BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006737
(633 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
RF + +S T+K L A Y +T +Q+ T+ L+GKD + AKTG+GK++AFL+P +E
Sbjct: 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 85
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
A+ + +ST L VLI+ PTRELA Q + KNHD L ++GG K +
Sbjct: 86 ALYRLQWTSTDGL----GVLIISPTRELAYQTFEVLRKVGKNHDFSAGL-IIGGKDLKHE 140
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
R+ + ILV TPGRLL H++ +S L+MLVLDEAD +LD+GF + ++
Sbjct: 141 AERINN--INILVCTPGRLLQHMDET--VSFHATDLQMLVLDEADRILDMGFADTMNAVI 196
Query: 560 DCLPRRRQSLLFSATMPKEL 579
+ LP++RQ+LLFSAT K +
Sbjct: 197 ENLPKKRQTLLFSATQTKSV 216
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 390 TIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
T+KA+ G+ MT +Q ++ LEG+D + AKTG+GK++AFL+PA+E ++K
Sbjct: 65 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKL----- 119
Query: 450 TQLVP--PIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
+ +P VLIL PTRELA Q L+ +H L ++GG+ + ++L +
Sbjct: 120 -RFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGL-IMGGSNRSAEAQKL-GNG 176
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I+VATPGRLLDH++N G + L+ LV+DEAD +LD+GF ++++ I+ LP RRQ
Sbjct: 177 INIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 234
Query: 568 SLLFSATMPKE------LVLKREHTYI 588
++LFSAT ++ + LK+E Y+
Sbjct: 235 TMLFSATQTRKVEDLARISLKKEPLYV 261
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 122/209 (58%), Gaps = 15/209 (7%)
Query: 374 PILSQ---KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKS 430
PI+ + K F + G++ + +A G+ + T++Q + L+G+D + A+TG+GK+
Sbjct: 35 PIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKT 94
Query: 431 IAFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTL 490
AF LP + A+L+ ++ L+L PTRELA QI+ E L + G+ +
Sbjct: 95 GAFALPILNALLETPQR--------LFALVLTPTRELAFQIS-EQFEALGSSIGVQSAVI 145
Query: 491 VGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLG 550
VGG L P I++ATPGRL+DH+EN G ++R LK LV+DEAD +L++
Sbjct: 146 VGGIDSMSQSLALAKKP-HIIIATPGRLIDHLENTKGFNLR--ALKYLVMDEADRILNMD 202
Query: 551 FRKDVENIVDCLPRRRQSLLFSATMPKEL 579
F +V+ I+ +PR R++ LFSATM K++
Sbjct: 203 FETEVDKILKVIPRDRKTFLFSATMTKKV 231
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 32/254 (12%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 94 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 567 -------QSLLFSAT-------MPKELVLKREHTYIDTVGLGSVETPVKV-------SKY 605
++LLFSAT + ++ K+E ++DTV E ++ K+
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 606 NIYVFVLVLSIKIQ 619
+F V IK Q
Sbjct: 268 ANSIFAAVEHIKKQ 281
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 129/254 (50%), Gaps = 32/254 (12%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 85 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 144
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 145 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 200
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 201 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 258
Query: 567 -------QSLLFSAT-------MPKELVLKREHTYIDTVGLGSVETPVKV-------SKY 605
++LLFSAT + ++ K+E ++DTV E ++ K+
Sbjct: 259 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318
Query: 606 NIYVFVLVLSIKIQ 619
+F V IK Q
Sbjct: 319 ANSIFAAVEHIKKQ 332
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 18/203 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 101
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +A L ++ G +GGT +
Sbjct: 102 IELDLKATQA-----------LVLAPTRELAQQIQKVVMA-LGDYMGASCHACIGGTNVR 149
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 150 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 206
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 207 IFQKLNSNTQVVLLSATMPSDVL 229
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 111/180 (61%), Gaps = 14/180 (7%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAV-LKATSSSTTQLVPPI 456
G+ + + +QE ++ L G+D + +AK GTGKS A+L+P +E + LK + I
Sbjct: 22 GWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN---------I 72
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
+++ PTRELA Q++ I + K+ G V+ GGT + D RL+ D +++ATPG
Sbjct: 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPG 131
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD I K G++ ++ ++M+VLDEAD LL F + +E+I+ LP+ RQ LL+SAT P
Sbjct: 132 RILDLI--KKGVA-KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 114/203 (56%), Gaps = 18/203 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 16 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 75
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE LKAT + L+L PTRELA QI +A L ++ G +GGT +
Sbjct: 76 IELDLKATQA-----------LVLAPTRELAQQIQKVVMA-LGDYMGASCHACIGGTNVR 123
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+ + I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ + +
Sbjct: 124 AEVQKLQMEAPHIIVGTPGRVFDML-NRRYLSPKY--IKMFVLDEADEMLSRGFKDQIYD 180
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 181 IFQKLNSNTQVVLLSATMPSDVL 203
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 25/219 (11%)
Query: 392 KALTAAGYIQMTRVQEATLSACL--EGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSST 449
KA+T + +T VQ+ T+ L E D + +AKTGTGK+ AFL+P + ++ S
Sbjct: 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93
Query: 450 TQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGI---GVLTLVGGTRFKVDQRRLESD 506
+ +I+ PTR+LA QI AE + + G+ ++LVGGT F+ ++
Sbjct: 94 YM----VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 507 PCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRR 566
I++ATPGRL+D +E S R + K VLDEAD LL++GFR D+E I L +
Sbjct: 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYK--VLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 567 -------QSLLFSAT-------MPKELVLKREHTYIDTV 591
++LLFSAT + ++ K+E ++DTV
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTV 246
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 397 AGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
AG+ + + +QE + + G+D + +AK GTGK+ AF++P +E V + I
Sbjct: 39 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNK--------I 90
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
LI+ PTRELA Q ++ + L H GI + GGT + D RL ++ ILV TPG
Sbjct: 91 QALIMVPTRELALQ-TSQVVRTLGKHCGISCMVTTGGTNLRDDILRL-NETVHILVGTPG 148
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLFSATMP 576
R+LD K L + ++DEAD +L F+ +E I+ LP QSLLFSAT P
Sbjct: 149 RVLDLASRKVA---DLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFP 205
Query: 577 ---KELVLKREH 585
KE ++K H
Sbjct: 206 LTVKEFMVKHLH 217
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 12/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++AL G T +Q A L LEGKD + +A+TGTGK++AF LP E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + L+L PTRELA Q+A+E A+ + + V+ + GGT + +
Sbjct: 63 LAPSQERGRKP-----RALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQK 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +VATPGR LD++ + G+ + L +++ VLDEAD +L +GF ++VE ++
Sbjct: 115 EALLRG-ADAVVATPGRALDYL--RQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170
Query: 561 CLPRRRQSLLFSATMP 576
P RQ+LLFSAT+P
Sbjct: 171 ATPPSRQTLLFSATLP 186
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 110 bits (274), Expect = 3e-24, Method: Composition-based stats.
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 12/196 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++AL G T ++ A L LEGKD + +A+TGTGK++AF LP E
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ + L+L PTRELA Q+A+E A+ + + V+ + GGT + +
Sbjct: 63 LAPSQERGRKP-----RALVLTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQK 114
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
L +VATPGR LD++ + G+ + L +++ VLDEAD +L +GF ++VE ++
Sbjct: 115 EALLRG-ADAVVATPGRALDYL--RQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170
Query: 561 CLPRRRQSLLFSATMP 576
P RQ+LLFSAT+P
Sbjct: 171 ATPPSRQTLLFSATLP 186
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 16/201 (7%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGK-DAVVKAKTGTGKSIAFLLPAIE 439
F+E +S + A+ G+ + T +Q + L + + V +A+TG+GK+ +F +P IE
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
V + I +IL PTRELA Q+A E I LK + + + + GG
Sbjct: 68 LVNENNG---------IEAIILTPTRELAIQVADE-IESLKGNKNLKIAKIYGGKAIYPQ 117
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
+ L++ I+V TPGR+LDHI N+ L+ L +K +LDEAD L+ GF KDVE I+
Sbjct: 118 IKALKN--ANIVVGTPGRILDHI-NRGTLN--LKNVKYFILDEADEXLNXGFIKDVEKIL 172
Query: 560 DCLPRRRQSLLFSATMPKELV 580
+ + ++ LLFSAT P+E++
Sbjct: 173 NACNKDKRILLFSATXPREIL 193
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 111/207 (53%), Gaps = 12/207 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ FDE + P + A Y + T +Q+ + A LE +D + A+TG+GK+ AFL+P I
Sbjct: 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 82
Query: 439 EAVL--KATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
++ ++ P LIL PTRELA QI +E+ N + + GG
Sbjct: 83 NHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADT 140
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVE 556
R ++ C +LVATPGRL+D IE + L K +VLDEAD +LD+GF +
Sbjct: 141 HSQIREVQMG-CHLLVATPGRLVDFIEKN---KISLEFCKYIVLDEADRMLDMGFEPQIR 196
Query: 557 NIVD--CLPR--RRQSLLFSATMPKEL 579
I++ +P RQ+L+FSAT PKE+
Sbjct: 197 KIIEESNMPSGINRQTLMFSATFPKEI 223
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 12/204 (5%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
+ F + + I + +GY T +Q+ ++ G+D + A+TG+GK+ AFLLP +
Sbjct: 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPIL 115
Query: 439 EAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIAL-LKNHDGIGVLTLVGGTRFK 497
+L+ +L P V+I+ PTRELA QI EA +++ IG+ + GGT F+
Sbjct: 116 SKLLE--DPHELELGRP-QVVIVSPTRELAIQIFNEARKFAFESYLKIGI--VYGGTSFR 170
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
Q + C +++ATPGRLLD ++ + + +VLDEAD +LD+GF +D+
Sbjct: 171 -HQNECITRGCHVVIATPGRLLDFVDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRR 226
Query: 558 IVDCLPRR--RQSLLFSATMPKEL 579
I+ + R Q+L+FSAT P+E+
Sbjct: 227 IMTHVTMRPEHQTLMFSATFPEEI 250
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 9 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 64
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 65 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 120
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDEAD +L+ L R+DV+ I
Sbjct: 121 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDEADKMLEQLDMRRDVQEIF 177
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P +Q ++FSAT+ KE+
Sbjct: 178 RMTPHEKQVMMFSATLSKEI 197
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 22 KFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 82 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 132
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 133 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 187
Query: 560 DCLPRRRQSLLFSATMPKELV 580
LP Q +L SATMP +++
Sbjct: 188 TLLPPTTQVVLLSATMPNDVL 208
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 23 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 82
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 83 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 133
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 134 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 188
Query: 560 DCLPRRRQSLLFSATMPKELV 580
LP Q +L SATMP +++
Sbjct: 189 TLLPPTTQVVLLSATMPNDVL 209
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L+L PTRELA QI +AL + D I V +GGT F D
Sbjct: 75 RI--DTSVKAPQ------ALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVED 125
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +KM +LDEAD +L GF++ + I
Sbjct: 126 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF 180
Query: 560 DCLPRRRQSLLFSATMPKELV 580
LP Q +L SATMP +++
Sbjct: 181 TLLPPTTQVVLLSATMPNDVL 201
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 111/203 (54%), Gaps = 18/203 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ + ++ + A G+ + + +Q+ + C++G D + +A++GTGK+ F +L
Sbjct: 32 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 91
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
+E K T + L+L PTRELA QI + I L ++ G +GGT +
Sbjct: 92 LEIEFKETQA-----------LVLAPTRELAQQI-QKVILALGDYMGATCHACIGGTNVR 139
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ ++L+++ I+V TPGR+ D + N+ LS + +KM VLDEAD +L GF+ +
Sbjct: 140 NEMQKLQAEAPHIVVGTPGRVFDML-NRRYLSPKW--IKMFVLDEADEMLSRGFKDQIYE 196
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 197 IFQKLNTSIQVVLLSATMPTDVL 219
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 66 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P +Q ++FSAT+ KE+
Sbjct: 179 RMTPHEKQVMMFSATLSKEI 198
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 12/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----A 65
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
L+ T Q + VL++C TRELA QI+ E K + V GG K D+
Sbjct: 66 TLQQLEPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIV 559
L+ + I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178
Query: 560 DCLPRRRQSLLFSATMPKEL 579
P +Q ++FSAT+ KE+
Sbjct: 179 RMTPHEKQVMMFSATLSKEI 198
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 98
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 99 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 149
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 150 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 205
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q +L SAT+P E++
Sbjct: 206 YLPPATQVVLISATLPHEIL 225
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 100 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q +L SAT+P E++
Sbjct: 207 YLPPATQVVLISATLPHEIL 226
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 18 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 77
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 78 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 128
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 129 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 184
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q +L SAT+P E++
Sbjct: 185 YLPPATQVVLISATLPHEIL 204
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 110/200 (55%), Gaps = 13/200 (6%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F + ++
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
+ TQ LIL PTRELA QI +AL ++ + +GGT D
Sbjct: 100 L--DIQVRETQ------ALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDI 150
Query: 501 RRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVD 560
R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + ++
Sbjct: 151 RKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 206
Query: 561 CLPRRRQSLLFSATMPKELV 580
LP Q +L SAT+P E++
Sbjct: 207 YLPPATQVVLISATLPHEIL 226
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 12/195 (6%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
+ P ++A+ G+ + VQ + + G D + +AK+G GK+ F+L A L+
Sbjct: 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVL----ATLQQL 76
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
T Q + VL++C TRELA QI+ E K + V GG K D+ L+
Sbjct: 77 EPVTGQ----VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPR 564
+ I+V TPGR+L NK S+ L +K +LDE D +L+ L R+DV+ I P
Sbjct: 133 NCPHIVVGTPGRILALARNK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189
Query: 565 RRQSLLFSATMPKEL 579
+Q ++FSAT+ KE+
Sbjct: 190 EKQVMMFSATLSKEI 204
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 112/203 (55%), Gaps = 19/203 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F +L
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ ++ T + LIL PTRELA Q+ +AL ++ + +GGT
Sbjct: 63 LDIQVRETQA-----------LILAPTRELAVQVQKGLLAL-GDYMNVQCHACIGGTNVG 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
D R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + +
Sbjct: 111 EDIRKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYD 166
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
+ LP Q +L SAT+P E++
Sbjct: 167 VYRYLPPATQVVLISATLPHEIL 189
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 112/203 (55%), Gaps = 19/203 (9%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD G+ ++ + A G+ + + +Q+ + ++G+D + ++++GTGK+ F +L
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQC 62
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
++ ++ T + LIL PTRELA Q+ +AL ++ + +GGT
Sbjct: 63 LDIQVRETQA-----------LILAPTRELAVQVQKGLLAL-GDYMNVQSHACIGGTNVG 110
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
D R+L+ ++ TPGR+ D I +S +R +KMLVLDEAD +L+ GF++ + +
Sbjct: 111 EDIRKLDYGQ-HVVAGTPGRVFDMIRRRS---LRTRAIKMLVLDEADEMLNKGFKEQIYD 166
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
+ LP Q +L SAT+P E++
Sbjct: 167 VYRYLPPATQVVLISATLPHEVL 189
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 18/203 (8%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF---LLPA 437
FD+ +S ++ + A G+ + +Q+ + C+ G D + +A++GTG + F +L
Sbjct: 17 FDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQ 76
Query: 438 IEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFK 497
IE L AT + L+L PTRELA QI +AL ++ G +GGT +
Sbjct: 77 IELDLXATQA-----------LVLAPTRELAQQIQXVVMAL-GDYMGASCHACIGGTNVR 124
Query: 498 VDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
+ + L+ + I+V TPGR+ D + N+ LS + M VLDEAD +L GF + +
Sbjct: 125 AEVQXLQMEAPHIIVGTPGRVFDML-NRRYLSPXY--IXMFVLDEADEMLSRGFXDQIYD 181
Query: 558 IVDCLPRRRQSLLFSATMPKELV 580
I L Q +L SATMP +++
Sbjct: 182 IFQXLNSNTQVVLLSATMPSDVL 204
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 377 SQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLP 436
++ +F P I+A+ + + T +QE + L G+ V +++TGTGK+ A+LLP
Sbjct: 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP 61
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLK---NHDGIGVLTLVGG 493
E + + + +I PTRELA+QI E + + K I L+GG
Sbjct: 62 IXEKIKPERAE--------VQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGG 113
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
T + +L P I++ TPGR+ D I + ++ + +LV+DEAD LD GF
Sbjct: 114 TDKQKALEKLNVQP-HIVIGTPGRINDFIREQ---ALDVHTAHILVVDEADLXLDXGFIT 169
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
DV+ I P+ Q L+FSAT+P++L
Sbjct: 170 DVDQIAARXPKDLQXLVFSATIPEKL 195
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 105/188 (55%), Gaps = 20/188 (10%)
Query: 392 KALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQ 451
+A+ G+ T VQ T+ L+GK+ VV+AKTG+GK+ A+ +P +E +K+
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKS------- 59
Query: 452 LVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQIL 511
L++ PTREL Q+A+ + + D V + GG +K R+ + I+
Sbjct: 60 -------LVVTPTRELTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVRN--ADIV 109
Query: 512 VATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQSLLF 571
VATPGRLLD S + L +++++DEAD + ++GF D++ I+ R+ + LF
Sbjct: 110 VATPGRLLDLW---SKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLF 166
Query: 572 SATMPKEL 579
SAT+P+E+
Sbjct: 167 SATIPEEI 174
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 14/201 (6%)
Query: 380 RFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIE 439
+FD+ + ++ + G+ + + +Q+ + +EG D + +A++GTGK+ F + A++
Sbjct: 22 KFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 440 AVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVD 499
+ TS Q L L PTRELA QI + + L H I V +GGT F D
Sbjct: 82 RI--DTSVKAPQ------ALXLAPTRELALQIQ-KVVXALAFHXDIKVHACIGGTSFVED 132
Query: 500 QRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIV 559
L QI+V TPGR+ D+I+ + R +K +LDEAD L GF++ + I
Sbjct: 133 AEGLRD--AQIVVGTPGRVFDNIQRRR---FRTDKIKXFILDEADEXLSSGFKEQIYQIF 187
Query: 560 DCLPRRRQSLLFSATMPKELV 580
LP Q +L SAT P +++
Sbjct: 188 TLLPPTTQVVLLSATXPNDVL 208
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 107/215 (49%), Gaps = 23/215 (10%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F + + + + + Y + T VQ+ + E +D + A+TG+GK+ AFLLP +
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76
Query: 441 V-----------LKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLT 489
+ +K + PI L+L PTRELA QI EA +
Sbjct: 77 IYSDGPGEALRAMKENGRYGRRKQYPI-SLVLAPTRELAVQIYEEARK-FSYRSRVRPCV 134
Query: 490 LVGGTRFKVDQRRLESDPCQILVATPGRLLDHIE-NKSGLSVRLMGLKMLVLDEADHLLD 548
+ GG R LE C +LVATPGRL+D +E K GL K LVLDEAD +LD
Sbjct: 135 VYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLDF----CKYLVLDEADRMLD 189
Query: 549 LGFRKDVENIV--DCLPRR--RQSLLFSATMPKEL 579
+GF + IV D +P + R +++FSAT PKE+
Sbjct: 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI 224
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 11/206 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F E + + + + T +Q L G D V A+TG+GK++++
Sbjct: 41 PVLN---FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 97
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LLPAI + PI L+L PTRELA Q+ A + + + GG
Sbjct: 98 LLPAIVHINHQPFLERGD--GPI-CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGG 153
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
R LE +I +ATPGRL+D +E L LVLDEAD +LD+GF
Sbjct: 154 APKGPQIRDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEP 209
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
+ IVD + RQ+L++SAT PKE+
Sbjct: 210 QIRKIVDQIRPDRQTLMWSATWPKEV 235
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 11/206 (5%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAF 433
P+L+ F E + + + + T +Q L G D V A+TG+GK++++
Sbjct: 27 PVLN---FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83
Query: 434 LLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGG 493
LLPAI + PI L+L PTRELA Q+ A + + + GG
Sbjct: 84 LLPAIVHINHQPFLERGD--GPI-CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGG 139
Query: 494 TRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRK 553
R LE +I +ATPGRL+D +E L LVLDEAD +LD+GF
Sbjct: 140 APKGPQIRDLERG-VEICIATPGRLIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEP 195
Query: 554 DVENIVDCLPRRRQSLLFSATMPKEL 579
+ IVD + RQ+L++SAT PKE+
Sbjct: 196 QIRKIVDQIRPDRQTLMWSATWPKEV 221
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 24/205 (11%)
Query: 381 FDECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEA 440
F+ +S ++ L AAG+ + + VQ + G D +V+AK+GTGK+ F A+++
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 441 VLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQ 500
++ S+ +LIL PTRE+A QI + A+ +G+ +GGT D+
Sbjct: 86 LVLENLSTQ--------ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDK 137
Query: 501 RRLESDPCQILVATPGRL-----LDHIENKSGLSVRLMGLKMLVLDEADHLLDLG-FRKD 554
RL+ C I V +PGR+ LD++ S +++ +LDEAD LL+ G F++
Sbjct: 138 TRLKK--CHIAVGSPGRIKQLIELDYLNPGS--------IRLFILDEADKLLEEGSFQEQ 187
Query: 555 VENIVDCLPRRRQSLLFSATMPKEL 579
+ I LP +Q L SAT P+ L
Sbjct: 188 INWIYSSLPASKQMLAVSATYPEFL 212
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 388 PLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSS 447
P +K++ G ++ T +Q L+G D +V A+TGTGK++++L+P L +
Sbjct: 29 PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGF-IHLDSQPI 87
Query: 448 STTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDP 507
S Q P +L+L PTRELA + AE ++ G+ + + GG R + Q S
Sbjct: 88 SREQRNGP-GMLVLTPTRELALHVEAECSKY--SYKGLKSICIYGG-RNRNGQIEDISKG 143
Query: 508 CQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRRRQ 567
I++ATPGRL D N SV L + LV+DEAD +LD+ F + I+ + RQ
Sbjct: 144 VDIIIATPGRLNDLQMNN---SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQ 200
Query: 568 SLLFSATMP 576
+++ SAT P
Sbjct: 201 TVMTSATWP 209
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+
Sbjct: 17 PLYSAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTA 76
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF L + V +S + L P+RELA Q E + + I +V
Sbjct: 77 AFSLTMLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIV 127
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LG 550
+ K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 128 PDSFEKNKQIN-----AQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLDEADNMLDQQG 179
Query: 551 FRKDVENIVDCLPRRRQSLLFSAT 574
+ LP+ Q +LFSAT
Sbjct: 180 LGDQCIRVKRFLPKDTQLVLFSAT 203
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 31/235 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 80 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 132 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 185
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ I LPR Q LLFSAT P + LKRE +DT+
Sbjct: 186 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 240
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 31/235 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 57 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 116
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 117 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 168
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 169 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 222
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ I LPR Q LLFSAT P + LKRE +DT+
Sbjct: 223 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 277
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 31/235 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 36 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 95
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 96 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 147
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 148 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 201
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ I LPR Q LLFSAT P + LKRE +DT+
Sbjct: 202 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 256
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 31/235 (13%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 147 AFVLAMLSQVEPANKYPQ--------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 198
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 199 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 252
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM--------------PKELVLKREHTYIDTV 591
+ I LPR Q LLFSAT P + LKRE +DT+
Sbjct: 253 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 307
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 80 AFVLAMLSQVEPANKYPQC--------LCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 131
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 132 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 185
Query: 551 FRKDVENIVDCLPRRRQSLLFSATM 575
+ I LPR Q LLFSAT
Sbjct: 186 HQDQSIRIQRMLPRNCQMLLFSATF 210
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 20/199 (10%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLP 436
K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+ AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ V +S + L P+RELA Q E + + I +V +
Sbjct: 65 MLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDV 555
K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 116 KNKQIN-----AQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLDEADNMLDQQGLGDQC 167
Query: 556 ENIVDCLPRRRQSLLFSAT 574
+ LP+ Q +LFSAT
Sbjct: 168 IRVKRFLPKDTQLVLFSAT 186
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 20/199 (10%)
Query: 379 KRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLP 436
K FDE G++P +K + A + + +++QE L L ++ + ++++GTGK+ AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 437 AIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRF 496
+ V +S + L P+RELA Q E + + I +V +
Sbjct: 65 MLTRVNPEDASPQA--------ICLAPSRELARQ-TLEVVQEMGKFTKITSQLIVPDSFE 115
Query: 497 KVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDV 555
K Q Q++V TPG +LD + K ++L +K+ VLDEAD++LD G
Sbjct: 116 KNKQIN-----AQVIVGTPGTVLDLMRRK---LMQLQKIKIFVLDEADNMLDQQGLGDQC 167
Query: 556 ENIVDCLPRRRQSLLFSAT 574
+ LP+ Q +LFSAT
Sbjct: 168 IRVKRFLPKDTQLVLFSAT 186
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 374 PILSQKRFDECGISPLTIKALTAAGYIQMTRVQEATLSACLE--GKDAVVKAKTGTGKSI 431
P+ S K F+E + P ++ + A G+ + +++QE L L ++ + ++++GTGK+
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 432 AFLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLV 491
AF+L + V A L L PT ELA Q + K + + + V
Sbjct: 147 AFVLAMLSQVEPANKYPQ--------CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 198
Query: 492 GGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDL-G 550
G + + Q+ E QI++ TPG +LD + + +K+ VLDEAD ++ G
Sbjct: 199 RGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPK--KIKVFVLDEADVMIATQG 252
Query: 551 FRKDVENIVDCLPRRRQSLLFSAT 574
+ I LPR Q LLFSAT
Sbjct: 253 HQDQSIRIQRMLPRNCQMLLFSAT 276
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 26/213 (12%)
Query: 374 PILSQKRFD-ECGISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIA 432
PI + ++ D E I+ ++ + AG+ T +Q + L G++ + A TG+GK++A
Sbjct: 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82
Query: 433 FLLPAIEAVLKATSSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVL---- 488
F +P + + + + LI+ PTRELASQI E L+K +G G
Sbjct: 83 FSIPILMQLKQPANKG-------FRALIISPTRELASQIHRE---LIKISEGTGFRIHMI 132
Query: 489 --TLVGGTRFKVDQRRLESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHL 546
V +F S ILV TP RL+ ++ + + L ++ LV+DE+D L
Sbjct: 133 HKAAVAAKKFGPK----SSKKFDILVTTPNRLI-YLLKQDPPGIDLASVEWLVVDESDKL 187
Query: 547 LD---LGFRKDVENI-VDCLPRRRQSLLFSATM 575
+ GFR + +I + C + + +FSAT
Sbjct: 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 48/230 (20%)
Query: 404 RVQEATLSACLEG--KDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLIL 461
++QE L L ++ + ++++GTGK+ AF L + V + VP + L
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--------VPKPQAICL 195
Query: 462 CPTRELASQIAAEAIALLKNHDGIGVLTLVGG-TRFKVDQRRLESDP------CQILVAT 514
P+RELA QI + V+T +G T K +S P QI++ T
Sbjct: 196 APSRELARQI-------------MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGT 242
Query: 515 PGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLD-LGFRKDVENIVDCLPRRRQSLLFSA 573
PG ++D ++ + L R +K+ VLDEAD++LD G I LPR Q +LFSA
Sbjct: 243 PGTVMDLMKRRQ-LDAR--DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 299
Query: 574 TMPK--------------ELVLKREHTYIDTVGLGSVETPVKVSKYNIYV 609
T + E+ LK E ++ + ++ + KYN+ V
Sbjct: 300 TFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLV 349
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
G+ + R+Q A LE ++ ++ A TG GK+ L+ + + K + T V
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
++ + P R L ++ L + GI V L G + + E QI+V TP
Sbjct: 136 KIIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPE 190
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ D I K G +++++LDE HLL
Sbjct: 191 K-WDIITRKGGERTYTQLVRLIILDEI-HLL 219
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 8/151 (5%)
Query: 398 GYIQMTRVQEATLSACLE-GKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPI 456
G+ + R+Q A LE ++ ++ A TG GK+ L+ + + K + T V
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 457 YVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPG 516
++ + P R L ++ L + GI V L G + + E QI+V TP
Sbjct: 136 KIIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKE----EISATQIIVCTPE 190
Query: 517 RLLDHIENKSGLSVRLMGLKMLVLDEADHLL 547
+ D I K G +++++LDE HLL
Sbjct: 191 K-WDIITRKGGERTYTQLVRLIILDEI-HLL 219
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
GY Q QE + L G+D +V TG GKS+ + +PA+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 398 GYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAI 438
GY Q QE + L G+D +V TG GKS+ + +PA+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459
+Q+ Q LEGK+ ++ TG GK+ + A + + K +S P V+
Sbjct: 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKAS-----EPGKVI 60
Query: 460 ILCPTRELASQI-AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL 518
+L L Q+ E LK V+ L G T+ K+ + C I+++T L
Sbjct: 61 VLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQIL 117
Query: 519 ---LDHIENKSGLSVRLMGLKMLVLDEADH 545
L ++EN V+L ++++DE H
Sbjct: 118 ENSLLNLENGEDAGVQLSDFSLIIIDECHH 147
>pdb|3B6E|A Chain A, Crystal Structure Of Human Dech-Box Rna Helicase Mda5
(Melanoma Differentiation-Associated Protein 5),
Dech-Domain
Length = 216
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 400 IQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVL 459
+Q+ Q LEGK+ ++ TG+GK+ + A + + K +S P V+
Sbjct: 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASE-----PGKVI 86
Query: 460 ILCPTRELASQI-AAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLESDPCQILVATPGRL 518
+L L Q+ E LK V+ L G T+ K+ + C I+++T L
Sbjct: 87 VLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVVKS-CDIIISTAQIL 143
Query: 519 ---LDHIENKSGLSVRLMGLKMLVLDEADH 545
L ++EN V+L ++++DE H
Sbjct: 144 ENSLLNLENGEDAGVQLSDFSLIIIDECHH 173
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Query: 405 VQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKATSSSTTQLVPPIYVLILCP 463
+Q T++ + GK+ + TG GKS+ + LPA L + L++CP
Sbjct: 48 LQLETINVTMAGKEVFLVMPTGGGKSLCYQLPA--------------LCSDGFTLVICP 92
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 126 EQRPRSGAEANQRPRLAGAPIDLRGLISDKR 156
E RP G P L GAP+ +RG++ D++
Sbjct: 214 EVRPSDGDFGETLPELLGAPVPIRGVLGDQQ 244
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
L SD C L+A G LDH + + GL+ M + + + L++LG +VE+
Sbjct: 87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 141
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 25/195 (12%)
Query: 386 ISPLTIKALTAAGYIQMTRVQEATLSACLEGKDAVVKAKTGTGKSIAFLLPAIEAVLKAT 445
IS + L G ++ Q + GK+ ++ T GK++ + + +K
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG 69
Query: 446 SSSTTQLVPPIYVLILCPTRELASQIAAEAIALLKNHDGIGVLTLVGGTRFKVDQRRLES 505
S L + P R L A E K + IG+ +G + + R
Sbjct: 70 KS-----------LYVVPLRAL----AGEKYESFKKWEKIGL--RIGISTGDYESRDEHL 112
Query: 506 DPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVENIVDCLPRR 565
C I+V T + I N++ + + LV+DE HLLD R I+ RR
Sbjct: 113 GDCDIIVTTSEKADSLIRNRASW---IKAVSCLVVDEI-HLLDSEKRGATLEILVTKMRR 168
Query: 566 RQSLL----FSATMP 576
L SAT P
Sbjct: 169 MNKALRVIGLSATAP 183
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 28.9 bits (63), Expect = 10.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 503 LESDPCQILVATPGRLLDHIENKSGLSVRLMGLKMLVLDEADHLLDLGFRKDVEN 557
L SD C L+A G LDH + + GL+ M + + + L++LG +VE+
Sbjct: 86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,561,689
Number of Sequences: 62578
Number of extensions: 567312
Number of successful extensions: 1563
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 68
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)