + L GL LVLDEAD +LD+GF D+ +
Sbjct: 120 ASLEHG-AHIVVGTPGRIMDHLERGS---LSLDGLNTLVLDEADRMLDMGFFDDIAKVAR 175
Query: 561 CLPRRRQSLLFSATMPK 577
P+ RQ+LLFSAT P+
Sbjct: 176 QCPKERQTLLFSATYPE 192
>gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
Length = 452
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 120/195 (61%), Gaps = 5/195 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ + AL GY Q T +QEA + L G D + A+TGTGK+ AF+LP++E
Sbjct: 3 KFAELGLGAEIVAALEEQGYQQPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLE 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + ++S + + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 63 RLKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQRYIKNLP-LRHTVLFGGVNMDKQ 121
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+L S C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ NI+
Sbjct: 122 TAQLRSG-CEIVVATVGRLLDHVKQK---NIVLNKVEIVVLDEADRMLDMGFIDDIRNIM 177
Query: 560 DCLPRRRQSLLFSAT 574
LPR RQ+LLFSAT
Sbjct: 178 QMLPRPRQTLLFSAT 192
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQS 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSGE-IKKLASTYL 214
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423627497|ref|ZP_17603246.1| hypothetical protein IK5_00349 [Bacillus cereus VD154]
gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401271716|gb|EJR77723.1| hypothetical protein IK5_00349 [Bacillus cereus VD154]
Length = 458
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
Length = 458
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
Length = 454
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|410458653|ref|ZP_11312411.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
gi|409931248|gb|EKN68234.1| DEAD/DEAH box helicase [Bacillus azotoformans LMG 9581]
Length = 501
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 125/200 (62%), Gaps = 15/200 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E GIS +K++ A G+ + T +Q T+ L+GKD + +A+TGTGK+ AF +P IE
Sbjct: 4 FHELGISEKIMKSIQAMGFEEATPIQSETIPVSLQGKDVIGQAQTGTGKTAAFGIPMIEK 63
Query: 441 V-LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ +K T I +++ PTRELA Q+A E + + G+ L + GG
Sbjct: 64 IDIKNTF---------IQGIVVAPTRELAIQVAEE-LNRIGQFKGVKALPIYGGQDINRQ 113
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L++ P QI+V TPGRL+DH+ K+ +RL ++++VLDEAD +L++GF +D+E I+
Sbjct: 114 IRALKNRP-QIIVGTPGRLMDHMNRKT---IRLQNIQVVVLDEADEMLNMGFIEDIEAIL 169
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+ +
Sbjct: 170 KEVPEVRQTLLFSATMPEPI 189
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 125/209 (59%), Gaps = 8/209 (3%)
Query: 371 EEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
+ EP L RF++ G+S ++AL GY T +Q A + L+G+D + A+TGTGK+
Sbjct: 11 DSEPAL---RFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKT 67
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
F LP I+ +L S+S + P+ LIL PTRELA Q+ AE + H + +
Sbjct: 68 AGFSLPIIQLLLANASNSASPARHPVRALILTPTRELADQV-AENVKAYCRHTPLRSTVV 126
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
GG L + +I++ATPGRLLDH++ K ++ L ++LV+DEAD +LD+G
Sbjct: 127 FGGMDMAPQTAALRAG-VEIVIATPGRLLDHVQQK---TLNLSQTQILVMDEADRMLDMG 182
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEL 579
F D++ I++ LP++RQ+L+FSAT E+
Sbjct: 183 FLPDLQRIINLLPKKRQNLMFSATFSGEI 211
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP ++
Sbjct: 13 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|444361124|ref|ZP_21162267.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443598510|gb|ELT66861.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 471
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIET 97
Query: 441 VLKATSSSTTQLVPP------------------IYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q P +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IVD P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIEDIETIVDATPDTRQTMLFSATL 246
>gi|389870840|ref|YP_006378259.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388536089|gb|AFK61277.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 546
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 116/195 (59%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+SP+ + AL AG+ Q T VQ + LEGKD +V A+TG+GK+ AF+LP++
Sbjct: 3 FDSLGLSPILLAALNKAGFTQPTPVQTEAIPKALEGKDLIVSAQTGSGKTAAFMLPSLHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + VL+L PTRELA Q+A + D + + T+VGG +
Sbjct: 63 IAGMPGNKGVG----VQVLVLTPTRELALQVAEATKSYGVGIDDLRIATVVGGMPYGAQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ + V L + LVLDEAD +LD+GF +D+E+IV
Sbjct: 119 KAL-SRRVDVLVATPGRLIDHLNAR---RVNLSRVHTLVLDEADRMLDMGFIEDIESIVA 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ+L+FSAT
Sbjct: 175 QTPNDRQTLMFSATF 189
>gi|358060114|dbj|GAA94173.1| hypothetical protein E5Q_00821 [Mixia osmundae IAM 14324]
Length = 597
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 128/217 (58%), Gaps = 16/217 (7%)
Query: 403 TRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILC 462
T VQ TL L+GKD + +A TGTGK++ FL+P+++ +L+ + + +L++
Sbjct: 102 TEVQAQTLPVALKGKDILARALTGTGKTLGFLIPSLDRLLRNPTRPGQ-----VGILVMS 156
Query: 463 PTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHI 522
PTRELA+Q A A LL + +GV +GG + +RL S +LVATPGRL+DH+
Sbjct: 157 PTRELATQTADAAKQLLSSSPSLGVQLALGGGNVNAELKRLTSQRVDVLVATPGRLIDHL 216
Query: 523 ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKE 578
N +GL+ RL L+ VLDEAD LL GF++D++ IV LP R RQ+LLFSAT+ +
Sbjct: 217 AN-NGLAPRLNELQTFVLDEADQLLQQGFKQDIDRIVSFLPDRRTVPRQTLLFSATVSPQ 275
Query: 579 ------LVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
L L +H +I T+ + T +V + I V
Sbjct: 276 IQQVAKLTLLPDHDFISTIKESDLNTHERVKQTIIEV 312
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E G+ P ++A+ GY T +Q + L G+D + A+TGTGK+ +F LP ++
Sbjct: 3 FEELGLIPELLRAVADTGYTSPTPIQAQAIPVVLAGRDVMGGAQTGTGKTASFTLPLLQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ +SS + P+ LI+CPTRELA Q+ E++ H + + GG K
Sbjct: 63 LAPHANSSPSPAKHPVRALIVCPTRELAMQV-HESVKTYSKHLPLRSSCIYGGVDMKAQV 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +I+VATPGRLLDH+E K +V L ++MLVLDEAD +LD+GF D++ I+
Sbjct: 122 AELREG-REIVVATPGRLLDHVEGK---TVNLGQVQMLVLDEADRMLDMGFIPDIKRILA 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQSLLFSAT +E+
Sbjct: 178 LLPTQRQSLLFSATFSEEI 196
>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
gi|188021152|gb|EDU59192.1| DEAD/DEAH box helicase [Providencia stuartii ATCC 25827]
Length = 457
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 115/189 (60%), Gaps = 18/189 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTT 450
LT GY+ MT +QEA L A L GKD +AKTG+GK+ AF LL I+A +T S
Sbjct: 18 LTELGYVTMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAKQFSTQS--- 74
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
L+LCPTRELA Q+A+E L + I +LTL GG F V QR I
Sbjct: 75 --------LVLCPTRELADQVASELRRLARYMANIKILTLCGGVPFSV-QRDSLIHAAHI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRLLDH+ ++ V+L L+ LVLDEAD +LD+GF D++ ++ P RQ+LL
Sbjct: 126 IVATPGRLLDHLNKET---VKLDTLQTLVLDEADRMLDMGFADDIDEVISYAPISRQTLL 182
Query: 571 FSATMPKEL 579
FSAT P+ +
Sbjct: 183 FSATWPETI 191
>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 592
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 120/195 (61%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+ A G+ + T VQ A + + G D +V ++TG+GK+ AF+LPA+
Sbjct: 3 FADLGLSPTILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPALNR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V + + + +L+L PTRELA Q+A N G+ T+VGG +
Sbjct: 63 VAGQSPNKGVG----VQILVLTPTRELALQVADATATYGANLPGLRTTTVVGGVPYGAQL 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S +LVATPGRL+DH+ K+G V+L + LVLDEAD +LD+GF +D+E I++
Sbjct: 119 KAL-SRRVDVLVATPGRLIDHL--KAG-RVKLNTVHTLVLDEADRMLDMGFIEDIETIIE 174
Query: 561 CLPRRRQSLLFSATM 575
LP+ RQ+LLFSAT+
Sbjct: 175 RLPQSRQTLLFSATL 189
>gi|407704916|ref|YP_006828501.1| hypothetical protein MC28_1680 [Bacillus thuringiensis MC28]
gi|407382601|gb|AFU13102.1| ATP-dependent RNA helicase [Bacillus thuringiensis MC28]
Length = 450
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
Length = 498
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +GY + T +QE T+ L+G+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I LI+ PTRELA Q E L K+ + V + GG +
Sbjct: 62 HVDTDN--------PNIQALIISPTRELAIQTQEELYRLGKD-KHVRVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ P QILV TPGRL DHI +V+L ++ LVLDEAD +L++GF +D+E I+
Sbjct: 113 IKSLKHHP-QILVGTPGRLRDHINRH---TVKLGHIQTLVLDEADEMLNMGFLEDIEAII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 169 KETPAERQTLLFSATMPPEI 188
>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 536
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 123/209 (58%), Gaps = 16/209 (7%)
Query: 368 EKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT 427
K + E IL +F E G+S + A+T GY++ T +QE T+ L G+D + +A+TGT
Sbjct: 5 HKAQGEKIL---KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGT 61
Query: 428 GKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487
GK+ AF LP +E + + I LI+ PTRELA Q AE + L + V
Sbjct: 62 GKTAAFGLPILEHIDLNNKN--------IQALIVSPTRELAIQ-TAEELKKLGRDKRVDV 112
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ GG + + L+S P QILV TPGRLLDHI K +V++ ++ LVLDEAD +L
Sbjct: 113 QVVFGGADIRRQIQNLKSHP-QILVGTPGRLLDHINRK---TVKIDSVRTLVLDEADEML 168
Query: 548 DLGFRKDVENIVDCLPRRRQSLLFSATMP 576
++GF D+E I+ P RQ+LLFSATMP
Sbjct: 169 NMGFLDDIEAIISKTPAERQTLLFSATMP 197
>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
Length = 545
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 69 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 128
Query: 440 -AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 129 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 188
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 189 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 244
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV P RQ++LFSAT+
Sbjct: 245 ADRMLDMGFIEDIETIVAATPESRQTMLFSATL 277
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 117/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ +AL+ GY + T +QE + L+GKD + A+TGTGK+ F LP I+
Sbjct: 15 FDSFGLDARIQRALSEQGYTKPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPIIQR 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ L+L PTRELA Q+ + +A + + GG
Sbjct: 75 LLPLASASASPARHPVRALMLTPTRELADQV-YDNVARYARFTDLRSTVVFGGVDMNPQT 133
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 134 EALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQRIIN 189
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT E+
Sbjct: 190 LLPAQRQTLLFSATFSSEI 208
>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
23834]
gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
23834]
Length = 466
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 119/195 (61%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S AL GY Q T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FTNLGLSAEITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI A +KN + L GG
Sbjct: 65 LRRYATTSTSPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++RL ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVQQK---NIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQ 179
Query: 561 CLPRRRQSLLFSATM 575
LP++RQ+LLFSAT
Sbjct: 180 LLPKQRQTLLFSATF 194
>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
Length = 556
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 132/232 (56%), Gaps = 11/232 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E +SP +A+ GY + T +Q A + + G D + +++TGTGK+ AF +P IE
Sbjct: 2 KFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L+ T Q LIL PTRELA Q+ E K +GI + + GG +
Sbjct: 62 -MLEVTDRKRPQ------ALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+ I+V TPGR+LDHI ++ +R ++LVLDEAD +L++GFR+D+E ++
Sbjct: 115 ILELKKG-ADIVVGTPGRVLDHIRRRT---LRFDQCRVLVLDEADEMLNMGFREDIETVI 170
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFV 611
+ LP++RQ++LFSATMPK ++ + V + + +T + K +V
Sbjct: 171 EALPQQRQTVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYV 222
>gi|423413828|ref|ZP_17390948.1| hypothetical protein IE1_03132 [Bacillus cereus BAG3O-2]
gi|423430388|ref|ZP_17407392.1| hypothetical protein IE7_02204 [Bacillus cereus BAG4O-1]
gi|401099746|gb|EJQ07747.1| hypothetical protein IE1_03132 [Bacillus cereus BAG3O-2]
gi|401119315|gb|EJQ27130.1| hypothetical protein IE7_02204 [Bacillus cereus BAG4O-1]
Length = 454
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|350565867|ref|ZP_08934594.1| ATP-dependent RNA helicase DeaD [Peptoniphilus indolicus ATCC
29427]
gi|348663346|gb|EGY79932.1| ATP-dependent RNA helicase DeaD [Peptoniphilus indolicus ATCC
29427]
Length = 547
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 123/202 (60%), Gaps = 17/202 (8%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E +S +KA+ G+ + + +Q +++ LEG+D + +A+TGTGK+ +F +P IE
Sbjct: 56 KFNELSLSAEILKAVEEMGFEEASPIQAQSITPLLEGRDLIGQAQTGTGKTASFGIPMIE 115
Query: 440 AVLKATSSSTTQLVPPIYV--LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
V P YV L+LCPTREL Q+A E L K GI V+ + GGT F
Sbjct: 116 IV-----------EPENYVQGLVLCPTRELTIQVANEITKLAKYKKGIHVVPIYGGTNFD 164
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ L++D QI+V TPGR++DH+ ++ ++L LK+ VLDEAD + D+GFR D++
Sbjct: 165 RQRVALKND-AQIVVGTPGRIMDHLRRRT---LKLGDLKIAVLDEADEMFDMGFRDDMKT 220
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I D R +Q+ FSATM KE+
Sbjct: 221 IFDQTNREKQTCFFSATMGKEI 242
>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
Length = 458
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|386745290|ref|YP_006218469.1| ATP-dependent RNA helicase DbpA [Providencia stuartii MRSN 2154]
gi|384481983|gb|AFH95778.1| ATP-dependent RNA helicase DbpA [Providencia stuartii MRSN 2154]
Length = 457
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 115/189 (60%), Gaps = 18/189 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTT 450
LT GY+ MT +QEA L A L GKD +AKTG+GK+ AF LL I+A +T S
Sbjct: 18 LTELGYVTMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAKQFSTQS--- 74
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
L+LCPTRELA Q+A+E L + I +LTL GG F V QR I
Sbjct: 75 --------LVLCPTRELADQVASELRRLARYMANIKILTLCGGVPFSV-QRDSLIHAAHI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRLLDH+ ++ V+L L+ LVLDEAD +LD+GF D++ ++ P RQ+LL
Sbjct: 126 IVATPGRLLDHLNKET---VKLDTLQTLVLDEADRMLDMGFADDIDEVISYAPISRQTLL 182
Query: 571 FSATMPKEL 579
FSAT P+ +
Sbjct: 183 FSATWPETI 191
>gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 639
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 124/206 (60%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 26 KTFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 85
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 86 HNLAGQETFVPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 145
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L ++ L++DEAD +LDLGF +D
Sbjct: 146 PFGKQIQQLKG--AQVIVATPGRLLDLVNRR---QLKLDKVEALIVDEADRMLDLGFSED 200
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D RRQ+L+FSAT ++
Sbjct: 201 LEAISDLAGNRRQTLMFSATFADRII 226
>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
Length = 506
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 124/220 (56%), Gaps = 22/220 (10%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P + F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF
Sbjct: 25 PAADEPSFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAF 84
Query: 434 LLPAIEAVLKATSSSTT------------------QLVPPIYVLILCPTRELASQIAAEA 475
+LPAIE + + Q V +L+L PTRELA Q+ A
Sbjct: 85 MLPAIERFAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAA 144
Query: 476 IALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535
K+ + ++++GG + L +P +ILVATPGRLLDH+E + L L
Sbjct: 145 STYGKHLKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSEL 200
Query: 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
KMLVLDEAD +LD+GF +D+E IV+ P RQ++LFSAT+
Sbjct: 201 KMLVLDEADRMLDMGFIEDIETIVEATPESRQTMLFSATL 240
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 35 FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 94
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 95 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 153
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L ++L+ATPGRLLDH++ K + L +++LVLDEAD +LD+GF D++ I++
Sbjct: 154 AELRRG-VEVLIATPGRLLDHVQQK---TANLGQVQILVLDEADRMLDMGFLPDLQRILN 209
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 210 LLPKERQTLLFSATFSGE-IKKLASTYL 236
>gi|402557327|ref|YP_006598598.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
gi|401798537|gb|AFQ12396.1| DEAD/DEAH box helicase [Bacillus cereus FRI-35]
Length = 450
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 124/220 (56%), Gaps = 13/220 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVET 598
+D P +Q++LFSATMPK+ + K Y+D + VE+
Sbjct: 173 LDETPGSKQTMLFSATMPKD-IKKLAKRYMDEPQMIQVES 211
>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 455
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 118/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P ++A+T GY T +Q + ++G+D + A+TGTGK+ AF LP +
Sbjct: 14 FSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILHR 73
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+++ ++S + P+ LIL PTRELA Q+ A+++ + + GG Q
Sbjct: 74 LMQFANTSASPARHPVRALILTPTRELADQV-ADSVTTYAKFTPLRSTVVFGGVDIG-PQ 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R C+IL+ATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D++ IV
Sbjct: 132 RDALRRGCEILIATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLDRIVR 188
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ LLFSAT E+
Sbjct: 189 LLPAKRQGLLFSATFSNEI 207
>gi|365903699|ref|ZP_09441522.1| ATP-dependent RNA helicase [Lactobacillus malefermentans KCTC 3548]
Length = 541
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +G+ + T +Q T+ L+GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFTELGLSDALLKAIKRSGFEEATPIQAETIPLVLQGKDIIGQAQTGTGKTAAFSLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I L++ PTRELA Q E L K+ V + GG +
Sbjct: 62 KVDLHN--------PQIQALVVSPTRELAIQTQEEIFRLGKDEHA-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+S P QI+V TPGRLLDHI + V+L +K LVLDEAD +L++GF D+E+I+
Sbjct: 113 INSLKSHP-QIIVGTPGRLLDHIRRGT---VKLDHVKTLVLDEADEMLNMGFLDDIEDII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSATMP E+
Sbjct: 169 KQLPEDRQTLLFSATMPPEI 188
>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
Length = 458
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|194246516|ref|YP_002004155.1| superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
Length = 531
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 18/199 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ I P T KAL +++ T +Q +S +EG D + +A+TGTGK+ AF +P IE
Sbjct: 5 FENFNILPQTQKALKELNFLKPTAIQNLVISEMIEGYDIIGQAQTGTGKTFAFGIPIIEK 64
Query: 441 V---LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+ +K T S LILCPTRELA Q+ E L+K + I + + GG +
Sbjct: 65 IDLNIKQTQS-----------LILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYI 113
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ LE+ P I++ATPGR++D +E K + GLK+L LDEAD +L++GF++ +E
Sbjct: 114 KQFKVLETKP-HIIIATPGRVIDLLERKK---IDFSGLKILTLDEADEMLNMGFQEALET 169
Query: 558 IVDCLPRRRQSLLFSATMP 576
I+ +P++RQ++LFSAT+P
Sbjct: 170 ILQKIPKKRQTVLFSATLP 188
>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
Length = 524
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 123/210 (58%), Gaps = 19/210 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 42 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 101
Query: 440 -AVLKATSSST-------------TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485
A L+ T + Q V +L+L PTRELA Q+ A K+ +
Sbjct: 102 FAQLQKTQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRL 161
Query: 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545
++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDEAD
Sbjct: 162 RTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDEADR 217
Query: 546 LLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
+LD+GF D+E IV P RQ++LFSAT+
Sbjct: 218 MLDMGFIDDIETIVAATPATRQTMLFSATL 247
>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|423424574|ref|ZP_17401605.1| hypothetical protein IE5_02263 [Bacillus cereus BAG3X2-2]
gi|423506009|ref|ZP_17482599.1| hypothetical protein IG1_03573 [Bacillus cereus HD73]
gi|449089347|ref|YP_007421788.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|401113346|gb|EJQ21215.1| hypothetical protein IE5_02263 [Bacillus cereus BAG3X2-2]
gi|402448940|gb|EJV80778.1| hypothetical protein IG1_03573 [Bacillus cereus HD73]
gi|449023104|gb|AGE78267.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 458
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDSESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
Length = 478
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 117/199 (58%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ + P + A+ GY + T +Q + A ++G+D A+TGTGK+ AF+LP I
Sbjct: 3 FDDLDLDPRVLSAVKETGYTEPTPIQAQAIPAIIQGRDVTGIAQTGTGKTAAFVLPMIHK 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + + LIL PTRELA+Q+A NH + + L+GG F DQ
Sbjct: 63 LGQGRAKARMP-----RTLILEPTRELAAQVADNFEKYGVNHK-LNMALLIGGVSF-ADQ 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ + +L+ATPGRL+DH E L + G++MLV+DEAD +LD+GF D+E I
Sbjct: 116 DKKLTAGVDVLIATPGRLMDHFERGRLL---MTGVQMLVIDEADRMLDMGFIPDIEKICK 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RRQ+LLFSATMP E+
Sbjct: 173 LLPPRRQTLLFSATMPPEI 191
>gi|378727281|gb|EHY53740.1| DEAD box RNA helicase HelA [Exophiala dermatitidis NIH/UT8656]
Length = 673
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 128/219 (58%), Gaps = 13/219 (5%)
Query: 402 MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQL-VPPIYVLI 460
MT VQ T++ CL+G D V +A+TGTGK++AFL P ++ +L + +T + + I LI
Sbjct: 106 MTEVQRMTINECLDGSDVVAQARTGTGKTLAFLTPIVQRLLGDPALNTRRASINDIRALI 165
Query: 461 LCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLD 520
L PTRELA QI EA ++ G+ V T VGGT+ + + ++ C ILV TPGR+ D
Sbjct: 166 LSPTRELAEQIGEEARKIVSG-TGVQVQTAVGGTQKRYHLKLMQRMGCHILVGTPGRVKD 224
Query: 521 HIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMP 576
+ + VRL ++ VLDEAD LLD+GF D+ I +P R RQ+L+FSATMP
Sbjct: 225 LLSDPDS-GVRLDNIQTFVLDEADRLLDIGFAPDIAEIQSYMPPRDQKDRQTLMFSATMP 283
Query: 577 KELV------LKREHTYIDTVGLGSVETPVKVSKYNIYV 609
+ +V +KR+ ++ T+ T V + +Y+
Sbjct: 284 RSVVGLVKQTMKRDFKFVRTIDPNEAATHESVPQNVVYL 322
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 11/198 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
++F IS ++AL G+ + T +Q + L+G+D + +A+TGTGK+ AF +P +
Sbjct: 3 EKFQNLNISTTILQALNTMGFEEPTPIQAEAIPVALQGQDMIGQAQTGTGKTAAFGIPVL 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E +L ++ +S Q ++L PTRELA Q+ AE + L + I L + GG +
Sbjct: 63 EKILASSKTSNVQ------TIVLSPTRELAMQV-AEELNHLAQYTSIQALPIYGGQDMER 115
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
RRL P QI+VATPGRL+DH+ K G ++ L + +VLDEAD +LD+GF D+ I
Sbjct: 116 QLRRLRKHP-QIIVATPGRLIDHM--KRG-TIHLDEISTIVLDEADEMLDMGFIDDIHTI 171
Query: 559 VDCLPRRRQSLLFSATMP 576
+ P RQ+LLFSATMP
Sbjct: 172 MSATPETRQTLLFSATMP 189
>gi|423551771|ref|ZP_17528098.1| hypothetical protein IGW_02402 [Bacillus cereus ISP3191]
gi|401187609|gb|EJQ94682.1| hypothetical protein IGW_02402 [Bacillus cereus ISP3191]
Length = 454
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + + VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDMNVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|423435903|ref|ZP_17412884.1| hypothetical protein IE9_02084 [Bacillus cereus BAG4X12-1]
gi|401123386|gb|EJQ31162.1| hypothetical protein IE9_02084 [Bacillus cereus BAG4X12-1]
Length = 446
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDSESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|386812364|ref|ZP_10099589.1| RNA helicase [planctomycete KSU-1]
gi|386404634|dbj|GAB62470.1| RNA helicase [planctomycete KSU-1]
Length = 568
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 135/222 (60%), Gaps = 12/222 (5%)
Query: 359 KLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKD 418
K N G++K EE + + RF++ +S KA+ G+ + T +Q + L+GKD
Sbjct: 5 KRNIEGDRKGYMEELTDIEKLRFEDLHVSEELRKAIKDMGFEEATPIQYQAIPYILKGKD 64
Query: 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478
+ +A+TGTGK+ AF +P +E + T + +ILCPTRELA Q+A E L
Sbjct: 65 IIGQAQTGTGKTAAFGIPTLEMIDPGTRE--------LQAIILCPTRELAIQVAEEMKKL 116
Query: 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538
K I +L + GG + + L+ QI++ TPGR++DH+ ++ +++ ++++
Sbjct: 117 SKYKKAIEILPIYGGQPIERQIKALKKG-VQIIIGTPGRVMDHMNRRT---LKMDAVRII 172
Query: 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580
+LDEAD +LD+GFR+D+E I++ + R+RQ++LFSATMP+ ++
Sbjct: 173 ILDEADEMLDMGFREDIEFIMEKISRKRQTILFSATMPQAIL 214
>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
Length = 458
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDSESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
Length = 527
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 118/200 (59%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+T AGY T +Q + L GKD + A+TGTGK+ +F+LP +
Sbjct: 14 FSDLGLSPKVLSAVTDAGYTVPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLTR 73
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ + KNH + + L+GG F
Sbjct: 74 LEKGRARARMP-----RTLILEPTRELAAQVEENFVKYGKNHK-LNIALLIGGVSFDEQD 127
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I +
Sbjct: 128 KKLERG-ADVLIATPGRLLDHRERGKLL---LNGVEILVIDEADRMLDMGFIPDIERICE 183
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 184 MIPFTRQTLFFSATMPPEIT 203
>gi|359428657|ref|ZP_09219687.1| ATP-dependent RNA helicase [Acinetobacter sp. NBRC 100985]
gi|358235843|dbj|GAB01226.1| ATP-dependent RNA helicase [Acinetobacter sp. NBRC 100985]
Length = 639
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 123/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE + A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 7 KTFAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
A+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 67 NALAGQETFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L ++ L++DEAD +LDLGF +D
Sbjct: 127 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVESLIVDEADRMLDLGFSED 181
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 182 LEAISDLAANRNQTLMFSATFADRII 207
>gi|410659385|ref|YP_006911756.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|410662371|ref|YP_006914742.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
gi|409021740|gb|AFV03771.1| Cold-shock DEAD-box protein A [Dehalobacter sp. DCA]
gi|409024727|gb|AFV06757.1| Cold-shock DEAD-box protein A [Dehalobacter sp. CF]
Length = 471
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 124/200 (62%), Gaps = 13/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S + +A++ G+ + T +QE T+ LEGKD + +A+TGTGK+ AF +P IE
Sbjct: 4 FFEIGLSSVLTQAISEMGFEETTPIQERTIPLVLEGKDIIGQAQTGTGKTAAFGIPMIER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S I L++ PTRELA Q+A E + + G+ L + GG
Sbjct: 64 MKPDRES--------IKALVVTPTRELAIQVAEE-LNRIGQFKGVRSLPIYGGQDIDRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L + P QI+V TPGRL+DH+ ++ +RL ++ +VLDEAD +L +GF +D+ENI+
Sbjct: 115 RSLRNRP-QIIVGTPGRLMDHMRRRT---IRLQQVETVVLDEADEMLSMGFVEDIENILK 170
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P +RQ+LLFSATMPK ++
Sbjct: 171 EVPEQRQTLLFSATMPKSIL 190
>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
Length = 502
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 125/199 (62%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++ ++A+T G+ + T +Q AT+ LEGKD + +A+TGTGK+ AF +P I+
Sbjct: 4 FYEFGLNSEVVRAVTQMGFEEATPIQAATIPTALEGKDIIGQAQTGTGKTGAFGVPLIDR 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + LIL PTRELA+Q+A E++ + G+ + + GG +
Sbjct: 64 INIENDH--------VQALILAPTRELANQVA-ESLFKFGKYKGVRTVVVYGGQDMRKQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L++ P ++VATPGRL+DH+ K+ +RL ++ +VLDEAD +L++GF +D+E I+
Sbjct: 115 RDLKNKP-HVVVATPGRLMDHMRRKT---IRLGQVETVVLDEADEMLNMGFIEDIETILS 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMPK +
Sbjct: 171 EVPNERQTLLFSATMPKRI 189
>gi|332208126|ref|XP_003253149.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 1
[Nomascus leucogenys]
Length = 872
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETVSFHATDLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|381336049|ref|YP_005173824.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644015|gb|AET29858.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 540
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 123/209 (58%), Gaps = 16/209 (7%)
Query: 368 EKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGT 427
K + E IL +F E G+S + A+T GY++ T +QE T+ L G+D + +A+TGT
Sbjct: 5 HKAQGEKIL---KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGT 61
Query: 428 GKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGV 487
GK+ AF LP +E + + I LI+ PTRELA Q AE + L + V
Sbjct: 62 GKTAAFGLPILEHIDLNNKN--------IQALIVSPTRELAIQ-TAEELKKLGRDKRVDV 112
Query: 488 LTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ GG + + L+S P QILV TPGRLLDHI K +V++ ++ LVLDEAD +L
Sbjct: 113 QVVFGGADIRRQIQNLKSHP-QILVGTPGRLLDHINRK---TVKIDNVRTLVLDEADEML 168
Query: 548 DLGFRKDVENIVDCLPRRRQSLLFSATMP 576
++GF D+E I+ P RQ+LLFSATMP
Sbjct: 169 NMGFLDDIEAIISKTPAERQTLLFSATMP 197
>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
Length = 458
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
G9241]
Length = 451
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
Length = 446
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 121/209 (57%), Gaps = 6/209 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P ++++ GY T +Q L A + G+D + A+TGTGK+ AF LP +
Sbjct: 19 FADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILHR 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + P+ LIL PTRELA Q+ E++ H + + GG +
Sbjct: 79 LMPLANTSASPARHPVRTLILTPTRELADQV-YESVKRYSKHTPLRSAVVFGGVDIGPQK 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L C+ILVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D++ IV
Sbjct: 138 EALRRG-CEILVATPGRLLDHVEQK---TVNLSQVGILVLDEADRMLDMGFLPDLDRIVR 193
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYID 589
LP +RQ LLFSAT E + K TY++
Sbjct: 194 LLPAQRQGLLFSATFSNE-IRKLGRTYLN 221
>gi|423529710|ref|ZP_17506155.1| hypothetical protein IGE_03262 [Bacillus cereus HuB1-1]
gi|402448192|gb|EJV80040.1| hypothetical protein IGE_03262 [Bacillus cereus HuB1-1]
Length = 454
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|390944989|ref|YP_006408750.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418417|gb|AFL85995.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 591
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 124/209 (59%), Gaps = 19/209 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GIS +KA+ GY Q + +Q ++ L+G+D + +A+TGTGK+ +F +P I+
Sbjct: 7 FSDLGISSEILKAVEDMGYTQPSTIQSQSIPLLLDGRDVIGQAQTGTGKTASFGIPIID- 65
Query: 441 VLKATSSSTTQLVPPI---YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
Q+ P I LILCPTRELA Q+ E + L K GI + GG
Sbjct: 66 ----------QVDPTINKPQALILCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGESID 115
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ L+ QI+V TPGR++DH++ ++ + L + ++VLDEAD +LD+GFR D+E
Sbjct: 116 RQIKSLKRG-VQIVVGTPGRIMDHMQRRT---LNLSQISIIVLDEADEMLDMGFRDDIET 171
Query: 558 IVDCLPRRRQSLLFSATMPKELV-LKREH 585
I+ +P RQ++ FSATMPK ++ L R++
Sbjct: 172 ILSSMPEERQTVFFSATMPKPILDLTRKY 200
>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
Length = 454
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|423383903|ref|ZP_17361159.1| hypothetical protein ICE_01649 [Bacillus cereus BAG1X1-2]
gi|401641163|gb|EJS58884.1| hypothetical protein ICE_01649 [Bacillus cereus BAG1X1-2]
Length = 454
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|46115318|ref|XP_383677.1| hypothetical protein FG03501.1 [Gibberella zeae PH-1]
Length = 1481
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 147/251 (58%), Gaps = 23/251 (9%)
Query: 376 LSQKRFDEC----GISPLTIKALTAAGYIQ-MTRVQEATLSACL--EGKDAVVKAKTGTG 428
S +RFD + P+ ++ +T + MT VQ +TL L + D +V+A+TGTG
Sbjct: 70 FSTRRFDSLLENSQVDPIVVRTITNDMKFEFMTPVQASTLDELLPPQRNDCLVQARTGTG 129
Query: 429 KSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
K++AFLLPA++ ++ S + I +L++ PTRELA QIAAEA +LKN V
Sbjct: 130 KTMAFLLPALQTMINQKRGSGSG----ISLLVISPTRELAQQIAAEATRVLKNLPQYRVQ 185
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
++GGT ++R + C+IL+ATPGRLLDH+ ++ + + + LVLDEAD LLD
Sbjct: 186 CVMGGTNKDREERAILGG-CEILIATPGRLLDHMSSED-IRYSMRHVDTLVLDEADRLLD 243
Query: 549 LGFRKDVENIVDCLPRR----RQSLLFSATMP------KELVLKREHTYIDTVGLGSVET 598
+GF KD+ +IV LP + RQ +LFSAT+ ELV ++ +I T+ G V T
Sbjct: 244 MGFLKDLRSIVKQLPDKAKTNRQGMLFSATIAPHVKQVAELVCSPQYKFISTIPEGEVNT 303
Query: 599 PVKVSKYNIYV 609
+V ++ + V
Sbjct: 304 HERVPQFLVQV 314
>gi|146278925|ref|YP_001169084.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145557166|gb|ABP71779.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 764
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 114/182 (62%), Gaps = 7/182 (3%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY +T VQEA L+ + G+DA+V A+TG+GK++AF + + +L+ P
Sbjct: 18 GYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAVADQILQGADRLLFADTP--I 75
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
L + PTRELA Q+A E + L G + T VGG ++ ++R LE I+V TPGR
Sbjct: 76 ALAIAPTRELALQVARE-LGWLYAEAGAQIATCVGGMDYRTERRALERG-AHIVVGTPGR 133
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
L DHIE S + L GL+ +VLDEAD +LDLGFR+D+E I+ P R++L+FSAT+PK
Sbjct: 134 LRDHIERGS---LDLTGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPK 190
Query: 578 EL 579
E+
Sbjct: 191 EI 192
>gi|423575831|ref|ZP_17551950.1| hypothetical protein II9_03052 [Bacillus cereus MSX-D12]
gi|401209156|gb|EJR15916.1| hypothetical protein II9_03052 [Bacillus cereus MSX-D12]
Length = 454
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+
Sbjct: 1 MVNLKNFLELGISETFNHTLRENGITEATPIQEEAIPVILSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLTTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
Length = 446
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPKSSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|30262474|ref|NP_844851.1| DEAD/DEAH box helicase [Bacillus anthracis str. Ames]
gi|47527766|ref|YP_019115.1| DEAD/DEAH box helicase [Bacillus anthracis str. 'Ames Ancestor']
gi|49185310|ref|YP_028562.1| DEAD/DEAH box helicase [Bacillus anthracis str. Sterne]
gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase [Bacillus anthracis str. CDC 684]
gi|386736224|ref|YP_006209405.1| ATP-dependent RNA helicase [Bacillus anthracis str. H9401]
gi|421636278|ref|ZP_16076877.1| ATP-dependent RNA helicase [Bacillus anthracis str. BF1]
gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Ames]
gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. 'Ames Ancestor']
gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Sterne]
gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0442]
gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0465]
gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. CDC 684]
gi|384386076|gb|AFH83737.1| ATP-dependent RNA helicase [Bacillus anthracis str. H9401]
gi|403396806|gb|EJY94043.1| ATP-dependent RNA helicase [Bacillus anthracis str. BF1]
Length = 450
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSAT+PK++
Sbjct: 173 LDETPGSKQTMLFSATIPKDI 193
>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 528
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+T GY++ T +QE T+ L G+D + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I LI+ PTRELA Q AE + L + V + GG +
Sbjct: 62 HIDLNNKN--------IQALIVSPTRELAIQ-TAEELKKLGRDKRVDVQVVFGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K +V++ ++ LVLDEAD +L++GF D+E I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHINRK---TVKIDNVRTLVLDEADEMLNMGFLDDIEAII 168
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSATMP
Sbjct: 169 SKTPAERQTLLFSATMP 185
>gi|381150962|ref|ZP_09862831.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882934|gb|EIC28811.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 425
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 123/199 (61%), Gaps = 7/199 (3%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G++ +KA+ GY+ T +Q+ T+ L+G+D + A+TGTGK+ +F LP ++
Sbjct: 3 FAQLGLAAPLLKAVAEQGYVTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLLQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ A S+ Q I LIL PTRELA+Q+ +++ H + +VGG
Sbjct: 63 L--AESNDKPQKPRKIRALILAPTRELAAQVH-DSVRAYGKHLPLFAEVVVGGVSINGQI 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ C I+VATPGRLLDH+ K+ + L L++LVLDEAD +LD+GF D+ I+
Sbjct: 120 RSLQRG-CDIVVATPGRLLDHLLQKN---IELSHLEILVLDEADRMLDMGFLPDIRKIIG 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
LPR++QSLLFSAT P+E+
Sbjct: 176 HLPRQKQSLLFSATFPEEI 194
>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1001]
gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 467
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 12/207 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
PI + F++ + + LT GY++MT +Q A+L L G D + +AKTG+GK+ AF
Sbjct: 4 PITAGAPFNQLPLPAAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAF 63
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L A+ A L A + + ++LCPTRELA Q+ E L + + I VLTL GG
Sbjct: 64 SL-ALLARLDARKFA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGG 115
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + LE I+V TPGR++DH+E S + L L LVLDEAD +LD+GF
Sbjct: 116 TPMRPQTASLEHG-AHIVVGTPGRIMDHLERGS---LPLQSLNTLVLDEADRMLDMGFFD 171
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELV 580
D+ +V P+ RQ+LLFSAT P+ +V
Sbjct: 172 DIATVVRQCPKERQTLLFSATYPEGIV 198
>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 454
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 12/205 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
+++ K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+
Sbjct: 1 MVNVKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFV 60
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP +E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 61 LPILEKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ 112
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D
Sbjct: 113 DVAQQLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLTTIVLDEADQMLYFGFLYD 168
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E+I+D P +Q++LFSATMPK++
Sbjct: 169 IEDILDETPGSKQTMLFSATMPKDI 193
>gi|431805723|ref|YP_007232624.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
gi|430799698|gb|AGA64369.1| ATP-dependent RNA helicase [Liberibacter crescens BT-1]
Length = 464
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 10/200 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + G+S I ++ +GY+ T +QE + L+G D + A+TGTGK+ +F+LP +
Sbjct: 2 KFSDLGLSLKVISSIVDSGYVNPTLIQEKAIPLILQGHDVLGLAQTGTGKTASFVLPMLT 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ ++ + + L LIL PTRELA+Q+A KNH + V L+GG F+
Sbjct: 62 ILEESRARARMPLA-----LILEPTRELAAQVADSFEKYGKNHK-LNVALLIGGVSFEEQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+LE +L+ TPGR+LDH E L + G+K+LV+DEAD +LD+GF D+ENIV
Sbjct: 116 NRKLERG-VDVLICTPGRMLDHFERGKLL---MSGIKILVIDEADRMLDMGFIPDIENIV 171
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ RQ+LLFSATM EL
Sbjct: 172 RIISSTRQTLLFSATMSLEL 191
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 121/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD + P ++A+ AGY MT +Q + L+G+D + A+TGTGK+ AF +P ++
Sbjct: 19 FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQK 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ ++S + P+ L+L PTRELA Q+AA + H + + GG K
Sbjct: 79 MLRHENTSMSPARHPVRALVLAPTRELADQVAAN-VKTYAKHTRLRSAVVFGGVDMKPQT 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L++ ++L+ATPGRLLDHIE ++ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 138 AELKAG-VEVLIATPGRLLDHIEARNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 193
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ RQ+LLFSAT E+
Sbjct: 194 FLPKTRQTLLFSATFSPEI 212
>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 500
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 13/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S L++ G + T VQ + L G D +V+A+TGTGK++AF LP +E
Sbjct: 5 FSTLGVSQELTSVLSSYGITEPTPVQHKAIPLVLNGADVIVQAQTGTGKTLAFALPILER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ T+ + TQ LIL PTRELA QI E L K G +L GG +
Sbjct: 65 I--DTTKNHTQ------ALILTPTRELAIQITTELNKLAKT-VGANILAAYGGQDVESQI 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L + I++ATPGRLLDH+ + ++RL ++MLVLDEAD +L +GF DVE IV
Sbjct: 116 RKLRNSWPHIVIATPGRLLDHLRRE---TIRLGKIRMLVLDEADQMLHMGFLPDVETIVS 172
Query: 561 CLPRR-RQSLLFSATMPKEL 579
+PR+ RQ++LFSATMP ++
Sbjct: 173 SMPRQHRQTMLFSATMPAQI 192
>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
AH1134]
Length = 458
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPDSKQTMLFSATMPKDI 193
>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 455
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 22/225 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ + P +KA+ AAGY T +Q+ + + G D + A+TGTGK+ AF+LPA+
Sbjct: 3 FENLNLHPAIVKAVLAAGYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPALHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ AT + P I L+L PTRELA Q++ A K + V++++GG + + Q
Sbjct: 63 L--ATPAKIQGRGPRI--LVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPL-Q 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L S +LVATPGRL+DHIE + L+MLVLDEAD +LD+GF DVE I
Sbjct: 118 NKLLSQVVDVLVATPGRLIDHIERG---RIDFSRLEMLVLDEADRMLDMGFIHDVERIAS 174
Query: 561 CLPRRRQSLLFSAT--------------MPKELVLKREHTYIDTV 591
P RQ+LLFSAT MPK + + +H +D +
Sbjct: 175 STPTNRQTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKLDHI 219
>gi|417885327|ref|ZP_12529482.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
gi|341595982|gb|EGS38619.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
Length = 498
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 119/200 (59%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ +GY + T +QE T+ L+G+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I LI+ PTRELA Q E L K+ + V + GG +
Sbjct: 62 HVDTDN--------PNIQALIISPTRELAIQTQEELYRLGKD-KRVRVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+ P QILV TPGRL DHI +V+L ++ LVLDEAD +L++GF +D+E I+
Sbjct: 113 IKSLKHHP-QILVGTPGRLRDHINRH---TVKLGHIQTLVLDEADEMLNMGFLEDIEAII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 169 KETPAERQTLLFSATMPPEI 188
>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
America USA6153]
gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0488]
gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0193]
gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0389]
gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0174]
gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. Tsiankovskii-I]
gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
anthracis str. A0248]
Length = 447
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSAT+PK++
Sbjct: 170 LDETPGSKQTMLFSATIPKDI 190
>gi|386748255|ref|YP_006221463.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 99-5656]
gi|384554497|gb|AFI06253.1| ATP-dependent RNA helicase [Helicobacter cetorum MIT 99-5656]
Length = 507
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 119/199 (59%), Gaps = 14/199 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G+ P +K++ AG+ + +QE + A LEG+D V +A+TGTGK+ AF LP I
Sbjct: 38 FNDLGLKPQVLKSVYEAGFNSPSPIQEKAIPAVLEGRDVVAQAQTGTGKTAAFALPIINN 97
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
LK + I LI+ PTRELA QI+ E L K H + + GG K
Sbjct: 98 -LKNNHT--------IEALIITPTRELAMQISDEIFKLGK-HTKTRTVCVYGGQSIKRQC 147
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+E +P Q+++ATPGRLLDH++N+ + K++VLDE+D +LD+GF D+E I D
Sbjct: 148 EFIEKNP-QVMIATPGRLLDHLKNE---RIHRFVPKVVVLDESDEMLDMGFLDDIEEIFD 203
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP Q LLFSATMP+ +
Sbjct: 204 YLPSEAQILLFSATMPEPI 222
>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
Length = 470
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 8/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + G++ +KAL GY+ T +Q + + G+D + A+TGTGK+ AF LP +
Sbjct: 3 QFTDLGLAKPLLKALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPILH 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + + VL+L PTRELA+QIA E+ H G+ V + GG ++
Sbjct: 63 RLAEDRRPAPRRSA---RVLVLSPTRELATQIA-ESFKAYGRHLGLSVAVIFGGVKYGPQ 118
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L +LVATPGRL+DH++ KS V L G++ VLDEAD +LD+GF + IV
Sbjct: 119 MRALAGG-VDVLVATPGRLIDHLQEKS---VVLEGVETFVLDEADQMLDMGFIVPIRRIV 174
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP+RRQ+L FSATMP E+
Sbjct: 175 KFLPKRRQNLFFSATMPAEI 194
>gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase [Bacillus cytotoxicus NVH 391-98]
gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
391-98]
Length = 434
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 120/201 (59%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K+F E G+S L G + T +QE + ++GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KKFLELGMSETFQHTLRENGIAEATPIQEKAIPVIMDGKDVIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S I LI+ PTRELA QI E +L + I VL + GG +
Sbjct: 65 ENIDPNASD--------IQALIVAPTRELALQITTEIKKMLVHKQDIHVLAIYGGQDVEQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
++L+ + I+VATPGRLLDH+ + ++ L + M+VLDEAD +L GF D+E+I
Sbjct: 117 QMKKLKGN-THIVVATPGRLLDHLRRE---TIVLSNVSMVVLDEADQMLHFGFLYDIEHI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ P +Q++LFSATMPK++
Sbjct: 173 LEETPENKQTMLFSATMPKDI 193
>gi|403262859|ref|XP_003923784.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 1
[Saimiri boliviensis boliviensis]
Length = 869
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TVSFHATDLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|351730076|ref|ZP_08947767.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 498
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +QE + L G+D + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYESMTPIQEQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK SSST+ P+ L+L PTRELA Q+ A+ IAL + + + GG K
Sbjct: 65 LLKHESSSTSPARHPVRALVLLPTRELADQV-AQQIALYAKYTKLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 IELKKG-VEVLVATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 YLPKQRTTLLFSATFSPEI 198
>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase [Methylovorus glucosetrophus SIP3-4]
gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
MP688]
gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus glucosetrophus
SIP3-4]
gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
Length = 459
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 121/196 (61%), Gaps = 5/196 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + G++P +KAL GY T +Q + L+G D + A+TGTGK+ AF LP ++
Sbjct: 7 RFADLGLAPEILKALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQ 66
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L SSS + P+ LIL PTRELA Q+ E++ + H + L + GG K
Sbjct: 67 KLLPQASSSASPARHPVRALILTPTRELAIQV-EESVKVYAKHTALRSLVVFGGVDIKTQ 125
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L +ILVATPGRLLDH+E + +V+L ++ML+LDEAD +LD+GF D++ I+
Sbjct: 126 TPSLMKG-VEILVATPGRLLDHVEQR---TVQLGQVQMLILDEADRMLDMGFMPDLKRIL 181
Query: 560 DCLPRRRQSLLFSATM 575
LP++RQ+L+FSAT
Sbjct: 182 ALLPKKRQNLMFSATF 197
>gi|421873722|ref|ZP_16305333.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
gi|372457268|emb|CCF14882.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus GI-9]
Length = 497
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 114/200 (57%), Gaps = 12/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F GI KAL G T +QE + A L G D + +A+TGTGK++AF+LP ++
Sbjct: 3 KFQSLGIQASIEKALQQNGLYSPTEIQEKGIPAVLTGVDVIAQAQTGTGKTLAFVLPILQ 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ P + LI+ PTRELA QI AE L+ G+ VL + GG +
Sbjct: 63 MINPEN--------PDVQALIVTPTRELALQITAEVNKLIFTQPGVQVLAIYGGQDVERQ 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L QI++ATPGRLLDH+ + ++L + LVLDEAD +L LGF +VE I+
Sbjct: 115 MKKLRGS-RQIVIATPGRLLDHMRRGT---IQLAQVSQLVLDEADQMLHLGFLPEVEEII 170
Query: 560 DCLPRRRQSLLFSATMPKEL 579
RQ+LLFSATMPK++
Sbjct: 171 QATSPTRQTLLFSATMPKQI 190
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 118/200 (59%), Gaps = 8/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + G+SP + L GY + T VQ + L+G D + A+TGTGK+ AF LP ++
Sbjct: 3 KFSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQ 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L + ++V LIL PTRELASQIA E+ G+ + T+ GG ++
Sbjct: 63 HLLSNRKMPSPKMV---RALILSPTRELASQIA-ESFKTYSKGMGLQIATIYGGVKYGPQ 118
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L +LV TPGRL+DHIE K+ V L ++ VLDEAD +LDLGF K + +
Sbjct: 119 YKALLGG-LDVLVCTPGRLIDHIEQKT---VDLSQVECFVLDEADQMLDLGFVKPIRQVA 174
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP++RQ+L FSATMPKE+
Sbjct: 175 SRLPKKRQNLFFSATMPKEI 194
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase [Methylotenera mobilis JLW8]
gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
Length = 459
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 124/199 (62%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G++P ++ALT +GY T +Q + L G D + A+TGTGK+ AF LP ++
Sbjct: 12 FSTLGLAPELLRALTESGYTTPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFSLPLLQK 71
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++ST+ P+ LIL PTRELA Q+ E++ H + L + GG K
Sbjct: 72 LLPLANNSTSPAKHPVRALILTPTRELAIQV-EESVKAYAKHTQLRSLVVYGGVDIKTQT 130
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L++ ++LVATPGRLLDHIE K +++L ++MLVLDEAD +LD+GF D++ I+
Sbjct: 131 PHLKTG-VEVLVATPGRLLDHIEQK---TLQLNQVQMLVLDEADRMLDMGFMPDLKRILA 186
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++RQ+L+FSAT E+
Sbjct: 187 LLPKQRQNLMFSATFSNEI 205
>gi|410028951|ref|ZP_11278787.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 570
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GIS +KA+ GY + +Q ++ LEGKD + +A+TGTGK+ +F +P I+
Sbjct: 7 FSDLGISAEILKAVEDMGYTHPSTIQAQSIPFLLEGKDVIGQAQTGTGKTASFAIPIIDM 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V + + L+LCPTRELA Q+ E + L K GI + GG
Sbjct: 67 VDASFNKPQA--------LVLCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGESIDRQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L+ QI+V TPGR++DH++ + ++L ++++VLDEAD +LD+GFR+D+ENI+
Sbjct: 119 KSLKKG-VQIVVGTPGRIMDHMDRGT---LKLDHVRIIVLDEADEMLDMGFREDIENILS 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
P RQ++ FSATMPK ++
Sbjct: 175 DCPEERQTVFFSATMPKPIM 194
>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|335049114|ref|ZP_08542124.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|333764226|gb|EGL41626.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
Length = 520
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 144/265 (54%), Gaps = 29/265 (10%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
++F IS + ++AL A G+ + T +Q ++ L+G D + +A+TGTGK+ AF +P +
Sbjct: 3 EKFQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVL 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E +LK + + Q V +L PTRELA Q+ AE + L I L + GG +
Sbjct: 63 EKILKNEPTQSIQTV------VLSPTRELAMQV-AEELNHLAQCTTIQALPIYGGQDMER 115
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
RRL P QI+VATPGRL+DH+ K G ++ L + +VLDEAD +LD+GF D+ I
Sbjct: 116 QLRRLRKHP-QIIVATPGRLMDHM--KRG-TIDLSDIHTIVLDEADEMLDMGFIDDINTI 171
Query: 559 VDCLPRRRQSLLFSATMPKELV--------------LKREHTYIDTVGLGSVETPVKVSK 604
+ P RQ+LLFSATMPK + +K + +D + +ETP + K
Sbjct: 172 MSATPDTRQTLLFSATMPKPIQQLAETFLHEPQIIRMKAKEVTMDLIEQSYIETPDR-QK 230
Query: 605 YNIYVFVLVLSIKIQAFYIICFVYT 629
+++ +L L + I FV T
Sbjct: 231 FDVLCRLLDLQ---EPDLAIIFVRT 252
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|423396915|ref|ZP_17374116.1| hypothetical protein ICU_02609 [Bacillus cereus BAG2X1-1]
gi|401651491|gb|EJS69056.1| hypothetical protein ICU_02609 [Bacillus cereus BAG2X1-1]
Length = 454
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 9/202 (4%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ +K F E G ++ ++ GY+ T +Q + LEG+D + A+TGTGK+ AF L
Sbjct: 1 MDKKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT--LVGG 493
P + ++ S ST+ P+ +L+L PTRELA QI+ IA DG+ + T + GG
Sbjct: 61 PLLNRMIPKASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAY---ADGLPLRTSLIYGG 117
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
F + L I++ATPGRLLDH+E + ++ L ++ L+LDEAD +LD+GF
Sbjct: 118 VDFNAQKHELMRG-ADIVIATPGRLLDHVEQR---TINLNQVEFLILDEADRMLDMGFML 173
Query: 554 DVENIVDCLPRRRQSLLFSATM 575
D+ I+ LP RRQSLL+SAT
Sbjct: 174 DLLKILAQLPSRRQSLLYSATF 195
>gi|339006826|ref|ZP_08639401.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
gi|338776035|gb|EGP35563.1| DEAD-box ATP-dependent RNA helicase CshA [Brevibacillus
laterosporus LMG 15441]
Length = 500
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 114/200 (57%), Gaps = 12/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F GI KAL G T +QE + A L G D + +A+TGTGK++AF+LP ++
Sbjct: 6 KFQSLGIQASIEKALQQNGLHSPTEIQEKGIPAVLTGVDVIAQAQTGTGKTLAFVLPILQ 65
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P + LI+ PTRELA QI AE L+ G+ VL + GG +
Sbjct: 66 MVNPEN--------PDVQALIVTPTRELALQITAEVNKLIFTQPGVQVLAIYGGQDVERQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L QI++ATPGRLLDH+ + ++L + LVLDEAD +L LGF +VE I+
Sbjct: 118 MKKLRGS-RQIVIATPGRLLDHMRRGT---IQLAQVSQLVLDEADQMLHLGFLPEVEEII 173
Query: 560 DCLPRRRQSLLFSATMPKEL 579
RQ+LLFSATMPK++
Sbjct: 174 QATSPTRQTLLFSATMPKQI 193
>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 546
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 117/208 (56%), Gaps = 23/208 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P +KA+TAAGY + T +Q + + G D + A+TGTGK+ F LP I
Sbjct: 20 FSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPIINV 79
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL---------TLV 491
++ + S S + P+ LI+ PTRELA QI HD + +
Sbjct: 80 LMPSASHSASPARHPVRALIIAPTRELADQI----------HDNVKTYIQFTPLRSAAVF 129
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG + L + +IL+ATPGRLLDH++ K SV L +++LVLDEAD +LD+GF
Sbjct: 130 GGVDMQPQTNALRAG-VEILIATPGRLLDHVQQK---SVNLSQVQLLVLDEADRMLDMGF 185
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579
D++ I++ L RRQ+L+FSAT E+
Sbjct: 186 LPDIQRIINLLNPRRQNLMFSATFSDEI 213
>gi|399887481|ref|ZP_10773358.1| ATP-dependent RNA helicase [Clostridium arbusti SL206]
Length = 369
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E GIS I L G + T +Q+ ++S +GKD + +A+TGTGK++AFLLP E
Sbjct: 3 FKELGISEDIINILKKTGITEPTAIQKESISFIKKGKDVIAEAQTGTGKTLAFLLPIFEN 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + P I LI+ PTRELA QI EA+ L + D I +L GG
Sbjct: 63 I--------SPDAPSIQALIVTPTRELAIQITEEAMKLKEAKD-INILAAYGGKDIGSQM 113
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ + +++ATPGRLLDH+ K ++ LM LK LVLDEAD +L +GF+ D+ENI+
Sbjct: 114 KKLKRN-IHLIIATPGRLLDHLARK---TINLMNLKTLVLDEADQILLMGFKNDIENIIK 169
Query: 561 CLPRRRQSLLFSATMPKEL 579
++RQ+L FSATM E+
Sbjct: 170 ETSKKRQTLCFSATMNPEV 188
>gi|451812388|ref|YP_007448842.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778290|gb|AGF49238.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 444
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/260 (38%), Positives = 140/260 (53%), Gaps = 17/260 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ ++ L GYI+ T +QE+ + L G D + A+TGTGK+ AF+LP I
Sbjct: 16 FRSFGLDNSILRVLDEIGYIKPTLIQESAIPNILSGSDFIGAAQTGTGKTAAFVLPIINR 75
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + + LIL PTRELA Q+ E + L + + L L GG + Q
Sbjct: 76 LIPFANNSVSPARHLLRSLILVPTRELADQV-YECVKLYSKNTELRSLVLFGGVDLE-QQ 133
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L C+IL+ATPGRL+ H+ K +V L+ + +LVLDEAD +LD+GF DV+ IV
Sbjct: 134 KVLLHRGCEILIATPGRLIAHMSQK---NVSLINVDILVLDEADRMLDMGFMPDVDRIVG 190
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI------DTVGLGSVETPVKVSKYNI-----YV 609
LPR+RQSLLFSAT E V K TY+ D S+ VK Y I Y
Sbjct: 191 MLPRKRQSLLFSATF-NEDVRKLVLTYLKNPVEADVTVPNSIADTVKQISYKIANNDKYA 249
Query: 610 FVLVLSIKIQAFYIICFVYT 629
+L L ++ + I F T
Sbjct: 250 AILFLIHSVKMKHAIVFTNT 269
>gi|423648357|ref|ZP_17623927.1| hypothetical protein IKA_02144 [Bacillus cereus VD169]
gi|401284762|gb|EJR90623.1| hypothetical protein IKA_02144 [Bacillus cereus VD169]
Length = 454
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|423563181|ref|ZP_17539457.1| hypothetical protein II5_02585 [Bacillus cereus MSX-A1]
gi|401199258|gb|EJR06163.1| hypothetical protein II5_02585 [Bacillus cereus MSX-A1]
Length = 450
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKINPEFSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|114640235|ref|XP_001141618.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Pan
troglodytes]
gi|410221128|gb|JAA07783.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Pan troglodytes]
gi|410260526|gb|JAA18229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Pan troglodytes]
gi|410287964|gb|JAA22582.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Pan troglodytes]
gi|410335061|gb|JAA36477.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Pan troglodytes]
Length = 875
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 474
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 117/200 (58%), Gaps = 12/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
F++ + P + L GY QMT VQ +L L DAVV+A TG+GK+ AF L +
Sbjct: 22 HFNQLNLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLL- 80
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A L+A S S LV LCPTRELA Q+A E L K+ I +LTL GG ++
Sbjct: 81 AKLEAKSFSPQALV-------LCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQ 133
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
LE +LV TPGR+LDH+E ++ V L L LVLDEAD +L++GF+ + IV
Sbjct: 134 TNSLEHG-AHVLVGTPGRVLDHLEQRN---VDLSMLTTLVLDEADRMLEMGFQDSLNAIV 189
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P+ RQ+LLFSAT PK +
Sbjct: 190 KHIPKTRQTLLFSATYPKNI 209
>gi|399116968|emb|CCG19780.1| ATP-dependent rna helicase [Taylorella asinigenitalis 14/45]
Length = 562
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 24/215 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI + +K+L + T VQ ++ LEGKD +V A+TG+GK+ AF+LP+I+
Sbjct: 6 FADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQR 65
Query: 441 VL-------------KATSSSTTQ----LVPPIY---VLILCPTRELASQIAAEAIALLK 480
+L KA SS + PP Y +L+L PTRELA Q+A +
Sbjct: 66 LLHELETRPQTEEISKAKSSRRKKGKPTANPPKYGVQILVLTPTRELAMQVADATKEFIY 125
Query: 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540
G+ + TLVGG + L S +I+VATPGRLLDHI K+G V+L LK+L+L
Sbjct: 126 GFKGVHIATLVGGMAYGPQINSL-SREVEIIVATPGRLLDHI--KAG-RVKLHNLKVLIL 181
Query: 541 DEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
DEAD +LD+GF D++N+V P +Q+LLFSAT
Sbjct: 182 DEADRMLDMGFIHDIKNVVAETPDEKQTLLFSATF 216
>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 467
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 117/204 (57%), Gaps = 12/204 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P + F E + P T+ LT GYI+MT +Q A+L L G+D + +AKTG+GK+ AF
Sbjct: 4 PTPAGAAFSELPLPPATLANLTQLGYIEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAF 63
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L A+ A L A T +V LCPTRELA Q+ E L + + I VLTL GG
Sbjct: 64 SL-ALLARLDARKFDTQAMV-------LCPTRELADQVTQEIRRLARAEENIKVLTLCGG 115
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + LE ++V TPGR++DH+E ++ L L LVLDEAD +LD+GF
Sbjct: 116 TPMRPQTASLEHG-AHVVVGTPGRIMDHLERG---TLVLQALNTLVLDEADRMLDMGFFD 171
Query: 554 DVENIVDCLPRRRQSLLFSATMPK 577
D+ + P+ RQ+LLFSAT P+
Sbjct: 172 DIAKVARQCPKERQTLLFSATYPE 195
>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
Length = 538
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 122/202 (60%), Gaps = 12/202 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
KRF++ I+ KA+ G+ + + +Q ++ LEGKD + +A+TGTGK+ AF +P +
Sbjct: 4 KRFEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPIL 63
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + ++LCPTRELA Q++ E L K GI L + GG
Sbjct: 64 EKIDPNDRS--------LQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDR 115
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L+ Q+++ TPGR +DHI+ K+ ++ +KM+VLDEAD +LD+GFR+D+E I
Sbjct: 116 QIKALKGG-VQVIIGTPGRTIDHIKRKT---IKPGNVKMVVLDEADEMLDMGFREDIETI 171
Query: 559 VDCLPRRRQSLLFSATMPKELV 580
++ +P RQ+ FSATMPK ++
Sbjct: 172 LENVPEERQTTFFSATMPKAIL 193
>gi|367022492|ref|XP_003660531.1| hypothetical protein MYCTH_2298956 [Myceliophthora thermophila ATCC
42464]
gi|347007798|gb|AEO55286.1| hypothetical protein MYCTH_2298956 [Myceliophthora thermophila ATCC
42464]
Length = 630
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 130/219 (59%), Gaps = 24/219 (10%)
Query: 380 RFDEC---GISPLTIKALTAA-GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
RF++ G+ + +LT GY MT VQ T+S L GKD V +AKTGTGK++AFL+
Sbjct: 77 RFEDLRRLGVHEHLVNSLTKGLGYETMTDVQSMTISPALAGKDVVAQAKTGTGKTLAFLV 136
Query: 436 PAIEAVLKATSSSTTQLVPP----------IYVLILCPTRELASQIAAEAIALLKNHDGI 485
P I+ ++ +S +L P I ++L PTRELA QI EA L + G+
Sbjct: 137 PVIQRLI----ASQPELASPRAGGRARSDDIRAIVLSPTRELAEQIGVEAKKLCRG-TGV 191
Query: 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545
+ T VGGT+ R+ + C +LVATPGRL D + ++S + L LVLDEAD
Sbjct: 192 VIQTAVGGTQKNAMLRKTRIEGCHLLVATPGRLHDLLSDRS-TGIDAPNLAALVLDEADR 250
Query: 546 LLDLGFRKDVENIVDCLPR----RRQSLLFSATMPKELV 580
+LD+GF+ ++E+I+D LP RQ+LL+SAT+PK +V
Sbjct: 251 MLDVGFKAELESILDYLPHPVDVPRQTLLYSATIPKNVV 289
>gi|327260241|ref|XP_003214943.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Anolis
carolinensis]
Length = 666
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 128/211 (60%), Gaps = 18/211 (8%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
IS T+K +T G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PAIE + K
Sbjct: 181 ISENTLKGITEMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAIELIYK-- 238
Query: 446 SSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
+ +P VLIL PTRELA Q L+ +H L + GG+ + +RL
Sbjct: 239 ----LKFMPRNGTGVLILSPTRELAMQTYGVLKELMTHHVHTYGLVM-GGSNRSAEAQRL 293
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
+ I+VATPGRLLDH++N G + L+ LV+DEAD +L++GF ++++ I+ LP
Sbjct: 294 -GNGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILEVGFEEEMKQIIKLLP 350
Query: 564 RRRQSLLFSATMPK------ELVLKREHTYI 588
+RRQ++LFSAT + ++ LK+E Y+
Sbjct: 351 KRRQTMLFSATQTRKVEDLAKISLKKEPLYV 381
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 124/200 (62%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S KA+ G+ + T +Q T+ L+G D + +A+TGTGK+ AF +PAIE
Sbjct: 6 FKDLNLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEM 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ I VLIL PTRELA QI+ E + K +GI +L + GG
Sbjct: 66 LDPQNEG--------IQVLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDRQI 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ P QI++ TPGR++DH+ ++ ++L LKML+LDEAD +L++GFR+D++ I++
Sbjct: 118 AALKKRP-QIIIGTPGRIMDHMRRRT---LKLADLKMLILDEADEMLNMGFREDIDTILE 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P +Q++LFSATMPKE++
Sbjct: 174 KVPEEKQTILFSATMPKEIL 193
>gi|1142710|gb|AAC50823.1| similar to DEAD box RNA helicases [Homo sapiens]
gi|1589113|prf||2210303A RNA helicase
Length = 875
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+ +KA+ GY T +Q + L G+D + A+TGTGK+ F LP I+
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTSLRSAVVFGGVDMNPQS 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP RQ+LLFSAT E + K TY+
Sbjct: 188 LLPAERQTLLFSATFSPE-IKKLASTYL 214
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ PL ++++ GY T +Q + +EG+D + A+TGTGK+ AF LP +
Sbjct: 19 FTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + P+ LIL PTRELA Q+ E++ + + GG +
Sbjct: 79 LMPLANTSASPARHPVRALILTPTRELADQV-YESVKRYSKQTPLRSAVVFGGVDIGPQK 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L C++LVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D+E I+
Sbjct: 138 EALRRG-CEVLVATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLERIIR 193
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ LLFSAT E+
Sbjct: 194 LLPAQRQGLLFSATFSNEI 212
>gi|13514831|ref|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo sapiens]
gi|76803554|sp|Q13206.2|DDX10_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
Full=DEAD box protein 10
gi|11414894|dbj|BAB18536.1| RNA helicase [Homo sapiens]
gi|60552874|gb|AAH91521.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
gi|62739421|gb|AAH93654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
gi|62739423|gb|AAH93656.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
gi|119587526|gb|EAW67122.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, isoform CRA_a [Homo
sapiens]
gi|189054819|dbj|BAG37650.1| unnamed protein product [Homo sapiens]
Length = 875
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E ++P KA+ GY MT +Q + L G+D + A+TGTGK+ AF LP ++
Sbjct: 5 FSELNLAPALAKAVAEMGYETMTPIQAQAIPQVLTGRDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK ++ST+ P+ L+L PTRELA Q+ AE + L + + + GG K
Sbjct: 65 LLKHENASTSPARHPVRALVLLPTRELADQV-AEQVKLYAKYTQLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 LELKKG-VEVLVATPGRLLDHIEAKNCV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 YLPKQRTTLLFSATFSPEI 198
>gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase [Neisseria meningitidis 053442]
gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
053442]
Length = 457
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|423617263|ref|ZP_17593097.1| hypothetical protein IIO_02589 [Bacillus cereus VD115]
gi|401255938|gb|EJR62153.1| hypothetical protein IIO_02589 [Bacillus cereus VD115]
Length = 442
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 117/201 (58%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + +S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPESSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L ++L+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEVLIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|339451980|ref|ZP_08655350.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc lactis KCTC 3528]
Length = 513
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 13/197 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + A+T GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I LI+ PTRELA Q A E + L + V + GG +
Sbjct: 62 NIDLDNKN--------IQALIVSPTRELAIQTADE-LKKLGYDKHVDVQVVFGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDHI K +V++ +K LVLDEAD +L++GF D+E I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHINRK---TVKIDQVKTLVLDEADEMLNMGFLDDIEAII 168
Query: 560 DCLPRRRQSLLFSATMP 576
P RQ+LLFSATMP
Sbjct: 169 KNTPADRQTLLFSATMP 185
>gi|384180400|ref|YP_005566162.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 436
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|385323932|ref|YP_005878371.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
Length = 457
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|81429227|ref|YP_396228.1| ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K]
gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
sakei 23K]
Length = 530
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 121/201 (60%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA++ AG+ + T +Q T+ L GKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ P I LI+ PTRELA Q E L ++ V + GG +
Sbjct: 62 NLDLDN--------PDIQALIISPTRELAIQTQEELYRLGRDRKA-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ P QILV TPGRLLDHI ++ V+L +K LVLDEAD +LD+GF D+E+I+
Sbjct: 113 IRSLKDHP-QILVGTPGRLLDHINRRT---VKLDHVKTLVLDEADEMLDMGFVDDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+P +RQ+LLFSAT+P ++
Sbjct: 169 KQVPEKRQTLLFSATLPAPIM 189
>gi|86157651|ref|YP_464436.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85774162|gb|ABC80999.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 628
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 123/204 (60%), Gaps = 13/204 (6%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S+ FD+ G+S +A+ GY + T VQ AT +GKD +V++KTGTGK+ AF +
Sbjct: 17 VSEASFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFTI 76
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E + + L++CPTRELA Q+A E AL K+ D +GV+T+ GG
Sbjct: 77 PILERIPDGRRKPSA--------LVMCPTRELAIQVAEEVTALAKHRD-LGVVTIYGGAS 127
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+L++ +I+V TPGR+ DHI K ++RL + + LDEAD +L++GF ++V
Sbjct: 128 MGDQLDKLKAG-AEIVVGTPGRIYDHIRRK---TLRLEEVMVCCLDEADEMLNMGFFEEV 183
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
I+D LP Q LLFSAT+P ++
Sbjct: 184 TRILDHLPADVQQLLFSATVPADI 207
>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
Length = 455
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
Length = 487
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 118/195 (60%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALT GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 28 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLEL 87
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + +SST+ + P+ +L+L PTRELA QI A +KN + L GG
Sbjct: 88 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNMDKQT 146
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 147 ADLRAG-CEIVVATVGRLLDHVKQK---NINLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 202
Query: 561 CLPRRRQSLLFSATM 575
LP++RQ+LLFSAT
Sbjct: 203 MLPKQRQTLLFSATF 217
>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 505
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 32 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91
Query: 441 VLKATSSSTT------------------QLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q V +L+L PTRELA Q+ A K+
Sbjct: 92 FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 207
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV+ P RQ++LFSAT+
Sbjct: 208 ADRMLDMGFIEDIETIVEATPESRQTMLFSATL 240
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ ++A+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
LMS2-1]
gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
gi|385829155|ref|YP_005866927.1| RNA helicase [Lactobacillus rhamnosus GG]
gi|385836364|ref|YP_005874139.1| DEAD/DEAH box helicase [Lactobacillus rhamnosus ATCC 8530]
gi|418071067|ref|ZP_12708341.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus R0011]
gi|421770133|ref|ZP_16206834.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP2]
gi|421772789|ref|ZP_16209442.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP3]
gi|423078246|ref|ZP_17066931.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus rhamnosus
ATCC 21052]
gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
LMS2-1]
gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
gi|355395856|gb|AER65286.1| DEAD/DEAH box helicase family protein [Lactobacillus rhamnosus ATCC
8530]
gi|357538561|gb|EHJ22581.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus R0011]
gi|357551850|gb|EHJ33633.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus rhamnosus
ATCC 21052]
gi|411182661|gb|EKS49806.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP2]
gi|411183203|gb|EKS50343.1| Cold-shock DEAD-box protein A [Lactobacillus rhamnosus LRHMDP3]
Length = 502
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ KA S I L++ PTRELA Q E L ++ I V + GG +
Sbjct: 62 HIDKADRS--------IQALVISPTRELAIQTQEELYRLGRDKK-IKVQAVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L P QI+V TPGR+LDHI +++L L LVLDEAD +LD+GF D+E IV
Sbjct: 113 IRQLADHP-QIVVGTPGRILDHIGRH---TLKLEHLDTLVLDEADEMLDMGFIDDIEKIV 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ+LLFSATMP ++
Sbjct: 169 EQMPTERQTLLFSATMPAAIM 189
>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 527
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 120/201 (59%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RFDE + I+A+ GY +MT +Q + LEGKD V +A+TGTGK+ AF +P ++
Sbjct: 4 RFDEMELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQ 63
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ V + +ILCPTRELA Q++ E K GI + + GG
Sbjct: 64 KI--------DPKVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L++ QI++ TPGR++DH+ K+ V+ + M+ LDEAD +L++GFR+D+E I+
Sbjct: 116 IRSLKAG-VQIVIGTPGRVMDHMRRKT---VKFDKVSMIALDEADEMLNMGFREDIETIL 171
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+P RQ+LLFSATMP+ ++
Sbjct: 172 KEMPEDRQTLLFSATMPQPIM 192
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L ++L+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEVLIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA + K H + + GG
Sbjct: 73 LLPLANTSASPARHPVRALILTPTRELADQVAANVQSYAK-HTALRSAVVFGGVDMNPQS 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQMLVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP RQ+LLFSAT E + K TY+
Sbjct: 188 LLPTERQTLLFSATFSPE-IKKLASTYL 214
>gi|406663218|ref|ZP_11071284.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
gi|405552735|gb|EKB48086.1| DEAD-box ATP-dependent RNA helicase CshA [Cecembia lonarensis LW9]
Length = 570
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GIS +KA+ GY + +Q ++ LEGKD + +A+TGTGK+ +F +P I+
Sbjct: 7 FSDLGISAEILKAVEDMGYTHPSTIQAQSIPFLLEGKDVIGQAQTGTGKTASFAIPIIDM 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V + + LILCPTRELA Q+ E + L K GI + GG
Sbjct: 67 VDASFNKPQA--------LILCPTRELAVQVEGEIVKLSKYKRGISSTCIYGGEAIDRQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L+ QI+V TPGR++DH++ + + L ++++VLDEAD +LD+GFR D+ENI+
Sbjct: 119 KSLKKG-VQIVVGTPGRIMDHMDRGT---LNLEHVRIIVLDEADEMLDMGFRDDIENILS 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
P RQ++ FSATMPK ++
Sbjct: 175 DCPEERQTVFFSATMPKPIM 194
>gi|410971865|ref|XP_004001580.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX10 [Felis catus]
Length = 881
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 137/251 (54%), Gaps = 23/251 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKV-----SKYNIYVFVLVL 614
+ LP++RQ+LLFSAT K + + S++ P V +KY +
Sbjct: 241 ENLPKKRQTLLFSATQTKS---------VKDLARLSLKNPEYVWVHEKAKYRAMLXXXXX 291
Query: 615 SIKIQAFYIIC 625
++ YI+C
Sbjct: 292 XXTLEQNYIVC 302
>gi|423711385|ref|ZP_17685705.1| hypothetical protein MCQ_00432 [Bartonella washoensis Sb944nv]
gi|395415299|gb|EJF81734.1| hypothetical protein MCQ_00432 [Bartonella washoensis Sb944nv]
Length = 467
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 119/201 (59%), Gaps = 10/201 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+LP +
Sbjct: 6 KSFDDLGLSEKVIKAVKSAGYTIPTPIQSGTIPHVLQRKDVLGIAQTGTGKTASFVLPML 65
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ K + + LIL PTRELA+Q+ NH + V L+GG F+
Sbjct: 66 TLLEKGRARARMP-----RTLILEPTRELAAQVEENFDKYGINHR-VNVALLIGGVSFEH 119
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF D+E I
Sbjct: 120 QERKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGFIPDIERI 175
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 176 CKLTPFTRQTLFFSATMAPEI 196
>gi|421563618|ref|ZP_16009435.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
gi|421907136|ref|ZP_16337023.1| ATP-dependent RNA helicase DBP2 [Neisseria meningitidis alpha704]
gi|393291750|emb|CCI73008.1| ATP-dependent RNA helicase DBP2 [Neisseria meningitidis alpha704]
gi|402340643|gb|EJU75842.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY + T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYEKPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSATM 575
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSATF 194
>gi|384945586|gb|AFI36398.1| putative ATP-dependent RNA helicase DDX10 [Macaca mulatta]
Length = 872
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TVSFHATDLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|62089354|dbj|BAD93121.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 variant [Homo sapiens]
Length = 845
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 80 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 139
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 140 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 194
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 195 AERINN--INILVCTPGRLLQHMDE--TVSFHATDLQMLVLDEADRILDMGFADTMNAVI 250
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 251 ENLPKKRQTLLFSATQTKSV 270
>gi|15677281|ref|NP_274434.1| ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|385338257|ref|YP_005892130.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|385852957|ref|YP_005899471.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|416161192|ref|ZP_11606298.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
gi|416169998|ref|ZP_11608264.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|416187306|ref|ZP_11614176.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|416196279|ref|ZP_11618049.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|418288600|ref|ZP_12901066.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
gi|421559613|ref|ZP_16005486.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|427826351|ref|ZP_18993406.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|433465367|ref|ZP_20422848.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|433473807|ref|ZP_20431167.1| helicase domain protein [Neisseria meningitidis 97021]
gi|433475839|ref|ZP_20433176.1| helicase domain protein [Neisseria meningitidis 88050]
gi|433479988|ref|ZP_20437277.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|433481376|ref|ZP_20438643.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|433484355|ref|ZP_20441579.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|433486626|ref|ZP_20443819.1| helicase domain protein [Neisseria meningitidis 97014]
gi|433488701|ref|ZP_20445861.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
gi|433490749|ref|ZP_20447871.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|433505294|ref|ZP_20462232.1| helicase domain protein [Neisseria meningitidis 9506]
gi|433507424|ref|ZP_20464330.1| helicase domain protein [Neisseria meningitidis 9757]
gi|433509527|ref|ZP_20466396.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|433511627|ref|ZP_20468451.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
gi|433513737|ref|ZP_20470526.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|433515890|ref|ZP_20472658.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|433517846|ref|ZP_20474591.1| helicase domain protein [Neisseria meningitidis 96023]
gi|433520192|ref|ZP_20476911.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|433524366|ref|ZP_20481025.1| helicase domain protein [Neisseria meningitidis 97020]
gi|433528489|ref|ZP_20485098.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|433530695|ref|ZP_20487280.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|433532958|ref|ZP_20489521.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|433534682|ref|ZP_20491222.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|433541270|ref|ZP_20497721.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|372201554|gb|EHP15466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
gi|402335412|gb|EJU70678.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|432202566|gb|ELK58625.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|432208948|gb|ELK64919.1| helicase domain protein [Neisseria meningitidis 88050]
gi|432209268|gb|ELK65237.1| helicase domain protein [Neisseria meningitidis 97021]
gi|432215726|gb|ELK71611.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|432218133|gb|ELK73996.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|432220286|gb|ELK76109.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|432221266|gb|ELK77078.1| helicase domain protein [Neisseria meningitidis 97014]
gi|432222780|gb|ELK78565.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
gi|432226933|gb|ELK82651.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|432240586|gb|ELK96120.1| helicase domain protein [Neisseria meningitidis 9506]
gi|432240698|gb|ELK96231.1| helicase domain protein [Neisseria meningitidis 9757]
gi|432246915|gb|ELL02361.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|432247023|gb|ELL02468.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
gi|432247046|gb|ELL02489.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|432252816|gb|ELL08166.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|432252963|gb|ELL08310.1| helicase domain protein [Neisseria meningitidis 96023]
gi|432253804|gb|ELL09141.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|432259010|gb|ELL14288.1| helicase domain protein [Neisseria meningitidis 97020]
gi|432265290|gb|ELL20486.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|432265960|gb|ELL21150.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|432266781|gb|ELL21963.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|432271424|gb|ELL26549.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|432276977|gb|ELL32027.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 492
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +QE + L+GKD + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK ++ST+ P+ L+L PTRELA Q+ AE + L H + + GG K
Sbjct: 65 MLKHENASTSPARHPVRALVLLPTRELAVQV-AEQVKLYAKHTNLRSAVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 LELKQG-VEVLVATPGRLLDHIEAKNTV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 YLPKQRITLLFSATFSPEI 198
>gi|30249765|ref|NP_841835.1| ATP-dependent RNA helicase protein [Nitrosomonas europaea ATCC
19718]
gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
ATCC 19718]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 127/225 (56%), Gaps = 22/225 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ + P +KA+ AAGY T +Q+ + + G D + A+TGTGK+ AF+LPA+
Sbjct: 3 FENLNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDVMASAQTGTGKTAAFMLPALHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ AT + P +L+L PTRELA Q++ A K I V++++GG + + Q
Sbjct: 63 L--ATPAQIRGRGP--RILVLTPTRELALQVSDAASKYGKFLPRINVVSILGGMPYPL-Q 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L S +LVATPGRL+DHIE + L+MLVLDEAD +LD+GF +DVE I
Sbjct: 118 NKLLSQTVDVLVATPGRLIDHIERG---RIDFSRLEMLVLDEADRMLDMGFIQDVERIAL 174
Query: 561 CLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
P RQ+LLFSAT+ PK + + +HT +D +
Sbjct: 175 STPATRQTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHI 219
>gi|374292881|ref|YP_005039916.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
gi|357424820|emb|CBS87699.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
Length = 456
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 121/202 (59%), Gaps = 13/202 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI-- 438
F E G+ PL +KAL A Y T VQ A + L+G+D + A+TGTGK+ AF+LP +
Sbjct: 3 FSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPTLTR 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
A L ++T + VL+L PTRELA Q+ A K + ++ +VGG ++
Sbjct: 63 TAELPLNGAATPR------VLVLAPTRELAKQVTDAARKYAKFMK-LNIVDVVGGMPYR- 114
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+Q RL S P +LV TPGRLLDH+ + + L +++L+LDEAD +LD+GF DVE I
Sbjct: 115 EQLRLLSRPVDVLVCTPGRLLDHVARR---RIALDEVEVLILDEADRMLDMGFLDDVETI 171
Query: 559 VDCLPRRRQSLLFSATMPKELV 580
C P RQ+LLF+AT+ + +
Sbjct: 172 AKCCPPTRQTLLFTATLDRRMA 193
>gi|407711798|ref|YP_006832363.1| ATP-independent RNA helicase DbpA [Burkholderia phenoliruptrix
BR3459a]
gi|407233982|gb|AFT84181.1| ATP-independent RNA helicase DbpA [Burkholderia phenoliruptrix
BR3459a]
Length = 467
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 119/207 (57%), Gaps = 12/207 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
PI + F + + + LT GY++MT +Q A+L L G D + +AKTG+GK+ AF
Sbjct: 4 PITAGAPFSQLPLPAAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAF 63
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L A+ A L A + + ++LCPTRELA Q+ E L + + I VLTL GG
Sbjct: 64 SL-ALLARLDARKFA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGG 115
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + LE I+V TPGR++DH+E S + L L LVLDEAD +LD+GF
Sbjct: 116 TPMRPQTASLEHG-AHIVVGTPGRIMDHLERGS---LPLQSLNTLVLDEADRMLDMGFFD 171
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELV 580
D+ +V P+ RQ+LLFSAT P+ +V
Sbjct: 172 DIATVVRQCPKERQTLLFSATYPEGIV 198
>gi|281208736|gb|EFA82911.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 698
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 119/199 (59%), Gaps = 7/199 (3%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ I T KA+ + +MT +Q T+ LEG+D + A+TG+GK++AFL+PAIE
Sbjct: 196 FNSLPIEEKTKKAIAEMKFTKMTPIQAKTIMPLLEGRDLLGAARTGSGKTLAFLIPAIEI 255
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++KA V+I+ PTRELA QI A L+ NH L + G + +
Sbjct: 256 LVKANFKPRNG----TGVIIISPTRELALQIYGVARELMLNHTQTHGLVIGGNNDKRAEI 311
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RLE +LV TPGRLLDH++N G V+ LK LV+DEAD +L++GF +D+ IV
Sbjct: 312 ERLEKG-VNLLVCTPGRLLDHLQNTRGFIVK--NLKCLVIDEADRILEVGFEEDMHQIVK 368
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ RQ++LFSAT +++
Sbjct: 369 LLPKERQTMLFSATQTRKV 387
>gi|421476562|ref|ZP_15924439.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400228098|gb|EJO58055.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 505
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 32 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91
Query: 441 VLKATSSSTT------------------QLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q V +L+L PTRELA Q+ A K+
Sbjct: 92 FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 207
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV+ P RQ++LFSAT+
Sbjct: 208 ADRMLDMGFIEDIETIVEATPESRQTMLFSATL 240
>gi|395839602|ref|XP_003792676.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Otolemur garnettii]
Length = 675
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 195 TLKAIKEMGFTNMTEIQHKSIKPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 249
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L + GG+ + ++L S+
Sbjct: 250 -KFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLVM-GGSNRSAEAQKL-SNG 306
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 307 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 364
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 365 TMLFSATQTRKVEDLARISLKKEPLYV 391
>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 506
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 32 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91
Query: 441 VLKATSSSTT------------------QLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q V +L+L PTRELA Q+ A K+
Sbjct: 92 FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 207
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV+ P RQ++LFSAT+
Sbjct: 208 ADRMLDMGFIEDIETIVEATPESRQTMLFSATL 240
>gi|404320397|ref|ZP_10968330.1| DEAD/DEAH box helicase [Ochrobactrum anthropi CTS-325]
Length = 484
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 116/199 (58%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP + A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVLAAVEAAGYSAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ NH + V L+GG F +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVEENFTKYGVNHR-LNVALLIGGVSFDEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRLLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275]
Length = 489
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 119/195 (61%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSATM 575
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSATF 194
>gi|417405074|gb|JAA49262.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 877
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 9/201 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
KRF + IS T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +
Sbjct: 69 KRFSDFPISKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVL 128
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
EA+ + +S L VLI+ PTRELA Q + KNHD L ++GG K
Sbjct: 129 EALYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKH 183
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I
Sbjct: 184 EAERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAI 239
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
++ LP++RQ+LLFSAT K +
Sbjct: 240 IENLPKKRQTLLFSATQTKSV 260
>gi|218768426|ref|YP_002342938.1| ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|421540667|ref|ZP_15986811.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|421555017|ref|ZP_16000956.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
gi|402318562|gb|EJU54081.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|402332170|gb|EJU67501.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|423587115|ref|ZP_17563202.1| hypothetical protein IIE_02527 [Bacillus cereus VD045]
gi|423642524|ref|ZP_17618142.1| hypothetical protein IK9_02469 [Bacillus cereus VD166]
gi|401229005|gb|EJR35524.1| hypothetical protein IIE_02527 [Bacillus cereus VD045]
gi|401276579|gb|EJR82530.1| hypothetical protein IK9_02469 [Bacillus cereus VD166]
Length = 458
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 559
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 16/225 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI ++ L G T VQ+ ++ ++GKD + +A+TGTGK++AF+LP ++
Sbjct: 4 FQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQQ 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVD 499
+ + P LI+ PTRELA QI EA L DGI +L + GG +
Sbjct: 64 I------DPKRAYP--QALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQ 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+LE +++ TPGRLLDH+ + + L G+K LVLDEAD +L +GF DVE ++
Sbjct: 116 LRKLEGG-RHLIIGTPGRLLDHLRRGT---LELGGVKQLVLDEADQMLHMGFLDDVEALI 171
Query: 560 DCLPRRRQSLLFSATMP---KELVLKREHTYIDTVGLGSVETPVK 601
LP RRQ++LFSATMP K+L + +D V G+ P++
Sbjct: 172 HALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLE 216
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ ++A+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 103 FDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 162
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 163 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 221
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 222 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 277
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 278 LLPKERQTLLFSATFSPE-IKKLASTYL 304
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 9/202 (4%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ +K F E G ++ ++ GY+ T +Q + LEG+D + A+TGTGK+ AF L
Sbjct: 1 MDKKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT--LVGG 493
P + ++ S ST+ P+ +L+L PTRELA QI+ IA DG+ + T + GG
Sbjct: 61 PLLNRMIPKASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAY---ADGLPLRTSLIYGG 117
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
F + L I++ATPGRLLDH+E + ++ L ++ L+LDEAD +LD+GF
Sbjct: 118 VDFNAQKLELMRG-ADIVIATPGRLLDHVEQR---TINLNQVEFLILDEADRMLDMGFMP 173
Query: 554 DVENIVDCLPRRRQSLLFSATM 575
D+ I+ LP RRQSLL+SAT
Sbjct: 174 DLLKILAQLPSRRQSLLYSATF 195
>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
Length = 524
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 126/213 (59%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 40 FASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 99
Query: 440 -AVLKAT------------SSSTTQLVP-PIY---VLILCPTRELASQIAAEAIALLKNH 482
A L+ T S+ Q P P+ +L+L PTRELA Q+ A K+
Sbjct: 100 FAQLQKTQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 159
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 160 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 215
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 216 ADRMLDMGFIDDIETIVAATPASRQTMLFSATL 248
>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 546
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 117/195 (60%), Gaps = 9/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E ++P +KA+ GY + T +QE + + G D + A+TG+GK+ AF+LPA+
Sbjct: 3 FEELNLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDLMASAQTGSGKTAAFILPALNR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ AT S+ P VL+L PTRELA Q+ A KN +++++GG + V Q
Sbjct: 63 L--ATPSAMPGKGP--RVLVLTPTRELAQQVCDAATKYGKNMR-FKIISILGGMPYPV-Q 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL S ILVATPGRL+DH+E + L+ML+LDEAD +LD+GF DVE I
Sbjct: 117 NRLLSSHVDILVATPGRLIDHLERG---RIDFSRLEMLILDEADRMLDMGFVDDVERIAA 173
Query: 561 CLPRRRQSLLFSATM 575
P RQ+LLFSAT+
Sbjct: 174 ATPATRQTLLFSATL 188
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S +KA+ +GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 19 FDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ L+L PTRELA Q+AA + H + + GG
Sbjct: 79 LLPTANTSASPARHPVRALMLTPTRELADQVAAN-VQTYSKHTPLRSTVVFGGVDMNPQS 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K +V L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 138 DALRRG-VEILIATPGRLLDHVQQK---TVNLGQVQMLVLDEADRMLDMGFLPDLQRILN 193
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ Q+LLFSAT E + K TY+
Sbjct: 194 LLPKECQTLLFSATFSAE-IKKLASTYL 220
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 126/202 (62%), Gaps = 14/202 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S ++AL GY + T +Q + LEG+D + A+TGTGK+ AF+LP+I+
Sbjct: 6 FDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD---GIGVLTLVGGTRFK 497
+ +A + + + +L+L PTRELA QIA A K++ G+ V ++VGGT
Sbjct: 66 LREADNQTPFKSC---RMLVLAPTRELAGQIAQSA----KDYGAMAGLKVHSIVGGTSVG 118
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
D+ +L ILVATPGRLLD I+ K+ +L +++LVLDEAD +LDLGF +
Sbjct: 119 KDRNKLHRG-TDILVATPGRLLDLIDQKA---FKLNAVEILVLDEADQMLDLGFIHALRQ 174
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I D +P RQ+L FSATMPK++
Sbjct: 175 INDLVPAERQTLFFSATMPKQI 196
>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
Length = 458
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|359322003|ref|XP_533327.3| PREDICTED: ATP-dependent RNA helicase DDX18 [Canis lupus
familiaris]
Length = 669
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 150/271 (55%), Gaps = 37/271 (13%)
Query: 339 EDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEE------PILSQKRFDECGISPL--- 389
ED+ D EE + + + NGEK + EE+ P+ F++ + L
Sbjct: 131 EDKGDSEEGTQ------APEETENNGEKPDDEEEDSEVPSLPLGLTGAFEDTSFASLSSL 184
Query: 390 ----TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 185 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK-- 242
Query: 446 SSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
+ +P VLIL PTRELA Q L+ H L ++GG+ + ++L
Sbjct: 243 ----LKFMPRNGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGL-IMGGSNRSAEAQKL 297
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
+ I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP
Sbjct: 298 -GNGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLP 354
Query: 564 RRRQSLLFSATMPKE------LVLKREHTYI 588
RRQ++LFSAT ++ + LK+E Y+
Sbjct: 355 TRRQTMLFSATQTRKVEDLARISLKKEPLYV 385
>gi|440747418|ref|ZP_20926677.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
gi|436484338|gb|ELP40342.1| Cold-shock DEAD-box protein A [Mariniradius saccharolyticus AK6]
Length = 607
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S ++A+ GY + +Q T+ LEGKD + +A+TGTGK+ AF +P I+
Sbjct: 7 FSDLGVSEEILRAVEDMGYTHPSPIQAQTIPMLLEGKDVIGQAQTGTGKTAAFAIPIIDQ 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V L P LILCPTRELA Q+ E + L K G+ + GG
Sbjct: 67 V-------DVTLYKP-QALILCPTRELAVQVEGEIVKLSKFKKGLSSTCIYGGDSMDRQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ Q++V TPGR++DH++ + ++L + ++VLDEAD +LD+GFR+D+E+I+
Sbjct: 119 RDLKKG-VQVVVGTPGRIMDHMDRGT---LKLDHVGIIVLDEADEMLDMGFREDIESILS 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
P RQ++ FSATMPK ++
Sbjct: 175 DCPEERQTVFFSATMPKPIL 194
>gi|421556917|ref|ZP_16002826.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|402335602|gb|EJU70866.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRHATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
13091]
gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
13091]
Length = 457
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 396
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 36 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 95
Query: 441 VLKATSSSTT------------------QLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q V +L+L PTRELA Q+ A K+
Sbjct: 96 FAQLQKAQAQQPRAPREPSNGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 155
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 156 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 211
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IVD P RQ++LFSAT+
Sbjct: 212 ADRMLDMGFIEDIETIVDATPESRQTMLFSATL 244
>gi|320586377|gb|EFW99056.1| dead box RNA helicase [Grosmannia clavigera kw1407]
Length = 613
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 131/233 (56%), Gaps = 23/233 (9%)
Query: 381 FDECGISPLTIKALTAA-GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+ G+ +++LT GY MT VQ AT++ L GKD V +AKTGTGK++AFL+P I+
Sbjct: 93 LESLGVHTNLVRSLTETLGYETMTPVQSATITPALSGKDIVAQAKTGTGKTLAFLVPVIQ 152
Query: 440 AVLKATSSSTTQLVPP---------IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
++ + L P I +IL PTRELA QI EA L G+ V T
Sbjct: 153 KMI----TENPNLAYPRRIRAKANDILAIILSPTRELAEQIGEEARKLCHG-TGVIVQTA 207
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENK-SGLSVRLMGLKMLVLDEADHLLDL 549
VGGTR + R C +++ATPGRL D + ++ SG+ L LVLDEAD +LD+
Sbjct: 208 VGGTRKREMLMRTRQQGCHLMIATPGRLNDILSDEMSGIDAPR--LAALVLDEADRMLDV 265
Query: 550 GFRKDVENIVDCLPRR----RQSLLFSATMPKELVLKREHTYIDTVGLGSVET 598
GF +++ IV LP R RQ+LLFSAT+PK V+ TY+D V+T
Sbjct: 266 GFDQELREIVRHLPNRSEQPRQTLLFSATLPKN-VISLARTYVDPTNFQFVQT 317
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 120/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 196 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 255
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+Q+ + I L I +VGG KV +
Sbjct: 256 LL-----FRPKRVPAIRVLILTPTRELAAQVHS-MIEKLAQFTDIRCCLIVGGLSTKVQE 309
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +L+LDEAD LL+LGF +++ ++
Sbjct: 310 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAILILDEADRLLELGFSAEIQELIR 366
Query: 561 CLPRRRQSLLFSATMPKEL 579
PRRRQ++LFSATM +E+
Sbjct: 367 MCPRRRQTMLFSATMTEEI 385
>gi|194212659|ref|XP_001499618.2| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Equus
caballus]
Length = 874
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
Length = 457
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|421542717|ref|ZP_15988823.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
gi|402316636|gb|EJU52178.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
Length = 457
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|395779999|ref|ZP_10460466.1| hypothetical protein MCW_00553 [Bartonella washoensis 085-0475]
gi|395419266|gb|EJF85566.1| hypothetical protein MCW_00553 [Bartonella washoensis 085-0475]
Length = 467
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 10/201 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+LP +
Sbjct: 6 KSFDDLGLSEKVIKAVKSAGYTVPTPIQSGTIPHVLQRKDVLGIAQTGTGKTASFVLPML 65
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ K + + LIL PTRELA+Q+ NH + + L+GG F+
Sbjct: 66 TLLEKGRARARMP-----RTLILEPTRELAAQVEENFDKYGINHR-VNIALLIGGVSFEH 119
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF D+E I
Sbjct: 120 QERKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGFIPDIERI 175
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 176 CKLTPFTRQTLFFSATMAPEI 196
>gi|421561398|ref|ZP_16007246.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153]
gi|402338861|gb|EJU74091.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
Length = 457
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|242022035|ref|XP_002431447.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212516735|gb|EEB18709.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 636
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 20/224 (8%)
Query: 375 ILSQKRFD--ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
ILS +F E + T+KA+ G+ MT +Q ++ LEG+D V AKTG+GK++A
Sbjct: 137 ILSDTKFSSLEGKVCENTLKAIVDMGFTTMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLA 196
Query: 433 FLLPAIEAVLKATSSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
FL+P +E + K + +P + +I+ PTREL+ Q L+K H L +
Sbjct: 197 FLIPVVELIYK------LKFLPRNGVGAIIISPTRELSMQTFGVLKELMKYHYHTYGL-V 249
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
+GG K + +L S ILVATPGRLLDH++N G + L+ LV+DEAD +LD+G
Sbjct: 250 IGGANRKAEAEKL-SKGINILVATPGRLLDHLQNTPGFLFK--NLQCLVIDEADRILDIG 306
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMP------KELVLKREHTYI 588
F ++++ I++ LP+RRQ++LFSAT +L LK+E Y+
Sbjct: 307 FEEELKQIINLLPKRRQTMLFSATTTAKTENLTKLALKKEPVYV 350
>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
Length = 511
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++AL+ GY T +Q + L GKD + A+TGTGK+ F LP I+
Sbjct: 32 FDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQR 91
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 92 LLPLANASASPARHPVRALMLTPTRELADQV-YDNVARYAKHTDLRSTVVFGGVDMNPQT 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 151 DALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQRIIN 206
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT E+
Sbjct: 207 LLPAQRQTLLFSATFSPEI 225
>gi|397516334|ref|XP_003828385.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Pan paniscus]
Length = 904
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 98 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 157
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 158 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 212
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 213 AERINN--INILVCTPGRLLQHMDE--TVSFHATDLQMLVLDEADRILDMGFADTMNAVI 268
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 269 ENLPKKRQTLLFSATQTKSV 288
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|354557827|ref|ZP_08977084.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353549501|gb|EHC18942.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 497
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 122/199 (61%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S + ++ G+ + T +QE T+ LEGKD + +A+TGTGK+ AF +P +E
Sbjct: 4 FRELGMSEQVLHSVENMGFEEATPIQEQTIPKALEGKDLIGQAQTGTGKTAAFGIPLVEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + QL ++L PTRELA Q+A E + + GI L + GG
Sbjct: 64 I----EAGAEQL----QGIVLSPTRELAVQVAEE-LNKIGQFKGIQTLPIYGGQEIDRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P QI+VATPGRL+DH+ K+ +RL +K++VLDEAD +L++GF +D+ I+
Sbjct: 115 RALKKRP-QIIVATPGRLMDHMRRKT---IRLSEIKIVVLDEADEMLNMGFVEDIHTILQ 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+ +
Sbjct: 171 EVPENRQTLLFSATMPRSI 189
>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
subflava NJ9703]
gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
subflava NJ9703]
Length = 463
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 118/195 (60%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALT GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 4 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + +SST+ + P+ +L+L PTRELA QI A +KN + L GG
Sbjct: 64 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNMDKQT 122
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 123 ADLRAG-CEIVVATVGRLLDHVKQK---NINLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 178
Query: 561 CLPRRRQSLLFSATM 575
LP++RQ+LLFSAT
Sbjct: 179 MLPKQRQTLLFSATF 193
>gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 652
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 123/204 (60%), Gaps = 13/204 (6%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S+ FD+ G+S +A+ GY + T VQ AT +GKD +V++KTGTGK+ AF +
Sbjct: 17 VSEASFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSI 76
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E + + L++CPTRELA Q+A E AL K+ D +GV+T+ GG
Sbjct: 77 PILERIPDGRRKPSA--------LVMCPTRELAIQVAEEVTALAKHRD-LGVVTIYGGAS 127
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+L++ +I+V TPGR+ DHI K ++RL + + LDEAD +L++GF ++V
Sbjct: 128 MGDQLDKLKAG-AEIVVGTPGRIYDHIRRK---TLRLEEVMVCCLDEADEMLNMGFFEEV 183
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
I+D LP Q LLFSAT+P ++
Sbjct: 184 TRILDHLPADVQQLLFSATVPADI 207
>gi|387902585|ref|YP_006332924.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577477|gb|AFJ86193.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 516
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY + T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 37 FASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 96
Query: 441 VLKATSSSTTQLVPP------------------IYVLILCPTRELASQIAAEAIALLKNH 482
+ S Q P +L+L PTRELA Q+ A K+
Sbjct: 97 FAQLQKSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKHL 156
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 157 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 212
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 213 ADRMLDMGFIDDIETIVAATPASRQTMLFSATL 245
>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 516
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 119/213 (55%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY + T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 37 FASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 96
Query: 441 VLKATSSSTTQLVPP------------------IYVLILCPTRELASQIAAEAIALLKNH 482
+ S Q P +L+L PTRELA Q+ A K+
Sbjct: 97 FAQLQKSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKHL 156
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 157 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 212
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 213 ADRMLDMGFIDDIETIVAATPASRQTMLFSATL 245
>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 447
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPECGD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|408674498|ref|YP_006874246.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856122|gb|AFK04219.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 576
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 122/205 (59%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ Q +F + +S ++A+ G+ T +Q + A L G D + +A+TGTGK+ AF +
Sbjct: 1 MEQVKFSDLPVSEYILRAVEEMGFEFSTPIQSQGIPAVLRGGDVIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAIEAV TQ VL++CPTRELA Q+ + L K G+ V + GG
Sbjct: 61 PAIEAV--DVEDKNTQ------VLVMCPTRELALQVKEQIQKLAKYKKGLHVAAIYGGES 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
++ L+ QI+V TPGR++DHI+ K+ + L +KM +LDEAD +L++GFR+D+
Sbjct: 113 YERQFLALKKG-VQIVVGTPGRIMDHIDRKT---LSLSSIKMAILDEADEMLNMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I+ P RQ++LFSATM E++
Sbjct: 169 EKILSYAPDERQTVLFSATMSPEIL 193
>gi|159113843|ref|XP_001707147.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
50803]
gi|157435250|gb|EDO79473.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
50803]
Length = 547
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 144/267 (53%), Gaps = 19/267 (7%)
Query: 361 NGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAV 420
+ G E + + I+++ F E +SP ++A+ A G+ MTR+QEA++ L G++
Sbjct: 11 SAEGGDTENAKYQEIMTETPFSETSLSPFLLEAVDAMGHKNMTRIQEASIPVILSGRNMT 70
Query: 421 VKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK 480
KA TG+GKS+AFLLPAI+ + KA +L V++L PTRELA Q+ A L+
Sbjct: 71 AKAHTGSGKSLAFLLPAIDLIHKA----NMKLHHGTGVIVLTPTRELALQLYNVATQLIS 126
Query: 481 NHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVL 540
+ I V +GGT + + L +++ATPGRL DH+ N G L ML+L
Sbjct: 127 ATN-ITVGLAIGGTSRQKEANHL-CKGASVVIATPGRLCDHLNNTPGFKTD--KLFMLIL 182
Query: 541 DEADHLLDLGFRKDVENIVDCL--PRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVET 598
DEAD LL+ GF++++E I+ L P+ RQ FSATM + L+ H +D L + T
Sbjct: 183 DEADMLLEYGFQQELEAILRMLPGPKLRQVCFFSATMSDK-CLEVPHMEVDKETLIRINT 241
Query: 599 PVKVSKYNIYVFVLVLSIKIQAFYIIC 625
VK S F + YIIC
Sbjct: 242 DVKSSAATRAHF--------EQGYIIC 260
>gi|385851000|ref|YP_005897515.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|416182708|ref|ZP_11612144.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|416213044|ref|ZP_11622090.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
Length = 457
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
Length = 463
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 118/195 (60%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALT GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 4 FSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + +SST+ + P+ +L+L PTRELA QI A +KN + L GG
Sbjct: 64 LKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLP-LRHTVLFGGVNMDKQT 122
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 123 ADLRAG-CEIVVATVGRLLDHVKQK---NINLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 178
Query: 561 CLPRRRQSLLFSATM 575
LP++RQ+LLFSAT
Sbjct: 179 MLPKQRQTLLFSATF 193
>gi|242032643|ref|XP_002463716.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
gi|241917570|gb|EER90714.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
Length = 623
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 130/212 (61%), Gaps = 22/212 (10%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
ILS K F E IS LT KA+ Y +T++Q ++ LEGKD + AKTG+GK++AFL
Sbjct: 123 ILSNKLFSELPISELTAKAIREMNYTHLTQIQARSIPHLLEGKDVMGAAKTGSGKTLAFL 182
Query: 435 LPAIEAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
+PAIE + L+ +S + T V+++CPTRELA Q A L+K H + ++G
Sbjct: 183 IPAIELLYHLRFSSRNGTG------VIVVCPTRELAIQTHNVAKELMKYHSQT-LGYVIG 235
Query: 493 GTRFKVDQRRLESDP----CQILVATPGRLLDHIEN-KSGLSVRLMGLKMLVLDEADHLL 547
G + RR E+D +LVATPGRLLDH++N KS + R LK LV+DEAD +L
Sbjct: 236 G-----NNRRSEADQLAKGVNLLVATPGRLLDHLQNTKSFIYKR---LKCLVIDEADRIL 287
Query: 548 DLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
+ F +D++ I LP+ RQ++LFSAT E+
Sbjct: 288 EQNFEEDMKQIFKRLPQNRQTVLFSATQTPEV 319
>gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
Length = 651
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 123/204 (60%), Gaps = 13/204 (6%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S+ FD+ G+S +A+ GY + T VQ AT +GKD +V++KTGTGK+ AF +
Sbjct: 17 VSEASFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSI 76
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E + + L++CPTRELA Q+A E AL K+ D +GV+T+ GG
Sbjct: 77 PILERIPDGRRKPSA--------LVMCPTRELAIQVAEEVTALAKHRD-LGVVTIYGGAS 127
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+L++ +I+V TPGR+ DHI K ++RL + + LDEAD +L++GF ++V
Sbjct: 128 MGDQLDKLKAG-AEIVVGTPGRIYDHIRRK---TLRLEEVMVCCLDEADEMLNMGFFEEV 183
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
I+D LP Q LLFSAT+P ++
Sbjct: 184 TRILDHLPADVQQLLFSATVPADI 207
>gi|421538358|ref|ZP_15984535.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
gi|402317177|gb|EJU52716.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
Length = 457
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 118/195 (60%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSATM 575
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSATF 194
>gi|388583939|gb|EIM24240.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 795
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 124/197 (62%), Gaps = 11/197 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E IS + K L A G+++MT +Q AT L+GKD V A+TG+GK++++L+P +E+
Sbjct: 88 FNELPISNQSKKGLKANGFVKMTEIQSATTHLALKGKDLVGSARTGSGKTLSYLVPMLES 147
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K S+T L L++ PTRELA QI + + + NH L+GG + ++
Sbjct: 148 LYKDKWSNTDGL----GALVVAPTRELALQI-FKVLHSIGNHHSFSAGLLIGGKNVQQEK 202
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
RL + IL+ATPGRLL H++ G + LK+L+LDEAD +LDLGF+K ++ I++
Sbjct: 203 TRL--NRMNILIATPGRLLQHMDETYGFNAD--NLKLLILDEADRILDLGFQKTIQAILE 258
Query: 561 CLP--RRRQSLLFSATM 575
LP RQ+LLFSAT+
Sbjct: 259 QLPPTHTRQNLLFSATI 275
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ PL ++++ GY T +Q + +EG+D + A+TGTGK+ AF LP +
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + P+ LIL PTRELA Q+ E++ + + GG +
Sbjct: 80 LMPLANTSASPARHPVRALILTPTRELADQV-YESVKRYSKQTPLRSAVVFGGVDIGPQK 138
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L C++LVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D+E I+
Sbjct: 139 EALRRG-CEVLVATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLERIIR 194
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ LLFSAT E+
Sbjct: 195 LLPAQRQGLLFSATFSNEI 213
>gi|433494943|ref|ZP_20452010.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|432229591|gb|ELK85276.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
Length = 457
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|366087286|ref|ZP_09453771.1| ATP-dependent RNA helicase [Lactobacillus zeae KCTC 3804]
Length = 502
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ KA S I L++ PTRELA Q E L ++ I V + GG +
Sbjct: 62 HIDKADRS--------IQALVISPTRELAIQTQEELYRLGRDKK-IKVQAVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L P QI+V TPGR+LDHI +++L L LVLDEAD +LD+GF D+E IV
Sbjct: 113 IRQLADHP-QIVVGTPGRILDHIGRH---TLKLEHLDTLVLDEADEMLDMGFIDDIEKIV 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ+LLFSATMP ++
Sbjct: 169 EQMPTERQTLLFSATMPAAIM 189
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
Length = 522
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 119/198 (60%), Gaps = 11/198 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
++F IS + I AL G+ + T +QE ++ LEG D + +A+TGTGK+ A+ +P +
Sbjct: 7 EKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAYGIPVL 66
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E +L A + Q V IL PTRELA Q+ AE I L + + L + GG +
Sbjct: 67 EKILAAGAPKELQSV------ILSPTRELAIQV-AEEINHLAQYTPVQALPIYGGQDMER 119
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
RRL P QI+VATPGRL+DH+ K G +V+L + +VLDEAD +L++GF D+ I
Sbjct: 120 QLRRLRKSP-QIIVATPGRLIDHM--KRG-TVKLSSISTIVLDEADEMLNMGFIDDINLI 175
Query: 559 VDCLPRRRQSLLFSATMP 576
+ P RQ+LLFSATMP
Sbjct: 176 MSATPETRQTLLFSATMP 193
>gi|291383932|ref|XP_002708524.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Oryctolagus
cuniculus]
Length = 872
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 241 ENLPKKRQTLLFSATQTK 258
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|385821240|ref|YP_005857627.1| DEAD/DEAH box helicase [Lactobacillus casei LC2W]
gi|385824432|ref|YP_005860774.1| DEAD/DEAH box helicase [Lactobacillus casei BD-II]
gi|409998335|ref|YP_006752736.1| DEAD/DEAH box helicase [Lactobacillus casei W56]
gi|417981730|ref|ZP_12622394.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|417984551|ref|ZP_12625171.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|417987806|ref|ZP_12628359.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|417997288|ref|ZP_12637547.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|418000194|ref|ZP_12640390.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|418003339|ref|ZP_12643426.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|418006207|ref|ZP_12646168.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|418008368|ref|ZP_12648235.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|418011933|ref|ZP_12651680.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|418013012|ref|ZP_12652674.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
gi|406359347|emb|CCK23617.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus casei W56]
gi|410521133|gb|EKP96098.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|410522198|gb|EKP97147.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|410525109|gb|EKQ00016.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|410533048|gb|EKQ07736.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|410537114|gb|EKQ11693.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|410542456|gb|EKQ16903.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|410544369|gb|EKQ18698.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|410547046|gb|EKQ21289.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|410551341|gb|EKQ25407.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|410556209|gb|EKQ30122.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
Length = 502
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +Q T+ L GKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ KA S I L++ PTRELA Q E + L I V + GG +
Sbjct: 62 NIDKADRS--------IQALVISPTRELAIQ-TQEELYRLGQDKKIKVQAVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L P QI+V TPGR+LDHI + ++L LK+LVLDEAD +LD+GF D+E IV
Sbjct: 113 IRQLSEHP-QIVVGTPGRILDHIGRHT---LKLQNLKVLVLDEADEMLDMGFIDDIEKIV 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ+LLFSAT+P ++
Sbjct: 169 EQMPTARQTLLFSATIPASIM 189
>gi|426370364|ref|XP_004052135.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Gorilla
gorilla gorilla]
Length = 846
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 44 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 103
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 104 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 158
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 159 AERINN--INILVCTPGRLLQHMD--ETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 214
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 215 ENLPKKRQTLLFSATQTKSV 234
>gi|421544742|ref|ZP_15990815.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|421546826|ref|ZP_15992870.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|421553040|ref|ZP_15999010.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|402322603|gb|EJU58058.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|402322655|gb|EJU58106.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|402329613|gb|EJU64970.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
Length = 457
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 120/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 226 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 285
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+Q+ + I L I +VGG KV +
Sbjct: 286 LL-----FRPKRVPAIRVLILTPTRELAAQVHS-MIEKLAQFTDIRCCLIVGGLSTKVQE 339
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +L+LDEAD LL+LGF +++ ++
Sbjct: 340 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAILILDEADRLLELGFSAEIQELIR 396
Query: 561 CLPRRRQSLLFSATMPKEL 579
PRRRQ++LFSATM +E+
Sbjct: 397 MCPRRRQTMLFSATMTEEI 415
>gi|417994179|ref|ZP_12634513.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
gi|410530495|gb|EKQ05268.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
Length = 502
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +Q T+ L GKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ KA S I L++ PTRELA Q E + L I V + GG +
Sbjct: 62 NIDKADRS--------IQALVISPTRELAIQ-TQEELYRLGQDKKIKVQAVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L P QI+V TPGR+LDHI + ++L LK+LVLDEAD +LD+GF D+E IV
Sbjct: 113 IRQLSEHP-QIVVGTPGRILDHIGRHT---LKLQNLKVLVLDEADEMLDMGFIDDIEKIV 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ+LLFSAT+P ++
Sbjct: 169 EQMPTARQTLLFSATIPASIM 189
>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|389853567|ref|YP_006355811.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 551
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +K LT GY Q T +QE T+ LEG+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ P I L++ PTRELA Q E K+ G+ V T+ GG+ +
Sbjct: 62 KINAEN--------PAIQALVIAPTRELAVQGQEELFRFGKSK-GLKVRTVFGGSSIEKQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGRL+D I+ K +++L L+ L+LDEAD +L++GF +D+ I+
Sbjct: 113 IKGLKAG-AHIVVGTPGRLVDLIKRK---AIKLDQLETLILDEADEMLNMGFLEDIHFII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSATMP ++
Sbjct: 169 EKTPENRQTLLFSATMPADI 188
>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 371
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 115/195 (58%), Gaps = 13/195 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GISP I L +G T +Q+ T+ L GKD + +A+TGTGK++AFLLP E
Sbjct: 3 FKTLGISPEMINHLKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLFE- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
K +S S P I L+L PTRELA QI EA L IG+L + GG +
Sbjct: 62 --KLSSKS-----PNIQALVLSPTRELAIQITQEA-KKLAEAKAIGILPIYGGQDTAMQL 113
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L P +++ATPGRLLDHI K S+ L VLDEAD +L +GF+ DVE+I
Sbjct: 114 KKL-GKPVHLVIATPGRLLDHIGRK---SIDLSKTTTFVLDEADQMLLMGFKNDVESITK 169
Query: 561 CLPRRRQSLLFSATM 575
LP++RQ+L FSATM
Sbjct: 170 QLPKKRQTLCFSATM 184
>gi|417990847|ref|ZP_12631309.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
gi|410533506|gb|EKQ08184.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
Length = 502
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +Q T+ L GKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ KA S I L++ PTRELA Q E + L I V + GG +
Sbjct: 62 NIDKADRS--------IQALVISPTRELAIQ-TQEELYRLGQDKKIKVQAVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L P QI+V TPGR+LDHI + ++L LK+LVLDEAD +LD+GF D+E IV
Sbjct: 113 IRQLSEHP-QIVVGTPGRILDHIGRHT---LKLQNLKVLVLDEADEMLDMGFIDDIEKIV 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ+LLFSAT+P ++
Sbjct: 169 EQMPTARQTLLFSATIPASIM 189
>gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 630
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 122/219 (55%), Gaps = 28/219 (12%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + ALTAAGY T VQ+ + A L G+D +V + TG+GK+ AF+LPAIE
Sbjct: 133 FIALGLSPEIVSALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIER 192
Query: 441 VLKATSSSTT------------------------QLVPPIYVLILCPTRELASQIAAEAI 476
+ + T Q V +L+L PTRELA Q+ A
Sbjct: 193 FAQMQKAGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTAAT 252
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
K+ + ++++GG + L +P +ILVATPGRL+DH+E + L L+
Sbjct: 253 TYGKHLRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLIDHLERG---RIDLSQLQ 308
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
MLVLDEAD +LD+GF +D+E I+D P RQ+LLFSAT+
Sbjct: 309 MLVLDEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATL 347
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G++ +KA+ GY T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 13 FDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGGVDMNPQM 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQ+LLFSAT E + K TY+
Sbjct: 188 LLPKERQTLLFSATFSPE-IKKLASTYL 214
>gi|402566171|ref|YP_006615516.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247368|gb|AFQ47822.1| DEAD/DEAH box helicase-like protein [Burkholderia cepacia GG4]
Length = 515
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 122/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY + T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97
Query: 440 -AVLKATSSST----------------TQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIDDIETIVAATPESRQTMLFSATL 246
>gi|390449448|ref|ZP_10235054.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
gi|389664141|gb|EIM75649.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
Length = 470
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S + A+ AGY Q T +Q + L GKD + A+TGTGK+ +F+LP +
Sbjct: 3 FSDLGLSQKVLSAVADAGYTQPTPIQAGAIPHALTGKDVLGIAQTGTGKTASFVLPMLTR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + + LIL PTRELA+Q+ + KNH + + L+GG F +
Sbjct: 63 LERGRARARMP-----RTLILEPTRELAAQVEENFVKYGKNHR-LNIALLIGGVSFDEQE 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 117 KKLERG-ADVLIATPGRLLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 172
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATMP E+
Sbjct: 173 LIPFTRQTLFFSATMPPEIT 192
>gi|384186458|ref|YP_005572354.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 455
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 2 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 62 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 114 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 169
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 170 LDETPGSKQTMLFSATMPKDI 190
>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
Length = 523
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 120/213 (56%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 48 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 107
Query: 441 VLKATSSSTTQLVPP------------------IYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q P +L+L PTRELA Q+ A K+
Sbjct: 108 FAQLQKAHAQQPRAPREAGQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 167
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 168 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 223
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D+E IV P RQ++LFSAT+
Sbjct: 224 ADRMLDMGFIDDIETIVAATPASRQTMLFSATL 256
>gi|183396419|gb|ACC62099.1| ATP-dependent RNA helicase DDX18 (predicted) [Rhinolophus
ferrumequinum]
Length = 730
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PAIE ++K
Sbjct: 250 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAIELIVK------ 303
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 304 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 361
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 362 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPIRRQ 419
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 420 TMLFSATQTRKVEDLARISLKKEPLYV 446
>gi|349603726|gb|AEP99487.1| putative ATP-dependent RNA helicase DDX10-like protein, partial
[Equus caballus]
Length = 828
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 24 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 83
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 84 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 138
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 139 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 194
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 195 ENLPKKRQTLLFSATQTK 212
>gi|410671976|ref|YP_006924347.1| DEAD/DEAH box helicase domain protein [Methanolobus psychrophilus
R15]
gi|409171104|gb|AFV24979.1| DEAD/DEAH box helicase domain protein [Methanolobus psychrophilus
R15]
Length = 434
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 126/202 (62%), Gaps = 16/202 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + ++ +K++ GYI+ T +Q + ++GKD + +A+TGTGK+ AF +P +E
Sbjct: 8 FKDLNLTKGVLKSIKVMGYIEPTEIQVQAIPLIMQGKDIIGQARTGTGKTAAFGIPLVEM 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEA--IALLKNHDGIGVLTLVGGTRFKV 498
V + + + ++LCPTRELA QIA E IALL +G+ + + GG
Sbjct: 68 VDQKKRA--------LQAMVLCPTRELAVQIADELKKIALLT--EGLSITAIYGGRAMGQ 117
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ LES QI+V TPGR++DHI+ + + + ++++VLDEAD +L++GFR+D+E +
Sbjct: 118 QTQELESG-TQIVVGTPGRVIDHIQRGA---INMDSIRIMVLDEADEMLNMGFREDIEKV 173
Query: 559 VDCLPRRRQSLLFSATMPKELV 580
++ P RQ+LLFSATMPK ++
Sbjct: 174 LELTPGERQTLLFSATMPKTIL 195
>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 489
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +Q + L GKD + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK SSST+ P+ L+L PTRELA Q+ A+ IAL + + + GG K
Sbjct: 65 LLKHESSSTSPARHPVRALVLLPTRELADQV-AQQIALYAKYTKLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 LELKKG-VEVLVATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 YLPKQRTTLLFSATFSPEI 198
>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
SK11]
gi|385837379|ref|YP_005875009.1| cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|414073651|ref|YP_006998868.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
cremoris SK11]
gi|358748607|gb|AEU39586.1| Cold-shock DEAD-box protein A [Lactococcus lactis subsp. cremoris
A76]
gi|413973571|gb|AFW91035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 551
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +K LT GY Q T +QE T+ LEG+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ P I L++ PTRELA Q E K+ G+ V T+ GG+ +
Sbjct: 62 KINAEN--------PAIQALVIAPTRELAVQGQEELFRFGKSK-GLKVRTVFGGSSIEKQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGRL+D I+ K +++L L+ L+LDEAD +L++GF +D+ I+
Sbjct: 113 IKGLKAG-AHIVVGTPGRLVDLIKRK---AIKLDQLETLILDEADEMLNMGFLEDIHFII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSATMP ++
Sbjct: 169 EKTPENRQTLLFSATMPADI 188
>gi|73955178|ref|XP_536583.2| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Canis lupus
familiaris]
Length = 871
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 241 ENLPKKRQTLLFSATQTK 258
>gi|157818683|ref|NP_001100290.1| probable ATP-dependent RNA helicase DDX10 [Rattus norvegicus]
gi|149041670|gb|EDL95511.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 (predicted) [Rattus
norvegicus]
Length = 874
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 241 ENLPKKRQTLLFSATQTK 258
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 120/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E IS ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 177 FLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 236
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+Q+ + I L I +VGG KV +
Sbjct: 237 LL-----FRPKRVPAIRVLILTPTRELAAQVHS-MIEKLAQFTDIRCCLIVGGLPTKVQE 290
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S+P I+VATPGR++DH+ N LSV L L +L+LDEAD LL+LGF ++ ++
Sbjct: 291 VALRSNP-DIVVATPGRIIDHLRN--SLSVGLEDLAILILDEADRLLELGFSVEINELIR 347
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+RRQ++LFSATM +E+
Sbjct: 348 MCPKRRQTMLFSATMTEEI 366
>gi|334133814|ref|ZP_08507355.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
gi|333608571|gb|EGL19862.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF7]
Length = 434
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 113/197 (57%), Gaps = 13/197 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P K L +G T +Q+ L G D + +A+TGTGK++AFLLP +E
Sbjct: 5 FIDLGVRPELAKLLARSGVSDPTPIQQQALPVVFRGGDVIAQAQTGTGKTLAFLLPMLE- 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
T + LIL PTRELA QIAAEA A L GI VL GG +
Sbjct: 64 -------RTNPTRAEVQGLILTPTRELAIQIAAEA-AKLAPSLGINVLAAYGGQDVEKQL 115
Query: 501 RRLESDP-CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L S ++VATPGRLLDH+ S V L + MLVLDEAD +L +GF +VE I+
Sbjct: 116 RKLSSTGGVHLIVATPGRLLDHLRRGS---VALYKISMLVLDEADQMLHMGFLNEVEEII 172
Query: 560 DCLPRRRQSLLFSATMP 576
P+RRQ++LFSATMP
Sbjct: 173 AQTPQRRQTMLFSATMP 189
>gi|395236209|ref|ZP_10414407.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. Ag1]
gi|394729061|gb|EJF29072.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. Ag1]
Length = 457
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 139/248 (56%), Gaps = 27/248 (10%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTT 450
L+ GY +MT VQEA L A L GKD +AKTG+GK+ AF LL I+A T S
Sbjct: 18 LSELGYHEMTPVQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASQFLTQS--- 74
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
L+LCPTRELA Q+A E L + I +LTL GG F V + L+ P I
Sbjct: 75 --------LVLCPTRELADQVAKELRRLARYMPNIKILTLCGGQPFGVQRDSLQHAP-HI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRLLDH++ ++ V+L L+ LVLDEAD +LD+GF ++ ++ P +RQ+LL
Sbjct: 126 IVATPGRLLDHLKKET---VKLEALQTLVLDEADRMLDMGFADAIDEVIAHAPAKRQTLL 182
Query: 571 FSATMPKELV-----LKR--EHTYIDTVG-LGSVETPV-KVSKYNIYVFVLVLSIKIQAF 621
FSAT P + ++R + IDTV L SVE ++S+ +L L K Q
Sbjct: 183 FSATWPAAIAAISGRIQRDPQTIEIDTVDELPSVEQQFYEISRGGKIGLLLALLSKHQPA 242
Query: 622 YIICFVYT 629
+ F T
Sbjct: 243 SCVVFCNT 250
>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
51172]
gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
51172]
Length = 550
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 121/199 (60%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E IS T++A+ G+ + +QE T+ L+GKD + +A+TGTGK+ AF +P IE
Sbjct: 17 FKELYISEETLRAIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIPIIE- 75
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
K ++ TQ L+LCPTREL Q+A E L K H GI +L++ GGT+ V Q
Sbjct: 76 --KIEANGLTQ------ALVLCPTRELCIQVAKEIGNLAKYHTGIKILSVYGGTQI-VKQ 126
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ +I+V TPGRL+D + + ++L LK++VLDEAD + D+GFR D++ I+D
Sbjct: 127 IKALKKGVEIVVGTPGRLMDLMRRR---VLKLDNLKIVVLDEADEMFDMGFRDDMKFILD 183
Query: 561 CLPRRRQSLLFSATMPKEL 579
RQ+ FSATM KE+
Sbjct: 184 ATNDDRQTCFFSATMGKEI 202
>gi|380495144|emb|CCF32621.1| ATP-dependent RNA helicase MSS116, partial [Colletotrichum
higginsianum]
Length = 393
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 141/244 (57%), Gaps = 20/244 (8%)
Query: 380 RF-DECGISPLTIKALTA-AGYIQMTRVQEATLSACLEGK--DAVVKAKTGTGKSIAFLL 435
RF D G+SP I+A+T + M VQ ATL+ L K D +V+AKTGTGK+IAFLL
Sbjct: 58 RFADMVGVSPALIQAITQDLKFNHMMPVQAATLTELLPPKRGDCLVQAKTGTGKTIAFLL 117
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PAI+ ++ I +L++ PTRELA QIA EA ALL+ V +GGT
Sbjct: 118 PAIQTLITNNRGRGAG----ISLLVISPTRELAMQIAKEAQALLQRLPQYRVCIAIGGTN 173
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+++++ + C IL+ATPGRL+DH+ N + + L LVLDEAD LLD+GF +
Sbjct: 174 KDREEKQILNG-CDILIATPGRLIDHLSN-AYIKESFHQLDTLVLDEADRLLDMGFMPAL 231
Query: 556 ENIVDCLPRR----RQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKVSKY 605
++IV LP + RQ +LFSAT+ +VL + + +I T+ G T +V ++
Sbjct: 232 KDIVRALPDKAKTNRQGMLFSATIAAHVEQVAGIVLSKGYKFISTIPAGESNTHERVPQH 291
Query: 606 NIYV 609
+ V
Sbjct: 292 LVKV 295
>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 590
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 125/200 (62%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E G++ +KAL G+ + + +Q + A L+G D + +A+TGTGK+ AF +P +E
Sbjct: 9 FEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLER 68
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TSS+ Q LILCPTRELA Q++ E L K G+ + + GG
Sbjct: 69 I--DTSSNAVQ------ALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQI 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ I+V TPGR++DH+E ++ ++ ++M+VLDEAD +LD+GFR+D+E+I+
Sbjct: 121 RSLKKG-VHIVVGTPGRVMDHMERRT---LKFDEVRMMVLDEADEMLDMGFREDIESILA 176
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ++LFSATM K ++
Sbjct: 177 DMPEDRQTILFSATMSKPIM 196
>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
Length = 502
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +Q T+ L GKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFKELGLDYDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ KA S I L++ PTRELA Q E + L I V + GG +
Sbjct: 62 NIDKADRS--------IQALVISPTRELAIQ-TQEELYRLGQDKKIKVQAVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L P QI+V TPGR+LDHI + ++L LK+LVLDEAD +LD+GF D+E IV
Sbjct: 113 IRQLSEHP-QIVVGTPGRILDHIGRHT---LKLQNLKVLVLDEADEMLDMGFIDDIEKIV 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ+LLFSAT+P ++
Sbjct: 169 EQMPTARQTLLFSATIPASIM 189
>gi|395766742|ref|ZP_10447280.1| hypothetical protein MCS_00213 [Bartonella doshiae NCTC 12862]
gi|395415354|gb|EJF81788.1| hypothetical protein MCS_00213 [Bartonella doshiae NCTC 12862]
Length = 472
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 10/208 (4%)
Query: 372 EEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
+E I K FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+
Sbjct: 2 KEMISPLKNFDDLGLSAKVIKAVESAGYTAPTPIQSETIPHILQRKDVLGIAQTGTGKTA 61
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
+F+LP + + K + + +P LIL PTRELA+Q+ NH + V L+
Sbjct: 62 SFVLPMLTLLEKGRAKAR---MP--RTLILEPTRELAAQVEENFDKYGINHR-LNVALLI 115
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG F+ R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF
Sbjct: 116 GGVSFEQQDRKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGF 171
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579
D+E I P RQ+L FSATM E+
Sbjct: 172 IPDIERICKLTPFTRQTLFFSATMAPEI 199
>gi|346465817|gb|AEO32753.1| hypothetical protein [Amblyomma maculatum]
Length = 580
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/272 (37%), Positives = 157/272 (57%), Gaps = 33/272 (12%)
Query: 339 EDEHDFEEQ-VELIRKEISKNKLNGNGEKKEKREEEP---------ILSQKRFD--ECGI 386
EDE EEQ + + +E K+K + ++ + E EP +LS RF + +
Sbjct: 32 EDEMASEEQPTQDVLEEDDKDKGAVSADEAKAMETEPEPLPGTSFGVLSDTRFSSLQGKV 91
Query: 387 SPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV--LK 443
S T+KA+T G+ QMT +Q T+ LEG+D V AKTG+GK++AFL+PA+E + LK
Sbjct: 92 SEATLKAITETMGFKQMTEIQAKTIPHLLEGRDVVAAAKTGSGKTLAFLVPAVELLSKLK 151
Query: 444 ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD-GIGVLTLVGGTRFKVDQRR 502
+ T L++ PTRELA Q LL + +G+ ++GGT + + +
Sbjct: 152 FMPRNGTG------ALVIAPTRELAMQTFGVLQELLSGQNQTLGL--IMGGTNRQSEAAK 203
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L + +LVATPGRLLDH++N S + L+ L++DEAD +LD+GF ++++ I+ L
Sbjct: 204 L-AKGVNLLVATPGRLLDHLQNTSEFVYK--NLQCLIIDEADRILDIGFEEEMKQILRIL 260
Query: 563 PRRRQSLLFSATMPK------ELVLKREHTYI 588
P+RRQ++LFSAT+ K ++ LK E YI
Sbjct: 261 PKRRQTMLFSATLTKKTEDLVKVALKSEPLYI 292
>gi|345874413|ref|ZP_08826227.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
gi|417957560|ref|ZP_12600481.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343968096|gb|EGV36329.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343970686|gb|EGV38859.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
Length = 453
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 120/195 (61%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + AL+ GY Q T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 4 FASLGLGNEIVSALSEQGYEQPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 64 LKRYANASTSPAMHPVRMLVLTPTRELADQIDQNIRSYIKNLP-LRHTVLFGGVNMDNQT 122
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S C+I+VAT GRLLDHI+ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 123 KELRSG-CEIVVATVGRLLDHIKQK---NINLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 178
Query: 561 CLPRRRQSLLFSATM 575
LP++RQ+LLFSAT
Sbjct: 179 MLPKQRQTLLFSATF 193
>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
Length = 458
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + L GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase [Bacillus cereus B4264]
gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
gi|410674757|ref|YP_006927128.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452198800|ref|YP_007478881.1| ATP-dependent RNA helicase BA2475 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
B4264]
gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|409173886|gb|AFV18191.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus thuringiensis
Bt407]
gi|452104193|gb|AGG01133.1| ATP-dependent RNA helicase BA2475 [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 458
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q++LFSATMPK++
Sbjct: 173 LDETPGSKQTMLFSATMPKDI 193
>gi|407940452|ref|YP_006856093.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407898246|gb|AFU47455.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
Length = 490
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +Q + L G+D + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK +SST+ P+ L+L PTRELA Q+ A+ IAL H + + GG K
Sbjct: 65 LLKHENSSTSPARHPVRALVLLPTRELADQV-AQQIALYAKHTKLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 IELKKG-VEVLVATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 YLPKQRTTLLFSATFSPEI 198
>gi|421473380|ref|ZP_15921497.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400221128|gb|EJO51613.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 456
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 32 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 91
Query: 441 VLKATSSSTT------------------QLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q V +L+L PTRELA Q+ A K+
Sbjct: 92 FAQLQKAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 151
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 152 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 207
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV+ P RQ++LFSAT+
Sbjct: 208 ADRMLDMGFIEDIETIVEATPESRQTMLFSATL 240
>gi|426336942|ref|XP_004031710.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Gorilla gorilla
gorilla]
Length = 670
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 121/202 (59%), Gaps = 14/202 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G++ ++AL + GY + T +QE + ++GKD + A+TGTGK+ AF LP +
Sbjct: 18 FESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILHR 77
Query: 441 VLK---ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+ + A TT+ VL+L PTRELA+QI ++ H G V + GG ++
Sbjct: 78 LAENRIAPKPRTTR------VLVLSPTRELATQIG-DSFKAYGAHLGFRVAVIFGGVKYG 130
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+R L+ ILVA PGRLLDHI+ K+ + L ++LVLDEAD +LDLGF K +
Sbjct: 131 AQERALQQG-LDILVAAPGRLLDHIQQKN---LDLSSTEILVLDEADQMLDLGFIKPIRQ 186
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
IV +P +RQ+L FSATMP E+
Sbjct: 187 IVSRIPAKRQNLFFSATMPTEI 208
>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
Length = 484
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP + A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVLAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ E A + + V L+GG F +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVE-ENFAKYGINQRLNVALLIGGVSFDDQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRLLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|221640975|ref|YP_002527237.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides KD131]
gi|221161756|gb|ACM02736.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
KD131]
Length = 777
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 114/182 (62%), Gaps = 7/182 (3%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY +T VQEA L+ + G+DA+V A+TG+GK++AF + + +L+ P
Sbjct: 18 GYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTP--I 75
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
L + PTRELA Q+A E + L G + T VGG ++ ++R L+ I+V TPGR
Sbjct: 76 ALAIAPTRELALQVARE-LGWLYGEAGAHIATCVGGMDYRTERRALDRG-AHIVVGTPGR 133
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
L DHIE S + L GL+ +VLDEAD +LDLGFR+D+E I+ P R++L+FSAT+PK
Sbjct: 134 LRDHIERGS---LDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPK 190
Query: 578 EL 579
E+
Sbjct: 191 EI 192
>gi|410897405|ref|XP_003962189.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Takifugu
rubripes]
Length = 649
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 128/211 (60%), Gaps = 18/211 (8%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+S T+K + G+ QMT +Q T+ LEG+D + AKTG+GK++AFL+P IE + K
Sbjct: 164 VSESTLKGVKELGFEQMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPCIELIYK-- 221
Query: 446 SSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
+ +P V+IL PTRELA Q L+ +H L ++GG+ + +RL
Sbjct: 222 ----LKFMPRNGTGVVILSPTRELAMQTYGVLKELMTHHVHTYGL-IMGGSNRSAEAQRL 276
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
++ ILVATPGRLLDH++N G + L+ L++DEAD +L++GF ++++ I+ LP
Sbjct: 277 -ANGVNILVATPGRLLDHLQNTPGFMFK--NLQCLIIDEADRILEVGFEEELKQIIKLLP 333
Query: 564 RRRQSLLFSATMPK------ELVLKREHTYI 588
+RRQ+LLFSAT + + LK+E Y+
Sbjct: 334 KRRQTLLFSATQTRRVEDLARISLKKEPLYV 364
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+ +KA+ GY T +Q + L G+D + A+TGTGK+ F LP I+
Sbjct: 13 FDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQR 72
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+S + P+ LIL PTRELA Q+AA A K H + + GG
Sbjct: 73 LLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAK-HTSLRSAVVFGGVDMNPQS 131
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +IL+ATPGRLLDH++ K+ L +++LVLDEAD +LD+GF D++ I++
Sbjct: 132 AELRRG-VEILIATPGRLLDHVQQKTA---NLGQVQILVLDEADRMLDMGFLPDLQRILN 187
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP RQ+LLFSAT E + K TY+
Sbjct: 188 LLPAERQTLLFSATFSPE-IKKLASTYL 214
>gi|189491668|ref|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus musculus]
gi|76364168|sp|Q80Y44.2|DDX10_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
Full=DEAD box protein 10
Length = 875
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 241 ENLPKKRQTLLFSATQTK 258
>gi|114580554|ref|XP_515753.2| PREDICTED: ATP-dependent RNA helicase DDX18 isoform 3 [Pan
troglodytes]
gi|410222574|gb|JAA08506.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Pan troglodytes]
gi|410256514|gb|JAA16224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Pan troglodytes]
gi|410298538|gb|JAA27869.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Pan troglodytes]
gi|410336501|gb|JAA37197.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Pan troglodytes]
Length = 670
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|85708865|ref|ZP_01039931.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1]
gi|85690399|gb|EAQ30402.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1]
Length = 598
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 139/254 (54%), Gaps = 17/254 (6%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P +AL GY + T VQ A ++ G+D +V A+TG+GK++AF + + +L
Sbjct: 6 LPPAIGEALAERGYSEPTPVQAAAMAPDSAGRDLIVSAQTGSGKTVAFGIALAQDILDQI 65
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
S + Q P VL + PTRELA Q++ E + L G+ + T VGG ++R L S
Sbjct: 66 SGTPLQERP--LVLAIAPTRELALQVSRE-LGWLYAKAGLRIATCVGGMDASKERRALRS 122
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
P I+V TPGRL DH+E + + L GL +VLDEAD +LD+GFR+D+E I+D P
Sbjct: 123 GPA-IVVGTPGRLRDHLERGA---LDLSGLIGVVLDEADEMLDMGFREDLEEILDATPDT 178
Query: 566 RQSLLFSATMPKELVLKREHTYIDTV---------GLGSVE-TPVKVSKYNIYVFVLVLS 615
R++LLFSATMP+ +V + D + G G +E + V+ I V+ L
Sbjct: 179 RRTLLFSATMPQAIVRLAQKYQSDALRLSLGGKDRGHGDIEYQAITVAPSEIENAVVNLL 238
Query: 616 IKIQAFYIICFVYT 629
+A ICF T
Sbjct: 239 RFHEAESAICFCAT 252
>gi|429206711|ref|ZP_19197975.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Rhodobacter sp.
AKP1]
gi|428190297|gb|EKX58845.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Rhodobacter sp.
AKP1]
Length = 777
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 114/182 (62%), Gaps = 7/182 (3%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY +T VQEA L+ + G+DA+V A+TG+GK++AF + + +L+ P
Sbjct: 18 GYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTP--I 75
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
L + PTRELA Q+A E + L G + T VGG ++ ++R L+ I+V TPGR
Sbjct: 76 ALAIAPTRELALQVARE-LGWLYGEAGAHIATCVGGMDYRTERRTLDRG-AHIVVGTPGR 133
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
L DHIE S + L GL+ +VLDEAD +LDLGFR+D+E I+ P R++L+FSAT+PK
Sbjct: 134 LRDHIERGS---LDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPK 190
Query: 578 EL 579
E+
Sbjct: 191 EI 192
>gi|29351650|gb|AAH49261.1| Ddx10 protein, partial [Mus musculus]
Length = 891
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 86 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 145
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 146 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 200
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 201 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 256
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 257 ENLPKKRQTLLFSATQTKSV 276
>gi|374997699|ref|YP_004973198.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357216065|gb|AET70683.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 500
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 124/199 (62%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S I+++ G+ + T +QE T+ +EG+D + +A+TGTGK+ A+ +P IE
Sbjct: 4 FTDLGLSESIIRSIINMGFEETTPIQEQTIPIAMEGRDLIGQAQTGTGKTAAYGIPLIER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ + I ++L PTRELA Q+A E + + + I L + GG +
Sbjct: 64 IVGQSEH--------IQGIVLAPTRELAVQVAEE-LNKIGQYKRIHALPIYGGQGIEWQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+VATPGRL+DH+ K+ +RL +K+LVLDEAD +L++GF D+E I+
Sbjct: 115 RALKKRP-HIIVATPGRLMDHMRRKT---IRLNDIKILVLDEADEMLNMGFLDDIETILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+++
Sbjct: 171 EVPEERQTLLFSATMPRQI 189
>gi|385328676|ref|YP_005882979.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
Length = 457
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKSYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSAT 193
>gi|126460913|ref|YP_001042027.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides ATCC 17029]
gi|126102577|gb|ABN75255.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 793
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 114/182 (62%), Gaps = 7/182 (3%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY +T VQEA L+ + G+DA+V A+TG+GK++AF + + +L+ P
Sbjct: 34 GYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTP--I 91
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
L + PTRELA Q+A E + L G + T VGG ++ ++R L+ I+V TPGR
Sbjct: 92 ALAIAPTRELALQVARE-LGWLYGEAGAHIATCVGGMDYRTERRALDRG-AHIVVGTPGR 149
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
L DHIE S + L GL+ +VLDEAD +LDLGFR+D+E I+ P R++L+FSAT+PK
Sbjct: 150 LRDHIERGS---LDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPK 206
Query: 578 EL 579
E+
Sbjct: 207 EI 208
>gi|332559951|ref|ZP_08414273.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides WS8N]
gi|332277663|gb|EGJ22978.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides WS8N]
Length = 777
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 114/182 (62%), Gaps = 7/182 (3%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
GY +T VQEA L+ + G+DA+V A+TG+GK++AF + + +L+ P
Sbjct: 18 GYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTP--I 75
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
L + PTRELA Q+A E + L G + T VGG ++ ++R L+ I+V TPGR
Sbjct: 76 ALAIAPTRELALQVARE-LGWLYGEAGAHIATCVGGMDYRTERRALDRG-AHIVVGTPGR 133
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
L DHIE S + L GL+ +VLDEAD +LDLGFR+D+E I+ P R++L+FSAT+PK
Sbjct: 134 LRDHIERGS---LDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPK 190
Query: 578 EL 579
E+
Sbjct: 191 EI 192
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P ++A+ +GY T +Q+ + L G+D + A+TGTGK+ F LP ++
Sbjct: 3 FADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + S+ST+ P+ LIL PTRELA Q+ E++ + + + GG K
Sbjct: 63 LARHASTSTSPARHPVRALILAPTRELAMQV-FESVKTYSKYVPLRSTCIYGGVDMKPQI 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L + +I+VATPGRLLDH++ K +++L ++MLVLDEAD +LD+GF D+ I+D
Sbjct: 122 QDLRNG-IEIVVATPGRLLDHVQQK---TIQLGQVEMLVLDEADRMLDMGFIPDIRRILD 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQSLLFSAT E+
Sbjct: 178 LLPAARQSLLFSATFSDEI 196
>gi|420253402|ref|ZP_14756456.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398052204|gb|EJL44488.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 463
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 116/197 (58%), Gaps = 12/197 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S + LT GY++MT +Q A+L L G+D + +AKTG+GK+ AF L A+ A
Sbjct: 8 FSELPLSEAVLANLTQLGYVEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSL-ALLA 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L A S + + ++LCPTRELA Q+ E L + + I VLTL GGT +
Sbjct: 67 RLDARSYA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQT 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
LE I+V TPGR++DH+E S+ L L LVLDEAD +LD+GF D+ +
Sbjct: 120 ASLEHG-AHIVVGTPGRIMDHLERG---SLSLDALNTLVLDEADRMLDMGFFDDIAKVAR 175
Query: 561 CLPRRRQSLLFSATMPK 577
P+ RQ+LLFSAT P+
Sbjct: 176 QCPKERQTLLFSATYPE 192
>gi|339326719|ref|YP_004686412.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166876|gb|AEI77931.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 520
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++AL+ GY T +Q + L GKD + A+TGTGK+ F LP I+
Sbjct: 40 FDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQR 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 100 LLPLANASASPARHPVRALMLTPTRELADQV-YDNVARYAKHTDLRSTVVFGGVDMNPQT 158
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 159 DALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQRIIN 214
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 215 LLPAHRQTLLFSATFSPEI 233
>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Ralstonia eutropha H16]
Length = 520
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++AL+ GY T +Q + L GKD + A+TGTGK+ F LP I+
Sbjct: 40 FDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQR 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L ++S + P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 100 LLPLANASASPARHPVRALMLTPTRELADQV-YDNVARYAKHTDLRSTVVFGGVDMNPQT 158
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +ILVATPGRLLDH++ K SV L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 159 DALRRG-VEILVATPGRLLDHVQQK---SVNLSQVQMLVLDEADRMLDMGFLPDLQRIIN 214
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT E+
Sbjct: 215 LLPAHRQTLLFSATFSPEI 233
>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
Length = 924
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 133/222 (59%), Gaps = 16/222 (7%)
Query: 365 EKKEKR-----EEEP--ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK 417
E+KEK E+ P I+S K+F E +S ++A+++ + T +Q AT+ L G+
Sbjct: 321 ERKEKLKAAFFEQAPADIISSKQFTEMNLSRPLLRAISSLNFANATDIQAATIPPALMGR 380
Query: 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
D V AKTG+GK+ AFLLP +E +L ++ P VL+L PTRELA Q A
Sbjct: 381 DLVACAKTGSGKTAAFLLPVLERLLYRQKTN-----PASRVLVLSPTRELAVQCHAMGEK 435
Query: 478 LLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKM 537
L K D I + + GG K Q L + P ++VATPGRL+DH++N G L G+++
Sbjct: 436 LAKFTD-IRMSLICGGFSTKRQQAELRAHP-DVIVATPGRLIDHLQNSPGFD--LEGIEV 491
Query: 538 LVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
L++DEAD LL++GF+++V+ I+ RQ++LFSATM E+
Sbjct: 492 LIMDEADRLLEMGFKEEVDEIIRQCSVSRQTMLFSATMTDEV 533
>gi|440633412|gb|ELR03331.1| hypothetical protein GMDG_06078 [Geomyces destructans 20631-21]
Length = 634
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 141/254 (55%), Gaps = 24/254 (9%)
Query: 373 EPI-LSQKRFDECG----ISPLTIKALTA-AGYIQMTRVQEATLSACLEGK-DAVVKAKT 425
EP+ L RF + G + P+ ++ +T + M VQ ATL L+ + D + +AKT
Sbjct: 80 EPVPLDTPRFADLGKENLLDPILLQTITEDLKFDHMMPVQAATLHDLLQKRTDVLAQAKT 139
Query: 426 GTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485
GTGK+IAFLLPAI+ +L I +L++ PTRELA QIA EA ALL+
Sbjct: 140 GTGKTIAFLLPAIQTMLNKGRQQGG-----ISLLVISPTRELAMQIAKEASALLQRLPQF 194
Query: 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545
V +GGT +++++ C IL+ATPGRL DH+ N+ + L LVLDEAD
Sbjct: 195 KVQFAIGGTNKDREEKQILGK-CDILIATPGRLYDHLSNQR-IRDSFRNLDTLVLDEADR 252
Query: 546 LLDLGFRKDVENIVDCLP----RRRQSLLFSATMP------KELVLKREHTYIDTVGLGS 595
LLD+GF +++I+ CLP +RQ +LFSAT+ LVL E+ + T+ G
Sbjct: 253 LLDMGFMNALKDIIKCLPDKEMSQRQGMLFSATIAPHVQKFAHLVLNNEYKFTSTIPKGE 312
Query: 596 VETPVKVSKYNIYV 609
V T +V + + V
Sbjct: 313 VNTHERVPQLLVTV 326
>gi|62857681|ref|NP_001016776.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
tropicalis]
gi|89270404|emb|CAJ82546.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
tropicalis]
Length = 640
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T++A+T G+ MT +Q + LEG+D + A+TG+GK++AFL+PAIE V K
Sbjct: 158 TLRAVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAIELVYK------ 211
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 212 LKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGL-IMGGSNRSAEAQKL-ANG 269
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +L++GF ++++ I++ LP+RRQ
Sbjct: 270 VNIVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQ 327
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 328 TMLFSATQTRKVEDLARISLKKEPLYV 354
>gi|444311371|ref|ZP_21146981.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
gi|443485287|gb|ELT48079.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
Length = 484
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP + A+ AAGY T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FAELGLSPKVLAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ E A + + V L+GG F +
Sbjct: 64 LEKGRARARMP-----RTLILEPTRELAAQVE-ENFAKYGINQRLNVALLIGGVSFDDQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRLLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 174 LIPFTRQTLFFSATMPPEI 192
>gi|416993086|ref|ZP_11938873.1| DEAD/DEAH box helicase domain-containing protein, partial
[Burkholderia sp. TJI49]
gi|325518442|gb|EGC98145.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
TJI49]
Length = 328
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 38 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 97
Query: 441 VLKATSSSTT------------------QLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
+ + Q V +L+L PTRELA Q+ A K+
Sbjct: 98 FAQLQKAQAQQPRAPREPNQGDRRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 157
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 158 KRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 213
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF +D+E IV+ P RQ++LFSAT+
Sbjct: 214 ADRMLDMGFIEDIETIVEATPESRQTMLFSATL 246
>gi|332252169|ref|XP_003275228.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Nomascus leucogenys]
Length = 671
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 191 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 244
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 245 LRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 302
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 303 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 360
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 361 TMLFSATQTRKVEDLARISLKKEPLYV 387
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 13/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E + P I+A+T G+ + T +Q ++ L+GKD + +A+TGTGK+ AF +P I
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K I LI+ PTRELA Q+A E I L G+ L + GG
Sbjct: 64 ISKNDEK--------IRALIMAPTRELAIQVAEE-IEKLSRFKGLRTLPIYGGQDIVRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P QI++ TPGRLLDHI K+ ++L + +VLDEAD +LD+GF +D+++I+
Sbjct: 115 RALKKKP-QIIIGTPGRLLDHINRKT---IKLEDVNTVVLDEADEMLDMGFMEDIQSILK 170
Query: 561 CLPRRRQSLLFSATMP 576
+P RQ++LFSATMP
Sbjct: 171 QVPDERQTMLFSATMP 186
>gi|290996680|ref|XP_002680910.1| dead box helicase protein [Naegleria gruberi]
gi|284094532|gb|EFC48166.1| dead box helicase protein [Naegleria gruberi]
Length = 657
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 15/214 (7%)
Query: 368 EKREEEPILSQKRFDEC-GISPLTIKALTAA-GYIQMTRVQEATLSACL----EGKDAVV 421
E E + S+ +F+E GI P +K+L G+ MT +Q T+ L +GKD +
Sbjct: 48 EDAEGNAVASKMKFEEVEGIHPQLLKSLKKEFGFEYMTAIQHLTIPNALGEKGKGKDIIA 107
Query: 422 KAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKN 481
+A TG GK++AFL+P++ +++ + V IY+++L PTRELA QI A LLK
Sbjct: 108 QAATGQGKTLAFLVPSLSCMMENEKN-----VHGIYIMVLAPTRELALQIQTVADKLLK- 161
Query: 482 HDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLD 541
H ++GG + V+Q +L ++L+A+PG+ LDHI+ +S + LK +LD
Sbjct: 162 HTNYKAACVIGGNKVSVEQAQLADPTVRVLIASPGKCLDHIQRES---LDCTHLKFFILD 218
Query: 542 EADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
EAD LLD GF + ++ IV LP++RQ+ LFSATM
Sbjct: 219 EADRLLDSGFEETLKKIVMQLPKQRQTYLFSATM 252
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ PL ++++ GY T +Q + +EG+D + A+TGTGK+ AF LP +
Sbjct: 19 FADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + P+ LIL PTRELA Q+ E++ + + GG +
Sbjct: 79 LMPLANASASPARHPVRALILTPTRELADQV-YESVKRYSKQTPLRSAVVFGGVDIGPQK 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L C++LVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D+E I+
Sbjct: 138 EALRRG-CEVLVATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLERIIR 193
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ LLFSAT E+
Sbjct: 194 LLPTQRQGLLFSATFSNEI 212
>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
gi|158432206|gb|EDP10495.1| DEAD/DEAH box helicase [Eubacterium dolichum DSM 3991]
Length = 572
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 123/202 (60%), Gaps = 14/202 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E IS ++A++ GY Q T +Q + +EGKD + ++ TGTGK+ AF +PAIE
Sbjct: 4 FNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPAIEM 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V + LI+CPTREL +Q+A E K +G+ ++ + GG + Q
Sbjct: 64 VQPQDKYANA--------LIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIE-RQ 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L C I+V TPGR++DH+ + +++L ++M++LDEAD +L++GF++D+E I+
Sbjct: 115 IQLLKRGCGIVVGTPGRIMDHLRRR---TLKLSDIRMVILDEADEMLNMGFKEDIEEILS 171
Query: 561 CLPRRR--QSLLFSATMPKELV 580
+P R Q++LFSAT P E++
Sbjct: 172 LMPSERSYQTILFSATWPSEIM 193
>gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226175|ref|YP_005617338.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384227233|ref|YP_005618983.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|414562732|ref|YP_005617923.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|11386733|sp|P57453.1|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp. (strain
APS)
gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 601
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G++P I++L GY++ + +Q + + LEG+D + A+TG+GK+ AF LP +
Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ L P +L+L PTRELA Q+A K GI VL L GG R+++
Sbjct: 68 L-------NINLKAP-QILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQL 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L P QI+V TPGRLLDH+ K G ++ L L LVLDEAD +L +GF +DVE I+
Sbjct: 120 RALRQGP-QIVVGTPGRLLDHL--KRG-TLNLSNLHGLVLDEADEMLRMGFIEDVETIMA 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P+ Q+ LFSATMP+ +
Sbjct: 176 QIPKEHQTALFSATMPEAI 194
>gi|355752613|gb|EHH56733.1| hypothetical protein EGM_06198 [Macaca fascicularis]
Length = 872
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTTGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVRTPGRLLQHMDE--TVSFHATDLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|384226687|ref|YP_005618438.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 601
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G++P I++L GY++ + +Q + + LEG+D + A+TG+GK+ AF LP +
Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ L P +L+L PTRELA Q+A K GI VL L GG R+++
Sbjct: 68 L-------NINLKAP-QILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQL 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L P QI+V TPGRLLDH+ K G ++ L L LVLDEAD +L +GF +DVE I+
Sbjct: 120 RALRQGP-QIVVGTPGRLLDHL--KRG-TLNLSNLHGLVLDEADEMLRMGFIEDVETIMA 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P+ Q+ LFSATMP+ +
Sbjct: 176 QIPKEHQTALFSATMPEAI 194
>gi|440634484|gb|ELR04403.1| hypothetical protein GMDG_01479 [Geomyces destructans 20631-21]
Length = 692
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 139/252 (55%), Gaps = 24/252 (9%)
Query: 378 QKRFDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
Q+ D + P IK +T G+ MT VQ+ T++ L+G D + +A+TGTGK++ FL+P
Sbjct: 87 QELADRGHVHPAIIKEITDTMGHDTMTDVQQLTIAETLKGTDVIAQARTGTGKTLGFLIP 146
Query: 437 AIEAVLKATSSSTTQ-----------LVPPIYVLILCPTRELASQIAAEAIALLKNHDGI 485
++ +LK + Q I +++ PTRELA Q+A EA L + + I
Sbjct: 147 VLQNILKTSPELADQGQDQSMRGSRSTASDIRAIVMSPTRELAEQLAVEAQKLCRGTN-I 205
Query: 486 GVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADH 545
V VGG+ K +++ C +LVATPGRL D + + V LK +VLDEAD
Sbjct: 206 KVQVAVGGSNKKAMLNQMQRQGCHLLVATPGRLHDLLTDPYS-RVSAPNLKAVVLDEADR 264
Query: 546 LLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKELV------LKREHTYIDTVGLGS 595
LLD GF KD+E I++ LP R RQ+LLFSAT+P+E++ LK ++ TV
Sbjct: 265 LLDQGFSKDIEAIINLLPNRNITDRQTLLFSATVPREVMSLVRSTLKPGFQFVQTVKSDE 324
Query: 596 VETPVKVSKYNI 607
V T ++ ++ +
Sbjct: 325 VPTHERIPQHVV 336
>gi|397496717|ref|XP_003819175.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Pan paniscus]
Length = 670
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|395786167|ref|ZP_10465894.1| hypothetical protein ME5_01212 [Bartonella tamiae Th239]
gi|395422465|gb|EJF88661.1| hypothetical protein ME5_01212 [Bartonella tamiae Th239]
Length = 472
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S + A+ +AGY + T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 4 FDDLGLSEKVVNAVKSAGYEEPTPIQAGAIPHVLERKDVLGIAQTGTGKTASFVLPMLTL 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + +P LIL PTRELA+Q+ KNH I V L+GG F+ +
Sbjct: 64 LEKGRARAR---MP--RTLILEPTRELAAQVEENFDKYGKNHR-INVALLIGGVSFEEQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 RKLERG-ADVLIATPGRLLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIEKICK 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ+L FSATM E+
Sbjct: 174 LIPFTRQTLFFSATMAPEIT 193
>gi|387889288|ref|YP_006319586.1| ATP-independent RNA helicase DbpA [Escherichia blattae DSM 4481]
gi|414593507|ref|ZP_11443151.1| ATP-independent RNA helicase DbpA [Escherichia blattae NBRC 105725]
gi|386924121|gb|AFJ47075.1| ATP-independent RNA helicase DbpA [Escherichia blattae DSM 4481]
gi|403195553|dbj|GAB80803.1| ATP-independent RNA helicase DbpA [Escherichia blattae NBRC 105725]
Length = 456
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 115/187 (61%), Gaps = 18/187 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTT 450
L + GY MT VQ A L L GKD V+A+TG+GK+ AF LLP I+A AT +
Sbjct: 18 LESLGYSAMTPVQAAALPVVLAGKDVRVQAQTGSGKTAAFGVGLLPKIDAGQFATQA--- 74
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
L+LCPTRELA Q+A E L + I +LTL GG F + L+ P I
Sbjct: 75 --------LVLCPTRELADQVAGELRRLARFLPNIKILTLCGGQPFGPQRDSLQHAP-HI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRL+DH++ + V+L L+ LVLDEAD +LD+GF + + ++D +P RRQ+LL
Sbjct: 126 IVATPGRLVDHLQKGT---VKLDALQTLVLDEADRMLDMGFSEAINQVLDSVPPRRQTLL 182
Query: 571 FSATMPK 577
FSAT P+
Sbjct: 183 FSATWPE 189
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ PL ++++ GY T +Q + +EG+D + A+TGTGK+ AF +P +
Sbjct: 19 FADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHR 78
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + P+ LIL PTRELA Q+ E++ + + GG +
Sbjct: 79 LMPLANASASPARHPVRALILTPTRELADQV-FESVKRYSKQTPLRSAVVFGGVDIGPQK 137
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L C+ILVATPGRLLDH+E K +V L + +LVLDEAD +LD+GF D+E I+
Sbjct: 138 EALRRG-CEILVATPGRLLDHVEQK---NVNLSQVGILVLDEADRMLDMGFLPDLERIIR 193
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ LLFSAT E+
Sbjct: 194 LLPAQRQGLLFSATFSNEI 212
>gi|7022744|dbj|BAA91709.1| unnamed protein product [Homo sapiens]
Length = 670
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 127/208 (61%), Gaps = 20/208 (9%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK---ATS 446
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K T
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMTR 249
Query: 447 SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESD 506
+ T VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 250 NGTG-------VLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GN 300
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RR
Sbjct: 301 GINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRR 358
Query: 567 QSLLFSATMPKE------LVLKREHTYI 588
Q++LFSAT ++ + LK+E Y+
Sbjct: 359 QTMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|395792193|ref|ZP_10471631.1| hypothetical protein MEI_00252 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714198|ref|ZP_17688457.1| hypothetical protein ME1_01203 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421345|gb|EJF87601.1| hypothetical protein ME1_01203 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432707|gb|EJF98682.1| hypothetical protein MEI_00252 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 467
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 122/205 (59%), Gaps = 10/205 (4%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I S K FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+
Sbjct: 2 IPSLKSFDDLGLSTKVIKAVKSAGYTVPTPIQSGTIPHVLQRKDVLGIAQTGTGKTASFV 61
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP + + K + + +P LIL PTRELA+Q+ NH + V L+GG
Sbjct: 62 LPMLTLLEKGRARAR---MP--RTLILEPTRELAAQVEENFDKYGINHR-LNVALLIGGV 115
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F+ R+LE +L+ATPGRLLDH E L +MG+++LV+DEAD +LD+GF D
Sbjct: 116 SFEQQDRKLERG-ADVLIATPGRLLDHFERGKLL---MMGVEILVIDEADRMLDMGFIPD 171
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E I P RQ+L FSATM E+
Sbjct: 172 IERICKLTPFTRQTLFFSATMAPEI 196
>gi|165934071|gb|ABY74563.1| DEAD box polypeptide 18 (predicted) [Callithrix jacchus]
Length = 623
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 143 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 196
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 197 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 254
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 255 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 312
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 313 TMLFSATQTRKVEDLARISLKKEPLYV 339
>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 502
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 126/204 (61%), Gaps = 10/204 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ +K++TAAGY T VQ T+ L+G D V + TG+GK+ AF+LPA++
Sbjct: 3 FDTLGLHEAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPALQR 62
Query: 441 VLKA-----TSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
VL A + + Q+ P VL+L PTRELA Q++ A ++ G+ V T+VGG
Sbjct: 63 VLAARNDPSKARAKGQVCGP-RVLVLAPTRELAMQVSKAASTYGQHVAGLRVATIVGGVP 121
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ L P IL+ATPGRL+DH+ SG +V L ++ML+LDEAD +LD+GF +D+
Sbjct: 122 YPAQLAALRK-PLDILIATPGRLIDHL--NSGKAV-LGDVEMLILDEADRMLDMGFIEDI 177
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E I + LP+ RQ+++ SAT ++
Sbjct: 178 ERIAESLPQERQTVMVSATFAGQV 201
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 116/195 (59%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++A+T GY T +Q + ++G+D + A+TGTGK+ F LP I+
Sbjct: 11 FDSFGLHADILRAITEQGYRVATPIQAQAIPVVMQGRDVMGAAQTGTGKTAGFSLPIIQR 70
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S+ST+ P+ L+L PTRELA Q+ + +A H + + GG
Sbjct: 71 LLPFASTSTSPARHPVRALMLTPTRELADQV-YDNVAKYAKHTALRSTVVFGGVDMNPQT 129
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +ILVATPGRLLDH++ K +V L ++MLVLDEAD +LD+GF D++ I++
Sbjct: 130 AELRRG-VEILVATPGRLLDHVQQK---TVNLSQVQMLVLDEADRMLDMGFLPDLQRILN 185
Query: 561 CLPRRRQSLLFSATM 575
LP +RQ+LLFSAT
Sbjct: 186 LLPAQRQTLLFSATF 200
>gi|402814785|ref|ZP_10864378.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
gi|402507156|gb|EJW17678.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus alvei DSM
29]
Length = 526
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 118/201 (58%), Gaps = 13/201 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +QE + + G+D + +A+TGTGK+ AF +P I
Sbjct: 2 KTFAEFGLEPKVLQAITELGFEESTPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ + LI+ PTRELA Q+A E I L G+ L + GG
Sbjct: 62 SKIDPTEER--------VKALIMTPTRELAIQVADE-IGKLTRFKGVRSLPIYGGQDIGR 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ +RL + +VLDEAD +LD+GF +D+ +I
Sbjct: 113 QIRALKKHP-QIIIGTPGRLLDHINRKT---IRLDDVATVVLDEADEMLDMGFMEDITSI 168
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ +P +RQ++LFSATMP +
Sbjct: 169 LSLVPEQRQTMLFSATMPPNI 189
>gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
[Cytophaga hutchinsonii ATCC 33406]
Length = 580
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 125/204 (61%), Gaps = 13/204 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP ++A+ + GY + T +QE T+ + GKD +A+TGTGK+ AF +PAIE
Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V S + TQ LILCPTRELA Q+ E L K G+ VL + GG +
Sbjct: 63 V--DISINQTQ------SLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L++ I+V TPGR++DH++ + ++ L ++LDEAD +L++GFR+D+E I+
Sbjct: 115 RDLKAG-AHIVVGTPGRIIDHLDRR---TLNASHLSQIILDEADEMLNMGFREDIELILT 170
Query: 561 CLPRRRQSLLFSATM-PKELVLKR 583
LP RQ++LFSAT+ P L L +
Sbjct: 171 RLPEERQTVLFSATLAPPILALAK 194
>gi|387273435|gb|AFJ70212.1| ATP-dependent RNA helicase DDX18 [Macaca mulatta]
Length = 670
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|29351661|gb|AAH49217.1| DDX10 protein, partial [Homo sapiens]
Length = 745
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETVSFHATDLQMLVLDEADRILDMGFADTMNAVI 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 455
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 10/200 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E ++P +KA+ AGY T +QE + A LEG+D + A+TGTGK+ +F LP I
Sbjct: 8 KFNELNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPMIT 67
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + + L+LCPTRELA+Q+ AE H + L+GG FK +
Sbjct: 68 LLARGRARARMP-----RSLVLCPTRELAAQV-AENFDTYAKHLKLTKALLIGGVSFK-E 120
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q L +L+ATPGRLLDH E L L G++++V+DEAD +LD+GF D+E I
Sbjct: 121 QDALIDRGVDVLIATPGRLLDHFERGKLL---LTGVQIMVVDEADRMLDMGFIPDIERIF 177
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 178 SLTPFTRQTLFFSATMAPEI 197
>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 543
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 120/199 (60%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GIS I L A G + T VQE + LEG+D + +A+TGTGK++AF+LP +E
Sbjct: 24 FKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILEK 83
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S+ +TQ LI+ PTRELA QI +E L+++ + VL + GG +
Sbjct: 84 I--DPSNGSTQ------ALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQL 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L+ QI+VATPGRLLDH+ +V+L + LVLDEAD +L +GF ++E I+
Sbjct: 136 HKLQRQ-TQIVVATPGRLLDHLRRG---TVQLDEVSFLVLDEADQMLHIGFLNEMELIIS 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ++LFSATMP ++
Sbjct: 192 QTPASRQTMLFSATMPDDI 210
>gi|451941693|ref|YP_007462330.1| ATP-dependent RNA helicase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901080|gb|AGF75542.1| ATP-dependent RNA helicase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 467
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 122/205 (59%), Gaps = 10/205 (4%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I S K FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+
Sbjct: 2 IPSLKSFDDLGLSTKVIKAVKSAGYTVPTPIQSGTIPHVLKRKDVLGIAQTGTGKTASFV 61
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP + + K + + +P LIL PTRELA+Q+ NH + V L+GG
Sbjct: 62 LPMLTLLEKGRARAR---MP--RTLILEPTRELAAQVEENFDKYGINHR-LNVALLIGGV 115
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F+ R+LE +L+ATPGRLLDH E L +MG+++LV+DEAD +LD+GF D
Sbjct: 116 SFEQQDRKLERG-ADVLIATPGRLLDHFERGKLL---MMGVEILVIDEADRMLDMGFIPD 171
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E I P RQ+L FSATM E+
Sbjct: 172 IERICKLTPFTRQTLFFSATMAPEI 196
>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 546
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 13/201 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +Q ++ L G D + +A+TGTGK+ AF +P I
Sbjct: 2 KTFAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ I LI+ PTRELA Q+A E I L + G+ L + GG
Sbjct: 62 NKIPVTEDR--------IVALIMTPTRELAIQVAEE-IGKLTRYKGLRSLPIYGGQEIGR 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ ++L ++ ++LDEAD +LD+GF +D+ +I
Sbjct: 113 QIRALKKHP-QIIIGTPGRLLDHINRKT---IKLADVQTVILDEADEMLDMGFMEDITSI 168
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ +P RQ++LFSATMP +
Sbjct: 169 LSMVPAERQTMLFSATMPPNI 189
>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 467
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 119/207 (57%), Gaps = 12/207 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P + F + + T+ LT GY++MT +Q A+L L G D + +AKTG+GK+ AF
Sbjct: 4 PTTAGAPFSQLPLPAATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAF 63
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
L A+ A L + + + ++LCPTRELA Q+ E L + + I VLTL GG
Sbjct: 64 SL-ALLARLDTRNFA-------VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGG 115
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + LE I+V TPGR++DH+E S + L L LVLDEAD +LD+GF
Sbjct: 116 TPMRPQTASLEHG-AHIVVGTPGRIMDHLERGS---LPLQSLNTLVLDEADRMLDMGFFD 171
Query: 554 DVENIVDCLPRRRQSLLFSATMPKELV 580
D+ +V P+ RQ+LLFSAT P+ +V
Sbjct: 172 DIATVVRQCPKERQTLLFSATYPEGIV 198
>gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 578
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 115/199 (57%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GI P L + G T VQ+ + L G+D + +A+TGTGK+IAF LP
Sbjct: 5 FISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLP---- 60
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ Q + LIL PTRELA QI +E + L G VL GG
Sbjct: 61 ILQRIDIDKEQ----VQALILTPTRELAIQITSE-LKKLAAAVGAKVLAAYGGQDVDAQI 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L + P I+VATPGRL+DH+ ++ + L LKMLVLDEAD +L +GF +V+NIVD
Sbjct: 116 RKLNNSP-HIVVATPGRLIDHMRRET---INLGKLKMLVLDEADQMLHMGFLPEVQNIVD 171
Query: 561 CLPRRRQSLLFSATMPKEL 579
PR RQ++LFSATMP ++
Sbjct: 172 QTPRARQTMLFSATMPDQI 190
>gi|171847235|gb|AAI61473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
tropicalis]
Length = 640
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T++A+T G+ MT +Q + LEG+D + A+TG+GK++AFL+PAIE V K
Sbjct: 158 TLRAVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAIELVYK------ 211
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 212 LKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGL-IMGGSNRSAEAQKL-ANG 269
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +L++GF ++++ I++ LP+RRQ
Sbjct: 270 VNIVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQ 327
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 328 TMLFSATQTRKVEDLARISLKKEPLYV 354
>gi|346319028|gb|EGX88630.1| ATP-dependent RNA helicase MSS116 [Cordyceps militaris CM01]
Length = 585
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 144/260 (55%), Gaps = 29/260 (11%)
Query: 371 EEEPILSQKRFDECG---ISPLTIKALTA-AGYIQMTRVQEATLSACLEG--KDAVVKAK 424
E P+ + + D G + PL I+ +T + M VQ ATL L D +V+AK
Sbjct: 83 EAVPLDTPRFADLAGQNLVHPLLIQTITDDLKFNHMMPVQAATLWELLPPNRSDCLVQAK 142
Query: 425 TGTGKSIAFLLPAIEAVLKAT-----SSSTTQLVPPIYVLILCPTRELASQIAAEAIALL 479
TGTGK++AFLLPA++ +L + + ST I +L++ PTRELA QIAAEA +LL
Sbjct: 143 TGTGKTVAFLLPALQTMLSKSRGGNGAEST------ISLLVISPTRELAMQIAAEASSLL 196
Query: 480 KNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLV 539
+ V +GGT ++R L C +L+ATPGRLLDH+ N+ L L L LV
Sbjct: 197 QRMPRYKVRIAIGGTNKDREERMLHEG-CDVLIATPGRLLDHMANEDVLYA-LRALDTLV 254
Query: 540 LDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKE------LVLKREHTYID 589
LDEAD LLD+GF + +IV LP R RQ +LFSAT+ LVL+ + +I
Sbjct: 255 LDEADRLLDMGFMPALRDIVGKLPNRAQVPRQGMLFSATIAPHVKQVAGLVLQTGYKFIS 314
Query: 590 TVGLGSVETPVKVSKYNIYV 609
T+ G T +V ++ I V
Sbjct: 315 TIAEGEAGTHERVPQHLIKV 334
>gi|345021499|ref|ZP_08785112.1| DEAD/DEAH box helicase domain-containing protein [Ornithinibacillus
scapharcae TW25]
Length = 433
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI L + G I T +QE T+ + LEGKD + KA+TGTGK++AF+LP +E
Sbjct: 4 FLQLGIRKEINHTLRSLGIITPTSIQERTIPSVLEGKDVIAKAQTGTGKTLAFVLPILEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S + LIL PTRELA QI+ E +++N +GI L + GG
Sbjct: 64 IDVQKSD--------VQALILTPTRELALQISKEIKRMVENVEGIHTLAVYGGQDVAHQL 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ I+VATPGRLLDHI ++ L ++MLV+DEAD +L +GF +V++I+
Sbjct: 116 KKLKGS-THIVVATPGRLLDHIRRG---TIELSTVQMLVIDEADQMLLMGFLPEVDDIIH 171
Query: 561 CLPRRRQSLLFSATMPKEL 579
RQ++LFSATMP E+
Sbjct: 172 ETLSSRQTMLFSATMPNEI 190
>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
antri DSM 16041]
gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
antri DSM 16041]
Length = 512
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 117/199 (58%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S +KA+ +GY + T +QE T+ L+G+D + +A+TGTGK+ AF LP IE
Sbjct: 17 FSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEH 76
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V P I LI+ PTREL Q E L K+ + V + GG +
Sbjct: 77 VDTDN--------PNIQALIISPTRELVIQTQEELYRLGKD-KHVRVQVVYGGADIRRQI 127
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L+ P QILV TPGRL DHI +V+L ++ LVLDEAD +L++GF +D+E I+
Sbjct: 128 KSLKHHP-QILVGTPGRLRDHINRH---TVKLGHIQTLVLDEADEMLNMGFLEDIEAIIK 183
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP E+
Sbjct: 184 ETPAERQTLLFSATMPPEI 202
>gi|356563121|ref|XP_003549814.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine
max]
Length = 575
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 18/227 (7%)
Query: 360 LNGNGEKKEKREE----EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE 415
+ G E KEK+ + I+S + F+ G+S T KA+ G+ MT++Q + L
Sbjct: 67 VEGESEVKEKKVKNNGGSGIMSTESFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLLI 126
Query: 416 GKDAVVKAKTGTGKSIAFLLPAIEAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAA 473
GKD + A+TG+GK++AFL+PA+E + +K T + V+++CPTRELA Q A
Sbjct: 127 GKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAG------VIVICPTRELAIQTHA 180
Query: 474 EAIALLKNH-DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRL 532
A LLK H +G+ ++GG+ K++ R+ + +LV TPGRLLDH++N G +
Sbjct: 181 VAKELLKYHSQTLGL--VIGGSARKIEAERI-AKGINLLVGTPGRLLDHLQNTKGFIYK- 236
Query: 533 MGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
LK L++DEAD +L+ F ++++ I+ LP+ RQ+ LFSAT K++
Sbjct: 237 -NLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKV 282
>gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 433
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+ SP ++A++ GY QMT +Q+ + A G+D + A+TGTGK+ AF LP ++
Sbjct: 2 RFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+++ S + L VLIL PTRELA+Q+A A K + VLT+ GG + +
Sbjct: 62 KMVEKPSET---LKSNTRVLILTPTRELAAQVADNVTAYCK-YLNFSVLTIYGGVKIETQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L+ ++VATPGRLL+H+ + +V L + LVLDEAD +LD+GF D++ I+
Sbjct: 118 AQKLKRG-ADVIVATPGRLLEHL---TACNVSLSNVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 560 DCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ ++RQ+LLFSAT P+ + + +++T DTV
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTV 219
>gi|384227801|ref|YP_005619546.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538741|gb|AEO08718.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 600
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G++P I++L GY++ + +Q + + LEG+D + A+TG+GK+ AF LP +
Sbjct: 8 FSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHN 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ L P +L+L PTRELA Q+A K GI VL L GG R+++
Sbjct: 68 L-------NINLKAP-QILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQL 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L P QI+V TPGRLLDH+ K G ++ L L LVLDEAD +L +GF +DVE I+
Sbjct: 120 RALRQGP-QIVVGTPGRLLDHL--KRG-TLNLSNLHGLVLDEADEMLRMGFIEDVETIMA 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P+ Q+ LFSATMP+ +
Sbjct: 176 QIPKEHQTALFSATMPEAI 194
>gi|150863803|ref|XP_001382401.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
gi|158514819|sp|A3LNR6.2|HAS1_PICST RecName: Full=ATP-dependent RNA helicase HAS1
gi|149385059|gb|ABN64372.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
Length = 567
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 148/256 (57%), Gaps = 31/256 (12%)
Query: 339 EDEHDFEEQVELIRKEIS--KNKLNGNGEKKEKREEEPIL--------------SQKRFD 382
E + DF+E ++ +++ + K E+K KR+EE +F+
Sbjct: 47 ELDEDFDEVANMLGADVTDPEEKKQSKLERKRKRDEEATAEYTKPEVVDNEDDAQNDKFE 106
Query: 383 ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV- 441
+ G+S T++A++ G+ MT+VQ T+ L GKD + AKTG+GK++AFL+PAIE +
Sbjct: 107 DAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLY 166
Query: 442 -LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVD 499
LK + T V+++ PTRELA QI A L+ +H G+ ++GG + +
Sbjct: 167 SLKFKPRNGTG------VIVVSPTRELALQIFGVARELMAHHTQTFGI--VIGGANRRQE 218
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+L + +L+ATPGRLLDH++N G + LK LV+DEAD +L++GF ++++ I+
Sbjct: 219 AEKL-AKGVNLLIATPGRLLDHLQNTQGFVFK--NLKALVIDEADRILEIGFEEEMKQII 275
Query: 560 DCLPR-RRQSLLFSAT 574
LP+ RQS+LFSAT
Sbjct: 276 KILPKEERQSMLFSAT 291
>gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
Length = 642
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 123/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE + A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
A+ + + + +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 NALTGQETFVPFKERMKAITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L ++ L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVIVATPGRLLDLVNRR---QLKLDKVESLIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I + R Q+L+FSAT ++
Sbjct: 178 LEAIGELAANRNQTLMFSATFADRII 203
>gi|38327634|ref|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens]
gi|20532388|sp|Q9NVP1.2|DDX18_HUMAN RecName: Full=ATP-dependent RNA helicase DDX18; AltName: Full=DEAD
box protein 18; AltName: Full=Myc-regulated DEAD box
protein; Short=MrDb
gi|119615599|gb|EAW95193.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
sapiens]
gi|119615600|gb|EAW95194.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
sapiens]
Length = 670
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 244
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 245 -RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|355566036|gb|EHH22465.1| hypothetical protein EGK_05736 [Macaca mulatta]
Length = 661
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 227 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 280
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 281 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 338
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 339 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 396
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 397 TMLFSATQTRKVEDLARISLKKEPLYV 423
>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase [Chelativorans sp. BNC1]
gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
Length = 477
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+SP + A+ AGY T +Q + L+GKD + A+TGTGK+ +F+LP +
Sbjct: 3 FSDLGLSPKVLAAVGDAGYTVPTPIQAGAIPHALQGKDVLGIAQTGTGKTASFVLPMLTR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + + LIL PTRELA+Q+ + KNH + + L+GG F +
Sbjct: 63 LERGRARARMP-----RTLILEPTRELAAQVEENFVKYGKNHR-LNIALLIGGVSFDEQE 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 117 KKLERG-ADVLIATPGRLLDHHERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATMP E+
Sbjct: 173 LIPFTRQTLFFSATMPPEI 191
>gi|301764042|ref|XP_002917443.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like
[Ailuropoda melanoleuca]
Length = 926
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 126 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 185
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 186 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 240
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 241 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 296
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 297 ENLPKKRQTLLFSATQTKSV 316
>gi|380817640|gb|AFE80694.1| ATP-dependent RNA helicase DDX18 [Macaca mulatta]
gi|383422527|gb|AFH34477.1| ATP-dependent RNA helicase DDX18 [Macaca mulatta]
Length = 670
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|374604838|ref|ZP_09677788.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
gi|374389546|gb|EHQ60918.1| DEAD/DEAH box helicase [Paenibacillus dendritiformis C454]
Length = 517
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 119/201 (59%), Gaps = 13/201 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +QE + + G+D + +A+TGTGK+ AF +P I
Sbjct: 2 KTFVEFGLEPKLLQAITELGFEEATPIQEKAIPVAMTGRDLIGQAQTGTGKTAAFGIPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ + + L++ PTRELA Q+A E I L G+ L + GG
Sbjct: 62 SKIDPSEER--------VVALVMTPTRELAIQVAEE-IGKLTRFKGVRSLPIYGGQDIGR 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ +RL ++ +VLDEAD +LD+GF +D+ +I
Sbjct: 113 QIRALKKHP-QIIIGTPGRLLDHINRKT---IRLDHVQTVVLDEADEMLDMGFMEDITSI 168
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ +P RQ++LFSATMP +
Sbjct: 169 LSLVPEERQTMLFSATMPPNI 189
>gi|189234356|ref|XP_973872.2| PREDICTED: similar to pitchoune CG6375-PB [Tribolium castaneum]
Length = 695
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 20/224 (8%)
Query: 375 ILSQKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
ILS FD + T+KA+ G+ +T +Q ++ LEG+D V AKTG+GK++A
Sbjct: 124 ILSNCTFDSLKNKVCENTLKAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLA 183
Query: 433 FLLPAIEAVLKATSSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
FL+PA+E + K + +P V+I+ PTREL+ Q L+K H L +
Sbjct: 184 FLIPAVELIYK------LKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVM 237
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
GGT + + ++L S ILVATPGRLLDH++N + L+ LV+DEAD +LD+G
Sbjct: 238 -GGTSRQTEAQKL-SKGINILVATPGRLLDHMQNTPDFLFK--NLQCLVIDEADRILDIG 293
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYI 588
F ++++ I++ LP+RRQ++LFSAT K+ L LK+E Y+
Sbjct: 294 FEEEMKQIINLLPKRRQTMLFSATQTKKTEALTSLALKKEPIYV 337
>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
Length = 528
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 122/205 (59%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ + +F++ IS +A+ G+ + +QE + L GKD + +A+TGTGK+ AF +
Sbjct: 1 MEKIKFEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PA++ + S + +++LCPTRELA Q E L K GI VL + GG
Sbjct: 61 PALDTIDLDNKS--------LQIMVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ L+ QI++ TPGR++DHI K+ ++ +KM+VLDEAD +LD+GFR D+
Sbjct: 113 IDRQIKALKRG-VQIIIGTPGRVIDHIRRKT---LKTDNIKMIVLDEADEMLDMGFRDDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I+ +P+ RQ++LFSATM K ++
Sbjct: 169 ETIIQAIPQNRQTILFSATMAKAII 193
>gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
15053]
gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
15053]
Length = 526
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 123/201 (61%), Gaps = 12/201 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+E + P +KA+ G+ + + +Q + EG+D + +A+TGTGK+ AF +P +E
Sbjct: 5 RFEELELCPEIMKAVKKMGFEEASPIQAKAIPLVREGRDIIGQAQTGTGKTAAFGIPLLE 64
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + ++LCPTRELA Q+A E L + GI VL + GG
Sbjct: 65 KIDPKNKK--------LQAVVLCPTRELAIQVADEIRTLAEYMHGIKVLPIYGGQEIVKQ 116
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+S Q+++ TPGR++DH+ K+ V++ + +VLDEAD +L++GFR+D+E I+
Sbjct: 117 IRSLKSG-VQLMIGTPGRVMDHMRRKT---VKMEHVHTVVLDEADEMLNMGFREDIETIL 172
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P+ RQ++LFSATMPK ++
Sbjct: 173 EGVPQERQTVLFSATMPKPIL 193
>gi|421861510|ref|ZP_16293512.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410828936|dbj|GAC43949.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 517
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 119/201 (59%), Gaps = 13/201 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +QE + + G+D + +A+TGTGK+ AF +P I
Sbjct: 5 KTFVELGLEPKLLQAITELGFEEATPIQEIAIPVAMMGRDLIGQAQTGTGKTAAFGIPLI 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ + + L++ PTRELA Q+A E I L G+ L + GG
Sbjct: 65 SKIDPSEER--------VVALVMTPTRELAIQVAEE-IGKLTRFKGVRSLPIYGGQDIGR 115
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ +RL ++ +VLDEAD +LD+GF +D+ +I
Sbjct: 116 QIRALKKHP-QIIIGTPGRLLDHINRKT---IRLNDVQTVVLDEADEMLDMGFMEDITSI 171
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ +P RQ++LFSATMP +
Sbjct: 172 LSLVPEERQTMLFSATMPPNI 192
>gi|395781559|ref|ZP_10461977.1| hypothetical protein MCY_00374 [Bartonella rattimassiliensis 15908]
gi|395420992|gb|EJF87250.1| hypothetical protein MCY_00374 [Bartonella rattimassiliensis 15908]
Length = 467
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 120/205 (58%), Gaps = 10/205 (4%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I S K FD+ G+S I A+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+
Sbjct: 2 IPSLKNFDDLGLSEKVINAVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFV 61
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP + + K + + LIL PTRE+A+Q+ NH + V L+GG
Sbjct: 62 LPMLTLLEKGRARARMP-----RTLILEPTREIAAQVEENFDKYGINHR-LNVALLIGGV 115
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F++ R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF D
Sbjct: 116 SFELQDRKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGFIPD 171
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E I P RQ+L FSATM E+
Sbjct: 172 IEQICKLTPFTRQTLFFSATMAPEI 196
>gi|346992915|ref|ZP_08860987.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. TW15]
Length = 455
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 10/200 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E ++P +KA+ AGY T +QE + A LEG+D + A+TGTGK+ +F LP I
Sbjct: 8 KFNELNLNPKVLKAIEEAGYETPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPMIT 67
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + + L+LCPTRELA+Q+ AE H + L+GG FK +
Sbjct: 68 LLARGRARARMP-----RSLVLCPTRELAAQV-AENFDTYAKHLKLTKALLIGGVSFK-E 120
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q L +L+ATPGRLLDH E L L G++++V+DEAD +LD+GF D+E I
Sbjct: 121 QDALIDRGVDVLIATPGRLLDHFERGKLL---LTGVQIMVVDEADRMLDMGFIPDIERIF 177
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 178 SLTPFTRQTLFFSATMAPEI 197
>gi|12654791|gb|AAH01238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
gi|13097183|gb|AAH03360.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
gi|19353239|gb|AAH24739.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
Length = 670
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 244
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 245 -RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|338210794|ref|YP_004654843.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336304609|gb|AEI47711.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 570
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 126/200 (63%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+S +KA+T G+ + + +Q + + LEG+D + +A+TGTGK+ AF +PA+E
Sbjct: 5 FDSLGLSEEILKAVTEMGFTKPSPIQAEAIPSLLEGRDVLGQAQTGTGKTAAFGIPALEK 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V S TQ VL+LCPTRELA Q+ E + K G+ + T+ GG +
Sbjct: 65 V--DISDKRTQ------VLMLCPTRELAVQVTEELRRIAKYKKGLKLETVYGGDSIERQI 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ QI+V TPGR++D IE K +++L + +VLDEAD +LD+GFR+D++ I++
Sbjct: 117 RSLKIG-AQIVVGTPGRVMDLIERK---ALKLDFVNYVVLDEADEMLDMGFREDIDTILE 172
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ++LFSATM K ++
Sbjct: 173 SVPDERQTVLFSATMSKPIM 192
>gi|281182661|ref|NP_001162381.1| ATP-dependent RNA helicase DDX18 [Papio anubis]
gi|162415904|gb|ABX89268.1| DEAD box polypeptide 18 (predicted) [Papio anubis]
Length = 670
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|451936623|ref|YP_007460477.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777546|gb|AGF48521.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 447
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + L GYI+ T +QE+ + LEG D + A+TGTGK+ AF+LP I
Sbjct: 16 FSSFGLDDSILSVLNEIGYIKPTLIQESAIPNILEGFDFIGAAQTGTGKTAAFILPIINK 75
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + + LIL PTRELA Q+ E I L + + L L GG + Q
Sbjct: 76 LIPFANNSVSPARHLLRSLILVPTRELADQV-YECIKLYSKNTKLRSLVLFGGVDLE-QQ 133
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L C+ILVATPGRL+ HI K ++ L+ + LVLDEAD +LD+GF DV+ IV
Sbjct: 134 KDLLHKGCEILVATPGRLIAHINQK---NISLINVDTLVLDEADRMLDMGFIPDVDRIVG 190
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYI 588
LP+ RQSLLFSAT E + K TY+
Sbjct: 191 MLPKNRQSLLFSATF-SEGIRKLGLTYL 217
>gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
43768]
gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
43768]
Length = 457
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 118/195 (60%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSATM 575
LP++RQ+LLFSAT
Sbjct: 180 MLPKQRQTLLFSATF 194
>gi|397662367|ref|YP_006503067.1| ATP-dependent rna helicase [Taylorella equigenitalis ATCC 35865]
gi|394350546|gb|AFN36460.1| ATP-dependent rna helicase [Taylorella equigenitalis ATCC 35865]
Length = 581
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 23/224 (10%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ +F + GI +K+L + T VQ ++ L+GKD +V A+TG+GK+ AF+L
Sbjct: 1 MNDSKFADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFML 60
Query: 436 PAIEAVLK-----------ATSSST-----TQLVPPIY---VLILCPTRELASQIAAEAI 476
P+I+ +L A+ SS ++ PP Y +L+L PTRELA Q++
Sbjct: 61 PSIQQLLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATK 120
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
+ G+ + TLVGG + L S +I+VATPGRLLDHI K+G V L LK
Sbjct: 121 EFIYGFKGVHIATLVGGMAYGPQINSL-SREVEIVVATPGRLLDHI--KAG-RVNLRNLK 176
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580
+L+LDEAD +LD+GF D+ N+V P RQ+LLFSAT +V
Sbjct: 177 ILILDEADRMLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVV 220
>gi|381208749|ref|ZP_09915820.1| ATP-dependent RNA helicase [Lentibacillus sp. Grbi]
Length = 495
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E IS +KAL G+ + T +Q T+ +EG DA+ +A+TGTGK+ AF +P IE
Sbjct: 4 FKELNISQAIMKALQKMGFEEATPIQAETIPLAIEGYDAIGQAQTGTGKTAAFGIPMIEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ I L++ PTRELA Q+A E + L G+ +++ GG +
Sbjct: 64 IDPQQRK--------IQGLVVAPTRELAIQVAEE-LNRLGKIKGVRSMSVYGGQHMERQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+VATPGRLLDH+ K+ +R ++ VLDEAD +L++GF D+ +I+
Sbjct: 115 RALKDGP-HIVVATPGRLLDHMRRKT---IRTENIRTAVLDEADEMLNMGFIDDIRDILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMPKE+
Sbjct: 171 NIPEERQTLLFSATMPKEI 189
>gi|270001921|gb|EEZ98368.1| hypothetical protein TcasGA2_TC000825 [Tribolium castaneum]
Length = 629
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 20/224 (8%)
Query: 375 ILSQKRFDECG--ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
ILS FD + T+KA+ G+ +T +Q ++ LEG+D V AKTG+GK++A
Sbjct: 124 ILSNCTFDSLKNKVCENTLKAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLA 183
Query: 433 FLLPAIEAVLKATSSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
FL+PA+E + K + +P V+I+ PTREL+ Q L+K H L +
Sbjct: 184 FLIPAVELIYK------LKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVM 237
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
GGT + + ++L S ILVATPGRLLDH++N + L+ LV+DEAD +LD+G
Sbjct: 238 -GGTSRQTEAQKL-SKGINILVATPGRLLDHMQNTPDFLFK--NLQCLVIDEADRILDIG 293
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKREHTYI 588
F ++++ I++ LP+RRQ++LFSAT K+ L LK+E Y+
Sbjct: 294 FEEEMKQIINLLPKRRQTMLFSATQTKKTEALTSLALKKEPIYV 337
>gi|126643119|ref|YP_001086103.1| ATP-dependent RNA helicase [Acinetobacter baumannii ATCC 17978]
gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
gi|417546591|ref|ZP_12197677.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC032]
gi|417550372|ref|ZP_12201451.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-18]
gi|417553488|ref|ZP_12204557.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-81]
gi|417563156|ref|ZP_12214035.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC137]
gi|417563640|ref|ZP_12214514.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC143]
gi|417572732|ref|ZP_12223586.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC-5]
gi|421199750|ref|ZP_15656911.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC109]
gi|421455389|ref|ZP_15904733.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-123]
gi|421633323|ref|ZP_16073960.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-13]
gi|421665758|ref|ZP_16105864.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC087]
gi|421669129|ref|ZP_16109157.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC099]
gi|421788966|ref|ZP_16225234.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-82]
gi|421809430|ref|ZP_16245265.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC035]
gi|445398086|ref|ZP_21429457.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-57]
gi|445444213|ref|ZP_21442857.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-92]
gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
17978]
gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
gi|395525738|gb|EJG13827.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC137]
gi|395555396|gb|EJG21397.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC143]
gi|395564747|gb|EJG26398.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC109]
gi|400208300|gb|EJO39270.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC-5]
gi|400211627|gb|EJO42589.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-123]
gi|400384479|gb|EJP43157.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC032]
gi|400386197|gb|EJP49271.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-18]
gi|400389905|gb|EJP56952.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-81]
gi|408706783|gb|EKL52083.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-13]
gi|410389256|gb|EKP41671.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC099]
gi|410389492|gb|EKP41904.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC087]
gi|410399852|gb|EKP52033.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-82]
gi|410414327|gb|EKP66129.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC035]
gi|444761858|gb|ELW86235.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-92]
gi|444783845|gb|ELX07682.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-57]
gi|452946371|gb|EME51870.1| ATP-dependent RNA helicase [Acinetobacter baumannii MSP4-16]
Length = 615
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|386312973|ref|YP_006009138.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 433
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+ SP ++A++ GY QMT +Q+ + A G+D + A+TGTGK+ AF LP ++
Sbjct: 2 RFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+++ S + L VLIL PTRELA+Q+A A K + VLT+ GG + +
Sbjct: 62 KMVEKPSET---LKSNARVLILTPTRELAAQVADNVTAYCK-YLNFSVLTIYGGVKIETQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L+ ++VATPGRLL+H+ + +V L + LVLDEAD +LD+GF D++ I+
Sbjct: 118 AQKLKRG-ADVIVATPGRLLEHL---TACNVSLSNVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 560 DCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ ++RQ+LLFSAT P+ + + +++T DTV
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTV 219
>gi|59800607|ref|YP_207319.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|385335019|ref|YP_005888966.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
NCCP11945]
gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 457
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 5/195 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L +++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKAEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSATM 575
LPR+RQ+LLFSAT
Sbjct: 180 MLPRQRQTLLFSATF 194
>gi|399018220|ref|ZP_10720404.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398101856|gb|EJL92056.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 466
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 115/202 (56%), Gaps = 18/202 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + P + L GY +MT +Q +L LEG+D + +AKTG+GK+ AF + +
Sbjct: 10 FSSLALMPAMLANLDVLGYREMTAIQAESLPVALEGRDLIAQAKTGSGKTAAFGIAMLH- 68
Query: 441 VLKATSSSTTQLVPPIYV---LILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+L P + L++CPTRELA Q++ E L + D I +LTL GGT +
Sbjct: 69 ----------RLNPSYFAIQGLVICPTRELADQVSNELRRLARFTDNIKILTLCGGTAMR 118
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
LE C I+V TPGR+ DHI + + L ++ LVLDEAD ++D+GF +D+E
Sbjct: 119 PQIASLEHG-CHIVVGTPGRIRDHIGRDT---INLKAVQTLVLDEADRMVDMGFYEDIEG 174
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
IV P RRQ+LLFSAT P ++
Sbjct: 175 IVSACPARRQTLLFSATYPDDI 196
>gi|423716940|ref|ZP_17691130.1| hypothetical protein MEG_00670 [Bartonella tamiae Th307]
gi|395429014|gb|EJF95089.1| hypothetical protein MEG_00670 [Bartonella tamiae Th307]
Length = 483
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S + A+ +AGY + T +Q + LE KD + A+TGTGK+ +F+LP +
Sbjct: 15 FDDLGLSEKVVNAVKSAGYEEPTPIQAGAIPHVLERKDVLGIAQTGTGKTASFVLPMLTL 74
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + +P LIL PTRELA+Q+ KNH I V L+GG F+ +
Sbjct: 75 LEKGRARAR---MP--RTLILEPTRELAAQVEENFDKYGKNHR-INVALLIGGVSFEEQE 128
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 129 RKLERG-ADVLIATPGRLLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIEKICK 184
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+L FSATM E+
Sbjct: 185 LIPFTRQTLFFSATMAPEI 203
>gi|363756288|ref|XP_003648360.1| hypothetical protein Ecym_8261 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891560|gb|AET41543.1| Hypothetical protein Ecym_8261 [Eremothecium cymbalariae
DBVPG#7215]
Length = 775
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 124/215 (57%), Gaps = 9/215 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FDE IS +T+K L +G+I++T +Q ++ L+G D + AKTG+GK++AFL+P IE
Sbjct: 43 FDELPISEVTLKGLKESGFIKLTDIQRDSIPMALKGHDILGAAKTGSGKTLAFLIPVIEK 102
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + L LI+ PTRELA QI E + + H ++GG K +
Sbjct: 103 LYREKWTEFDGL----GALIISPTRELAMQI-YEVLIKIGKHTSFSAGLVIGGKDVKFEM 157
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+ IL+ TPGR+L H++ GL+ L++LVLDEAD LD+GF+K ++ IV
Sbjct: 158 DRISK--INILIGTPGRILQHMDQAVGLTSS--NLQILVLDEADRCLDMGFKKTLDAIVS 213
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGS 595
LP RQ+LLFSAT + L + +D +GS
Sbjct: 214 NLPPDRQTLLFSATQSQSLADLARLSLVDYKSIGS 248
>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
Length = 581
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 23/224 (10%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ +F + GI +K+L + T VQ ++ L+GKD +V A+TG+GK+ AF+L
Sbjct: 1 MNDSKFADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFML 60
Query: 436 PAIEAVLK-----------ATSSST-----TQLVPPIY---VLILCPTRELASQIAAEAI 476
P+I+ +L A+ SS ++ PP Y +L+L PTRELA Q++
Sbjct: 61 PSIQQLLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATK 120
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
+ G+ + TLVGG + L S +I+VATPGRLLDHI K+G V L LK
Sbjct: 121 EFIYGFKGVHIATLVGGMAYGPQINSL-SREVEIVVATPGRLLDHI--KAG-RVNLRNLK 176
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580
+L+LDEAD +LD+GF D+ N+V P RQ+LLFSAT +V
Sbjct: 177 ILILDEADRMLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVV 220
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 123/198 (62%), Gaps = 13/198 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +Q+ ++ + G D + +A+TGTGK+ AF +P I
Sbjct: 2 KTFAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLI 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+ S + ++V LI+ PTRELA Q+A E I L + G+ L + GG
Sbjct: 62 NKI----SINEERIV----ALIMTPTRELAIQVADE-IGKLTKYKGLRSLPIYGGQEIGR 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L+ P QI++ TPGRLLDHI K+ ++L ++ +VLDEAD +LD+GF +D+++I
Sbjct: 113 QIRALKKKP-QIIIGTPGRLLDHINRKT---IKLEDVQTVVLDEADEMLDMGFMEDIQSI 168
Query: 559 VDCLPRRRQSLLFSATMP 576
+ +P RQ+LLFSATMP
Sbjct: 169 LKQVPEERQTLLFSATMP 186
>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
Length = 477
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 10/200 (5%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + ++P +KA+ AGY T +QE + LEG+D + A+TGTGK+ +F LP I
Sbjct: 3 KFSDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + + L+LCPTRELA+Q+ AE + H + L+GG FK +
Sbjct: 63 LLHRGRARARMP-----RSLVLCPTRELAAQV-AENFDIYAKHTKLTKALLIGGVSFK-E 115
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
Q +L +L+ATPGRLLDH E L L G++++V+DEAD +LD+GF D+E I
Sbjct: 116 QDQLIDKGVDVLIATPGRLLDHFERGKLL---LTGVQIMVVDEADRMLDMGFIPDIERIF 172
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 173 GLTPFTRQTLFFSATMAPEI 192
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 136/252 (53%), Gaps = 26/252 (10%)
Query: 372 EEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
EEP K F E GI +A GY T +Q + LEG+D + A+TG+GK+
Sbjct: 40 EEPA-PAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTA 98
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF LP ++A+++A + ++ L+L PTRELA QI ++A L + G+ +V
Sbjct: 99 AFALPMLQALMEAPQT--------LFGLVLAPTRELAYQI-SQAFETLGSTIGVRCAVIV 149
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG L P I+VATPGRLLDH+EN G S+R LK L +DEAD LLD+ F
Sbjct: 150 GGMDMVAQSIALGKKP-HIIVATPGRLLDHLENTKGFSLR--NLKYLAIDEADRLLDMDF 206
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFV 611
+ ++ I+ LPR R + LFSATM T ++++ S+ PV+VS + Y V
Sbjct: 207 GESLDKIIRILPRTRHTYLFSATM---------STKVESLQRASLSNPVRVSVSSKYQTV 257
Query: 612 LVLSIKIQAFYI 623
L Q+ YI
Sbjct: 258 STL----QSSYI 265
>gi|445456165|ref|ZP_21445699.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC047]
gi|444778696|gb|ELX02706.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC047]
Length = 615
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|385239052|ref|YP_005800391.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
TCDC-AB0715]
gi|387122460|ref|YP_006288342.1| DNA/RNA helicase [Acinetobacter baumannii MDR-TJ]
gi|407934207|ref|YP_006849850.1| DNA/RNA helicase [Acinetobacter baumannii TYTH-1]
gi|416146923|ref|ZP_11601470.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii AB210]
gi|421704883|ref|ZP_16144324.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1122]
gi|421708662|ref|ZP_16148035.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1219]
gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
TCDC-AB0715]
gi|333365879|gb|EGK47893.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii AB210]
gi|385876952|gb|AFI94047.1| DNA/RNA helicase, superfamily II [Acinetobacter baumannii MDR-TJ]
gi|407188976|gb|EKE60204.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1122]
gi|407189390|gb|EKE60616.1| DNA/RNA helicase [Acinetobacter baumannii ZWS1219]
gi|407902788|gb|AFU39619.1| DNA/RNA helicase [Acinetobacter baumannii TYTH-1]
Length = 606
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|355751634|gb|EHH55889.1| hypothetical protein EGM_05182 [Macaca fascicularis]
Length = 670
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|281345859|gb|EFB21443.1| hypothetical protein PANDA_005663 [Ailuropoda melanoleuca]
Length = 752
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 74 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 133
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 134 ALYRLQWTSTDGLG----VLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 188
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 189 AERINN--INILVCTPGRLLQHMDET--ICFHATNLQMLVLDEADRILDMGFADTMNAII 244
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 245 ENLPKKRQTLLFSATQTKSV 264
>gi|452983029|gb|EME82787.1| hypothetical protein MYCFIDRAFT_211157 [Pseudocercospora fijiensis
CIRAD86]
Length = 656
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 119/197 (60%), Gaps = 16/197 (8%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK-----ATSSSTTQL 452
G MT VQ T++ L+G+D + +AKTGTGK++AFLLP ++ +++ A S +
Sbjct: 93 GLDTMTEVQAKTINEALKGQDVIAQAKTGTGKTLAFLLPILQRIIEVDPQLANGSGYGRR 152
Query: 453 VP-----PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
P I L++ PTRELA QIAAEA L +N G+ V T VGGT+ R ++ D
Sbjct: 153 GPRTTADDIRALVISPTRELAEQIAAEAKKLTRN-TGVIVQTAVGGTQKSAGLRAIQRDG 211
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR-- 565
C +L+ATPGRL D + + V L LV DEAD LLD GF D++ I+ LP R
Sbjct: 212 CHVLIATPGRLKDLLTDPYS-RVEAPDLSALVFDEADRLLDQGFWPDIQEIMRLLPTRAE 270
Query: 566 --RQSLLFSATMPKELV 580
RQ+L+FSAT+P+E+V
Sbjct: 271 KDRQTLMFSATVPREVV 287
>gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU]
gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
gi|417570347|ref|ZP_12221204.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC189]
gi|417576490|ref|ZP_12227335.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-17]
gi|417875137|ref|ZP_12519958.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH2]
gi|417882960|ref|ZP_12527229.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH4]
gi|421629104|ref|ZP_16069854.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC180]
gi|421685872|ref|ZP_16125638.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-143]
gi|421791028|ref|ZP_16227216.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-2]
gi|424050835|ref|ZP_17788371.1| hypothetical protein W9G_02727 [Acinetobacter baumannii Ab11111]
gi|425754022|ref|ZP_18871889.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-113]
gi|445463866|ref|ZP_21449401.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC338]
gi|445478650|ref|ZP_21454773.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
gi|342226666|gb|EGT91628.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH2]
gi|342236705|gb|EGU01215.1| ATP-dependent RNA helicase [Acinetobacter baumannii ABNIH4]
gi|395550795|gb|EJG16804.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC189]
gi|395569711|gb|EJG30373.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-17]
gi|404570899|gb|EKA75971.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-143]
gi|404669588|gb|EKB37481.1| hypothetical protein W9G_02727 [Acinetobacter baumannii Ab11111]
gi|408703963|gb|EKL49343.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC180]
gi|410403906|gb|EKP55980.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-2]
gi|425497415|gb|EKU63521.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-113]
gi|444774723|gb|ELW98799.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|444780215|gb|ELX04181.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC338]
Length = 615
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|421565722|ref|ZP_16011492.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
gi|402343299|gb|EJU78448.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
Length = 457
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LP++RQ+LLFSAT
Sbjct: 180 MLPKQRQTLLFSAT 193
>gi|432106970|gb|ELK32488.1| Putative ATP-dependent RNA helicase DDX10 [Myotis davidii]
Length = 836
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 34 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 93
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 94 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 148
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 149 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 204
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 205 ENLPKKRQTLLFSATQTKSV 224
>gi|395519419|ref|XP_003763847.1| PREDICTED: ATP-dependent RNA helicase DDX18 isoform 1 [Sarcophilus
harrisii]
Length = 640
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+T G+ MT +Q ++ LEG+D + AKTG+GK++AFL+P+IE ++K
Sbjct: 159 TLKAITEMGFTNMTAIQHKSIRPLLEGRDILAAAKTGSGKTLAFLIPSIELIVK------ 212
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ H L ++GG+ + ++L ++
Sbjct: 213 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMSYHVHTYGL-IMGGSNRSAEAQKL-ANG 270
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +L++GF ++++ I+ LP+RRQ
Sbjct: 271 INIIVATPGRLLDHMQNTPGFMFK--NLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQ 328
Query: 568 SLLFSATMPK------ELVLKREHTYI 588
++LFSAT + ++ LK+E Y+
Sbjct: 329 TMLFSATQTRKVEDLAKISLKKEPLYV 355
>gi|407976248|ref|ZP_11157149.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
gi|407428423|gb|EKF41106.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
Length = 488
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 118/210 (56%), Gaps = 10/210 (4%)
Query: 371 EEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
E+E F + G+S + A+ AGY Q T +Q + + GKD + A+TGTGK+
Sbjct: 4 EQETAQEALTFSDLGLSAKVLSAVVDAGYTQPTPIQAGAIPHAIAGKDVLGIAQTGTGKT 63
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
+F+LP + + + + + LIL PTRELA+Q+ + KNH + + L
Sbjct: 64 ASFVLPMLTRLERGRARARMP-----RTLILEPTRELAAQVEENFVKYGKNHR-LNIALL 117
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
+GG F +R+LE +L+ATPGRLLDH E L L G+ + V+DEAD +LD+G
Sbjct: 118 IGGVSFDEQERKLERG-ADVLIATPGRLLDHFERGKLL---LTGVDIFVIDEADRMLDMG 173
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKELV 580
F D+E I +P RQ+L FSATMP E+
Sbjct: 174 FIPDIERICKLIPFTRQTLFFSATMPPEIT 203
>gi|395519421|ref|XP_003763848.1| PREDICTED: ATP-dependent RNA helicase DDX18 isoform 2 [Sarcophilus
harrisii]
Length = 665
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+T G+ MT +Q ++ LEG+D + AKTG+GK++AFL+P+IE ++K
Sbjct: 184 TLKAITEMGFTNMTAIQHKSIRPLLEGRDILAAAKTGSGKTLAFLIPSIELIVK------ 237
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ H L ++GG+ + ++L ++
Sbjct: 238 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMSYHVHTYGL-IMGGSNRSAEAQKL-ANG 295
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +L++GF ++++ I+ LP+RRQ
Sbjct: 296 INIIVATPGRLLDHMQNTPGFMFK--NLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQ 353
Query: 568 SLLFSATMPK------ELVLKREHTYI 588
++LFSAT + ++ LK+E Y+
Sbjct: 354 TMLFSATQTRKVEDLAKISLKKEPLYV 380
>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
Length = 456
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 116/200 (58%), Gaps = 9/200 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ + P ++ALT AGY T +Q + LEG D + A+TGTGK+ AF LPA+
Sbjct: 3 FENLNLHPAILRALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLPALN- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L AT P +L+L PTRELA+Q+ EA +++VGG + + Q
Sbjct: 62 -LLATPHPAKSRGP--RILVLTPTRELAAQVN-EAARKYGKFLRARTVSIVGGMPYPL-Q 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L S P ILVATPGRLLDH+E + + L+ML+LDEAD +LD+GF D+E I
Sbjct: 117 NKLLSQPIDILVATPGRLLDHMERGR---IDMSRLQMLILDEADRMLDMGFMPDIERISS 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP RQ+L+FSAT ++
Sbjct: 174 ALPSERQTLMFSATFEGQIA 193
>gi|423636821|ref|ZP_17612474.1| hypothetical protein IK7_03230 [Bacillus cereus VD156]
gi|401274649|gb|EJR80621.1| hypothetical protein IK7_03230 [Bacillus cereus VD156]
Length = 458
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 115/201 (57%), Gaps = 12/201 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E GIS L G + T +QE + + GKD + +AKTGTGK++AF+LP +
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + S + LI+ PTRELA QI E +L + I VL + GG
Sbjct: 65 EKIDPECSD--------VQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQ 116
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R+L+ + I+VATPGRLLDHI + ++ L L +VLDEAD +L GF D+E+I
Sbjct: 117 QLRKLKGN-THIVVATPGRLLDHIRRE---TIDLSNLSTIVLDEADQMLYFGFLYDIEDI 172
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+D P +Q +LFSATMPK++
Sbjct: 173 LDETPGSKQMMLFSATMPKDI 193
>gi|399114783|emb|CCG17579.1| ATP-dependent rna helicase [Taylorella equigenitalis 14/56]
Length = 581
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 23/224 (10%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ +F + GI +K+L + T VQ ++ L+GKD +V A+TG+GK+ AF+L
Sbjct: 1 MNDSKFADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFML 60
Query: 436 PAIEAVLK-----------ATSSST-----TQLVPPIY---VLILCPTRELASQIAAEAI 476
P+I+ +L A+ SS ++ PP Y +L+L PTRELA Q++
Sbjct: 61 PSIQQLLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATK 120
Query: 477 ALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLK 536
+ G+ + TLVGG + L S +I+VATPGRLLDHI K+G V L LK
Sbjct: 121 EFIYGFKGVHIATLVGGMAYGPQINSL-SREVEIVVATPGRLLDHI--KAG-RVNLRNLK 176
Query: 537 MLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELV 580
+L+LDEAD +LD+GF D+ N+V P RQ+LLFSAT +V
Sbjct: 177 ILILDEADRMLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVV 220
>gi|384144733|ref|YP_005527443.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii
MDR-ZJ06]
gi|347595226|gb|AEP07947.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii
MDR-ZJ06]
Length = 610
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 7 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 67 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 127 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 181
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 182 LEAISDLAANRGQTLMFSATFADRII 207
>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
Length = 495
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 117/200 (58%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E G+S +KAL G+ + T +Q T+ LEG D + +A+TGTGK+ AF +P I
Sbjct: 3 KFNELGVSAPIMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPLIN 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + + LI+ PTRELA Q+A E I L + L + GG
Sbjct: 63 KI--------NAKLRKVQGLIVAPTRELAIQVAEE-INRLAKFKSVRALAIYGGQPMDRQ 113
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ P QI+VATPGRLLDH+ K+ +R+ + VLDEAD +L++GF D+ I+
Sbjct: 114 IRALKDGP-QIVVATPGRLLDHMRRKT---IRIDQVHTAVLDEADEMLNMGFIDDIREIL 169
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMPKE+
Sbjct: 170 KGIPEERQTLLFSATMPKEI 189
>gi|406864540|gb|EKD17585.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 628
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 138/250 (55%), Gaps = 22/250 (8%)
Query: 376 LSQKRFDECG----ISPLTIKALTA-AGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGK 429
L RF + + P+ ++ +T + M VQ ATL L + D + +AKTGTGK
Sbjct: 74 LDTPRFADLAEGKLLHPILLQTITQDLKFDHMMPVQAATLHELLANRIDCLAQAKTGTGK 133
Query: 430 SIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
+IAFLLPAI+ ++ + I +L++ PTRELA QIA EA ALLK V
Sbjct: 134 TIAFLLPAIQTLINKNRKPGSG----ISLLVISPTRELAMQIAKEATALLKRLPQYKVSF 189
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549
+GGT +++ + C IL+ATPGRL DH+ ++ + L LVLDEAD LLD+
Sbjct: 190 AIGGTNKTTEEKSILRG-CDILIATPGRLYDHLSDERIVDA-FSNLDTLVLDEADRLLDM 247
Query: 550 GFRKDVENIVDCLP----RRRQSLLFSATMP------KELVLKREHTYIDTVGLGSVETP 599
GF D++ I+ CLP +RQ +LFSAT+ LVL +++ +I T+ G V T
Sbjct: 248 GFMNDLKKIIQCLPDKAATQRQGMLFSATIAPHVEKVAHLVLSKDYKFISTIPEGDVNTH 307
Query: 600 VKVSKYNIYV 609
+V + I V
Sbjct: 308 ERVPQELIVV 317
>gi|171690426|ref|XP_001910138.1| hypothetical protein [Podospora anserina S mat+]
gi|170945161|emb|CAP71272.1| unnamed protein product [Podospora anserina S mat+]
Length = 664
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 137/231 (59%), Gaps = 18/231 (7%)
Query: 381 FDECGISPLTIKALT-AAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+ G+ ++++T Y MT VQ T++A L GKD V +AKTGTGK++AFL+P ++
Sbjct: 77 LESLGVHNALVRSITEGMRYEDMTEVQSLTINAALAGKDLVAQAKTGTGKTLAFLVPILQ 136
Query: 440 AVLKATSSSTTQLVP------PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
++ + P + +++ PTRELA QIA EA ++K GI V T VGG
Sbjct: 137 KIIADQPALAEARRPVKARSDDVRAIVISPTRELAEQIAVEAAKIVKG-TGIKVQTAVGG 195
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENK-SGLSVRLMGLKMLVLDEADHLLDLGFR 552
T+ ++ +++ + C +LV TPGRL D + ++ SG++ L L LDEAD +LD+GF
Sbjct: 196 TQKRMSLQKIRYEGCHLLVGTPGRLADLLTDEYSGVAA--PNLTALCLDEADRMLDVGFD 253
Query: 553 KDVENIVDCLPRR----RQSLLFSATMPKELV-LKREHTYIDTVGLGSVET 598
+++ I+ LP R RQ+LL+SATMPK++V L R+ YID +T
Sbjct: 254 AELDTILKALPNRKDTPRQTLLYSATMPKDVVGLARK--YIDPTNFEFAQT 302
>gi|431894767|gb|ELK04560.1| ATP-dependent RNA helicase DDX18 [Pteropus alecto]
Length = 663
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 183 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 237
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P +LIL PTRELA Q L+ +H L + GG+ + ++L ++
Sbjct: 238 -KFMPRNGTGILILSPTRELAMQTFGVLKELMTHHVHTYGLVM-GGSNRSAEAQKL-ANG 294
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 295 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 352
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 353 TMLFSATQTRKVEDLARISLKKEPLYV 379
>gi|337278667|ref|YP_004618138.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729743|gb|AEG92119.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 486
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 123/209 (58%), Gaps = 5/209 (2%)
Query: 371 EEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
++ P++ F ++ +A+ GY MT +Q + L G+D + A+TGTGK+
Sbjct: 2 QQSPVVMTDSFSNLSLAEPLARAVAEMGYETMTPIQAQAIPVVLTGRDVMGAAQTGTGKT 61
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
AF LP ++ +LK +SST+ P+ L+L PTRELA Q+ A+ + L + + +
Sbjct: 62 AAFSLPLLQRLLKHENSSTSPARHPVRALVLLPTRELADQV-AQQVKLYAKYTNLRSAVV 120
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
GG K L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+G
Sbjct: 121 FGGMDMKPQTLELKRG-VEVLVATPGRLLDHIEAKNAV---LGQVEYVVLDEADRMLDIG 176
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEL 579
F D++ I+ LP++R +LLFSAT E+
Sbjct: 177 FLPDLQRILSYLPKQRTTLLFSATFSPEI 205
>gi|385341673|ref|YP_005895544.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|385857479|ref|YP_005903991.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|416177826|ref|ZP_11610195.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|416191808|ref|ZP_11616236.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|416203389|ref|ZP_11620069.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|421549077|ref|ZP_15995100.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|421551035|ref|ZP_15997035.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|421567841|ref|ZP_16013574.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
gi|433467565|ref|ZP_20425019.1| helicase domain protein [Neisseria meningitidis 87255]
gi|433469626|ref|ZP_20427044.1| helicase domain protein [Neisseria meningitidis 98080]
gi|433471689|ref|ZP_20429073.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|433477861|ref|ZP_20435181.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|433492813|ref|ZP_20449904.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|433497112|ref|ZP_20454147.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|433499175|ref|ZP_20456182.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|433501147|ref|ZP_20458132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|433503550|ref|ZP_20460506.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
gi|433522140|ref|ZP_20478828.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|433526315|ref|ZP_20482945.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|433537033|ref|ZP_20493537.1| helicase domain protein [Neisseria meningitidis 77221]
gi|433539196|ref|ZP_20495671.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|402324994|gb|EJU60413.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|402328569|gb|EJU63936.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|402343276|gb|EJU78427.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
gi|432202399|gb|ELK58463.1| helicase domain protein [Neisseria meningitidis 87255]
gi|432202795|gb|ELK58852.1| helicase domain protein [Neisseria meningitidis 98080]
gi|432207929|gb|ELK63914.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|432215526|gb|ELK71415.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|432227744|gb|ELK83450.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|432233197|gb|ELK88829.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|432233602|gb|ELK89228.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|432235120|gb|ELK90737.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|432239020|gb|ELK94580.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
gi|432258992|gb|ELL14271.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|432261079|gb|ELL16336.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|432272919|gb|ELL28021.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|432272999|gb|ELL28100.1| helicase domain protein [Neisseria meningitidis 77221]
Length = 457
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LP++RQ+LLFSAT
Sbjct: 180 MLPKQRQTLLFSAT 193
>gi|169794570|ref|YP_001712363.1| ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
Length = 619
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 7 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 67 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 127 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 181
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 182 LEAISDLAANRGQTLMFSATFADRII 207
>gi|395003518|ref|ZP_10387653.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394318531|gb|EJE54950.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 499
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +Q + L G+D + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK SSST+ P+ L+L PTRELA Q+ A+ IAL + + + GG K
Sbjct: 65 LLKHESSSTSPARHPVRALVLLPTRELADQV-AQQIALYAKYTKLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 IELKKG-VEVLVATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 YLPKQRTTLLFSATFSPEI 198
>gi|385855466|ref|YP_005901979.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
Length = 457
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LP++RQ+LLFSAT
Sbjct: 180 MLPKQRQTLLFSAT 193
>gi|307103042|gb|EFN51307.1| hypothetical protein CHLNCDRAFT_28229 [Chlorella variabilis]
Length = 518
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 135/246 (54%), Gaps = 14/246 (5%)
Query: 364 GEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKA 423
E E ++ + + KRFDE IS + + L A Y +T VQ A L L G+D + A
Sbjct: 53 AEGGEAPQQPSVAAAKRFDELPISEYSKQGLREAKYFSLTAVQRAALPHALCGRDVLGAA 112
Query: 424 KTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD 483
KTG+GK++AFLLP +E + +A S L L++ PTRELA QI E + + HD
Sbjct: 113 KTGSGKTLAFLLPVVEKLYRARWSKLDGL----GALVISPTRELALQIFDELRKVGRRHD 168
Query: 484 GIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEA 543
L L+GG K +Q R+ ILV TPGRLL H++ G L++LVLDEA
Sbjct: 169 FSAGL-LIGGKDVKEEQARVHG--MNILVCTPGRLLQHMDETPGFDAG--QLQVLVLDEA 223
Query: 544 DHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL-----VLKREHTYIDTVGLGSVET 598
D +LD+GF + IV +PR+RQ+LLFSAT K + + ++ YI + T
Sbjct: 224 DRILDMGFSATLNAIVANIPRQRQTLLFSATQTKSVKDLARLSLKDPEYISVHAEAAAPT 283
Query: 599 PVKVSK 604
P+++ +
Sbjct: 284 PLRLQQ 289
>gi|121635112|ref|YP_975357.1| ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
Length = 483
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 31 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 90
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 91 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 149
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 150 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 205
Query: 561 CLPRRRQSLLFSAT 574
LP++RQ+LLFSAT
Sbjct: 206 MLPKQRQTLLFSAT 219
>gi|365097957|ref|ZP_09331724.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363413202|gb|EHL20410.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 505
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +Q + L G+D + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK SSST+ P+ L+L PTRELA Q+ A+ IAL + + + GG K
Sbjct: 65 LLKHESSSTSPARHPVRALVLLPTRELADQV-AQQIALYAKYTKLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 IELKKG-VEVLVATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 FLPKQRTTLLFSATFSPEI 198
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P ++A+T AGY + T +Q + + GKD + A+TGTGK+ F LP +
Sbjct: 3 FADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ LIL PTRELA Q+ E++ H + + + GG + Q
Sbjct: 63 IARHANTSTSPARHQTRALILAPTRELAMQV-FESVKTYSKHLPLRSVCVYGGVDIRPQQ 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +I++ATPGRLLDH+E K S+ L +++LVLDEAD +LD+GF D++ I+
Sbjct: 122 AELRRG-IEIVIATPGRLLDHLEQK---SINLSQVEVLVLDEADRMLDMGFIPDIKRILA 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++RQSLLFSAT E+
Sbjct: 178 LLPKQRQSLLFSATFSDEI 196
>gi|385340313|ref|YP_005894185.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
Length = 457
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ + ALTA GY T +Q A + L G D + A+TGTGK+ AF+LP++E
Sbjct: 5 FSSLGLGTELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ++ST+ + P+ +L+L PTRELA QI + +KN + L GG
Sbjct: 65 LKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLP-LRHTVLFGGMNMDKQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 124 ADLRAG-CEIVVATVGRLLDHVKQK---NISLNKVEIVVLDEADRMLDMGFIDDIRKIMQ 179
Query: 561 CLPRRRQSLLFSAT 574
LP++RQ+LLFSAT
Sbjct: 180 MLPKQRQTLLFSAT 193
>gi|194222171|ref|XP_001916624.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Equus caballus]
Length = 623
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 143 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 196
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 197 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHIHTYGL-IMGGSNRSAEAQKL-ANG 254
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 255 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 312
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 313 TMLFSATQTRKVEDLARISLKKEPLYV 339
>gi|426221192|ref|XP_004004794.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Ovis aries]
Length = 670
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 244 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 432
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 115/194 (59%), Gaps = 8/194 (4%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
I P+ KALT AGY T +QE ++ + LEGKD + A+TGTGK+ AF +P ++ + K
Sbjct: 9 IEPIQ-KALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKNQ 67
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
+ S I LIL PTRELA QI E L H I + GG K Q R+
Sbjct: 68 NKSDKSRT--IKALILAPTRELAIQIE-ENFTLYSKHTNIKNTVIFGGVSQK-PQTRILG 123
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
+ IL+ATPGRLLD I+ K + L +K VLDEAD + D+G +DV+ IV LP+
Sbjct: 124 EGVDILIATPGRLLDLIDQKY---IDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180
Query: 566 RQSLLFSATMPKEL 579
RQ+LLFSATMP E+
Sbjct: 181 RQNLLFSATMPSEV 194
>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
str. Alaska E43]
gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
Alaska E43]
Length = 432
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 115/194 (59%), Gaps = 8/194 (4%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
I P+ KALT AGY T +QE ++ + LEGKD + A+TGTGK+ AF +P ++ + K
Sbjct: 9 IEPIQ-KALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKNQ 67
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
+ S I LIL PTRELA QI E L H I + GG K Q R+
Sbjct: 68 NKSDKSRT--IKALILAPTRELAIQIE-ENFTLYSKHTNIKNTVIFGGVSQK-PQTRILG 123
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
+ IL+ATPGRLLD I+ K + L +K VLDEAD + D+G +DV+ IV LP+
Sbjct: 124 EGVDILIATPGRLLDLIDQKY---IDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKV 180
Query: 566 RQSLLFSATMPKEL 579
RQ+LLFSATMP E+
Sbjct: 181 RQNLLFSATMPSEV 194
>gi|402574642|ref|YP_006623985.1| DNA/RNA helicase [Desulfosporosinus meridiei DSM 13257]
gi|402255839|gb|AFQ46114.1| DNA/RNA helicase, superfamily II [Desulfosporosinus meridiei DSM
13257]
Length = 500
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 125/199 (62%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +S L ++++ G+ + T +QE T+ + +EGKD + +A+TGTGK+ A+ +P +E
Sbjct: 4 FTDLNLSELVMRSIINMGFEETTPIQEQTIPSAMEGKDLIGQAQTGTGKTAAYGIPLVER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ + + I ++L PTRELA Q+A E + + I L + GG
Sbjct: 64 IMGQSEN--------IQGIVLAPTRELAVQVAEE-LNKIGQFKRIHALPIYGGQGIDWQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P I+VATPGRL+DH+ K+ +RL +K++VLDEAD +L++GF +D+E I+
Sbjct: 115 RALKKRP-HIIVATPGRLMDHMRRKT---IRLHDIKIVVLDEADEMLNMGFLEDIETILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+++
Sbjct: 171 EVPEERQTLLFSATMPRQI 189
>gi|1498229|emb|CAA67295.1| RNA helicase [Homo sapiens]
Length = 610
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 130 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 184
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 185 -RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNG 241
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 242 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 299
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 300 TMLFSATQTRKVEDLARISLKKEPLYV 326
>gi|406981744|gb|EKE03149.1| hypothetical protein ACD_20C00242G0002 [uncultured bacterium]
Length = 634
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 124/205 (60%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+++ RF+E GIS + A+ G+ + + +Q + L GKD + +A+TGTGK+ AF +
Sbjct: 20 MTKLRFEELGISTEILAAVKDMGFEEASPIQSEAIPILLSGKDLIGQAQTGTGKTAAFAI 79
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P IE + +S Q V ILCPTREL Q++ E LLK + + V + GG
Sbjct: 80 PVIEKL--DPNSKELQAV------ILCPTRELVIQVSEEFRKLLKYKENLWVTPIYGGQE 131
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ R L+ Q+++ TPGR +DH+ S +++ ++ +VLDEAD +LD+GFR+D+
Sbjct: 132 IERQLRTLKRG-VQVVIGTPGRTMDHMRRGS---IKMHSVQTVVLDEADEMLDMGFREDM 187
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I+ P+ RQ+++FSATM K+++
Sbjct: 188 EIILKDTPKERQTIMFSATMAKDIL 212
>gi|66810125|ref|XP_638786.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
gi|74897069|sp|Q54Q94.1|DDX10_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx10; AltName:
Full=DEAD box protein 10
gi|60467406|gb|EAL65432.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
Length = 878
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 149/272 (54%), Gaps = 19/272 (6%)
Query: 363 NGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVK 422
N ++KEK + S F + IS LT+KALT + ++++T +Q A+L L G+D +
Sbjct: 125 NDKEKEKEYKIDYPSATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGA 184
Query: 423 AKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
AKTG+GK+++F+LP +E + + I ++L PTRELA QI A+ K H
Sbjct: 185 AKTGSGKTLSFILPILETLWRNRWGRDDG----IGAIVLSPTRELAIQIFDVLKAVGKYH 240
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
L ++GG V Q + + + IL+ATPGRLL H++ G LK+LVLDE
Sbjct: 241 TFSAGL-IIGGRN--VQQEKDKINAMNILIATPGRLLQHMDETYGFDCS--NLKILVLDE 295
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL-----VLKREHTYIDTVGLGSVE 597
AD +LDLGF K + +IV+ LPR RQ+LLFSAT K + + +E YI
Sbjct: 296 ADRILDLGFSKCLNSIVENLPRERQTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITT 355
Query: 598 TPVKVSKYNIYVFVLVLSIKIQAFYIICFVYT 629
TP N+ + V+ ++++ + F+ T
Sbjct: 356 TP-----QNLTQTLCVIPLEMKLNMLFSFIKT 382
>gi|390456495|ref|ZP_10242023.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus peoriae
KCTC 3763]
Length = 526
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 13/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E + P I+A+T G+ + T +Q ++ L+GKD + +A+TGTGK+ AF +P I
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAISIPIALQGKDMIGQAQTGTGKTAAFGIPLISK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K I LI+ PTRELA Q+A E I L G+ L + GG
Sbjct: 64 ISKNDEK--------IRALIMAPTRELAIQVAEE-IEKLSRFKGLRTLPIYGGQDIVRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P QI++ TPGRLLDHI K+ ++L + +VLDEAD +LD+GF +D+++I+
Sbjct: 115 RALKKKP-QIIIGTPGRLLDHINRKT---IKLEDVNTVVLDEADEMLDMGFMEDIQSILK 170
Query: 561 CLPRRRQSLLFSATMP 576
+P RQ++LFSATMP
Sbjct: 171 QVPDERQTMLFSATMP 186
>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 487
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +QE + L+GKD + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++K ++ST+ P+ L+L PTRELA Q+ AE + L + + + GG K
Sbjct: 65 MMKHENASTSPARHPVRALVLLPTRELAVQV-AEQVKLYAKYTNLNSAVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 LELKKG-VEVLVATPGRLLDHIEAKNTV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++R +LLFSAT E+
Sbjct: 180 YLPKQRITLLFSATFSPEI 198
>gi|187734959|ref|YP_001877071.1| DEAD/DEAH box helicase [Akkermansia muciniphila ATCC BAA-835]
gi|187425011|gb|ACD04290.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 604
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GISP ++A+ G+ + +QE + A + G D V + TG+GK++AF +PA+E
Sbjct: 7 FSALGISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALEC 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + VL LCPTRELA QI E L DG+ + + GG+ F+
Sbjct: 67 IDPEERC--------VQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQL 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L Q +V TPGR++D +E+ + +RL GL+ML+LDEAD +LD+GF +D+E I D
Sbjct: 119 DALRRG-VQFVVGTPGRVMDLMESGA---LRLDGLRMLILDEADEMLDMGFLEDIERIAD 174
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P +Q+L FSATM E+
Sbjct: 175 AMPEGKQTLFFSATMSPEI 193
>gi|445421868|ref|ZP_21436173.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
gi|444757138|gb|ELW81669.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
Length = 622
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 123/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + KAL + G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
A+ + + V +L++ PTRELA Q+ +AIA +++ G+ V ++GG
Sbjct: 63 NALAGQDTFVPFKERMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QIKLDSVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R+Q+L+FSAT ++
Sbjct: 178 LEAISDLALNRKQTLMFSATFAPRII 203
>gi|427721123|ref|YP_007069117.1| DEAD/DEAH box helicase [Calothrix sp. PCC 7507]
gi|427353559|gb|AFY36283.1| DEAD/DEAH box helicase domain protein [Calothrix sp. PCC 7507]
Length = 438
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 19/226 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S I+A+T GY + T +Q+ + L G D + A+TGTGK+ +F LP +
Sbjct: 3 FSNLGLSNEIIRAVTELGYTKPTPIQKQAIPVILSGGDLLAGAQTGTGKTASFTLPLLHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + ST+ PPI LIL PTRELA+Q+ + ++ + + + + GG Q
Sbjct: 63 LSNDSVKSTSNPYPPIRALILTPTRELAAQVES-SVREYGKYLNLNTMAMFGGVSIN-PQ 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+RL ILVATPGRLLDH++ +V L +++LVLDEAD +LD+GF +D+ I+
Sbjct: 121 KRLLKGRVDILVATPGRLLDHVQQG---TVNLSHVEVLVLDEADRMLDMGFIRDIRRILS 177
Query: 561 CLPRRRQSLLFSATM--------------PKELVLKREHTYIDTVG 592
LP++RQ+LLF AT PK + + R + DTV
Sbjct: 178 LLPKQRQNLLFFATFSDKIKALATGLLNHPKMIEVARRNVTADTVA 223
>gi|170736688|ref|YP_001777948.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia MC0-3]
gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 465
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 12/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++P T+ L GY+ MT +Q A+L L G+D + +AKTG+GK+ AF L A+ A
Sbjct: 9 FSALPLTPATLANLAQLGYVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSL-ALLA 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L A S + +ILCPTRELA Q+A E L + + + VLTL GGT +
Sbjct: 68 RLDARSFD-------VQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQA 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ LE I+V TPGR++DH++ +++L L LVLDEAD +LD+GF D+ +
Sbjct: 121 QSLEHG-AHIVVGTPGRIMDHLDRG---NLKLDALNTLVLDEADRMLDMGFFDDIAKVAR 176
Query: 561 CLPRRRQSLLFSATMP 576
P RQ+LLFSAT P
Sbjct: 177 MCPTTRQTLLFSATYP 192
>gi|448124024|ref|XP_004204815.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
gi|358249448|emb|CCE72514.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
Length = 578
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 122/198 (61%), Gaps = 13/198 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FDE G+S T+KA+ G+ +MT VQ T+ L G+D + AKTG+GK++AFL+PAIE
Sbjct: 115 KFDEIGLSEPTLKAIKDLGFSKMTEVQSRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 174
Query: 440 AV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+ LK + T V+I+ PTRELA QI A L+ +H + + G R +
Sbjct: 175 LLYSLKFKPRNGTG------VIIISPTRELALQIFGVARELMAHHTQTFGIVIGGANRRQ 228
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
++ ++ +L+ATPGRLLDH++N G R LK LV+DEAD +L++GF +++
Sbjct: 229 EAEKLMKG--VNLLIATPGRLLDHLQNTKGFVFR--NLKALVIDEADRILEIGFEEEMRQ 284
Query: 558 IVDCLPRR-RQSLLFSAT 574
I+ LP RQS+LFSAT
Sbjct: 285 IIKILPNEDRQSMLFSAT 302
>gi|422802922|ref|ZP_16851414.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
Length = 398
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 116/197 (58%), Gaps = 18/197 (9%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVL 442
+ P + L GY+ MT VQ A L A L GKD V+AKTG+GK+ AF LL I+A L
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASL 69
Query: 443 KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
T + L+LCPTRELA Q+A E L + +LTL GG F + +
Sbjct: 70 FQTQA-----------LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L+ P I+VATPGRLLDH++ + V L L MLV+DEAD +LD+GF +++++
Sbjct: 119 LQHAP-HIIVATPGRLLDHLQKGT---VSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA 174
Query: 563 PRRRQSLLFSATMPKEL 579
P RQ+LLFSAT P+ +
Sbjct: 175 PASRQTLLFSATWPEAI 191
>gi|448121647|ref|XP_004204262.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
gi|358349801|emb|CCE73080.1| Piso0_000094 [Millerozyma farinosa CBS 7064]
Length = 578
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 122/198 (61%), Gaps = 13/198 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FDE G+S T+KA+ G+ +MT VQ T+ L G+D + AKTG+GK++AFL+PAIE
Sbjct: 115 KFDEIGLSEPTLKAIKDLGFSKMTEVQSRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 174
Query: 440 AV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+ LK + T V+I+ PTRELA QI A L+ +H + + G R +
Sbjct: 175 LLYSLKFKPRNGTG------VIIISPTRELALQIFGVARELMAHHTQTFGIVIGGANRRQ 228
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
++ ++ +L+ATPGRLLDH++N G R LK LV+DEAD +L++GF +++
Sbjct: 229 EAEKLMKG--VNLLIATPGRLLDHLQNTKGFVFR--NLKALVIDEADRILEIGFEEEMRQ 284
Query: 558 IVDCLPRR-RQSLLFSAT 574
I+ LP RQS+LFSAT
Sbjct: 285 IIKILPNEDRQSMLFSAT 302
>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
[Helicobacter felis ATCC 49179]
Length = 469
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 116/196 (59%), Gaps = 14/196 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P +K++ AG++Q + +QE + L+G+D + +A+TGTGK+ AF LP I
Sbjct: 20 FKDLGLHPRILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHN 79
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ S + LI+ PTRELA QI+ E L K+ + + GG +
Sbjct: 80 LKNDRS---------VEALIITPTRELAMQISDEIFRLGKS-SRTRTICIYGGQSIRKQC 129
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
LE P Q+++ATPGRLLDH++NK ++ K++VLDE+D +LD+GF D+E I D
Sbjct: 130 ELLEKRP-QVMIATPGRLLDHLKNK---RLKHFNPKVVVLDESDEMLDMGFLDDIEEIFD 185
Query: 561 CLPRRRQSLLFSATMP 576
LP Q LLFSATMP
Sbjct: 186 YLPNDAQILLFSATMP 201
>gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
[Acinetobacter baumannii AB900]
gi|421680324|ref|ZP_16120179.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC111]
gi|410389693|gb|EKP42104.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC111]
Length = 586
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|424903669|ref|ZP_18327182.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
gi|390931542|gb|EIP88943.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 508
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 41 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 100
Query: 440 -AVLKATSS----------------STTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 101 FAQLQKTQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 160
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 161 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 216
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D++ IV P RQ++LFSAT+
Sbjct: 217 ADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 249
>gi|342865119|gb|EGU71680.1| hypothetical protein FOXB_17809 [Fusarium oxysporum Fo5176]
Length = 608
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 155/285 (54%), Gaps = 35/285 (12%)
Query: 377 SQKRFDEC----GISPLTIKALTAAGYIQ-MTRVQEATLSACLEGK--DAVVKAKTGTGK 429
+ +RFD ++PL ++ +T + MT VQ AT+ L D +V+A+TGTGK
Sbjct: 105 TSRRFDSLLENNKVNPLIVRTITNDMKFEFMTPVQAATMDELLPPNRSDCLVQARTGTGK 164
Query: 430 SIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
++AFL+PA++ ++ ++ I +L++ PTRELA QI+AEA +L+ V
Sbjct: 165 TMAFLIPALQTMINQNRAAGDG----ISLLVISPTRELALQISAEAKKVLQGLPKYRVQV 220
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549
+GGT ++R + + C+IL+ATPGRLLDH+ N+ + + L LVLDEAD LLD+
Sbjct: 221 AIGGTNKDREERAILAG-CEILIATPGRLLDHMSNED-IVYSMRKLNTLVLDEADRLLDM 278
Query: 550 GFRKDVENIVDCLPRR----RQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETP 599
GF KD+ +IV LP + RQ +LFSAT+ LVL + +I T+ G T
Sbjct: 279 GFMKDLRDIVGRLPDKTKSDRQGMLFSATIAPHVEQVAGLVLSPGYKFISTIPAGEANTH 338
Query: 600 VKVSKYNIYV--FVLVLSIKI----------QAFYIICFVYTISM 632
+V ++ + V F V + QAF I F T ++
Sbjct: 339 ERVPQFLVQVPTFADVAPAMVGCIREEATRGQAFKAILFAPTAAI 383
>gi|440893673|gb|ELR46355.1| ATP-dependent RNA helicase DDX18 [Bos grunniens mutus]
Length = 671
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 191 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 244
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 245 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 302
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 303 INIVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 360
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 361 TMLFSATQTRKVEDLARISLKKEPLYV 387
>gi|403050220|ref|ZP_10904704.1| ATP-dependent RNA helicase [Acinetobacter bereziniae LMG 1003]
Length = 622
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 123/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + KAL + G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
A+ + + V +L++ PTRELA Q+ +AIA +++ G+ V ++GG
Sbjct: 63 NALAGQDTFVPFKERMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QIKLDSVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R+Q+L+FSAT ++
Sbjct: 178 LEAISDLALNRKQTLMFSATFAPRII 203
>gi|397165606|ref|ZP_10489055.1| ATP-independent RNA helicase dbpA [Enterobacter radicincitans DSM
16656]
gi|396092888|gb|EJI90449.1| ATP-independent RNA helicase dbpA [Enterobacter radicincitans DSM
16656]
Length = 456
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 119/201 (59%), Gaps = 26/201 (12%)
Query: 390 TIKALTAA--------GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAI 438
T+ AL AA GY+ MT VQ A L A L GKD V+AKTG+GK+ AF LL I
Sbjct: 6 TLNALPAAQIENLNDLGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI 65
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
+A T S LILCPTRELA Q+A+E L + I VLTL GG F
Sbjct: 66 DASRFQTQS-----------LILCPTRELADQVASELRRLARYMPNIKVLTLCGGQPFGA 114
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
+ L+ P I+VATPGRLLDH++ + V L L+ LV+DEAD +LD+GF + ++++
Sbjct: 115 QRDSLQHAP-HIIVATPGRLLDHLQKNT---VTLDNLQTLVMDEADRMLDMGFSEAIDDV 170
Query: 559 VDCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSAT P+ +
Sbjct: 171 IRFAPASRQTLLFSATWPEAI 191
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 164 FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 223
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+Q+ + I L I +VGG KV +
Sbjct: 224 LL-----FRPKRVPAIRVLILTPTRELAAQVHS-MIEKLAQFTDIRCCLIVGGLSTKVQE 277
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +++LDEAD LL+LGF +++ ++
Sbjct: 278 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAVVILDEADRLLELGFSAEIQELIR 334
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+RRQ++LFSATM +E+
Sbjct: 335 MCPKRRQTMLFSATMTEEI 353
>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
gi|432679904|ref|ZP_19915289.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE143]
gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
gi|431222327|gb|ELF19609.1| ATP-independent RNA helicase dbpA [Escherichia coli KTE143]
Length = 457
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 116/197 (58%), Gaps = 18/197 (9%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVL 442
+ P + L GY+ MT VQ A L A L GKD V+AKTG+GK+ AF LL I+A L
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69
Query: 443 KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
T + L+LCPTRELA Q+A E L + +LTL GG F + +
Sbjct: 70 FQTQA-----------LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L+ P I+VATPGRLLDH++ + V L L MLV+DEAD +LD+GF +++++
Sbjct: 119 LQHAP-HIIVATPGRLLDHLQKGT---VSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA 174
Query: 563 PRRRQSLLFSATMPKEL 579
P RQ+LLFSAT P+ +
Sbjct: 175 PASRQTLLFSATWPEAI 191
>gi|334329846|ref|XP_001363225.2| PREDICTED: ATP-dependent RNA helicase DDX18 [Monodelphis domestica]
Length = 642
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+P+IE ++K
Sbjct: 161 TLKAIAEMGFTNMTEIQHKSIRPLLEGRDILAAAKTGSGKTLAFLIPSIELIVK------ 214
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 215 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 272
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +L++GF ++++ I+ LP+RRQ
Sbjct: 273 INIIVATPGRLLDHMQNTPGFMFK--NLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQ 330
Query: 568 SLLFSATMPK------ELVLKREHTYI 588
++LFSAT + ++ LK+E Y+
Sbjct: 331 TMLFSATQTRKVEDLAKISLKKEPLYV 357
>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
Length = 454
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 120/205 (58%), Gaps = 10/205 (4%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
IL FD G+S IKA+ + GY T +Q AT+ L+ KD + A+TGTGK+ +F+
Sbjct: 2 ILPLDSFDNLGLSKKVIKAIKSVGYTTPTPIQSATIPHILQKKDVLGIAQTGTGKTASFV 61
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
LP + + K + + +P LIL PTRELA+Q+ E H + V L+GG
Sbjct: 62 LPMLTLLEKGRARAR---IP--RTLILEPTRELAAQV-KENYDKYGIHHNLNVALLIGGV 115
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F+ R+LE IL+ATPGRLLDH E L L+G+++LV+DEAD +LD+GF +
Sbjct: 116 SFEHQDRKLERG-ADILIATPGRLLDHFERGKLL---LVGVEILVIDEADRMLDMGFIPN 171
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+E I P RQ+L FSATM E+
Sbjct: 172 IERICKLTPFTRQTLFFSATMAPEI 196
>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
Length = 462
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 12/204 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S F +SP +ALTA GY MT VQ +L L+G+D + +A+TG+GK+ AF +
Sbjct: 1 MSNTDFSALPLSPAQFEALTALGYEHMTPVQAQSLPLVLKGRDVIARARTGSGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
++ + + L+LCPTRELA Q++ E L I ++TL GG
Sbjct: 61 GLLQTINPRFFG--------VQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
F LE I+V TPGR+LDH++ K+ + L GLK+LVLDEAD +LD+GF +
Sbjct: 113 FGPQVGSLEHG-AHIVVGTPGRILDHLQRKT---LSLDGLKVLVLDEADRMLDMGFADSM 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E+I+ P+ RQ+LLFSAT P+ +
Sbjct: 169 ESIISETPKSRQTLLFSATYPENI 192
>gi|403530552|ref|YP_006665081.1| ATP-dependent RNA helicase [Bartonella quintana RM-11]
gi|403232623|gb|AFR26366.1| ATP-dependent RNA helicase [Bartonella quintana RM-11]
Length = 467
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+LP +
Sbjct: 8 FDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLTL 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ NH + V L+GG F+
Sbjct: 68 LEKGRARARMP-----RTLILEPTRELAAQVEENFDKYGINHR-LNVALLIGGVSFEHQD 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF D+E I
Sbjct: 122 RKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGFIPDIERICK 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 178 LTPFTRQTLFFSATMAPEI 196
>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
Length = 551
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 121/202 (59%), Gaps = 13/202 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E G+S ++++ GY++ T +QE T+ L GKD + +A+TGTGK+ AF LP +E
Sbjct: 2 KFNELGLSQELLQSIAEHGYVEATPIQEKTIPLTLVGKDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + I LI+ PTRELA Q A E L ++ + V + GG +
Sbjct: 62 HIDLNNKN--------IQALIVSPTRELAIQTADELKKLGRDKH-VDVQVVFGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L+S P QILV TPGRLLDH K +V+L + LVLDEAD +L++GF D+E I+
Sbjct: 113 IQNLKSHP-QILVGTPGRLLDHTNRK---TVKLDHVNTLVLDEADEMLNMGFLDDIEAII 168
Query: 560 DCLPRRRQSLLFSATMPKELVL 581
+ P RQ+LLFSATMP + L
Sbjct: 169 EKTPATRQTLLFSATMPPAIKL 190
>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
Length = 528
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 121/205 (59%), Gaps = 12/205 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ + +F+ IS A+ G+ + + +QE + L GKD + +A+TGTGK+ AF +
Sbjct: 1 MEKIKFENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
PA++ + + + +++LCPTRELA Q E L K G+ VL + GG
Sbjct: 61 PALDTIDLNNRN--------LQIMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ L+ QI++ TPGR++DHI K+ ++ +KM+VLDEAD +LD+GFR D+
Sbjct: 113 IDRQIKALKRG-VQIVIGTPGRVIDHINRKT---LKTDNIKMVVLDEADEMLDMGFRDDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKELV 580
E I+ +P RQ++LFSATMPK +V
Sbjct: 169 ETIIQSVPENRQTILFSATMPKAIV 193
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+SP T++A+ GY T +Q A + L G+D + A+TGTGK+ AF LP I+
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ + + L++ PTRELA Q+A+ K + L+GG F +
Sbjct: 64 LMNGRAKARMP-----RALVIAPTRELADQVASSFEKYAKGTK-LSWALLIGGVSFGDQE 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ +L+ATPGRLLDH E L + G++ LV+DEAD +LD+GF D+E I
Sbjct: 118 KKLDRG-VDVLIATPGRLLDHFERGKLL---MTGVQFLVVDEADRMLDMGFIPDIERIFK 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
P ++Q+L FSATMP E+
Sbjct: 174 MTPPKKQTLFFSATMPPEIT 193
>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis KF147]
gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
lactis subsp. lactis KF147]
Length = 547
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + LT GY Q T +QE T+ LEG+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + P I L++ PTRELA Q E K+ G+ V T+ GG+ +
Sbjct: 62 KIDASN--------PAIQALVIAPTRELAVQGQEELFRFGKSK-GLKVRTVFGGSSIEKQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGRL+D I+ K +++L L+ L+LDEAD +L++GF +D+ I+
Sbjct: 113 IKGLKAG-AHIVVGTPGRLVDLIKRK---AIKLDQLETLILDEADEMLNMGFLEDIHFII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSATMP ++
Sbjct: 169 EKTPEARQTLLFSATMPNDI 188
>gi|254573064|ref|XP_002493641.1| Putative nucleolar DEAD box RNA helicase [Komagataella pastoris
GS115]
gi|238033440|emb|CAY71462.1| Putative nucleolar DEAD box RNA helicase [Komagataella pastoris
GS115]
gi|328354532|emb|CCA40929.1| RNA Helicase [Komagataella pastoris CBS 7435]
Length = 766
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 121/198 (61%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E +S T+ L A +I+MT +Q+ + L+G+D + AKTG+GK++AFL+P IE
Sbjct: 43 KFSELPLSRQTLIGLRGAHFIEMTGIQKEAIPPALQGQDILGAAKTGSGKTLAFLIPLIE 102
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+L+ + + LI+ PTRELA QI E + + H ++GG FK +
Sbjct: 103 MLLREDWNE----FDGVGALIISPTRELAMQI-YEVLLNIGKHSSFSCGLVIGGKDFKYE 157
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ +L+ TPGRLL H++ + L++ L+ML+LDEAD +LD+GF+K +++I+
Sbjct: 158 SERI--GKINVLIGTPGRLLQHMDQSANLNIN--NLQMLILDEADRILDMGFKKTLDSII 213
Query: 560 DCLPRRRQSLLFSATMPK 577
+P +RQ+LLFSAT K
Sbjct: 214 SSIPPQRQTLLFSATQTK 231
>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
Length = 457
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 112/185 (60%), Gaps = 18/185 (9%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTTQLVP 454
GY++MT VQ A L A L GKD V+AKTG+GK+ AF LL I+A L T S
Sbjct: 22 GYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHIDASLFQTQS------- 74
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
L+LCPTRELA Q+A E L + +LTL GG F + L+ P I+VAT
Sbjct: 75 ----LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAP-HIIVAT 129
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574
PGRLLDH++ + V L L+ LV+DEAD +LD+GF ++ ++ P RRQ+LLFSAT
Sbjct: 130 PGRLLDHLQKGT---VSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPSRRQTLLFSAT 186
Query: 575 MPKEL 579
P+ +
Sbjct: 187 WPEAI 191
>gi|403070967|ref|ZP_10912299.1| ATP-dependent RNA helicase [Oceanobacillus sp. Ndiop]
Length = 492
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E +S +KAL G+ + T +Q T+ +EG D + +A+TGTGK+ AF +P I
Sbjct: 3 KFNELSVSAPIMKALEKMGFEEATPIQSETIPLAMEGNDVIGQAQTGTGKTAAFGIPMIN 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ I L++ PTRELA Q+A E + L G+ L++ GG+
Sbjct: 63 KIDPKLRK--------IQGLVVAPTRELAIQVAEE-LNRLAKFTGMRALSIYGGSPMDRQ 113
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ P QI+VATPGRLLDH+ K+ +R+ ++ VLDEAD +L++GF D+ +I+
Sbjct: 114 IRALKDGP-QIVVATPGRLLDHMRRKT---IRIDAVQTAVLDEADEMLNMGFIDDIRDIL 169
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMPKE+
Sbjct: 170 KGIPAERQTLLFSATMPKEI 189
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S ++A+T GY+ T +Q A + A L G+D + A+TGTGK+ F LP IE
Sbjct: 3 FSALGLSEEIVRAVTERGYLTPTPIQVAAIPAVLSGRDLMAGAQTGTGKTAGFTLPIIEI 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + P+ LIL PTRELA+Q+ E++ H + + GG
Sbjct: 63 LSRKNDKKEKGRRVPVKALILTPTRELAAQV-EESVVEYGKHMKLSSTVIFGGVSINPQI 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L + ILVATPGRLLDH++ + ++ L +++LVLDEAD +LD+GF +D+ I+
Sbjct: 122 QKLRTG-VDILVATPGRLLDHVQQR---TLDLSHVEILVLDEADRMLDMGFIRDIRKIIS 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ RQ+LLFSAT E+
Sbjct: 178 LLPKTRQNLLFSATFSDEI 196
>gi|244539109|dbj|BAH83152.1| ATP-dependent RNA helicase [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 562
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 133/237 (56%), Gaps = 23/237 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G++ + AL GY + + +Q A + LEG D + A+TG+GK+ AF LP +
Sbjct: 8 FADFGLNKNILSALKDMGYEKPSPIQLACIPYLLEGNDVLGMAQTGSGKTAAFFLPLLNN 67
Query: 441 V-LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ LK S +L+L PTRELA Q+ K+ G+ VL L GG R+ +
Sbjct: 68 IDLKLESPQ---------ILVLAPTRELAVQVTGACNDFAKHMRGVNVLALYGGQRYDIQ 118
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L P QI+V TPGRLLDH+ K G ++ L L+ LVLDEAD +L +GF +DVE I+
Sbjct: 119 LKGLRQGP-QIVVGTPGRLLDHL--KRG-TLNLSQLRCLVLDEADEMLRMGFIEDVETIM 174
Query: 560 DCLPRRRQSLLFSATMPKEL------VLKREHTYIDTVGLGSVETPVKVSKYNIYVF 610
+P +RQ++LFSATMP+E+ +K H D ++ T +S+Y Y +
Sbjct: 175 SNIPSKRQTVLFSATMPEEIRRITRRFMKEPH---DIRIQSNITTRPNISQYYWYAY 228
>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 607
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 118/210 (56%), Gaps = 13/210 (6%)
Query: 370 REEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGK 429
+E P+ + FDE G+ ++A+ G+ T +Q A + A L G+D A+TGTGK
Sbjct: 18 QETAPVPTGPGFDELGLPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGK 77
Query: 430 SIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
+ AF LP + A+ P + L+LCPTRELA Q+A + + V+
Sbjct: 78 TAAFGLPLLAAI---------DPTPGVQALVLCPTRELAVQVADAISSFATALPDVSVIA 128
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549
+ GGT F + QR Q++V TPGR++DH+E + + L GL+ LVLDEAD +L +
Sbjct: 129 IYGGTGF-LPQRAALRAGAQVVVGTPGRIIDHLERGT---LDLSGLRFLVLDEADEMLRM 184
Query: 550 GFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
GF +DV+ I+ P RQ+ LFSATMP +
Sbjct: 185 GFAEDVDRILSDAPNSRQAALFSATMPPAI 214
>gi|215482158|ref|YP_002324340.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB307-0294]
gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
gi|403674395|ref|ZP_10936653.1| DEAD/DEAH box helicase [Acinetobacter sp. NCTC 10304]
gi|421621590|ref|ZP_16062506.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC074]
gi|421624521|ref|ZP_16065389.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC098]
gi|421641753|ref|ZP_16082284.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-235]
gi|421647827|ref|ZP_16088238.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-251]
gi|421649960|ref|ZP_16090342.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC0162]
gi|421654460|ref|ZP_16094787.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-72]
gi|421659596|ref|ZP_16099812.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-83]
gi|421661248|ref|ZP_16101425.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC110]
gi|421673855|ref|ZP_16113792.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC065]
gi|421695693|ref|ZP_16135298.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-692]
gi|421698540|ref|ZP_16138082.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-58]
gi|421796556|ref|ZP_16232616.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-21]
gi|421800253|ref|ZP_16236232.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC1]
gi|421804005|ref|ZP_16239917.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-694]
gi|445489836|ref|ZP_21458844.1| DEAD/DEAH box helicase [Acinetobacter baumannii AA-014]
gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
[Acinetobacter baumannii AB307-0294]
gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
gi|404565211|gb|EKA70381.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-692]
gi|404572840|gb|EKA77882.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-58]
gi|408510231|gb|EKK11893.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-72]
gi|408512359|gb|EKK14004.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC0162]
gi|408514505|gb|EKK16111.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-235]
gi|408516021|gb|EKK17600.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-251]
gi|408697499|gb|EKL43011.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC074]
gi|408701178|gb|EKL46617.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC098]
gi|408706929|gb|EKL52223.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-83]
gi|408716097|gb|EKL61218.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC110]
gi|410386073|gb|EKP38557.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC065]
gi|410398805|gb|EKP51011.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-21]
gi|410408461|gb|EKP60429.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC1]
gi|410412471|gb|EKP64330.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-694]
gi|444766278|gb|ELW90553.1| DEAD/DEAH box helicase [Acinetobacter baumannii AA-014]
Length = 586
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 628
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 14/197 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E G+S +K++ GY T +Q AT+ LEG+D + +A+TGTGK+ AF LP +
Sbjct: 7 FNELGLSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSM 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVD 499
+ Q P VL+L PTRELA Q+A EA +H G VL + GG + +
Sbjct: 67 I------DIDQRDP--QVLVLAPTRELAIQVA-EAFQQYAHHIKGFHVLPIYGGQSYDIQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L+ ++V TPGR++DHI K+ + L GLK LVLDEAD +L +GF DV+ ++
Sbjct: 118 LRQLKRG-AHVVVGTPGRVMDHIRRKT---LNLSGLKTLVLDEADEMLRMGFIDDVKWVL 173
Query: 560 DCLPRRRQSLLFSATMP 576
+ LP +RQ LFSATMP
Sbjct: 174 EQLPEQRQIALFSATMP 190
>gi|198429555|ref|XP_002122319.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
isoform 1 [Ciona intestinalis]
Length = 627
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 125/197 (63%), Gaps = 12/197 (6%)
Query: 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444
G+S LT+KA+ G+ M +Q ++ LEG+D + AKTG+GK++AFL+PAIE + K
Sbjct: 148 GVSDLTLKAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAFLIPAIELMYK- 206
Query: 445 TSSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
+ +P V+++ PTRELA QI LLK+H L ++GG+ + ++
Sbjct: 207 -----LRFMPRNGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGL-IMGGSNRSSEAKK 260
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L + I+VATPGRLLDH++N R L+ L++DEAD +L++GF ++++ IV L
Sbjct: 261 L-GNGINIIVATPGRLLDHLQNTQEFMFR--NLQCLIIDEADRILEVGFEEEMKQIVRLL 317
Query: 563 PRRRQSLLFSATMPKEL 579
P+RRQ++LFSAT K++
Sbjct: 318 PKRRQTMLFSATQTKKI 334
>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|31340034|sp|Q89AF9.1|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 602
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G++ I AL GY+Q + +Q A + ++GKD + A+TG+GK+ AF LP +
Sbjct: 8 FSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHN 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ VP I L+L PTRELA Q+A K G+ VL L GG R+ +
Sbjct: 68 I------KLDVRVPQI--LVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQL 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L P QI+V TPGRLLDH++ ++ + L L LVLDEAD +L +GF +DVE I+
Sbjct: 120 KSLRKGP-QIIVGTPGRLLDHLKRRT---LSLSNLHSLVLDEADEMLRMGFIEDVETIMT 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P R Q+ LFSATMP+ +
Sbjct: 176 EIPDRHQTALFSATMPEAI 194
>gi|345859080|ref|ZP_08811447.1| DEAD-box ATP-dependent RNA helicase cshA [Desulfosporosinus sp. OT]
gi|344327834|gb|EGW39245.1| DEAD-box ATP-dependent RNA helicase cshA [Desulfosporosinus sp. OT]
Length = 492
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 121/199 (60%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S I+++ G+ + T +QE T+ LEGKD + +A+TGTGK+ A+ +P +E
Sbjct: 4 FTDLGLSEPIIRSIINMGFEETTPIQEKTIPTALEGKDLIGQAQTGTGKTAAYGIPLVER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L I ++L PTRELA Q+A E + + I L + GG
Sbjct: 64 ILPQAEQ--------IQGIVLAPTRELAVQVAEE-LNKIGQFKRIHALPIYGGQGIDWQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L P I+VATPGRL+DH+ ++ +RL +K++VLDEAD +L++GF +D+E I+
Sbjct: 115 RALRKRP-HIIVATPGRLMDHMRRRT---IRLNDIKIVVLDEADEMLNMGFLEDIETILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMP+++
Sbjct: 171 EIPEERQTLLFSATMPRQI 189
>gi|354481236|ref|XP_003502808.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Cricetulus
griseus]
gi|344243626|gb|EGV99729.1| putative ATP-dependent RNA helicase DDX10 [Cricetulus griseus]
Length = 877
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLIPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 241 ENLPKKRQTLLFSATQTK 258
>gi|424058531|ref|ZP_17796028.1| hypothetical protein W9K_02859 [Acinetobacter baumannii Ab33333]
gi|404665773|gb|EKB33735.1| hypothetical protein W9K_02859 [Acinetobacter baumannii Ab33333]
Length = 586
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|76675332|ref|XP_597469.2| PREDICTED: ATP-dependent RNA helicase DDX18 isoform 1 [Bos taurus]
gi|297471793|ref|XP_002685472.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Bos taurus]
gi|296490513|tpg|DAA32626.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus]
Length = 671
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 191 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 244
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 245 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 302
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 303 INIVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 360
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 361 TMLFSATQTRKVEDLARISLKKEPLYV 387
>gi|119890683|ref|XP_001249975.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Bos taurus]
gi|297473570|ref|XP_002686695.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Bos taurus]
gi|296488716|tpg|DAA30829.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos taurus]
Length = 671
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 191 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 244
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 245 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 302
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 303 INIVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 360
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 361 TMLFSATQTRKVEDLARISLKKEPLYV 387
>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
Length = 467
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+LP +
Sbjct: 8 FDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLTL 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ NH + V L+GG F+
Sbjct: 68 LEKGRARARMP-----RTLILEPTRELAAQVEENFDKYGINHR-LNVALLIGGVSFEHQD 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF D+E I
Sbjct: 122 RKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGFIPDIERICK 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 178 LTPFTRQTLFFSATMAPEI 196
>gi|356513888|ref|XP_003525640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine
max]
Length = 572
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 129/208 (62%), Gaps = 14/208 (6%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I+S + F+ G+S T KA+ G+ MT++Q + L GKD + A+TG+GK++AFL
Sbjct: 83 IMSTESFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFL 142
Query: 435 LPAIEAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLV 491
+PA+E + +K T + V+++CPTRELA Q A A LLK H +G+ ++
Sbjct: 143 IPALELLYNVKFTPRNGAG------VIVICPTRELAIQTHAVAKELLKYHSQTLGL--VI 194
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
GG+ K++ RL + +LV TPGRLLDH++N G + LK L++DEAD +L+ F
Sbjct: 195 GGSARKIEAERL-AKGINLLVGTPGRLLDHLQNTKGFMYK--NLKCLMIDEADRILEANF 251
Query: 552 RKDVENIVDCLPRRRQSLLFSATMPKEL 579
++++ I+ LP+ RQ+ LFSAT K++
Sbjct: 252 EEEMKQIIKILPKNRQTALFSATQTKKV 279
>gi|381197939|ref|ZP_09905278.1| ATP-dependent RNA helicase [Acinetobacter lwoffii WJ10621]
Length = 640
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 119/193 (61%), Gaps = 9/193 (4%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS----S 447
+AL + G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP + A+ +
Sbjct: 16 QALQSLGFTSPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAAQETFVPFK 75
Query: 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ + +L+LCPTRELA Q++ +AI +++ G + ++GG F ++L+
Sbjct: 76 ERMKAITQPNILVLCPTRELAQQVSQDAIGFVRHMKGARIAAIMGGMPFGKQIQQLKG-- 133
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D+E I D R+Q
Sbjct: 134 AQVVVATPGRLLDLVNRR---QIKLDQVDALIVDEADRMLDLGFSEDLEAISDLAANRKQ 190
Query: 568 SLLFSATMPKELV 580
+L+FSAT ++
Sbjct: 191 TLMFSATFAGRII 203
>gi|365156794|ref|ZP_09353090.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
gi|363626851|gb|EHL77816.1| hypothetical protein HMPREF1015_01991 [Bacillus smithii 7_3_47FAA]
Length = 473
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 123/200 (61%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+SP +K++ G+ + T +Q AT+ L+GKD + +A+TGTGK+ AF +P +E
Sbjct: 3 KFVELGLSPALLKSIDQLGFEEATPIQAATIPKSLDGKDLIGQAQTGTGKTAAFGIPLME 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ I +I+ PTRELA Q+ +E + + H + +L + GG +
Sbjct: 63 KIDTKNHH--------IQGMIIAPTRELAIQV-SEELYKIGYHKRVRILAVYGGQDIQRQ 113
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ P ++V TPGR+LDHI + +++L L LVLDEAD +L++GF +D+E I+
Sbjct: 114 IRALKKQP-HVIVGTPGRILDHINRQ---TLKLDHLHTLVLDEADEMLNMGFIQDIETIL 169
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+P+ RQ+LLFSATMP+ +
Sbjct: 170 SHMPKERQTLLFSATMPEPI 189
>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
51756]
gi|340782596|ref|YP_004749203.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus SM-1]
gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
51756]
gi|340556748|gb|AEK58502.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus SM-1]
Length = 429
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 8/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+ P A A GY Q T +Q + L+G D + A+TGTGK+ AF LP +
Sbjct: 20 FTELGLDPALCAAAVARGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHR 79
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + SS + P+ LIL PTRELA+Q+ + I L + + L L+GG +
Sbjct: 80 LARDPVSSGPR---PVRALILVPTRELAAQVE-DNIRLYRGQMPVRSLMLIGGVKIGPQM 135
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L + I+VATPGRLLDH++ +S +RL ++ LVLDEAD +LD+GF +D+ I+
Sbjct: 136 EQLRNG-ADIVVATPGRLLDHLQQRS---LRLDRVETLVLDEADRMLDMGFIRDIRRIIG 191
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT E+
Sbjct: 192 MLPAKRQNLLFSATFSPEI 210
>gi|116003979|ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus]
gi|115305270|gb|AAI23580.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
gi|296480316|tpg|DAA22431.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
Length = 876
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
Length = 465
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 115/196 (58%), Gaps = 12/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++P T+ L GY+ MT +Q A+L L G+D + +AKTG+GK+ AF L A+ A
Sbjct: 9 FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSL-ALLA 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L A S + +ILCPTRELA Q+A E L + + + VLTL GGT +
Sbjct: 68 RLDARSFD-------VQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQA 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ LE I+V TPGR++DH++ + ++L L LVLDEAD +LD+GF D+ +
Sbjct: 121 QSLEHG-AHIVVGTPGRIMDHLDRGN---LKLDALNTLVLDEADRMLDMGFFDDIAKVAR 176
Query: 561 CLPRRRQSLLFSATMP 576
P RQ+LLFSAT P
Sbjct: 177 MCPTTRQTLLFSATYP 192
>gi|427413381|ref|ZP_18903573.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716197|gb|EKU79183.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
Length = 523
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 121/198 (61%), Gaps = 13/198 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
++F+E IS ++AL G+ + T +Q+ + + G D + +A+TGTGK+ AF +PA+
Sbjct: 3 EKFEELQISEPILRALNDMGFEEPTPIQKEAIPVAMSGLDMIGQAQTGTGKTAAFGIPAL 62
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E V + + + VLIL PTRELA Q+A E + + H I L + GG +
Sbjct: 63 EQV--------DEHLRAVQVLILSPTRELAIQVAEE-LNKMAQHTHIQALPIYGGQDIQR 113
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
R L +P QI+VATPGRL+DH+E S + +K++VLDEAD +L++GF D+ I
Sbjct: 114 QFRSLRKNP-QIIVATPGRLMDHMERGS---INFDNVKVIVLDEADEMLNMGFIDDINKI 169
Query: 559 VDCLPRRRQSLLFSATMP 576
+ +P +RQ+LLFSATMP
Sbjct: 170 LAAVPEQRQTLLFSATMP 187
>gi|424062002|ref|ZP_17799489.1| hypothetical protein W9M_02203 [Acinetobacter baumannii Ab44444]
gi|404674414|gb|EKB42162.1| hypothetical protein W9M_02203 [Acinetobacter baumannii Ab44444]
Length = 586
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|417112849|ref|ZP_11964769.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2741]
gi|422781785|ref|ZP_16834570.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|386142459|gb|EIG83597.1| ATP-independent RNA helicase DbpA [Escherichia coli 1.2741]
Length = 457
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 116/197 (58%), Gaps = 18/197 (9%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVL 442
+ P + L GY+ MT VQ A L A L GKD V+AKTG+GK+ AF LL I+A L
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASL 69
Query: 443 KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
T + L+LCPTRELA Q+A E L + +LTL GG F + +
Sbjct: 70 FQTQA-----------LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L+ P I+VATPGRLLDH++ + V L L MLV+DEAD +LD+GF +++++
Sbjct: 119 LQHAP-HIIVATPGRLLDHLQKGT---VSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA 174
Query: 563 PRRRQSLLFSATMPKEL 579
P RQ+LLFSAT P+ +
Sbjct: 175 PASRQTLLFSATWPEAI 191
>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 491
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +Q + L G+D + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK +SST+ P+ L+L PTRELA Q+ A+ IAL + + + GG K
Sbjct: 65 LLKHENSSTSPARHPVRALVLLPTRELADQV-AQQIALYAKYTKLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 LELKKG-VEVLVATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ R +LLFSAT E+
Sbjct: 180 YLPKTRTTLLFSATFSPEI 198
>gi|394988697|ref|ZP_10381532.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
gi|393792076|dbj|GAB71171.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
Length = 445
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 117/199 (58%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+S ++A+T GY T +Q + A + G D + A+TGTGK+ F+LP +
Sbjct: 3 FASLGLSDEIVRAVTERGYTVPTPIQMQAIPAVMSGGDLLAGAQTGTGKTAGFVLPILHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + PPI LIL PTRELA+Q+ E++ H + +T++GG
Sbjct: 63 LSDPNVKGPSSGRPPIRALILIPTRELAAQV-EESVRDYGKHLKLNSMTMIGGVNINPQI 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L ILVATPGRLLDH++ K +V L +++LVLDEAD +LD+GF +D++ I+
Sbjct: 122 TKLRGR-VDILVATPGRLLDHVQQK---TVDLSHVEILVLDEADRMLDMGFIRDIKKILA 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ RQ+LLFSAT E+
Sbjct: 178 LLPKHRQNLLFSATFSDEI 196
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 121/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S ++A+T GY + T +Q + LEG+D + A+TGTGK+ F LP ++
Sbjct: 3 FENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLLQL 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ ++ST+ P+ LIL PTRELA+Q+ E++ + + + GG K
Sbjct: 63 LSIHANTSTSPAKHPVRALILTPTRELAAQV-EESVQTYGKYLPLKSTVVFGGVNIKEQI 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ +ILVATPGRLLDH+E K +V L +++LVLDEAD +LD+GF D++ I+
Sbjct: 122 AALKGG-VEILVATPGRLLDHVEQK---TVNLSKVEILVLDEADRMLDMGFLPDIKRIIA 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP +RQ+LLFSAT E+
Sbjct: 178 LLPAKRQNLLFSATFAGEI 196
>gi|451823243|ref|YP_007459517.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776043|gb|AGF47084.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 458
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 141/247 (57%), Gaps = 21/247 (8%)
Query: 358 NKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK 417
N +N +KE +++ S F + G++ + + + + G+ + T +QE ++ LEG+
Sbjct: 2 NNVNDFNLRKEIEKDDSTFS---FSDFGLNKILLDTIISIGHTKPTPIQEKSIPLILEGR 58
Query: 418 DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIA 477
D + A+TGTGK+ AF++P I +L + S++ + LIL PTRELASQ+ E+I
Sbjct: 59 DVIGAAQTGTGKTAAFVVPIINRLLPFANPSSSPARHLLRSLILVPTRELASQV-YESIK 117
Query: 478 LLKNHDGIGVLTLVGGTRF--KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGL 535
+ + + L L GGT + D+ RL S +ILVATPGRL+ H+E S+ +
Sbjct: 118 IYSKNTNLRSLVLFGGTDHNSQEDKLRLGS---EILVATPGRLIAHMEQG---SLHTQNI 171
Query: 536 KMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGS 595
+LVLDEAD +LD+GF DV+ IV+ LP+ +Q LLFSAT I +GL
Sbjct: 172 SILVLDEADRMLDMGFMPDVDKIVNALPKYKQILLFSATFSNS---------IRKIGLSY 222
Query: 596 VETPVKV 602
+ PV++
Sbjct: 223 LNNPVEI 229
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 21/202 (10%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E G+ P ++A+T G+ + T +Q + + G D + +A+TGTGK+ AF +P I
Sbjct: 2 KTFAEFGLEPKVLQAVTEMGFEESTPIQAKAIPIAMSGADLIGQAQTGTGKTAAFGIPLI 61
Query: 439 EAVLKATSSSTTQLVPP----IYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ PP I L++ PTRELA Q+A E + L + GI L + GG
Sbjct: 62 SKI------------PPEEERIVALVMTPTRELAIQVADE-LGKLARYKGIRTLPIYGGQ 108
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
R L+ P QI++ TPGRLLDHI K+ +RL ++ +VLDEAD +LD+GF +D
Sbjct: 109 DIGRQIRALKKKP-QIIIGTPGRLLDHINRKT---IRLDDVQTVVLDEADEMLDMGFMED 164
Query: 555 VENIVDCLPRRRQSLLFSATMP 576
+ I+ +P RQ++LFSATMP
Sbjct: 165 ITTILSLVPEERQTMLFSATMP 186
>gi|425748509|ref|ZP_18866496.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-348]
gi|425491390|gb|EKU57675.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-348]
Length = 586
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 63 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 178 LEAISDLAANRGQTLMFSATFADRII 203
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 122/199 (61%), Gaps = 7/199 (3%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G++ +KA+ GY+ T VQ+ + LEGKD + A+TGTGK+ +F LP ++
Sbjct: 3 FAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ A + Q + LIL PTRELA+Q+ E++ H +VGG +
Sbjct: 63 L--AENHDPHQKPRRVRALILVPTRELAAQVY-ESVKTYGAHLPFHAEAVVGGASIGIQT 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L C I+VATPGRL+DH++ ++ + L +++LVLDEAD +LD+GF D++ ++
Sbjct: 120 RQLRRG-CDIVVATPGRLIDHVQQRN---INLSNVEVLVLDEADRMLDMGFLPDIKQLMA 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P++RQSLLFSAT+P +
Sbjct: 176 LIPKKRQSLLFSATVPNAI 194
>gi|169632326|ref|YP_001706062.1| ATP-dependent RNA helicase [Acinetobacter baumannii SDF]
gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii]
Length = 619
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 7 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 67 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 127 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 181
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 182 LEAISDLAVNRGQTLMFSATFADRII 207
>gi|404491935|ref|YP_006716041.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544066|gb|ABA87628.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 435
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 9/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E + P +KALT GY T +Q + L G+D + A TGTGK+ AF+LPA++
Sbjct: 3 FSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPALQ- 61
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ T + P +L+L PTRELA Q+ +A + + G+ L+GG ++ DQ
Sbjct: 62 --RLTVKIARRKGAP-RMLVLAPTRELAGQVM-DAARVYGKYLGLTTAVLLGGVPYR-DQ 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R + P ++VATPGRLLDH++ +S + L L+MLVLDEAD +LD+GF++DV+ +
Sbjct: 117 FRALAKPLDLVVATPGRLLDHLQRRS---IDLSCLEMLVLDEADRMLDMGFKEDVDKVCA 173
Query: 561 CLPRRRQSLLFSATM 575
PR+RQ+++F+AT+
Sbjct: 174 AAPRQRQTMMFTATL 188
>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
E681]
gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
polymyxa E681]
Length = 529
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 119/199 (59%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E + P I+A+T G+ + T +Q ++ L+G+D + +A+TGTGK+ AF +P I
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ ++ I LI+ PTRELA Q+A E I L G+ L + GG
Sbjct: 64 ISRSDEK--------IRALIMAPTRELAIQVAEE-IEKLSRFKGLRTLPIYGGQDIVRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P QI++ TPGRLLDHI K+ ++L + +VLDEAD +LD+GF +D+++I+
Sbjct: 115 RALKKKP-QIIIGTPGRLLDHINRKT---IKLEDVNTVVLDEADEMLDMGFMEDIQSILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ++LFSATMP +
Sbjct: 171 QVPDERQTMLFSATMPANI 189
>gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 446
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 128/223 (57%), Gaps = 18/223 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S + A+T GY T +Q ++ L G++ + A+TGTGK+ +F+LP
Sbjct: 3 FSKLGLSNPIVTAVTEQGYTSPTPIQAKSIPVILSGRNLIAAAQTGTGKTASFVLP---- 58
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L+ S S TQ I LIL PTRELA Q+ A IAL H + + + GG K +
Sbjct: 59 ILQLLSQSQTQRKKRIRALILTPTRELAVQVEAN-IALYGKHLALTSMAMYGGVDAKPQR 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+RL D ILVATPGRLLD ++ + L +LVLDEAD +LD+GF +D++ I+D
Sbjct: 118 QRL-LDGVDILVATPGRLLDMYTQRA---IHFDELDILVLDEADRMLDMGFIEDIDKIMD 173
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVS 603
LP RQSLLFSAT+ + + + +++ PV++S
Sbjct: 174 KLPADRQSLLFSATLSHQ---------VKALAKTAIDKPVEIS 207
>gi|426244481|ref|XP_004016050.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Ovis aries]
Length = 878
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
Length = 460
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++P +KAL +GY T +Q + LEG D + A+TGTGK+ AF LP ++
Sbjct: 16 FASLNLAPELLKALDESGYTTPTPIQAQAIPVVLEGSDLMAGAQTGTGKTAAFTLPLLQK 75
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L SSS + P+ LIL PTRELA Q+ E++ H + L + GG K
Sbjct: 76 LLPLASSSASPARHPVRALILTPTRELAIQV-EESVKTYAKHTPLRSLVVFGGVDIKSQT 134
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +ILVATPGRLLDH+E + +V+L ++MLVLDEAD +LD+GF D++ I+
Sbjct: 135 PTLMKG-VEILVATPGRLLDHVEQR---TVQLGQVQMLVLDEADRMLDMGFMPDLKRILA 190
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++RQ+L+FSAT E+
Sbjct: 191 LLPKQRQNLMFSATFSPEI 209
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 117/199 (58%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY Q T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 117 FIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILER 176
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + +P I VLI+ PTRELA Q+ + I L I +VGG KV +
Sbjct: 177 LL-----FRPRRIPAIRVLIITPTRELAVQLHS-MIEKLAQFTDIRCCLVVGGLSSKVQE 230
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + P I+VATPGR++DH+ N SV L L +LVLDEAD LL+LGFR+++ +V
Sbjct: 231 VALRTHP-DIVVATPGRMIDHLRNTQ--SVGLEELAILVLDEADRLLELGFREEIHELVK 287
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RRQ++LFSATM E+
Sbjct: 288 LCPSRRQTMLFSATMTDEV 306
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 117/196 (59%), Gaps = 13/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E + P I+A+T G+ + T +Q ++ L+GKD + +A+TGTGK+ AF +P I
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPLISK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + I LI+ PTRELA Q+A E I L G+ L + GG
Sbjct: 64 IARNDEK--------IRALIMAPTRELAIQVAEE-IEKLSRFKGLRTLPIYGGQDIVRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P QI++ TPGRLLDHI K+ ++L + +VLDEAD +LD+GF +D+++I+
Sbjct: 115 RALKKKP-QIIIGTPGRLLDHINRKT---IKLEDVNTVVLDEADEMLDMGFMEDIQSILK 170
Query: 561 CLPRRRQSLLFSATMP 576
+P RQ++LFSATMP
Sbjct: 171 QVPDERQTMLFSATMP 186
>gi|354723738|ref|ZP_09037953.1| ATP-dependent RNA helicase DbpA [Enterobacter mori LMG 25706]
Length = 457
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 118/203 (58%), Gaps = 19/203 (9%)
Query: 381 FDECGISPLT-IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLP 436
F + P T + L GY+ MT VQ A L A LEG+D V+AKTG+GK+ AF LL
Sbjct: 4 FSTLNVLPATQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQ 63
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
I+A L T S LILCPTRELA Q+A E L + +LTL GG F
Sbjct: 64 HIDAALFQTQS-----------LILCPTRELADQVAGELRRLARFLPNTKILTLCGGQPF 112
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
+ L+ P I+VATPGRLLDH++ + V L L+ LV+DEAD +LD+GF ++
Sbjct: 113 GAQRDSLQHAP-HIIVATPGRLLDHLQKGT---VSLDALQTLVMDEADRMLDMGFSDAID 168
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
++ P+ RQ+LLFSAT P+ +
Sbjct: 169 EVIRFAPQDRQTLLFSATWPEAI 191
>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 496
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 13/206 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GIS I+ L T +QE + A ++GKD + +A+TGTGK++AF+LP IE
Sbjct: 4 FKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIEN 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
S I LI+ PTRELA QI E L+++ +GI VL + GG +
Sbjct: 64 FDFNQQS--------IQALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQL 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L + I+V TPGR+LDHI ++ L L LVLDEAD +L +GF K+VE I+
Sbjct: 116 NKLRKN-VGIVVGTPGRILDHIGRG---TIDLSELNSLVLDEADQMLHIGFLKEVEMIIR 171
Query: 561 CLPRRRQSLLFSATMPKEL-VLKREH 585
P+ RQ+LLFSAT+P E+ L ++H
Sbjct: 172 ETPKTRQTLLFSATIPDEIKTLAKKH 197
>gi|374672427|dbj|BAL50318.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis IO-1]
Length = 547
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + LT GY Q T +QE T+ LEG+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + P I L++ PTRELA Q E K+ G+ V T+ GG+ +
Sbjct: 62 KIDASN--------PAIQALVIAPTRELAVQGQEELFRFGKSK-GLKVRTVFGGSSIEKQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGRL+D I+ K +++L L+ L+LDEAD +L++GF +D+ I+
Sbjct: 113 IKGLKAG-AHIVVGTPGRLVDLIKRK---AIKLDQLETLILDEADEMLNMGFLEDIHFII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSATMP ++
Sbjct: 169 EKTPEARQTLLFSATMPADI 188
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 187 FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 246
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+Q+ + I L I +VGG KV +
Sbjct: 247 LL-----FRPKRVPAIRVLILTPTRELAAQVHS-MIEKLAQFTDIRCCLIVGGLSTKVQE 300
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +++LDEAD LL+LGF +++ ++
Sbjct: 301 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAVVILDEADRLLELGFSAEIQELIR 357
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+RRQ++LFSATM +E+
Sbjct: 358 MCPKRRQTMLFSATMTEEI 376
>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 472
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 115/195 (58%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ + PL +KA+ AGY T +QE + L G D + A+TGTGK+ AF+LPA+
Sbjct: 3 FESLNLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPALHR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ A+ S P VL+L PTRELA Q++ K V++++GG + + Q
Sbjct: 63 L--ASPSQVRSRGP--RVLVLTPTRELALQVSEATAKYGKYLPRAKVVSILGGMPYPL-Q 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L S ILVATPGRL+DHI+ + L+MLVLDEAD +LD+GF +DVE I
Sbjct: 118 NKLLSQVVDILVATPGRLIDHIQRG---RIDFSRLEMLVLDEADRMLDMGFIEDVERIAS 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ+LLFSAT+
Sbjct: 175 ATPATRQTLLFSATL 189
>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|385829922|ref|YP_005867735.1| DEAD/DEAH box helicase [Lactococcus lactis subsp. lactis CV56]
gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
Il1403]
gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
subsp. lactis CV56]
Length = 547
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + LT GY Q T +QE T+ LEG+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + P I L++ PTRELA Q E K+ G+ V T+ GG+ +
Sbjct: 62 KIDASN--------PAIQALVIAPTRELAVQGQEELFRFGKSK-GLKVRTVFGGSSIEKQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGRL+D I+ K +++L L+ L+LDEAD +L++GF +D+ I+
Sbjct: 113 IKGLKAG-AHIVVGTPGRLVDLIKRK---AIKLDQLETLILDEADEMLNMGFLEDIHFII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSATMP ++
Sbjct: 169 EKTPEARQTLLFSATMPNDI 188
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 164 FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 223
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+Q+ + I L I +VGG KV +
Sbjct: 224 LL-----FRPKRVPAIRVLILTPTRELAAQVHS-MIEKLAQFTDIRCCLIVGGLSTKVQE 277
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +++LDEAD LL+LGF +++ ++
Sbjct: 278 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAVVILDEADRLLELGFSAEIQELIR 334
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+RRQ++LFSATM +E+
Sbjct: 335 MCPKRRQTMLFSATMTEEI 353
>gi|423119970|ref|ZP_17107654.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5246]
gi|376397332|gb|EHT09966.1| ATP-independent RNA helicase dbpA [Klebsiella oxytoca 10-5246]
Length = 457
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 112/185 (60%), Gaps = 18/185 (9%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTTQLVP 454
GY+ MT VQ A L A L GKD V+AKTG+GK+ AF LL ++A L T S
Sbjct: 22 GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHVDATLFQTQS------- 74
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
L+LCPTRELA Q+A E L + I +LTL GG F + L+ P I+VAT
Sbjct: 75 ----LVLCPTRELADQVAGELRRLARFLPNIKILTLCGGQPFGAQRDSLQHAP-HIIVAT 129
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574
PGRLLDH++ + V L L+ LV+DEAD +LD+GF + ++ ++ P RQ+LLFSAT
Sbjct: 130 PGRLLDHLQKGT---VSLDALQTLVMDEADRMLDMGFSEAIDEVIRFAPAERQTLLFSAT 186
Query: 575 MPKEL 579
P+ +
Sbjct: 187 WPEAI 191
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 169 FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 228
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+QI + + L I +VGG K+ +
Sbjct: 229 LL-----FRPKRVPAIRVLILTPTRELAAQIHS-MVEKLAQFTDIRCCLIVGGLSTKIQE 282
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +++LDEAD LL+LGF +++ ++
Sbjct: 283 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAVVILDEADRLLELGFSAEIQELIR 339
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+RRQ++LFSATM +E+
Sbjct: 340 MCPKRRQTMLFSATMTEEI 358
>gi|300021887|ref|YP_003754498.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
gi|299523708|gb|ADJ22177.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 652
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 12/211 (5%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P +AL+A GY T VQ A L A G+D +V A+TG+GK++AF L A+ + L
Sbjct: 6 VHPALGRALSARGYSAPTAVQLAVLEANTVGRDLLVSAQTGSGKTVAFGL-AMASTLLGE 64
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
+ +Q P+ LI+ PTRELA Q+ E + L G V+T VGG + + R+L
Sbjct: 65 AERLSQAAEPL-ALIIAPTRELAMQVQRE-LDWLYADTGARVVTCVGGMDARAEARQLGF 122
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
I+V TPGRL DH+E + + L L +VLDEAD +LDLGFR+D+E I+D P
Sbjct: 123 G-AHIVVGTPGRLRDHLERRR---LDLTKLAAVVLDEADEMLDLGFREDLEFILDATPEG 178
Query: 566 RQSLLFSATMPKELV-----LKREHTYIDTV 591
RQ+LLFSATMP+E+ +R+ I+TV
Sbjct: 179 RQTLLFSATMPREIEALARRYQRDAVRIETV 209
>gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Acinetobacter calcoaceticus RUH2202]
gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
[Acinetobacter calcoaceticus RUH2202]
Length = 640
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 123/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE + A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 3 KSFAEFSLHETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
A+ S + V +L++ PTRELA Q++ +AIAL+++ G+ + ++GG
Sbjct: 63 NALAGQESVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGM 122
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 123 PFAKQIQQLKG--AQVVVATPGRLLDLVNRR---QIKLDQVDALIVDEADRMLDLGFSED 177
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I + R+Q+L+FSAT ++
Sbjct: 178 LEAISELAANRKQTLMFSATFADRII 203
>gi|395764614|ref|ZP_10445238.1| hypothetical protein MCO_00114 [Bartonella sp. DB5-6]
gi|395414151|gb|EJF80600.1| hypothetical protein MCO_00114 [Bartonella sp. DB5-6]
Length = 467
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+LP +
Sbjct: 8 FDDLGLSAKVIKAVKSAGYTVPTPIQSGTIPHVLQRKDVLGIAQTGTGKTASFVLPMLTL 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ NH + V L+GG F+
Sbjct: 68 LEKGRARARMP-----RTLILEPTRELAAQVEENFDKYGINHR-LNVALLIGGVSFEQQD 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF D+E I
Sbjct: 122 RKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGFIPDIERICK 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 178 LTPFTRQTLFFSATMAPEI 196
>gi|383642081|ref|ZP_09954487.1| DEAD/DEAH box helicase-like protein [Sphingomonas elodea ATCC
31461]
Length = 499
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 136/232 (58%), Gaps = 11/232 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S + AL+A GY + T +Q ++ A LEG+D + A+TGTGK+ AF+LP+I+
Sbjct: 3 FKDLGLSETVLAALSAKGYNEATPIQAQSIPALLEGRDLLGIAQTGTGKTAAFMLPSIDR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ + + + +L+L PTRELA+QIA A + G+ + T+ GGT ++
Sbjct: 63 LVASGKRAQPR---GCRMLVLAPTRELAAQIADNA-KHYASGTGLRIATVFGGTSVHKNK 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L ILVATPGRL+D ++ + L+G+++LVLDEAD +LDLGF + IV
Sbjct: 119 TDLARG-VDILVATPGRLVDLLDQ---CYMILLGIEILVLDEADQMLDLGFIHALRRIVK 174
Query: 561 CLPRRRQSLLFSATMPK---ELVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
LP +RQSL FSATMPK EL + H ++ T +V ++ YV
Sbjct: 175 ELPAKRQSLFFSATMPKTIRELASQFIHNPVEVKVTPVATTAERVEQFVTYV 226
>gi|334314831|ref|YP_004547450.1| DEAD/DEAH box helicase [Sinorhizobium meliloti AK83]
gi|407719270|ref|YP_006838932.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
gi|334093825|gb|AEG51836.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
gi|407317502|emb|CCM66106.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
Length = 630
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 7/211 (3%)
Query: 384 CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443
GI+P +AL GY +T VQ+A L L DA+V A+TG+GK++AF L A+ L
Sbjct: 5 AGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGL-ALAPTLI 63
Query: 444 ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
++ Q P+ L++ PTRELA Q+ E + L G + + VGG + ++R L
Sbjct: 64 GSARKFAQAGAPL-ALVIAPTRELALQVMRE-LDWLYEMAGATIASCVGGMDMRSERRTL 121
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
E I+V TPGRL DHI S + + GLK +VLDEAD +LDLGFR+D+E I++ P
Sbjct: 122 ERG-AHIVVGTPGRLCDHIRRGS---LDISGLKAVVLDEADEMLDLGFREDLEFILEASP 177
Query: 564 RRRQSLLFSATMPKELVLKREHTYIDTVGLG 594
R++L+FSAT+P+ + ++ D V +G
Sbjct: 178 ADRRTLMFSATVPRSIATLAKNYQRDAVRIG 208
>gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 640
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 119/193 (61%), Gaps = 9/193 (4%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATS----S 447
+AL + G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP + A+ +
Sbjct: 16 QALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAAQETFVPFK 75
Query: 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ + +L+LCPTRELA Q++ +AI +++ G + ++GG F ++L+
Sbjct: 76 ERMKAITQPNILVLCPTRELAQQVSQDAIGFVRHMKGARIAAIMGGMPFGKQIQQLKG-- 133
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D+E I D R+Q
Sbjct: 134 AQVVVATPGRLLDLVNRR---QIKLDQVDALIVDEADRMLDLGFSEDLEAISDLAANRKQ 190
Query: 568 SLLFSATMPKELV 580
+L+FSAT ++
Sbjct: 191 TLMFSATFAGRII 203
>gi|425066915|ref|ZP_18470031.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW6]
gi|425073652|ref|ZP_18476758.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW4]
gi|404594923|gb|EKA95478.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW4]
gi|404601586|gb|EKB01978.1| ATP-independent RNA helicase dbpA [Proteus mirabilis WGLW6]
Length = 457
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 18/189 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTT 450
L GY+ MT VQEA+L A L GKD +AKTG+GK+ AF LL I+A T S
Sbjct: 18 LNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKQFNTQS--- 74
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
L+LCPTRELA Q+A E L + I +LTL GG F + QR I
Sbjct: 75 --------LVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSI-QRDSLIHAAHI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRLLDH+ ++ V L +K LVLDEAD +LD+GF D+ +I+ + +RQ+LL
Sbjct: 126 IVATPGRLLDHLNKQT---VTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQRQTLL 182
Query: 571 FSATMPKEL 579
FSAT P E+
Sbjct: 183 FSATWPDEI 191
>gi|260948130|ref|XP_002618362.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
gi|238848234|gb|EEQ37698.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
Length = 560
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 125/202 (61%), Gaps = 23/202 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E G S T+KA+ G+ +MT+VQ T+ L G+D + AKTG+GK++AFLLPAIE
Sbjct: 98 FEEAGFSEPTLKAIRQMGFKKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAIEL 157
Query: 441 V--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFK 497
+ LK + T V+I+ PTRELA QI A L+++H G+ ++GG
Sbjct: 158 LYSLKFKPRNGTG------VVIISPTRELALQIFGVARELMEHHTQTFGI--VIGGA--- 206
Query: 498 VDQRRLESDP----CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
RR E+D +L+ATPGRLLDH++N G + LK LV+DEAD +L++GF +
Sbjct: 207 --NRRQEADKLVKGVNLLIATPGRLLDHLQNTQGFVFK--NLKALVIDEADRILEIGFEE 262
Query: 554 DVENIVDCLPRR-RQSLLFSAT 574
+++ I+ LP RQS+LFSAT
Sbjct: 263 EMKQIIKILPNEDRQSMLFSAT 284
>gi|418400246|ref|ZP_12973788.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
gi|359505715|gb|EHK78235.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
Length = 630
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 7/211 (3%)
Query: 384 CGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLK 443
GI+P +AL GY +T VQ+A L L DA+V A+TG+GK++AF L A+ L
Sbjct: 5 AGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGL-ALAPTLI 63
Query: 444 ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
++ Q P+ L++ PTRELA Q+ E + L G + + VGG + ++R L
Sbjct: 64 GSARKFAQAGAPL-ALVIAPTRELALQVMRE-LDWLYEMAGATIASCVGGMDMRSERRTL 121
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
E I+V TPGRL DHI S + + GLK +VLDEAD +LDLGFR+D+E I++ P
Sbjct: 122 ERG-AHIVVGTPGRLCDHIRRGS---LDISGLKAVVLDEADEMLDLGFREDLEFILEASP 177
Query: 564 RRRQSLLFSATMPKELVLKREHTYIDTVGLG 594
R++L+FSAT+P+ + ++ D V +G
Sbjct: 178 ADRRTLMFSATVPRSIATLAKNYQRDAVRIG 208
>gi|384133313|ref|YP_005515925.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
1656-2]
gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
1656-2]
Length = 561
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F E + +AL G+ T VQE ++ A LEGKD +V ++TG+GK+ AFLLP +
Sbjct: 7 KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66
Query: 439 EAVLKATS----SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+ + + V +L+LCPTRELA Q++ +AIA +++ G+ + ++GG
Sbjct: 67 HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
F ++L+ Q++VATPGRLLD + + ++L + L++DEAD +LDLGF +D
Sbjct: 127 PFGKQIQQLKG--AQVVVATPGRLLDLVNRR---QLKLDKVDALIVDEADRMLDLGFSED 181
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
+E I D R Q+L+FSAT ++
Sbjct: 182 LEAISDLAANRGQTLMFSATFADRII 207
>gi|418038567|ref|ZP_12676896.1| hypothetical protein LLCRE1631_01703 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354693215|gb|EHE92992.1| hypothetical protein LLCRE1631_01703 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 547
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S + LT GY Q T +QE T+ LEG+D + +A+TGTGK+ AF LP IE
Sbjct: 2 KFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTIE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + P I L++ PTRELA Q E K+ G+ V T+ GG+ +
Sbjct: 62 KIDASN--------PAIQALVIAPTRELAVQGQEELFRFGKSK-GLKVRTVFGGSSIEKQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGRL+D I+ K +++L L+ L+LDEAD +L++GF +D+ I+
Sbjct: 113 IKGLKAG-AHIVVGTPGRLVDLIKRK---AIKLDQLETLILDEADEMLNMGFLEDIHFII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSATMP ++
Sbjct: 169 EKTPEARQTLLFSATMPNDI 188
>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
Length = 457
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 18/189 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTT 450
L GY+ MT VQEA+L A L GKD +AKTG+GK+ AF LL I+A T S
Sbjct: 18 LNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKQFNTQS--- 74
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
L+LCPTRELA Q+A E L + I +LTL GG F + QR I
Sbjct: 75 --------LVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSI-QRDSLIHAAHI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRLLDH+ ++ V L +K LVLDEAD +LD+GF D+ +I+ + +RQ+LL
Sbjct: 126 IVATPGRLLDHLNKQT---VTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQRQTLL 182
Query: 571 FSATMPKEL 579
FSAT P E+
Sbjct: 183 FSATWPDEI 191
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 7/203 (3%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
SQ F G++ ++A+T AGY T +Q + +EG D + A+TGTGK+ F LP
Sbjct: 3 SQITFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLP 62
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ +L + P LIL PTRELA+Q+ E++ L H + + + GG
Sbjct: 63 ILHRLLNNPQQNRKPGRP--RALILAPTRELAAQVE-ESVRLYSQHTRLRSMVMFGGVNI 119
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
L P ILVATPGRLLDH+ ++ V L G+++LVLDEAD +LD+GF +D+
Sbjct: 120 NPQFHALRK-PLDILVATPGRLLDHVRQRT---VDLTGVEILVLDEADRMLDMGFIRDIR 175
Query: 557 NIVDCLPRRRQSLLFSATMPKEL 579
I+ +P RQ+LLFSAT E+
Sbjct: 176 KIISLMPVERQTLLFSATFSDEI 198
>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [Methanocella arvoryzae MRE50]
Length = 451
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 122/199 (61%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +S +KAL + G+ + T +Q++T+ L+GKD + +A TGTGK+ AF +P IE
Sbjct: 4 FENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPMIEI 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ P I +++ PTRELA Q++ E + + GI L + GG +K
Sbjct: 64 CDNS---------PSIQAIVITPTRELAIQVSEE-LNKIGQFKGIRALPIYGGQEYKWQM 113
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L+ P QI+VATPGRL+DH+ + S++ +KMLVLDEAD +LD+GF D+ +++
Sbjct: 114 KGLKEKP-QIIVATPGRLMDHLTKQK--SIKGNDVKMLVLDEADEMLDMGFIDDIYAVME 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSATM E+
Sbjct: 171 KLPAERQTLLFSATMSPEI 189
>gi|440287772|ref|YP_007340537.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
gi|440047294|gb|AGB78352.1| DNA/RNA helicase, superfamily II [Enterobacteriaceae bacterium
strain FGI 57]
Length = 457
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 111/185 (60%), Gaps = 18/185 (9%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTTQLVP 454
GY+ MT VQEA L A L GKD V+AKTG+GK+ AF LL I+A T S
Sbjct: 22 GYLSMTPVQEAALPAVLAGKDVRVQAKTGSGKTAAFGLGLLQHIDASRFQTQS------- 74
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
L+LCPTRELA Q+A E L + I VLTL GG F + L+ P I+VAT
Sbjct: 75 ----LVLCPTRELADQVAGEIRRLARYLPNIKVLTLCGGQPFGAQRDSLQHAP-HIIVAT 129
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574
PGRLLDH++ + V L L+ LV+DEAD +LD+GF ++ ++ P RQ+LLFSAT
Sbjct: 130 PGRLLDHLQKGT---VSLESLQTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSAT 186
Query: 575 MPKEL 579
P+ +
Sbjct: 187 WPEAI 191
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 121/199 (60%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 185 FLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 244
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+QI + L + D I +VGG K+ +
Sbjct: 245 LL-----FRPKRVPAIRVLILTPTRELAAQIHSMVEKLAQFTD-IRCCLIVGGLSTKIQE 298
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +++LDEAD LL+LGF +++ ++
Sbjct: 299 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAVVILDEADRLLELGFSAEIQELIR 355
Query: 561 CLPRRRQSLLFSATMPKEL 579
P+RRQ++LFSATM +E+
Sbjct: 356 MCPKRRQTMLFSATMTEEI 374
>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Fulvimarina pelagi HTCC2506]
gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Fulvimarina pelagi HTCC2506]
Length = 508
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+S + A+ A GY Q T +Q + LE +D + A+TGTGK+ +F+LP +
Sbjct: 4 FSELGLSAKVLAAVEATGYTQPTPIQAEAIPHALERRDVLGIAQTGTGKTASFVLPMLTM 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + +P LI+ PTRELA+Q+ E+ A + V L+GG F+
Sbjct: 64 LEKGRARAR---MP--RTLIIEPTRELAAQVE-ESFARYGKEQKLNVALLIGGMSFEEQD 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ C +L+ATPGRLLDH E L L G+++LV+DEAD +LD+GF D+E I
Sbjct: 118 KKLDRG-CDVLIATPGRLLDHFERGKLL---LTGVEILVIDEADRMLDMGFIPDIERICK 173
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+L FSATMP E+
Sbjct: 174 LLPFTRQTLFFSATMPPEI 192
>gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 484
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 117/208 (56%), Gaps = 18/208 (8%)
Query: 372 EEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSI 431
+ P S + F+E +SP + L GY+ MT +Q +L L G D + +AKTG+GK+
Sbjct: 22 QNPFPSARTFNELPLSPGLLSTLQQLGYLTMTPIQAESLPITLAGNDLIAQAKTGSGKTA 81
Query: 432 AFLLPAIEAVLKATSSSTTQLVP---PIYVLILCPTRELASQIAAEAIALLKNHDGIGVL 488
AF LP + T+L P I ++LCPTRELA Q+ E L ++ D I +L
Sbjct: 82 AFALPLL-----------TRLNPRRFAIQAMVLCPTRELADQVTQEIRRLARSEDNIKIL 130
Query: 489 TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD 548
TL GG+ + LE I+V TPGR++DH++ ++ L L LVLDEAD +LD
Sbjct: 131 TLCGGSTMRPQIASLEHG-AHIVVGTPGRIMDHLDRN---TLELSALNTLVLDEADRMLD 186
Query: 549 LGFRKDVENIVDCLPRRRQSLLFSATMP 576
+GF + +V P+ RQ+L+FSAT P
Sbjct: 187 MGFYDSLAYVVKHCPKDRQTLMFSATYP 214
>gi|291391442|ref|XP_002712440.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Oryctolagus
cuniculus]
Length = 665
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 185 TLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 238
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 239 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 296
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 297 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 354
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 355 TMLFSATQTRKVEDLARISLKKEPLYV 381
>gi|378824663|ref|YP_005187395.1| putative ATP-dependent RNA helicase protein [Sinorhizobium fredii
HH103]
gi|365177715|emb|CCE94570.1| putative ATP-dependent RNA helicase protein [Sinorhizobium fredii
HH103]
Length = 633
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Query: 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444
GI+P +AL GY +T VQ+A L LEG DA+V A+TG+GK++AF L A+ L
Sbjct: 6 GIAPSIAEALAKRGYNTLTPVQQAMLDPALEGADALVSAQTGSGKTVAFGL-ALGPTLLG 64
Query: 445 TSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLE 504
T+ P+ L++ PTRELA Q+ E + L G + + VGG + ++R LE
Sbjct: 65 TARQFDAPGAPL-ALVIAPTRELALQVKRE-LEWLYEMTGATIASCVGGMDIRSERRALE 122
Query: 505 SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPR 564
I+V TPGRL DHI S + + L+ +VLDEAD +LDLGFR+D+E I++ P
Sbjct: 123 RG-AHIVVGTPGRLCDHIRRDS---LDISALRAIVLDEADEMLDLGFREDLEFILEASPD 178
Query: 565 RRQSLLFSATMPKELVLKREHTYIDTVGLG 594
R++L+FSAT+P+ + ++ D V +G
Sbjct: 179 DRRTLMFSATVPRSIATLAKNYQRDAVRIG 208
>gi|227820653|ref|YP_002824623.1| DEAD/DEAH box helicase [Sinorhizobium fredii NGR234]
gi|227339652|gb|ACP23870.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
fredii NGR234]
Length = 633
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444
GI+P +AL GY +T VQ+A L LEG DA+V A+TG+GK++AF L +L
Sbjct: 6 GIAPAIAEALAKRGYNTLTPVQQAMLDPALEGADALVSAQTGSGKTVAFGLALGPTLLGP 65
Query: 445 TSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLE 504
+ P L++ PTRELA Q+ E + L G + + VGG + ++R LE
Sbjct: 66 ARQFDSPGAP--LALVIAPTRELALQVKRE-LEWLYEITGATIASCVGGMDIRSERRALE 122
Query: 505 SDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPR 564
I+V TPGRL DHI S + + L+ +VLDEAD +LDLGFR+D+E I++ P
Sbjct: 123 RG-AHIVVGTPGRLCDHIRRDS---LDISALRAIVLDEADEMLDLGFREDLEFILEASPT 178
Query: 565 RRQSLLFSATMPKELVLKREHTYIDTVGLG 594
R++L+FSAT+P+ + ++ D V +G
Sbjct: 179 ERRTLMFSATVPRSIATLAKNYQRDAVRIG 208
>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 489
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F ++ +A+ GY MT +Q + L G+D + A+TGTGK+ AF LP ++
Sbjct: 5 FSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK +SST+ P+ L+L PTRELA Q+ A+ IAL + + + GG K
Sbjct: 65 LLKHENSSTSPARHPVRALVLLPTRELADQV-AQQIALYAKYTKLRSTVVFGGMDMKPQT 123
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L+ ++LVATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+
Sbjct: 124 LELKKG-VEVLVATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILS 179
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ R +LLFSAT E+
Sbjct: 180 YLPKTRTTLLFSATFSPEI 198
>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
Length = 457
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 113/189 (59%), Gaps = 18/189 (9%)
Query: 394 LTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTT 450
L GY+ MT VQEA+L A L GKD +AKTG+GK+ AF LL I+A T S
Sbjct: 18 LNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKQFNTQS--- 74
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
L+LCPTRELA Q+A E L + I +LTL GG F + QR I
Sbjct: 75 --------LVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSI-QRDSLIHAAHI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRLLDH+ ++ V L +K LVLDEAD +LD+GF D+ +I+ + +RQ+LL
Sbjct: 126 IVATPGRLLDHLNKQT---VTLADVKTLVLDEADRMLDMGFFDDISDIISQMSAQRQTLL 182
Query: 571 FSATMPKEL 579
FSAT P E+
Sbjct: 183 FSATWPDEI 191
>gi|403234306|ref|ZP_10912892.1| ATP-dependent RNA helicase [Bacillus sp. 10403023]
Length = 433
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + GI L + G ++ T +QE T+ A L+GKD + KA+TGTGK++AF+LP +E
Sbjct: 4 FLQLGIRKEINHTLKSLGIVKPTPIQERTIPAVLKGKDVIAKAQTGTGKTLAFVLPILEK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ P + LIL PTRELA QI+ E +++N +GI VL + GG
Sbjct: 64 IDVHN--------PDVQALILTPTRELAQQISKEIKRMIENVEGINVLAVYGGQDVAHQL 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ I+VATPGRLLDH+ ++ L +K LV+DEAD +L +GF +V++I+
Sbjct: 116 KKLKG-AQHIVVATPGRLLDHVRRG---TIDLSSIKRLVIDEADQMLLMGFLPEVDDIIQ 171
Query: 561 CLPRRRQSLLFSATMPKEL 579
RQ++LFSATMP E+
Sbjct: 172 ETFPSRQTMLFSATMPTEI 190
>gi|392427583|ref|YP_006468577.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391357546|gb|AFM43245.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 488
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 122/199 (61%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S I+++ G+ + T +QE T+ L+G+D + +A+TGTGK+ A+ +P IE
Sbjct: 4 FTDLGLSETIIRSIVNMGFEETTPIQEMTIPIALQGRDLIGQAQTGTGKTAAYGIPLIER 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + I ++L PTRELA Q+A E + + GI L + GG
Sbjct: 64 FAEQSEQ--------IQGIVLAPTRELAVQVAEE-LNKIGQFKGIHSLPIYGGQNIDWQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L P I+VATPGRL+DH+ ++ +RL +K++VLDEAD +L++GF +D+E I+
Sbjct: 115 RALRKRP-HIIVATPGRLMDHMRRRT---IRLNEIKIVVLDEADEMLNMGFLEDIETILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ+LLFSATMPK++
Sbjct: 171 EIPEIRQTLLFSATMPKQI 189
>gi|373950432|ref|ZP_09610393.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323730|ref|YP_006019847.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817875|gb|AEG10541.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887032|gb|EHQ15924.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 433
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+ SP ++A++ GY QMT +Q+ + A G+D + A+TGTGK+ AF LP ++
Sbjct: 2 RFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+++ S + L VLIL PTRELA+Q+A A K + VLT+ GG + +
Sbjct: 62 KMVENPSET---LKSNARVLILTPTRELAAQVADNVTAYCK-YLNFSVLTIYGGVKIETQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L+ ++VATPGRLL+H+ + ++ L + LVLDEAD +LD+GF D++ I+
Sbjct: 118 AQKLKRG-ADVIVATPGRLLEHL---TACNLSLSNVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 560 DCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ ++RQ+LLFSAT P+ + + +++T DTV
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTV 219
>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
Length = 457
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 117/199 (58%), Gaps = 18/199 (9%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVL 442
+ P + L GY+ MT VQ ATL A L GKD V+AKTG+GK+ AF LL I+A L
Sbjct: 10 LPPAQLTNLNELGYLTMTPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASL 69
Query: 443 KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
T + L+LCPTRELA Q+A E L + +LTL GG F + +
Sbjct: 70 FQTQA-----------LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDS 118
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L+ P I+VATPGRLLDH++ + V L L LV+DEAD +LD+GF +++++
Sbjct: 119 LQHAP-HIIVATPGRLLDHLQKGT---VSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174
Query: 563 PRRRQSLLFSATMPKELVL 581
P RQ+LLFSAT P+ + +
Sbjct: 175 PASRQTLLFSATWPEAIAV 193
>gi|400599991|gb|EJP67682.1| ATP-dependent RNA helicase MSS116 [Beauveria bassiana ARSEF 2860]
Length = 656
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/266 (38%), Positives = 141/266 (53%), Gaps = 19/266 (7%)
Query: 361 NGNGEKKEKREEEPILSQKRFDECG----ISPLTIKALTA-AGYIQMTRVQEATLSACLE 415
+G K E L RF + + P I+ +T + M VQ ATL L
Sbjct: 142 GADGSYKPPLTEAVPLDTPRFADLAGQNLVHPQIIQTITEDLKFDHMMPVQAATLWELLP 201
Query: 416 GK--DAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAA 473
K D +V+AKTGTGK++AFLLPA++ +L T + I +L++ PTRELA QIA
Sbjct: 202 PKRSDCLVQAKTGTGKTVAFLLPALQTMLSKTRGAGADRDSAISLLVISPTRELAMQIAT 261
Query: 474 EAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLM 533
EA LL+ V +GGT ++R++ D C +L+ATPGRL+DH+ N+ + L
Sbjct: 262 EANNLLQRLPNYRVRVAIGGTNKDREERQI-LDGCDVLIATPGRLIDHMSNED-IIYALR 319
Query: 534 GLKMLVLDEADHLLDLGFRKDVENIVDCLPRR----RQSLLFSATMPKE------LVLKR 583
L LVLDEAD LLD+GF + IV LP R RQ +LFSAT+ LVL
Sbjct: 320 SLDTLVLDEADRLLDMGFMPALREIVGKLPDRKAHPRQGMLFSATIAPHVKQVAGLVLVP 379
Query: 584 EHTYIDTVGLGSVETPVKVSKYNIYV 609
+ +I T+ G T +V ++ I V
Sbjct: 380 GYKFISTIPEGEANTHERVPQHLIKV 405
>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
Length = 526
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 123/208 (59%), Gaps = 16/208 (7%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
EP+ RF++ G+ ++A+T G+ + T +Q + + G+D + +A+TGTGK+ +
Sbjct: 2 EPV----RFEDLGVDERILRAVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTAS 57
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
F +P ++ V + ++LCPTRELA Q A E L K GI VL + G
Sbjct: 58 FGIPMLQKVDPKNKH--------VQAIVLCPTRELAIQSADEIRKLAKFMHGIKVLPIYG 109
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G V Q R Q+L+ TPGR++DH+ + ++L LK++VLDEAD +L++GFR
Sbjct: 110 GQDI-VKQIRSLKTGVQVLIGTPGRVMDHMRRHT---IKLDDLKIVVLDEADEMLNMGFR 165
Query: 553 KDVENIVDCLPRRRQSLLFSATMPKELV 580
+D+E I+ P RQ+LLFSATMP+ ++
Sbjct: 166 EDIETILSQTPEERQTLLFSATMPQPIM 193
>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|378709548|ref|YP_005274442.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386342041|ref|YP_006038407.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|334864442|gb|AEH14913.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 433
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+ SP ++A++ GY QMT +Q+ + A G+D + A+TGTGK+ AF LP ++
Sbjct: 2 RFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+++ S + L VLIL PTRELA+Q+A A K + VLT+ GG + +
Sbjct: 62 KMVENPSET---LKSNARVLILTPTRELAAQVADNVTAYCK-YLNFSVLTIYGGVKIETQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L+ ++VATPGRLL+H+ + ++ L + LVLDEAD +LD+GF D++ I+
Sbjct: 118 AQKLKRG-ADVIVATPGRLLEHL---TACNLSLSNVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 560 DCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ ++RQ+LLFSAT P+ + + +++T DTV
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTV 219
>gi|440894340|gb|ELR46816.1| Putative ATP-dependent RNA helicase DDX10, partial [Bos grunniens
mutus]
Length = 773
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|433460289|ref|ZP_20417922.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
gi|432191745|gb|ELK48677.1| DEAD/DEAH box helicase [Halobacillus sp. BAB-2008]
Length = 470
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 115/182 (63%), Gaps = 14/182 (7%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIY 457
G+ + T +QE T+ LEGKD + +A+TGTGK+ AF +P +E + K V +
Sbjct: 2 GFEETTPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGIPMLEKINKQ--------VKAVQ 53
Query: 458 VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGR 517
L++ PTRELA Q+A E L K G+ VL + GG+ + R L+++ I+VATPGR
Sbjct: 54 GLVIAPTRELAIQVAEELNRLGKG-KGVRVLPIYGGSNMERQIRALKNN--HIVVATPGR 110
Query: 518 LLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPK 577
LLDHI K+ ++L + VLDEAD +L++GF D+ +I+ LP RQ+LLFSATMPK
Sbjct: 111 LLDHIRRKT---IKLESVHTAVLDEADEMLNMGFIDDIRDILKALPEERQTLLFSATMPK 167
Query: 578 EL 579
E+
Sbjct: 168 EI 169
>gi|418024095|ref|ZP_12663079.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|353536968|gb|EHC06526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 433
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+ SP ++A++ GY QMT +Q+ + A G+D + A+TGTGK+ AF LP ++
Sbjct: 2 RFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+++ S + L VLIL PTRELA+Q+A A K + VLT+ GG + +
Sbjct: 62 KMVENPSET---LKSNARVLILTPTRELAAQVADNVTAYCK-YLNFSVLTIYGGVKIETQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L+ ++VATPGRLL+H+ + ++ L + LVLDEAD +LD+GF D++ I+
Sbjct: 118 AQKLKRG-ADVIVATPGRLLEHL---TACNLSLSNVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 560 DCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ ++RQ+LLFSAT P+ + + +++T DTV
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTV 219
>gi|354807813|ref|ZP_09041268.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
gi|354513709|gb|EHE85701.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
Length = 523
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+S +KA+ AG+ + T +Q T+ L GKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFAELGLSEPIMKAIERAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ P I LI+ PTRELA Q E L ++ V + GG +
Sbjct: 62 NLDLDN--------PNIQALIISPTRELAIQTQEELYRLGRDRKA-KVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L+ P QILV TPGRLLDHI ++ V+L +K LVLDEAD +LD+GF D+E+I+
Sbjct: 113 IRSLKDHP-QILVGTPGRLLDHINRRT---VKLDHVKTLVLDEADEMLDMGFVDDIESII 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+P +RQ+LLFSAT+P ++
Sbjct: 169 KQVPDQRQTLLFSATLPAPIM 189
>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991428|gb|EEC57434.1| DEAD/DEAH box helicase [[Bacteroides] pectinophilus ATCC 43243]
Length = 559
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 123/204 (60%), Gaps = 18/204 (8%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E + +KA+ G+ + + +Q + LEGKD V +A+TGTGK+ A+ +P ++
Sbjct: 27 KFEELNVDEKILKAIGDMGFEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPMLQ 86
Query: 440 AV---LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
++ LK + ++LCPTRELA Q+A E L K I VL + GG
Sbjct: 87 SIDPKLKCVQA-----------VVLCPTRELAIQVADEIRKLAKYMSSIKVLPVYGGQEI 135
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
V Q + QI+V TPGR++DH+ K+ V+ +KM++LDEAD +LD+GFR+D+E
Sbjct: 136 -VRQIKSLKTGVQIVVGTPGRVMDHMRRKT---VKFDKVKMVILDEADEMLDMGFREDME 191
Query: 557 NIVDCLPRRRQSLLFSATMPKELV 580
I+ +P RQ+++FSATMPK ++
Sbjct: 192 TILTQMPEERQTVMFSATMPKAIM 215
>gi|198429557|ref|XP_002122407.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
isoform 2 [Ciona intestinalis]
Length = 575
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 125/197 (63%), Gaps = 12/197 (6%)
Query: 385 GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444
G+S LT+KA+ G+ M +Q ++ LEG+D + AKTG+GK++AFL+PAIE + K
Sbjct: 96 GVSDLTLKAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAFLIPAIELMYK- 154
Query: 445 TSSSTTQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRR 502
+ +P V+++ PTRELA QI LLK+H L ++GG+ + ++
Sbjct: 155 -----LRFMPRNGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGL-IMGGSNRSSEAKK 208
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCL 562
L + I+VATPGRLLDH++N R L+ L++DEAD +L++GF ++++ IV L
Sbjct: 209 L-GNGINIIVATPGRLLDHLQNTQEFMFR--NLQCLIIDEADRILEVGFEEEMKQIVRLL 265
Query: 563 PRRRQSLLFSATMPKEL 579
P+RRQ++LFSAT K++
Sbjct: 266 PKRRQTMLFSATQTKKI 282
>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
Length = 474
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 120/204 (58%), Gaps = 12/204 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ K F + +K L + GY +MT +Q +L L GKD + KAKTG+GK+ AF +
Sbjct: 12 MTPKAFSSLHLKIHMLKNLASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGI 71
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
+ + L ATSS + L+LCPTRELA Q+ E L + D I VLTL GG
Sbjct: 72 -GLLSHLDATSSR-------VQALVLCPTRELADQVGKELRRLARFTDNIKVLTLCGGVP 123
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
F LE I+V TPGR+LDH+ S + L L+ LVLDEAD +LD+GF+ ++
Sbjct: 124 FGPQLGSLEHG-AHIVVGTPGRILDHLRRGS---LDLTCLQTLVLDEADRMLDMGFQDEI 179
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
++D P+++Q+LLFSAT P+ +
Sbjct: 180 SALIDATPKKKQTLLFSATYPEAI 203
>gi|409051397|gb|EKM60873.1| hypothetical protein PHACADRAFT_110678 [Phanerochaete carnosa
HHB-10118-sp]
Length = 542
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 21/204 (10%)
Query: 378 QKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPA 437
+K F E +S TIKAL+ G+ MT +QE ++ L GKD + A+TG+GK++AFL+PA
Sbjct: 21 RKPFSELELSEPTIKALSGMGFTHMTAIQEKSIPPLLAGKDVLGAARTGSGKTLAFLIPA 80
Query: 438 IEAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
+E + +K + T +V I+ PTRELA QI A L+ +H + + G
Sbjct: 81 VELLHRMKFKPRNGTGIV------IVSPTRELALQIFGVAKELMAHHSQTFGIVMGGA-- 132
Query: 496 FKVDQRRLESDPCQ----ILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGF 551
RR E+D Q ++VATPGRLLDH+EN G R LK LV+DEAD +L++GF
Sbjct: 133 ----NRRAEADKLQKGVNLVVATPGRLLDHLENTKGFVFR--NLKCLVIDEADRILEVGF 186
Query: 552 RKDVENIVDCLP-RRRQSLLFSAT 574
++++ I+ LP RQS+LFSAT
Sbjct: 187 EEEMKKIIAILPNENRQSMLFSAT 210
>gi|410079745|ref|XP_003957453.1| hypothetical protein KAFR_0E01640 [Kazachstania africana CBS 2517]
gi|372464039|emb|CCF58318.1| hypothetical protein KAFR_0E01640 [Kazachstania africana CBS 2517]
Length = 760
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 129/228 (56%), Gaps = 10/228 (4%)
Query: 371 EEEPILSQ-KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGK 429
E +P LS+ K F + IS T+K L + +IQ+T +Q ++ L+G D + A+TG+GK
Sbjct: 32 EYDPSLSKAKFFKDLPISAQTLKGLNESAFIQLTGIQRDSIPVSLKGHDVLGAARTGSGK 91
Query: 430 SIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
++AFL+P +E + + ++ L LI+ PTRELA QI E + + H
Sbjct: 92 TLAFLIPVLEKLYREKWTAFDGL----GALIISPTRELAMQI-YEVLIKIGRHTSFSAGL 146
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549
++GG K + R+ IL+ TPGR+L H++ GLS L+MLVLDEAD LD+
Sbjct: 147 VIGGKDVKFESERISK--INILIGTPGRVLQHLDQAVGLSTS--NLQMLVLDEADRCLDM 202
Query: 550 GFRKDVENIVDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVE 597
GF+K ++ IV LP RQ+LLFSAT L + D +G++E
Sbjct: 203 GFKKTLDAIVSNLPASRQTLLFSATQSNSLADLARLSLTDYKSVGTLE 250
>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
Length = 439
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 8/195 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD + +KAL AAGY T +Q + ++G D A+TG+GK+ AFLLPA+
Sbjct: 3 FDALNLHSDLLKALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPALHH 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ T V P VLIL PTRELA QIA +A K + + + + GG + V Q
Sbjct: 63 CVANPRKPT---VGP-RVLILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQ 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L P +IL+ATPGRL+D+I K+ + L +++LVLDEAD +LD+GF + VE I
Sbjct: 119 RKLRR-PYEILIATPGRLIDYINQKA---INLSAIEILVLDEADRMLDMGFIEPVEKIAA 174
Query: 561 CLPRRRQSLLFSATM 575
P RQ+LLFSATM
Sbjct: 175 ATPSSRQTLLFSATM 189
>gi|395787552|ref|ZP_10467151.1| hypothetical protein ME7_00486 [Bartonella birtlesii LL-WM9]
gi|395411067|gb|EJF77602.1| hypothetical protein ME7_00486 [Bartonella birtlesii LL-WM9]
Length = 467
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD+ G+S IKA+ +AGY T +Q T+ L+ KD + A+TGTGK+ +F+LP +
Sbjct: 8 FDDLGLSAKVIKAVKSAGYTAPTPIQSGTIPHVLQKKDVLGIAQTGTGKTASFVLPML-- 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L T + ++ LIL PTRELA+Q+ NH + V L+GG F+
Sbjct: 66 TLLETGRARARMP---RTLILEPTRELAAQVEENFDKYGINHR-LNVALLIGGVSFEQQD 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E L LMG+++LV+DEAD +LD+GF D+E I
Sbjct: 122 RKLERG-ADVLIATPGRLLDHFERGKLL---LMGVEILVIDEADRMLDMGFIPDIERICK 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ+L FSATM E+
Sbjct: 178 LTPFTRQTLFFSATMAPEI 196
>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 592
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 12/206 (5%)
Query: 375 ILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFL 434
I+ F++ +S I+A G+ + T +Q + L+G D + +A TGTGK+ AF
Sbjct: 2 IIESILFNQLEVSEDIIRAAHDMGFEETTPIQGKAIPIILQGNDIIAQAPTGTGKTCAFG 61
Query: 435 LPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGT 494
+PAIE+V T++ Q VLILCPTREL Q E AL K GI L + GG
Sbjct: 62 IPAIESV--DTTNEKVQ------VLILCPTRELVIQTTEELSALAKYKRGIRTLPIYGGQ 113
Query: 495 RFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKD 554
+ L+ P QI+V TPGR++DH+ + ++L LKM++LDEAD +L++GFR+D
Sbjct: 114 QIDRQIIALKKRP-QIIVGTPGRIMDHLRRGT---LKLEHLKMIILDEADEMLNMGFRED 169
Query: 555 VENIVDCLPRRRQSLLFSATMPKELV 580
++ I++ +P RQ +LFSAT+ K ++
Sbjct: 170 IDVILESVPEERQFVLFSATLAKAIL 195
>gi|338737072|ref|YP_004674034.1| ATP-independent RNA helicase, DEAD/DEAH-box family protein
[Hyphomicrobium sp. MC1]
gi|337757635|emb|CCB63455.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
[Hyphomicrobium sp. MC1]
Length = 666
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 12/211 (5%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P +AL+A GY T VQ A L A G+D +V A+TG+GK++AF L A+ + L
Sbjct: 6 VHPALGRALSARGYSAPTAVQLAVLEANTVGRDLLVSAQTGSGKTVAFGL-AMASTLLGE 64
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
+ +Q P+ LI+ PTRELA Q+ E + L G V+T VGG + + R+L
Sbjct: 65 AERFSQAAEPL-ALIIAPTRELAMQVQRE-LDWLYADTGARVVTCVGGMDARAEARQLGF 122
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
I+V TPGRL DH+E + + L L +VLDEAD +LDLGFR+D+E I+D P
Sbjct: 123 G-AHIVVGTPGRLRDHLERRR---LDLTKLAAVVLDEADEMLDLGFREDLEFILDATPEG 178
Query: 566 RQSLLFSATMPKELV-----LKREHTYIDTV 591
RQ+LLFSATMP+E+ +R+ I+TV
Sbjct: 179 RQTLLFSATMPREIEALARRYQRDAVRIETV 209
>gi|377809005|ref|YP_005004226.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361055746|gb|AEV94550.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 518
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ GY + T +Q T+ L GKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFTELGLDDDVLKAVIDNGYEEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I +I+ PTRELA+Q AE L K + V + GG +
Sbjct: 62 HVDLNN--------PNIQAIIVSPTRELAAQTQAEIFKLGK-YKKAKVQVVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+S P QI+V TPGRLLDHI K+ +RL + LVLDEAD +LD+GF D+E I+
Sbjct: 113 INSLKSHP-QIVVGTPGRLLDHIGRKT---IRLDHVNTLVLDEADDMLDMGFLPDIEQII 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ P RQ+LLFSATMP+ +
Sbjct: 169 EKTPNDRQTLLFSATMPQAI 188
>gi|121700863|ref|XP_001268696.1| DEAD box RNA helicase HelA, putative [Aspergillus clavatus NRRL 1]
gi|119396839|gb|EAW07270.1| DEAD box RNA helicase HelA, putative [Aspergillus clavatus NRRL 1]
Length = 663
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 137/242 (56%), Gaps = 23/242 (9%)
Query: 386 ISPLTIKALTAAGYIQ-MTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKA 444
++P I+A+ IQ MT VQ T+ L+G D + +AKTGTGK++AFL P ++ ++K
Sbjct: 86 VNPRIIRAIVKDMKIQTMTDVQSQTIQEILQGDDVLAQAKTGTGKTLAFLTPVLQNIMKD 145
Query: 445 TS-------SSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
S S+ I LI+ PTRELA QIA EA L H + V T VGGT +
Sbjct: 146 PSIQQGGSRRSSHASASDIRALIISPTRELAEQIAKEA-RRLAAHTNVVVQTAVGGTHKR 204
Query: 498 VDQRRLESDPCQILVATPGRLLDHI-ENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
RR++ + C +LV TPGRL D + +++SG++ L LVLDEAD LLD GF +D+
Sbjct: 205 EGLRRIQREGCHLLVGTPGRLKDILSDHRSGVTA--PNLSTLVLDEADRLLDDGFSEDIM 262
Query: 557 NIVDCLPR----RRQSLLFSATMPKE------LVLKREHTYIDTVGLGSVETPVKV-SKY 605
I LP RQ+L+FSAT+PKE L +K + +I TV V T + V KY
Sbjct: 263 EIQRLLPDPMKVERQTLMFSATVPKEVMKMVHLTMKPDFKFIKTVRDNEVPTHLTVPQKY 322
Query: 606 NI 607
+
Sbjct: 323 VV 324
>gi|283785363|ref|YP_003365228.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
gi|282948817|emb|CBG88418.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
Length = 457
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 111/185 (60%), Gaps = 18/185 (9%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTTQLVP 454
GY+ MT VQ A L A L G+D V+AKTG+GK+ AF LL I+A L T S
Sbjct: 22 GYLSMTPVQAAALPAILAGQDVRVQAKTGSGKTAAFGLGLLQHIDAALFKTQS------- 74
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
L+LCPTRELA Q+A E L ++ +LTL GG F + L+ P I+VAT
Sbjct: 75 ----LVLCPTRELADQVAGELRRLARSMPNTKILTLCGGQPFGAQRDSLQHAP-HIIVAT 129
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574
PGRLLDH++ + V L GL LV+DEAD +LD+GF ++ ++ P RQ+LLFSAT
Sbjct: 130 PGRLLDHLQKGT---VSLEGLTTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSAT 186
Query: 575 MPKEL 579
P+ +
Sbjct: 187 WPEAI 191
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 117/199 (58%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P ++A+T G+ + T +Q ++ L G+D + +A+TGTGK+ AF LP I
Sbjct: 4 FADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLINK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K I L++ PTRELA Q+A E I L G L + GG
Sbjct: 64 IPKEEDR--------IVALVMTPTRELAIQVAEE-IGKLSRFKGTRSLPIYGGQDIVRQI 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ P QI++ TPGRLLDHI K+ ++L +K +VLDEAD +LD+GF D+++I+
Sbjct: 115 RALKKKP-QIIIGTPGRLLDHINRKT---IKLDDVKTVVLDEADEMLDMGFMDDIQSILK 170
Query: 561 CLPRRRQSLLFSATMPKEL 579
+P RQ++LFSATMP +
Sbjct: 171 LVPEDRQTMLFSATMPANI 189
>gi|358636156|dbj|BAL23453.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 480
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 138/260 (53%), Gaps = 22/260 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+ P ++A+ GY T +Q+ + L G+D + A+TGTGK+ F LP +
Sbjct: 3 FADLGLIPELLRAVADTGYTTPTPIQQQAIPVVLAGRDIMGGAQTGTGKTAGFTLPLLNR 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + S+ST+ P+ LIL PTRELA Q+ E++ + + + GG K
Sbjct: 63 LARHASASTSPARHPVRALILAPTRELAMQV-FESVKTYSKYVPLRTTCIYGGVDMKPQI 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L + +I+VATPGRLLDH++ K ++ L ++MLVLDEAD +LD+GF D+ I+D
Sbjct: 122 QELRNG-VEIVVATPGRLLDHVQQK---TIVLNQVEMLVLDEADRMLDMGFIPDIRRILD 177
Query: 561 CLPRRRQSLLFSATM--------------PKELVLKREHTYIDTVGLGSVETPVKVS-KY 605
LP RQSLLFSAT P+ + + R +T +T+ V PV K
Sbjct: 178 LLPASRQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNTVSETI--THVVHPVSAGLKR 235
Query: 606 NIYVFVLVLSIKIQAFYIIC 625
N+ V +L QA +
Sbjct: 236 NLLVHLLRHEPDTQALVFVA 255
>gi|343087345|ref|YP_004776640.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342355879|gb|AEL28409.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 565
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + G+S ++A+ GY Q + +Q T+ L+G D + +A+TGTGK+ AF +P I++
Sbjct: 7 FSDLGVSEEILRAVEDMGYTQPSPIQAQTIPLLLQGADVIGQAQTGTGKTAAFGIPIIDS 66
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ +S Q LILCPTRELA Q+ E + L K + I + GG
Sbjct: 67 I--DPNSKKPQ------ALILCPTRELAVQVEGEIVKLTKYNRKISSTCIYGGESIDRQI 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R L+ QI+V TPGR++DH++ ++ + L + ++VLDEAD +LD+GFR D+E I+
Sbjct: 119 RSLKKG-VQIVVGTPGRIMDHMDRRT---LDLSQVGIIVLDEADEMLDMGFRDDIEKILS 174
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P RQ++ FSATMPK ++
Sbjct: 175 SMPIERQTVFFSATMPKPIL 194
>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
Length = 501
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 15/221 (6%)
Query: 359 KLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKD 418
KL N +K E L+ FD G+S IKA+ +AGY T +Q T+ L+ KD
Sbjct: 23 KLQNNQQK-----ERMTLALDNFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPYILQKKD 77
Query: 419 AVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL 478
+ A+TGTGK+ +F+LP + + K + + +P LIL PTRELA+Q+
Sbjct: 78 VLGIAQTGTGKTASFVLPMLTLLEKGRARAR---IP--RTLILEPTRELAAQVKENFDKY 132
Query: 479 LKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKML 538
NH+ + V L+GG F+ R+LE +L+ATPGRLLDH E L L+G+++L
Sbjct: 133 GVNHN-LNVALLIGGVSFEHQDRKLERG-ADVLIATPGRLLDHFERGKLL---LVGVEIL 187
Query: 539 VLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKEL 579
V+DEAD +L++GF DVE I P RQ+L FSATM E+
Sbjct: 188 VIDEADRMLNMGFIPDVERICKVTPFTRQTLFFSATMAPEI 228
>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
Length = 457
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 114/189 (60%), Gaps = 12/189 (6%)
Query: 391 IKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTT 450
+ L A GY+ MT +Q A L A L GKD +AKTG+GK+ AF L ++ L A +T
Sbjct: 15 LTTLNALGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQH-LDAGRFNTQ 73
Query: 451 QLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQI 510
LV LCPTRELA Q+A E L + I VLTL GG F + + L P I
Sbjct: 74 SLV-------LCPTRELADQVANELRRLARYMPNIKVLTLCGGVPFSIQRDSLTHAP-HI 125
Query: 511 LVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLL 570
+VATPGRLLDH+E ++ V L L+ LVLDEAD +LD+GF ++ ++ +P +RQ+LL
Sbjct: 126 IVATPGRLLDHLEKET---VNLDALQTLVLDEADRMLDMGFADAIDAVIAHVPDQRQTLL 182
Query: 571 FSATMPKEL 579
FSAT P +
Sbjct: 183 FSATWPDAI 191
>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 475
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 22/213 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE- 439
F G+SP + AL AAGY++ T VQ+ + A + G+D +V + TG+GK+ AF+LPAIE
Sbjct: 41 FASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIER 100
Query: 440 -AVLKATSS----------------STTQLVPPIYVLILCPTRELASQIAAEAIALLKNH 482
A L+ T + Q V +L+L PTRELA Q+ A K+
Sbjct: 101 FAQLQKTQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHL 160
Query: 483 DGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDE 542
+ ++++GG + L +P +ILVATPGRLLDH+E + L LKMLVLDE
Sbjct: 161 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERG---RIDLSELKMLVLDE 216
Query: 543 ADHLLDLGFRKDVENIVDCLPRRRQSLLFSATM 575
AD +LD+GF D++ IV P RQ++LFSAT+
Sbjct: 217 ADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 249
>gi|344287857|ref|XP_003415668.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Loxodonta
africana]
Length = 873
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 120/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + ++
Sbjct: 185 AERINN--INILVCTPGRLLQHMD--ETICFHATNLQMLVLDEADRILDMGFADTMNAVI 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis KC583]
gi|421760718|ref|ZP_16197533.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
protein [Bartonella bacilliformis KC583]
gi|411174807|gb|EKS44837.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
bacilliformis INS]
Length = 462
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 116/200 (58%), Gaps = 10/200 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+S IKA+ AGY T +Q T+ L+ KD + A+TGTGK+ +F+LP +
Sbjct: 8 FDNLGLSAKVIKAVQLAGYTAPTPIQSETIPHVLQHKDVLGIAQTGTGKTASFVLPMLTL 67
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ K + + LIL PTRELA+Q+ NH + V L+GG F
Sbjct: 68 LEKGRAKARMP-----RTLILEPTRELAAQVKENFDKYGINHR-LNVALLIGGVSFDHQD 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+LE +L+ATPGRLLDH E + L LMG+++LV+DEAD +LD+GF D+E I
Sbjct: 122 RKLERG-ADVLIATPGRLLDHFERGTLL---LMGVEILVIDEADRMLDMGFIPDIERICK 177
Query: 561 CLPRRRQSLLFSATMPKELV 580
P RQ+L FSATM E++
Sbjct: 178 LTPFTRQTLFFSATMAPEII 197
>gi|336394535|ref|ZP_08575934.1| putative ATP-dependent RNA helicase [Lactobacillus farciminis KCTC
3681]
Length = 507
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/201 (40%), Positives = 122/201 (60%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E + P + A+ AG+ + T +Q T+ + G D + +A+TGTGK+ AF LP +
Sbjct: 2 KFKELDLDPRLLSAVDEAGFEETTPIQAQTIPLVMTGADVIGQAQTGTGKTAAFGLPLLN 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
AV T SS Q LI+ PTRELA Q E L K + V ++ GG+ +
Sbjct: 62 AV--DTQSSDIQ------ALIISPTRELAIQTQEELYRLGKEKK-VKVQSVYGGSDIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R L++ P QI+V TPGR+LDHI + ++L +K +VLDEAD +LD+GF +D+E+I+
Sbjct: 113 IRALKNHP-QIVVGTPGRMLDHINRHT---LKLHNVKTVVLDEADEMLDMGFVEDIESIL 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+P + Q+LLFSATMPK ++
Sbjct: 169 SNVPNKHQTLLFSATMPKPIM 189
>gi|444513156|gb|ELV10279.1| ATP-dependent RNA helicase DDX18 [Tupaia chinensis]
Length = 551
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 184 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 237
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 238 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 295
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 296 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPIRRQ 353
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 354 TMLFSATQTRKVEDLARISLKKEPLYV 380
>gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
Length = 605
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 14/200 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E GI+P +KA+ AGY + +Q +++ LEG+D + +A+TGTGK+ AF LP +
Sbjct: 12 FSELGIAPAIVKAIQEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGKTAAFSLPLLSR 71
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNH-DGIGVLTLVGGTRFKVD 499
+ + Q P +L+L PTRELA Q+ AEAI H VL + GG +
Sbjct: 72 L------NDRQKTP--QMLVLTPTRELAIQV-AEAIQGYGRHIKNFHVLPIYGGQSMGIQ 122
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L+ +P Q++V TPGR+LDHI + L L+ LVLDEAD +L +GF DVE I+
Sbjct: 123 LRQLQRNP-QVIVGTPGRILDHIRRG---KLALENLQSLVLDEADEMLRMGFIDDVETIL 178
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P+ RQ LFSATMPK +
Sbjct: 179 QETPKDRQVALFSATMPKPI 198
>gi|442608782|ref|ZP_21023524.1| Cold-shock DEAD-box protein A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441749831|emb|CCQ09586.1| Cold-shock DEAD-box protein A [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 621
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 117/199 (58%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +SP +KA+ GY + +Q + LE KD + A+TGTGK+ AF LP
Sbjct: 7 FESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALP---- 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L +S Q P I L+L PTRELA Q+A A K G+ VL L GG + +
Sbjct: 63 LLNNIDASVKQ--PQI--LVLTPTRELAIQVAEAFEAYAKYTKGVEVLALYGGQSYGIQL 118
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L QI+VATPGRL+DHI K+ + L LK LVLDEAD +L +GF +DVE+I++
Sbjct: 119 SALRRG-AQIIVATPGRLIDHINRKT---IDLSDLKALVLDEADEMLRMGFIEDVESIME 174
Query: 561 CLPRRRQSLLFSATMPKEL 579
P +Q+ LFSATMPK++
Sbjct: 175 KTPEEKQTCLFSATMPKQI 193
>gi|62630202|gb|AAX88947.1| unknown [Homo sapiens]
Length = 546
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 66 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 120
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 121 -RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNG 177
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 178 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 235
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 236 TMLFSATQTRKVEDLARISLKKEPLYV 262
>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 418
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 119/199 (59%), Gaps = 6/199 (3%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ G+S +A GY T +QE + + G D + A+TGTGK+ AF +P +
Sbjct: 4 FESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L T+ S ++ + LIL PTRELA+Q+ A ++ L + + L L+GG +
Sbjct: 64 -LAVTAGSASRAPSSVRALILVPTRELAAQVEA-SVQLYGRYLPLRSLVLIGGVKINPQM 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L ILVATPGRLLDHI+ +S V L +++LVLDEAD +LD+GF +D+ I+
Sbjct: 122 QKLRRS-VDILVATPGRLLDHIQQRS---VDLSHVEILVLDEADRMLDMGFIRDIRRILA 177
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++RQ+LLFSAT E+
Sbjct: 178 VLPKKRQNLLFSATFSPEI 196
>gi|438000180|ref|YP_007183913.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813113|ref|YP_007449566.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339414|gb|AFZ83836.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779082|gb|AGF49962.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 447
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G+ + L GY++ T +QE+ + L G D + A+TGTGK+ AF+LP I
Sbjct: 16 FREFGLDFSIVSVLDEIGYVKPTLIQESAIPNILSGADFIGAAQTGTGKTAAFVLPIINR 75
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ ++S + + LIL PTRELA Q+ E + L + + L L GG + Q
Sbjct: 76 LVPFANNSISPARHLLRSLILVPTRELADQV-YECVKLYSKNTNLRSLVLFGGVDLE-HQ 133
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L C+ILVATPGRL+ HI + +V L+ + +LVLDEAD +LD+GF DV+ IV
Sbjct: 134 KDLLHKGCEILVATPGRLIAHIIQR---NVSLVNVDILVLDEADRMLDMGFIPDVDRIVR 190
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP++RQSLLFSAT +++
Sbjct: 191 MLPKKRQSLLFSATFSEDV 209
>gi|406607754|emb|CCH40859.1| DEAD box RNA helicase (Hca4), putative [Wickerhamomyces ciferrii]
Length = 746
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F + IS T+ LT + ++ +T +Q+ ++ + L+G D + A+TG+GK++AFL+P IE
Sbjct: 42 QFKDLPISNNTLSGLTESSFVSLTDIQKESIPSALKGDDILGAARTGSGKTLAFLIPVIE 101
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ +A + L LI+ PTRELA QI E + + H+ ++GG K +
Sbjct: 102 KLYRAKWTELDGL----GALIISPTRELAIQIY-EVLVKIGRHNSFSAGLVIGGKDVKFE 156
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
RL IL+ TPGR+L H++ G+ L+MLVLDEAD +LD+GF+K +++IV
Sbjct: 157 MERLSK--INILIGTPGRILQHLDQTVGMDTN--NLQMLVLDEADRILDMGFKKTLDDIV 212
Query: 560 DCLPRRRQSLLFSATMPKEL 579
LP RQ+LLFSAT K +
Sbjct: 213 SNLPPTRQTLLFSATQSKSI 232
>gi|417044094|ref|ZP_11948595.1| ATP-dependent RNA helicase, partial [Lactobacillus rhamnosus MTCC
5462]
gi|328478045|gb|EGF47932.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus MTCC 5462]
Length = 313
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 13/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F E G+ +KA+ +G+ + T +Q T+ LEGKD + +A+TGTGK+ AF LP ++
Sbjct: 2 KFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ KA S I L++ PTRELA Q E L ++ I V + GG +
Sbjct: 62 HIDKADRS--------IQALVISPTRELAIQTQEELYRLGRDKK-IKVQAVYGGADIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+L P QI+V TPGR+LDHI +++L L LVLDEAD +LD+GF D+E IV
Sbjct: 113 IRQLADHP-QIVVGTPGRILDHIGRH---TLKLEHLDTLVLDEADEMLDMGFIDDIEKIV 168
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ +P RQ+LLFSATMP ++
Sbjct: 169 EQMPTERQTLLFSATMPAAIM 189
>gi|216397600|gb|ACJ72832.1| DEAD box polypeptide 18 (predicted) [Oryctolagus cuniculus]
Length = 622
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 142 TLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 195
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 196 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 253
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 254 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 311
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 312 TMLFSATQTRKVEDLARISLKKEPLYV 338
>gi|422022629|ref|ZP_16369136.1| ATP-dependent RNA helicase DbpA [Providencia sneebia DSM 19967]
gi|414095799|gb|EKT57459.1| ATP-dependent RNA helicase DbpA [Providencia sneebia DSM 19967]
Length = 458
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 119/200 (59%), Gaps = 13/200 (6%)
Query: 381 FDECGISPL-TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
F E + P + L GY+ MT +QEA L A L GKD +AKTG+GK+ AF L ++
Sbjct: 4 FAELKVLPAEQLNNLNELGYLAMTPIQEAALPAILNGKDVRAQAKTGSGKTAAFGLGLLQ 63
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ A +T LV LCPTRELA Q+A+E L + I +LT+ GG F +
Sbjct: 64 HI-DAKKFNTQALV-------LCPTRELADQVASELRRLARYMPNIKILTVCGGVPFSI- 114
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
QR I+VATPGRLLDH++ ++ ++L L+ LVLDEAD +LD+GF D++ ++
Sbjct: 115 QRDSLIHAAHIIVATPGRLLDHLQKET---IKLDDLQTLVLDEADRMLDMGFADDIDKVI 171
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+LLFSAT P+ +
Sbjct: 172 AYAPHSRQTLLFSATWPEAI 191
>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase [Methanobacterium sp. AL-21]
gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
Length = 529
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 124/211 (58%), Gaps = 13/211 (6%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+ + RF + IS +A+ G+ + T +Q + LEGKD +A+TGTGK+ AF +
Sbjct: 1 MEKLRFKDLNISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGI 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P +E V S+ Q V ILCPTRELA Q+A E L K IG+L + GG
Sbjct: 61 PILETV--DPSNRDLQAV------ILCPTRELAIQVAEEMKKLSKYMRKIGILPVYGGQP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
+ + L+ QI++ TPGR++DH+ + + + +KML+LDEAD +LD+GFR+D+
Sbjct: 113 IERQIKALKKG-VQIIIGTPGRVMDHMRRGT---IDMGSVKMLILDEADEMLDMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATM-PKELVLKREH 585
E ++D +P RQ LLFSATM P L + R +
Sbjct: 169 EFVLDYIPDERQILLFSATMSPDILYITRRY 199
>gi|350593265|ref|XP_001927639.3| PREDICTED: ATP-dependent RNA helicase DDX18 [Sus scrofa]
Length = 669
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T++A+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 189 TLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 242
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L ++
Sbjct: 243 LRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-ANG 300
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 301 INIVVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 358
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 359 TMLFSATQTRKVEDLARISLKKEPLYV 385
>gi|433546496|ref|ZP_20502815.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182213|gb|ELK39795.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 540
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GI I AL A G + T +QE + + GKDA+ +A+TGTGK++AFLLP +E
Sbjct: 9 FLRLGIRKEWIDALQANGIAEPTPIQEKAIPVLMTGKDAISQAQTGTGKTLAFLLPILEK 68
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T+ + LIL PTRELA QI AE L D + VL + GG
Sbjct: 69 VDPETND--------VQTLILTPTRELALQITAEVQKLTAAVDEVHVLAVYGGQDVDRQL 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L + Q+++ATPGRLLDHI ++ L + MLVLDEAD +L +GF +VE+I+
Sbjct: 121 RKL-AGKKQVVIATPGRLLDHIRRG---TIDLSTVSMLVLDEADQMLHMGFLPEVEDILA 176
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ++LFSATM ++
Sbjct: 177 QTPADRQTMLFSATMTPQV 195
>gi|407849139|gb|EKG03976.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 511
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 139/247 (56%), Gaps = 27/247 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ I A AG+ TR+Q AT+ EG+D + A+TG+GK+ A++LP +
Sbjct: 39 FKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVNW 98
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L T VP + VL++ PTRELA Q+ A+ + +L + G+ V TLVGG VDQ
Sbjct: 99 LL------TQSKVPYLSVLVMVPTRELAQQVTAQFV-MLGHSVGLRVATLVGGADM-VDQ 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
S ++V TPGR+ DH++N G +L+ L LVLDEAD +LD+ + K+++ I++
Sbjct: 151 ACELSKRPHVVVGTPGRIKDHLQNTKGF--KLVKLHALVLDEADKMLDMDYEKEIDAILE 208
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPV--KVSKYNIYVFVLVLSIKI 618
LP RQ++LFSAT+ +T ID + S+ PV +V + N V L
Sbjct: 209 HLPHSRQTMLFSATL---------NTKIDRLQKASLNDPVLLEVHRKNTTVDTL------ 253
Query: 619 QAFYIIC 625
+ +Y+ C
Sbjct: 254 KQYYVFC 260
>gi|399047526|ref|ZP_10739540.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398054666|gb|EJL46780.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 540
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F GI I AL A G + T +QE + + GKDA+ +A+TGTGK++AFLLP +E
Sbjct: 9 FLRLGIRKEWIDALQANGIAEPTPIQEKAIPVLMTGKDAISQAQTGTGKTLAFLLPILEK 68
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
V T+ + LIL PTRELA QI AE L D + VL + GG
Sbjct: 69 VDPETND--------VQALILTPTRELALQITAEVQKLTAAVDEVHVLAVYGGQDVDRQL 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L + Q+++ATPGRLLDHI ++ L + MLVLDEAD +L +GF +VE+I+
Sbjct: 121 RKL-AGKKQVVIATPGRLLDHIRRG---TIDLSTVSMLVLDEADQMLHMGFLPEVEDILA 176
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RQ++LFSATM ++
Sbjct: 177 QTPADRQTMLFSATMTPQV 195
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 117/199 (58%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY Q T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 119 FIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILER 178
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + +P I VLI+ PTRELA Q+ + I L I +VGG KV +
Sbjct: 179 LL-----FRPRRIPAIRVLIITPTRELAVQLHS-MIEKLAQFTDIRCSLVVGGLSSKVQE 232
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L + P I+VATPGR++DH+ N SV L L +LVLDEAD LL+LGFR+++ +V
Sbjct: 233 VALRTHP-DIVVATPGRMIDHLRNTQ--SVGLEELAILVLDEADRLLELGFREEIHELVK 289
Query: 561 CLPRRRQSLLFSATMPKEL 579
P RRQ++LFSATM E+
Sbjct: 290 LCPSRRQTMLFSATMTDEV 308
>gi|402895161|ref|XP_003910702.1| PREDICTED: probable ATP-dependent RNA helicase DDX10, partial
[Papio anubis]
Length = 778
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 160 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 219
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 220 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 274
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + I+
Sbjct: 275 AERINN--INILVCTPGRLLQHMDET--VSFHATDLQMLVLDEADRILDMGFADTMNAII 330
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 331 ENLPKKRQTLLFSATQTKSV 350
>gi|342184289|emb|CCC93770.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 515
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 147/264 (55%), Gaps = 37/264 (14%)
Query: 355 ISKNKLNGNGEKKEKRE-EEP--ILSQKR---------------FDECGISPLTIKALTA 396
+ K K +G KKE+RE +EP +LS+K F G+ IKA
Sbjct: 1 MVKVKTSGVRRKKERRECDEPSHLLSKKSIGSELLDNEESKDTTFKSLGLCEELIKACDE 60
Query: 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
AG+ TR+Q AT+ EG+D + A+TG+GK+ A++LP + +L T VP +
Sbjct: 61 AGWRMPTRIQVATIPVVAEGRDVIGVAQTGSGKTGAYVLPLVNWLL------TQSKVPYL 114
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
VL++ PTRELA Q+ A+ I +L N G+ V TLVGG VDQ S ++V TPG
Sbjct: 115 SVLVMVPTRELAQQVTAQFI-MLGNSVGLRVATLVGGADM-VDQACELSKRPHVIVGTPG 172
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+ DH+ N G +L+ L LVLDEAD +L++ + K+++ I++ L +RQ+LLFSAT+
Sbjct: 173 RVKDHLNNTKGF--QLVKLHALVLDEADKMLEMDYEKEIDAILEHLTYKRQTLLFSATL- 229
Query: 577 KELVLKREHTYIDTVGLGSVETPV 600
+T ID + S+ PV
Sbjct: 230 --------NTKIDRLQKASLRDPV 245
>gi|222149119|ref|YP_002550076.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
gi|221736104|gb|ACM37067.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
Length = 673
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 12/215 (5%)
Query: 382 DECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV 441
D GI P +AL GY +T VQ+A + LEG+DA+V A+TG+GK++AF L A+
Sbjct: 3 DYDGIVPAIAEALRKRGYATLTPVQQAMIDTDLEGRDALVSAQTGSGKTVAFGL-ALAPT 61
Query: 442 LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQR 501
L + + + V P+ L + PTRELA Q+ E L +N I T VGG + ++R
Sbjct: 62 LLGSENRFGRAVKPL-ALCIAPTRELALQVQRELEWLYENTGAI-FATCVGGMDIRNERR 119
Query: 502 RLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDC 561
LE I+V TPGRL DHI ++ + L GL+ +V+DEAD +LDLGFR+D+E I+
Sbjct: 120 ALERG-AHIIVGTPGRLRDHITRRA---LDLSGLRAVVMDEADEMLDLGFREDLEFILKE 175
Query: 562 LPRRRQSLLFSATMPKELV-----LKREHTYIDTV 591
P R++L+FSAT+P+ + +R+ I+TV
Sbjct: 176 SPDERRTLMFSATVPRSIADLARSYQRDAKRIETV 210
>gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
Eklund]
gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
Eklund]
Length = 371
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 141/234 (60%), Gaps = 15/234 (6%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
K F GIS I L+ G T +QE ++ +GKD + +A+TGTGK++AFLLP
Sbjct: 2 KDFKNLGISKNIIDVLSREGIKSPTPIQENSIEFIRKGKDVIAEAQTGTGKTLAFLLPIF 61
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKV 498
E + + S+ Q VLI+ PTRELA QI EA+ L K D I +L GG +
Sbjct: 62 ENI--SLESNFVQ------VLIVTPTRELAIQITEEAMKLKKAKD-INILAAYGGKDIQS 112
Query: 499 DQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENI 558
++L+ + Q+++ATPGRLLDH+ N+S +++L LK LVLDEAD +L +GF+ +VE I
Sbjct: 113 QLKKLKGN-IQLIIATPGRLLDHL-NRS--TIKLDKLKTLVLDEADQMLYMGFKNEVEKI 168
Query: 559 VDCLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKVSKYNIYVFVL 612
++ ++ Q+L FSATM E V K + Y+ + SV+T +++ NI FV+
Sbjct: 169 INYTSKKYQTLCFSATMNSE-VKKLAYRYMKDPKVVSVKTE-EITLKNIKQFVV 220
>gi|27371129|gb|AAH23303.1| Ddx10 protein, partial [Mus musculus]
Length = 681
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|357153209|ref|XP_003576375.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
27-like [Brachypodium distachyon]
Length = 544
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 141/244 (57%), Gaps = 24/244 (9%)
Query: 339 EDEHDFEEQVELIRKEISKNKLNGNGEKKEKREEEPILSQKRFDECGISPLTIKALTAAG 398
EDE E++ + I K+++K NG G IL+ K F + IS LT KA+
Sbjct: 19 EDEMGMEDK-DKIAKKVNKGN-NGGG----------ILTSKLFSDLYISDLTAKAIREMN 66
Query: 399 YIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP--PI 456
Y +T++Q ++ + G D + AKTG+GK++AFL+PAIE + KA +P
Sbjct: 67 YTHLTQIQARSMPNLMLGNDVLGSAKTGSGKTLAFLIPAIELLHKAC------FMPRNGT 120
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
V+++CPTRELA Q A L+K H + ++GGT + + +L +LVATPG
Sbjct: 121 GVIVVCPTRELAIQTHNVAKELMKYHSQT-LAYVIGGTNMRNEANQLVKG-INLLVATPG 178
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
RLLDH+ N + + + LK L++DEAD +L+ F +D++ I LPR RQ++LFSAT
Sbjct: 179 RLLDHLRNTTSFNYK--RLKCLIIDEADRILEQNFEEDMKQIFKRLPRDRQTVLFSATQT 236
Query: 577 KELV 580
+++V
Sbjct: 237 QKVV 240
>gi|336310719|ref|ZP_08565690.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865801|gb|EGM70809.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 432
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 132/226 (58%), Gaps = 22/226 (9%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF+ SP ++A++ GY QMT +Q+ + A G+D + A+TGTGK+ AF LP ++
Sbjct: 2 RFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+++ S + L VLIL PTRELA+Q+A A K + VLT+ GG + +
Sbjct: 62 KMVENPSET---LKSNARVLILTPTRELAAQVADNVTAYCK-YLNFSVLTIYGGVKVETQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
++L+ ++VATPGRLL+H+ + ++ L + LVLDEAD +LD+GF D++ I+
Sbjct: 118 AQKLKRG-ADVIVATPGRLLEHL---TACNLSLSNVDFLVLDEADRMLDMGFSADIQKIL 173
Query: 560 DCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ ++RQ+LLFSAT P+ + + +++T DTV
Sbjct: 174 QAVNKKRQNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTV 219
>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 486
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/188 (42%), Positives = 114/188 (60%), Gaps = 5/188 (2%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQ 451
+A+ GY MT +Q + L G+D + A+TGTGK+ AF LP ++ +L+ SSS +
Sbjct: 16 RAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQRLLRHESSSASP 75
Query: 452 LVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQIL 511
P+ L+L PTRELA Q+A + IAL H + + GG K L+ ++L
Sbjct: 76 ARHPVRALVLLPTRELADQVARQ-IALYARHTKLRSTVVFGGIDMKPQTLELKKG-VEVL 133
Query: 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571
VATPGRLLDHIE K+ + L ++ +VLDEAD +LD+GF D++ I+ LP+ R +LLF
Sbjct: 134 VATPGRLLDHIEAKNAV---LNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKERTTLLF 190
Query: 572 SATMPKEL 579
SAT E+
Sbjct: 191 SATFSPEI 198
>gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
JF-1]
Length = 531
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + +SP IKA+ GY + T +Q+ + L G D +A TGTGK+ AF +PAIE
Sbjct: 6 FSDLQLSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIEL 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
A + T ++LCP+RELA Q+ E L + GI +L + GG +
Sbjct: 66 CQPANRNVQT--------IVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQI 117
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ L S QI++ TPGR++DHI+ K+ L L + ++VLDEAD +LD+GFR+D+E I+
Sbjct: 118 KAL-SRGVQIIIGTPGRVIDHIKRKTLL---LDAVSLVVLDEADQMLDMGFREDIEEILS 173
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P+ RQ+++ SAT P E++
Sbjct: 174 HIPKERQTVILSATFPPEIL 193
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 119/199 (59%), Gaps = 9/199 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E +S ++A A GY + T +Q A + L G+D A TG+GK+ AF LP +E
Sbjct: 196 FLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLER 255
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L + VP I VLIL PTRELA+ + + I L I +VGG KV +
Sbjct: 256 LL-----FRPKRVPAIRVLILTPTRELAAPVHS-MIEKLAQFTDIRCCLIVGGLSTKVQE 309
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L S P I+VATPGR++DH+ N LSV L L +L+LDEAD LL+LGF +++ ++
Sbjct: 310 VALRSMP-DIVVATPGRIIDHLRN--SLSVGLEDLAILILDEADRLLELGFSAEIQELIR 366
Query: 561 CLPRRRQSLLFSATMPKEL 579
PRRRQ++LFSATM +E+
Sbjct: 367 MCPRRRQTMLFSATMTEEI 385
>gi|344290046|ref|XP_003416750.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Loxodonta africana]
Length = 670
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 190 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK------ 243
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ H L ++GG+ + ++L ++
Sbjct: 244 LKFMPRNGTGVLILSPTRELAMQTFGVLKELMTYHVHTYGL-IMGGSNRSAEAQKL-ANG 301
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 302 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPVRRQ 359
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 360 TMLFSATQTRKVEDLARISLKKEPLYV 386
>gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
Length = 529
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 121/205 (59%), Gaps = 7/205 (3%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
EP + RF + ++P + A+ G+ T +Q L L G+DA+ +A+TGTGK+ A
Sbjct: 135 EPQEGKTRFHDFNLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAA 194
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
FL+ I +L+ + P LI+ PTREL QIA +A AL K + G+ V+T VG
Sbjct: 195 FLISIITQLLQTPPPKERYMGEP-RALIIAPTRELVVQIAKDAAALTK-YTGLNVMTFVG 252
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G F ++LE+ C ILVATPGRLLD N+ G V L ++++VLDEAD +LD+GF
Sbjct: 253 GMDFDKQLKQLEARFCDILVATPGRLLDF--NQRG-EVHLDMVEVMVLDEADRMLDMGFI 309
Query: 553 KDVENIVDCLPRR--RQSLLFSATM 575
V I+ P + RQ+LLFSAT
Sbjct: 310 PQVRQIIRQTPHKGERQTLLFSATF 334
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 124/222 (55%), Gaps = 18/222 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+E +S +KA+ G+ Q T +Q T+ L GKD + A TG+GK+ AFLLP +E
Sbjct: 184 FEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILER 243
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L S I VL+L PTRELA Q + + L I +VGG K +
Sbjct: 244 LLFRDSEYRA-----IRVLVLLPTRELALQCQS-VLENLAQFSNITSCLIVGGLSNKAQE 297
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L P +++ATPGRL+DH+ N G+ L L++L+LDEAD LLD+GF+ ++ IVD
Sbjct: 298 VELRKRP-DVVIATPGRLIDHLLNAHGIG--LEDLEILILDEADRLLDMGFKDEINKIVD 354
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPVKV 602
P RQ++LFSAT+ E + T+ S++ P++V
Sbjct: 355 SCPTSRQTMLFSATLNDE---------VKTLAKLSLQQPIRV 387
>gi|440780973|ref|ZP_20959444.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
gi|440221561|gb|ELP60766.1| ATP-dependent RNA helicase [Clostridium pasteurianum DSM 525]
Length = 367
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 119/199 (59%), Gaps = 13/199 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E GIS I L G + T +Q+ ++ G+D + +A+TGTGK++AFLLP E
Sbjct: 3 FKELGISEDIINTLKKTGITEPTVIQKESIRFIKNGRDIIAEAQTGTGKTLAFLLPIFEN 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + +SS Q LI+ PTRELA QI EA+ L + D I +L GG
Sbjct: 63 I--SVNSSAIQ------ALIVTPTRELAIQITEEAMKLKEAKD-INILAAYGGKDIGSQM 113
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ +++ATPGRLLDH+ K+ + LM LK LVLDEAD +L +GF+ D+ENI+
Sbjct: 114 KKLKG-SIHLIIATPGRLLDHLARKT---INLMNLKTLVLDEADQILLMGFKNDIENIIK 169
Query: 561 CLPRRRQSLLFSATMPKEL 579
++RQ+L FSATM E+
Sbjct: 170 ETSKKRQTLCFSATMNAEV 188
>gi|334329818|ref|XP_003341271.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 2
[Monodelphis domestica]
Length = 881
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 69 RFSDFPLSRKTLKGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 128
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 129 TLYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 183
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + IL+ TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 184 SERI--NQINILICTPGRLLQHMDETTYFHA--TNLQMLVLDEADRILDMGFADTMNAII 239
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 240 ENLPKKRQTLLFSATQTK 257
>gi|126326670|ref|XP_001371368.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 isoform 1
[Monodelphis domestica]
Length = 879
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 9/198 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 69 RFSDFPLSRKTLKGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 128
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + +S L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 129 TLYRLQWTSADGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 183
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + IL+ TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 184 SERI--NQINILICTPGRLLQHMDETTYFHA--TNLQMLVLDEADRILDMGFADTMNAII 239
Query: 560 DCLPRRRQSLLFSATMPK 577
+ LP++RQ+LLFSAT K
Sbjct: 240 ENLPKKRQTLLFSATQTK 257
>gi|350572246|ref|ZP_08940551.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349790502|gb|EGZ44411.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 457
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 117/196 (59%), Gaps = 5/196 (2%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F G+ + ALT GY T +QEA + L G D + A+TGTGK+ AF+LP++E
Sbjct: 3 QFSALGLGGEIVSALTEQGYETPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLE 62
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ + ++ST+ + P+ +L+L PTRELA QI +KN + L GG
Sbjct: 63 RLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLP-LRHTVLFGGVSMDKQ 121
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L + C+I+VAT GRLLDH++ K ++ L ++++VLDEAD +LD+GF D+ I+
Sbjct: 122 TAELRAG-CEIVVATVGRLLDHVKQK---NINLNKVEIVVLDEADRMLDMGFIDDIRTIM 177
Query: 560 DCLPRRRQSLLFSATM 575
P+ RQ+LLFSAT
Sbjct: 178 QMFPKPRQTLLFSATF 193
>gi|185132644|ref|NP_001117993.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
gi|52547136|gb|AAU81664.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
Length = 663
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 143/245 (58%), Gaps = 30/245 (12%)
Query: 364 GEKKEKREEE-----PILSQKRFDE---CGISPL----TIKALTAAGYIQMTRVQEATLS 411
GEK E EEE P F++ ++PL T+K + G+ MT +Q ++
Sbjct: 144 GEKFEDTEEEDEPKLPSGLTGAFEDTSFASLAPLVSENTLKGVKEMGFEHMTEIQHKSIQ 203
Query: 412 ACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVP--PIYVLILCPTRELAS 469
LEG+D + AKTG+GK++AFL+P+IE + K + +P V+IL PTRELA
Sbjct: 204 PLLEGRDILAAAKTGSGKTLAFLIPSIELIYK------LKFMPRNGTGVVILSPTRELAM 257
Query: 470 QIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLS 529
Q L+ +H L ++GG+ + +RL ++ ILVATPGRLLDH++N +G
Sbjct: 258 QTYGVMKELMTHHVHTFGL-IMGGSNRTAEAQRL-ANGVNILVATPGRLLDHLQNAAGFM 315
Query: 530 VRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMPKE------LVLKR 583
+ L+ L++DEAD +L++GF ++++ I+ LP+RRQ++LFSAT ++ + LK+
Sbjct: 316 YK--NLQCLIIDEADRILEVGFEEELKQIIKLLPKRRQTMLFSATQTRKVEDLARISLKK 373
Query: 584 EHTYI 588
E Y+
Sbjct: 374 EPLYV 378
>gi|71665094|ref|XP_819521.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70884825|gb|EAN97670.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 511
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 139/247 (56%), Gaps = 27/247 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+ I A AG+ TR+Q AT+ EG+D + A+TG+GK+ A++LP +
Sbjct: 39 FKALGLCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVNW 98
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+L T VP + VL++ PTRELA Q+ A+ + +L + G+ V TLVGG VDQ
Sbjct: 99 LL------TQSKVPYLSVLVMVPTRELAQQVTAQFV-MLGHSVGLRVATLVGGADM-VDQ 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
S ++V TPGR+ DH++N G +L+ L LVLDEAD +LD+ + K+++ I++
Sbjct: 151 ACELSKRPHVVVGTPGRIKDHLQNTKGF--QLVKLHALVLDEADKMLDMDYEKEIDAILE 208
Query: 561 CLPRRRQSLLFSATMPKELVLKREHTYIDTVGLGSVETPV--KVSKYNIYVFVLVLSIKI 618
LP RQ++LFSAT+ +T ID + S+ PV +V + N V L
Sbjct: 209 HLPHSRQTMLFSATL---------NTKIDRLQKASLNDPVLLEVHRKNTTVDTL------ 253
Query: 619 QAFYIIC 625
+ +Y+ C
Sbjct: 254 KQYYVFC 260
>gi|326433585|gb|EGD79155.1| helicase pitchoune [Salpingoeca sp. ATCC 50818]
Length = 649
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 123/196 (62%), Gaps = 13/196 (6%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV--LK 443
+S T+KA+ G+ MT +Q T+ L G+D + AKTG+GK++AFL+PA+E + LK
Sbjct: 179 VSEPTMKAIEGFGFTHMTEIQYKTIPFLLTGRDLLGAAKTGSGKTLAFLIPAVERLRQLK 238
Query: 444 ATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRL 503
T + T + IL PTRELA QI I+LL++H ++ +GG+ K + RRL
Sbjct: 239 FTPKNGTGCI------ILTPTRELAQQIYGVLISLLEHHHQTHGIS-IGGSDKKAEARRL 291
Query: 504 ESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLP 563
+ ILV TPGRLLDH++N + + L+ML++DEAD +L +GF + IV +P
Sbjct: 292 -GNGVNILVCTPGRLLDHLQN---TNFKFDRLQMLIIDEADRILQIGFEDTMRAIVRLIP 347
Query: 564 RRRQSLLFSATMPKEL 579
++RQ++LFSAT +++
Sbjct: 348 QKRQTVLFSATQTRKV 363
>gi|26342749|dbj|BAC35031.1| unnamed protein product [Mus musculus]
Length = 681
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 130 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 184
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ + L+MLVLDEAD +LD+GF + I+
Sbjct: 185 AERINN--INILVCTPGRLLQHMDE--TICFHATNLQMLVLDEADRILDMGFADTMNAII 240
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 241 ENLPKKRQTLLFSATQTKSV 260
>gi|389877863|ref|YP_006371428.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388528647|gb|AFK53844.1| DeaD [Tistrella mobilis KA081020-065]
Length = 521
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F++ G+S ++A+T AGY Q T +QE + L+G+D + A+TGTGK+ +F LP I+
Sbjct: 3 FEDLGLSAEVLRAVTDAGYNQPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMIDI 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + LI+ PTRELA QIA E + + + L+GG F DQ
Sbjct: 63 LAQGRVRARMP-----RSLIMTPTRELAQQIA-ENFNTYGKYTPLSMALLIGGVSFS-DQ 115
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+ +L+ATPGRLLDH E V L +++LV+DEAD +LD+GF D+E I
Sbjct: 116 EKALDKGVDVLIATPGRLLDHFERGR---VLLTDVRILVVDEADRMLDMGFIPDLERIAS 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP+ RQ+LLFSATMP E+
Sbjct: 173 LLPQIRQTLLFSATMPPEI 191
>gi|440229156|ref|YP_007342949.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440050861|gb|AGB80764.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 618
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 18/202 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPA--- 437
F + G+S I AL GY++ + +Q + L G+D + A+TG+GK+ AF LP
Sbjct: 9 FADLGLSAPIISALNDLGYVKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 68
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
I+A LKA +L+L PTRELA Q+A K+ +G+ V+ L GG R+
Sbjct: 69 IDASLKAPQ-----------ILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYD 117
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
V R L P QI+V TPGRLLDH+ K G ++ L L LVLDEAD +L +GF +DVE
Sbjct: 118 VQLRALRQGP-QIVVGTPGRLLDHL--KRG-TLNLSNLSGLVLDEADEMLRMGFIEDVET 173
Query: 558 IVDCLPRRRQSLLFSATMPKEL 579
I+ +P Q+ LFSATMP+ +
Sbjct: 174 IMAEIPAEHQTALFSATMPEAI 195
>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
gi|423211117|ref|ZP_17197670.1| hypothetical protein HMPREF1169_03188 [Aeromonas veronii AER397]
gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
gi|404614119|gb|EKB11123.1| hypothetical protein HMPREF1169_03188 [Aeromonas veronii AER397]
Length = 459
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 118/202 (58%), Gaps = 12/202 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
++ F +SP + LT+ GY+QMT +Q +L L+GKD + KAKTG+GK+ AF L
Sbjct: 1 MNNSEFSSLNLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGL 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
+L + + + + L+LCPTRELA Q+A E L + + ++TL GGT
Sbjct: 61 ----GLLAKLNVNRLE----VQALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
Q S I V TPGR+L H+E + + L GLK LVLDEAD +LD+GF +D+
Sbjct: 113 -TAPQSATLSFGAHIAVGTPGRILKHLEQGT---LELSGLKTLVLDEADRMLDMGFGEDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPK 577
++ P RRQ+LLFSAT P+
Sbjct: 169 NRVISYAPERRQTLLFSATYPE 190
>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 504
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FDE G++P +KA++ GY + T +Q + L G+D + A+TGTGK+ +F LP I+
Sbjct: 3 FDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMIDK 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + + + LIL PTRELA+Q+A E ++ + + L+GG F +
Sbjct: 63 LSRGRARARMP-----RSLILEPTRELAAQVA-ENFETYGKYNKLSMALLIGGVSFGDQE 116
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
++L+ +L+ATPGRLLDH V L G+++LV+DEAD +LD+GF D+E I
Sbjct: 117 KKLDRG-VDVLIATPGRLLDHCNRGK---VLLTGVQILVIDEADRMLDMGFIPDIEEICK 172
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RQ+L FSATMP E+
Sbjct: 173 KLPFTRQTLFFSATMPPEI 191
>gi|419957755|ref|ZP_14473821.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
cloacae GS1]
gi|388607913|gb|EIM37117.1| ATP-dependent RNA helicase RhlE [Enterobacter cloacae subsp.
cloacae GS1]
Length = 460
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 122/199 (61%), Gaps = 7/199 (3%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G++P ++A+ GY++ T +Q+ + A L+G+D + A+TGTGK+ F LP +E
Sbjct: 3 FDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLEL 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++K + + P+ LIL PTRELA+QI E + + I L + GG
Sbjct: 63 LVKNQPHAKGRR--PVRALILTPTRELAAQI-GENVREYSRYLNIRSLVVFGGVSINPQM 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+L +LVATPGRLLD +E+++ +V+L +++LVLDEAD +LD+GF D+ ++
Sbjct: 120 MKLRGG-VDVLVATPGRLLD-LEHQN--AVKLDNIEILVLDEADRMLDMGFIHDIRRVLA 175
Query: 561 CLPRRRQSLLFSATMPKEL 579
LP RRQ+LLFSAT E+
Sbjct: 176 KLPTRRQNLLFSATFSDEI 194
>gi|409395299|ref|ZP_11246383.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. Chol1]
gi|409120101|gb|EKM96466.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. Chol1]
Length = 468
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 373 EPILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
EP+ + RF + ++P + A+ G+ T +Q L L+G+DA+ +A+TGTGK+ A
Sbjct: 74 EPVEGKTRFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLKGQDAIGRAQTGTGKTAA 133
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVG 492
FL+ I +L+ + P LI+ PTREL QIA +A+ L K + G+ V++ VG
Sbjct: 134 FLISTITQLLQTPPPKERYMGEP-RALIIAPTRELVVQIANDALDLAK-YTGLNVMSFVG 191
Query: 493 GTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFR 552
G F ++LES C ILVATPGRLLD N+ G V L ++++VLDEAD +LD+GF
Sbjct: 192 GMDFDKQLKQLESRFCDILVATPGRLLDF--NQRG-EVHLDMVEVMVLDEADRMLDMGFI 248
Query: 553 KDVENIVDCLPRR--RQSLLFSATMPKELV-LKREHT 586
V I+ P + RQ+LLFSAT ++++ L R+ T
Sbjct: 249 PQVRQIIRQTPMKGERQTLLFSATFTEDVMNLARQWT 285
>gi|377579040|ref|ZP_09808013.1| ATP-independent RNA helicase DbpA [Escherichia hermannii NBRC
105704]
gi|377539689|dbj|GAB53178.1| ATP-independent RNA helicase DbpA [Escherichia hermannii NBRC
105704]
Length = 459
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 134/244 (54%), Gaps = 27/244 (11%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPAIEAVLKATSSSTTQLVP 454
GY MT VQ A L A L GKD +AKTG+GK+ AF LL I+A T S
Sbjct: 24 GYQTMTPVQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDASRFITQS------- 76
Query: 455 PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVAT 514
L+LCPTRELA Q+A E L + I VLTL GG F + L+ P I+VAT
Sbjct: 77 ----LVLCPTRELADQVAKELRRLARYLPNIKVLTLCGGQPFGAQRDSLQHAP-HIIVAT 131
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSAT 574
PGRLLDH+E + V L LK LVLDEAD +LD+GF +++++ P +RQ+LLFSAT
Sbjct: 132 PGRLLDHLEKGT---VSLEALKTLVLDEADRMLDMGFSDAIDDVIRHAPPQRQTLLFSAT 188
Query: 575 MPKELV-----LKR--EHTYIDTV-GLGSVETPV-KVSKYNIYVFVLVLSIKIQAFYIIC 625
P+ + ++R +H ID+V L +VE + S+ +L L K Q +
Sbjct: 189 WPESIAAISSRVQRNAQHIEIDSVDALPAVEQQFYEASRRQKIPLLLSLLSKHQPASCVV 248
Query: 626 FVYT 629
F T
Sbjct: 249 FCNT 252
>gi|427785565|gb|JAA58234.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]
Length = 596
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 22/225 (9%)
Query: 375 ILSQKRFDEC--GISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
+LS +F +S T+KA+ G+ +MT +Q T+ LEGKD V AKTG+GK++A
Sbjct: 96 VLSDTQFSSLRGKVSDATLKAIEGMGFKRMTEIQAKTIPHLLEGKDVVAAAKTGSGKTLA 155
Query: 433 FLLPAIEAV--LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHD-GIGVLT 489
FL+PA+E + LK + T L++ PTRELA Q LL + +G+
Sbjct: 156 FLIPAVELLYKLKFMPRNGTG------ALVIAPTRELAMQTFGVLQELLSGQNQTLGL-- 207
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL 549
++GGT + + +L + LVATPGRLLDH++N S + L+ L++DEAD +LD+
Sbjct: 208 IMGGTNRQSEASKL-AKGVNFLVATPGRLLDHLQNSSEFVYK--NLQCLIIDEADRILDI 264
Query: 550 GFRKDVENIVDCLPRRRQSLLFSATMPK------ELVLKREHTYI 588
GF ++V+ I+ LP+RRQ++LFSAT+ K ++ LK E YI
Sbjct: 265 GFEEEVKQILRILPKRRQTMLFSATLTKKTEDLVKVALKSEPLYI 309
>gi|421185572|ref|ZP_15642971.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB418]
gi|399968835|gb|EJO03266.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB418]
Length = 521
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 13/200 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+F+E G+SP + A+ GY + T +QE T+ ++G D + +A+TGTGK+ AF LP +E
Sbjct: 2 KFEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILE 61
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V P I L++ PTRELA Q E + L + + + GG +
Sbjct: 62 EVDPKN--------PQIQALVISPTRELAMQ-TEEELNKLGSDKHVKTQVIFGGYDIRRQ 112
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L+ P QILV TPGRL+DH+ N+ + R G+K LV+DEAD +L++GF +D+E IV
Sbjct: 113 IHALKEHP-QILVGTPGRLIDHL-NRHTIDFR--GVKTLVIDEADEMLNMGFLEDIETIV 168
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P RQ+LLFSATMP ++
Sbjct: 169 HYTPDDRQTLLFSATMPDDI 188
>gi|420241874|ref|ZP_14745969.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
gi|398069204|gb|EJL60573.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
Length = 579
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 114/200 (57%), Gaps = 8/200 (4%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F E G++ + L A GY T +Q + LEG+D + A+TGTGK+ AF LP IE
Sbjct: 4 FHELGLTKQLVATLFALGYETPTPIQAQAIPQLLEGRDMIGLAQTGTGKTAAFGLPLIEM 63
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+LK + LIL PTREL +QIAA ++N + + +VGG Q
Sbjct: 64 LLKEQKRPDNRTT---RTLILAPTRELVNQIAASLKGYVRNTP-LKINAVVGGASINKQQ 119
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
+LE ILVATPGRLLD I ++ + L ++ LVLDEAD +LDLGF D+ I
Sbjct: 120 MQLEKG-TDILVATPGRLLDLISRRA---IGLTTVRYLVLDEADQMLDLGFIHDLRKISK 175
Query: 561 CLPRRRQSLLFSATMPKELV 580
+P +RQ+LLFSATMPK +
Sbjct: 176 MVPAKRQTLLFSATMPKAIA 195
>gi|335049615|ref|ZP_08542602.1| putative DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp.
UPII 199-6]
gi|333762350|gb|EGL39848.1| putative DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp.
UPII 199-6]
Length = 420
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 20/211 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F G+SP+ + L G T+VQE L A +G+D + +A+TGTGK++AFLLPA++
Sbjct: 5 FQTLGVSPILCELLKKRGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAFLLPALQ- 63
Query: 441 VLKATSSSTTQLVPPIY---VLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
Q+ P + VLIL PTRELA QI A A L I VL ++GG +
Sbjct: 64 ----------QIHPDQHQEQVLILAPTRELAKQITAVATDLAAALH-IDVLNIIGGQTIE 112
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
++L+ P Q+++ TPGRLLDH S+ L G+ +++DEAD LL GF +DV+
Sbjct: 113 NQLQKLQRHP-QVIIGTPGRLLDHCRRH---SLNLTGVGRIIVDEADQLLQTGFLEDVDT 168
Query: 558 IVDCLPRRRQSLLFSATMPKEL-VLKREHTY 587
++D P+RRQ L FSAT+P ++ L ++H +
Sbjct: 169 LLDMTPKRRQLLFFSATVPDKIKSLAKKHMH 199
>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
DSM 2375]
gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
2374]
gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
gi|222434510|gb|EEE41675.1| DEAD/DEAH box helicase [Methanobrevibacter smithii DSM 2375]
gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
2374]
Length = 429
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 123/204 (60%), Gaps = 12/204 (5%)
Query: 376 LSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLL 435
+S FD+ I K++ G+ + + +QE T+ L+G D + +A+TGTGK++AF +
Sbjct: 1 MSDITFDDFEILAEIKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTV 60
Query: 436 PAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTR 495
P ++ + +S ++LCPTREL Q+A E + + + +L + GG
Sbjct: 61 PLLQKIFIPDNSPQA--------IVLCPTRELCIQVAGEIGKIGSHMKKLKILPVYGGQP 112
Query: 496 FKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDV 555
Q R+ + +++ TPGR+LDHIE K+ + L G+ +VLDEAD +LD+GFR+D+
Sbjct: 113 IG-RQIRVLNKGVHVVIGTPGRVLDHIERKT---LDLKGISTVVLDEADEMLDMGFREDI 168
Query: 556 ENIVDCLPRRRQSLLFSATMPKEL 579
E I+ P++RQ+LLFSATMPKE+
Sbjct: 169 EKILRHTPKQRQTLLFSATMPKEI 192
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,603,729,148
Number of Sequences: 23463169
Number of extensions: 415648104
Number of successful extensions: 1955302
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 21358
Number of HSP's successfully gapped in prelim test: 7288
Number of HSP's that attempted gapping in prelim test: 1847868
Number of HSP's gapped (non-prelim): 41568
length of query: 633
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 484
effective length of database: 8,863,183,186
effective search space: 4289780662024
effective search space used: 4289780662024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 80 (35.4 bits)